Query 000833
Match_columns 1263
No_of_seqs 359 out of 2838
Neff 10.0
Searched_HMMs 46136
Date Tue Apr 2 00:15:23 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0996 Structural maintenance 100.0 6E-139 1E-143 1199.8 130.0 1207 14-1259 78-1290(1293)
2 COG1196 Smc Chromosome segrega 100.0 1E-119 3E-124 1168.1 142.5 1152 20-1257 1-1160(1163)
3 KOG0018 Structural maintenance 100.0 2E-106 4E-111 925.8 112.8 1116 19-1254 1-1140(1141)
4 KOG0964 Structural maintenance 100.0 4E-102 8E-107 874.1 119.2 1149 20-1254 1-1187(1200)
5 KOG0933 Structural maintenance 100.0 4E-100 9E-105 862.9 109.2 1136 20-1248 1-1166(1174)
6 TIGR02169 SMC_prok_A chromosom 100.0 8.2E-98 2E-102 1004.0 147.0 1150 21-1253 1-1164(1164)
7 TIGR02168 SMC_prok_B chromosom 100.0 2.9E-83 6.4E-88 867.0 138.5 1150 21-1253 1-1179(1179)
8 KOG0250 DNA repair protein RAD 100.0 1.6E-69 3.4E-74 629.9 100.8 662 16-801 36-723 (1074)
9 KOG0979 Structural maintenance 100.0 5.9E-55 1.3E-59 499.6 94.9 1001 10-1243 10-1046(1072)
10 PRK02224 chromosome segregatio 100.0 1.4E-44 3.1E-49 466.0 108.7 153 20-203 1-166 (880)
11 PRK03918 chromosome segregatio 100.0 3.3E-43 7.1E-48 455.3 113.3 169 20-216 1-175 (880)
12 TIGR00606 rad50 rad50. This fa 100.0 4.9E-41 1.1E-45 441.8 118.7 183 1068-1255 1094-1305(1311)
13 PRK01156 chromosome segregatio 100.0 6.1E-41 1.3E-45 431.2 107.2 168 20-216 1-179 (895)
14 COG0419 SbcC ATPase involved i 100.0 2.2E-36 4.7E-41 385.1 109.6 173 20-216 1-184 (908)
15 PRK04863 mukB cell division pr 100.0 1.4E-32 3.1E-37 350.6 113.9 211 1042-1257 1212-1469(1486)
16 TIGR00618 sbcc exonuclease Sbc 100.0 3.2E-31 6.9E-36 343.2 115.3 184 20-226 1-204 (1042)
17 PRK10246 exonuclease subunit S 100.0 1.5E-30 3.2E-35 333.2 117.1 182 20-226 1-208 (1047)
18 TIGR02680 conserved hypothetic 100.0 3E-31 6.5E-36 345.3 108.1 89 1160-1251 1243-1342(1353)
19 PRK10869 recombination and rep 100.0 4.4E-34 9.4E-39 338.3 53.1 205 1039-1243 294-509 (553)
20 TIGR00634 recN DNA repair prot 100.0 5.9E-31 1.3E-35 316.5 55.0 205 1039-1243 299-519 (563)
21 KOG0962 DNA repair protein RAD 100.0 2.4E-21 5.2E-26 233.9 108.3 144 1106-1253 1122-1287(1294)
22 TIGR02168 SMC_prok_B chromosom 100.0 6.2E-21 1.4E-25 259.0 94.6 629 448-1127 375-1041(1179)
23 PF02463 SMC_N: RecF/RecN/SMC 100.0 6.4E-27 1.4E-31 249.8 25.3 127 21-152 1-128 (220)
24 COG0497 RecN ATPase involved i 99.9 3.5E-24 7.7E-29 241.4 41.6 339 893-1244 160-511 (557)
25 TIGR02169 SMC_prok_A chromosom 99.9 2.1E-18 4.6E-23 233.3 100.5 816 249-1128 193-1035(1164)
26 COG1196 Smc Chromosome segrega 99.9 2.5E-17 5.3E-22 215.4 97.8 350 747-1128 668-1026(1163)
27 PHA02562 46 endonuclease subun 99.9 6.8E-23 1.5E-27 252.1 39.3 170 19-216 1-180 (562)
28 PF13514 AAA_27: AAA domain 99.9 2.2E-16 4.7E-21 206.4 96.3 119 1113-1236 978-1101(1111)
29 COG0497 RecN ATPase involved i 99.9 1.4E-22 3.1E-27 228.5 32.3 317 21-389 1-337 (557)
30 PF12128 DUF3584: Protein of u 99.9 1E-13 2.2E-18 181.6 111.6 72 1166-1240 1122-1200(1201)
31 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.5E-22 1.6E-26 214.2 15.3 154 20-178 1-158 (251)
32 COG4913 Uncharacterized protei 99.9 1.8E-12 3.8E-17 144.9 87.4 93 1163-1257 989-1094(1104)
33 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5E-21 1.1E-25 206.7 14.4 146 22-180 1-147 (247)
34 COG4717 Uncharacterized conser 99.8 7.1E-11 1.5E-15 136.2 91.4 108 1116-1230 859-970 (984)
35 KOG0996 Structural maintenance 99.8 9.5E-11 2.1E-15 139.3 93.1 63 746-808 778-840 (1293)
36 PHA02562 46 endonuclease subun 99.8 1.4E-16 2.9E-21 196.3 42.3 100 1149-1249 453-559 (562)
37 cd03241 ABC_RecN RecN ATPase i 99.8 2E-19 4.2E-24 197.4 11.5 139 22-194 1-147 (276)
38 KOG0964 Structural maintenance 99.8 5.6E-10 1.2E-14 129.7 81.6 251 291-554 228-492 (1200)
39 cd03272 ABC_SMC3_euk Eukaryoti 99.8 4.6E-18 1E-22 184.7 14.8 150 22-178 1-150 (243)
40 cd03242 ABC_RecF RecF is a rec 99.8 3.7E-18 8E-23 186.6 13.3 152 22-211 1-155 (270)
41 PRK00064 recF recombination pr 99.7 1.9E-17 4E-22 187.9 15.6 140 20-197 1-141 (361)
42 PRK14079 recF recombination pr 99.7 6.9E-17 1.5E-21 182.0 16.3 155 20-216 1-155 (349)
43 TIGR03185 DNA_S_dndD DNA sulfu 99.7 5.1E-13 1.1E-17 164.8 51.8 166 20-203 1-186 (650)
44 COG1126 GlnQ ABC-type polar am 99.7 1.1E-16 2.3E-21 156.2 8.4 88 1152-1243 124-213 (240)
45 TIGR03185 DNA_S_dndD DNA sulfu 99.6 1.7E-11 3.7E-16 151.3 52.9 108 1113-1229 504-616 (650)
46 KOG0933 Structural maintenance 99.6 4.5E-08 9.7E-13 115.0 84.9 14 681-694 611-624 (1174)
47 KOG0018 Structural maintenance 99.6 4.3E-08 9.2E-13 116.5 75.9 51 1041-1094 923-973 (1141)
48 KOG0161 Myosin class II heavy 99.6 3.9E-07 8.3E-12 118.8 89.8 19 201-219 955-973 (1930)
49 COG1136 SalX ABC-type antimicr 99.6 2.7E-15 5.7E-20 152.6 9.7 80 1160-1243 138-219 (226)
50 cd03277 ABC_SMC5_euk Eukaryoti 99.6 3.4E-15 7.3E-20 156.0 8.3 107 20-180 1-108 (213)
51 PF06470 SMC_hinge: SMC protei 99.6 1.8E-14 3.9E-19 137.2 11.4 117 575-691 2-120 (120)
52 KOG0250 DNA repair protein RAD 99.5 2.9E-08 6.4E-13 119.1 63.5 96 1148-1243 969-1070(1074)
53 KOG0161 Myosin class II heavy 99.5 1.2E-06 2.7E-11 114.3 97.5 11 43-53 658-668 (1930)
54 cd03274 ABC_SMC4_euk Eukaryoti 99.5 4.5E-14 9.7E-19 147.6 11.9 102 1148-1249 111-212 (212)
55 COG1122 CbiO ABC-type cobalt t 99.5 5.5E-15 1.2E-19 154.2 4.9 87 1153-1243 127-216 (235)
56 COG1124 DppF ABC-type dipeptid 99.5 1.3E-14 2.8E-19 145.2 6.8 83 1157-1243 134-219 (252)
57 COG1135 AbcC ABC-type metal io 99.5 1.8E-14 3.9E-19 148.6 7.8 92 1148-1243 125-219 (339)
58 COG3840 ThiQ ABC-type thiamine 99.5 1.1E-14 2.5E-19 136.9 5.7 117 1123-1243 88-207 (231)
59 cd03239 ABC_SMC_head The struc 99.5 1.9E-14 4.1E-19 145.6 7.3 80 22-104 1-81 (178)
60 TIGR00611 recf recF protein. A 99.5 1.6E-13 3.4E-18 155.2 15.4 154 20-210 1-157 (365)
61 COG1127 Ttg2A ABC-type transpo 99.5 3.1E-14 6.7E-19 141.5 8.4 82 1158-1243 139-223 (263)
62 cd03278 ABC_SMC_barmotin Barmo 99.5 7.8E-14 1.7E-18 144.1 11.4 91 1156-1246 105-196 (197)
63 COG1116 TauB ABC-type nitrate/ 99.5 6.2E-14 1.3E-18 142.2 10.0 95 1156-1254 122-220 (248)
64 cd03275 ABC_SMC1_euk Eukaryoti 99.5 8.2E-14 1.8E-18 150.6 11.4 100 1152-1251 143-245 (247)
65 COG1117 PstB ABC-type phosphat 99.5 2E-14 4.2E-19 139.6 5.5 92 1161-1256 146-242 (253)
66 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 5.2E-14 1.1E-18 145.3 7.9 84 1155-1242 130-215 (254)
67 cd03274 ABC_SMC4_euk Eukaryoti 99.5 9.6E-14 2.1E-18 145.1 8.1 85 20-104 1-85 (212)
68 COG1125 OpuBA ABC-type proline 99.5 9.1E-14 2E-18 138.6 7.2 82 1158-1243 129-213 (309)
69 cd03273 ABC_SMC2_euk Eukaryoti 99.5 2.4E-13 5.2E-18 147.7 10.8 88 1159-1246 161-248 (251)
70 COG1120 FepC ABC-type cobalami 99.4 2.1E-13 4.5E-18 141.8 9.0 83 1157-1243 131-216 (258)
71 COG0444 DppD ABC-type dipeptid 99.4 1.7E-13 3.7E-18 144.3 8.3 80 1160-1243 149-231 (316)
72 PRK04863 mukB cell division pr 99.4 7E-06 1.5E-10 107.6 90.1 50 19-70 4-53 (1486)
73 COG1118 CysA ABC-type sulfate/ 99.4 2.8E-13 6.1E-18 139.5 8.3 92 1148-1243 121-215 (345)
74 COG4181 Predicted ABC-type tra 99.4 4.5E-13 9.8E-18 124.7 8.3 83 1158-1244 140-224 (228)
75 cd03239 ABC_SMC_head The struc 99.4 1.8E-12 3.9E-17 131.2 11.6 82 1165-1246 95-177 (178)
76 COG4598 HisP ABC-type histidin 99.4 9.2E-13 2E-17 123.5 8.4 88 1152-1243 140-229 (256)
77 TIGR00606 rad50 rad50. This fa 99.4 1.8E-05 3.8E-10 106.3 100.3 174 21-217 2-200 (1311)
78 COG1195 RecF Recombinational D 99.4 2.2E-12 4.7E-17 140.1 12.2 149 20-207 1-153 (363)
79 COG1123 ATPase components of v 99.4 9E-13 2E-17 150.0 9.2 80 1160-1243 150-232 (539)
80 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 1.2E-12 2.7E-17 139.5 9.1 79 1160-1242 136-216 (218)
81 TIGR00960 3a0501s02 Type II (G 99.4 1.7E-12 3.6E-17 138.1 9.9 79 1160-1242 134-214 (216)
82 COG1137 YhbG ABC-type (unclass 99.4 1.2E-12 2.6E-17 125.7 7.3 95 1161-1259 136-236 (243)
83 cd03259 ABC_Carb_Solutes_like 99.4 1.7E-12 3.6E-17 137.8 9.3 79 1160-1242 126-207 (213)
84 TIGR02314 ABC_MetN D-methionin 99.4 1.9E-12 4.2E-17 144.8 10.1 80 1160-1243 136-218 (343)
85 cd03293 ABC_NrtD_SsuB_transpor 99.4 2.4E-12 5.3E-17 137.2 10.4 77 1161-1241 128-207 (220)
86 PRK02224 chromosome segregatio 99.3 2E-05 4.3E-10 102.9 82.3 187 1047-1243 673-870 (880)
87 cd03226 ABC_cobalt_CbiO_domain 99.3 3.2E-12 7E-17 134.6 10.9 79 1160-1242 122-202 (205)
88 PF13555 AAA_29: P-loop contai 99.3 7E-13 1.5E-17 104.1 4.2 47 22-70 1-49 (62)
89 cd03225 ABC_cobalt_CbiO_domain 99.3 2.5E-12 5.4E-17 136.4 9.8 79 1160-1242 130-210 (211)
90 cd03261 ABC_Org_Solvent_Resist 99.3 2.4E-12 5.2E-17 138.8 9.7 80 1160-1243 132-214 (235)
91 TIGR02211 LolD_lipo_ex lipopro 99.3 2.6E-12 5.6E-17 137.4 9.7 79 1160-1242 137-217 (221)
92 cd03276 ABC_SMC6_euk Eukaryoti 99.3 9.6E-13 2.1E-17 136.2 6.1 75 22-103 1-76 (198)
93 cd03235 ABC_Metallic_Cations A 99.3 2.6E-12 5.6E-17 136.4 9.4 78 1160-1241 128-207 (213)
94 TIGR02673 FtsE cell division A 99.3 2.7E-12 5.8E-17 136.5 9.5 78 1161-1242 134-213 (214)
95 cd03214 ABC_Iron-Siderophores_ 99.3 3.3E-12 7.1E-17 131.1 9.7 79 1160-1242 93-174 (180)
96 COG4175 ProV ABC-type proline/ 99.3 1.7E-12 3.6E-17 133.8 7.1 92 1148-1243 148-242 (386)
97 cd03245 ABCC_bacteriocin_expor 99.3 4E-12 8.6E-17 135.8 10.2 78 1161-1242 137-214 (220)
98 cd03272 ABC_SMC3_euk Eukaryoti 99.3 6.1E-12 1.3E-16 136.7 11.6 89 1159-1247 153-241 (243)
99 TIGR01184 ntrCD nitrate transp 99.3 3.5E-12 7.5E-17 136.6 9.4 79 1161-1243 111-192 (230)
100 COG2884 FtsE Predicted ATPase 99.3 4.7E-12 1E-16 120.8 9.0 88 1152-1243 125-214 (223)
101 cd03264 ABC_drug_resistance_li 99.3 3.6E-12 7.7E-17 135.1 9.3 78 1161-1242 127-205 (211)
102 KOG4674 Uncharacterized conser 99.3 2.4E-05 5.2E-10 100.5 83.3 108 744-853 1234-1341(1822)
103 PRK13651 cobalt transporter AT 99.3 4.6E-12 9.9E-17 140.6 10.4 80 1160-1243 161-242 (305)
104 cd03260 ABC_PstB_phosphate_tra 99.3 4.4E-12 9.6E-17 136.1 10.0 78 1162-1243 139-217 (227)
105 cd03238 ABC_UvrA The excision 99.3 9.2E-12 2E-16 125.0 11.5 86 1159-1246 82-168 (176)
106 cd03223 ABCD_peroxisomal_ALDP 99.3 6.6E-12 1.4E-16 126.5 10.3 76 1161-1242 88-163 (166)
107 cd03246 ABCC_Protease_Secretio 99.3 6E-12 1.3E-16 128.2 10.1 74 1165-1242 97-171 (173)
108 TIGR01188 drrA daunorubicin re 99.3 4.9E-12 1.1E-16 141.2 9.8 80 1160-1243 120-201 (302)
109 PRK13536 nodulation factor exp 99.3 5.4E-12 1.2E-16 141.7 10.0 81 1159-1243 167-249 (340)
110 PRK13537 nodulation ABC transp 99.3 5.3E-12 1.1E-16 140.5 9.8 80 1160-1243 134-215 (306)
111 cd03256 ABC_PhnC_transporter A 99.3 5.5E-12 1.2E-16 137.0 9.7 80 1160-1243 140-222 (241)
112 cd03241 ABC_RecN RecN ATPase i 99.3 1.1E-11 2.4E-16 136.2 12.1 95 1161-1255 167-262 (276)
113 cd03296 ABC_CysA_sulfate_impor 99.3 5E-12 1.1E-16 136.7 9.2 80 1160-1243 132-214 (239)
114 cd03219 ABC_Mj1267_LivG_branch 99.3 6.9E-12 1.5E-16 135.6 10.2 80 1160-1243 139-220 (236)
115 PRK11022 dppD dipeptide transp 99.3 6.2E-12 1.3E-16 141.0 10.2 80 1160-1243 149-231 (326)
116 PRK13637 cbiO cobalt transport 99.3 6.7E-12 1.5E-16 138.8 10.2 80 1160-1243 140-222 (287)
117 PRK11153 metN DL-methionine tr 99.3 6E-12 1.3E-16 142.4 10.0 80 1160-1243 136-218 (343)
118 cd03237 ABC_RNaseL_inhibitor_d 99.3 6.1E-12 1.3E-16 135.1 9.6 80 1160-1243 111-193 (246)
119 COG1123 ATPase components of v 99.3 4.4E-12 9.6E-17 144.4 8.8 81 1159-1243 424-507 (539)
120 PRK15079 oligopeptide ABC tran 99.3 6.4E-12 1.4E-16 140.8 10.0 80 1160-1243 157-239 (331)
121 PRK11650 ugpC glycerol-3-phosp 99.3 5.4E-12 1.2E-16 142.7 9.4 80 1160-1243 130-212 (356)
122 cd03248 ABCC_TAP TAP, the Tran 99.3 8.4E-12 1.8E-16 133.8 10.5 78 1161-1242 147-224 (226)
123 PRK11247 ssuB aliphatic sulfon 99.3 7E-12 1.5E-16 135.7 9.7 80 1160-1243 129-211 (257)
124 cd03252 ABCC_Hemolysin The ABC 99.3 9.3E-12 2E-16 134.6 10.7 80 1160-1243 134-213 (237)
125 cd03268 ABC_BcrA_bacitracin_re 99.3 6.2E-12 1.3E-16 132.9 9.1 79 1160-1242 122-202 (208)
126 COG4172 ABC-type uncharacteriz 99.3 3.7E-12 8E-17 135.3 7.2 81 1159-1243 152-235 (534)
127 cd03247 ABCC_cytochrome_bd The 99.3 1E-11 2.3E-16 127.2 10.5 78 1162-1243 96-173 (178)
128 cd03257 ABC_NikE_OppD_transpor 99.3 6.6E-12 1.4E-16 135.1 9.4 80 1160-1243 141-223 (228)
129 PRK09473 oppD oligopeptide tra 99.3 6.9E-12 1.5E-16 140.6 9.8 80 1160-1243 157-239 (330)
130 cd03228 ABCC_MRP_Like The MRP 99.3 1E-11 2.2E-16 126.2 10.2 74 1165-1242 97-170 (171)
131 cd03292 ABC_FtsE_transporter F 99.3 7.9E-12 1.7E-16 133.0 9.8 78 1161-1242 133-212 (214)
132 cd03262 ABC_HisP_GlnQ_permease 99.3 7.7E-12 1.7E-16 132.9 9.7 79 1160-1242 131-211 (213)
133 TIGR01288 nodI ATP-binding ABC 99.3 6.6E-12 1.4E-16 140.2 9.6 80 1160-1243 131-212 (303)
134 TIGR01186 proV glycine betaine 99.3 7.3E-12 1.6E-16 140.9 9.9 80 1160-1243 125-207 (363)
135 PRK14245 phosphate ABC transpo 99.3 8.9E-12 1.9E-16 135.7 10.3 80 1160-1243 142-222 (250)
136 TIGR03258 PhnT 2-aminoethylpho 99.3 7.4E-12 1.6E-16 141.5 10.0 80 1160-1243 133-216 (362)
137 cd03240 ABC_Rad50 The catalyti 99.3 9.1E-12 2E-16 129.8 9.9 88 1159-1246 110-203 (204)
138 PRK14268 phosphate ABC transpo 99.3 8.9E-12 1.9E-16 136.2 10.3 80 1160-1243 150-230 (258)
139 PRK10584 putative ABC transpor 99.3 7.7E-12 1.7E-16 134.3 9.6 78 1161-1242 143-222 (228)
140 cd03269 ABC_putative_ATPase Th 99.3 6.7E-12 1.4E-16 132.9 9.0 78 1161-1242 125-204 (210)
141 cd03265 ABC_DrrA DrrA is the A 99.3 7.2E-12 1.6E-16 133.6 9.3 79 1161-1243 128-209 (220)
142 PRK11248 tauB taurine transpor 99.3 7.7E-12 1.7E-16 135.8 9.6 77 1161-1241 125-204 (255)
143 cd03229 ABC_Class3 This class 99.3 9.7E-12 2.1E-16 127.3 9.7 74 1165-1242 101-177 (178)
144 cd03298 ABC_ThiQ_thiamine_tran 99.3 7.3E-12 1.6E-16 132.7 9.2 79 1161-1243 125-206 (211)
145 PRK13643 cbiO cobalt transport 99.3 9.4E-12 2E-16 137.7 10.4 80 1160-1243 140-221 (288)
146 cd03297 ABC_ModC_molybdenum_tr 99.3 7.6E-12 1.6E-16 132.8 9.3 79 1161-1243 128-209 (214)
147 cd03218 ABC_YhbG The ABC trans 99.3 8.1E-12 1.8E-16 134.6 9.6 80 1160-1243 129-210 (232)
148 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 8.3E-12 1.8E-16 134.6 9.7 80 1160-1243 128-209 (236)
149 PRK11308 dppF dipeptide transp 99.3 8.7E-12 1.9E-16 139.6 10.2 80 1160-1243 150-232 (327)
150 cd03266 ABC_NatA_sodium_export 99.3 7E-12 1.5E-16 133.7 8.9 79 1160-1242 132-212 (218)
151 PRK14242 phosphate transporter 99.3 9.9E-12 2.1E-16 135.8 10.3 80 1160-1243 145-225 (253)
152 TIGR00972 3a0107s01c2 phosphat 99.3 9.4E-12 2E-16 135.3 10.1 80 1160-1243 140-220 (247)
153 TIGR02315 ABC_phnC phosphonate 99.3 7.4E-12 1.6E-16 136.0 9.3 79 1161-1243 142-223 (243)
154 PRK13650 cbiO cobalt transport 99.3 8.2E-12 1.8E-16 137.6 9.7 80 1160-1243 136-217 (279)
155 TIGR03411 urea_trans_UrtD urea 99.3 9.9E-12 2.2E-16 134.8 10.2 80 1160-1243 139-219 (242)
156 cd03263 ABC_subfamily_A The AB 99.3 8E-12 1.7E-16 133.5 9.3 79 1161-1243 130-209 (220)
157 COG1131 CcmA ABC-type multidru 99.3 8.1E-12 1.8E-16 137.3 9.6 81 1159-1243 131-214 (293)
158 COG3638 ABC-type phosphate/pho 99.3 3.8E-12 8.2E-17 126.5 6.1 84 1156-1243 139-225 (258)
159 PRK15093 antimicrobial peptide 99.3 9.2E-12 2E-16 140.2 10.0 80 1160-1243 154-236 (330)
160 cd03216 ABC_Carb_Monos_I This 99.3 1.3E-11 2.8E-16 124.0 10.1 75 1164-1242 82-158 (163)
161 cd03230 ABC_DR_subfamily_A Thi 99.3 1.1E-11 2.5E-16 126.1 9.7 74 1165-1242 96-171 (173)
162 cd03258 ABC_MetN_methionine_tr 99.3 8.9E-12 1.9E-16 134.3 9.4 80 1160-1243 136-218 (233)
163 PRK10851 sulfate/thiosulfate t 99.3 9.3E-12 2E-16 140.6 9.9 80 1160-1243 132-214 (353)
164 PRK13631 cbiO cobalt transport 99.3 1.1E-11 2.3E-16 138.5 10.3 80 1160-1243 172-253 (320)
165 PRK09452 potA putrescine/sperm 99.3 9.3E-12 2E-16 141.2 9.9 80 1160-1243 140-222 (375)
166 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 1.2E-11 2.5E-16 131.8 10.1 79 1160-1242 138-218 (224)
167 PRK11264 putative amino-acid A 99.3 1.1E-11 2.4E-16 135.2 10.2 80 1160-1243 140-221 (250)
168 cd03294 ABC_Pro_Gly_Bertaine T 99.3 9.4E-12 2E-16 136.5 9.6 80 1160-1243 156-238 (269)
169 PRK13638 cbiO cobalt transport 99.3 1E-11 2.2E-16 136.7 9.9 80 1160-1243 132-213 (271)
170 PRK11629 lolD lipoprotein tran 99.3 1.1E-11 2.4E-16 133.4 10.0 78 1161-1242 142-221 (233)
171 cd03301 ABC_MalK_N The N-termi 99.3 9E-12 2E-16 132.3 9.1 79 1160-1242 126-207 (213)
172 PRK10908 cell division protein 99.3 1.1E-11 2.3E-16 132.5 9.7 79 1161-1243 134-214 (222)
173 PRK13647 cbiO cobalt transport 99.3 1E-11 2.3E-16 136.4 9.9 80 1160-1243 134-215 (274)
174 PRK14273 phosphate ABC transpo 99.3 1.2E-11 2.6E-16 135.1 10.2 80 1160-1243 146-226 (254)
175 PRK11432 fbpC ferric transport 99.3 9.8E-12 2.1E-16 140.1 9.8 80 1160-1243 132-214 (351)
176 TIGR02770 nickel_nikD nickel i 99.3 1E-11 2.3E-16 133.2 9.6 80 1160-1243 121-203 (230)
177 cd03254 ABCC_Glucan_exporter_l 99.3 1.3E-11 2.9E-16 132.7 10.4 79 1161-1243 136-214 (229)
178 PRK13641 cbiO cobalt transport 99.3 1.2E-11 2.7E-16 136.9 10.4 80 1160-1243 141-222 (287)
179 cd03279 ABC_sbcCD SbcCD and ot 99.3 6.9E-12 1.5E-16 132.4 8.0 78 20-103 1-83 (213)
180 PRK13634 cbiO cobalt transport 99.3 1.2E-11 2.5E-16 137.1 10.2 80 1160-1243 141-223 (290)
181 PRK11831 putative ABC transpor 99.3 1.1E-11 2.3E-16 136.3 9.7 80 1160-1243 139-221 (269)
182 TIGR01187 potA spermidine/putr 99.3 1.2E-11 2.6E-16 139.0 10.3 80 1160-1243 96-178 (325)
183 COG4172 ABC-type uncharacteriz 99.3 6.3E-12 1.4E-16 133.5 7.5 83 1157-1243 419-504 (534)
184 PRK11614 livF leucine/isoleuci 99.3 1.1E-11 2.5E-16 133.8 9.8 79 1161-1243 134-214 (237)
185 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 1.4E-11 2.9E-16 133.4 10.4 79 1161-1243 136-214 (238)
186 PRK11000 maltose/maltodextrin 99.3 1E-11 2.2E-16 141.6 9.7 80 1160-1243 129-211 (369)
187 TIGR01277 thiQ thiamine ABC tr 99.3 1.1E-11 2.4E-16 131.3 9.2 80 1160-1243 124-206 (213)
188 PRK14239 phosphate transporter 99.3 1.4E-11 3E-16 134.6 10.1 80 1160-1243 144-224 (252)
189 COG4608 AppF ABC-type oligopep 99.3 7.5E-12 1.6E-16 129.1 7.4 82 1158-1243 103-187 (268)
190 TIGR03522 GldA_ABC_ATP gliding 99.3 1.3E-11 2.9E-16 137.5 10.1 80 1160-1243 129-209 (301)
191 PRK14247 phosphate ABC transpo 99.3 1.5E-11 3.3E-16 134.0 10.2 80 1160-1243 142-222 (250)
192 PRK10070 glycine betaine trans 99.3 1.6E-11 3.5E-16 139.8 10.7 80 1160-1243 160-242 (400)
193 PRK13646 cbiO cobalt transport 99.3 1.5E-11 3.3E-16 136.1 10.3 80 1160-1243 141-223 (286)
194 PRK09536 btuD corrinoid ABC tr 99.3 1.5E-11 3.3E-16 140.1 10.4 81 1159-1243 134-216 (402)
195 PRK13645 cbiO cobalt transport 99.3 1.4E-11 3.1E-16 136.9 10.0 80 1160-1243 146-228 (289)
196 COG4619 ABC-type uncharacteriz 99.3 1.4E-11 2.9E-16 114.6 8.0 82 1159-1244 128-212 (223)
197 cd03369 ABCC_NFT1 Domain 2 of 99.3 2.2E-11 4.7E-16 128.5 10.8 79 1161-1243 122-200 (207)
198 COG4525 TauB ABC-type taurine 99.3 1E-11 2.2E-16 118.5 7.3 89 1160-1252 128-220 (259)
199 COG3842 PotA ABC-type spermidi 99.3 5.3E-12 1.2E-16 137.8 6.2 85 1155-1243 127-214 (352)
200 cd03251 ABCC_MsbA MsbA is an e 99.3 1.7E-11 3.7E-16 132.3 10.2 79 1161-1243 135-213 (234)
201 cd03224 ABC_TM1139_LivF_branch 99.3 1.5E-11 3.3E-16 131.7 9.7 79 1161-1243 129-209 (222)
202 cd03270 ABC_UvrA_I The excisio 99.3 1.9E-11 4.2E-16 129.9 10.4 81 1160-1243 133-215 (226)
203 PRK14269 phosphate ABC transpo 99.3 1.7E-11 3.7E-16 133.0 10.2 79 1161-1243 139-218 (246)
204 PRK14250 phosphate ABC transpo 99.3 1.7E-11 3.6E-16 132.5 10.1 80 1160-1243 127-209 (241)
205 TIGR03265 PhnT2 putative 2-ami 99.3 1.4E-11 3E-16 139.2 9.8 80 1160-1243 130-212 (353)
206 PRK10619 histidine/lysine/argi 99.3 1.6E-11 3.5E-16 134.2 10.0 79 1161-1243 149-229 (257)
207 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 2.4E-11 5.3E-16 118.9 10.2 73 1164-1242 70-143 (144)
208 PRK14235 phosphate transporter 99.3 1.8E-11 4E-16 134.2 10.4 80 1160-1243 159-239 (267)
209 TIGR03608 L_ocin_972_ABC putat 99.3 1.4E-11 3E-16 130.2 9.1 75 1161-1239 131-206 (206)
210 PRK10771 thiQ thiamine transpo 99.2 1.4E-11 3.1E-16 132.4 9.3 80 1160-1243 125-207 (232)
211 PRK14259 phosphate ABC transpo 99.2 1.9E-11 4.1E-16 134.2 10.3 78 1160-1241 150-228 (269)
212 cd03295 ABC_OpuCA_Osmoprotecti 99.2 1.4E-11 3E-16 133.5 9.1 80 1160-1243 131-213 (242)
213 COG4559 ABC-type hemin transpo 99.2 1.6E-11 3.5E-16 119.2 8.4 89 1155-1243 126-218 (259)
214 COG4161 ArtP ABC-type arginine 99.2 1.5E-11 3.2E-16 113.2 7.7 81 1159-1243 136-218 (242)
215 PRK09493 glnQ glutamine ABC tr 99.2 1.6E-11 3.4E-16 133.0 9.4 79 1161-1243 133-213 (240)
216 PRK13636 cbiO cobalt transport 99.2 1.7E-11 3.7E-16 135.4 9.9 80 1160-1243 137-219 (283)
217 PRK14274 phosphate ABC transpo 99.2 2E-11 4.3E-16 133.7 10.3 80 1160-1243 151-231 (259)
218 PRK10247 putative ABC transpor 99.2 2E-11 4.3E-16 130.3 10.0 80 1160-1243 133-214 (225)
219 PRK14270 phosphate ABC transpo 99.2 1.9E-11 4.2E-16 133.2 10.1 79 1161-1243 144-223 (251)
220 TIGR02142 modC_ABC molybdenum 99.2 1.7E-11 3.6E-16 139.6 10.0 80 1160-1243 127-209 (354)
221 cd03267 ABC_NatA_like Similar 99.2 1.7E-11 3.7E-16 131.8 9.5 78 1161-1242 150-230 (236)
222 PRK14253 phosphate ABC transpo 99.2 2.2E-11 4.8E-16 132.7 10.5 80 1160-1243 141-221 (249)
223 cd03222 ABC_RNaseL_inhibitor T 99.2 2.6E-11 5.6E-16 121.9 10.1 76 1165-1244 72-150 (177)
224 PRK14267 phosphate ABC transpo 99.2 1.9E-11 4.1E-16 133.5 9.9 80 1160-1243 145-225 (253)
225 PRK11231 fecE iron-dicitrate t 99.2 1.7E-11 3.7E-16 133.9 9.5 80 1160-1243 134-215 (255)
226 PRK14272 phosphate ABC transpo 99.2 2.2E-11 4.9E-16 133.0 10.4 80 1160-1243 144-224 (252)
227 PRK14262 phosphate ABC transpo 99.2 2.1E-11 4.6E-16 132.9 10.2 80 1160-1243 142-222 (250)
228 PRK13644 cbiO cobalt transport 99.2 1.9E-11 4.2E-16 134.3 9.8 79 1161-1243 133-212 (274)
229 PRK11144 modC molybdate transp 99.2 1.8E-11 4E-16 139.0 9.9 80 1160-1243 124-206 (352)
230 cd03244 ABCC_MRP_domain2 Domai 99.2 2.5E-11 5.4E-16 129.8 10.4 79 1161-1243 136-214 (221)
231 PRK14256 phosphate ABC transpo 99.2 2E-11 4.3E-16 133.2 9.9 79 1161-1243 145-224 (252)
232 PRK10744 pstB phosphate transp 99.2 2.3E-11 5E-16 133.1 10.4 79 1161-1243 153-232 (260)
233 PRK14248 phosphate ABC transpo 99.2 2.2E-11 4.8E-16 133.9 10.2 80 1160-1243 160-240 (268)
234 PRK11124 artP arginine transpo 99.2 2E-11 4.4E-16 132.3 9.8 79 1161-1243 138-218 (242)
235 cd03217 ABC_FeS_Assembly ABC-t 99.2 2.5E-11 5.3E-16 126.9 10.0 77 1163-1243 103-182 (200)
236 PRK14238 phosphate transporter 99.2 2.4E-11 5.3E-16 133.4 10.4 80 1160-1243 163-243 (271)
237 PRK10575 iron-hydroxamate tran 99.2 1.8E-11 4E-16 134.2 9.4 80 1160-1243 143-225 (265)
238 PRK14255 phosphate ABC transpo 99.2 2.3E-11 4.9E-16 132.8 10.1 80 1160-1243 144-224 (252)
239 PRK14275 phosphate ABC transpo 99.2 2.4E-11 5.1E-16 134.4 10.3 80 1160-1243 178-258 (286)
240 PRK15112 antimicrobial peptide 99.2 2E-11 4.3E-16 133.9 9.7 79 1161-1243 146-227 (267)
241 PRK14249 phosphate ABC transpo 99.2 2.5E-11 5.3E-16 132.4 10.3 80 1160-1243 143-223 (251)
242 COG3096 MukB Uncharacterized p 99.2 1.6E-05 3.6E-10 90.2 90.2 48 17-66 2-49 (1480)
243 PRK13635 cbiO cobalt transport 99.2 2.2E-11 4.7E-16 134.1 10.0 80 1160-1243 136-217 (279)
244 PRK14240 phosphate transporter 99.2 2.6E-11 5.6E-16 132.2 10.5 80 1160-1243 142-222 (250)
245 PRK14265 phosphate ABC transpo 99.2 2.7E-11 5.8E-16 133.2 10.6 77 1160-1240 157-234 (274)
246 PRK13649 cbiO cobalt transport 99.2 2.3E-11 4.9E-16 134.8 10.1 80 1160-1243 141-222 (280)
247 PRK14241 phosphate transporter 99.2 2.4E-11 5.1E-16 133.0 10.1 77 1160-1240 144-221 (258)
248 PRK14244 phosphate ABC transpo 99.2 2.4E-11 5.2E-16 132.4 10.2 79 1161-1243 146-225 (251)
249 cd03253 ABCC_ATM1_transporter 99.2 2.6E-11 5.6E-16 131.1 10.3 79 1161-1243 134-212 (236)
250 cd03215 ABC_Carb_Monos_II This 99.2 2.2E-11 4.8E-16 125.2 9.3 74 1165-1242 105-180 (182)
251 COG4988 CydD ABC-type transpor 99.2 1.8E-11 3.8E-16 138.8 9.2 78 1162-1243 454-531 (559)
252 PRK11300 livG leucine/isoleuci 99.2 2E-11 4.4E-16 133.6 9.5 80 1160-1243 149-231 (255)
253 PRK10253 iron-enterobactin tra 99.2 2E-11 4.3E-16 133.9 9.4 80 1160-1243 139-221 (265)
254 PRK13548 hmuV hemin importer A 99.2 2.4E-11 5.3E-16 132.5 10.0 84 1160-1243 130-218 (258)
255 TIGR03415 ABC_choXWV_ATP choli 99.2 2.3E-11 5.1E-16 137.3 10.1 80 1160-1243 160-242 (382)
256 PRK13639 cbiO cobalt transport 99.2 2.6E-11 5.7E-16 133.5 10.3 80 1160-1243 133-214 (275)
257 PRK13633 cobalt transporter AT 99.2 2.2E-11 4.7E-16 134.6 9.7 80 1160-1243 140-221 (280)
258 PRK09984 phosphonate/organopho 99.2 1.9E-11 4.1E-16 134.1 9.2 80 1160-1243 148-230 (262)
259 PRK11701 phnK phosphonate C-P 99.2 2.4E-11 5.2E-16 132.9 9.9 80 1160-1243 147-229 (258)
260 PRK13652 cbiO cobalt transport 99.2 2.4E-11 5.2E-16 133.9 9.8 80 1160-1243 133-215 (277)
261 TIGR03410 urea_trans_UrtE urea 99.2 2.5E-11 5.4E-16 130.6 9.7 79 1161-1243 128-209 (230)
262 PRK14257 phosphate ABC transpo 99.2 2.9E-11 6.3E-16 135.4 10.5 79 1161-1243 222-301 (329)
263 TIGR03771 anch_rpt_ABC anchore 99.2 2.7E-11 5.9E-16 129.0 9.8 75 1161-1239 110-186 (223)
264 TIGR02769 nickel_nikE nickel i 99.2 2.4E-11 5.2E-16 133.2 9.6 80 1160-1243 146-228 (265)
265 PRK13545 tagH teichoic acids e 99.2 2.7E-11 5.9E-16 138.8 10.3 79 1160-1242 139-219 (549)
266 TIGR03740 galliderm_ABC gallid 99.2 2.2E-11 4.7E-16 130.2 9.0 80 1160-1243 120-201 (223)
267 PRK14243 phosphate transporter 99.2 3.2E-11 6.9E-16 132.1 10.4 77 1160-1240 147-224 (264)
268 TIGR02323 CP_lyasePhnK phospho 99.2 2.6E-11 5.7E-16 132.4 9.8 80 1160-1243 144-226 (253)
269 PRK14261 phosphate ABC transpo 99.2 2.7E-11 5.9E-16 132.2 9.8 80 1160-1243 145-225 (253)
270 PRK13640 cbiO cobalt transport 99.2 2.8E-11 6E-16 133.7 9.9 80 1160-1243 139-220 (282)
271 PRK10418 nikD nickel transport 99.2 2.9E-11 6.2E-16 131.9 9.8 80 1160-1243 136-218 (254)
272 PRK13642 cbiO cobalt transport 99.2 2.8E-11 6.1E-16 133.4 9.8 79 1161-1243 137-217 (277)
273 cd03240 ABC_Rad50 The catalyti 99.2 2.1E-11 4.6E-16 127.0 8.3 76 22-103 1-78 (204)
274 TIGR03005 ectoine_ehuA ectoine 99.2 2.7E-11 5.8E-16 132.2 9.5 79 1161-1243 143-224 (252)
275 PRK14251 phosphate ABC transpo 99.2 3E-11 6.5E-16 131.8 9.9 80 1160-1243 143-223 (251)
276 PRK14237 phosphate transporter 99.2 3.6E-11 7.8E-16 131.9 10.5 80 1160-1243 159-239 (267)
277 PRK14271 phosphate ABC transpo 99.2 3.4E-11 7.4E-16 132.4 10.3 80 1160-1243 159-239 (276)
278 cd03232 ABC_PDR_domain2 The pl 99.2 3E-11 6.5E-16 125.3 9.3 74 1164-1241 108-184 (192)
279 cd03278 ABC_SMC_barmotin Barmo 99.2 1.5E-11 3.3E-16 127.1 7.0 82 22-104 1-84 (197)
280 TIGR03873 F420-0_ABC_ATP propo 99.2 3.1E-11 6.8E-16 131.9 9.8 79 1161-1243 134-214 (256)
281 cd03213 ABCG_EPDR ABCG transpo 99.2 3.7E-11 8E-16 124.7 9.9 75 1164-1242 111-188 (194)
282 PRK13648 cbiO cobalt transport 99.2 3.2E-11 6.9E-16 132.6 9.9 79 1161-1243 139-219 (269)
283 TIGR02982 heterocyst_DevA ABC 99.2 3E-11 6.5E-16 128.7 9.3 78 1161-1242 138-217 (220)
284 TIGR02324 CP_lyasePhnL phospho 99.2 2.8E-11 6E-16 129.6 9.1 76 1161-1240 146-223 (224)
285 cd03234 ABCG_White The White s 99.2 3.9E-11 8.4E-16 128.5 10.1 80 1160-1243 139-221 (226)
286 COG2274 SunT ABC-type bacterio 99.2 2.1E-11 4.6E-16 147.5 9.0 78 1162-1243 607-684 (709)
287 PRK10895 lipopolysaccharide AB 99.2 3.1E-11 6.7E-16 130.8 9.3 80 1160-1243 133-214 (241)
288 PRK14254 phosphate ABC transpo 99.2 4E-11 8.7E-16 132.3 10.3 79 1160-1242 176-256 (285)
289 PRK09544 znuC high-affinity zi 99.2 3.1E-11 6.8E-16 130.4 9.2 77 1160-1240 116-195 (251)
290 PRK11607 potG putrescine trans 99.2 3.3E-11 7.1E-16 137.1 9.7 80 1160-1243 145-227 (377)
291 COG3839 MalK ABC-type sugar tr 99.2 8.5E-12 1.9E-16 135.4 4.6 85 1155-1243 124-211 (338)
292 TIGR01978 sufC FeS assembly AT 99.2 4E-11 8.7E-16 130.4 9.8 79 1161-1243 140-222 (243)
293 cd00267 ABC_ATPase ABC (ATP-bi 99.2 5.3E-11 1.1E-15 119.3 9.9 75 1164-1242 80-156 (157)
294 PRK13632 cbiO cobalt transport 99.2 3.3E-11 7.1E-16 132.5 9.2 79 1161-1243 139-219 (271)
295 PRK13543 cytochrome c biogenes 99.2 4.2E-11 9.1E-16 126.7 9.6 77 1160-1240 133-211 (214)
296 PRK09580 sufC cysteine desulfu 99.2 4.6E-11 1E-15 130.3 10.2 76 1164-1243 145-223 (248)
297 PRK04778 septation ring format 99.2 7.2E-07 1.6E-11 108.1 47.1 79 1042-1125 449-528 (569)
298 PRK13547 hmuV hemin importer A 99.2 4.2E-11 9.1E-16 130.9 9.7 84 1160-1243 141-232 (272)
299 cd03300 ABC_PotA_N PotA is an 99.2 4.6E-11 1E-15 128.3 9.9 79 1161-1243 127-208 (232)
300 PRK14236 phosphate transporter 99.2 4.7E-11 1E-15 131.4 10.1 80 1160-1243 164-244 (272)
301 PRK14260 phosphate ABC transpo 99.2 5E-11 1.1E-15 130.4 10.1 78 1160-1241 146-224 (259)
302 COG4555 NatA ABC-type Na+ tran 99.2 4.6E-11 9.9E-16 115.2 8.4 80 1160-1243 129-210 (245)
303 PRK14263 phosphate ABC transpo 99.2 8.6E-11 1.9E-15 128.2 11.8 76 1161-1240 146-222 (261)
304 PRK10419 nikE nickel transport 99.2 5E-11 1.1E-15 130.7 10.0 80 1160-1243 147-229 (268)
305 PRK03695 vitamin B12-transport 99.2 5.2E-11 1.1E-15 129.0 9.9 84 1160-1243 122-210 (248)
306 PRK14258 phosphate ABC transpo 99.2 5.7E-11 1.2E-15 130.0 10.2 78 1160-1241 146-226 (261)
307 cd03299 ABC_ModC_like Archeal 99.2 5.3E-11 1.1E-15 128.1 9.5 79 1161-1243 126-207 (235)
308 PRK10938 putative molybdenum t 99.2 4.4E-11 9.6E-16 144.1 9.8 81 1159-1243 130-212 (490)
309 PRK11174 cysteine/glutathione 99.2 4.8E-11 1E-15 147.6 10.3 77 1163-1243 484-560 (588)
310 PRK15056 manganese/iron transp 99.2 5.6E-11 1.2E-15 130.8 9.7 76 1160-1239 138-215 (272)
311 PRK15439 autoinducer 2 ABC tra 99.2 4.5E-11 9.7E-16 144.1 9.7 80 1160-1243 399-480 (510)
312 TIGR02203 MsbA_lipidA lipid A 99.2 5.9E-11 1.3E-15 146.8 10.8 76 1163-1242 468-543 (571)
313 PRK14252 phosphate ABC transpo 99.2 7.4E-11 1.6E-15 129.5 10.3 79 1161-1243 158-237 (265)
314 PRK09700 D-allose transporter 99.2 5.8E-11 1.3E-15 143.7 10.3 80 1160-1243 405-486 (510)
315 CHL00131 ycf16 sulfate ABC tra 99.2 7.1E-11 1.5E-15 129.1 10.0 79 1161-1243 147-229 (252)
316 PRK10982 galactose/methyl gala 99.2 5E-11 1.1E-15 143.5 9.6 81 1160-1244 387-469 (491)
317 cd03288 ABCC_SUR2 The SUR doma 99.2 8.4E-11 1.8E-15 128.3 10.5 79 1161-1243 153-231 (257)
318 cd03289 ABCC_CFTR2 The CFTR su 99.2 7.7E-11 1.7E-15 128.3 10.1 78 1162-1243 136-213 (275)
319 PRK10982 galactose/methyl gala 99.2 6.9E-11 1.5E-15 142.3 10.7 80 1160-1243 130-211 (491)
320 PRK13549 xylose transporter AT 99.2 5.4E-11 1.2E-15 143.6 9.8 80 1160-1243 401-482 (506)
321 PRK14266 phosphate ABC transpo 99.2 8.4E-11 1.8E-15 128.2 10.3 79 1161-1243 143-222 (250)
322 cd03271 ABC_UvrA_II The excisi 99.2 1E-10 2.2E-15 125.0 10.6 82 1160-1242 165-247 (261)
323 PRK11288 araG L-arabinose tran 99.2 6.1E-11 1.3E-15 143.0 9.9 80 1160-1243 392-473 (501)
324 PRK15134 microcin C ABC transp 99.2 5.9E-11 1.3E-15 144.1 9.8 80 1160-1243 152-234 (529)
325 PRK15439 autoinducer 2 ABC tra 99.2 7.4E-11 1.6E-15 142.3 10.5 80 1160-1243 136-217 (510)
326 TIGR03269 met_CoM_red_A2 methy 99.2 5.8E-11 1.3E-15 144.1 9.7 80 1160-1243 164-246 (520)
327 cd03250 ABCC_MRP_domain1 Domai 99.2 1.1E-10 2.3E-15 122.9 10.5 78 1161-1242 124-203 (204)
328 PRK13546 teichoic acids export 99.2 9.3E-11 2E-15 127.4 10.2 79 1161-1243 140-220 (264)
329 PRK10762 D-ribose transporter 99.2 7.4E-11 1.6E-15 142.3 10.4 80 1160-1243 137-218 (501)
330 TIGR00968 3a0106s01 sulfate AB 99.2 7.8E-11 1.7E-15 126.9 9.4 79 1161-1243 127-208 (237)
331 PRK09700 D-allose transporter 99.2 7.9E-11 1.7E-15 142.5 10.6 81 1159-1243 140-222 (510)
332 cd03233 ABC_PDR_domain1 The pl 99.2 1E-10 2.2E-15 122.3 9.9 80 1160-1243 114-197 (202)
333 PRK14246 phosphate ABC transpo 99.2 1E-10 2.2E-15 127.2 10.3 79 1161-1243 150-229 (257)
334 PRK14264 phosphate ABC transpo 99.2 9.2E-11 2E-15 130.9 10.1 79 1160-1242 196-276 (305)
335 cd03290 ABCC_SUR1_N The SUR do 99.2 9.8E-11 2.1E-15 124.7 9.9 78 1161-1242 137-217 (218)
336 PF13476 AAA_23: AAA domain; P 99.2 1.9E-11 4.1E-16 129.4 4.3 49 24-74 1-49 (202)
337 TIGR02633 xylG D-xylose ABC tr 99.2 7E-11 1.5E-15 142.7 9.8 80 1160-1243 399-480 (500)
338 PRK11288 araG L-arabinose tran 99.2 9.2E-11 2E-15 141.5 10.7 80 1160-1243 136-217 (501)
339 PRK15134 microcin C ABC transp 99.2 6.9E-11 1.5E-15 143.6 9.7 80 1160-1243 421-503 (529)
340 PRK10762 D-ribose transporter 99.2 7.7E-11 1.7E-15 142.1 10.0 80 1160-1243 391-472 (501)
341 PRK13549 xylose transporter AT 99.2 8.6E-11 1.9E-15 141.9 10.5 80 1160-1243 139-220 (506)
342 PRK15177 Vi polysaccharide exp 99.2 7.8E-11 1.7E-15 124.1 8.8 80 1160-1243 100-180 (213)
343 PRK13657 cyclic beta-1,2-gluca 99.2 8.2E-11 1.8E-15 145.3 10.3 78 1162-1243 469-546 (588)
344 PRK13409 putative ATPase RIL; 99.1 7E-11 1.5E-15 142.8 9.3 78 1160-1241 449-529 (590)
345 COG4987 CydC ABC-type transpor 99.1 8.6E-11 1.9E-15 130.7 9.2 78 1162-1243 472-549 (573)
346 PRK11176 lipid transporter ATP 99.1 8.3E-11 1.8E-15 145.5 10.1 77 1163-1243 479-555 (582)
347 PRK10261 glutathione transport 99.1 7.5E-11 1.6E-15 145.1 9.6 80 1160-1243 164-246 (623)
348 PRK10261 glutathione transport 99.1 8.6E-11 1.9E-15 144.6 10.1 80 1160-1243 459-541 (623)
349 cd03231 ABC_CcmA_heme_exporter 99.1 8.9E-11 1.9E-15 122.9 8.7 75 1161-1239 122-198 (201)
350 cd03236 ABC_RNaseL_inhibitor_d 99.1 1.7E-10 3.6E-15 124.5 10.9 78 1161-1242 136-215 (255)
351 cd03291 ABCC_CFTR1 The CFTR su 99.1 1.6E-10 3.4E-15 126.5 10.6 79 1161-1243 156-235 (282)
352 TIGR02633 xylG D-xylose ABC tr 99.1 1E-10 2.2E-15 141.3 10.1 80 1160-1243 137-218 (500)
353 PRK13540 cytochrome c biogenes 99.1 7.8E-11 1.7E-15 123.3 7.5 73 1161-1237 124-197 (200)
354 TIGR03269 met_CoM_red_A2 methy 99.1 1E-10 2.3E-15 141.9 9.7 80 1160-1243 423-505 (520)
355 TIGR01166 cbiO cobalt transpor 99.1 6.5E-11 1.4E-15 123.0 6.8 64 1161-1228 124-188 (190)
356 PRK13538 cytochrome c biogenes 99.1 1.1E-10 2.3E-15 122.8 8.3 75 1160-1238 125-201 (204)
357 TIGR01192 chvA glucan exporter 99.1 1.6E-10 3.5E-15 141.6 10.5 78 1162-1243 469-546 (585)
358 PRK10790 putative multidrug tr 99.1 1.6E-10 3.4E-15 143.1 10.4 77 1163-1243 475-551 (592)
359 cd03277 ABC_SMC5_euk Eukaryoti 99.1 1.4E-10 3E-15 121.3 8.4 84 1159-1242 121-210 (213)
360 cd03279 ABC_sbcCD SbcCD and ot 99.1 3E-10 6.4E-15 120.0 10.7 84 1159-1242 118-209 (213)
361 KOG0058 Peptide exporter, ABC 99.1 1.5E-10 3.3E-15 133.9 9.0 78 1162-1243 602-679 (716)
362 cd03276 ABC_SMC6_euk Eukaryoti 99.1 2E-10 4.3E-15 119.0 8.8 86 1156-1241 101-190 (198)
363 KOG0057 Mitochondrial Fe/S clu 99.1 1.8E-10 3.9E-15 128.3 9.0 78 1162-1243 485-562 (591)
364 PRK13539 cytochrome c biogenes 99.1 1.5E-10 3.3E-15 121.8 8.2 75 1161-1240 124-199 (207)
365 PRK13409 putative ATPase RIL; 99.1 2.5E-10 5.3E-15 138.1 10.9 79 1160-1242 208-287 (590)
366 PRK10636 putative ABC transpor 99.1 2.1E-10 4.6E-15 141.2 10.0 77 1160-1242 426-503 (638)
367 PRK10789 putative multidrug tr 99.1 2.3E-10 5E-15 140.2 10.4 78 1162-1243 449-526 (569)
368 PRK10938 putative molybdenum t 99.1 1.7E-10 3.7E-15 139.1 8.9 80 1160-1243 397-480 (490)
369 cd03227 ABC_Class2 ABC-type Cl 99.1 3.4E-10 7.4E-15 113.5 9.7 80 1164-1243 77-157 (162)
370 COG0411 LivG ABC-type branched 99.1 1.9E-10 4.1E-15 115.9 7.7 99 1157-1259 142-247 (250)
371 TIGR03375 type_I_sec_LssB type 99.1 2.2E-10 4.8E-15 144.3 10.3 77 1163-1243 600-676 (694)
372 COG0410 LivF ABC-type branched 99.1 3.9E-10 8.5E-15 112.7 9.8 83 1157-1243 129-214 (237)
373 COG0396 sufC Cysteine desulfur 99.1 3.4E-10 7.3E-15 112.4 9.1 76 1164-1243 144-222 (251)
374 KOG0055 Multidrug/pheromone ex 99.1 2.1E-10 4.6E-15 141.1 9.4 76 1164-1243 489-564 (1228)
375 COG4152 ABC-type uncharacteriz 99.1 1.4E-10 2.9E-15 115.4 6.3 82 1158-1243 124-207 (300)
376 PRK11160 cysteine/glutathione 99.1 2.9E-10 6.3E-15 139.3 10.3 78 1162-1243 473-550 (574)
377 TIGR01189 ccmA heme ABC export 99.1 1.9E-10 4.2E-15 120.2 7.4 72 1161-1237 124-196 (198)
378 COG1129 MglA ABC-type sugar tr 99.1 3.1E-10 6.8E-15 128.7 9.4 80 1160-1243 141-222 (500)
379 TIGR02204 MsbA_rel ABC transpo 99.1 3.7E-10 7.9E-15 139.8 10.9 78 1162-1243 474-551 (576)
380 TIGR01842 type_I_sec_PrtD type 99.1 3.4E-10 7.4E-15 138.2 10.4 78 1162-1243 452-530 (544)
381 PRK15064 ABC transporter ATP-b 99.1 3.7E-10 8E-15 137.3 10.2 78 1160-1243 434-512 (530)
382 COG1132 MdlB ABC-type multidru 99.1 3.6E-10 7.7E-15 139.0 9.8 78 1162-1243 463-540 (567)
383 TIGR01846 type_I_sec_HlyB type 99.1 4.2E-10 9E-15 141.6 10.5 78 1162-1243 591-668 (694)
384 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 3.9E-10 8.4E-15 141.9 10.2 75 1163-1243 587-661 (686)
385 TIGR01194 cyc_pep_trnsptr cycl 99.0 4.9E-10 1.1E-14 136.7 10.8 78 1162-1243 468-547 (555)
386 PRK13541 cytochrome c biogenes 99.0 2.8E-10 6E-15 118.6 7.4 72 1161-1236 120-192 (195)
387 COG4148 ModC ABC-type molybdat 99.0 2.8E-10 6.2E-15 115.4 7.0 81 1159-1243 123-206 (352)
388 PRK10522 multidrug transporter 99.0 4.7E-10 1E-14 136.9 10.4 77 1163-1243 448-526 (547)
389 COG4778 PhnL ABC-type phosphon 99.0 1.8E-10 3.8E-15 107.4 5.0 77 1161-1241 149-227 (235)
390 PRK11147 ABC transporter ATPas 99.0 5.1E-10 1.1E-14 138.4 10.5 90 1159-1259 435-526 (635)
391 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 4.9E-10 1.1E-14 136.6 10.3 78 1159-1242 438-516 (552)
392 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 4.4E-10 9.6E-15 137.0 9.7 77 1160-1242 157-234 (552)
393 TIGR03796 NHPM_micro_ABC1 NHPM 99.0 4.7E-10 1E-14 141.9 10.3 75 1163-1243 614-688 (710)
394 PRK10636 putative ABC transpor 99.0 4.4E-10 9.6E-15 138.3 9.7 78 1159-1242 144-222 (638)
395 TIGR01193 bacteriocin_ABC ABC- 99.0 5.1E-10 1.1E-14 141.4 10.4 76 1163-1243 610-685 (708)
396 TIGR02857 CydD thiol reductant 99.0 4.3E-10 9.4E-15 137.2 9.5 74 1162-1239 456-529 (529)
397 PRK11819 putative ABC transpor 99.0 4.7E-10 1E-14 136.7 9.6 78 1160-1243 159-237 (556)
398 PRK11147 ABC transporter ATPas 99.0 5.3E-10 1.1E-14 138.2 10.0 77 1160-1242 152-229 (635)
399 PRK15064 ABC transporter ATP-b 99.0 5.5E-10 1.2E-14 135.8 9.8 77 1160-1242 151-228 (530)
400 PLN03073 ABC transporter F fam 99.0 6.7E-10 1.5E-14 136.8 10.4 77 1160-1242 623-700 (718)
401 TIGR00630 uvra excinuclease AB 99.0 7.1E-10 1.5E-14 138.1 10.2 78 1160-1240 483-562 (924)
402 COG1119 ModF ABC-type molybden 99.0 8.3E-10 1.8E-14 111.2 8.6 84 1156-1243 163-250 (257)
403 TIGR01257 rim_protein retinal- 99.0 8.9E-10 1.9E-14 146.1 10.7 83 1157-1243 1054-1137(2272)
404 PLN03211 ABC transporter G-25; 99.0 8.2E-10 1.8E-14 135.4 9.4 79 1161-1243 203-284 (659)
405 TIGR00958 3a01208 Conjugate Tr 99.0 8.7E-10 1.9E-14 138.4 9.6 75 1163-1243 616-690 (711)
406 PLN03073 ABC transporter F fam 99.0 1.1E-09 2.5E-14 134.8 10.3 78 1159-1242 339-417 (718)
407 COG4604 CeuD ABC-type enteroch 99.0 3.9E-10 8.5E-15 108.2 4.7 86 1154-1243 125-213 (252)
408 TIGR00954 3a01203 Peroxysomal 99.0 1.3E-09 2.8E-14 134.8 10.4 73 1162-1240 580-652 (659)
409 PRK11819 putative ABC transpor 99.0 1.3E-09 2.7E-14 133.0 10.1 77 1159-1241 440-517 (556)
410 COG0488 Uup ATPase components 99.0 1.3E-09 2.7E-14 127.8 9.4 90 1159-1259 148-238 (530)
411 PTZ00265 multidrug resistance 99.0 1.4E-09 3E-14 144.6 10.8 77 1162-1242 1356-1434(1466)
412 PF13166 AAA_13: AAA domain 99.0 5.6E-05 1.2E-09 96.4 51.6 70 1161-1230 497-574 (712)
413 PTZ00265 multidrug resistance 99.0 1.7E-09 3.7E-14 143.8 10.8 78 1161-1242 576-655 (1466)
414 PRK00349 uvrA excinuclease ABC 98.9 1.7E-09 3.7E-14 135.1 10.0 78 1160-1240 485-564 (943)
415 COG4618 ArpD ABC-type protease 98.9 1.7E-09 3.8E-14 119.2 8.8 77 1163-1243 471-548 (580)
416 COG0488 Uup ATPase components 98.9 1.5E-09 3.3E-14 127.1 8.6 77 1159-1241 434-511 (530)
417 TIGR01257 rim_protein retinal- 98.9 2.1E-09 4.5E-14 142.8 9.7 80 1159-1242 2065-2146(2272)
418 PRK10535 macrolide transporter 98.9 2.6E-09 5.6E-14 132.1 9.9 79 1161-1243 141-220 (648)
419 PRK00635 excinuclease ABC subu 98.9 3.3E-09 7.2E-14 138.3 10.6 79 1160-1242 472-553 (1809)
420 KOG0062 ATPase component of AB 98.9 3.2E-09 7E-14 117.2 7.8 79 1159-1243 477-556 (582)
421 KOG0055 Multidrug/pheromone ex 98.9 3.6E-09 7.8E-14 130.5 8.7 78 1162-1243 1124-1201(1228)
422 PRK03918 chromosome segregatio 98.9 0.0018 3.9E-08 84.9 84.5 137 1110-1251 739-878 (880)
423 TIGR02868 CydC thiol reductant 98.9 3.4E-09 7.3E-14 129.4 8.1 61 1163-1227 469-529 (529)
424 PLN03232 ABC transporter C fam 98.9 5.3E-09 1.1E-13 140.8 10.5 77 1163-1243 1370-1446(1495)
425 PRK00064 recF recombination pr 98.8 1.5E-07 3.2E-12 107.3 20.3 139 1098-1242 180-357 (361)
426 PRK00349 uvrA excinuclease ABC 98.8 6.6E-09 1.4E-13 129.9 9.9 81 1160-1241 826-907 (943)
427 cd03227 ABC_Class2 ABC-type Cl 98.8 3.2E-09 6.9E-14 106.5 5.4 53 24-76 1-54 (162)
428 PLN03130 ABC transporter C fam 98.8 7.4E-09 1.6E-13 139.3 10.5 77 1163-1243 1373-1449(1622)
429 TIGR00957 MRP_assoc_pro multi 98.8 7.8E-09 1.7E-13 139.4 10.3 77 1163-1243 1420-1496(1522)
430 TIGR00955 3a01204 The Eye Pigm 98.8 6.3E-09 1.4E-13 128.1 8.6 76 1163-1242 165-243 (617)
431 COG5265 ATM1 ABC-type transpor 98.8 6.1E-09 1.3E-13 112.2 7.1 76 1164-1243 399-474 (497)
432 TIGR00630 uvra excinuclease AB 98.8 1E-08 2.2E-13 128.0 10.1 81 1160-1241 824-905 (924)
433 TIGR01271 CFTR_protein cystic 98.8 8.9E-09 1.9E-13 138.3 10.3 77 1163-1243 1352-1428(1490)
434 PLN03140 ABC transporter G fam 98.8 8.2E-09 1.8E-13 136.6 9.5 76 1162-1241 1017-1095(1470)
435 COG1245 Predicted ATPase, RNas 98.8 1.4E-08 3E-13 110.3 9.3 81 1160-1244 209-291 (591)
436 PTZ00243 ABC transporter; Prov 98.8 1.1E-08 2.4E-13 137.5 10.6 78 1163-1243 1444-1521(1560)
437 COG1101 PhnK ABC-type uncharac 98.8 1.2E-08 2.6E-13 99.9 7.7 79 1161-1243 145-226 (263)
438 COG3950 Predicted ATP-binding 98.8 2.6E-09 5.6E-14 111.4 2.6 48 20-69 1-49 (440)
439 COG4107 PhnK ABC-type phosphon 98.8 2.2E-08 4.8E-13 93.9 8.3 79 1161-1243 148-229 (258)
440 TIGR02680 conserved hypothetic 98.8 0.0043 9.3E-08 83.2 75.3 80 21-102 3-92 (1353)
441 TIGR00956 3a01205 Pleiotropic 98.8 1.3E-08 2.7E-13 135.6 9.1 79 1161-1243 206-288 (1394)
442 PRK00635 excinuclease ABC subu 98.8 1.7E-08 3.7E-13 131.8 9.9 80 1160-1240 805-885 (1809)
443 TIGR01271 CFTR_protein cystic 98.8 1.8E-08 3.9E-13 135.4 10.4 77 1162-1242 546-623 (1490)
444 COG4586 ABC-type uncharacteriz 98.8 1.8E-08 3.8E-13 102.5 7.8 79 1161-1243 153-234 (325)
445 PLN03232 ABC transporter C fam 98.7 1.6E-08 3.4E-13 136.3 9.6 76 1163-1242 739-815 (1495)
446 PLN03130 ABC transporter C fam 98.7 1.7E-08 3.8E-13 135.8 9.8 76 1163-1242 739-815 (1622)
447 COG1129 MglA ABC-type sugar tr 98.7 2.1E-08 4.6E-13 114.0 9.0 81 1160-1244 397-479 (500)
448 TIGR00957 MRP_assoc_pro multi 98.7 1.9E-08 4E-13 135.8 9.5 79 1161-1243 757-838 (1522)
449 KOG0056 Heavy metal exporter H 98.7 1.3E-08 2.8E-13 110.8 6.1 77 1164-1244 674-750 (790)
450 COG3845 ABC-type uncharacteriz 98.7 3.5E-08 7.7E-13 109.5 9.5 81 1159-1243 135-217 (501)
451 TIGR00956 3a01205 Pleiotropic 98.7 2.4E-08 5.3E-13 132.9 9.4 75 1164-1242 901-979 (1394)
452 COG4674 Uncharacterized ABC-ty 98.7 2.1E-08 4.5E-13 96.5 6.2 103 1153-1259 136-243 (249)
453 TIGR00611 recf recF protein. A 98.7 6.2E-07 1.3E-11 101.9 19.4 123 1100-1229 188-343 (365)
454 COG4133 CcmA ABC-type transpor 98.7 3E-08 6.5E-13 95.4 7.2 70 1156-1229 122-192 (209)
455 PF12128 DUF3584: Protein of u 98.7 0.0062 1.4E-07 81.2 91.6 129 41-179 15-155 (1201)
456 COG1245 Predicted ATPase, RNas 98.7 3.8E-08 8.1E-13 107.0 7.9 82 1159-1244 450-534 (591)
457 COG4136 ABC-type uncharacteriz 98.7 2.4E-08 5.3E-13 91.3 5.2 81 1156-1240 126-208 (213)
458 PTZ00243 ABC transporter; Prov 98.7 4.9E-08 1.1E-12 131.3 10.4 79 1161-1243 779-858 (1560)
459 PF11398 DUF2813: Protein of u 98.7 2.9E-08 6.3E-13 110.2 6.8 80 20-103 1-81 (373)
460 PLN03140 ABC transporter G fam 98.7 2E-08 4.3E-13 133.0 6.2 79 1161-1243 333-415 (1470)
461 KOG4674 Uncharacterized conser 98.6 0.0077 1.7E-07 78.5 92.4 41 747-787 662-702 (1822)
462 PF00261 Tropomyosin: Tropomyo 98.6 6.4E-05 1.4E-09 80.1 30.4 39 741-779 3-41 (237)
463 cd03242 ABC_RecF RecF is a rec 98.6 2.1E-07 4.5E-12 102.2 10.8 78 1162-1242 181-267 (270)
464 KOG0061 Transporter, ABC super 98.6 6.2E-08 1.3E-12 117.6 6.6 77 1163-1243 169-248 (613)
465 COG1106 Predicted ATPases [Gen 98.6 3.3E-08 7.2E-13 108.8 3.6 48 21-70 1-48 (371)
466 KOG0066 eIF2-interacting prote 98.6 9.9E-08 2.1E-12 102.4 6.7 75 1161-1241 701-776 (807)
467 KOG0927 Predicted transporter 98.5 9.6E-08 2.1E-12 106.5 5.5 89 1160-1259 505-594 (614)
468 PRK14079 recF recombination pr 98.5 3.8E-06 8.2E-11 95.3 18.5 134 1099-1242 178-341 (349)
469 cd03280 ABC_MutS2 MutS2 homolo 98.4 3.1E-07 6.7E-12 95.9 7.1 83 1155-1242 82-166 (200)
470 PF10174 Cast: RIM-binding pro 98.4 0.013 2.8E-07 72.0 71.8 15 1045-1059 525-539 (775)
471 COG0178 UvrA Excinuclease ATPa 98.4 3.3E-07 7.3E-12 107.2 7.6 97 1160-1257 818-918 (935)
472 KOG0927 Predicted transporter 98.4 4.7E-07 1E-11 101.2 7.4 81 1159-1244 216-297 (614)
473 COG4178 ABC-type uncharacteriz 98.4 5.1E-07 1.1E-11 105.1 8.1 76 1164-1243 515-590 (604)
474 PF07888 CALCOCO1: Calcium bin 98.4 0.01 2.2E-07 68.7 50.7 52 744-795 141-192 (546)
475 KOG0054 Multidrug resistance-a 98.4 5.3E-07 1.2E-11 114.8 8.4 77 1163-1243 642-719 (1381)
476 COG4637 Predicted ATPase [Gene 98.4 1.6E-07 3.5E-12 97.6 2.6 45 20-67 1-45 (373)
477 PF13558 SbcCD_C: Putative exo 98.3 8.6E-07 1.9E-11 78.1 5.9 54 1159-1212 27-89 (90)
478 COG1134 TagH ABC-type polysacc 98.3 2E-06 4.4E-11 87.5 9.0 80 1160-1243 143-224 (249)
479 COG4604 CeuD ABC-type enteroch 98.3 4E-07 8.6E-12 88.0 3.7 49 25-73 2-56 (252)
480 PRK04778 septation ring format 98.3 0.011 2.4E-07 72.2 42.8 51 739-789 105-155 (569)
481 PF07888 CALCOCO1: Calcium bin 98.3 0.016 3.5E-07 67.1 42.0 47 740-786 144-190 (546)
482 KOG0062 ATPase component of AB 98.3 7.4E-07 1.6E-11 99.0 6.0 76 1159-1240 193-269 (582)
483 COG0178 UvrA Excinuclease ATPa 98.3 1.7E-06 3.6E-11 101.6 8.9 83 1160-1244 477-560 (935)
484 COG4167 SapF ABC-type antimicr 98.3 2.2E-06 4.7E-11 81.6 7.6 82 1158-1243 143-227 (267)
485 PF13175 AAA_15: AAA ATPase do 98.3 5.6E-07 1.2E-11 107.2 4.6 69 1161-1229 338-414 (415)
486 COG1120 FepC ABC-type cobalami 98.3 8.4E-07 1.8E-11 93.0 5.2 27 43-69 27-53 (258)
487 KOG0059 Lipid exporter ABCA1 a 98.3 1.2E-06 2.6E-11 111.8 7.3 80 1160-1243 694-775 (885)
488 COG3593 Predicted ATP-dependen 98.3 6.6E-07 1.4E-11 104.0 4.5 63 20-85 1-63 (581)
489 PF13304 AAA_21: AAA domain; P 98.2 3E-06 6.6E-11 95.1 8.7 71 1158-1230 230-302 (303)
490 PRK01156 chromosome segregatio 98.2 0.076 1.7E-06 69.6 77.4 93 1159-1251 796-894 (895)
491 PF06160 EzrA: Septation ring 98.1 0.055 1.2E-06 65.7 47.7 46 1043-1088 446-492 (560)
492 PF01576 Myosin_tail_1: Myosin 98.1 8E-07 1.7E-11 112.0 1.4 36 373-408 274-309 (859)
493 KOG0976 Rho/Rac1-interacting s 98.1 0.049 1.1E-06 63.7 47.7 61 738-798 98-158 (1265)
494 COG1340 Uncharacterized archae 98.1 0.024 5.3E-07 59.9 34.9 48 296-343 30-77 (294)
495 cd03285 ABC_MSH2_euk MutS2 hom 98.1 6.8E-06 1.5E-10 86.7 7.1 78 1162-1242 87-168 (222)
496 smart00534 MUTSac ATPase domai 98.1 1.1E-05 2.4E-10 82.9 8.3 84 1151-1239 48-134 (185)
497 COG1340 Uncharacterized archae 98.1 0.026 5.7E-07 59.7 33.7 12 394-405 110-121 (294)
498 COG4637 Predicted ATPase [Gene 98.0 2.3E-05 4.9E-10 82.0 9.8 79 1163-1243 269-349 (373)
499 KOG0977 Nuclear envelope prote 98.0 0.031 6.6E-07 64.9 35.5 331 196-556 28-383 (546)
500 KOG0054 Multidrug resistance-a 98.0 1.6E-05 3.4E-10 101.8 9.9 77 1163-1243 1274-1350(1381)
No 1
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.2e-139 Score=1199.78 Aligned_cols=1207 Identities=47% Similarity=0.706 Sum_probs=1057.1
Q ss_pred CCCCCceEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCC
Q 000833 14 SRKWPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNL 93 (1263)
Q Consensus 14 ~~~~~~m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~ 93 (1263)
....++|+|..|.+.|||||+|.+++|||++.|++||||||||||||+|||.||||.+|+.+|.+++++|||++.++++.
T Consensus 78 ~~~~~RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~~~~~l 157 (1293)
T KOG0996|consen 78 EAGGPRLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSDGHPNL 157 (1293)
T ss_pred CCCCCeeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccCCCCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHH
Q 000833 94 DSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 173 (1263)
Q Consensus 94 ~~a~v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~ 173 (1263)
.+|+|+++|+-+.|-+++.|..+++.+++|+|+.|++++|.|+|||++++.++|..+|..-||+++++.|+|.||.|++|
T Consensus 158 ~SCsV~vhFq~iiD~~~~~~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~I 237 (1293)
T KOG0996|consen 158 QSCSVEVHFQKIIDKPGGTYEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQI 237 (1293)
T ss_pred cceeEEEeeeeeeccCCCceeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHH
Confidence 99999999998877777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHHHhHHhH
Q 000833 174 SLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWRFVCVSV 252 (1263)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 252 (1263)
++|+|...++++.+++++||+++|+.+|+..++....++..+++.+ +...+++ ..+ .+ .+.|
T Consensus 238 A~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k---~~e--------~e------k~~l 300 (1293)
T KOG0996|consen 238 AMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVK---LVE--------KE------KKAL 300 (1293)
T ss_pred HhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHH---HHH--------HH------HHHH
Confidence 9999999999999999999999999999999999999999999999 8888888 666 66 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000833 253 LDVKNEAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQD-NNKTLKELESVHNKYMRRQE 331 (1263)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ 331 (1263)
+..+..+..|+...+++..++..+.+..+.....++....+.+..+...+......+.. -....+..+.....+.....
T Consensus 301 E~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~ 380 (1293)
T KOG0996|consen 301 EGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAK 380 (1293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888888888888888888888777766663 33333333333344544445
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhH--
Q 000833 332 ELDNDLRVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFEN-- 409 (1263)
Q Consensus 332 ~l~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 409 (1263)
.+.+....++..+..++.+....++.++++...+.++..+++..+.++.+++.........+.+.+.++..+......
T Consensus 381 ~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~ 460 (1293)
T KOG0996|consen 381 ELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEE 460 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 566678888889999999999999999999999999999999999999999999999999999998888888876665
Q ss_pred HHHHhhhhccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 410 VFIADTQNIITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQM 489 (1263)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 489 (1263)
..+.+ + +..+..+...+..++...+.++..|..++.....+++.++++++.+....+.....+..++..+
T Consensus 461 ~~l~e----~------~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L 530 (1293)
T KOG0996|consen 461 RELDE----I------LDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKL 530 (1293)
T ss_pred HHHHH----H------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 2 5566778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 000833 490 DDILRRIDTKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQGSVLKAILQAK 569 (1263)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 569 (1263)
........+....+..+...+...+.++.+....+..+......+...+...++++.+++..+....++..++.++.+.+
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~k 610 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLK 610 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888999999999
Q ss_pred hcCCCCcceeecccccccChhHHHHHHHhcCCCCeEEEcchHHHHHHHHHHHhcCCCceeEEecccccccccccccCCCC
Q 000833 570 ESNQIEGIYGRMGDLGAIDAKYDIAVSTACPGLDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLFPKMKEHFST 649 (1263)
Q Consensus 570 ~~~~~~g~~g~l~~l~~~~~~~~~aie~~lg~L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 649 (1263)
..+.++||+|+||||+.++++|..||.++|++|+++||++.++|..||.+|++.++|++||++||.+.... ....++.+
T Consensus 611 esG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~-~~l~~i~t 689 (1293)
T KOG0996|consen 611 ESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQ-KKLAPITT 689 (1293)
T ss_pred HcCCCCccccccccccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhh-hccCCCCC
Confidence 99999999999999999999999999998878999999999999999999999999999999999986432 12344667
Q ss_pred CCcccccccccccCchhHHHHHHHHhcCeEEecChHHHHHHHhcCCCCcceEEeeCCceeecCccccCCCCCCCCCCCCc
Q 000833 650 PENVPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSGNKEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMGT 729 (1263)
Q Consensus 650 ~~~~~~l~d~i~~~~~~~~~~~~~~l~~~lv~~~~e~a~~~~~~~~~~~~~~vTldG~~i~~~G~i~Gg~~~~~~~~i~~ 729 (1263)
|.++|+++|+|.|.||.++++|++++++|+||++++.|.+++|++++- ++|||++|.+|.++|+||||+....+|.+|.
T Consensus 690 penvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr-~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~ 768 (1293)
T KOG0996|consen 690 PENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRR-WRVVTLDGSLIEKSGTMTGGGKKVKGGRMGT 768 (1293)
T ss_pred CCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCc-eEEEEecceeecccccccCCCCcCCCCCCCC
Confidence 788999999999999999999999999999999999999999987521 7899999999999999999998777777765
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 730 SIRPTSVSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLKA 809 (1263)
Q Consensus 730 ~~~~~~~~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~ 809 (1263)
..+..-.....+..++.+++........+..++..+...+..+...+..+...++.+..++..+-..+..++.++.++..
T Consensus 769 ~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~ 848 (1293)
T KOG0996|consen 769 SIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEA 848 (1293)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322356788899999999999888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 810 ASEPRKDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKLKAQKLKVDKIQSDIDKSSTEINRHK 889 (1263)
Q Consensus 810 ~~~~~~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~ 889 (1263)
..........++..++..++.++.+++++.+.-.. ++++..++..+..+....++..+.+++.+..+++.+...+....
T Consensus 849 ~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~ 927 (1293)
T KOG0996|consen 849 AVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLT 927 (1293)
T ss_pred HhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 75555555567778888899999999988744444 68888999999988888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 890 VQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLKKTV 969 (1263)
Q Consensus 890 ~~~~~le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~ 969 (1263)
..+......+......+..+...+.....+++.+...+..+.....++..++.+..+-+.++.+.+......++.+....
T Consensus 928 ~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~ 1007 (1293)
T KOG0996|consen 928 VAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSE 1007 (1293)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-hhhhhhhhccCChhhHHhhhhhhhhhchhhHHHHHH
Q 000833 970 DELRASEIEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLL-KHLEQIQKDLVDPEKLQATLADQTLSDACDLKRTLE 1048 (1263)
Q Consensus 970 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1048 (1263)
.++......+...++.+...+..+...+......++.+..... +....... ....++.+........+.+
T Consensus 1008 ~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~---------~~~~~Eeleae~~~~~i~e 1078 (1293)
T KOG0996|consen 1008 NELKAERIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIEL---------DVESPEELEAEMLEDNINE 1078 (1293)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhcccccc---------ccCChHHHHhhhcHhhHHH
Confidence 7777755567777777777777777766665554444322111 00000000 0011111111111122445
Q ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000833 1049 MVALLEAQLKEL-NPNLDSITEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQMI 1127 (1263)
Q Consensus 1049 ~i~~l~~~i~~l-~~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~l 1127 (1263)
.+..++..+..+ .|++..+.+|......|...+..++.....+++..+.+..++..+.+.||..|.-|+..+.++|+.+
T Consensus 1079 ~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmI 1158 (1293)
T KOG0996|consen 1079 KIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMI 1158 (1293)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHH
Q 000833 1128 TLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIV 1207 (1263)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~ 1207 (1263)
++||+++|.+.++.|||..||.|+|.||.+.|+.+..||||||++.+|||+||++.|+|+||||+|||||+||..|+..|
T Consensus 1159 T~GGdAeLElVDslDPFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIV 1238 (1293)
T KOG0996|consen 1159 TLGGDAELELVDSLDPFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIV 1238 (1293)
T ss_pred hcCCcceeEeeccCCCcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecCCCceeEEecCCccccc
Q 000833 1208 GHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFTVC 1259 (1263)
Q Consensus 1208 ~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~~~s~~~~~~~~~~~~~ 1259 (1263)
+.+|+++.++.||||||.+.+||++|+|++||++-.++|++|+|+|....+|
T Consensus 1239 anYIkErTkNAQFIIISLRnnMFELa~rLvGIYKtdn~Tksvti~~~~i~~~ 1290 (1293)
T KOG0996|consen 1239 ANYIKERTKNAQFIIISLRNNMFELANRLVGIYKTDNCTKSVTINPVEIAIL 1290 (1293)
T ss_pred HHHHHHhccCCeEEEEEehhhHHHHHhhheeeEeecCccceeEechhhhhhc
Confidence 9999999999999999999999999999999999999999999997666554
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-119 Score=1168.14 Aligned_cols=1152 Identities=27% Similarity=0.439 Sum_probs=806.6
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcc-hhhhhhhcccccccccc-cCCCCCceE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLNKVSELIHNST-NYQNLDSAG 97 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~-~~~~r~~~~~~~i~~g~-~~~~~~~a~ 97 (1263)
|+|++|++.|||||++++.+ ||++|||+||||||||||||+|||+||||.. ++.+|+++|.||||.|. .+++.+.|+
T Consensus 1 m~lk~i~l~gFKSF~~~~~i-~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~ 79 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEI-NFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAE 79 (1163)
T ss_pred CeeeEEEEECcccCCCCeee-ecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceE
Confidence 89999999999999996656 8999999999999999999999999999985 78899999999999996 567889999
Q ss_pred EEEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcC
Q 000833 98 VSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMK 177 (1263)
Q Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~ 177 (1263)
|+++| +|.++..+ .+..+++|+|+++++|+|.|||||++|+++||.++|.++||++++| +||+||+|..|+.|+
T Consensus 80 V~l~f----dN~d~~~~-~~~~ei~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~k 153 (1163)
T COG1196 80 VELTF----DNSDNTLP-LEYEEISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAK 153 (1163)
T ss_pred EEEEE----eCCCCcCC-cccceEEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcCC
Confidence 99999 44443333 3445899999999999999999999999999999999999999998 899999999999999
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHHHhHHhHHHHH
Q 000833 178 PKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWRFVCVSVLDVK 256 (1263)
Q Consensus 178 ~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 256 (1263)
|. +++.+|++++|+..|+.++.++...++.+.+.+ .....+. .+. .+ ++.|+.++
T Consensus 154 p~-------err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~---el~--------~~------l~~L~~q~ 209 (1163)
T COG1196 154 PE-------ERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLE---ELE--------KQ------LEKLERQA 209 (1163)
T ss_pred HH-------HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--------HH------HHHHHHHH
Confidence 97 589999999999999999999999999998777 4333333 333 56 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 257 NEAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQEELDND 336 (1263)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~ 336 (1263)
..+.+|..+..++..++..+....|..+..++..+...+..+...+..+...+......+..+...+.++...+..+...
T Consensus 210 ~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~ 289 (1163)
T COG1196 210 EKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888777777
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhHHHHHhhh
Q 000833 337 LRVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFENVFIADTQ 416 (1263)
Q Consensus 337 l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 416 (1263)
+..+...+..++.++..+..++..+..........+..+..++......+.........+......+...... .+...
T Consensus 290 ~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e--~~~~~ 367 (1163)
T COG1196 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE--LEEKL 367 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 7777777778888877777777777777777666666666666666666665532222333222222222111 00000
Q ss_pred hccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 417 NIITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQMDDILRRI 496 (1263)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 496 (1263)
... ..........++..+..+..+...+..++..++..++.+..++..+....+.+..++..+..+...+...+
T Consensus 368 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (1163)
T COG1196 368 SAL------LEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTEL 441 (1163)
T ss_pred HHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 000 11222333444444555555555555555555555555555555555555555555555555554444445
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCc
Q 000833 497 DTKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQGSVLKAILQAKESNQIEG 576 (1263)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 576 (1263)
......+..+...++.+...+.++...+..+...+..+...+.....++..+...... ...+..+......+ ++|
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~-~~G 516 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA----SQGVRAVLEALESG-LPG 516 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHhcc-CCC
Confidence 5555555555555555555555555555555555555555555555554444443332 12233344444334 889
Q ss_pred ceeecccccccChhHHHHHHHhcCC-CCeEEEcchHHHHHHHHHHHhcCCCceeEEecccccccccccccCCCCCCcccc
Q 000833 577 IYGRMGDLGAIDAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLFPKMKEHFSTPENVPR 655 (1263)
Q Consensus 577 ~~g~l~~l~~~~~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 655 (1263)
++|++++++.++++|..||++++|+ ++++||+++.+|..|+.+|++..+|++||+|++.+.+........ .++.+++
T Consensus 517 v~G~v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~--~~g~~~~ 594 (1163)
T COG1196 517 VYGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA--APGFLGL 594 (1163)
T ss_pred ccchHHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc--ccchhHH
Confidence 9999999999999999999999998 999999999999999999999999999999999987654211111 4667889
Q ss_pred cccccccCchhHHHHHHHHhcCeEEecChHHHHHHHhcC-CCCcceEEeeCCceeecCccccCCCCCCCCCCCCccCCCC
Q 000833 656 LFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSG-NKEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMGTSIRPT 734 (1263)
Q Consensus 656 l~d~i~~~~~~~~~~~~~~l~~~lv~~~~e~a~~~~~~~-~~~~~~~vTldG~~i~~~G~i~Gg~~~~~~~~i~~~~~~~ 734 (1263)
++|+|.|| |.|.++|.++||+|+||++++.|..+++.. ++ +++||++|+++.++|+|+||+....++ +.
T Consensus 595 a~dli~~d-~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~~--~riVTl~G~~~~~~G~~tGG~~~~~~~-~~------ 664 (1163)
T COG1196 595 ASDLIDFD-PKYEPAVRFVLGDTLVVDDLEQARRLARKLRIK--YRIVTLDGDLVEPSGSITGGSRNKRSS-LA------ 664 (1163)
T ss_pred HHHHhcCC-HHHHHHHHHHhCCeEEecCHHHHHHHHHhcCCC--ceEEecCCcEEeCCeeeecCCccccch-hh------
Confidence 99999997 699999999999999999999999999764 45 899999999999999999995433332 11
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000833 735 SVSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLKAASEPR 814 (1263)
Q Consensus 735 ~~~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 814 (1263)
...++..+..++..+...+..+...+..+...+..+...+..+...+..++.++..+...+..+......+...+..+
T Consensus 665 --~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 742 (1163)
T COG1196 665 --QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEEL 742 (1163)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122555667777777777777777777776666666666666666666666666655555555544444444322211
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 815 KDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKLKAQKLKVDKIQSDIDKSSTEINRHKVQIET 894 (1263)
Q Consensus 815 ~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~ 894 (1263)
+. ++..+...+..+..++..+...+..+......+...+... ......+...+..+..++......+..
T Consensus 743 ~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1163)
T COG1196 743 EE---ELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL--------EEKRQALQEELEELEEELEEAERRLDA 811 (1163)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2222333333333333333333333333332222222211 111122222222222222222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 895 AQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLKKTVDELRA 974 (1263)
Q Consensus 895 le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ 974 (1263)
++.++.........+. .++..+..++..+...+..+...+..+...+..+...+..+...+..+...+..++.
T Consensus 812 ~~~~~~~~~~~~~~~~-------~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~ 884 (1163)
T COG1196 812 LERELESLEQRRERLE-------QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884 (1163)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322222222222 222222222222333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCChhhHHhhhhhhhhhchhhHH-HHHHHHHHH
Q 000833 975 SEIEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQATLADQTLSDACDLK-RTLEMVALL 1053 (1263)
Q Consensus 975 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~l 1053 (1263)
....+...+..+...+..+...+..+...+..+..... .+... .......+.+... ..+. .++.++..+
T Consensus 885 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~i~~l 954 (1163)
T COG1196 885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLE----RLEVE---LPELEEELEEEYE---DTLETELEREIERL 954 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHhhhccccc---cchhHHHHHHHHHH
Confidence 33333333333333333333322222222222111000 00000 0000011111100 0111 678899999
Q ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000833 1054 EAQLKEL-NPNLDSITEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQMITLGGD 1132 (1263)
Q Consensus 1054 ~~~i~~l-~~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~ 1132 (1263)
+..+..+ ++|+.++++|.....+|.++..++.++.+.++++...+.+++..+...|+.+|..|+.+|..+|..|++||.
T Consensus 955 e~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~ 1034 (1163)
T COG1196 955 EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGT 1034 (1163)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9999999 579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHH
Q 000833 1133 AELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVK 1212 (1263)
Q Consensus 1133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~ 1212 (1263)
++|.++++.||+..||.|.+.|||+++++++.||||||+++|||++||+|.++|+||||||||||+||+.|+.+++.+|+
T Consensus 1035 a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~ 1114 (1163)
T COG1196 1035 AELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIK 1114 (1163)
T ss_pred eEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEEcchhHHHhcceeEEEEecC-CCceeEEecCCccc
Q 000833 1213 DRTKDAQFIIISLRNNMFELADRLVGIYKTD-NCTKSITINPGSFT 1257 (1263)
Q Consensus 1213 ~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~-~~s~~~~~~~~~~~ 1257 (1263)
++++++|||||||++.+|..||++|||++.. |+|+++++++..+.
T Consensus 1115 e~s~~sQFIvIThr~~~m~~ad~l~GVtm~~~GvS~vvsv~l~~~~ 1160 (1163)
T COG1196 1115 EMSKETQFIVITHRKGTMEAADRLVGVTMQEKGVSKVVSVDLEEAE 1160 (1163)
T ss_pred HhCcCCeEEEEEcChHHHHHHHHHeeeEeecCCceEEEEeeHhhhh
Confidence 9999999999999999999999999999987 89999999987654
No 3
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-106 Score=925.77 Aligned_cols=1116 Identities=23% Similarity=0.380 Sum_probs=770.5
Q ss_pred ceEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEE
Q 000833 19 RLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGV 98 (1263)
Q Consensus 19 ~m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v 98 (1263)
+|.|..|+|.|||||.|.++||||. .||+|||||||||||+||||+||||.+++.+|+..+.+||+ |. ...|.|
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIy-g~----~i~~~v 74 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIY-GK----PIRKPV 74 (1141)
T ss_pred CCceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhc-CC----ccCCch
Confidence 4789999999999999999999999 89999999999999999999999999999999999999999 42 344556
Q ss_pred EEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCC
Q 000833 99 SVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178 (1263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~ 178 (1263)
++.|.- + +|....++|.+. +|+|+|+|||..|+..+|...+..+||-+.+.+|+|+||+|..|+.++|
T Consensus 75 ~l~Y~~--~---------dg~~~~F~R~I~-~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~P 142 (1141)
T KOG0018|consen 75 TLKYEE--G---------DGETRRFTRAIN-GGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNP 142 (1141)
T ss_pred hheeec--C---------Cchhhhhhhhhc-CCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCH
Confidence 666621 1 344567889887 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHHHhHHhHHHHHH
Q 000833 179 KGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWRFVCVSVLDVKN 257 (1263)
Q Consensus 179 ~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (1263)
. ++..+||+++|+-.|+..|+........+...+ ......+.| . .+ ....+..+.
T Consensus 143 k-------Elt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I---~--------aE------kk~aK~~k~ 198 (1141)
T KOG0018|consen 143 K-------ELTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSI---A--------AE------KKEAKEGKE 198 (1141)
T ss_pred H-------HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHH---H--------HH------HHHHHhhHH
Confidence 7 589999999999999999999999888887776 555555533 2 23 455667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 258 EAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQEELDNDL 337 (1263)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l 337 (1263)
++++|..+.++....+.....+.+.+.....+....++.....++..+...+.....++.....+...+..++......+
T Consensus 199 eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i 278 (1141)
T KOG0018|consen 199 EAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKI 278 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888888888888888777777777777777777666
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhHHHHHhhhh
Q 000833 338 RVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFENVFIADTQN 417 (1263)
Q Consensus 338 ~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1263)
......+.+ ..++-.......++..++...+..+...+.........++.+..++..+......+.+++....-...+.
T Consensus 279 ~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~ 357 (1141)
T KOG0018|consen 279 SEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSE 357 (1141)
T ss_pred HHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 666666665 4455556666666666666666666666666666666666666666666666555555554400000000
Q ss_pred ccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 418 IITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQMDDILRRID 497 (1263)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 497 (1263)
++ -.+....+...++.+-. .....++.-++.....-+..++........+++++..+...+......+.
T Consensus 358 -ln----l~d~~~~ey~rlk~ea~------~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~ 426 (1141)
T KOG0018|consen 358 -LN----LKDDQVEEYERLKEEAC------KEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRN 426 (1141)
T ss_pred -CC----cchHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00011111111111100 00022233333333333333333333333444444444444444444444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCcc
Q 000833 498 TKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQGSVLKAILQAKESNQIEGI 577 (1263)
Q Consensus 498 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 577 (1263)
.+...+..+......+...+..+.........+...+..++.....++..+................+..++ ..+||+
T Consensus 427 ~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lK--r~fPgv 504 (1141)
T KOG0018|consen 427 KLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALK--RLFPGV 504 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHH--HhCCCc
Confidence 444444444444444444444444444444444455555555555555554444332221111111222221 257999
Q ss_pred eeecccccccC-hhHHHHHHHhcCC-CCeEEEcchHHHHHHHHHHHhcCCCceeEEecccccccccccccCCCCCCcccc
Q 000833 578 YGRMGDLGAID-AKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLFPKMKEHFSTPENVPR 655 (1263)
Q Consensus 578 ~g~l~~l~~~~-~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 655 (1263)
+|++.|+|.+. .+|..|+.+++|. .++|||++..+|..||.++++..+|..||+|++.+...+. ...+..++++..
T Consensus 505 ~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~--~e~lr~~~g~rl 582 (1141)
T KOG0018|consen 505 YGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPV--NEKLRELGGVRL 582 (1141)
T ss_pred cchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCcc--cccccCcCCeEE
Confidence 99999999886 8999999999999 9999999999999999999999999999999999875541 233345667889
Q ss_pred cccccccCchhHHHHHHHHhcCeEEecChHHHHHHHhcCC-CCcceEEeeCCceeecCccccCCCCCCCCCCCCccCCCC
Q 000833 656 LFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSGN-KEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMGTSIRPT 734 (1263)
Q Consensus 656 l~d~i~~~~~~~~~~~~~~l~~~lv~~~~e~a~~~~~~~~-~~~~~~vTldG~~i~~~G~i~Gg~~~~~~~~i~~~~~~~ 734 (1263)
++|+|.|+ |.+.++|.|++|+++||+++++|++++|++. + +.+||+||.+|+.+|.||||++. . .
T Consensus 583 v~Dvi~ye-~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r--~k~valdGtl~~ksGlmsGG~s~----~-------~ 648 (1141)
T KOG0018|consen 583 VIDVINYE-PEYEKAVQFACGNALVCDSVEDARDLAYGGEIR--FKVVALDGTLIHKSGLMSGGSSG----A-------K 648 (1141)
T ss_pred EEEecCCC-HHHHHHHHHHhccceecCCHHHHHHhhhccccc--ceEEEeeeeEEeccceecCCccC----C-------C
Confidence 99999986 7999999999999999999999999999763 4 78999999999999999999863 1 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000833 735 SVSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLKAASEPR 814 (1263)
Q Consensus 735 ~~~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 814 (1263)
|.+..+..|......+..+|.++.. ... +....+..+.-++..+.-.+.++..+...+...+.++.....
T Consensus 649 -wdek~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~----- 718 (1141)
T KOG0018|consen 649 -WDEKEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTES----- 718 (1141)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 8899999999999999999988877 211 566666666666666666666665555555554444444433
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh------------hhh-HHHHHHHHHHHHHHHHHH
Q 000833 815 KDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAG------------GEK-LKAQKLKVDKIQSDIDKS 881 (1263)
Q Consensus 815 ~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~------------~~~-l~~~~~~~~~l~~~~~~l 881 (1263)
.+....+++..+...++.....+++++..+..++..+..-. ... .+....+..+++.++..+
T Consensus 719 -----~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l 793 (1141)
T KOG0018|consen 719 -----EIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKL 793 (1141)
T ss_pred -----HHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666777777777777777777776664321 001 111122333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 882 STEINRHKVQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKND 961 (1263)
Q Consensus 882 ~~~l~~~~~~~~~le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 961 (1263)
..++.-... .....++..+++.+..++.+++.+...-..+...+.++ ++++. ++ ...
T Consensus 794 ~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~---------------~~~e~-k~-----k~~ 850 (1141)
T KOG0018|consen 794 ENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI---------------EELEK-KN-----KSK 850 (1141)
T ss_pred hhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH---------------HHHHH-HH-----HHH
Confidence 443332222 22222233333333333222222222222222222221 11111 00 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHhhhhhhhhhccC--ChhhHHh--hhhhhh
Q 000833 962 YEKLKKTVDELRASEIEADYKLQDLKRSYKELEMRGKGYKKRLDDL-QITLLKHLEQIQKDLV--DPEKLQA--TLADQT 1036 (1263)
Q Consensus 962 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l-~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 1036 (1263)
...+..++.+.+.....+...+..+...+..++..+..+..+...+ .... ++.+..++. .+.+... .+.-..
T Consensus 851 ~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ck---l~~I~vPl~~gs~~d~~~~ieidy~~ 927 (1141)
T KOG0018|consen 851 FEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCK---LEDIEVPLSSGSMDDIVIGIEIDYSG 927 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh---hccccccccCCCccccceeccccccc
Confidence 1222222222222222333333333333333333333322222211 1000 112222221 0001100 000000
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1037 LSDACDLKRTLEMVALLEAQLKELNPNLDSITEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAI 1116 (1263)
Q Consensus 1037 ~~~~~~~~~l~~~i~~l~~~i~~l~~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~ 1116 (1263)
+ +..+. ++..|.++...++.+.||+.|+..|..+. +....+..+...+.-..+...+..++.++...|+.+|+.|
T Consensus 928 L--~~~y~-L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~v 1002 (1141)
T KOG0018|consen 928 L--PREYK-LQQKLEEKQSVLNRIAPNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHV 1002 (1141)
T ss_pred c--cHHHH-HHHHHHHHHHHHHHhCcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12233 78899999999999999999999999877 8888888898998889999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecC
Q 000833 1117 SLKLKEMYQMITL-GGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEI 1195 (1263)
Q Consensus 1117 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~ 1195 (1263)
+.++..+|..|++ .|.++|.+.++.+||.+||.|.+.||+++++++.+||||||+++||||+||++.|.|+||+||||+
T Consensus 1003 a~~Id~IYK~Ltnt~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEi 1082 (1141)
T KOG0018|consen 1003 ADNIDRIYKELTNTEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEI 1082 (1141)
T ss_pred HHHHHHHHHHhcccccceeecCCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhH
Confidence 9999999999985 488999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec-CCCceeEEecCC
Q 000833 1196 DAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT-DNCTKSITINPG 1254 (1263)
Q Consensus 1196 d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~-~~~s~~~~~~~~ 1254 (1263)
||+||-.|+.+|+.+|+ +.+.|||+||..+.++..||.++||+.+ .++|+|+|++++
T Consensus 1083 DAALDntNi~kvasyIr--~~~~Q~IvISLK~~~y~kadaLVGvyr~~~~~S~vlt~dL~ 1140 (1141)
T KOG0018|consen 1083 DAALDNTNIGKVASYIR--SSNFQFIVISLKEEFYQKADALVGVYRDQEDCSKVLTFDLT 1140 (1141)
T ss_pred HHHhhhccHHHHHHHHh--cCCceEEEEeccHHHhhhhhceeeeccCcccccceEEeecC
Confidence 99999999999999998 7789999999999999999999999996 478999999876
No 4
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.9e-102 Score=874.14 Aligned_cols=1149 Identities=18% Similarity=0.283 Sum_probs=724.7
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|+.|.|.||+||++.+++.||+|.-|+|||.|||||||+|-||.|||..-.+++|......|+|.|++.. .-+|+|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~gLlHEGsG~~-V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKREERQGLLHEGSGAM-VMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHHHHhhhhhcCCCcc-eEEEEEE
Confidence 899999999999999999998999999999999999999999999999999888888888889999996543 6789999
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCCC
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 179 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~~ 179 (1263)
++| +|++.+++ .++.+++|+|++ .-....|++|++.|+..+|..++...|+...|||+||+||.|.+++.++..
T Consensus 80 IvF----~nsdnr~~-~~k~Ev~lrRtV-GlKKDeY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~ 153 (1200)
T KOG0964|consen 80 IVF----DNSDNRLP-RGKSEVSLRRTV-GLKKDEYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDS 153 (1200)
T ss_pred EEE----eCcccccC-CCCCeEEEEEee-cccchhhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcH
Confidence 999 66666665 467899999999 445689999999999999999999999999999999999999999887764
Q ss_pred CCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHHHhHHhHHHHHHH
Q 000833 180 GQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWRFVCVSVLDVKNE 258 (1263)
Q Consensus 180 ~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (1263)
++++++.+++|+..|..+..++.+-+++..... ....-+. .++ .. +..|+..+++
T Consensus 154 -------eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~---yie--------er------LreLEeEKee 209 (1200)
T KOG0964|consen 154 -------ERLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLK---YIE--------ER------LRELEEEKEE 209 (1200)
T ss_pred -------HHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHH---HHH--------HH------HHHHHHhHHH
Confidence 689999999999999999999999999887555 3333333 443 55 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 259 AEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQEELDNDLR 338 (1263)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~ 338 (1263)
++.|.++..+.+.++..++...+.++...+..+.......-..-......+......+..+..++.++...+..+..+..
T Consensus 210 L~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~eke 289 (1200)
T KOG0964|consen 210 LEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKE 289 (1200)
T ss_pred HHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888887777766655444333333333333333444444444433333333333333
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhH--HHHHhhh
Q 000833 339 VSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFEN--VFIADTQ 416 (1263)
Q Consensus 339 ~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 416 (1263)
.+..+....-+....++-.++.++..+..-.+.-......+..+..++.+...++..+..+...+..+-.. .++..++
T Consensus 290 q~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~ 369 (1200)
T KOG0964|consen 290 QLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLE 369 (1200)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 33332222222222233233333332222222222222222222222222222222222222222211111 0010000
Q ss_pred hccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 417 NIITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQMDDILRRI 496 (1263)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 496 (1263)
+ ...+.+.++.-...++....+-.-+.+++..+..-+.+... ..+.++..+..++..+.....++..+...+
T Consensus 370 ~-~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke-------~e~~lq~e~~~~e~~l~~~~e~i~~l~~si 441 (1200)
T KOG0964|consen 370 Q-KQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKE-------QENILQKEIEDLESELKEKLEEIKELESSI 441 (1200)
T ss_pred H-HHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0 00000000000111111111112233333333333333333 333333444444444555555555555556
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHhcCCC
Q 000833 497 DTKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQ--GSVLKAILQAKESNQI 574 (1263)
Q Consensus 497 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 574 (1263)
.+...++.++......++.++.++......+|.+...++..+..+...+......+....++ ..++..+......-.+
T Consensus 442 ~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ 521 (1200)
T KOG0964|consen 442 NETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKP 521 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 66666666666666777777777777778888888888888888888887777777655442 1223333333333347
Q ss_pred CcceeecccccccChhHHHHHHHhcCC-CCeEEEcchHHHHHHHHHHHhcCCCceeEEecccccccccccccCCCCCCcc
Q 000833 575 EGIYGRMGDLGAIDAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLFPKMKEHFSTPENV 653 (1263)
Q Consensus 575 ~g~~g~l~~l~~~~~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 653 (1263)
.|++|+|++|+.+++.|..|+++..|+ |+++||+++++|...+..+.+-++|++||+|++.+.... ...+..+.+
T Consensus 522 ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~----v~yp~~sda 597 (1200)
T KOG0964|consen 522 NGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARD----VEYPKDSDA 597 (1200)
T ss_pred cccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhh----ccCCCCCCc
Confidence 899999999999999999999999999 999999999999999999999889999999999986532 233344566
Q ss_pred cccccccccCchhHHHHHHHHhcCeEEecChHHHHHHHhcCCCCcceEEeeCCceeecCccccCCCCCCCCCCCCccCCC
Q 000833 654 PRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSGNKEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMGTSIRP 733 (1263)
Q Consensus 654 ~~l~d~i~~~~~~~~~~~~~~l~~~lv~~~~e~a~~~~~~~~~~~~~~vTldG~~i~~~G~i~Gg~~~~~~~~i~~~~~~ 733 (1263)
.|+++.|.|. |.|.+++.++||+|+||.|++.|..++.... ..|||++|+.+++.|.||||+.....+.+
T Consensus 598 iPli~kl~y~-p~fdka~k~Vfgktivcrdl~qa~~~ak~~~---ln~ITl~GDqvskkG~lTgGy~D~krsrL------ 667 (1200)
T KOG0964|consen 598 IPLISKLRYE-PQFDKALKHVFGKTIVCRDLEQALRLAKKHE---LNCITLSGDQVSKKGVLTGGYEDQKRSRL------ 667 (1200)
T ss_pred cchHHHhCcc-hhhHHHHHHHhCceEEeccHHHHHHHHHhcC---CCeEEeccceecccCCccccchhhhhhHH------
Confidence 7899999995 8999999999999999999999999987543 77999999999999999999864332221
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000833 734 TSVSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLKAASEP 813 (1263)
Q Consensus 734 ~~~~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~ 813 (1263)
.....+.....++.+++..|+.++..++...+++..+...+..++..+.....+...+..++..+..+...+...
T Consensus 668 --e~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s--- 742 (1200)
T KOG0964|consen 668 --ELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQES--- 742 (1200)
T ss_pred --HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---
Confidence 223555556666666666666666666666665555555555555555554444444444443333332222221
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 814 RKDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKAL-QLQSKVENAGGEKLKAQKLKVDKIQSDIDKSSTEINRHKVQI 892 (1263)
Q Consensus 814 ~~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~~ 892 (1263)
+.-....++.+...+..+......++..+. .+-.++..-. .+.+..+..++..+..++..+....
T Consensus 743 -------~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee-------~e~l~kLn~eI~~l~~kl~~~~~er 808 (1200)
T KOG0964|consen 743 -------LEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEE-------LERLSKLNKEINKLSVKLRALREER 808 (1200)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHH-------HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 111122223333333333333333332221 1111111111 1223333444444433333332222
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 893 ETAQKMIKKLTKGIA-ESKKEKEQLVEERVKME-----RIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLK 966 (1263)
Q Consensus 893 ~~le~~l~~~~~~l~-~l~~~~~~~~~el~~l~-----~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~ 966 (1263)
-.++.....+...+. .+......+..++..+. ..+......+.....+++....++..+...+......+.++.
T Consensus 809 ~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~ 888 (1200)
T KOG0964|consen 809 IDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIK 888 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 222222222222211 12222222222222211 111122222222222222222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCChhhHHhhhhhhhhhchhhHHHH
Q 000833 967 KTVDELRASEIEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQATLADQTLSDACDLKRT 1046 (1263)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1046 (1263)
..+..+.......... ....+.++.+..+-.-+-...+++. +.+..--.-+...+.++ ......++
T Consensus 889 ~~lE~~~~lek~~~~~-~~~dKe~Ek~~~rk~~Ll~KreE~~-------ekIr~lG~Lp~daf~ky------~~~~~~el 954 (1200)
T KOG0964|consen 889 KELEKAKNLEKEKKDN-INFDKELEKLVRRKHMLLKKREECC-------EKIRELGVLPEDAFEKY------QDKKSKEL 954 (1200)
T ss_pred HHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCCCchHHHHHh------ccCCHHHH
Confidence 2222111111110000 0001111111110000000111110 11100000011111111 11346788
Q ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1047 LEMVALLEAQLKEL-NPNLDSITEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQ 1125 (1263)
Q Consensus 1047 ~~~i~~l~~~i~~l-~~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ 1125 (1263)
..++..+...++.+ +||-.|+++|..-.+.-+.+..++.++....+.+...+..|+....+....+|.+|..+|.++|.
T Consensus 955 ~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~ 1034 (1200)
T KOG0964|consen 955 MKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFS 1034 (1200)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999 68999999999877777888888888888889999999999999999999999999999999999
Q ss_pred HhcCCccEEEEecCCC--------C-ccc-------------ccceeeecCCCcc--ccccccCChhHHHHHHHHHHHHh
Q 000833 1126 MITLGGDAELELVDSL--------D-PFS-------------EGVVFSVRPPKKS--WKNIANLSGGEKTLSSLALVFAL 1181 (1263)
Q Consensus 1126 ~l~~~~~~~~~~~~~~--------~-~~~-------------~~~~~~~~~~~~~--~~~~~~lSGGek~~~~la~~~a~ 1181 (1263)
.|.+||.+.+.+.... + ... .||.+.|+..++. .+.+.+||||||++||||++||+
T Consensus 1035 ~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFnskq~E~~~m~QLSGGQKsvvALaLIFaI 1114 (1200)
T KOG0964|consen 1035 RLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFNSKQGETLEMEQLSGGQKSVVALALIFAI 1114 (1200)
T ss_pred HhCCCCceeehhhccccccccccccccccccccccccchhhccceeEEEEeecCccHHHHHHHhcCchHHHHHHHHHHHH
Confidence 9999999966553110 1 111 4688888876544 46788999999999999999999
Q ss_pred ccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecCCCceeEEecCC
Q 000833 1182 HHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPG 1254 (1263)
Q Consensus 1182 ~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~~~s~~~~~~~~ 1254 (1263)
++|.|+|||+|||+||+||+.++..|++||+++++++|||+.|++|++...||..|||...+-+|++.+|+.+
T Consensus 1115 QrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~vAdKfygV~f~nKvS~V~~It~e 1187 (1200)
T KOG0964|consen 1115 QRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSVADKFYGVKFENKVSTVDEITRE 1187 (1200)
T ss_pred HhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHHHHhhhceeeccccccceeeeHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887644
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.1e-100 Score=862.86 Aligned_cols=1136 Identities=20% Similarity=0.298 Sum_probs=716.8
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCc-chhhhhhhcccccccccccCCCCCceEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGK-RAKQMRLNKVSELIHNSTNYQNLDSAGV 98 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~-~~~~~r~~~~~~~i~~g~~~~~~~~a~v 98 (1263)
|+|++|.|.|||||+.+|+|..|+|.||+|+|-||||||||||+||||||. +.++.|+.++.+||+.+ +..+.+.|+|
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~-GQAGiTkAsV 79 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKN-GQAGITKASV 79 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhc-CcccceeEEE
Confidence 899999999999999999988999999999999999999999999999997 56778999999999986 3455899999
Q ss_pred EEEEeecc-ccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcC
Q 000833 99 SVHFQEIV-DLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMK 177 (1263)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~ 177 (1263)
+++|.|.. ..++.+|. ..++|+|+|.+..+|.+.|+|||+.++...++++|.+.|+.++||+|+|.||.|+.+++|+
T Consensus 80 sVvFdNtdk~~SP~G~E--~h~EIsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMK 157 (1174)
T KOG0933|consen 80 SVVFDNTDKARSPLGYE--HHDEISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMK 157 (1174)
T ss_pred EEEecCCCcccCCCCcc--cCCeeEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCC
Confidence 99995431 01123333 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHHHhHHhHHHHH
Q 000833 178 PKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWRFVCVSVLDVK 256 (1263)
Q Consensus 178 ~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 256 (1263)
|. +++.++|++||+..|..+.+.+.+-+++=...+ +...-++ .++.-+ +..|+..+
T Consensus 158 p~-------EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~--------------eeI~P~--l~KLR~Er 214 (1174)
T KOG0933|consen 158 PS-------EILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLR--------------EEILPR--LEKLREER 214 (1174)
T ss_pred cH-------HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhccHH--HHHHHHHH
Confidence 96 699999999999999999888887666544433 2211111 111000 34455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000833 257 NEAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQ-EELDN 335 (1263)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~l~~ 335 (1263)
...-+|......+..+......++|..+..........+......+..+.+.......+++.++.++.++.... .....
T Consensus 215 s~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~ 294 (1174)
T KOG0933|consen 215 SQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGG 294 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 66666666667777777777777776666666666666666666666666666666777777766666665433 23334
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhH--HHHH
Q 000833 336 DLRVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFEN--VFIA 413 (1263)
Q Consensus 336 ~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~ 413 (1263)
.+..+..++..+...+.+....+......+......++.+.+.+.+....+..-...+.........+.+.... ..++
T Consensus 295 ~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e 374 (1174)
T KOG0933|consen 295 EVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLE 374 (1174)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666655555555444444443332 1111
Q ss_pred hhhhccccchhhhhhhhHhHHHHHHHHHHHHHh-------hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 414 DTQNIITFPFMNMINLCVETERYRSELATVRAE-------LEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQ 486 (1263)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 486 (1263)
. .+..+..+... -..+..++......+..+...++...-.++.++.++...+
T Consensus 375 ~---------------------~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e 433 (1174)
T KOG0933|consen 375 K---------------------AEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLRE 433 (1174)
T ss_pred H---------------------HHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 01111111111 1223333444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH---HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 000833 487 RQMDDILRRIDTKTTAIRNMQGDLEKNKLEAMEAHNVEQ---ECFKEQETLIPLEQAARQKVAELKSVMDSEKSQGSVLK 563 (1263)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 563 (1263)
.+.....++.......+..++..++.++.++..+-.... .+..+...+-.....+...+..+...+..+.-
T Consensus 434 ~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f------ 507 (1174)
T KOG0933|consen 434 GELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEF------ 507 (1174)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc------
Confidence 444444444444444455555555555555554433321 22222222222222222233333322221110
Q ss_pred HHHHHHhcCC-----CCcceeeccccccc-ChhHHHHHHHhcCC-CCeEEEcchHHHHHHHHHHHhcCCCceeEEecccc
Q 000833 564 AILQAKESNQ-----IEGIYGRMGDLGAI-DAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVATFMILEKQ 636 (1263)
Q Consensus 564 ~l~~~~~~~~-----~~g~~g~l~~l~~~-~~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~ 636 (1263)
.+... ...+.|.++.|+.+ +..|..|++.++|+ |.++||+++.++..+++- .....|+|+||++.+
T Consensus 508 -----~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~--g~l~rRvTiIPLnKI 580 (1174)
T KOG0933|consen 508 -----TYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQR--GNLRRRVTIIPLNKI 580 (1174)
T ss_pred -----ccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhc--ccccceeEEEechhh
Confidence 11111 12378999999987 46799999999999 999999999999876641 111248999999998
Q ss_pred cccccccc----cCCCCCCcccccccccccCchhHHHHHHHHhcCeEEecChHHHHHHHhcCC-CCcceEEeeCCceeec
Q 000833 637 VDLFPKMK----EHFSTPENVPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSGN-KEFRRVVTLDGALFEK 711 (1263)
Q Consensus 637 ~~~~~~~~----~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~l~~~lv~~~~e~a~~~~~~~~-~~~~~~vTldG~~i~~ 711 (1263)
..+.-.+. ...-++.++..++++|.|+ +.+.+++.|+||+++||++++.|..++|.+. + ++.||++|++|+|
T Consensus 581 ~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd-~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~--~rsVTl~GDV~dP 657 (1174)
T KOG0933|consen 581 QSFVLSPNVLQAAKNVGNDNVELALSLIGYD-DELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIR--TRSVTLEGDVYDP 657 (1174)
T ss_pred hhccCCHhHHHHHHHhcCchHHHHHHHhcCC-HHHHHHHHHHhCceEEecCHHHHHHhhcccccc--cceeeecCceeCC
Confidence 75531100 0012355678899999997 5999999999999999999999999999753 3 5669999999999
Q ss_pred CccccCCCCCCCCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 712 SGTMSGGGSKPRGGKMGTSIRPTSVSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIE 791 (1263)
Q Consensus 712 ~G~i~Gg~~~~~~~~i~~~~~~~~~~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~ 791 (1263)
+|++|||+.++.++.+. . -..+.+++.++...+.++..++.++..++. .....+.+..++.....++.
T Consensus 658 ~GtlTGGs~~~~a~~L~-~-------l~~l~~~~~~~~~~q~el~~le~eL~~le~----~~~kf~~l~~ql~l~~~~l~ 725 (1174)
T KOG0933|consen 658 SGTLTGGSRSKGADLLR-Q-------LQKLKQAQKELRAIQKELEALERELKSLEA----QSQKFRDLKQQLELKLHELA 725 (1174)
T ss_pred CCcccCCCCCCcccHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 99999999765444321 1 134444444444444444444444433222 22222333333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000833 792 SLKSQHSYLEKQLDSLKAASEPRKDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKLKAQKLKV 871 (1263)
Q Consensus 792 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 871 (1263)
.+...+...+ .......+..+...+...+.+|.+....+......+..++..+.+..... ...+
T Consensus 726 l~~~r~~~~e------------~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r----e~rl 789 (1174)
T KOG0933|consen 726 LLEKRLEQNE------------FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR----ERRL 789 (1174)
T ss_pred HHHHHHhcCh------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----HhHH
Confidence 2222221111 01111244455555555555565555555555555555555554433111 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000833 872 DKIQSDIDKSSTEINRHKVQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQH 951 (1263)
Q Consensus 872 ~~l~~~~~~l~~~l~~~~~~~~~le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~ 951 (1263)
.++...+..+...+.........-++....+..+.+.+..++......+..+...+..+..++..+...+..........
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 33333333333333333333333333333333333333333333333333333334333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCChhhHHhh
Q 000833 952 RDVLDKAKNDYEKLKKTVDELRASEIEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQAT 1031 (1263)
Q Consensus 952 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1263)
..++....+.+......+..+.........+.....-.++.+...+..+..........+... ..-..++.+....+..
T Consensus 870 ~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l-~~k~~wi~~ek~~fgk 948 (1174)
T KOG0933|consen 870 QAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL-LKKHEWIGDEKRLFGK 948 (1174)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH-HHhccchhHHHHhhcC
Confidence 333333333222222222222222222222222222222222222222222111111111000 0111111111111111
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1032 LADQTLSDACDLKRTLEMVALLEAQLKEL--NPNLDSITEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEF 1109 (1263)
Q Consensus 1032 ~~~~~~~~~~~~~~l~~~i~~l~~~i~~l--~~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f 1109 (1263)
-........+++....+++..|+.....+ .+|+.++.-+......+..+....+.+......+.+.|..++....+..
T Consensus 949 ~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L 1028 (1174)
T KOG0933|consen 949 KGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREEL 1028 (1174)
T ss_pred CCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 00001112245667788899999888888 5799999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCe
Q 000833 1110 MAGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPL 1189 (1263)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~ 1189 (1263)
..++..|+..|..+|..|.||..+.|.+..+ ..+..|+.+.|..++-+..+++.|||||||+|||+|+||+..++|+|+
T Consensus 1029 ~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg-~~~~dGLEvkV~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPl 1107 (1174)
T KOG0933|consen 1029 NKAWEKVNKDFGSIFSTLLPGAMAKLEPPEG-KTVLDGLEVKVKFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPL 1107 (1174)
T ss_pred HHHHHHHhhhHHHHHHHhCCCccccccCCCC-CccccceEEEEEeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCce
Confidence 9999999999999999999999999887543 447789999999887777789999999999999999999999999999
Q ss_pred EEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecCCCcee
Q 000833 1190 YVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKS 1248 (1263)
Q Consensus 1190 ~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~~~s~~ 1248 (1263)
|||||+||+||-.++..|+.||+....++||||||....||..||++|.+...+|+|++
T Consensus 1108 YILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeGMF~NANvLFrtrF~DG~Stv 1166 (1174)
T KOG0933|consen 1108 YILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEGMFNNANVLFRTRFVDGVSTV 1166 (1174)
T ss_pred eehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhhccccchhhheeeeecCceee
Confidence 99999999999999999999999999999999999999999999999999999998754
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=8.2e-98 Score=1003.98 Aligned_cols=1150 Identities=24% Similarity=0.400 Sum_probs=711.6
Q ss_pred EEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcc-hhhhhhhcccccccccccCCCCCceEEE
Q 000833 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 21 ~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~-~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
+|++|.|.||+||.+.+.| +|++|||+|+||||||||||||||+||||+. +..+|+..+.++|+.|...++.+.|+|.
T Consensus 1 ~i~~l~l~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~ 79 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVI-PFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVT 79 (1164)
T ss_pred CeeEEEEeCeeeECCeeEE-eecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEE
Confidence 5899999999999986666 8999999999999999999999999999985 4557999999999986555567899999
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeec--CCC-ceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhc
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFR--DNS-SKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLM 176 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~--~~~-~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~ 176 (1263)
++|. ++++.++ +++.|.|+++. +|. +.|+|||.+|+.+++..++..+|+++++++ +|.||+++.|+.+
T Consensus 80 ~~f~----~~~~~~~----~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~~-~~~qg~~~~~~~~ 150 (1164)
T TIGR02169 80 VTFK----NDDGKFP----DELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEGYN-VVLQGDVTDFISM 150 (1164)
T ss_pred EEEE----cCCCCCC----CcEEEEEEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcCcce-EEecchHHHHHCC
Confidence 9994 2222221 45777776554 566 789999999999999999999999999865 6889999999999
Q ss_pred CCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHHHhHHhHHHH
Q 000833 177 KPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWRFVCVSVLDV 255 (1263)
Q Consensus 177 ~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (1263)
+|. +++.+|++++|+..|..++..+...+.++.+.+ +....+. .+. .+ ...++..
T Consensus 151 ~~~-------~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~---~L~--------~q------~~~l~~~ 206 (1164)
T TIGR02169 151 SPV-------ERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIID---EKR--------QQ------LERLRRE 206 (1164)
T ss_pred CHH-------HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--------HH------HHHHHHH
Confidence 997 479999999999999999999999999998766 4444433 222 22 3344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000833 256 KNEAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQEELD- 334 (1263)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~- 334 (1263)
...+++|..+...+...........+..+...+..+...+..+...+..+...+..+..++..+...+..+...+..+.
T Consensus 207 ~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1164)
T TIGR02169 207 REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444444444444433333333333333333333333344444444433333333333333333333333333332211
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhH--HHH
Q 000833 335 NDLRVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFEN--VFI 412 (1263)
Q Consensus 335 ~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~ 412 (1263)
..+..+..++..+...+..+...+..+...+..+...+..+...+..+..++..+..++..+...+..+...+.. ..+
T Consensus 287 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (1164)
T TIGR02169 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366 (1164)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223333333333333333333333333333333333333333333333333333333333333322222222 000
Q ss_pred HhhhhccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 413 ADTQNIITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQMDDI 492 (1263)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 492 (1263)
..... . ..........+......+..++..+...+..+...+..+..++..+...+..+...+..+..++..+
T Consensus 367 ~~~~~-~------l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l 439 (1164)
T TIGR02169 367 EDLRA-E------LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439 (1164)
T ss_pred HHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 1111112222222223333333333333333443443344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHH
Q 000833 493 LRRIDTKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQ---GSVLKAILQAK 569 (1263)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~ 569 (1263)
...+......+..+..++..+...+..+...+..+...+..+...+..+..++..+......+.+. ...++.++.
T Consensus 440 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~-- 517 (1164)
T TIGR02169 440 EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK-- 517 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHh--
Confidence 444444444444444444444444444444444445555555555555555554444443332221 122333321
Q ss_pred hcCCCCcceeecccccccChhHHHHHHHhcCC-CCeEEEcchHHHHHHHHHHHhcCCCceeEEecccccccccccccCCC
Q 000833 570 ESNQIEGIYGRMGDLGAIDAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLFPKMKEHFS 648 (1263)
Q Consensus 570 ~~~~~~g~~g~l~~l~~~~~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~~~~~~~~~ 648 (1263)
..++|++|+++++|.++++|..||++++|+ |+++||+++.+|..||+++++.++|++||+|++.+.+.... .....
T Consensus 518 --~~~~g~~g~l~dli~v~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~-~~~~~ 594 (1164)
T TIGR02169 518 --ASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRD-LSILS 594 (1164)
T ss_pred --cCCCCceecHHHhcCcCHHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCC-ccccc
Confidence 236799999999999999999999999999 99999999999999999999999999999999877532100 11111
Q ss_pred CCCcccccccccccCchhHHHHHHHHhcCeEEecChHHHHHHHhcCCCCcceEEeeCCceeecCccccCCCCCCCCCCCC
Q 000833 649 TPENVPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSGNKEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMG 728 (1263)
Q Consensus 649 ~~~~~~~l~d~i~~~~~~~~~~~~~~l~~~lv~~~~e~a~~~~~~~~~~~~~~vTldG~~i~~~G~i~Gg~~~~~~~~i~ 728 (1263)
+++.+++++|+|.|+ +.+.+++.++||+++||++++.|..++. + ++|||+||++|+++|+|+||+....+|.+.
T Consensus 595 ~~~~~~~~~~~i~~~-~~~~~~~~~~lg~~~v~~~l~~a~~~~~---~--~~~vTldG~~~~~~G~~tgG~~~~~~~~~~ 668 (1164)
T TIGR02169 595 EDGVIGFAVDLVEFD-PKYEPAFKYVFGDTLVVEDIEAARRLMG---K--YRMVTLEGELFEKSGAMTGGSRAPRGGILF 668 (1164)
T ss_pred CCCchHHHHHHccCc-HHHHHHHHHHCCCeEEEcCHHHHHHHhc---C--CcEEEeCceeEcCCcCccCCCCCCCCCccc
Confidence 234566788999986 6899999999999999999999999873 3 789999999999999999997422221110
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 729 TSIRPTSVSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLK 808 (1263)
Q Consensus 729 ~~~~~~~~~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~ 808 (1263)
..+...++..+..++..+...+..+...+..+..++..+...+..+...+..++.++..++..+..+...+..+.
T Consensus 669 -----~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~ 743 (1164)
T TIGR02169 669 -----SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743 (1164)
T ss_pred -----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012256777777777777777777777777777777666666666666666666665555555555555444443
Q ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 809 AASEPRKDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKLKAQKLKVDKIQSDIDKSSTEINRH 888 (1263)
Q Consensus 809 ~~~~~~~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~ 888 (1263)
..+..+. ..+..+...+..+...+..+...+..+...+..+...+... .+......+..+..++..+..++..+
T Consensus 744 ~~~~~~~---~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~---~~~~~~~~l~~l~~~~~~l~~~~~~l 817 (1164)
T TIGR02169 744 EDLSSLE---QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS---RIPEIQAELSKLEEEVSRIEARLREI 817 (1164)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221111 12333333333334444433333333333333332221100 11111222333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 889 KVQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLKKT 968 (1263)
Q Consensus 889 ~~~~~~le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~ 968 (1263)
...+..++..+..+...+..+. .++..+..++..+...+..+...+..+...+..+...+..+...+..+...
T Consensus 818 ~~~~~~l~~~~~~l~~e~~~l~-------~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 890 (1164)
T TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQ-------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333 333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCChhhHHhhhhhhhhhchhhHHHHHH
Q 000833 969 VDELRASEIEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQATLADQTLSDACDLKRTLE 1048 (1263)
Q Consensus 969 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1048 (1263)
+..+......+...+..+...+..+...+..+...+..+...... +... ... ...+.. ...++..+..
T Consensus 891 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~---~~~-~~~~~~----~~~~~~~l~~ 958 (1164)
T TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE----IEDP---KGE-DEEIPE----EELSLEDVQA 958 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhh---hhh-hhhccc----ccCCHHHHHH
Confidence 333333333333333333333333333333333333322211110 0000 000 000000 0124567888
Q ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000833 1049 MVALLEAQLKELN-PNLDSITEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQMI 1127 (1263)
Q Consensus 1049 ~i~~l~~~i~~l~-~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~l 1127 (1263)
++..++..+..++ +|+.++.+|.....+|.++..++.++...++.+...+..++..+...|+.+|..|+..|..+|..|
T Consensus 959 ~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHH
Q 000833 1128 TLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIV 1207 (1263)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~ 1207 (1263)
+ ||.+.|.+.++.+|+..|+.+.|.||++...++..|||||+++++||++||++.+.|||||||||||+|||+.++.++
T Consensus 1039 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~ 1117 (1164)
T TIGR02169 1039 S-GGTGELILENPDDPFAGGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERV 1117 (1164)
T ss_pred h-CCeEEEEecCCCCcccCCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHH
Confidence 9 999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec-CCCceeEEecC
Q 000833 1208 GHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT-DNCTKSITINP 1253 (1263)
Q Consensus 1208 ~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~-~~~s~~~~~~~ 1253 (1263)
+.+|..++.++|||||||++.++.+||++|||++. +|+|++++|++
T Consensus 1118 ~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~~~~g~S~~~~~~~ 1164 (1164)
T TIGR02169 1118 AKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTMRRNGESQVFGLKL 1164 (1164)
T ss_pred HHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEEecCCeeEEEeccC
Confidence 99999988889999999999999999999999997 89999999864
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=2.9e-83 Score=867.03 Aligned_cols=1150 Identities=23% Similarity=0.367 Sum_probs=694.4
Q ss_pred EEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcc-hhhhhhhcccccccccc-cCCCCCceEE
Q 000833 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLNKVSELIHNST-NYQNLDSAGV 98 (1263)
Q Consensus 21 ~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~-~~~~r~~~~~~~i~~g~-~~~~~~~a~v 98 (1263)
+|++|.|.|||||.+.+.| +|++|||+|||||||||||||+||+||||.+ +..+|+.++.++|+.|. ..++...|+|
T Consensus 1 ~i~~l~~~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v 79 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTI-NFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEV 79 (1179)
T ss_pred CeeEEEEeCccccCCCeeE-EecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEE
Confidence 4899999999999987666 8999999999999999999999999999985 45689999999999985 3455678999
Q ss_pred EEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCC
Q 000833 99 SVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178 (1263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~ 178 (1263)
+++|.+ +++.++.+++.+++|.|++..+|.+.|++||.+++..++..++..+||+++++ ++++||+|..|+.|+|
T Consensus 80 ~~~~~~----~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~~~ 154 (1179)
T TIGR02168 80 ELVFDN----SDGLLPGADYSEISITRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEAKP 154 (1179)
T ss_pred EEEEec----CCCCCCCCCCCeEEEEEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcccc-hheecccHHHHHcCCH
Confidence 999943 22222212346799999998889999999999999999999999999999885 6889999999999999
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHHHhHHhHHHHHH
Q 000833 179 KGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWRFVCVSVLDVKN 257 (1263)
Q Consensus 179 ~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (1263)
. +++.+|++++|++.|+..+..+..+|.++.+.+ +.. .+ +..|..+..
T Consensus 155 ~-------~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~------------------~q------l~~L~~q~~ 203 (1179)
T TIGR02168 155 E-------ERRAIFEEAAGISKYKERRKETERKLERTRENLDRLE------------------DI------LNELERQLK 203 (1179)
T ss_pred H-------HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH------HHHHHHHHH
Confidence 6 589999999999999999999999999998655 322 23 556778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 258 EAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQEELDNDL 337 (1263)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l 337 (1263)
.+++|..+..++..+...+....+..+...+..+...+..+...+......+..+..++..+...+..+...+..+...+
T Consensus 204 ~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 283 (1179)
T TIGR02168 204 SLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899888888888888777777777777777777777777777777777777777777666666666666666666666
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhH--HHHHhh
Q 000833 338 RVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFEN--VFIADT 415 (1263)
Q Consensus 338 ~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~ 415 (1263)
..+...+..+...+..+..++..+...+..+...+..+..++..+...+..+...+..+..++..+...+.. ..+...
T Consensus 284 ~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 363 (1179)
T TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555555555555555555555555555555555555555544444444444444333332 111110
Q ss_pred hhccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 416 QNIITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQMDDILRR 495 (1263)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 495 (1263)
.. . ...+......+...+..+..++..+...+..+...+..+..++..+...+..+..++..+..++. ...
T Consensus 364 ~~-~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~--~~~ 434 (1179)
T TIGR02168 364 EA-E------LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAE 434 (1179)
T ss_pred HH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHH
Confidence 00 0 00111111122222222222222222222222222222222222222222222222222222221 112
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh-------hhhhHHHHHHHHH
Q 000833 496 IDTKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSE-------KSQGSVLKAILQA 568 (1263)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~l~~~ 568 (1263)
+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+......+ .+....+..+...
T Consensus 435 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v 514 (1179)
T TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhc
Confidence 222233333333333333333333332333333333333222222222222211111100 0000011111110
Q ss_pred HhcCCCCcceeecccccccChhHHHHHHHhcCC-CCeEEEcchHHHHHHHHHHHhcCCCceeEEecccccccccc--ccc
Q 000833 569 KESNQIEGIYGRMGDLGAIDAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLFPK--MKE 645 (1263)
Q Consensus 569 ~~~~~~~g~~g~l~~l~~~~~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~~~--~~~ 645 (1263)
...++|++|.+.+++.+++.|..|+..++|+ +.++||++.++|..|+.+++....|+++|+|++.+...... ...
T Consensus 515 --~~~~~~~~g~~~~li~~~~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~ 592 (1179)
T TIGR02168 515 --QSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDRE 592 (1179)
T ss_pred --ccccCCCccchhceeeeChhHHHHHHHHHHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchh
Confidence 1123678899999999999999999999988 88899999999999999999888999999999876421100 000
Q ss_pred CCC-CCCcccccccccccCchhHHHHHHHHhcCeEEecChHHHHHHHhcCC-CCcceEEeeCCceeecCccccCCCCCCC
Q 000833 646 HFS-TPENVPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSGN-KEFRRVVTLDGALFEKSGTMSGGGSKPR 723 (1263)
Q Consensus 646 ~~~-~~~~~~~l~d~i~~~~~~~~~~~~~~l~~~lv~~~~e~a~~~~~~~~-~~~~~~vTldG~~i~~~G~i~Gg~~~~~ 723 (1263)
... ..+.+..+.|++.|+ +.+.+++.+.++.+.+|.+++.|..+++... . ..+||++|..+..+|.++||.+.
T Consensus 593 ~~~~~~~~~~~~~dl~~~~-~~~~~~~~~~~~~~~ivt~l~~a~~~~~~~~~~--g~~v~~~G~~~~~gg~~~~~~~~-- 667 (1179)
T TIGR02168 593 ILKNIEGFLGVAKDLVKFD-PKLRKALSYLLGGVLVVDDLDNALELAKKLRPG--YRIVTLDGDLVRPGGVITGGSAK-- 667 (1179)
T ss_pred hccccCchhHHHHHHhccc-HhHHHHHHHHhCCceEeCCHHHHHHHHHHcCCC--ceEEecCCEEEcCCceEecCccc--
Confidence 011 123455667777775 5677777777888889999999999886432 3 57889888877777776655421
Q ss_pred CCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 724 GGKMGTSIRPTSVSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQ 803 (1263)
Q Consensus 724 ~~~i~~~~~~~~~~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~ 803 (1263)
. .+.+.....++..++..+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...
T Consensus 668 --~----~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1179)
T TIGR02168 668 --T----NSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741 (1179)
T ss_pred --c----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0112234556666666666666666666666666666666666665555555555555555555555555544
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000833 804 LDSLKAASEPRKDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKLKAQKLKVDKIQSDIDKSST 883 (1263)
Q Consensus 804 l~~l~~~~~~~~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~ 883 (1263)
+..+..+ +..+...+..+..++..+...+..+...+..+...+.... ..+......+..+...+..+..
T Consensus 742 ~~~l~~e----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 810 (1179)
T TIGR02168 742 VEQLEER----------IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE-AQIEQLKEELKALREALDELRA 810 (1179)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 2222233333333333333333333333333332222111 1111222223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 884 EINRHKVQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYE 963 (1263)
Q Consensus 884 ~l~~~~~~~~~le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 963 (1263)
++..+...+..+...+..+...+..+..++..+..++..+...+..+...+..+...+..+...+..+...+..+...+.
T Consensus 811 ~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 890 (1179)
T TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCChhhHHhhhhhhhhhchhhH
Q 000833 964 KLKKTVDELRASEIEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQATLADQTLSDACDL 1043 (1263)
Q Consensus 964 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1263)
.+...+..+......+...+..+...+..+...+..+...+..+...+......+... . ......... ..
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~-------~-~~~~~~~~~--~~ 960 (1179)
T TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE-------Y-SLTLEEAEA--LE 960 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccCHHHHHh--hc
Confidence 3333333333333333333333333333333333333333333322221110000000 0 000000000 00
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 000833 1044 KRTLEMVALLEAQLKELNPNLDSITEYRRK----VAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEF---MAGFNAI 1116 (1263)
Q Consensus 1044 ~~l~~~i~~l~~~i~~l~~nl~~~~e~~~~----~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f---~~~~~~~ 1116 (1263)
..+..++..++..+..+++ ++++|... .++|.++..++.++..+++++...+.+++......| +.+|..|
T Consensus 961 ~~~~~~~~~l~~~i~~lg~---aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v 1037 (1179)
T TIGR02168 961 NKIEDDEEEARRRLKRLEN---KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037 (1179)
T ss_pred cccccCHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0023345556666666655 66666533 377888888888888888888888888888888888 7777777
Q ss_pred HHHHHHHHHHh----cCCccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEe
Q 000833 1117 SLKLKEMYQMI----TLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVM 1192 (1263)
Q Consensus 1117 ~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~il 1192 (1263)
+.+|..+|..+ ++||.+.+.+.++.+|+..|+.+.+.||++.+.++..|||||+++++||++||++.+.||||+||
T Consensus 1038 ~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~l 1117 (1179)
T TIGR02168 1038 FDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAGIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCIL 1117 (1179)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccCceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEe
Confidence 76666666655 46999999998888899999999999999988899999999999999999999988899999999
Q ss_pred ecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec-CCCceeEEecC
Q 000833 1193 DEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT-DNCTKSITINP 1253 (1263)
Q Consensus 1193 DE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~-~~~s~~~~~~~ 1253 (1263)
||||+|||+.++..|+.+|..+.++.|||||||++.++.+||+++||++. +|+|++|++++
T Consensus 1118 DE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 1179 (1179)
T TIGR02168 1118 DEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVTMQEKGVSKIVSVDL 1179 (1179)
T ss_pred cCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeeeeccCCceeEeeccC
Confidence 99999999999999999999887789999999999999999999999998 59999999975
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-69 Score=629.86 Aligned_cols=662 Identities=18% Similarity=0.246 Sum_probs=385.2
Q ss_pred CCCceEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhh-hhhhcccccccccccCCCCC
Q 000833 16 KWPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ-MRLNKVSELIHNSTNYQNLD 94 (1263)
Q Consensus 16 ~~~~m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~-~r~~~~~~~i~~g~~~~~~~ 94 (1263)
-+..|+|.+|+|.|||||++..+ .|.+.+|+||||||||||+||.||+.+||++++. .||.++++||+.| ++
T Consensus 36 ~~~sG~I~sI~L~NFMCHsnL~I--eFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G-----~~ 108 (1074)
T KOG0250|consen 36 RAESGKIESIHLTNFMCHSNLLI--EFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDG-----CS 108 (1074)
T ss_pred hhhcceEEEEEEeeeccccccee--ccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCC-----Cc
Confidence 34459999999999999999966 7888999999999999999999999999999876 6999999999999 89
Q ss_pred ceEEEEEEeeccccCCCccc-ccCCceEEEEEEeecCCCceEEE---cCcccC--HHHHHHHHHhCCCCCCCCccccchh
Q 000833 95 SAGVSVHFQEIVDLDDGTYE-AIQGSDFVISRVAFRDNSSKYYI---NDRPSN--FTEVTKKLKGKGVDLDNNRFLILQG 168 (1263)
Q Consensus 95 ~a~v~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~~~~~~~~y~i---n~~~~~--~~~~~~~~~~~~i~~~~~~~~i~qg 168 (1263)
+|.|++++.|- +.++|. .++|+.|+|.|+|.++|++.|.. +|++|+ .+|+..++.+|||+++||+|+..|.
T Consensus 109 ~A~IsItL~N~---G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD 185 (1074)
T KOG0250|consen 109 SAKISITLSNS---GLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQD 185 (1074)
T ss_pred ceEEEEEEecC---CcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHH
Confidence 99999999653 234555 46899999999998888666666 578776 4799999999999999999999999
Q ss_pred hHHHHHh-cCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHH
Q 000833 169 EVEQISL-MKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWR 246 (1263)
Q Consensus 169 ~v~~~~~-~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 246 (1263)
...+|+. ++|.+ ..++|=...-.......|......+......+ ...+.+. .+. ++
T Consensus 186 ~aR~FL~~~~p~d-------kYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~---~l~--------k~---- 243 (1074)
T KOG0250|consen 186 AARSFLANSNPKD-------KYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIK---NLK--------KK---- 243 (1074)
T ss_pred HHHHHHhcCChHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHH--------HH----
Confidence 9999985 56653 45666555554444455555555555555544 4444444 222 22
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 247 FVCVSVLDVKNEAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKY 326 (1263)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 326 (1263)
+..++..-...+....+...+..+..... |..+-....++..+...+...+.....+...++.......++
T Consensus 244 --i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~-------W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~ 314 (1074)
T KOG0250|consen 244 --IKEEEEKLDNLEQLEDLKENLEQLKAKMA-------WAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEA 314 (1074)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222333333333333 333344455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHh
Q 000833 327 MRRQEELDNDLRVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKL 406 (1263)
Q Consensus 327 ~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 406 (1263)
...+...+..+..+...-.....++..+...+.........++.++. .....+...+.....++..+..+++.
T Consensus 315 r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~-------~~~n~i~~~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 315 RQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIR-------EIENSIRKLKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444333333333333333333333333333322 22222222222222222222222221
Q ss_pred hhHHHHHhhhhccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 407 FENVFIADTQNIITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQ 486 (1263)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 486 (1263)
.. ..+..++....+++..+..+++.++..+..+. .++..+
T Consensus 388 ~~--------------------------------~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~-------~e~~~~- 427 (1074)
T KOG0250|consen 388 TN--------------------------------NELGSELEERENKLEQLKKEVEKLEEQINSLR-------EELNEV- 427 (1074)
T ss_pred HH--------------------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-
Confidence 10 00111111111222222222222222211111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 000833 487 RQMDDILRRIDTKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQGSVLKAIL 566 (1263)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 566 (1263)
...+..-+.+...++..+..+...++.....+..+..- -...+.. ++..+..++
T Consensus 428 -------------~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~----------k~dkvs~---FG~~m~~lL 481 (1074)
T KOG0250|consen 428 -------------KEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT----------KTDKVSA---FGPNMPQLL 481 (1074)
T ss_pred -------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccchhhh---cchhhHHHH
Confidence 11111112112222222221211111111111111110 0111122 222233333
Q ss_pred HHHhcC--C-CCcceeeccccccc-ChhHHHHHHHhcCC-CCeEEEcchHHHHHHHHHHHhcCCC--ceeEEeccccccc
Q 000833 567 QAKESN--Q-IEGIYGRMGDLGAI-DAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLG--VATFMILEKQVDL 639 (1263)
Q Consensus 567 ~~~~~~--~-~~g~~g~l~~l~~~-~~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g--~~~~~~l~~~~~~ 639 (1263)
.++... . ...+.||+|.++++ +|+|+.||+.++|+ |++|+|.++.|+..+..+++..+.+ +|+++...+ .++
T Consensus 482 ~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~-~~~ 560 (1074)
T KOG0250|consen 482 RAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSF-TPF 560 (1074)
T ss_pred HHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecC-Ccc
Confidence 333321 1 12367888888765 68999999999999 9999999999999999999998875 477666544 223
Q ss_pred ccccccCCCCCCc-ccccccccccCchhHHHHHHH--HhcCeEEecChHHHHHHHhcC--CCCcceEEeeCCceeecCcc
Q 000833 640 FPKMKEHFSTPEN-VPRLFDLIKVKDERMKLAFYA--AMGNTLVAKDLDQATRIAYSG--NKEFRRVVTLDGALFEKSGT 714 (1263)
Q Consensus 640 ~~~~~~~~~~~~~-~~~l~d~i~~~~~~~~~~~~~--~l~~~lv~~~~e~a~~~~~~~--~~~~~~~vTldG~~i~~~G~ 714 (1263)
. ......|+. ++++++++.|++|.|.+++.. .++.+++++|--+|..++..+ |.|+..|+|+||..+...|.
T Consensus 561 ~---y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 561 D---YSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred c---cccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCC
Confidence 2 121222333 789999999999999998874 477999999988888888654 67778899999987666554
Q ss_pred ---ccCCCCCC--CCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 715 ---MSGGGSKP--RGGKMGTSIRPTSVSAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKE 789 (1263)
Q Consensus 715 ---i~Gg~~~~--~~~~i~~~~~~~~~~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~ 789 (1263)
++.+.+.. ..++++. .....|..++.++..++.++..++....+.+..+...+..++.+...+...+..
T Consensus 638 ~~~~ySt~~~~~r~~~~~~~------s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~ 711 (1074)
T KOG0250|consen 638 NYRVYSTRGTRARRPGVDEF------SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRR 711 (1074)
T ss_pred CcceeccCCCCCCCccccch------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1123322 346788888888888888887777777777776666666666666666555555
Q ss_pred HHHHHHHHHHHH
Q 000833 790 IESLKSQHSYLE 801 (1263)
Q Consensus 790 l~~~~~~~~~~~ 801 (1263)
+.....++..+.
T Consensus 712 ~~~~~~em~el~ 723 (1074)
T KOG0250|consen 712 IRKKRAEMTELK 723 (1074)
T ss_pred HHHHHHHHHHHh
Confidence 554444444443
No 9
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=5.9e-55 Score=499.63 Aligned_cols=1001 Identities=17% Similarity=0.241 Sum_probs=504.5
Q ss_pred CCCCCCCCCceEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhh-hhhhcccccccccc
Q 000833 10 ASPGSRKWPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ-MRLNKVSELIHNST 88 (1263)
Q Consensus 10 ~~~~~~~~~~m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~-~r~~~~~~~i~~g~ 88 (1263)
++++-..-+-|-|-+|+|.||+.|.+... .|.|.||+|+||||||||||++|||.+||+++.. .|++.+.++|+.|
T Consensus 10 l~~~~~sf~~GsIvrI~l~NF~Ty~~~e~--~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G- 86 (1072)
T KOG0979|consen 10 LPLNYSSFPDGSIVRIELHNFLTYDHTEF--LPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRG- 86 (1072)
T ss_pred cCCCcccCCCCceEEEEEeeeeeeeeeee--cCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcC-
Confidence 33333344557799999999999998876 2356999999999999999999999999998887 5999999999999
Q ss_pred cCCCCCceEEEEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchh
Q 000833 89 NYQNLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQG 168 (1263)
Q Consensus 89 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg 168 (1263)
.+.++|++++.. .+.+++|+|.+.+++.|.|+|||..|+.++|.+++..|+|+++|+|.+.+|.
T Consensus 87 ----~~~g~IEI~l~~------------~~e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQD 150 (1072)
T KOG0979|consen 87 ----EDEGYIEIELKD------------KDETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQD 150 (1072)
T ss_pred ----CccceEEEEEec------------CCCceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHH
Confidence 889999999942 1347899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCCCCCCCchhHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHH
Q 000833 169 EVEQISLMKPKGQGPHDEGFLEYLEDIIGTD---RYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIA 244 (1263)
Q Consensus 169 ~v~~~~~~~~~~~~~~~~~~~~~le~~~g~~---~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 244 (1263)
.|..|+.++|. +++.-.+.++|-. .|...+.+...+...+.+.+ .....+. .+. .+
T Consensus 151 kV~EFa~L~pi-------~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~---~L~--------~~-- 210 (1072)
T KOG0979|consen 151 KVKEFARLSPI-------ELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLN---RLE--------DE-- 210 (1072)
T ss_pred HHHHHHcCChH-------HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHH--------HH--
Confidence 99999999997 4777788888855 67777777777777777666 4444444 332 33
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 245 WRFVCVSVLDVKNEAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHN 324 (1263)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~ 324 (1263)
.+.+.+..+...+.......++-+.....+..|.+...++..+......+..++..+.+....+....++++.+.
T Consensus 211 ----~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~- 285 (1072)
T KOG0979|consen 211 ----IDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEK- 285 (1072)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHH-
Confidence 444444444444444444444444444444445554555554444444444444444444333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHH
Q 000833 325 KYMRRQEELDNDLRVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLL 404 (1263)
Q Consensus 325 ~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 404 (1263)
.+...++......+.+........-+.+.........+....+.++++-...+..+......+...++.+.+..
T Consensus 286 ------~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 286 ------KETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred ------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 22222222222232222222222222233333333333333333333333333333333333333332222111
Q ss_pred HhhhHHHHHhhhhccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 405 KLFENVFIADTQNIITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFED 484 (1263)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 484 (1263)
. ......+...+..++..... ..+......++...
T Consensus 360 ~--------------------~e~~~~~~~ei~~~~~~~~~------~~~~~~~~~id~~~------------------- 394 (1072)
T KOG0979|consen 360 D--------------------PENPVEEDQEIMKEVLQKKS------SKLRDSRQEIDAEQ------------------- 394 (1072)
T ss_pred C--------------------ccccchhHHHHHHHHHHHHh------hhhhhhhhhhhHHH-------------------
Confidence 0 00001111111111000000 00000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh-hhhhHHHH
Q 000833 485 AQRQMDDILRRIDTKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSE-KSQGSVLK 563 (1263)
Q Consensus 485 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 563 (1263)
..... .. .+..+..++..... ..+++ .+... .+..++..
T Consensus 395 --~~~~~-----------~~------------------~l~~~kr~~~~~~~---~~~~k------~~~~l~~~~~d~~d 434 (1072)
T KOG0979|consen 395 --LKSQK-----------LR------------------DLENKKRKLKQNSD---LNRQK------RYRVLRQGSSDAYD 434 (1072)
T ss_pred --HHHHH-----------HH------------------HHHHHHHHHHHHhh---hhhhh------HHHHhccCchHHHH
Confidence 00000 00 00000000000000 00000 00001 12233445
Q ss_pred HHHHHHhcC-CCC-cceee-cccccccChhHHHHHHHhcCC--CCeEEEcchHHHHHHHHHHHhcCCCceeE--Eecccc
Q 000833 564 AILQAKESN-QIE-GIYGR-MGDLGAIDAKYDIAVSTACPG--LDYIVVETTSAAQACVELLRREKLGVATF--MILEKQ 636 (1263)
Q Consensus 564 ~l~~~~~~~-~~~-g~~g~-l~~l~~~~~~~~~aie~~lg~--L~~~vV~~~~~a~~~i~~lk~~~~g~~~~--~~l~~~ 636 (1263)
+..|..++. .+. .++|| +.++...+++|+.+|+..+|- +.+|||.+.+|...++..++..++....+ +|-+..
T Consensus 435 Ay~wlrenr~~FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k 514 (1072)
T KOG0979|consen 435 AYQWLRENRSEFKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREKK 514 (1072)
T ss_pred HHHHHHHCHHHhcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHHHHhhhcceeeeceeccccccc
Confidence 556655542 333 37787 566666789999999999986 99999999999999999988864322222 222221
Q ss_pred cccc--cccccCCCCCCcccccccccccCchhHHHH-HHHHhcCeEEec-ChHHHHHHHhcCCCCcceEEeeCCceeecC
Q 000833 637 VDLF--PKMKEHFSTPENVPRLFDLIKVKDERMKLA-FYAAMGNTLVAK-DLDQATRIAYSGNKEFRRVVTLDGALFEKS 712 (1263)
Q Consensus 637 ~~~~--~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~-~~~~l~~~lv~~-~~e~a~~~~~~~~~~~~~~vTldG~~i~~~ 712 (1263)
.+.. +.+...+...++.+.+.+++.+|+|...-. ..+.++.+.|.. +++.+...... .+-+.+|+++...
T Consensus 515 ~~d~~p~~sre~l~~lGF~gyls~f~~~p~~vm~~Lc~~~~ih~IPvs~~~~~e~~~~~~~------~~r~~~~~~~~~~ 588 (1072)
T KOG0979|consen 515 YADKIPAQSREELKRLGFEGYLSNFIEAPEPVMSYLCNVSKIHRIPVSKREVEEAIVEVLQ------NIRQPNGSVFLKR 588 (1072)
T ss_pred cccCCCccCHHHHHhcChHHHhhhhhcCcHHHHHHHHHhccccccccCcccccHHHHHHHh------ccccCCCchhHHH
Confidence 1110 000111122345567888888886432211 123355555533 45555433321 2335567654332
Q ss_pred ccccCCCCC-CCCCCCCccC---CC-CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 713 GTMSGGGSK-PRGGKMGTSI---RP-TSVSAEA---IINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELA 784 (1263)
Q Consensus 713 G~i~Gg~~~-~~~~~i~~~~---~~-~~~~~~~---i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~ 784 (1263)
.+.||... ...+.++... +. ..+..+- =..++......++.+..+.+++......++.++..+......++
T Consensus 589 -~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le 667 (1072)
T KOG0979|consen 589 -NIAGGRSKSIKKSAYGSRQVITRNDPLKSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELE 667 (1072)
T ss_pred -HhhcCchhhhhhhccccceeeecCCcchhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444421 1111111000 00 0000000 00111111222222333333333333333333332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhH
Q 000833 785 KSRKEIESLKSQHSYLEKQLDSLKAASEPRKDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKL 864 (1263)
Q Consensus 785 ~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l 864 (1263)
.....+..+..+...+...+...+ ....+++.+...+...+.++.... ...+...+...
T Consensus 668 ~~~~~~~~~~~er~~~~~~~~~~~-------~r~~~ie~~~~~l~~qkee~~~~~------~~~I~~~~~~~-------- 726 (1072)
T KOG0979|consen 668 EEQKKLKLLKRERTKLNSELKSYQ-------QRKERIENLVVDLDRQEEEYAASE------AKKILDTEDMR-------- 726 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHH--------
Confidence 222222111111111111100000 000011111111111111111100 00000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000833 865 KAQKLKVDKIQSDIDKSSTEINRHKVQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNT 944 (1263)
Q Consensus 865 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~ 944 (1263)
...++..+.... .+.. ..+...-.. ..-+...+..+. ++..+...+..+.-+.+...
T Consensus 727 ------~~~~~~~~~~~~-k~~e--~~i~~~~~~-------~~~~~s~~~~ie-----a~~~i~~~e~~i~~~~~~~~-- 783 (1072)
T KOG0979|consen 727 ------IQSIRWHLELTD-KHKE--IGIKEKNES-------SYMARSNKNNIE-----AERKIEKLEDNISFLEARED-- 783 (1072)
T ss_pred ------HHHHHHHHHHHH-HHHH--HHHHhhhhH-------HHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHH--
Confidence 001111110000 0000 000000000 000000000000 01111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhhhhhhhhhccC
Q 000833 945 QKLIDQHRDVLDKAKNDYEKLKKTVDELRASEIEADYKLQDLKRSYKELEMRGKGYK-KRLDDLQITLLKHLEQIQKDLV 1023 (1263)
Q Consensus 945 ~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~ 1023 (1263)
.++..+....+.......+ . .+..+...+.... ...+.. .
T Consensus 784 -----~lk~a~~~~k~~a~~~~~~------------~-------~~~t~~~~~~s~~~~~~ek~---~------------ 824 (1072)
T KOG0979|consen 784 -----LLKTALEDKKKEAAEKRKE------------Q-------SLQTLKREIMSPATNKIEKS---L------------ 824 (1072)
T ss_pred -----HHHHHHHHHHHHHHhcccc------------h-------hHHHhhhccccccccchhhH---H------------
Confidence 1111111111111111000 0 0000000000000 000000 0
Q ss_pred ChhhHHhhhhhhhhhchhhHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1024 DPEKLQATLADQTLSDACDLKRTLEMVALLE-AQLKELNPNLDSITEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWR 1102 (1263)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~-~~i~~l~~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~ 1102 (1263)
.....+.+ .|-+..++...|..-. +.+.-+++|..++.+|.....++..+..++......++.+.+.+.+..
T Consensus 825 ---~~~~e~~e----~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~k 897 (1072)
T KOG0979|consen 825 ---VLMKELAE----EPTTMDELDQAITDELTRALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVK 897 (1072)
T ss_pred ---HHHHHHHh----CCCcHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHH
Confidence 00000000 1123444544443333 355556899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCCcccccceeeecCC-Cc--cccccccCChhHHHHHHHHHHH
Q 000833 1103 KKRLDEFMAGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPP-KK--SWKNIANLSGGEKTLSSLALVF 1179 (1263)
Q Consensus 1103 ~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~lSGGek~~~~la~~~ 1179 (1263)
..|.........+|+..|...|+.+...|...|.. ++.|.-.-||.|+|.+- +. ..-+.+.=||||||.+++-+++
T Consensus 898 e~w~~~le~~V~~In~~Fs~~F~~mg~aGeV~L~~-~~~DydkwgI~ImVkFR~s~~L~~L~sh~QSGGERSVSTiLYLl 976 (1072)
T KOG0979|consen 898 EVWLPKLEEMVEQINERFSQLFSSMGCAGEVSLEV-NPLDYDKWGIMIMVKFRDSEGLKVLDSHRQSGGERSVSTILYLL 976 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCceEEecc-CcccHhHhceEEEEEEccCcccccccccccCCcchHHHHHHHHH
Confidence 99999999999999999999999987767666554 56666677899999872 22 2223455699999999999999
Q ss_pred HhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc---CCCeEEEEEcc--hhH-HHhcceeEEEEecC
Q 000833 1180 ALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT---KDAQFIIISLR--NNM-FELADRLVGIYKTD 1243 (1263)
Q Consensus 1180 a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~---~~~q~i~ith~--~~~-~~~ad~~~~v~~~~ 1243 (1263)
|++.+.|+||.|.|||..||||.|-+.|.++|...+ ..+|+++||+. |.+ +.-.=+++.|..|.
T Consensus 977 ALQ~l~~~PFRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFliTPKLLpgL~Ysenm~Il~v~ng~ 1046 (1072)
T KOG0979|consen 977 ALQELTPAPFRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLITPKLLPGLDYSENMKILCVMNGP 1046 (1072)
T ss_pred HHhhccCCCeeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEecchhcCCCChhhcceEEEEecCC
Confidence 999999999999999999999999999999988765 26899999988 333 33344566666664
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=465.99 Aligned_cols=153 Identities=22% Similarity=0.370 Sum_probs=112.4
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|++|.|.||+||.+.++ +|++|+|+|+|||||||||||+||+|+|++... +.....++|+.| .+.++|+
T Consensus 1 M~i~~l~l~nf~~~~~~~~--~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~--~~~~~~~~~~~~-----~~~~~v~ 71 (880)
T PRK02224 1 MRFDRVRLENFKCYADADL--RLEDGVTVIHGVNGSGKSSLLEACFFALYGSKA--LDDTLDDVITIG-----AEEAEIE 71 (880)
T ss_pred CeEEEEEEECcccccceEE--ecCCCeEEEECCCCCCHHHHHHHHHHHhCCCcc--ccccHHHHHhCC-----CCcEEEE
Confidence 8999999999999998765 899999999999999999999999998765332 223456778776 6679999
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeecCCC----ceEEE-cCcc------cCHHHHHHHHHhCCCCCC--CCccccc
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNS----SKYYI-NDRP------SNFTEVTKKLKGKGVDLD--NNRFLIL 166 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~----~~y~i-n~~~------~~~~~~~~~~~~~~i~~~--~~~~~i~ 166 (1263)
++|.. ++..|.|.|.+...|. +.|++ +|.. .....|..++ |++.+ .++++|+
T Consensus 72 ~~f~~------------~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll---g~~~~~f~~~~~i~ 136 (880)
T PRK02224 72 LWFEH------------AGGEYHIERRVRLSGDRATTAKCVLETPEGTIDGARDVREEVTELL---RMDAEAFVNCAYVR 136 (880)
T ss_pred EEEEE------------CCEEEEEEEEEecCCCCcccceeEEeCCCccccChHHHHHHHHHHH---CCCHHHhcceeEee
Confidence 99931 2346788888754442 33443 3321 1223455554 54332 2245799
Q ss_pred hhhHHHHHhcCCCCCCCCchhHHHHHHHHhhhhhhHH
Q 000833 167 QGEVEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVE 203 (1263)
Q Consensus 167 qg~v~~~~~~~~~~~~~~~~~~~~~le~~~g~~~~~~ 203 (1263)
||+++.|+.++|. ++..+|++++|+..|..
T Consensus 137 Qge~~~~l~~~p~-------~R~~ii~~l~~l~~~e~ 166 (880)
T PRK02224 137 QGEVNKLINATPS-------DRQDMIDDLLQLGKLEE 166 (880)
T ss_pred ccChHHHHcCCHH-------HHHHHHHHHhCCHHHHH
Confidence 9999999999996 47999999999877654
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=455.28 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=122.5
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCc-chhhhhhhcccccccccccCCCCCceEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGK-RAKQMRLNKVSELIHNSTNYQNLDSAGV 98 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~-~~~~~r~~~~~~~i~~g~~~~~~~~a~v 98 (1263)
|+|.+|.|.||+||.+.++ +|++|+|+|+|||||||||||+||+|+|++ .+...|+....++|+.| .+.|+|
T Consensus 1 m~i~~l~i~nf~~~~~~~i--~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~v 73 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSVV--EFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIG-----GSGTEI 73 (880)
T ss_pred CeeEEEEEeCccCccCceE--ecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCC-----CCCEEE
Confidence 8999999999999998765 899999999999999999999999998765 34334555556888876 567999
Q ss_pred EEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEE-cCc---ccCHHHHHHHHHh-CCCCCCCCccccchhhHHHH
Q 000833 99 SVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYI-NDR---PSNFTEVTKKLKG-KGVDLDNNRFLILQGEVEQI 173 (1263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~i-n~~---~~~~~~~~~~~~~-~~i~~~~~~~~i~qg~v~~~ 173 (1263)
.++|.. .|..+.|.|.+.++ .+.+++ +|. ..+.+++...+.. ++.++-..+++++||++..|
T Consensus 74 ~~~f~~------------~~~~~~i~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~ 140 (880)
T PRK03918 74 ELKFEK------------NGRKYRIVRSFNRG-ESYLKYLDGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAI 140 (880)
T ss_pred EEEEEE------------CCeEEEEEEEEcCC-ceEEEECCCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHH
Confidence 999931 34578889988553 344434 553 2344555555443 12222222356899999999
Q ss_pred HhcCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000833 174 SLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLF 216 (1263)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~ 216 (1263)
+. .|. ++.++|+.++|++.|...+..+......+.
T Consensus 141 ~~-~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (880)
T PRK03918 141 LE-SDE-------SREKVVRQILGLDDYENAYKNLGEVIKEIK 175 (880)
T ss_pred hc-CcH-------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 75 674 589999999999999887776665544444
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.9e-41 Score=441.82 Aligned_cols=183 Identities=19% Similarity=0.304 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccEE-EEecCCCCc---
Q 000833 1068 TEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQMITLGGDAE-LELVDSLDP--- 1143 (1263)
Q Consensus 1068 ~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~--- 1143 (1263)
.+|.....+|....-++....-..++|.+-...++..+..-.......||..+.++|...+.|.... +.+ .+...
T Consensus 1094 ~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~~~~~~~~~~i~~-~~~~~~~~ 1172 (1311)
T TIGR00606 1094 PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEI-RSDADENV 1172 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHhhc-CCCCChHH
Confidence 5666666667666666666666666776666666665555444556778888999999998765432 222 12110
Q ss_pred c----cccceeee-cCCCc-cccccccCChhHHH------HHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHH
Q 000833 1144 F----SEGVVFSV-RPPKK-SWKNIANLSGGEKT------LSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYV 1211 (1263)
Q Consensus 1144 ~----~~~~~~~~-~~~~~-~~~~~~~lSGGek~------~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l 1211 (1263)
. .....|.+ .|.|. ....+..|||||++ +++||.+|+. +|+++||||||+|||+.++..+...|
T Consensus 1173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~----~~~il~lDEPt~~lD~~~~~~l~~~l 1248 (1311)
T TIGR00606 1173 SASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCL----NCGIIALDEPTTNLDRENIESLAHAL 1248 (1311)
T ss_pred HHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhc----CCCEEEeeCCcccCCHHHHHHHHHHH
Confidence 0 01122222 33332 23345689999999 6666666654 48999999999999999999999888
Q ss_pred HHhc------CCCeEEEEEcchhHHH------hcceeEEEEec-CCCceeEEecCCc
Q 000833 1212 KDRT------KDAQFIIISLRNNMFE------LADRLVGIYKT-DNCTKSITINPGS 1255 (1263)
Q Consensus 1212 ~~~~------~~~q~i~ith~~~~~~------~ad~~~~v~~~-~~~s~~~~~~~~~ 1255 (1263)
..+. .+.++|+|||++..+. .|++.|.|.+. .+.|.+...+|..
T Consensus 1249 ~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1305 (1311)
T TIGR00606 1249 VEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSS 1305 (1311)
T ss_pred HHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCcc
Confidence 7652 3679999999976542 57899999995 4677777777764
No 13
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=6.1e-41 Score=431.18 Aligned_cols=168 Identities=22% Similarity=0.330 Sum_probs=129.4
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|++|.|.||+||.+.++ +|++|+|+|+|||||||||||+||+|+|++.. |+....++|+.| .+.|+|+
T Consensus 1 M~i~~l~l~NF~s~~~~~i--~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~---~~~~~~~~i~~~-----~~~~~V~ 70 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEI--EFDTGINIITGKNGAGKSSIVDAIRFALFTDK---RTEKIEDMIKKG-----KNNLEVE 70 (895)
T ss_pred CeEEEEEEeCccCCCCceE--ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCc---ccccHHHHhhCC-----CCeEEEE
Confidence 8999999999999998765 89999999999999999999999999876542 334457888877 5689999
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeecCCC-----ceEEEcCcccCH--HHHHHHHH--hCCCCCC--CCccccchh
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNS-----SKYYINDRPSNF--TEVTKKLK--GKGVDLD--NNRFLILQG 168 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~-----~~y~in~~~~~~--~~~~~~~~--~~~i~~~--~~~~~i~qg 168 (1263)
++|.. +|..+.|.|.+.+.|. ..|++||.+++. .++...+. -+|++.+ .+++++.||
T Consensus 71 l~f~~------------~g~~y~i~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg 138 (895)
T PRK01156 71 LEFRI------------GGHVYQIRRSIERRGKGSRREAYIKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQG 138 (895)
T ss_pred EEEEE------------CCEEEEEEEEEecCCCCCCceEEEecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEecc
Confidence 99931 3457889999865442 346679987663 56677654 2455433 223468899
Q ss_pred hHHHHHhcCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000833 169 EVEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLF 216 (1263)
Q Consensus 169 ~v~~~~~~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~ 216 (1263)
++..++.++|. +++.+|++++|+..|...++.+...+..+.
T Consensus 139 ~~~~l~~~~~~-------~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~ 179 (895)
T PRK01156 139 EMDSLISGDPA-------QRKKILDEILEINSLERNYDKLKDVIDMLR 179 (895)
T ss_pred chHHHHhCCHH-------HHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99999999996 479999999999999877766665555544
No 14
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-36 Score=385.07 Aligned_cols=173 Identities=24% Similarity=0.365 Sum_probs=123.9
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|.+|.|.||.||.+.++.+-|+.|+|+|+||||||||||||||+|+|.++...++.....++|+.| ...|+|+
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~~~~~~~~i~~g-----~~~~~V~ 75 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIRAG-----EKSASVE 75 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCccchhhhHHHhcC-----CccEEEE
Confidence 89999999999999987773348899999999999999999999999765543333345566888887 6669999
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeecCCC------ceEEEcCcccCH--HHHHHHHH-hCCCCCC--CCccccchh
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNS------SKYYINDRPSNF--TEVTKKLK-GKGVDLD--NNRFLILQG 168 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~------~~y~in~~~~~~--~~~~~~~~-~~~i~~~--~~~~~i~qg 168 (1263)
++|.. .|..|.|.|.+.++++ +.-..+|.++.. .++...+. .+|++.+ -.+++++||
T Consensus 76 l~F~~------------~g~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QG 143 (908)
T COG0419 76 LEFEV------------NGKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQG 143 (908)
T ss_pred EEEEE------------CCEEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccH
Confidence 99941 3457888888655544 111225544332 34444333 3355422 223579999
Q ss_pred hHHHHHhcCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000833 169 EVEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLF 216 (1263)
Q Consensus 169 ~v~~~~~~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~ 216 (1263)
+++.|+..+|. ++..+|+++.|+..|..-+..+......+.
T Consensus 144 e~~~fl~~~~~-------er~~il~~l~~l~~~e~~~~~l~e~~~~~~ 184 (908)
T COG0419 144 EFDAFLKSKPK-------ERKEILDELFGLEKYEKLSELLKEVIKEAK 184 (908)
T ss_pred hHHHHHhcCcH-------HHHHHHHHHhCchhHHHHHHHHHHHHHHHH
Confidence 99999999997 478999999999987776666555555444
No 15
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=1.4e-32 Score=350.60 Aligned_cols=211 Identities=17% Similarity=0.143 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHHHc----CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q 000833 1042 DLKRTLEMVALLEAQLKEL----NPNL-DSITEYRRKVAAYNERVEDLTTVTQQRDDV---------------KKQYDEW 1101 (1263)
Q Consensus 1042 ~~~~l~~~i~~l~~~i~~l----~~nl-~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l---------------~~~~~~l 1101 (1263)
.++.+..++..++..+... .... +....+...+.+...|...|+..+..+..- ...+..+
T Consensus 1212 t~e~Le~ei~rl~~~L~e~Er~L~~s~eEVa~~l~~rI~~a~~~V~~mN~~L~~i~f~~~~~~rL~~~~~~~f~~~l~~~ 1291 (1486)
T PRK04863 1212 AIEQMEIELSRLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFGQVKSVRLNVNVRETHAMLLDAL 1291 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeeecHHHHHHHHHh
Confidence 4566777887777777664 3444 455777888888999999999888776651 1111111
Q ss_pred HHHH---HHHHHHHHH-HHHHHHHHHHHHhcCCccE--------EEEecCCCCcccccceeeecCCCccccccccCChhH
Q 000833 1102 RKKR---LDEFMAGFN-AISLKLKEMYQMITLGGDA--------ELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGE 1169 (1263)
Q Consensus 1102 ~~~~---~~~f~~~~~-~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGe 1169 (1263)
.... .+.|... . .+...+..+|..+.++... .-.+.|.-..+.-.+...-+..+........|||||
T Consensus 1292 ~~~~~~~~~l~~~~-~~~~~~~l~~l~~r~~~~~~~~~r~~~~~~~~~lDyR~~~~f~~~~~~g~~~~~~~~~~~lSgGE 1370 (1486)
T PRK04863 1292 SEQQEQHQDLFNSA-RLTFSEALAKLYQRLNPHIDMGQRTPQTIGEELLDYRNYLELEVEVNRGADGWLRAESGALSTGE 1370 (1486)
T ss_pred hcchhhHHHHHhcc-chhHHHHHHHHHHHhcccccccccccccccccccccccceEEEEEEecCCcceeecCCCCCCcch
Confidence 1111 0112111 1 1235566677766443110 000111111111112221111122233467899999
Q ss_pred HHHHHHHHHHH---hccCCCCC----------eEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhccee
Q 000833 1170 KTLSSLALVFA---LHHYKPTP----------LYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRL 1236 (1263)
Q Consensus 1170 k~~~~la~~~a---~~~~~~~p----------~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~ 1236 (1263)
|+.+++++++| +|....+| +++|||+ +++|..++..++.+++ .-+.||||+|+...-..-+ .+
T Consensus 1371 ~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~--~~~~q~i~~tP~~~~~~~g-~~ 1446 (1486)
T PRK04863 1371 AIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCE--RLDMQLLIAAPENISPEKG-TT 1446 (1486)
T ss_pred hHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHH--HcCCcEEEechhhccCCCC-cc
Confidence 99999999888 66422221 2378999 9999999999999886 3379999999986444334 56
Q ss_pred EEEEec--CCCceeEEecCCccc
Q 000833 1237 VGIYKT--DNCTKSITINPGSFT 1257 (1263)
Q Consensus 1237 ~~v~~~--~~~s~~~~~~~~~~~ 1257 (1263)
|.+.+. ++...|..+-++.|.
T Consensus 1447 ~~l~rk~~~~~~~v~v~g~r~~~ 1469 (1486)
T PRK04863 1447 YKLVRKVFNNREHVHVVGLRGFA 1469 (1486)
T ss_pred eeeeeeecCCceEEEEeeccccc
Confidence 655432 234455555444443
No 16
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.2e-31 Score=343.21 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=121.4
Q ss_pred eEEEEEEecCccccCCCcccccCCC--cceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHK--SFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAG 97 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~--~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~ 97 (1263)
|+|.+|+|+||+||.+.+.| +|.+ |+++|+||||||||||||||+|+|++.+.. .+. .+.+..+...++...|+
T Consensus 1 M~~~~L~l~nf~s~~~~~~i-dF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~--~~~-~~~~~~~~~~~~~~~~~ 76 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTI-DFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPR--RSE-VIRSLNSLYAAPSEAAF 76 (1042)
T ss_pred CeeeEEEEeCeeccCCCcee-eecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCC--CCc-cccccchhhcCCCCCeE
Confidence 89999999999999987555 7876 999999999999999999999987654322 111 12233333334467889
Q ss_pred EEEEEeeccccCCCcccccCCceEEEEEEee-----cCCCceEEE-------cCccc--CHHHHHHHHH-hCCCCCCCC-
Q 000833 98 VSVHFQEIVDLDDGTYEAIQGSDFVISRVAF-----RDNSSKYYI-------NDRPS--NFTEVTKKLK-GKGVDLDNN- 161 (1263)
Q Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~-----~~~~~~y~i-------n~~~~--~~~~~~~~~~-~~~i~~~~~- 161 (1263)
|+++|. + ++ ..|.|.|.+. .+|...+.+ +|..+ +..++...+. -+|++.+.+
T Consensus 77 v~l~F~-~---~g--------~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~ 144 (1042)
T TIGR00618 77 AELEFS-L---GT--------KIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFT 144 (1042)
T ss_pred EEEEEE-E---CC--------EEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHh
Confidence 999993 1 12 2333333321 223222211 22322 2255666444 357766543
Q ss_pred -ccccchhhHHHHHhcCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccc
Q 000833 162 -RFLILQGEVEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMR 226 (1263)
Q Consensus 162 -~~~i~qg~v~~~~~~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 226 (1263)
+++++||++..|+.++|. ++.++|++++|++.|..-...+.+....+...+ ....++.
T Consensus 145 ~~~~l~Qg~~~~fl~a~~~-------eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (1042)
T TIGR00618 145 RVVLLPQGEFAQFLKAKSK-------EKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQ 204 (1042)
T ss_pred hheeecccchHHHHhCCHH-------HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 257899999999999996 479999999999999876666666655555555 4444444
No 17
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=1.5e-30 Score=333.20 Aligned_cols=182 Identities=19% Similarity=0.312 Sum_probs=117.4
Q ss_pred eEEEEEEecCccccCCCcccccCC------CcceEEEcCCCCChhHHHHHHHHHcCcchhhh-hh-hcccccccccccCC
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFH------KSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQM-RL-NKVSELIHNSTNYQ 91 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~------~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~-r~-~~~~~~i~~g~~~~ 91 (1263)
|+|.+|.|.||.||.+...| +|. .|+++|+||||||||||||||+|+|++....+ +. ..+.+++..|
T Consensus 1 Mk~~~l~~~nf~s~~~~~~i-df~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~---- 75 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKI-DFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRD---- 75 (1047)
T ss_pred CcceEEEeecceeEcCCceE-EEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCC----
Confidence 89999999999999875544 552 69999999999999999999999887654433 22 3445666555
Q ss_pred CCCceEEEEEEeeccccCCCcccccCCceEEEEEEe----ec-CCC-----c-eEEE-cCcccC--HHHHHHHHH-hCCC
Q 000833 92 NLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVA----FR-DNS-----S-KYYI-NDRPSN--FTEVTKKLK-GKGV 156 (1263)
Q Consensus 92 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~----~~-~~~-----~-~y~i-n~~~~~--~~~~~~~~~-~~~i 156 (1263)
...|+|+++|. + ++..|.|.|.+ .+ +|. . -|.+ +|..+. ..++...+. -+|+
T Consensus 76 -~~~~~v~~~F~-~-----------~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl 142 (1047)
T PRK10246 76 -TAECLAEVEFE-V-----------KGEAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGL 142 (1047)
T ss_pred -CcceEEEEEEE-E-----------CCeEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCC
Confidence 67799999993 1 12234443322 11 111 0 1122 232211 123333211 2254
Q ss_pred CCC--CCccccchhhHHHHHhcCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hhhhccc
Q 000833 157 DLD--NNRFLILQGEVEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI-GLNHSMR 226 (1263)
Q Consensus 157 ~~~--~~~~~i~qg~v~~~~~~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 226 (1263)
+.+ ..+++++||++..|+.++|. ++..+|++++|+..|..-...+..........+ ....++.
T Consensus 143 ~~~~F~~~v~l~QG~f~~fl~a~~~-------eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 143 DYGRFTRSMLLSQGQFAAFLNAKPK-------ERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred CHHHhhhheeeccccHHHHHhCChH-------HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 433 33457999999999999997 479999999999999865555555555555554 4444444
No 18
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=100.00 E-value=3e-31 Score=345.25 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=66.3
Q ss_pred cccccCChhHHHHHHHHHHHHh----c----cCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-
Q 000833 1160 KNIANLSGGEKTLSSLALVFAL----H----HYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF- 1230 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~----~----~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~- 1230 (1263)
..++.||||||+++++.++||- . ...+|++++||||++|||+.++..++++|..+ +.||||+||...-.
T Consensus 1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~Wg~Y 1320 (1353)
T TIGR02680 1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREWGCY 1320 (1353)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchhccc
Confidence 3578999999999987666661 1 22467799999999999999999999999888 68999999984221
Q ss_pred -H-hcceeEEEEecCCCceeEEe
Q 000833 1231 -E-LADRLVGIYKTDNCTKSITI 1251 (1263)
Q Consensus 1231 -~-~ad~~~~v~~~~~~s~~~~~ 1251 (1263)
. -+=.||-+.+.++. ..|++
T Consensus 1321 ~tVp~laI~el~R~~~~-~~V~v 1342 (1353)
T TIGR02680 1321 PEVPGLAICQLLRPDGV-DAVTV 1342 (1353)
T ss_pred cCCCcceEEEEecCCCC-CEEEE
Confidence 1 12246666666664 35554
No 19
>PRK10869 recombination and repair protein; Provisional
Probab=100.00 E-value=4.4e-34 Score=338.25 Aligned_cols=205 Identities=15% Similarity=0.201 Sum_probs=176.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1039 DACDLKRTLEMVALLEAQLKELNPNLDSITEYR----RKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFN 1114 (1263)
Q Consensus 1039 ~~~~~~~l~~~i~~l~~~i~~l~~nl~~~~e~~----~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~ 1114 (1263)
+|..++++++++..+....+++++.++.+-.|. ..+..+......+..+..+...+...+..+..++...++.++.
T Consensus 294 dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~ 373 (553)
T PRK10869 294 DPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAK 373 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999998887766 3445556677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CccEEEEecCCCCc-cccc---ceeeecC-CCccccccc-cCChhHHHHHHHHHHHHhccCCCC
Q 000833 1115 AISLKLKEMYQMITL-GGDAELELVDSLDP-FSEG---VVFSVRP-PKKSWKNIA-NLSGGEKTLSSLALVFALHHYKPT 1187 (1263)
Q Consensus 1115 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~-~~~~---~~~~~~~-~~~~~~~~~-~lSGGek~~~~la~~~a~~~~~~~ 1187 (1263)
.+...+......|.| ++.+.+.+.....+ ...| |.|.+.+ ||.+.+|+. .|||||++|++||+.+++....+|
T Consensus 374 ~l~~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~ 453 (553)
T PRK10869 374 ELAQLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMET 453 (553)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999887 56777776432111 3445 8898886 677888876 699999999999999999877889
Q ss_pred CeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecC
Q 000833 1188 PLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1188 p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
|++||||||+|||+.....++++|++++.++|||||||+|.++.+||++|.|.++.
T Consensus 454 ~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 454 PALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 99999999999999999999999999988899999999999999999999999965
No 20
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=100.00 E-value=5.9e-31 Score=316.52 Aligned_cols=205 Identities=16% Similarity=0.210 Sum_probs=170.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1039 DACDLKRTLEMVALLEAQLKELNPNLDSITEYR----RKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFN 1114 (1263)
Q Consensus 1039 ~~~~~~~l~~~i~~l~~~i~~l~~nl~~~~e~~----~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~ 1114 (1263)
+|..+..+++++..++...+++++.+..+..+. ..+..+......+..+..++..+...+..+...+...+..+..
T Consensus 299 dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~ 378 (563)
T TIGR00634 299 DPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAE 378 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999888776655 3444455566788889999999999999999999988999999
Q ss_pred HHHHHHHHHHHHhcC-CccEEEEecCCCCc------cccc---ceeeecC-CCcccccc-ccCChhHHHHHHHHHHHHhc
Q 000833 1115 AISLKLKEMYQMITL-GGDAELELVDSLDP------FSEG---VVFSVRP-PKKSWKNI-ANLSGGEKTLSSLALVFALH 1182 (1263)
Q Consensus 1115 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~------~~~~---~~~~~~~-~~~~~~~~-~~lSGGek~~~~la~~~a~~ 1182 (1263)
.+...+...+..|.+ ++.+.+.+.....+ ...| |.|.+.+ ||.+.+|+ ..|||||++|++||+.+++.
T Consensus 379 ~l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~G~d~v~f~~~~n~g~~~~pl~~~lSgGe~~rv~la~~l~~~ 458 (563)
T TIGR00634 379 RLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPVKPLAKVASGGELSRVMLALKVVLS 458 (563)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCCCceEEEEEEecCCCCCCCChhhhcCHhHHHHHHHHHHHhhC
Confidence 999999999999877 45666655322111 2334 8888886 67777887 57999999999999999987
Q ss_pred cCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecC
Q 000833 1183 HYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1183 ~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
...+||++||||||+|||+..+..++++|.+++.+.|||||||++.++.+||++|.|.++.
T Consensus 459 ~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 459 SSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 5566899999999999999999999999999888899999999999999999999999974
No 21
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.97 E-value=2.4e-21 Score=233.94 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccEEEE-e-cCCCC----cccccceeeecCCCccccccc-cCChhHHHHHHHHHH
Q 000833 1106 LDEFMAGFNAISLKLKEMYQMITLGGDAELE-L-VDSLD----PFSEGVVFSVRPPKKSWKNIA-NLSGGEKTLSSLALV 1178 (1263)
Q Consensus 1106 ~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~-~lSGGek~~~~la~~ 1178 (1263)
....|.. |+.-+.+.|...+-|.+..-. + ++..+ ..+.+..+.+. .|...-.+. .=|.|||.+++|.+.
T Consensus 1122 Hs~KMee---iN~iI~elW~~tYrG~Did~IrIrsD~~~s~~~~rsYnyrVv~~-kgd~eldMRGRcSAGQKvLAsliIR 1197 (1294)
T KOG0962|consen 1122 HSMKMEE---INRIIRELWRKTYRGTDIDYIKIRSDSVSSSDKRRTYNYRVVMV-KGDTELDMRGRCSAGQKVLASLIIR 1197 (1294)
T ss_pred HHHHHHH---HHHHHHHHHHhccCCCCcceEEEeeccccccccccccceeEEEE-echHHHHhccCccchHHHHHHHHHH
Confidence 3444544 555588899998877654321 1 12111 12222222111 121111222 239999999999999
Q ss_pred HHhccC--CCCCeEEeecCcCCCCHHHHHHHHHHHHH----h--cCCCeEEEEEcchhHH------HhcceeEEEEec-C
Q 000833 1179 FALHHY--KPTPLYVMDEIDAALDFKNVSIVGHYVKD----R--TKDAQFIIISLRNNMF------ELADRLVGIYKT-D 1243 (1263)
Q Consensus 1179 ~a~~~~--~~~p~~ilDE~d~~ld~~~~~~~~~~l~~----~--~~~~q~i~ith~~~~~------~~ad~~~~v~~~-~ 1243 (1263)
+|++.+ ..|.++-|||||++||..|+..++..|.. . ..+.|.|+|||+..+. .+++++|.|.+. .
T Consensus 1198 LALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~kd~~ 1277 (1294)
T KOG0962|consen 1198 LALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVKKDES 1277 (1294)
T ss_pred HHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhcccchheeeecccch
Confidence 998875 45679999999999999999998876543 2 2488999999996544 478999999986 4
Q ss_pred CCceeEEecC
Q 000833 1244 NCTKSITINP 1253 (1263)
Q Consensus 1244 ~~s~~~~~~~ 1253 (1263)
++|.++-..+
T Consensus 1278 ~~s~i~~~~~ 1287 (1294)
T KOG0962|consen 1278 QISMIVKHSI 1287 (1294)
T ss_pred hcceeeeecC
Confidence 5666655443
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.96 E-value=6.2e-21 Score=259.04 Aligned_cols=629 Identities=18% Similarity=0.229 Sum_probs=277.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHh
Q 000833 448 EPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQMDDILRRIDTKT-----TAIRNMQGDLEKNKLEAMEAHN 522 (1263)
Q Consensus 448 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~ 522 (1263)
..+...+..+...+..+..++..+...+..+..++..+..++..+...+..+. ..+..+...+..+..++..+..
T Consensus 375 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (1179)
T TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444433333333 3334555555555555555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCcceeecccccccChhHHHHHHHhcCC-
Q 000833 523 VEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQGSVLKAILQAKESNQIEGIYGRMGDLGAIDAKYDIAVSTACPG- 601 (1263)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~g~l~~l~~~~~~~~~aie~~lg~- 601 (1263)
.+..++..+..+...+..+..++..+...+..+......+..+.. ...|+.|.+++++.+++.| ..++|.
T Consensus 455 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~-----~~~~~~~~v~~~i~v~~~~----~~~~g~~ 525 (1179)
T TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-----NLEGFSEGVKALLKNQSGL----SGILGVL 525 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccchhHHHHHHhccccc----CCCccch
Confidence 555555555555555555555555555544433221111111111 1346777888888877765 336666
Q ss_pred CCeEEEcchHHHHHHHHHHHhcCCCceeEEecccccccc---cccccCCCCCCcccccccccccCc--hhHHHHHHHHhc
Q 000833 602 LDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLF---PKMKEHFSTPENVPRLFDLIKVKD--ERMKLAFYAAMG 676 (1263)
Q Consensus 602 L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~l~d~i~~~~--~~~~~~~~~~l~ 676 (1263)
+..++|+ +.+..++..+.. |++++++++...... ........+..++.+ ++.|.++. ..+.+.+.+.+|
T Consensus 526 ~~li~~~--~~~~~a~~~~~g---~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~-l~~i~~~~~~~~~~~~~~~~~~ 599 (1179)
T TIGR02168 526 SELISVD--EGYEAAIEAALG---GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLP-LDSIKGTEIQGNDREILKNIEG 599 (1179)
T ss_pred hceeeeC--hhHHHHHHHHHH---HHhcCeEECCHHHHHHHHHHhcccCCCcEEEee-ccccccccccccchhhccccCc
Confidence 5666664 444445554332 344544444322110 001111111112222 35555431 123344555667
Q ss_pred CeEEecChHH---HHHHH--hcCCCCcceEEe-------------eCCceeecCccc--cCCCCCCCCCCCCccCCCCCC
Q 000833 677 NTLVAKDLDQ---ATRIA--YSGNKEFRRVVT-------------LDGALFEKSGTM--SGGGSKPRGGKMGTSIRPTSV 736 (1263)
Q Consensus 677 ~~lv~~~~e~---a~~~~--~~~~~~~~~~vT-------------ldG~~i~~~G~i--~Gg~~~~~~~~i~~~~~~~~~ 736 (1263)
++.++.|+.. +...+ +.... .++|| ++|++++++|.+ +||.. .++ . ..
T Consensus 600 ~~~~~~dl~~~~~~~~~~~~~~~~~--~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~--~~~----~----~~ 667 (1179)
T TIGR02168 600 FLGVAKDLVKFDPKLRKALSYLLGG--VLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVI--TGG----S----AK 667 (1179)
T ss_pred hhHHHHHHhcccHhHHHHHHHHhCC--ceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceE--ecC----c----cc
Confidence 7766666544 32221 11112 47898 599999999844 34431 111 1 12
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 000833 737 SAEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLKAASEPRKD 816 (1263)
Q Consensus 737 ~~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 816 (1263)
...++..+..++..+...+..+...+..+...+..+...+..+...+..++..+..+...+..+...+..+..
T Consensus 668 ~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 740 (1179)
T TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA------- 740 (1179)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3456667777777777777777777776666666666666666666655555555444444444433333322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 817 EIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKLKAQKLKVDKIQSDIDKSSTEINRHKVQIETAQ 896 (1263)
Q Consensus 817 ~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~le 896 (1263)
++..+..++..+..++..+...+..+...+..+...+.... ..+......+..+...+..+...+..+...+..+.
T Consensus 741 ---~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 816 (1179)
T TIGR02168 741 ---EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE-AEIEELEAQIEQLKEELKALREALDELRAELTLLN 816 (1179)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444444444444444433332221 11122222233333333333333443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 897 KMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLKKTVDELRASE 976 (1263)
Q Consensus 897 ~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 976 (1263)
..+......+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+....
T Consensus 817 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 896 (1179)
T TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCChhhHHhhhhhhhhhchhhHHHHHHHHHHHHHH
Q 000833 977 IEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQATLADQTLSDACDLKRTLEMVALLEAQ 1056 (1263)
Q Consensus 977 ~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~ 1056 (1263)
..+...+..+...+..+...+..+...+..+...+......+. .....+... .. ............+...
T Consensus 897 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~-------e~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 966 (1179)
T TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID-------NLQERLSEE-YS--LTLEEAEALENKIEDD 966 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-hc--cCHHHHHhhccccccC
Confidence 3333333333222222222222222222222111110000000 000000000 00 0000000000001222
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 000833 1057 LKELNPNLDSITEYRRKVAAYNERV----EDLTTVTQQRDDVKKQYDEWRKKRL---DEFMAGFNAISLKLKEMYQMI 1127 (1263)
Q Consensus 1057 i~~l~~nl~~~~e~~~~~~~~~~~~----~~l~~l~~~~~~l~~~~~~l~~~~~---~~f~~~~~~~~~~~~~~~~~l 1127 (1263)
+..+...+ ..+..++++|.... +++.++..+..++......+...+. ..+...|......|..+|..+
T Consensus 967 ~~~l~~~i---~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f 1041 (1179)
T TIGR02168 967 EEEARRRL---KRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQV 1041 (1179)
T ss_pred HHHHHHHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333 33334777887666 9999999999999888877776543 334455533355566555554
No 23
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.95 E-value=6.4e-27 Score=249.79 Aligned_cols=127 Identities=33% Similarity=0.553 Sum_probs=97.3
Q ss_pred EEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcc-hhhhhhhcccccccccccCCCCCceEEE
Q 000833 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 21 ~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~-~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
||++|+|.||+||.+.+...+|++++|+|+||||||||||++||.|+||.+ ...+|.....++|+..........|+|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 799999999999985444448999999999999999999999999999975 4568999999999873333347889999
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHH
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLK 152 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~ 152 (1263)
+.|.+ .+.. ......++.|.|.+.+++.+.|+||+.+++.+++..++.
T Consensus 81 ~~~~~----~~~~-~~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~ 128 (220)
T PF02463_consen 81 LIFDN----SDEE-FELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLP 128 (220)
T ss_dssp EEEEC----TTEE-SSSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHH
T ss_pred ccccc----cccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 99943 2221 223566789999999999999999999999998877764
No 24
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.95 E-value=3.5e-24 Score=241.38 Aligned_cols=339 Identities=17% Similarity=0.235 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 893 ETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLKKTVDEL 972 (1263)
Q Consensus 893 ~~le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~ 972 (1263)
......|+...+++..+.....+..++++.++.+++++...--...+ .+++......+....+..+.+......+
T Consensus 160 ~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE-----~e~L~~e~~rLsn~ekl~~~~~~a~~~L 234 (557)
T COG0497 160 QEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGE-----DEELEEERKRLSNSEKLAEAIQNALELL 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444455555566666666666677777777777766643322222 2344444555555555555555555444
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCChhhHHhhhhhhhhhchhhHHHHHHHH
Q 000833 973 RASE--IEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQATLADQTLSDACDLKRTLEMV 1050 (1263)
Q Consensus 973 ~~~~--~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 1050 (1263)
..+. ......+......+..+.. +...+..+...+.+ ..+.+.+....+..+.+.--.+|..++++++|+
T Consensus 235 ~ge~~~~~~~~~l~~a~~~l~~~~~----~d~~l~~~~~~l~e----a~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl 306 (557)
T COG0497 235 SGEDDTVSALSLLGRALEALEDLSE----YDGKLSELAELLEE----ALYELEEASEELRAYLDELEFDPNRLEEVEERL 306 (557)
T ss_pred hCCCCchhHHHHHHHHHHHHHHhhc----cChhHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3211 1111222222222221111 11112221111111 111111111111222222223456789999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1051 ALLEAQLKELNPNLDSITEYRR----KVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQM 1126 (1263)
Q Consensus 1051 ~~l~~~i~~l~~nl~~~~e~~~----~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~ 1126 (1263)
..+....++|++.++.+-+|.. .+..+......+..+..+...+...+.+........+..+...+...+....+.
T Consensus 307 ~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~ 386 (557)
T COG0497 307 FALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKA 386 (557)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888873 334445566678888888888888888888888888999999999999999999
Q ss_pred hcC-CccEEEEecCCCC-ccccc---ceeeecC-CCcccccccc-CChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCC
Q 000833 1127 ITL-GGDAELELVDSLD-PFSEG---VVFSVRP-PKKSWKNIAN-LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAAL 1199 (1263)
Q Consensus 1127 l~~-~~~~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~~~~~~-lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~l 1199 (1263)
|.| ++.+.+.+..... |...| |.|.+++ ||.+.+|+.. .||||.||++||+..++....+.|.+||||||+|+
T Consensus 387 L~Me~a~F~ve~~~~~~~~t~~G~d~VeF~istNpG~~~~PL~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GI 466 (557)
T COG0497 387 LAMEKARFTVELKPLEESPTADGADKVEFLISTNPGEPLKPLAKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGI 466 (557)
T ss_pred cCCCCceEEEEeccCCCCCCcCCcceEEEEEeCCCCCCCccHHhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCC
Confidence 887 4677777755322 34555 8999987 7888888864 69999999999999999998889999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecCC
Q 000833 1200 DFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDN 1244 (1263)
Q Consensus 1200 d~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~~ 1244 (1263)
.+..+..|++.|+.++.++|||||||.|+++++||+||.|.|...
T Consensus 467 sG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K~~~ 511 (557)
T COG0497 467 SGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLVEKESE 511 (557)
T ss_pred ChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEEEEecC
Confidence 999999999999999999999999999999999999999999754
No 25
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.94 E-value=2.1e-18 Score=233.33 Aligned_cols=816 Identities=15% Similarity=0.189 Sum_probs=377.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 249 CVSVLDVKNEAEAYMLKELSLLKWQEKATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMR 328 (1263)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 328 (1263)
+..+..+...+++|.++..++..+...+....+......+..+...+..+...+......+..+..++..+...+..+..
T Consensus 193 ~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 272 (1164)
T TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999888888888777777777676777777777777777776666666666666666666666665
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhh
Q 000833 329 RQEELDNDLRVSK-EEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLF 407 (1263)
Q Consensus 329 ~~~~l~~~l~~~~-~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 407 (1263)
.+..+...+..+. ..+..+..++..+..++..+...+..+..++..+...+..+...+..+..++..+...+..+...+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 352 (1164)
T TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352 (1164)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544 444456666666666666666666666666666666666666666555555555555555554443
Q ss_pred hHHHHHhhhhccccchhhhhhhhHhHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 408 ENVFIADTQNIITFPFMNMINLCVETERYRSELATVRAELEPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQR 487 (1263)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 487 (1263)
.. +.. . ...+..........+.............+..+...+..+..++..+...+..+..++..+..
T Consensus 353 ~~--~~~----~------l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~ 420 (1164)
T TIGR02169 353 DK--LTE----E------YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420 (1164)
T ss_pred HH--HHH----H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 000 0 11122222333333333333333333334444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 000833 488 QMDDILRRIDTKTTAIRNMQGDLEKNKLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQGSVLKAILQ 567 (1263)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 567 (1263)
.+..+...+..+...+..+...+..+...+..+...+..+......+...+..+...+..+...+.........+.....
T Consensus 421 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~ 500 (1164)
T TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444333222222221111
Q ss_pred HHhcCCCCcc-ee--ecccccccChhHHHHHHHhcCCCCeEEEcchHHHHHHHHHHHhcCCCceeEEeccccccc---cc
Q 000833 568 AKESNQIEGI-YG--RMGDLGAIDAKYDIAVSTACPGLDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDL---FP 641 (1263)
Q Consensus 568 ~~~~~~~~g~-~g--~l~~l~~~~~~~~~aie~~lg~L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~---~~ 641 (1263)
.. .+. .+ .+..+. ...+..+.|.+ +-.+..++.+..+++..-...+ .+++++..... ..
T Consensus 501 ~~-----~~~~~~~~~i~~~~------~~~~~g~~g~l-~dli~v~~~y~~Aie~~lg~~l---~~ivv~~~~~a~~~i~ 565 (1164)
T TIGR02169 501 AS-----EERVRGGRAVEEVL------KASIQGVHGTV-AQLGSVGERYATAIEVAAGNRL---NNVVVEDDAVAKEAIE 565 (1164)
T ss_pred Hh-----hccccchHHHHHHH------hcCCCCceecH-HHhcCcCHHHHHHHHHHhhhhh---CCEEECCHHHHHHHHH
Confidence 10 111 00 000000 00000112221 1123335777778877665433 33444442211 11
Q ss_pred ccccCCCCCCccccccccccc---Cch--hHHHHHHHHhcCeEEecChHHHHHHHhcCCCCcceEE-ee--------CCc
Q 000833 642 KMKEHFSTPENVPRLFDLIKV---KDE--RMKLAFYAAMGNTLVAKDLDQATRIAYSGNKEFRRVV-TL--------DGA 707 (1263)
Q Consensus 642 ~~~~~~~~~~~~~~l~d~i~~---~~~--~~~~~~~~~l~~~lv~~~~e~a~~~~~~~~~~~~~~v-Tl--------dG~ 707 (1263)
+....-.+..++.|+ +.+.. +.+ ...+.+..++..+-+.+.+..+...+++. ..+| ++ ...
T Consensus 566 ~l~~~~~gr~tflpl-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg~----~~v~~~l~~a~~~~~~~~ 640 (1164)
T TIGR02169 566 LLKRRKAGRATFLPL-NKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGD----TLVVEDIEAARRLMGKYR 640 (1164)
T ss_pred HHHhcCCCCeeeccH-hhcCCCCCCcccccCCCchHHHHHHccCcHHHHHHHHHHCCC----eEEEcCHHHHHHHhcCCc
Confidence 111111222233333 22210 000 00011111111111233456666555542 1222 22 224
Q ss_pred eeecCccccCCCCCCCCCCCCccCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 708 LFEKSGTMSGGGSKPRGGKMGTSIRPTSVSAEAIINA--EKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAK 785 (1263)
Q Consensus 708 ~i~~~G~i~Gg~~~~~~~~i~~~~~~~~~~~~~i~~l--~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~ 785 (1263)
+|+..|.+..+++...+|... . . ...+... ..++..+..++..+...+..+...+..+...+..+...+..
T Consensus 641 ~vTldG~~~~~~G~~tgG~~~--~--~---~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~ 713 (1164)
T TIGR02169 641 MVTLEGELFEKSGAMTGGSRA--P--R---GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD 713 (1164)
T ss_pred EEEeCceeEcCCcCccCCCCC--C--C---CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888764322222233211 0 0 0011111 46677777777777777777777777777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHH
Q 000833 786 SRKEIESLKSQHSYLEKQLDSLKAASEPRKDEIDRLEELQKIISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKLK 865 (1263)
Q Consensus 786 ~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l~ 865 (1263)
+...+..+...+..++..+..+.. ++..+...+..+..++..+...+..+...+..+...+..+. .++.
T Consensus 714 ~~~~~~~l~~~l~~~~~~l~~~~~----------~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~-~el~ 782 (1164)
T TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKE----------RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLE-EALN 782 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 666666666666555555554443 23333333333333344333333333333333333322221 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000833 866 AQKLKVDKIQSDIDKSSTEINRHKVQIETAQKMIKKLTKGIAESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQ 945 (1263)
Q Consensus 866 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~le~~l~~~~~~l~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~ 945 (1263)
.+...+.. ..+..+...+..+...+..+...+..+...+..+...+..+..++..+...+..+...+..+...+..+.
T Consensus 783 ~l~~~~~~--~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~ 860 (1164)
T TIGR02169 783 DLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN 860 (1164)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111100 0111122233334444444444444444444444444444444444454444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCCh
Q 000833 946 KLIDQHRDVLDKAKNDYEKLKKTVDELRASEIEADYKLQDLKRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDP 1025 (1263)
Q Consensus 946 ~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 1025 (1263)
..+..+...+..+...+..+...+..+......+...+..+...+..+...+..+...+..+...+.. +.
T Consensus 861 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~----~~------ 930 (1164)
T TIGR02169 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA----LE------ 930 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH------
Confidence 44444444444444444444444444444444444444444433333333333333333222211110 00
Q ss_pred hhHHhhhhhhhhhchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1026 EKLQATLADQTLSDACDLKRTLEMVALLEAQLKELNPNLDSITEYR-RKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKK 1104 (1263)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~i~~l~~nl~~~~e~~-~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~ 1104 (1263)
.....+. ...............+..+...+..+...+..++..+ .++..|.....++.++..+.+++......+...
T Consensus 931 -~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~ 1008 (1164)
T TIGR02169 931 -EELSEIE-DPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008 (1164)
T ss_pred -HHHHHhh-hhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0000000000001123455666666655555555555 678899999999999999999998888777765
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhc
Q 000833 1105 RLDEF---MAGFNAISLKLKEMYQMIT 1128 (1263)
Q Consensus 1105 ~~~~f---~~~~~~~~~~~~~~~~~l~ 1128 (1263)
+...- ...|...-..+...|..+|
T Consensus 1009 i~~l~~~~~~~f~~~f~~~~~~f~~~~ 1035 (1164)
T TIGR02169 1009 IEEYEKKKREVFMEAFEAINENFNEIF 1035 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 2333333334444444443
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.93 E-value=2.5e-17 Score=215.40 Aligned_cols=350 Identities=19% Similarity=0.306 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q 000833 747 ELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLKAASEPRKDEIDRLEELQK 826 (1263)
Q Consensus 747 el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~l~~ 826 (1263)
++..+..++..+...+.....++......+..+...+..++..+..+...+..+...+..+.. +...+..
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 737 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE----------ELEQLQS 737 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 677788888888887777777777777777777777777666666666666555555444332 3344444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 827 IISAEEKEIEKIVNGSKDLKEKALQLQSKVENAGGEKLKAQKLKVDKIQSDIDKSSTEINRHKVQIETAQKMIKKLTKGI 906 (1263)
Q Consensus 827 ~i~~~~~ei~~l~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~le~~l~~~~~~l 906 (1263)
.+..+..++..+...+..+...+..+...+... ......+...+..+..........+..++..+......+
T Consensus 738 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1163)
T COG1196 738 RLEELEEELEELEEELEELQERLEELEEELESL--------EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL 809 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443322 222233444444444333333444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 907 AESKKEKEQLVEERVKMERIFDEILEKAHNVQEHYTNTQKLIDQHRDVLDKAKNDYEKLKKTVDELRASEIEADYKLQDL 986 (1263)
Q Consensus 907 ~~l~~~~~~~~~el~~l~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 986 (1263)
..+..++.......+.+..++..+......+...+..+...+......+..+...+..+......+.............+
T Consensus 810 ~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l 889 (1163)
T COG1196 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555666666666666665555555555555555555555555555555555555554444444444444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhccCChhhHHhhhhhhhhhchhhHHHHHHHH----H-HHHHHHHHcC
Q 000833 987 KRSYKELEMRGKGYKKRLDDLQITLLKHLEQIQKDLVDPEKLQATLADQTLSDACDLKRTLEMV----A-LLEAQLKELN 1061 (1263)
Q Consensus 987 ~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i----~-~l~~~i~~l~ 1061 (1263)
...+..+...+..+......+...+... . .....+. ..+. .....+.... . .++..+..+.
T Consensus 890 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l----~-------~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~i~~le 955 (1163)
T COG1196 890 EEELRELESELAELKEEIEKLRERLEEL----E-------AKLERLE-VELP--ELEEELEEEYEDTLETELEREIERLE 955 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHH-HHHH--HHHhhhccccccchhHHHHHHHHHHH
Confidence 4444444444443333333322111100 0 0000000 0000 0011111110 1 4556666665
Q ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Q 000833 1062 PNLDSITEYR-RKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRL---DEFMAGFNAISLKLKEMYQMIT 1128 (1263)
Q Consensus 1062 ~nl~~~~e~~-~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~---~~f~~~~~~~~~~~~~~~~~l~ 1128 (1263)
..+..++.++ .++++|+...++++++..+..++......+...+. ......|...-..+..-|+.+|
T Consensus 956 ~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if 1026 (1163)
T COG1196 956 EEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIF 1026 (1163)
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666 78999999999999999999999887777766443 3334445544444455555554
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.93 E-value=6.8e-23 Score=252.07 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=121.0
Q ss_pred ceEEEEEEecCccccCCCc-ccccCC-CcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCce
Q 000833 19 RLFIKEMVMRNFKSYAGEQ-RVGPFH-KSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSA 96 (1263)
Q Consensus 19 ~m~i~~l~l~nFks~~~~~-~~~~~~-~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a 96 (1263)
||+|++|+|+||+||++.+ .| +|+ +|+|+|+|||||||||||+||+|+||+++. |+....+++... +...+
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i-~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~--~~~~~~~~~~~~----~~~~~ 73 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEI-QLDKVKKTLITGKNGAGKSTMLEALTFALFGKPF--RDIKKGQLINSI----NKKDL 73 (562)
T ss_pred CceEEEEEEEcccccCCCceEE-EEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCc--CcCCHHHhhccC----CCCcE
Confidence 6899999999999999853 34 676 599999999999999999999999865322 222223444321 14568
Q ss_pred EEEEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCccc----CHHHHHHHHHhCCCCCCCCcc----ccchh
Q 000833 97 GVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPS----NFTEVTKKLKGKGVDLDNNRF----LILQG 168 (1263)
Q Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~----~~~~~~~~~~~~~i~~~~~~~----~i~qg 168 (1263)
.|+++|.. ++..+.|.|.+. .+...+++||.++ +.+++...+.. .++++...| +++||
T Consensus 74 ~v~l~f~~------------~~~~y~i~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~g~~~~~f~~~v~l~q~ 139 (562)
T PHA02562 74 LVELWFEY------------GEKEYYIKRGIK-PNVFEIYCNGKLLDESASSKDFQKYFEQ-MLGMNYKSFKQIVVLGTA 139 (562)
T ss_pred EEEEEEEE------------CCEEEEEEEecc-CCeEEEecCCEEEeccccHHHHHHHHHH-HHCCCHHHHhHHheeccC
Confidence 89999931 345788888773 4456667798874 45677777766 333333333 48899
Q ss_pred hHHHHHhcCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000833 169 EVEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLF 216 (1263)
Q Consensus 169 ~v~~~~~~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~ 216 (1263)
.+..+..++|. +++.+|++++|+..|..-.......+..+.
T Consensus 140 ~f~~f~~~~~~-------er~~il~~l~~~~~~~~~~~~~k~~~~e~~ 180 (562)
T PHA02562 140 GYVPFMQLSAP-------ARRKLVEDLLDISVLSEMDKLNKDKIRELN 180 (562)
T ss_pred chhhHhcCChH-------hHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999888886 479999999999988775444444444444
No 28
>PF13514 AAA_27: AAA domain
Probab=99.92 E-value=2.2e-16 Score=206.40 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccC-----CCC
Q 000833 1113 FNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHY-----KPT 1187 (1263)
Q Consensus 1113 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~-----~~~ 1187 (1263)
...+-..++.+|..|+.|....+.+.... .+..+.+..++....++..||+|-+=-+-||+.||+... .|.
T Consensus 978 ~p~vl~~As~~f~~LT~G~Y~~l~~d~d~----~~~~l~~~~~~G~~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~l 1053 (1111)
T PF13514_consen 978 QPPVLARASEYFSRLTGGRYSRLRVDEDG----DKPVLVVVRADGERVPVEELSRGTRDQLYLALRLALAELLAEQGEPL 1053 (1111)
T ss_pred hHHHHHHHHHHHHHHhCCCCceeeecccc----CcccceEEecCCeEeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34566778899999998766556553311 111233333334456889999999999999999996543 344
Q ss_pred CeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhccee
Q 000833 1188 PLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRL 1236 (1263)
Q Consensus 1188 p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~ 1236 (1263)
| +|||+|+++.|+.-...++++|.+++..+|||+.||++.++.+|..+
T Consensus 1054 P-~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~~a~~~ 1101 (1111)
T PF13514_consen 1054 P-FILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVELAREV 1101 (1111)
T ss_pred c-EEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHHHHHHh
Confidence 5 55699999999999999999999999999999999999999877665
No 29
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.4e-22 Score=228.46 Aligned_cols=317 Identities=20% Similarity=0.269 Sum_probs=215.7
Q ss_pred EEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEEE
Q 000833 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVSV 100 (1263)
Q Consensus 21 ~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~~ 100 (1263)
||.+|.|+||.-+...++ +|.+|||+|+|.+|+|||.|+|||.+++|++++. ++|++| ...|+|+.
T Consensus 1 ML~~LsIknfaiIe~L~l--eF~~GltVlTGETGAGKSIiidAl~lllG~ra~~-------~~VR~G-----~~~a~v~a 66 (557)
T COG0497 1 MLLELSIKNFAIIEELEL--EFEKGLTVLTGETGAGKSIIIDALGLLLGGRADA-------SLVRHG-----AKRAEVEA 66 (557)
T ss_pred CCcEEeeeheeeeeeeee--eccCCceEEecCCCCcHhHHHHHHHHHhCCCCCc-------chhcCC-----CceeEEEE
Confidence 578999999999999988 8999999999999999999999999999998876 889888 78899999
Q ss_pred EEeeccccCC-----CcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHh
Q 000833 101 HFQEIVDLDD-----GTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISL 175 (1263)
Q Consensus 101 ~~~~~~~~~~-----~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~ 175 (1263)
.|.. ++.+ ......++++++++|.++.+|+|.|||||++|++..+.++-. .++-.+|+.+...+
T Consensus 67 ~F~~--~~~~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~INg~~Vs~~~L~~l~~---------~Li~IHGQh~~q~L 135 (557)
T COG0497 67 IFDL--DNPPARAWLEENGIEDDEEVILRRVISADGRSRAFINGQPVSLAQLKELGQ---------LLIDIHGQHEHQSL 135 (557)
T ss_pred EecC--CchHHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEECCEEeeHHHHHHHHH---------hhheeeccchHHHh
Confidence 9943 1110 001112334899999999999999999999999998888753 45677999999999
Q ss_pred cCCCCCCCCchhHHHHHHHHhhhhh-----hHH---HHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHH
Q 000833 176 MKPKGQGPHDEGFLEYLEDIIGTDR-----YVE---KIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWR 246 (1263)
Q Consensus 176 ~~~~~~~~~~~~~~~~le~~~g~~~-----~~~---~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 246 (1263)
++|.. .+.+|+.++|... |.. .|..+.+++..+.... +...+.+ |++||+ .+
T Consensus 136 l~~~~-------~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d-------~L~fq~-~E---- 196 (557)
T COG0497 136 LKPEL-------QRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRAD-------LLQFQL-EE---- 196 (557)
T ss_pred cChHH-------HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HH----
Confidence 99975 5899999999543 332 3444555555555444 4444444 667777 55
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 247 FVCVSVLDVKNEAEAYMLKELSLLKWQEKATNLAYEDTSLKIV------ELQENVSKLEENLKNEREKIQDNNKTLKELE 320 (1263)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~ 320 (1263)
+..+..+..+.+++.+..+.+.......... ..+-..+. .....+......+. .+...+..+..+.
T Consensus 197 --le~~~l~~gE~e~L~~e~~rLsn~ekl~~~~--~~a~~~L~ge~~~~~~~~~l~~a~~~l~----~~~~~d~~l~~~~ 268 (557)
T COG0497 197 --LEELNLQPGEDEELEEERKRLSNSEKLAEAI--QNALELLSGEDDTVSALSLLGRALEALE----DLSEYDGKLSELA 268 (557)
T ss_pred --HHhcCCCCchHHHHHHHHHHHhhHHHHHHHH--HHHHHHHhCCCCchhHHHHHHHHHHHHH----HhhccChhHHHHH
Confidence 6677777777666666555555554432221 11111111 11222222222221 3445556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000833 321 SVHNKYMRRQEELDNDLRVSKEEFKEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHA 389 (1263)
Q Consensus 321 ~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 389 (1263)
..+.++...+.+...++..+-..+.-....+...++++..+..-.++....++.+-...+.+..++..+
T Consensus 269 ~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L 337 (557)
T COG0497 269 ELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL 337 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 677666666677766777777777666777777777777777666666555555555555444444444
No 30
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.90 E-value=1e-13 Score=181.59 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHHHHhccC--CCCCe---EEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcc--hhHHHhcceeEE
Q 000833 1166 SGGEKTLSSLALVFALHHY--KPTPL---YVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLR--NNMFELADRLVG 1238 (1263)
Q Consensus 1166 SGGek~~~~la~~~a~~~~--~~~p~---~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~--~~~~~~ad~~~~ 1238 (1263)
|-|.=-++.+.+.+|+-.+ ...|| |.+||+ .-|||.|+..|++++.. .+.++|.-+|+ |.+..+-.+.|.
T Consensus 1122 S~G~syLi~~~~~i~l~~~lr~~~~~~ihwpiDEi-G~L~~~Nv~~l~~~~~~--nnI~li~A~P~~~~~vl~lF~~rY~ 1198 (1201)
T PF12128_consen 1122 SHGTSYLILCMFFIALTRMLRGDADFRIHWPIDEI-GKLHPNNVKKLLDMCNS--NNISLISAFPNPDSEVLRLFKNRYI 1198 (1201)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCeEEEeeehhh-ccCChHHHHHHHHHHHh--CCceEEEeCCCCChHHHHHHhhHhh
Confidence 8998888777777775442 23464 349998 56999999999999853 46788888888 466665555555
Q ss_pred EE
Q 000833 1239 IY 1240 (1263)
Q Consensus 1239 v~ 1240 (1263)
|.
T Consensus 1199 i~ 1200 (1201)
T PF12128_consen 1199 IE 1200 (1201)
T ss_pred cc
Confidence 43
No 31
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=7.5e-22 Score=214.19 Aligned_cols=154 Identities=29% Similarity=0.501 Sum_probs=127.2
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcc-hhhhhhhcccccccccccCCCCCceEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLNKVSELIHNSTNYQNLDSAGV 98 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~-~~~~r~~~~~~~i~~g~~~~~~~~a~v 98 (1263)
|+|++|.|.|||||++.+++++|++++++||||||||||||++||+|+||.. ++..|.....++|+.+. ..+...|+|
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~-~~~~~~~~v 79 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRG-QAGITKASV 79 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCC-CCCCcEEEE
Confidence 8999999999999999988778999999999999999999999999999974 55678777778887542 234678999
Q ss_pred EEEEeeccccCCCc-cc--ccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHh
Q 000833 99 SVHFQEIVDLDDGT-YE--AIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISL 175 (1263)
Q Consensus 99 ~~~~~~~~~~~~~~-~~--~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~ 175 (1263)
.++|++. +.. ++ ......++|.|.+...+.+.|++|++.+..+++.+++..+|+.+++++|+|.||+|+.++.
T Consensus 80 ~~~fq~~----~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 80 TIVFDNS----DKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEEcC----CcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 9999642 111 11 0123478999999777767788999888889999999999999999999999999999997
Q ss_pred cCC
Q 000833 176 MKP 178 (1263)
Q Consensus 176 ~~~ 178 (1263)
+.+
T Consensus 156 ~~~ 158 (251)
T cd03273 156 MGG 158 (251)
T ss_pred hHH
Confidence 754
No 32
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.87 E-value=1.8e-12 Score=144.87 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=63.6
Q ss_pred ccCChhHHHHHHHHHHHHhccC--------CCC-CeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH---
Q 000833 1163 ANLSGGEKTLSSLALVFALHHY--------KPT-PLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF--- 1230 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~--------~~~-p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~--- 1230 (1263)
..+||||+..++.-.+-|...| .|. .|+||||.+.-=|+..+..++..++++ +.|.+|||+...+-
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f--glh~v~iTPlk~I~~l~ 1066 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF--GLHAVFITPLKEIRLLR 1066 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc--CceEEEechHHHHHHHH
Confidence 3579999988765433332222 121 289999999999999999999988776 58999999996553
Q ss_pred HhcceeEEEEec-CCCceeEEecCCccc
Q 000833 1231 ELADRLVGIYKT-DNCTKSITINPGSFT 1257 (1263)
Q Consensus 1231 ~~ad~~~~v~~~-~~~s~~~~~~~~~~~ 1257 (1263)
.+....+.|+.. ...|.-+++.-+.|.
T Consensus 1067 ~~v~S~ivVh~~~gpdsql~~ls~e~~~ 1094 (1104)
T COG4913 1067 HHVRSAIVVHRREGPDSQLVSLSWEDLN 1094 (1104)
T ss_pred hhccceEEEecCCCCcchheeccHHHHH
Confidence 345566677754 334445555545543
No 33
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=5e-21 Score=206.68 Aligned_cols=146 Identities=33% Similarity=0.623 Sum_probs=122.4
Q ss_pred EEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhccccccccccc-CCCCCceEEEE
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTN-YQNLDSAGVSV 100 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~-~~~~~~a~v~~ 100 (1263)
|++|.|.|||||.+.+.|+ |.+++++|+||||||||||++||+|++|.++...|+....++|+.|.. ..+...+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~-~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIG-PFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeec-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEE
Confidence 5789999999999876674 456899999999999999999999999987777888888899988742 33456899999
Q ss_pred EEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCCCC
Q 000833 101 HFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKG 180 (1263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~~~ 180 (1263)
+|.. . .+...++.|.+ ..+.+.|++||++++..++.+++..+|++++.+++++.||+|..++.++|..
T Consensus 80 ~f~~----~-------~~~~~~~~~~~-~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~ 147 (247)
T cd03275 80 VYED----D-------DGEEKTFRRII-TGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPG 147 (247)
T ss_pred EEEc----C-------CCcEEEEEEEE-ECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcc
Confidence 9942 1 12245566666 6778889999999999999999999999999988999999999999999853
No 34
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=7.1e-11 Score=136.21 Aligned_cols=108 Identities=23% Similarity=0.247 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhcc----CCCCCeEE
Q 000833 1116 ISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH----YKPTPLYV 1191 (1263)
Q Consensus 1116 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~----~~~~p~~i 1191 (1263)
+-....++|..++.|....+......+ .+.|.........+..||-|-+=..=+|+.||+.. ..|-||+
T Consensus 859 vi~~A~~~F~hlT~G~Yt~Iy~~e~~d------~I~V~~~~G~~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP~i- 931 (984)
T COG4717 859 VIQEASEFFMHLTDGRYTGIYTQEDKD------SIIVEHRAGGSKLAEELSQGTKEQLYLALRFALIHEVRTREPLPFI- 931 (984)
T ss_pred HHHHHHHHHhhccCCceeeeecccCCc------eeEEEecccccccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCCee-
Confidence 334466788888876555554432212 34444434444567789999999999999999654 3455654
Q ss_pred eecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH
Q 000833 1192 MDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF 1230 (1263)
Q Consensus 1192 lDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~ 1230 (1263)
+|.++...|+.-..+++.+|++++.+.|+|..||++.+-
T Consensus 932 ~DD~fVhFD~~R~~r~~e~l~dls~~~QviYFTCHe~~~ 970 (984)
T COG4717 932 ADDIFVHFDDERAKRMLELLADLSEGNQVIYFTCHEHTC 970 (984)
T ss_pred eccchhccCHHHHHHHHHHHHHhccCCeEEEEEechhhh
Confidence 599999999999999999999999999999999998763
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=9.5e-11 Score=139.28 Aligned_cols=63 Identities=16% Similarity=0.277 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 746 KELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLK 808 (1263)
Q Consensus 746 ~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~ 808 (1263)
...+.++.++.............+-.+.+.+..+...+..++..+..+...+..+-...+.+.
T Consensus 778 ~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~ 840 (1293)
T KOG0996|consen 778 ESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLE 840 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777766666666666666666666666666666666555555555444444443
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.81 E-value=1.4e-16 Score=196.33 Aligned_cols=100 Identities=23% Similarity=0.259 Sum_probs=81.9
Q ss_pred eeeecCCCccccccccCChhHHHHHHHHHHHHhcc------CCCCCeEEeecCc-CCCCHHHHHHHHHHHHHhcCCCeEE
Q 000833 1149 VFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH------YKPTPLYVMDEID-AALDFKNVSIVGHYVKDRTKDAQFI 1221 (1263)
Q Consensus 1149 ~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~------~~~~p~~ilDE~d-~~ld~~~~~~~~~~l~~~~~~~q~i 1221 (1263)
...+...|....++..|||||+++++||++|++.. ..+||++|||||+ ++||+..+..+..+|..+ .+.++|
T Consensus 453 ~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~ii 531 (562)
T PHA02562 453 NETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVF 531 (562)
T ss_pred hhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEE
Confidence 33444445444577899999999999999987411 1468999999997 789999999999999988 678999
Q ss_pred EEEcchhHHHhcceeEEEEecCCCceeE
Q 000833 1222 IISLRNNMFELADRLVGIYKTDNCTKSI 1249 (1263)
Q Consensus 1222 ~ith~~~~~~~ad~~~~v~~~~~~s~~~ 1249 (1263)
+|||++.+...||+++.|.+..+.|+++
T Consensus 532 iish~~~~~~~~d~~~~l~~~~~~~~~~ 559 (562)
T PHA02562 532 VISHKDHDPQKFDRHLKMEKVGRFSVMV 559 (562)
T ss_pred EEECchhchhhhhcEEEEEEECCeeEEe
Confidence 9999998889999999999876665543
No 37
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2e-19 Score=197.38 Aligned_cols=139 Identities=24% Similarity=0.428 Sum_probs=111.4
Q ss_pred EEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEEEE
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVSVH 101 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~~~ 101 (1263)
|.+|.|+||+||.+..+ +|++|+|+|+||||||||||++||+|++|.+.. .++++.| .+.+.|.++
T Consensus 1 l~~l~i~nf~~~~~~~i--~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~~-------~~~~~~~-----~~~~~v~~~ 66 (276)
T cd03241 1 LLELSIKNFALIEELEL--DFEEGLTVLTGETGAGKSILLDALSLLLGGRAS-------ADLIRSG-----AEKAVVEGV 66 (276)
T ss_pred CcEEEEeCccceeeeEE--EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCCh-------HHHhhCC-----CCeEEEEEE
Confidence 57899999999988766 889999999999999999999999999997632 3677666 667889999
Q ss_pred EeeccccCCCcc--------cccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHH
Q 000833 102 FQEIVDLDDGTY--------EAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 173 (1263)
Q Consensus 102 ~~~~~~~~~~~~--------~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~ 173 (1263)
|.+ ..... ...++.+++|+|.++.+|.+.|+|||++++++++.++.. .++..||+++.+
T Consensus 67 ~~~----~~~~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~Ing~~vsl~~l~~i~~---------~li~i~gq~~~~ 133 (276)
T cd03241 67 FDI----SDEEEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELGS---------LLVDIHGQHDHQ 133 (276)
T ss_pred Eec----CCchHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEECCEEECHHHHHHHHH---------hheEEECcHHHH
Confidence 943 11110 012346899999999999999999999999999988862 456778999888
Q ss_pred HhcCCCCCCCCchhHHHHHHH
Q 000833 174 SLMKPKGQGPHDEGFLEYLED 194 (1263)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~le~ 194 (1263)
..++|.. ++++|++
T Consensus 134 ~l~~~~~-------~~~lLD~ 147 (276)
T cd03241 134 NLLNPER-------QLDLLDG 147 (276)
T ss_pred HhcChHH-------hHhhhhC
Confidence 8888853 5778877
No 38
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.6e-10 Score=129.74 Aligned_cols=251 Identities=13% Similarity=0.184 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHH
Q 000833 291 LQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQEELDNDLRVSKEEFKEFERQDVKYRED-------SKHMKQ 363 (1263)
Q Consensus 291 ~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~-------l~~~~~ 363 (1263)
+..++.....++..+.........+-......+.....+...+..++.++...+..+..+..+++.+ .-.+.-
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344444444444444444333333333333333343444444444444444443333333333332 222333
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhH-HHHHhhhhccccchhhhhhhhHhHHHHHHHHHH
Q 000833 364 KIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFEN-VFIADTQNIITFPFMNMINLCVETERYRSELAT 442 (1263)
Q Consensus 364 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1263)
.+..++.++.............+..+...+.+.+.++..+...++. ..-+. ....++..+++....
T Consensus 308 ~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~-------------~~~~rl~~l~~~~~~ 374 (1200)
T KOG0964|consen 308 KIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEK-------------RLKKRLAKLEQKQRD 374 (1200)
T ss_pred hhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHH-------------HHHHHHHHHHHHHHH
Confidence 4444445555544444445555555555555555555555555544 11000 011112222221111
Q ss_pred HHHh---h---hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000833 443 VRAE---L---EPWEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQMDDILRRIDTKTTAIRNMQGDLEKNKLE 516 (1263)
Q Consensus 443 ~~~~---~---~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 516 (1263)
+-.+ . .+....-.=+...+..+..-+.........+..++..++.++.....++..+...+.+...+++..-..
T Consensus 375 l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~ 454 (1200)
T KOG0964|consen 375 LLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAE 454 (1200)
T ss_pred HHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Confidence 1111 0 111111112445555566666666666666777777777777776666777777777777777777777
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 000833 517 AMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDS 554 (1263)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 554 (1263)
...+.....++......++++-..++..+..+...+..
T Consensus 455 ~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 455 NTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777788888777777777777766654
No 39
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=4.6e-18 Score=184.65 Aligned_cols=150 Identities=27% Similarity=0.496 Sum_probs=120.9
Q ss_pred EEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEEEE
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVSVH 101 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~~~ 101 (1263)
|++|+|+|||||.+...+++|++++++|+||||||||||++||+|++|...+.+|.....++|+.|.+.. ...++|+++
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~-~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPS-VMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCC-CceEEEEEE
Confidence 6789999999999988888999999999999999999999999999997555577777778998875432 357899999
Q ss_pred EeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCC
Q 000833 102 FQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178 (1263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~ 178 (1263)
|.+ .+..+. ....++.+.|.+. .....|++++..++..++...+..+|+...++++++.||.+..+..+.+
T Consensus 80 ~~~----~~~~~~-~~~~~~~i~r~ig-~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~ 150 (243)
T cd03272 80 FDN----SDNRFP-IDKEEVRLRRTIG-LKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQ 150 (243)
T ss_pred EEc----CCCccC-CCCCEEEEEEEEE-CCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccc
Confidence 943 222222 2335788888774 3457899999988999999999999998887777889999999887754
No 40
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.7e-18 Score=186.64 Aligned_cols=152 Identities=20% Similarity=0.345 Sum_probs=115.7
Q ss_pred EEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEEEE
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVSVH 101 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~~~ 101 (1263)
|++|.|+||++|.+.++ +|++|+|+|+||||||||||++||.|++|.++ .|.....++|+.| ...|.|+++
T Consensus 1 l~~l~i~nfr~~~~~~~--~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~--~r~~~~~~~i~~~-----~~~~~v~~~ 71 (270)
T cd03242 1 LKSLELRNFRNYAELEL--EFEPGVTVLVGENAQGKTNLLEAISLLATGKS--HRTSRDKELIRWG-----AEEAKISAV 71 (270)
T ss_pred CcEEEEeCCcCcceeEE--ecCCCeEEEECCCCCCHHHHHHHHHHhccCCC--CCCCCHHHHHhcC-----CCCEEEEEE
Confidence 57899999999998765 89999999999999999999999999998643 4555667889887 678999999
Q ss_pred EeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCH-HHHHHHHHhCCCCCCCCccccchhhHHHHHhcCCCC
Q 000833 102 FQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNF-TEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKG 180 (1263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~-~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~~~ 180 (1263)
|.+ + +..+.++|.++.++++.|+|||.+++. .++...+ ..+..|++...++.++|.
T Consensus 72 f~~----~--------~~~~~i~~~~~~~~~~~~~ing~~~~~l~~l~~~l----------~~i~~~~~~~~l~~~~p~- 128 (270)
T cd03242 72 LER----Q--------GGELALELTIRSGGGRKARLNGIKVRRLSDLLGVL----------NAVWFAPEDLELVKGSPA- 128 (270)
T ss_pred EEe----C--------CCeEEEEEEEEcCCceEEEECCeeccCHHHHhCcC----------cEEEEecchhhhhcCCHH-
Confidence 932 1 224778898877888999999999875 5544432 235566777778878886
Q ss_pred CCCCchhHHHHHHHHhhh--hhhHHHHHHHHHH
Q 000833 181 QGPHDEGFLEYLEDIIGT--DRYVEKIDESYKD 211 (1263)
Q Consensus 181 ~~~~~~~~~~~le~~~g~--~~~~~~~~~~~~~ 211 (1263)
.++.+|+.+++. ..|...+.+..+-
T Consensus 129 ------~rr~~lD~~~~~~~~~y~~~~~~~~~~ 155 (270)
T cd03242 129 ------DRRRFLDRLLGQLEPAYAHVLSEYQKA 155 (270)
T ss_pred ------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 479999999983 2344444443333
No 41
>PRK00064 recF recombination protein F; Reviewed
Probab=99.74 E-value=1.9e-17 Score=187.85 Aligned_cols=140 Identities=19% Similarity=0.355 Sum_probs=115.7
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|.+|.|.||++|.+.++ +|++|+|+|+||||||||||++||.++++++ +.|.....++|+.| ...+.|.
T Consensus 1 M~i~~l~i~nfr~~~~~~l--~~~~~~~~i~G~NgsGKT~lleai~~l~~~~--s~r~~~~~~li~~g-----~~~~~v~ 71 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDL--ELSPGVNVLVGENGQGKTNLLEAIYLLAPGR--SHRTARDKELIRFG-----AEAAVIH 71 (361)
T ss_pred CEEEEEEEeCCCcccceEE--EecCCeEEEECCCCCCHHHHHHHHHHhCCCC--CccCCChhHHHhcC-----CCcEEEE
Confidence 8999999999999998766 7888999999999999999999999987653 35777788999887 6679999
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCccc-CHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCC
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPS-NFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~-~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~ 178 (1263)
++|.+ ++..+.|.|.+..+|.+.|+|||+++ +..++..++ ..++++++...++...|
T Consensus 72 ~~~~~------------~~~~~~i~~~~~~~~~~~~~ing~~~~~~~~l~~~~----------~~v~~~p~~~~l~~~~p 129 (361)
T PRK00064 72 GRVEK------------GGRELPLGLEIDKKGGRKVRINGEPQRKLAELAGLL----------NVVLFTPEDLRLVKGGP 129 (361)
T ss_pred EEEEe------------CCcEEEEEEEEEcCCceEEEECCccccCHHHHhhhc----------cEEEEccchhhhhcCCH
Confidence 99931 12356788887777778899999999 778887775 24566777778999999
Q ss_pred CCCCCCchhHHHHHHHHhh
Q 000833 179 KGQGPHDEGFLEYLEDIIG 197 (1263)
Q Consensus 179 ~~~~~~~~~~~~~le~~~g 197 (1263)
. .+|.+|+.+++
T Consensus 130 ~-------~RR~fLD~~~~ 141 (361)
T PRK00064 130 S-------ERRRFLDRLLF 141 (361)
T ss_pred H-------HHHHHHHHHHh
Confidence 7 47999999988
No 42
>PRK14079 recF recombination protein F; Provisional
Probab=99.72 E-value=6.9e-17 Score=182.01 Aligned_cols=155 Identities=17% Similarity=0.278 Sum_probs=114.3
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|.+|.|.||++|.+.++ +|++|+|+|+||||||||||++||+|++|+ +.|+....++|+.| ...++|.
T Consensus 1 M~i~~l~l~nfRn~~~~~l--~f~~g~nvi~G~NGsGKT~lLeAI~~~~~g---s~r~~~~~~lI~~g-----~~~~~v~ 70 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTL--AFPPGVTAVVGENAAGKTNLLEAIYLALTG---ELPNGRLADLVRFG-----EGEAWVH 70 (349)
T ss_pred CEEEEEEEeccCCcccceE--EeCCCeEEEECCCCCCHHHHHHHHHHHhcC---CCCCCcHHhheecC-----CCcEEEE
Confidence 8999999999999999876 888999999999999999999999999886 35677778999988 5678899
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCCC
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 179 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~~ 179 (1263)
+.|.. . +....+...+ ..+++.|+|||++++..++..++ |+.++.|++..- +..+|.
T Consensus 71 ~~~~~----~--------~~~~~~~~~~-~~~~~~~~ing~~~~~~~l~~~~---------~~v~~~p~d~~l-i~~~p~ 127 (349)
T PRK14079 71 AEVET----G--------GGLSRLEVGL-GPGRRELKLDGVRVSLRELARLP---------GAVLIRPEDLEL-VLGPPE 127 (349)
T ss_pred EEEEe----C--------CCeEEEEEEE-EcCceEEEECCeecCHHHHHhhh---------cEEEEecCchHh-hhCCHH
Confidence 88832 1 1122233333 33457899999999988887765 344566777643 345775
Q ss_pred CCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000833 180 GQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLF 216 (1263)
Q Consensus 180 ~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~ 216 (1263)
.+|.+|+.+++ .+...+......+.++.
T Consensus 128 -------~RR~fLD~~l~--~l~~~y~~~l~~y~k~l 155 (349)
T PRK14079 128 -------GRRAYLDRLLS--RLSARYAALLSAYERAV 155 (349)
T ss_pred -------HHHHHHHHHHH--hcCHHHHHHHHHHHHHH
Confidence 47999999887 33444444444444443
No 43
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.72 E-value=5.1e-13 Score=164.77 Aligned_cols=166 Identities=21% Similarity=0.345 Sum_probs=96.4
Q ss_pred eEEEEEEecCccccCCCcccccCC----CcceEEEcCCCCChhHHHHHHHHHcCc-chh-hhhhhc-----ccccccccc
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFH----KSFSAVVGPNGSGKSNVIDAMLFVFGK-RAK-QMRLNK-----VSELIHNST 88 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~----~~~~~i~G~nGsGKS~i~~ai~~~lg~-~~~-~~r~~~-----~~~~i~~g~ 88 (1263)
|+|++|.|.||++|.+.+.+ +|. .++++|+|||||||||+++||.|+|.+ .+. ..|+.. +..+++.+.
T Consensus 1 M~i~~l~l~nf~~~~~~~~~-~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~ 79 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTF-DLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQA 79 (650)
T ss_pred CcccEEEEeceEEEcCCcee-eeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccC
Confidence 89999999999999986443 342 469999999999999999999998744 332 234331 223444332
Q ss_pred cCCCCCceEEEEEEeeccccCCCcccccCCceEEEEEEeecC---CCceE--EEcCcccC--HHHHHHHHHhCCCCCCC-
Q 000833 89 NYQNLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRD---NSSKY--YINDRPSN--FTEVTKKLKGKGVDLDN- 160 (1263)
Q Consensus 89 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~---~~~~y--~in~~~~~--~~~~~~~~~~~~i~~~~- 160 (1263)
.+...|+|+++|... .++ ...++.|.|.+..+ ....+ +.+|.+.. .....+++.+ +.+..
T Consensus 80 --~~~~~~~V~l~f~~~----~~~----~~~~y~i~R~w~~~~k~~~~~l~v~~~~~~~~~~~~~~~~~i~~--ilp~~~ 147 (650)
T TIGR03185 80 --GKTNPASITLTFSVV----EGG----KRHEYTLVRSWHINNKDVKEKLTVYKDDEEDDSLNDIWDEFINE--LLPLEL 147 (650)
T ss_pred --CCCCCeEEEEEEEEc----cCC----ceEEEEEEEEecCCCCCCCCcEEEEECCcccchhhHHHHHHHHH--hCCHhH
Confidence 235678999999421 111 12367899987533 22333 34664321 1234444443 21111
Q ss_pred Cccccchhh-HHHHHhcCCCCCCCCchhHHHHHHHHhhhhhhHH
Q 000833 161 NRFLILQGE-VEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVE 203 (1263)
Q Consensus 161 ~~~~i~qg~-v~~~~~~~~~~~~~~~~~~~~~le~~~g~~~~~~ 203 (1263)
..|+.+.|+ |..++...... ..+...+..+.|++.|..
T Consensus 148 ~~~FfFDGE~I~~la~~~~~~-----~~l~~Ai~~LlGl~~~~~ 186 (650)
T TIGR03185 148 ADLFFFDGEKIEALANPDRLA-----SLLKEAIEVLLGLDLIDR 186 (650)
T ss_pred HHHhcccHHHHHHHhccccch-----HHHHHHHHHHhCcHHHHH
Confidence 113455565 66665422111 126666777777776443
No 44
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=1.1e-16 Score=156.15 Aligned_cols=88 Identities=27% Similarity=0.313 Sum_probs=78.8
Q ss_pred ecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH
Q 000833 1152 VRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF 1230 (1263)
Q Consensus 1152 ~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~ 1230 (1263)
|+.+.+....|.+|||||+||||||++||+. |++++|||||++|||.-+..+.+.|++++. +.+.|||||...++
T Consensus 124 VGL~~ka~~yP~qLSGGQqQRVAIARALaM~----P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA 199 (240)
T COG1126 124 VGLADKADAYPAQLSGGQQQRVAIARALAMD----PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA 199 (240)
T ss_pred cCchhhhhhCccccCcHHHHHHHHHHHHcCC----CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence 3344555668899999999999999999998 999999999999999999999999999986 78999999998887
Q ss_pred -HhcceeEEEEecC
Q 000833 1231 -ELADRLVGIYKTD 1243 (1263)
Q Consensus 1231 -~~ad~~~~v~~~~ 1243 (1263)
..|||++.+..|.
T Consensus 200 r~VadrviFmd~G~ 213 (240)
T COG1126 200 REVADRVIFMDQGK 213 (240)
T ss_pred HHhhheEEEeeCCE
Confidence 5899999999883
No 45
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.65 E-value=1.7e-11 Score=151.27 Aligned_cols=108 Identities=15% Similarity=0.253 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHhcCCcc--EEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccCC--CCC
Q 000833 1113 FNAISLKLKEMYQMITLGGD--AELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYK--PTP 1188 (1263)
Q Consensus 1113 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~--~~p 1188 (1263)
...+...+..+|..++.... ..+.+. +. . ..+.+..+.....++..|||||++.++||+++|++... +.|
T Consensus 504 ~~~le~~~~~~f~~l~~k~~~~~~v~id-~~-~----~~~~l~~~~g~~~~~~~lS~Ge~~~~~la~~~al~~~~~~~~p 577 (650)
T TIGR03185 504 LQQLEEEITKSFKKLMRKHNLISRLKID-PE-T----FAVSLYDNNGKHIDKERLSAGERQILAIALLWGLAKVSGRRLP 577 (650)
T ss_pred HHHHHHHHHHHHHHHhcccCceeEEEEc-CC-c----eeEEEEcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45577778888888865322 233332 11 1 22222222334457889999999999999999998754 468
Q ss_pred eEEeecCcCCCCHHHHHHHHH-HHHHhcCCCeEEEEEcchhH
Q 000833 1189 LYVMDEIDAALDFKNVSIVGH-YVKDRTKDAQFIIISLRNNM 1229 (1263)
Q Consensus 1189 ~~ilDE~d~~ld~~~~~~~~~-~l~~~~~~~q~i~ith~~~~ 1229 (1263)
|+ +|+|++.||+.++..++. ++... ..||||+||+.++
T Consensus 578 ~i-iD~p~~~lD~~~r~~l~~~~~~~~--~~QvIils~d~e~ 616 (650)
T TIGR03185 578 VI-IDTPLGRLDSSHRENLVVNYFPKA--SHQVLLLSTDEEV 616 (650)
T ss_pred EE-EcCCccccChHHHHHHHHHHhhcc--CCeEEEEechHhh
Confidence 84 699999999999999885 66554 4799999999544
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.5e-08 Score=115.02 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=8.8
Q ss_pred ecChHHHHHHHhcC
Q 000833 681 AKDLDQATRIAYSG 694 (1263)
Q Consensus 681 ~~~~e~a~~~~~~~ 694 (1263)
.+.+..|...+|++
T Consensus 611 d~~l~~amefvFG~ 624 (1174)
T KOG0933|consen 611 DDELKKAMEFVFGS 624 (1174)
T ss_pred CHHHHHHHHHHhCc
Confidence 44566677777753
No 47
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.3e-08 Score=116.53 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1041 CDLKRTLEMVALLEAQLKELNPNLDSITEYRRKVAAYNERVEDLTTVTQQRDDV 1094 (1263)
Q Consensus 1041 ~~~~~l~~~i~~l~~~i~~l~~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l 1094 (1263)
.++..|...+. |+.++..+...+..+.+...+.++|+... ...+.+..+.+
T Consensus 923 idy~~L~~~y~-L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~--~~~~~~EfE~a 973 (1141)
T KOG0018|consen 923 IDYSGLPREYK-LQQKLEEKQSVLNRIAPNLKALERLDEVR--FQEINEEFEAA 973 (1141)
T ss_pred cccccccHHHH-HHHHHHHHHHHHHHhCcchHHHhhhhhHH--HHHhhHHHHHH
Confidence 35666766665 77777776666666666667777776655 44444444443
No 48
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.60 E-value=3.9e-07 Score=118.82 Aligned_cols=19 Identities=11% Similarity=-0.060 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 000833 201 YVEKIDESYKDYVVLFDLI 219 (1263)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~ 219 (1263)
....+..+..++..+...+
T Consensus 955 ~~~Ek~~~e~~~~~l~~e~ 973 (1930)
T KOG0161|consen 955 LELEKNAAENKLKNLEEEI 973 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555444
No 49
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.60 E-value=2.7e-15 Score=152.55 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=74.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
++|++|||||+||||||++|+.. |++++.||||++||..+...|.++|.++.+ +..+|+|||++.++.+|||++
T Consensus 138 ~~p~eLSGGqqQRVAIARAL~~~----P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i 213 (226)
T COG1136 138 KKPSELSGGQQQRVAIARALINN----PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI 213 (226)
T ss_pred CCchhcCHHHHHHHHHHHHHhcC----CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEE
Confidence 46889999999999999999977 999999999999999999999999999854 689999999999999999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 214 ~l~dG~ 219 (226)
T COG1136 214 ELKDGK 219 (226)
T ss_pred EEeCCe
Confidence 999875
No 50
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.57 E-value=3.4e-15 Score=155.98 Aligned_cols=107 Identities=24% Similarity=0.404 Sum_probs=88.3
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhh-hhhhcccccccccccCCCCCceEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ-MRLNKVSELIHNSTNYQNLDSAGV 98 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~-~r~~~~~~~i~~g~~~~~~~~a~v 98 (1263)
+.|.+|+|.||++|.+..+ .|++|+|+|+|||||||||||+||++++|.+... .|.....++|+.| ...+.|
T Consensus 1 ~~i~~i~i~nfr~~~~~~i--~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g-----~~~~~v 73 (213)
T cd03277 1 GSIVRIKLENFVTYDETEF--RPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRG-----CDEGTI 73 (213)
T ss_pred CeeEEEEEeCCCCcceeEE--ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCC-----CCcEEE
Confidence 4689999999999976544 7888999999999999999999999999875543 4777788899887 677889
Q ss_pred EEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCC
Q 000833 99 SVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178 (1263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~ 178 (1263)
++.|.+ .+ + .+.++|+|+++.||.+..++.|+|
T Consensus 74 ~~~~~~----~~--------------------~-----------------------~~~~~n~~~~~~q~~~~~~~~~~~ 106 (213)
T cd03277 74 EIELYG----NP--------------------G-----------------------NIQVDNLCQFLPQDRVGEFAKLSP 106 (213)
T ss_pred EEEEEe----CC--------------------C-----------------------ccccCCceEEEchHHHHHHHhCCh
Confidence 988832 10 0 077889999999999999999999
Q ss_pred CC
Q 000833 179 KG 180 (1263)
Q Consensus 179 ~~ 180 (1263)
.+
T Consensus 107 ~e 108 (213)
T cd03277 107 IE 108 (213)
T ss_pred Hh
Confidence 64
No 51
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.56 E-value=1.8e-14 Score=137.18 Aligned_cols=117 Identities=36% Similarity=0.553 Sum_probs=100.9
Q ss_pred CcceeecccccccChhHHHHHHHhcCC-CCeEEEcchHHHHHHHHHHHhcCCCceeEEeccccccccccccc-CCCCCCc
Q 000833 575 EGIYGRMGDLGAIDAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLFPKMKE-HFSTPEN 652 (1263)
Q Consensus 575 ~g~~g~l~~l~~~~~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~ 652 (1263)
+|++|++++++.++++|+.||++++|+ ++++||++.+++..|++++++.+.|+++|+|++.+......... ....++.
T Consensus 2 ~gv~G~l~dli~v~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~~ 81 (120)
T PF06470_consen 2 PGVLGRLADLIEVDPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPGG 81 (120)
T ss_dssp TTEEEEGGGSEEESGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTTS
T ss_pred CCeeeeHHhceecCHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCcc
Confidence 589999999999999999999999999 99999999999999999999999999999999987544311000 0002457
Q ss_pred ccccccccccCchhHHHHHHHHhcCeEEecChHHHHHHH
Q 000833 653 VPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIA 691 (1263)
Q Consensus 653 ~~~l~d~i~~~~~~~~~~~~~~l~~~lv~~~~e~a~~~~ 691 (1263)
+.+++|+|.|+++.+.+++.++||++++|+|++.|.+++
T Consensus 82 ~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~la 120 (120)
T PF06470_consen 82 AGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKLA 120 (120)
T ss_dssp EEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHHH
T ss_pred hHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHhC
Confidence 789999999977899999999999999999999998764
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.54 E-value=2.9e-08 Score=119.09 Aligned_cols=96 Identities=27% Similarity=0.416 Sum_probs=78.4
Q ss_pred ceeee-cCCC---ccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEE
Q 000833 1148 VVFSV-RPPK---KSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFI 1221 (1263)
Q Consensus 1148 ~~~~~-~~~~---~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i 1221 (1263)
+.+.+ .|++ ++.+++..|||||||++++|++||+|....+||++|||+|++||..|+...+++|-.++. ..|||
T Consensus 969 l~i~v~~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~I 1048 (1074)
T KOG0250|consen 969 LSISVKLPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFI 1048 (1074)
T ss_pred cchhhccCCCCcccccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEE
Confidence 44555 4432 336788899999999999999999999999999999999999999999999999877652 58999
Q ss_pred EEEcchhHHHhcceeEEEEecC
Q 000833 1222 IISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1222 ~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
||||++.-.-.++..+.|.+..
T Consensus 1049 fiTPqdi~~l~~~~~i~v~rm~ 1070 (1074)
T KOG0250|consen 1049 FITPQDISKLNSDDGIVVFRMS 1070 (1074)
T ss_pred EEccccHhhhccccceEEeecc
Confidence 9999974344455577777653
No 53
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.54 E-value=1.2e-06 Score=114.29 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=5.8
Q ss_pred CCcceEEEcCC
Q 000833 43 HKSFSAVVGPN 53 (1263)
Q Consensus 43 ~~~~~~i~G~n 53 (1263)
+|+|+--|=||
T Consensus 658 ~phFvRCiIPn 668 (1930)
T KOG0161|consen 658 HPHFVRCIIPN 668 (1930)
T ss_pred CCceeEEeccC
Confidence 34565555555
No 54
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.53 E-value=4.5e-14 Score=147.62 Aligned_cols=102 Identities=84% Similarity=1.265 Sum_probs=89.9
Q ss_pred ceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcch
Q 000833 1148 VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRN 1227 (1263)
Q Consensus 1148 ~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~ 1227 (1263)
+...+..++.....+..||||++++++||.++++..+.||+++||||||+|||+..+..+.++|.++.++.++|+|||++
T Consensus 111 ~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~ 190 (212)
T cd03274 111 VEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN 190 (212)
T ss_pred EEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH
Confidence 44445556666667889999999999999999876556789999999999999999999999999988789999999999
Q ss_pred hHHHhcceeEEEEecCCCceeE
Q 000833 1228 NMFELADRLVGIYKTDNCTKSI 1249 (1263)
Q Consensus 1228 ~~~~~ad~~~~v~~~~~~s~~~ 1249 (1263)
.++.+||++++|++.+.+|++|
T Consensus 191 ~~~~~~d~v~~~~~~~~~~~~~ 212 (212)
T cd03274 191 NMFELADRLVGIYKTNNCTKSV 212 (212)
T ss_pred HHHHhCCEEEEEEecCCccccC
Confidence 9999999999999999888754
No 55
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=5.5e-15 Score=154.22 Aligned_cols=87 Identities=26% Similarity=0.279 Sum_probs=77.3
Q ss_pred cCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc-hhH
Q 000833 1153 RPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR-NNM 1229 (1263)
Q Consensus 1153 ~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~-~~~ 1229 (1263)
.......+++..||||||+|+|||-++|+. |.++||||||||||+..+..+.++|+++.. +..+|+|||+ ..+
T Consensus 127 gl~~~~~r~p~~LSGGqkqRvaIA~vLa~~----P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~ 202 (235)
T COG1122 127 GLEELLDRPPFNLSGGQKQRVAIAGVLAMG----PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV 202 (235)
T ss_pred CchhhccCCccccCCcceeeHHhhHHHHcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH
Confidence 334445678999999999999999999998 899999999999999999999999999875 4689999999 566
Q ss_pred HHhcceeEEEEecC
Q 000833 1230 FELADRLVGIYKTD 1243 (1263)
Q Consensus 1230 ~~~ad~~~~v~~~~ 1243 (1263)
..+||+++.+..|.
T Consensus 203 ~~~ad~v~vl~~G~ 216 (235)
T COG1122 203 LEYADRVVVLDDGK 216 (235)
T ss_pred HhhCCEEEEEECCE
Confidence 68899999999875
No 56
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.3e-14 Score=145.25 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=74.5
Q ss_pred ccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhc
Q 000833 1157 KSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELA 1233 (1263)
Q Consensus 1157 ~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~a 1233 (1263)
...+.+++|||||+||+|||++++.. |+++||||||++||..+...|.++|.++.+ +..+|||||+..++ .+|
T Consensus 134 ~l~R~P~eLSGGQ~QRiaIARAL~~~----PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 134 FLDRRPHELSGGQRQRIAIARALIPE----PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred HHhcCchhcChhHHHHHHHHHHhccC----CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 34567889999999999999999977 899999999999999999999999998765 66999999997665 579
Q ss_pred ceeEEEEecC
Q 000833 1234 DRLVGIYKTD 1243 (1263)
Q Consensus 1234 d~~~~v~~~~ 1243 (1263)
||++.+..|.
T Consensus 210 dRi~Vm~~G~ 219 (252)
T COG1124 210 DRIAVMDNGQ 219 (252)
T ss_pred hheeeeeCCe
Confidence 9999999875
No 57
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.8e-14 Score=148.62 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=81.9
Q ss_pred ceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEc
Q 000833 1148 VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISL 1225 (1263)
Q Consensus 1148 ~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith 1225 (1263)
+.-.|+.+++..++|.+|||||||||+||+++|.. |.++++||||++|||.....|.++|++... +.++++|||
T Consensus 125 lLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~----P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 125 LLELVGLSDKADRYPAQLSGGQKQRVAIARALANN----PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC----CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 34455667778889999999999999999999988 889999999999999999999999998653 789999999
Q ss_pred chhHH-HhcceeEEEEecC
Q 000833 1226 RNNMF-ELADRLVGIYKTD 1243 (1263)
Q Consensus 1226 ~~~~~-~~ad~~~~v~~~~ 1243 (1263)
..++. .+|||+..+..|.
T Consensus 201 Em~Vvk~ic~rVavm~~G~ 219 (339)
T COG1135 201 EMEVVKRICDRVAVLDQGR 219 (339)
T ss_pred hHHHHHHHhhhheEeeCCE
Confidence 98777 6899999999884
No 58
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.52 E-value=1.1e-14 Score=136.92 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=88.6
Q ss_pred HHHHhcCCccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHH
Q 000833 1123 MYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFK 1202 (1263)
Q Consensus 1123 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~ 1202 (1263)
+.+++.+|-...+.++.........+.-.++..+.-.+-+.+||||||||||||+.|.- +-|+++||||+++|||.
T Consensus 88 V~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR----~~PilLLDEPFsALdP~ 163 (231)
T COG3840 88 VAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR----EQPILLLDEPFSALDPA 163 (231)
T ss_pred hhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc----cCCeEEecCchhhcCHH
Confidence 34444455444454433222222233334455566677889999999999999999974 48999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCeEEEEEcch-hHHHhcceeEEEEecC
Q 000833 1203 NVSIVGHYVKDRTK--DAQFIIISLRN-NMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1203 ~~~~~~~~l~~~~~--~~q~i~ith~~-~~~~~ad~~~~v~~~~ 1243 (1263)
-+..+..++..++. +.++++|||++ +...+||+++.+..|.
T Consensus 164 LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gr 207 (231)
T COG3840 164 LRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207 (231)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCE
Confidence 99999999988764 78999999995 5668999999999875
No 59
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.51 E-value=1.9e-14 Score=145.61 Aligned_cols=80 Identities=43% Similarity=0.673 Sum_probs=60.1
Q ss_pred EEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhh-hhhcccccccccccCCCCCceEEEE
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQM-RLNKVSELIHNSTNYQNLDSAGVSV 100 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~-r~~~~~~~i~~g~~~~~~~~a~v~~ 100 (1263)
|++|+|.||+||.+.++. ++++++|+|+||||||||||++||+|++|+++... |...+ .+++ +..+++.+.|+|++
T Consensus 1 i~~i~l~nf~~~~~~~~~-~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~v~~ 77 (178)
T cd03239 1 IKQITLKNFKSYRDETVV-GGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLL-FLAG-GGVKAGINSASVEI 77 (178)
T ss_pred CcEEEEECccCCCCCEEe-cCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchh-hhcc-cccCCCCceEEEEE
Confidence 578999999999998774 33445999999999999999999999999866554 33333 1111 22334489999999
Q ss_pred EEee
Q 000833 101 HFQE 104 (1263)
Q Consensus 101 ~~~~ 104 (1263)
+|.+
T Consensus 78 ~f~~ 81 (178)
T cd03239 78 TFDK 81 (178)
T ss_pred EEEC
Confidence 9943
No 60
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=1.6e-13 Score=155.21 Aligned_cols=154 Identities=16% Similarity=0.281 Sum_probs=102.8
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|.+|.|.||++|.+..+ +|++|+|+|+||||||||||++||+++++++ +.|.....++|+.| ...|.|.
T Consensus 1 M~l~~L~i~nFR~~~~~~l--~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~--s~R~~~~~~li~~g-----~~~~~v~ 71 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDL--ELSPGVNVIVGPNGQGKTNLLEAIYYLALGR--SHRTSRDKPLIRFG-----AEAFVIE 71 (365)
T ss_pred CEEEEEEEeCCcceeeeEE--EECCCeEEEECCCCCCHHHHHHHHHHHcccC--CccccchhhHHhCC-----CCeEEEE
Confidence 8999999999999998766 7888999999999999999999999886653 34677778899887 6789999
Q ss_pred EEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCccc-CHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCC
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPS-NFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 178 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~-~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~ 178 (1263)
++|.. ++... .+.+...+.+.+ ....+||..+ +..++...+ ..++++.+-..++.-.|
T Consensus 72 ~~~~~----~~~~~------~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l----------~~v~~~p~~~~L~~g~p 130 (365)
T TIGR00611 72 GRVSK----GDREV------TIPLEGLLKKKG-KKAKVNIDGQDKLSDLAGLL----------PMQLFAPEDLTLVKGSP 130 (365)
T ss_pred EEEEe----CCceE------EEeEEEEEccCC-CeEEECCCCCcCHHHHHhhc----------cEEEecCCCHHHhcCCh
Confidence 99932 11111 111222222222 3466666654 455665554 23455555556777788
Q ss_pred CCCCCCchhHHHHHHHHh-hh-hhhHHHHHHHHH
Q 000833 179 KGQGPHDEGFLEYLEDII-GT-DRYVEKIDESYK 210 (1263)
Q Consensus 179 ~~~~~~~~~~~~~le~~~-g~-~~~~~~~~~~~~ 210 (1263)
. .+|.+|+..+ .. ..|...+....+
T Consensus 131 ~-------~RR~fLD~~~~~~~~~y~~~~~~y~r 157 (365)
T TIGR00611 131 K-------YRRRFLDWGLFQVEPVYLSAWSDYQR 157 (365)
T ss_pred H-------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6 4789999444 43 234444444333
No 61
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.51 E-value=3.1e-14 Score=141.54 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=75.3
Q ss_pred cccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc-hhHHHhcc
Q 000833 1158 SWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR-NNMFELAD 1234 (1263)
Q Consensus 1158 ~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~-~~~~~~ad 1234 (1263)
....++.||||++.|+|||+++|+. |++++|||||+||||-....+-++|+++.+ +.++|+|||+ +.+..+||
T Consensus 139 ~~~~PsELSGGM~KRvaLARAiald----Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~D 214 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALD----PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIAD 214 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcC----CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhc
Confidence 4567899999999999999999988 899999999999999999999999998865 7899999999 67789999
Q ss_pred eeEEEEecC
Q 000833 1235 RLVGIYKTD 1243 (1263)
Q Consensus 1235 ~~~~v~~~~ 1243 (1263)
+++.+..+.
T Consensus 215 rv~~L~~gk 223 (263)
T COG1127 215 RVAVLADGK 223 (263)
T ss_pred eEEEEeCCE
Confidence 999999864
No 62
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.50 E-value=7.8e-14 Score=144.13 Aligned_cols=91 Identities=42% Similarity=0.679 Sum_probs=80.1
Q ss_pred CccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcce
Q 000833 1156 KKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADR 1235 (1263)
Q Consensus 1156 ~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~ 1235 (1263)
+....++..|||||+++++||..+++....|++++||||||+|||+.+...+.++|.++.++.++|+|||++..+..||+
T Consensus 105 ~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~ 184 (197)
T cd03278 105 GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADR 184 (197)
T ss_pred CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcce
Confidence 34456788999999999999999986445678899999999999999999999999988777899999999888899999
Q ss_pred eEEEEecC-CCc
Q 000833 1236 LVGIYKTD-NCT 1246 (1263)
Q Consensus 1236 ~~~v~~~~-~~s 1246 (1263)
+++|++.. +.|
T Consensus 185 v~~~~~~~~~~~ 196 (197)
T cd03278 185 LYGVTMQESGVS 196 (197)
T ss_pred EEEEEeccCCCC
Confidence 99999964 543
No 63
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=6.2e-14 Score=142.22 Aligned_cols=95 Identities=20% Similarity=0.180 Sum_probs=80.7
Q ss_pred CccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc-hhHHHh
Q 000833 1156 KKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR-NNMFEL 1232 (1263)
Q Consensus 1156 ~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~-~~~~~~ 1232 (1263)
+-..+.+++||||+|||||||+.++.. |++++||||+++||.-.+..+.+.|.++-. +.++++|||+ ++...+
T Consensus 122 ~~~~~~P~qLSGGMrQRVaiARAL~~~----P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~L 197 (248)
T COG1116 122 GFEDKYPHQLSGGMRQRVAIARALATR----PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYL 197 (248)
T ss_pred chhhcCccccChHHHHHHHHHHHHhcC----CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhh
Confidence 334567899999999999999999987 999999999999999999999999887643 6899999999 788899
Q ss_pred cceeEEEEecCC-CceeEEecCC
Q 000833 1233 ADRLVGIYKTDN-CTKSITINPG 1254 (1263)
Q Consensus 1233 ad~~~~v~~~~~-~s~~~~~~~~ 1254 (1263)
|||+|.++.+++ +...+.|++.
T Consensus 198 sdRivvl~~~P~~i~~~~~i~l~ 220 (248)
T COG1116 198 ADRVVVLSNRPGRIGEELEIDLP 220 (248)
T ss_pred hCEEEEecCCCcceeeEEecCCC
Confidence 999999998764 3345666544
No 64
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.50 E-value=8.2e-14 Score=150.61 Aligned_cols=100 Identities=48% Similarity=0.942 Sum_probs=87.0
Q ss_pred ecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH
Q 000833 1152 VRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF 1230 (1263)
Q Consensus 1152 ~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~ 1230 (1263)
..|++....++..|||||+++++||.+++...+.||+++||||||++||+..+..+.++|.++.+ +.++|+|||++.++
T Consensus 143 ~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~ 222 (247)
T cd03275 143 KNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF 222 (247)
T ss_pred ccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH
Confidence 34556667788999999999999999999766678899999999999999999999999998865 78999999999999
Q ss_pred HhcceeEEEEecCCC--ceeEEe
Q 000833 1231 ELADRLVGIYKTDNC--TKSITI 1251 (1263)
Q Consensus 1231 ~~ad~~~~v~~~~~~--s~~~~~ 1251 (1263)
..||++++|++..++ |+++|.
T Consensus 223 ~~~d~i~~~~~~~~~~~~~~~~~ 245 (247)
T cd03275 223 SKADALVGVYRDQECNSSKVLTL 245 (247)
T ss_pred hhCCeEEEEEecCCCCcceEEec
Confidence 999999999997654 555554
No 65
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2e-14 Score=139.58 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=80.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcch-hHHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRN-NMFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~-~~~~~ad~~~~v 1239 (1263)
+...|||||+||++||+.+|+. |.+++|||||++|||....+|-++|.++.++.++|+|||++ +.+..+|+....
T Consensus 146 sa~~LSGGQQQRLcIARalAv~----PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf 221 (253)
T COG1117 146 SALGLSGGQQQRLCIARALAVK----PEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFF 221 (253)
T ss_pred CccCCChhHHHHHHHHHHHhcC----CcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhh
Confidence 4557999999999999999988 89999999999999999999999999999999999999994 667899999998
Q ss_pred EecC----CCceeEEecCCcc
Q 000833 1240 YKTD----NCTKSITINPGSF 1256 (1263)
Q Consensus 1240 ~~~~----~~s~~~~~~~~~~ 1256 (1263)
+.|. +.|..+--+|..-
T Consensus 222 ~~G~LvE~g~T~~iF~~P~~~ 242 (253)
T COG1117 222 YLGELVEFGPTDKIFTNPKHK 242 (253)
T ss_pred cccEEEEEcCHHhhhcCccHH
Confidence 8874 4566666666543
No 66
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=5.2e-14 Score=145.31 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=76.3
Q ss_pred CCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcc-hhHHHh
Q 000833 1155 PKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLR-NNMFEL 1232 (1263)
Q Consensus 1155 ~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~-~~~~~~ 1232 (1263)
.+...+++..|||||+|||.||++||-. |++++||||++|+|+.....+.++|+++.+ +..+++|||+ ..++.+
T Consensus 130 ~~~~~r~i~~LSGGQ~QRV~lARAL~~~----p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 130 EDLRDRQIGELSGGQKQRVLLARALAQN----PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred hhhhCCcccccCcHHHHHHHHHHHhccC----CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence 3445678999999999999999999966 999999999999999999999999999875 8999999999 567799
Q ss_pred cceeEEEEec
Q 000833 1233 ADRLVGIYKT 1242 (1263)
Q Consensus 1233 ad~~~~v~~~ 1242 (1263)
+|+++.+.+.
T Consensus 206 ~D~vi~Ln~~ 215 (254)
T COG1121 206 FDRVICLNRH 215 (254)
T ss_pred CCEEEEEcCe
Confidence 9999999986
No 67
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.46 E-value=9.6e-14 Score=145.13 Aligned_cols=85 Identities=72% Similarity=1.108 Sum_probs=74.6
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccccccCCCCCceEEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|++|+|.|||+|.+..++.+++..+++|+|||||||||+|++|+|++|.+....|...+..++..+..+++.+.++|.
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVE 80 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEE
Confidence 78999999999999998887777778999999999999999999999999877667777788899887776777888898
Q ss_pred EEEee
Q 000833 100 VHFQE 104 (1263)
Q Consensus 100 ~~~~~ 104 (1263)
.+|..
T Consensus 81 ~~~~~ 85 (212)
T cd03274 81 VHFQE 85 (212)
T ss_pred EEEEe
Confidence 88853
No 68
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.46 E-value=9.1e-14 Score=138.61 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=74.6
Q ss_pred cccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc-hhHHHhcc
Q 000833 1158 SWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR-NNMFELAD 1234 (1263)
Q Consensus 1158 ~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~-~~~~~~ad 1234 (1263)
..+.++.|||||+|||.+|+++|.. ||++++|||+++|||-++..+-+.++++.+ +.+||||||+ ++.+.+||
T Consensus 129 ~~RyP~eLSGGQQQRVGv~RALAad----P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLad 204 (309)
T COG1125 129 ADRYPHELSGGQQQRVGVARALAAD----PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLAD 204 (309)
T ss_pred hhcCchhcCcchhhHHHHHHHHhcC----CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhc
Confidence 4568999999999999999999977 999999999999999999999999887754 7899999999 77889999
Q ss_pred eeEEEEecC
Q 000833 1235 RLVGIYKTD 1243 (1263)
Q Consensus 1235 ~~~~v~~~~ 1243 (1263)
++..+..|.
T Consensus 205 ri~vm~~G~ 213 (309)
T COG1125 205 RIAVMDAGE 213 (309)
T ss_pred eEEEecCCe
Confidence 999998774
No 69
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=2.4e-13 Score=147.67 Aligned_cols=88 Identities=38% Similarity=0.699 Sum_probs=79.7
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
...+..|||||+++++||.+++...+.||+++||||||++||+..+..+.++|.++.++.++|+|||++.++..||++++
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~ 240 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFR 240 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEE
Confidence 34678999999999999999986545678999999999999999999999999988778899999999999999999999
Q ss_pred EEecCCCc
Q 000833 1239 IYKTDNCT 1246 (1263)
Q Consensus 1239 v~~~~~~s 1246 (1263)
|+..++.|
T Consensus 241 ~~~~~~~~ 248 (251)
T cd03273 241 TRFVDGTS 248 (251)
T ss_pred EEeeCCEE
Confidence 99887765
No 70
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.44 E-value=2.1e-13 Score=141.83 Aligned_cols=83 Identities=23% Similarity=0.322 Sum_probs=75.2
Q ss_pred ccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhc
Q 000833 1157 KSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELA 1233 (1263)
Q Consensus 1157 ~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~a 1233 (1263)
...+++..|||||||||.||.+||-. ||+++|||||++||..|.-.+.++|+++.+ +..+|+|+|+++.+ .+|
T Consensus 131 la~r~~~~LSGGerQrv~iArALaQ~----~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 131 LADRPVDELSGGERQRVLIARALAQE----TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HhcCcccccChhHHHHHHHHHHHhcC----CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 35678999999999999999999976 999999999999999999999999999873 68999999997665 789
Q ss_pred ceeEEEEecC
Q 000833 1234 DRLVGIYKTD 1243 (1263)
Q Consensus 1234 d~~~~v~~~~ 1243 (1263)
|+++.+..|.
T Consensus 207 d~~i~lk~G~ 216 (258)
T COG1120 207 DHLILLKDGK 216 (258)
T ss_pred CEEEEEECCe
Confidence 9999999874
No 71
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.7e-13 Score=144.30 Aligned_cols=80 Identities=26% Similarity=0.378 Sum_probs=73.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
..+++||||++|||+||+++|.. |+++|.||||++||..+...|.++|+++.+ ++.+|+|||+.. ++.+||++
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~----P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri 224 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALN----PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV 224 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCC----CCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceE
Confidence 46889999999999999999988 899999999999999999999999999874 899999999976 46799999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.++.|.
T Consensus 225 ~VMYaG~ 231 (316)
T COG0444 225 AVMYAGR 231 (316)
T ss_pred EEEECcE
Confidence 9999884
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.43 E-value=7e-06 Score=107.59 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=45.7
Q ss_pred ceEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCc
Q 000833 19 RLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGK 70 (1263)
Q Consensus 19 ~m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~ 70 (1263)
+.+|++|.|.||.+|.+.++ +|++++++|+|||||||||+|+||++++..
T Consensus 4 ~~ki~~l~l~N~~~~~~~~~--~f~~~~~~l~G~NGaGKSTll~ai~~~l~~ 53 (1486)
T PRK04863 4 RGKFRSLTLVNWNGFFARTF--DLDELVTTLSGGNGAGKSTTMAAFVTALIP 53 (1486)
T ss_pred CceeeEEEEecccCccceEE--EecCCeEEEECCCCCCHHHHHHHHHccccC
Confidence 35899999999999999876 899899999999999999999999988754
No 73
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=2.8e-13 Score=139.46 Aligned_cols=92 Identities=23% Similarity=0.289 Sum_probs=81.6
Q ss_pred ceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEc
Q 000833 1148 VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISL 1225 (1263)
Q Consensus 1148 ~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith 1225 (1263)
+.-.|+..+...+++.+|||||+||||||+++|.. |++++||||+.+||...+..+..+|.++.+ +...++|||
T Consensus 121 lL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e----P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 121 LLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE----PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred HHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC----CCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 34455666777789999999999999999999988 999999999999999999999999988754 789999999
Q ss_pred c-hhHHHhcceeEEEEecC
Q 000833 1226 R-NNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1226 ~-~~~~~~ad~~~~v~~~~ 1243 (1263)
+ .+++..|||++.+..|.
T Consensus 197 D~eea~~ladrvvvl~~G~ 215 (345)
T COG1118 197 DQEEALELADRVVVLNQGR 215 (345)
T ss_pred CHHHHHhhcceEEEecCCe
Confidence 9 57789999999999884
No 74
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.41 E-value=4.5e-13 Score=124.74 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=74.9
Q ss_pred cccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHHHhcce
Q 000833 1158 SWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMFELADR 1235 (1263)
Q Consensus 1158 ~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~~~ad~ 1235 (1263)
-.-+|.+|||||+||||||++|+.. |.++|-||||-+||...-.+|+++|-.+. .+++.++|||++.++.-|+|
T Consensus 140 l~HyP~qLSGGEQQRVAiARAfa~~----P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R 215 (228)
T COG4181 140 LTHYPAQLSGGEQQRVALARAFAGR----PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDR 215 (228)
T ss_pred cccCccccCchHHHHHHHHHHhcCC----CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhh
Confidence 3457889999999999999999976 78999999999999999999999998765 37899999999999999999
Q ss_pred eEEEEecCC
Q 000833 1236 LVGIYKTDN 1244 (1263)
Q Consensus 1236 ~~~v~~~~~ 1244 (1263)
.+.+..|..
T Consensus 216 ~~r~~~G~l 224 (228)
T COG4181 216 QLRLRSGRL 224 (228)
T ss_pred eeeeeccee
Confidence 999987754
No 75
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.39 E-value=1.8e-12 Score=131.24 Aligned_cols=82 Identities=52% Similarity=0.850 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEEEEecC
Q 000833 1165 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1165 lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
|||||+++++||.+++.+.+.+||++||||||++||+.+...+.++|.++.+ +.++|+|||++.++..||+++.|++..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~~~ 174 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFVH 174 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEEeC
Confidence 9999999999999999876777999999999999999999999999988765 489999999998999999999999966
Q ss_pred CCc
Q 000833 1244 NCT 1246 (1263)
Q Consensus 1244 ~~s 1246 (1263)
+.|
T Consensus 175 ~~~ 177 (178)
T cd03239 175 GVS 177 (178)
T ss_pred Ccc
Confidence 554
No 76
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=9.2e-13 Score=123.50 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=77.5
Q ss_pred ecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH
Q 000833 1152 VRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF 1230 (1263)
Q Consensus 1152 ~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~ 1230 (1263)
|+...+...++..|||||+||++||++||+. |.+++|||||++|||.-+..+.+.|+.++. +.+.++|||...++
T Consensus 140 VGi~ek~~~YP~~LSGGQQQR~aIARaLame----P~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FA 215 (256)
T COG4598 140 VGIAEKADAYPAHLSGGQQQRVAIARALAME----PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFA 215 (256)
T ss_pred hCchhhhhcCccccCchHHHHHHHHHHHhcC----CceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHH
Confidence 3344555667889999999999999999998 899999999999999999999999999885 88999999998877
Q ss_pred -HhcceeEEEEecC
Q 000833 1231 -ELADRLVGIYKTD 1243 (1263)
Q Consensus 1231 -~~ad~~~~v~~~~ 1243 (1263)
..+++++.+++|.
T Consensus 216 R~Vss~v~fLh~G~ 229 (256)
T COG4598 216 RDVSSHVIFLHQGK 229 (256)
T ss_pred HhhhhheEEeecce
Confidence 5789999998873
No 77
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=1.8e-05 Score=106.34 Aligned_cols=174 Identities=16% Similarity=0.318 Sum_probs=117.7
Q ss_pred EEEEEEecCccccC----CCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcc-hhhhhhhcccccccccc-cCCCCC
Q 000833 21 FIKEMVMRNFKSYA----GEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLNKVSELIHNST-NYQNLD 94 (1263)
Q Consensus 21 ~i~~l~l~nFks~~----~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~-~~~~r~~~~~~~i~~g~-~~~~~~ 94 (1263)
.|++|.|.||+||. +.+.| +|++|+|+|+|||||||||||+||+|+|++. +...+|. .+|+.+. ..++..
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I-~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~ 77 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQII-DFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDV 77 (1311)
T ss_pred ccceeeeeceecCCCccccceee-ecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhh
Confidence 47899999999996 34456 7888999999999999999999999987652 2222332 3555432 222356
Q ss_pred ceEEEEEEeeccccCCCcccccCCceEEEEEEeec--C----------CCceEEEcCcccCH----HHHH-HHHHhCCCC
Q 000833 95 SAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFR--D----------NSSKYYINDRPSNF----TEVT-KKLKGKGVD 157 (1263)
Q Consensus 95 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~--~----------~~~~y~in~~~~~~----~~~~-~~~~~~~i~ 157 (1263)
.|.|.++|... .|..++|.|.+.. . +...|+.||.+++. .++. .+...+|++
T Consensus 78 ~a~V~l~F~~~-----------~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~ 146 (1311)
T TIGR00606 78 RAQIRLQFRDV-----------NGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVS 146 (1311)
T ss_pred hheeEEEEEcC-----------CCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCC
Confidence 79999999421 3456788887632 1 12456678875443 3553 445556876
Q ss_pred CCCCcc--ccchhhHHHHHhcCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 000833 158 LDNNRF--LILQGEVEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFD 217 (1263)
Q Consensus 158 ~~~~~~--~i~qg~v~~~~~~~~~~~~~~~~~~~~~le~~~g~~~~~~~~~~~~~~l~~~~~ 217 (1263)
...+.+ +++||++. +..+.|. ++..+|++++|+..|...++.+.........
T Consensus 147 ~~~f~~vi~~~Qge~~-~~~~~~~-------~rk~~~d~if~~~~y~k~~~~~~~~~k~~~~ 200 (1311)
T TIGR00606 147 KAVLNNVIFCHQEDSN-WPLSEGK-------ALKQKFDEIFSATRYIKALETLRQVRQTQGQ 200 (1311)
T ss_pred HHHHhhceeeCCcccc-cccCChH-------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 554443 46699984 6666775 4899999999999998766555544444433
No 78
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.2e-12 Score=140.15 Aligned_cols=149 Identities=22% Similarity=0.415 Sum_probs=107.3
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHH-cCcchhhhhhhcccccccccccCCCCCceEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFV-FGKRAKQMRLNKVSELIHNSTNYQNLDSAGV 98 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~-lg~~~~~~r~~~~~~~i~~g~~~~~~~~a~v 98 (1263)
|+|.+|.+.||.+|.+..+ +|+|++|+++|+||+||||||.||.++ .| .+.|+....++|+.| ...|.|
T Consensus 1 M~l~~L~L~nFRNy~~~~l--~~~p~~nvl~G~NgqGKTNlLEAI~~l~~g---rS~Rt~~~~~lir~~-----~~~~~i 70 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDL--DLSPGVNVLVGENGQGKTNLLEAIYLLALG---RSHRTSRDKELIRTG-----ADEAEI 70 (363)
T ss_pred CceeeeehhhcCCccccee--ccCCCcEEEECCCCCchHHHHHHHHHHccc---cCccccchhHHHhcC-----CccEEE
Confidence 8999999999999999888 899999999999999999999999986 55 356777888999988 678889
Q ss_pred EEEEeeccccCCCcccccCCceEEEEEEeecCCCceEEEcCcccC-HHHHHHHHHhCCCCCCCCccccchhhHHHHHhcC
Q 000833 99 SVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSN-FTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMK 177 (1263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~y~in~~~~~-~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~ 177 (1263)
...++.. +....+.-.+.+.|+..-.|||.+++ ..++...+ ++ +.+.-.-..++.-+
T Consensus 71 ~~~v~~~------------~~~~~~~~~~~~~g~~~vring~~~~~~~el~g~l---~~-------vlf~Pedl~Lv~G~ 128 (363)
T COG1195 71 SARVQRK------------GREGTLGLQISKKGRRRVRINGTKARKLAELAGHL---NV-------VLFTPEDLGLVKGS 128 (363)
T ss_pred EEEEeec------------cceeeeEEEeccCcceEEEECCcccccHHHHhhhC---ce-------EEecccccccccCC
Confidence 8888431 12334444555677777899999877 56666554 22 11111112355556
Q ss_pred CCCCCCCchhHHHHHHHHhhh--hhhHHHHHH
Q 000833 178 PKGQGPHDEGFLEYLEDIIGT--DRYVEKIDE 207 (1263)
Q Consensus 178 ~~~~~~~~~~~~~~le~~~g~--~~~~~~~~~ 207 (1263)
|. .||.+|+-.++. ..|-..+..
T Consensus 129 P~-------~RRrFLD~~l~~~~p~y~~~~~~ 153 (363)
T COG1195 129 PS-------DRRRFLDWLLFQIEPVYLEALSN 153 (363)
T ss_pred HH-------HHHHHHHHHHhccCcHHHHHHHH
Confidence 65 478999977762 345444333
No 79
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.38 E-value=9e-13 Score=150.00 Aligned_cols=80 Identities=30% Similarity=0.415 Sum_probs=74.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+++||||||||++||+.+|.. |+++|+||||++||+.....|.++|+++. .++.+|+|||++.+. .+||++
T Consensus 150 ~yPheLSGG~rQRv~iAmALa~~----P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv 225 (539)
T COG1123 150 RYPHQLSGGMRQRVMIAMALALK----PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRV 225 (539)
T ss_pred cCCcccCchHHHHHHHHHHHhCC----CCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeE
Confidence 47899999999999999999987 89999999999999999999999999987 389999999998775 689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+++|.
T Consensus 226 ~Vm~~G~ 232 (539)
T COG1123 226 VVMYKGE 232 (539)
T ss_pred EEEECCE
Confidence 9999985
No 80
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.36 E-value=1.2e-12 Score=139.48 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|+++.+ +..+|+|||+...+.+||+++
T Consensus 136 ~~~~~LS~G~~qrv~la~al~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~ 211 (218)
T cd03255 136 HYPSELSGGQQQRVAIARALAND----PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRII 211 (218)
T ss_pred cChhhcCHHHHHHHHHHHHHccC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEE
Confidence 35678999999999999999876 899999999999999999999999998764 689999999977667999999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 212 ~l~~G 216 (218)
T cd03255 212 ELRDG 216 (218)
T ss_pred EeeCC
Confidence 98765
No 81
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.36 E-value=1.7e-12 Score=138.15 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=70.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+.+..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++..+ .+||+++
T Consensus 134 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~ 209 (216)
T TIGR00960 134 ALPMQLSGGEQQRVAIARAIVHK----PPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTL 209 (216)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 35678999999999999999976 999999999999999999999999998754 68999999997655 6899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 210 ~l~~G 214 (216)
T TIGR00960 210 TLSRG 214 (216)
T ss_pred EEeCC
Confidence 98765
No 82
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=125.74 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=77.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcc-hhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLR-NNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~-~~~~~~ad~~~~ 1238 (1263)
+..+||||||.|+-||++||.. |.|++||||+||+||-.+..|-.+|+.+.. +.-++|.-|+ .++..+|||.|.
T Consensus 136 ~a~sLSGGERRR~EIARaLa~~----P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYI 211 (243)
T COG1137 136 KAYSLSGGERRRVEIARALAAN----PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYI 211 (243)
T ss_pred cccccccchHHHHHHHHHHhcC----CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEE
Confidence 4568999999999999999987 899999999999999999999999988875 6666666688 789999999999
Q ss_pred EEecC----CCceeEEecCCccccc
Q 000833 1239 IYKTD----NCTKSITINPGSFTVC 1259 (1263)
Q Consensus 1239 v~~~~----~~s~~~~~~~~~~~~~ 1259 (1263)
|+.|. |...-+.=||.+=++|
T Consensus 212 i~~G~vla~G~p~ei~~n~~Vr~~Y 236 (243)
T COG1137 212 ISDGKVLAEGSPEEIVNNEDVRRVY 236 (243)
T ss_pred EecCeEEecCCHHHHhcChhhhhhc
Confidence 99984 3333344444444443
No 83
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1.7e-12 Score=137.79 Aligned_cols=79 Identities=25% Similarity=0.304 Sum_probs=70.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+++..|||||++|++||++|+.. ||++||||||+|||+.++..+.++|.++.+ +..+|+|||++. +..+||++
T Consensus 126 ~~~~~LSgG~~qrl~la~al~~~----p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 201 (213)
T cd03259 126 RYPHELSGGQQQRVALARALARE----PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRI 201 (213)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEE
Confidence 35678999999999999999865 999999999999999999999999998753 689999999965 46789999
Q ss_pred EEEEec
Q 000833 1237 VGIYKT 1242 (1263)
Q Consensus 1237 ~~v~~~ 1242 (1263)
+.+..|
T Consensus 202 ~~l~~G 207 (213)
T cd03259 202 AVMNEG 207 (213)
T ss_pred EEEECC
Confidence 999865
No 84
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.35 E-value=1.9e-12 Score=144.80 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=72.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..||||||+|++||++|+.. |++++|||||++||+.++..+.++|+++.+ +.++|+|||+...+ .+||++
T Consensus 136 ~~~~~LSgGqkQRV~IARAL~~~----P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v 211 (343)
T TIGR02314 136 SYPSNLSGGQKQRVAIARALASN----PKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46789999999999999999976 899999999999999999999999998754 68999999996655 789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 212 ~vl~~G~ 218 (343)
T TIGR02314 212 AVISNGE 218 (343)
T ss_pred EEEECCE
Confidence 9998764
No 85
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.4e-12 Score=137.22 Aligned_cols=77 Identities=23% Similarity=0.237 Sum_probs=69.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchh-HHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++. .+..+|+|||++. +..+||+++
T Consensus 128 ~~~~LSgG~~qrl~la~al~~~----p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 203 (220)
T cd03293 128 YPHQLSGGMRQRVALARALAVD----PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVV 203 (220)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE
Confidence 4678999999999999999976 89999999999999999999999998874 2689999999976 567899999
Q ss_pred EEEe
Q 000833 1238 GIYK 1241 (1263)
Q Consensus 1238 ~v~~ 1241 (1263)
.+..
T Consensus 204 ~l~~ 207 (220)
T cd03293 204 VLSA 207 (220)
T ss_pred EEEC
Confidence 9984
No 86
>PRK02224 chromosome segregation protein; Provisional
Probab=99.35 E-value=2e-05 Score=102.89 Aligned_cols=187 Identities=22% Similarity=0.328 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1047 LEMVALLEAQLKELNPNLDSITEYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQM 1126 (1263)
Q Consensus 1047 ~~~i~~l~~~i~~l~~nl~~~~e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~ 1126 (1263)
...+..+...+..+...+..+..+......+......+..+......+...+..+.......|.. .+...|..+|..
T Consensus 673 ~~~~~~l~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 749 (880)
T PRK02224 673 REERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVE---TLERMLNETFDL 749 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33334444444333333333344444444444455555555555566666666666555555544 455568888998
Q ss_pred hcCC-ccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhccC--------CCCCeEEeecCcC
Q 000833 1127 ITLG-GDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHY--------KPTPLYVMDEIDA 1197 (1263)
Q Consensus 1127 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~--------~~~p~~ilDE~d~ 1197 (1263)
++.+ +...+.+.+. .+|.+ +.++|. ..++..||||++..++||+.+|+... .|+|++||||||+
T Consensus 750 ~~~~~~~~~i~~~~~-----~~i~~-~~~~g~-~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~ 822 (880)
T PRK02224 750 VYQNDAYSHIELDGE-----YELTV-YQKDGE-PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTV 822 (880)
T ss_pred HcCCCCeeEEEecCC-----cceee-eCCCCC-ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcc
Confidence 7653 3445554321 22322 334444 34788999999998888887776542 2457899999999
Q ss_pred CCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeEEEEecC
Q 000833 1198 ALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1198 ~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
+||+.++..+..+|..+.. ..|||+|||++.++..||++|+|++.+
T Consensus 823 ~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~~ 870 (880)
T PRK02224 823 FLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEKDP 870 (880)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeecCC
Confidence 9999999999999988764 369999999999999999999999876
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.35 E-value=3.2e-12 Score=134.58 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=70.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+..+..+.++|.++. .+..+|+|||++..+ .+||+++
T Consensus 122 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~ 197 (205)
T cd03226 122 RHPLSLSGGQKQRLAIAAALLSG----KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVL 197 (205)
T ss_pred CCchhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 45679999999999999999976 89999999999999999999999999874 468999999997655 6899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 198 ~l~~G 202 (205)
T cd03226 198 LLANG 202 (205)
T ss_pred EEECC
Confidence 99865
No 88
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.35 E-value=7e-13 Score=104.06 Aligned_cols=47 Identities=34% Similarity=0.615 Sum_probs=40.5
Q ss_pred EEEEEecCccccCCCcccccCCC--cceEEEcCCCCChhHHHHHHHHHcCc
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHK--SFSAVVGPNGSGKSNVIDAMLFVFGK 70 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~--~~~~i~G~nGsGKS~i~~ai~~~lg~ 70 (1263)
+++|.|.||.+|.+.++ +|++ .+++|+||||||||||||||.|+|-.
T Consensus 1 L~rl~L~Nw~~f~~~~~--~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGETI--DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CcEEEEeccCccCCeEE--eecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46899999999999555 7763 38999999999999999999998654
No 89
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.34 E-value=2.5e-12 Score=136.36 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=69.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||++..+ .+||+++
T Consensus 130 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 205 (211)
T cd03225 130 RSPFTLSGGQKQRVAIAGVLAMD----PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVI 205 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 35678999999999999999865 899999999999999999999999988764 68999999996655 5799999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 206 ~l~~G 210 (211)
T cd03225 206 VLEDG 210 (211)
T ss_pred EEeCC
Confidence 98754
No 90
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=2.4e-12 Score=138.83 Aligned_cols=80 Identities=29% Similarity=0.392 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|+++.. +..+|+|||+.. +..+||++
T Consensus 132 ~~~~~LSgG~~qrv~ia~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v 207 (235)
T cd03261 132 LYPAELSGGMKKRVALARALALD----PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRI 207 (235)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEE
Confidence 35678999999999999999966 999999999999999999999999998753 679999999975 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 208 ~~l~~G~ 214 (235)
T cd03261 208 AVLYDGK 214 (235)
T ss_pred EEEECCe
Confidence 9998764
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.34 E-value=2.6e-12 Score=137.38 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+...+..||+++
T Consensus 137 ~~~~~LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~ 212 (221)
T TIGR02211 137 HRPSELSGGERQRVAIARALVNQ----PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVL 212 (221)
T ss_pred CChhhCCHHHHHHHHHHHHHhCC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 35678999999999999999966 999999999999999999999999998753 689999999987777899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 213 ~l~~G 217 (221)
T TIGR02211 213 EMKDG 217 (221)
T ss_pred EEeCC
Confidence 99765
No 92
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.34 E-value=9.6e-13 Score=136.15 Aligned_cols=75 Identities=29% Similarity=0.460 Sum_probs=64.6
Q ss_pred EEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchh-hhhhhcccccccccccCCCCCceEEEE
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAK-QMRLNKVSELIHNSTNYQNLDSAGVSV 100 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~-~~r~~~~~~~i~~g~~~~~~~~a~v~~ 100 (1263)
|++|+|.||+||.+..+ +|++|+|+|+|||||||||||+||++++|++.. ..|+..+.++++.| ...+.|.+
T Consensus 1 i~~l~l~nfr~~~~~~l--~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~-----~~~~~i~~ 73 (198)
T cd03276 1 IESITLKNFMCHRHLQI--EFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDG-----ESSAKITV 73 (198)
T ss_pred CeEEEEeCccceeeeEE--ecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCC-----CCeEEEEE
Confidence 57899999999987766 888999999999999999999999999887544 35787888999876 56788999
Q ss_pred EEe
Q 000833 101 HFQ 103 (1263)
Q Consensus 101 ~~~ 103 (1263)
+|.
T Consensus 74 ~~~ 76 (198)
T cd03276 74 TLK 76 (198)
T ss_pred EEE
Confidence 994
No 93
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.34 E-value=2.6e-12 Score=136.38 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=69.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..|||||+++++||.+|+.. |+++||||||+|||+..+..+.++|.++. .+..+|+|||+... ..+||+++
T Consensus 128 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 203 (213)
T cd03235 128 RQIGELSGGQQQRVLLARALVQD----PDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 35678999999999999999865 99999999999999999999999999876 46799999999755 47899999
Q ss_pred EEEe
Q 000833 1238 GIYK 1241 (1263)
Q Consensus 1238 ~v~~ 1241 (1263)
.+..
T Consensus 204 ~l~~ 207 (213)
T cd03235 204 LLNR 207 (213)
T ss_pred EEcC
Confidence 8864
No 94
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.34 E-value=2.7e-12 Score=136.47 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=69.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|+++.+ +..+|+|||++.. ..+||+++.
T Consensus 134 ~~~~LS~G~~qrl~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~ 209 (214)
T TIGR02673 134 FPEQLSGGEQQRVAIARAIVNS----PPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVII 209 (214)
T ss_pred ChhhCCHHHHHHHHHHHHHhCC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 5678999999999999999865 899999999999999999999999998753 6899999999655 468999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 210 l~~G 213 (214)
T TIGR02673 210 LDDG 213 (214)
T ss_pred ecCC
Confidence 8754
No 95
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.33 E-value=3.3e-12 Score=131.05 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||+++++||++++.. |+++||||||++||+..+..+.++|.++.. +.++|+|||++.. ..+||++
T Consensus 93 ~~~~~LS~G~~qrl~laral~~~----p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~ 168 (180)
T cd03214 93 RPFNELSGGERQRVLLARALAQE----PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRV 168 (180)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45678999999999999999976 999999999999999999999999998765 6899999999765 4899999
Q ss_pred EEEEec
Q 000833 1237 VGIYKT 1242 (1263)
Q Consensus 1237 ~~v~~~ 1242 (1263)
+.+..+
T Consensus 169 ~~l~~g 174 (180)
T cd03214 169 ILLKDG 174 (180)
T ss_pred EEEECC
Confidence 998865
No 96
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.33 E-value=1.7e-12 Score=133.76 Aligned_cols=92 Identities=20% Similarity=0.172 Sum_probs=81.0
Q ss_pred ceeeecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEc
Q 000833 1148 VVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISL 1225 (1263)
Q Consensus 1148 ~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith 1225 (1263)
+.-.|+..+...+.+++||||++|||.||++||.. ||++++|||+++|||-.+..+-+-|.++.+ +.+++||||
T Consensus 148 ~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~----~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitH 223 (386)
T COG4175 148 ALELVGLEGYADKYPNELSGGMQQRVGLARALAND----PDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITH 223 (386)
T ss_pred HHHHcCchhhhhcCcccccchHHHHHHHHHHHccC----CCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 44456667777889999999999999999999977 999999999999999999999998877654 679999999
Q ss_pred c-hhHHHhcceeEEEEecC
Q 000833 1226 R-NNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1226 ~-~~~~~~ad~~~~v~~~~ 1243 (1263)
+ ++.+.+.||+..+..|.
T Consensus 224 DLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 224 DLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred CHHHHHhccceEEEecCCe
Confidence 9 78889999998887764
No 97
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.33 E-value=4e-12 Score=135.80 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=71.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||++|++||++++.. |+++||||||+|||+.++..+.++|.++..+..+|+|||+.....+||+++.+.
T Consensus 137 ~~~~LSgG~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~ 212 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLND----PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMD 212 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEe
Confidence 4678999999999999999966 899999999999999999999999998876689999999987778999999997
Q ss_pred ec
Q 000833 1241 KT 1242 (1263)
Q Consensus 1241 ~~ 1242 (1263)
.+
T Consensus 213 ~g 214 (220)
T cd03245 213 SG 214 (220)
T ss_pred CC
Confidence 65
No 98
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.32 E-value=6.1e-12 Score=136.71 Aligned_cols=89 Identities=37% Similarity=0.684 Sum_probs=79.2
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
...+..|||||+++++||..+++....|||++||||||++||+..+..+.+.|.++.+++++|++||.+.+..+||+++.
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~ 232 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYG 232 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEE
Confidence 35678899999999999999986444578999999999999999999999999988768899999999999999999999
Q ss_pred EEecCCCce
Q 000833 1239 IYKTDNCTK 1247 (1263)
Q Consensus 1239 v~~~~~~s~ 1247 (1263)
+.-.++.|+
T Consensus 233 l~~~~~~~~ 241 (243)
T cd03272 233 VKFRNKVST 241 (243)
T ss_pred EEEECCEEe
Confidence 998877654
No 99
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.32 E-value=3.5e-12 Score=136.58 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=70.9
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
.+..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++. +..+||+++
T Consensus 111 ~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 186 (230)
T TIGR01184 111 RPGQLSGGMKQRVAIARALSIR----PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVV 186 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 5678999999999999999976 899999999999999999999999988753 679999999965 467899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 187 ~l~~G~ 192 (230)
T TIGR01184 187 MLTNGP 192 (230)
T ss_pred EEeCCc
Confidence 998875
No 100
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.32 E-value=4.7e-12 Score=120.83 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=75.1
Q ss_pred ecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH
Q 000833 1152 VRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF 1230 (1263)
Q Consensus 1152 ~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~ 1230 (1263)
|+..++...-|.+|||||+||++||.+++.. |++++-||||.+|||.+...++.++.++.. ++++++.||+..++
T Consensus 125 VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~----P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 125 VGLKHKARALPSQLSGGEQQRVAIARAIVNQ----PAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred hccchhhhcCccccCchHHHHHHHHHHHccC----CCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 3444455556789999999999999999877 899999999999999999999999988764 89999999997776
Q ss_pred -HhcceeEEEEecC
Q 000833 1231 -ELADRLVGIYKTD 1243 (1263)
Q Consensus 1231 -~~ad~~~~v~~~~ 1243 (1263)
.+..+++.+..|.
T Consensus 201 ~~~~~rvl~l~~Gr 214 (223)
T COG2884 201 NRMRHRVLALEDGR 214 (223)
T ss_pred HhccCcEEEEeCCE
Confidence 4677888887763
No 101
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=3.6e-12 Score=135.07 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=70.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~v 1239 (1263)
.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++..+.++|+|||+.... .+||+++.+
T Consensus 127 ~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l 202 (211)
T cd03264 127 KIGSLSGGMRRRVGIAQALVGD----PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVL 202 (211)
T ss_pred chhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 5678999999999999999965 99999999999999999999999999887678999999997654 689999998
Q ss_pred Eec
Q 000833 1240 YKT 1242 (1263)
Q Consensus 1240 ~~~ 1242 (1263)
..+
T Consensus 203 ~~g 205 (211)
T cd03264 203 NKG 205 (211)
T ss_pred ECC
Confidence 865
No 102
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.32 E-value=2.4e-05 Score=100.55 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 000833 744 AEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHSYLEKQLDSLKAASEPRKDEIDRLEE 823 (1263)
Q Consensus 744 l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~ 823 (1263)
++.+.......+.+++..+..+...+..++..+..+..++.....++..++.+......+...+.....+... .....
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~--~~~~k 1311 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDK--NDYEK 1311 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHH
Confidence 3444455555555555555556666666666666666666666666666677666666666666554333322 34556
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000833 824 LQKIISAEEKEIEKIVNGSKDLKEKALQLQ 853 (1263)
Q Consensus 824 l~~~i~~~~~ei~~l~~~l~~~~~~~~~l~ 853 (1263)
+...+..++.++....+.+.++...+..+.
T Consensus 1312 L~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1312 LKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666665555
No 103
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=4.6e-12 Score=140.56 Aligned_cols=80 Identities=24% Similarity=0.320 Sum_probs=72.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..|||||++|++||.+++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+.. +..+||+++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~----P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAME----PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 56789999999999999999987 999999999999999999999999988754 789999999965 668999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 237 vl~~G~ 242 (305)
T PRK13651 237 FFKDGK 242 (305)
T ss_pred EEECCE
Confidence 998764
No 104
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.32 E-value=4.4e-12 Score=136.07 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=70.2
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEEEE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVGIY 1240 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~v~ 1240 (1263)
+..|||||++|++||.+|+.. ||++||||||+|||+.++..+.++|.++.+...+|+|||+... ..+||+++.+.
T Consensus 139 ~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 214 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANE----PEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLL 214 (227)
T ss_pred cccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEe
Confidence 578999999999999999865 8999999999999999999999999988655899999999654 57899999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.|.
T Consensus 215 ~G~ 217 (227)
T cd03260 215 NGR 217 (227)
T ss_pred CCE
Confidence 764
No 105
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.32 E-value=9.2e-12 Score=124.98 Aligned_cols=86 Identities=20% Similarity=0.279 Sum_probs=74.3
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
..++..|||||+++++||.+++.. .||+++|||||+++||+.++..+.++|+++. .+..+|+|||++.....||+++
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~--~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~ 159 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSE--PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWII 159 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhC--CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 346789999999999999988742 2378999999999999999999999998875 4789999999987788999999
Q ss_pred EEEecCCCc
Q 000833 1238 GIYKTDNCT 1246 (1263)
Q Consensus 1238 ~v~~~~~~s 1246 (1263)
.+..+.+.+
T Consensus 160 ~l~~g~~~~ 168 (176)
T cd03238 160 DFGPGSGKS 168 (176)
T ss_pred EECCCCCCC
Confidence 998876543
No 106
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.31 E-value=6.6e-12 Score=126.52 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=68.9
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||.+++.. |+++||||||++||+.++..+.++|.++ +..+|+|||++....+||+++.+.
T Consensus 88 ~~~~LS~G~~~rv~laral~~~----p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~ 161 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHK----PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLD 161 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcC----CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEc
Confidence 4578999999999999999865 9999999999999999999999999877 479999999988888999999887
Q ss_pred ec
Q 000833 1241 KT 1242 (1263)
Q Consensus 1241 ~~ 1242 (1263)
.+
T Consensus 162 ~~ 163 (166)
T cd03223 162 GE 163 (166)
T ss_pred CC
Confidence 64
No 107
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.31 E-value=6e-12 Score=128.15 Aligned_cols=74 Identities=24% Similarity=0.326 Sum_probs=67.9
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1165 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1165 lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
|||||+++++||.+++.. |+++||||||+|||+..+..+.++|..+.. +..+|+|||+...+..||+++.+..+
T Consensus 97 LS~G~~qrv~la~al~~~----p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 171 (173)
T cd03246 97 LSGGQRQRLGLARALYGN----PRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDG 171 (173)
T ss_pred cCHHHHHHHHHHHHHhcC----CCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 999999999999999966 999999999999999999999999988754 68999999998777899999998765
No 108
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.31 E-value=4.9e-12 Score=141.22 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=71.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+.+..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|+++.. +..+|++||+... ..+||+++
T Consensus 120 ~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~ 195 (302)
T TIGR01188 120 RPVGTYSGGMRRRLDIAASLIHQ----PDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIA 195 (302)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 45779999999999999999876 999999999999999999999999998754 6899999999654 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 196 ~l~~G~ 201 (302)
T TIGR01188 196 IIDHGR 201 (302)
T ss_pred EEECCE
Confidence 998763
No 109
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.30 E-value=5.4e-12 Score=141.71 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=72.4
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch-hHHHhccee
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN-NMFELADRL 1236 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~-~~~~~ad~~ 1236 (1263)
.+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.. +.++|++||+. .+..+||++
T Consensus 167 ~~~~~~LS~G~kqrv~lA~aL~~~----P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i 242 (340)
T PRK13536 167 DARVSDLSGGMKRRLTLARALIND----PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 242 (340)
T ss_pred CCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 346789999999999999999976 899999999999999999999999998754 78999999995 455799999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 243 ~il~~G~ 249 (340)
T PRK13536 243 CVLEAGR 249 (340)
T ss_pred EEEECCE
Confidence 9998773
No 110
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.30 E-value=5.3e-12 Score=140.53 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..||||||++++||.+|+.. |+++||||||+|||+.++..+.++|+++.. +.++|++||+.. +..+||+++
T Consensus 134 ~~~~~LS~G~~qrl~la~aL~~~----P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~ 209 (306)
T PRK13537 134 AKVGELSGGMKRRLTLARALVND----PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLC 209 (306)
T ss_pred CchhhCCHHHHHHHHHHHHHhCC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 46779999999999999999976 899999999999999999999999998854 689999999954 567899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 210 il~~G~ 215 (306)
T PRK13537 210 VIEEGR 215 (306)
T ss_pred EEECCE
Confidence 998763
No 111
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=5.5e-12 Score=136.98 Aligned_cols=80 Identities=25% Similarity=0.314 Sum_probs=70.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||++|++||.+++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+...+ .+||++
T Consensus 140 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v 215 (241)
T cd03256 140 QRADQLSGGQQQRVAIARALMQQ----PKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRI 215 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999999999976 899999999999999999999999998753 68999999996555 589999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 216 ~~l~~G~ 222 (241)
T cd03256 216 VGLKDGR 222 (241)
T ss_pred EEEECCE
Confidence 9998764
No 112
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=1.1e-11 Score=136.20 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=84.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
....|||||+++++||+.+++..+.+||++|||||+++||+.....+.++|.++..+.++|+|||++.+..+||+++.|.
T Consensus 167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEE
Confidence 45579999999999998877654467999999999999999999999999998877889999999998999999999999
Q ss_pred ec-CCCceeEEecCCc
Q 000833 1241 KT-DNCTKSITINPGS 1255 (1263)
Q Consensus 1241 ~~-~~~s~~~~~~~~~ 1255 (1263)
.+ .+++....++|..
T Consensus 247 ~~~~~~~~~~~~~~~~ 262 (276)
T cd03241 247 KEVEGGRTVTKVRELD 262 (276)
T ss_pred EecCCCeEEEEhhhcC
Confidence 95 5668888888765
No 113
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=5e-12 Score=136.66 Aligned_cols=80 Identities=25% Similarity=0.354 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+.. +..+||++
T Consensus 132 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i 207 (239)
T cd03296 132 RYPAQLSGGQRQRVALARALAVE----PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRV 207 (239)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 35678999999999999999876 899999999999999999999999998753 679999999965 56789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 208 ~~l~~G~ 214 (239)
T cd03296 208 VVMNKGR 214 (239)
T ss_pred EEEECCe
Confidence 9998763
No 114
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.30 E-value=6.9e-12 Score=135.60 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+++..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++. .+..+|+|||+...+ .+||+++
T Consensus 139 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~ 214 (236)
T cd03219 139 RPAGELSYGQQRRLEIARALATD----PKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVT 214 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 35779999999999999999865 89999999999999999999999999876 467999999997654 7899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 215 ~l~~G~ 220 (236)
T cd03219 215 VLDQGR 220 (236)
T ss_pred EEeCCE
Confidence 998763
No 115
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=6.2e-12 Score=140.95 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=72.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||+||++||++|+.. |+++|+||||+|||+.++..+.++|.++.. +..+|+|||+...+ .+||++
T Consensus 149 ~~p~~LSgGq~QRv~iArAL~~~----P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri 224 (326)
T PRK11022 149 VYPHQLSGGMSQRVMIAMAIACR----PKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI 224 (326)
T ss_pred CCchhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46789999999999999999987 899999999999999999999999998754 68999999997655 789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.++.|.
T Consensus 225 ~vm~~G~ 231 (326)
T PRK11022 225 IVMYAGQ 231 (326)
T ss_pred EEEECCE
Confidence 9999864
No 116
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=6.7e-12 Score=138.81 Aligned_cols=80 Identities=30% Similarity=0.375 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+++..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|.++.. +.++|+|||+... ..+||++
T Consensus 140 ~~~~~LSgGq~qrv~iAraL~~~----P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv 215 (287)
T PRK13637 140 KSPFELSGGQKRRVAIAGVVAME----PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRI 215 (287)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46789999999999999999976 999999999999999999999999998753 6899999999654 5789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 216 ~~l~~G~ 222 (287)
T PRK13637 216 IVMNKGK 222 (287)
T ss_pred EEEECCE
Confidence 9998764
No 117
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=6e-12 Score=142.36 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+++..|||||++|++||++|+.. |+++||||||+|||+.++..+.++|+++.+ +..+|+|||+... ..+||++
T Consensus 136 ~~~~~LSgGq~qRv~lAraL~~~----p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v 211 (343)
T PRK11153 136 RYPAQLSGGQKQRVAIARALASN----PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRV 211 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999999999976 999999999999999999999999998753 6899999999655 5689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 212 ~~l~~G~ 218 (343)
T PRK11153 212 AVIDAGR 218 (343)
T ss_pred EEEECCE
Confidence 9998764
No 118
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.30 E-value=6.1e-12 Score=135.15 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=70.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||+++++||.+|+.. |+++||||||++||+.++..+.++|+++.. +..+|+|||+...+ .+||++
T Consensus 111 ~~~~~LSgGe~qrv~iaraL~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i 186 (246)
T cd03237 111 REVPELSGGELQRVAIAACLSKD----ADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL 186 (246)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45778999999999999999865 899999999999999999999999998753 68999999996554 589999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+....
T Consensus 187 ~~l~~~~ 193 (246)
T cd03237 187 IVFEGEP 193 (246)
T ss_pred EEEcCCC
Confidence 9886543
No 119
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.30 E-value=4.4e-12 Score=144.43 Aligned_cols=81 Identities=27% Similarity=0.356 Sum_probs=73.9
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhcce
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADR 1235 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~ 1235 (1263)
.+.++.||||||||+|||++||.. |.++|+|||+++||+.....+.++|+++.. +..++||||+..+. .+|||
T Consensus 424 ~ryP~elSGGQrQRvaIARALa~~----P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 424 DRYPHELSGGQRQRVAIARALALE----PKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADR 499 (539)
T ss_pred hcCchhcCcchhHHHHHHHHHhcC----CCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCce
Confidence 457889999999999999999987 889999999999999999999999998865 68999999996555 68999
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
++.++.|.
T Consensus 500 v~vm~~G~ 507 (539)
T COG1123 500 VAVMYDGR 507 (539)
T ss_pred EEEEECCe
Confidence 99999985
No 120
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.30 E-value=6.4e-12 Score=140.79 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=72.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||+||++||++|+.. |+++||||||+|||..++..+.++|.++.+ +..+|+|||+...+ .+||++
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~----P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILE----PKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 45779999999999999999977 899999999999999999999999998754 78999999997665 689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.++.|.
T Consensus 233 ~vl~~G~ 239 (331)
T PRK15079 233 LVMYLGH 239 (331)
T ss_pred EEEECCE
Confidence 9998764
No 121
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=5.4e-12 Score=142.71 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcch-hHHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRN-NMFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~-~~~~~ad~~ 1236 (1263)
+.+..|||||+||++||++|+.. |++++||||+++||+..+..+...|+++.+ +..+|+|||+. .++.+||++
T Consensus 130 ~~~~~LSgGq~QRvalARAL~~~----P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i 205 (356)
T PRK11650 130 RKPRELSGGQRQRVAMGRAIVRE----PAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV 205 (356)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46779999999999999999966 899999999999999999999999988754 68999999995 577899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 206 ~vl~~G~ 212 (356)
T PRK11650 206 VVMNGGV 212 (356)
T ss_pred EEEeCCE
Confidence 9998764
No 122
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.29 E-value=8.4e-12 Score=133.82 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=71.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++..+.++|+|||++..+..||+++.+.
T Consensus 147 ~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~ 222 (226)
T cd03248 147 KGSQLSGGQKQRVAIARALIRN----PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLD 222 (226)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEec
Confidence 4678999999999999999865 899999999999999999999999998876789999999987777899999987
Q ss_pred ec
Q 000833 1241 KT 1242 (1263)
Q Consensus 1241 ~~ 1242 (1263)
.+
T Consensus 223 ~g 224 (226)
T cd03248 223 GG 224 (226)
T ss_pred CC
Confidence 54
No 123
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.29 E-value=7e-12 Score=135.67 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=70.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++. .+..+|+|||+... ..+||++
T Consensus 129 ~~~~~LSgGqkqrl~laraL~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 129 EWPAALSGGQKQRVALARALIHR----PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999999999976 89999999999999999999999998864 36899999999765 5789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..+.
T Consensus 205 ~~l~~G~ 211 (257)
T PRK11247 205 LLIEEGK 211 (257)
T ss_pred EEEECCE
Confidence 9998764
No 124
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.29 E-value=9.3e-12 Score=134.57 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=72.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
.++..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++..+..+|++||++..+..||+++.+
T Consensus 134 ~~~~~LSgG~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l 209 (237)
T cd03252 134 EQGAGLSGGQRQRIAIARALIHN----PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVM 209 (237)
T ss_pred cCCCcCCHHHHHHHHHHHHHhhC----CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 35779999999999999999966 89999999999999999999999999887678999999998777789999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 210 ~~G~ 213 (237)
T cd03252 210 EKGR 213 (237)
T ss_pred ECCE
Confidence 8763
No 125
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.29 E-value=6.2e-12 Score=132.89 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=70.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+.+..|||||+++++||++++.. ||++||||||+|||+..+..+.++|.++.+ +.++|+|||++..+ .+||+++
T Consensus 122 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~ 197 (208)
T cd03268 122 KKVKGFSLGMKQRLGIALALLGN----PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG 197 (208)
T ss_pred hhHhhCCHHHHHHHHHHHHHhcC----CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE
Confidence 35678999999999999999865 899999999999999999999999998764 68999999997655 6899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..+
T Consensus 198 ~l~~g 202 (208)
T cd03268 198 IINKG 202 (208)
T ss_pred EEECC
Confidence 99865
No 126
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.29 E-value=3.7e-12 Score=135.26 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=73.9
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhcce
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADR 1235 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~ 1235 (1263)
...+++|||||+|||+||+++|.. |.++|-||||++||......|.++|+++.. ++-+++|||+..+. .+||+
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~----P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANE----PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHcCC----CCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 347899999999999999999866 899999999999999999999999998864 89999999997776 68999
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
++.+.+|.
T Consensus 228 V~VM~~G~ 235 (534)
T COG4172 228 VYVMQHGE 235 (534)
T ss_pred EEEEeccE
Confidence 99999985
No 127
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.29 E-value=1e-11 Score=127.18 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=70.9
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
+..|||||+++++||.+++.. |+++||||||++||+..+..+.++|.++..+..+|+|||++.....||+++.+..
T Consensus 96 ~~~LS~G~~qrv~laral~~~----p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~ 171 (178)
T cd03247 96 GRRFSGGERQRLALARILLQD----APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLEN 171 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 668999999999999999966 8999999999999999999999999988667899999999877778999999876
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
+.
T Consensus 172 g~ 173 (178)
T cd03247 172 GK 173 (178)
T ss_pred CE
Confidence 53
No 128
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.29 E-value=6.6e-12 Score=135.15 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+++..|||||+++++||.+|+.. ||++||||||+|||+.++..+.++|.++.+ +..+|+|||+...+ .+||++
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i 216 (228)
T cd03257 141 RYPHELSGGQRQRVAIARALALN----PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRV 216 (228)
T ss_pred CCchhcCHHHHHHHHHHHHHhcC----CCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 35678999999999999999865 899999999999999999999999998764 68999999997665 589999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 217 ~~l~~G~ 223 (228)
T cd03257 217 AVMYAGK 223 (228)
T ss_pred EEEeCCE
Confidence 9998653
No 129
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.29 E-value=6.9e-12 Score=140.63 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=72.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.++.|||||+||++||++++.. |+++|+||||+|||..++..+.++|.++.. +..+|+|||+...+ .+||++
T Consensus 157 ~~p~~LSgG~~QRv~IArAL~~~----P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 157 MYPHEFSGGMRQRVMIAMALLCR----PKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 35779999999999999999977 899999999999999999999999998754 68999999997665 689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.++.|.
T Consensus 233 ~vm~~G~ 239 (330)
T PRK09473 233 LVMYAGR 239 (330)
T ss_pred EEEECCE
Confidence 9998774
No 130
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=1e-11 Score=126.23 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=67.5
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1165 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1165 lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++..+..+|++||++..+..||+++.+..+
T Consensus 97 LS~G~~~rl~la~al~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 97 LSGGQRQRIAIARALLRD----PPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred hCHHHHHHHHHHHHHhcC----CCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCC
Confidence 999999999999999865 89999999999999999999999999887678999999997777669999988754
No 131
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.29 E-value=7.9e-12 Score=132.96 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=69.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
.+..|||||+++++||++++.. |+++||||||+|||+..+..+.++|.++. .+..+|+|||++... .+||+++.
T Consensus 133 ~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~ 208 (214)
T cd03292 133 LPAELSGGEQQRVAIARAIVNS----PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIA 208 (214)
T ss_pred ChhhcCHHHHHHHHHHHHHHcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4678999999999999999865 89999999999999999999999999875 468999999997555 58999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 209 l~~G 212 (214)
T cd03292 209 LERG 212 (214)
T ss_pred EeCC
Confidence 8765
No 132
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.29 E-value=7.7e-12 Score=132.91 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=70.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+..+..+.++|.++.+ +.++|++||++.. ..+||+++
T Consensus 131 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~ 206 (213)
T cd03262 131 AYPAQLSGGQQQRVAIARALAMN----PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVI 206 (213)
T ss_pred hCccccCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 35679999999999999999976 899999999999999999999999998764 6799999999655 47899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 207 ~l~~g 211 (213)
T cd03262 207 FMDDG 211 (213)
T ss_pred EEeCC
Confidence 98765
No 133
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.29 E-value=6.6e-12 Score=140.22 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=71.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+.+..|||||++|++||.+|+.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||+... ..+||+++
T Consensus 131 ~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~ 206 (303)
T TIGR01288 131 VRVALLSGGMKRRLTLARALIND----PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC 206 (303)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 45779999999999999999866 899999999999999999999999998754 6899999999654 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 207 ~l~~G~ 212 (303)
T TIGR01288 207 VLESGR 212 (303)
T ss_pred EEECCE
Confidence 998763
No 134
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.29 E-value=7.3e-12 Score=140.89 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=71.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||+||++||++|+.. ||++|||||+++||+..+..+.+.|.++.. +.++|+|||+.. +..+||++
T Consensus 125 ~~p~~LSGGq~QRV~lARAL~~~----p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 125 RYPDELSGGMQQRVGLARALAAE----PDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46779999999999999999966 999999999999999999999999988753 689999999965 67899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 201 ~vl~~G~ 207 (363)
T TIGR01186 201 VIMKAGE 207 (363)
T ss_pred EEEeCCE
Confidence 9998763
No 135
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=8.9e-12 Score=135.74 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|+++..+.++|+|||+... ..+||+++.
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 142 ESAFALSGGQQQRLCIARAMAVS----PSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEE
Confidence 35678999999999999999865 8999999999999999999999999988667899999999754 588999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 218 l~~G~ 222 (250)
T PRK14245 218 FYMGE 222 (250)
T ss_pred EECCE
Confidence 98763
No 136
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.29 E-value=7.4e-12 Score=141.48 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC---CCeEEEEEcch-hHHHhcce
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK---DAQFIIISLRN-NMFELADR 1235 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~---~~q~i~ith~~-~~~~~ad~ 1235 (1263)
+.+..|||||++|++||++|+.. |++++||||+++||+..+..+...|+++.. +.++|+|||+. .++.+||+
T Consensus 133 ~~~~~LSgGq~QRvaLARAL~~~----P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dr 208 (362)
T TIGR03258 133 HLPAQLSGGMQQRIAIARAIAIE----PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADK 208 (362)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCE
Confidence 46789999999999999999976 999999999999999999999999988754 57999999995 56789999
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
++.+..|.
T Consensus 209 i~vl~~G~ 216 (362)
T TIGR03258 209 AGIMKDGR 216 (362)
T ss_pred EEEEECCE
Confidence 99998763
No 137
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.29 E-value=9.1e-12 Score=129.75 Aligned_cols=88 Identities=25% Similarity=0.375 Sum_probs=74.1
Q ss_pred ccccccCChhHHHHHHHHHHHHhcc--CCCCCeEEeecCcCCCCHHHHH-HHHHHHHHhcC--CCeEEEEEcchhHHHhc
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHH--YKPTPLYVMDEIDAALDFKNVS-IVGHYVKDRTK--DAQFIIISLRNNMFELA 1233 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~--~~~~p~~ilDE~d~~ld~~~~~-~~~~~l~~~~~--~~q~i~ith~~~~~~~a 1233 (1263)
.+++..|||||+++++||+.+|+.. ..+||+++||||+++||+..+. .+.++|.++.+ +.++|+|||++.+...|
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 3467899999999988776555432 4678999999999999999999 99999988765 67999999999888899
Q ss_pred ceeEEEEecC-CCc
Q 000833 1234 DRLVGIYKTD-NCT 1246 (1263)
Q Consensus 1234 d~~~~v~~~~-~~s 1246 (1263)
|+++.+.+.. +.|
T Consensus 190 d~i~~l~~~~~~~~ 203 (204)
T cd03240 190 DHIYRVEKDGRQKS 203 (204)
T ss_pred CEEEEEeeCCCCCC
Confidence 9999998865 443
No 138
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=8.9e-12 Score=136.18 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=72.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|+++..+.++|+|||+... ..+||+++.
T Consensus 150 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~ 225 (258)
T PRK14268 150 SPALSLSGGQQQRLCIARTLAVK----PKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGF 225 (258)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEE
Confidence 35679999999999999999976 8999999999999999999999999988667899999999654 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 226 l~~G~ 230 (258)
T PRK14268 226 FLMGE 230 (258)
T ss_pred EECCE
Confidence 98764
No 139
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.29 E-value=7.7e-12 Score=134.32 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=70.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++.....||+++.
T Consensus 143 ~~~~LS~Ge~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~ 218 (228)
T PRK10584 143 LPAQLSGGEQQRVALARAFNGR----PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLR 218 (228)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence 5678999999999999999865 899999999999999999999999998753 6799999999877788999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 219 l~~g 222 (228)
T PRK10584 219 LVNG 222 (228)
T ss_pred EECC
Confidence 8765
No 140
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=6.7e-12 Score=132.86 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=69.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
++..|||||++|++||++++.. |+++||||||+|||+.++..+.++|+++.+ +..+|+|||++.. ..+||+++.
T Consensus 125 ~~~~LS~G~~qrl~la~al~~~----p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 125 RVEELSKGNQQKVQFIAAVIHD----PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred cHhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 5678999999999999999976 899999999999999999999999988753 6799999999655 478999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..+
T Consensus 201 l~~g 204 (210)
T cd03269 201 LNKG 204 (210)
T ss_pred EeCC
Confidence 9765
No 141
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=7.2e-12 Score=133.60 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=70.0
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
++..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++.+ +..+|+|||+... ..+||+++
T Consensus 128 ~~~~LS~G~~qr~~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~ 203 (220)
T cd03265 128 LVKTYSGGMRRRLEIARSLVHR----PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVA 203 (220)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 5679999999999999999866 899999999999999999999999988753 5799999999654 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 204 ~l~~G~ 209 (220)
T cd03265 204 IIDHGR 209 (220)
T ss_pred EEeCCE
Confidence 997763
No 142
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=7.7e-12 Score=135.84 Aligned_cols=77 Identities=23% Similarity=0.210 Sum_probs=69.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhH-HHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++. .+..+|+|||++.. ..+||+++
T Consensus 125 ~~~~LSgGq~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 125 YIWQLSGGQRQRVGIARALAAN----PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 5678999999999999999865 89999999999999999999999999873 36899999999655 57899999
Q ss_pred EEEe
Q 000833 1238 GIYK 1241 (1263)
Q Consensus 1238 ~v~~ 1241 (1263)
.+..
T Consensus 201 ~l~~ 204 (255)
T PRK11248 201 LLSP 204 (255)
T ss_pred EEeC
Confidence 9975
No 143
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=9.7e-12 Score=127.32 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=66.9
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-HhcceeEEEEe
Q 000833 1165 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRLVGIYK 1241 (1263)
Q Consensus 1165 lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~~~v~~ 1241 (1263)
|||||+++++||++++.. |+++|||||++|||+.++..+.++|.++.+ +.++|+|||++... .+||+++.+..
T Consensus 101 lS~G~~qr~~la~al~~~----p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 176 (178)
T cd03229 101 LSGGQQQRVALARALAMD----PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD 176 (178)
T ss_pred CCHHHHHHHHHHHHHHCC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence 999999999999999976 999999999999999999999999998765 48999999997665 48999998875
Q ss_pred c
Q 000833 1242 T 1242 (1263)
Q Consensus 1242 ~ 1242 (1263)
+
T Consensus 177 g 177 (178)
T cd03229 177 G 177 (178)
T ss_pred C
Confidence 4
No 144
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=7.3e-12 Score=132.67 Aligned_cols=79 Identities=27% Similarity=0.259 Sum_probs=70.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+... ..+||+++
T Consensus 125 ~~~~LS~G~~qrv~ia~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~ 200 (211)
T cd03298 125 LPGELSGGERQRVALARVLVRD----KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVV 200 (211)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEE
Confidence 4568999999999999999865 899999999999999999999999998753 6899999999765 47899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 201 ~l~~G~ 206 (211)
T cd03298 201 FLDNGR 206 (211)
T ss_pred EEECCE
Confidence 998763
No 145
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=9.4e-12 Score=137.73 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..||||||++++||.+|+.. |+++||||||+|||+..+..+.++|.++.+ +.++|+|||+... ..+||+++
T Consensus 140 ~~~~~LSgGqkqrvaiA~aL~~~----p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 140 KSPFELSGGQMRRVAIAGILAME----PEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC----CCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 45779999999999999999987 999999999999999999999999988754 7899999999764 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 216 ~l~~G~ 221 (288)
T PRK13643 216 LLEKGH 221 (288)
T ss_pred EEECCE
Confidence 998864
No 146
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=7.6e-12 Score=132.78 Aligned_cols=79 Identities=30% Similarity=0.242 Sum_probs=70.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+... ..+||+++
T Consensus 128 ~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 203 (214)
T cd03297 128 YPAQLSGGEKQRVALARALAAQ----PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIV 203 (214)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEE
Confidence 5678999999999999999866 899999999999999999999999998753 6799999999754 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 204 ~l~~G~ 209 (214)
T cd03297 204 VMEDGR 209 (214)
T ss_pred EEECCE
Confidence 998763
No 147
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.28 E-value=8.1e-12 Score=134.64 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=71.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch-hHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN-NMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~-~~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|+++.. +..+|+|||++ .+..+||+++
T Consensus 129 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~ 204 (232)
T cd03218 129 SKASSLSGGERRRVEIARALATN----PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAY 204 (232)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 35679999999999999999976 999999999999999999999999988764 67999999996 5678899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 205 ~l~~G~ 210 (232)
T cd03218 205 IIYEGK 210 (232)
T ss_pred EEECCe
Confidence 998764
No 148
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.28 E-value=8.3e-12 Score=134.63 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++. .+.++|+|||++..+..||+++
T Consensus 128 ~~~~~LS~G~~qrl~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~ 203 (236)
T TIGR03864 128 DKVRELNGGHRRRVEIARALLHR----PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLV 203 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEE
Confidence 35678999999999999999966 89999999999999999999999999876 3689999999987777799999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 204 ~l~~G~ 209 (236)
T TIGR03864 204 VLHRGR 209 (236)
T ss_pred EEeCCe
Confidence 998653
No 149
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=8.7e-12 Score=139.63 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=72.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||+||++||++|+.. |+++|+||||++||..++..+.++|.++.. +..+|+|||+..++ .+||++
T Consensus 150 ~~p~~LSgGq~QRv~iArAL~~~----P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 150 RYPHMFSGGQRQRIAIARALMLD----PDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred CCCccCCHHHHHHHHHHHHHHcC----CCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 35779999999999999999977 899999999999999999999999998754 78999999997666 589999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.++.|.
T Consensus 226 ~vm~~G~ 232 (327)
T PRK11308 226 MVMYLGR 232 (327)
T ss_pred EEEECCE
Confidence 9999874
No 150
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.28 E-value=7e-12 Score=133.71 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=70.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++. +..+||+++
T Consensus 132 ~~~~~LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~ 207 (218)
T cd03266 132 RRVGGFSTGMRQKVAIARALVHD----PPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVV 207 (218)
T ss_pred hhhhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEE
Confidence 35779999999999999999866 899999999999999999999999998753 689999999965 457899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 208 ~l~~G 212 (218)
T cd03266 208 VLHRG 212 (218)
T ss_pred EEECC
Confidence 99765
No 151
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=9.9e-12 Score=135.76 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=71.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..|||||+++++||..++.. |+++||||||+|||+..+..+.++|+++..+.++|+|||+... ..+||+++.
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~ 220 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVE----PEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAF 220 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEE
Confidence 35678999999999999999865 8999999999999999999999999988667899999999755 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 221 l~~G~ 225 (253)
T PRK14242 221 FYMGK 225 (253)
T ss_pred EECCE
Confidence 98764
No 152
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.28 E-value=9.4e-12 Score=135.26 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|+++.++..+|+|||++. +..+||+++.
T Consensus 140 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~ 215 (247)
T TIGR00972 140 DSALGLSGGQQQRLCIARALAVE----PEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAF 215 (247)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEE
Confidence 45779999999999999999965 899999999999999999999999998876689999999976 4578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 216 l~~G~ 220 (247)
T TIGR00972 216 FYDGE 220 (247)
T ss_pred EECCE
Confidence 98764
No 153
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.28 E-value=7.4e-12 Score=136.03 Aligned_cols=79 Identities=30% Similarity=0.368 Sum_probs=70.5
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-HhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
++..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+...+ .+||+++
T Consensus 142 ~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~ 217 (243)
T TIGR02315 142 RADQLSGGQQQRVAIARALAQQ----PDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV 217 (243)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence 5678999999999999999966 899999999999999999999999998753 67999999997654 7899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 218 ~l~~G~ 223 (243)
T TIGR02315 218 GLKAGE 223 (243)
T ss_pred EEECCE
Confidence 998764
No 154
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=8.2e-12 Score=137.64 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=72.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +.++|+|||+...+..||+++
T Consensus 136 ~~~~~LSgGq~qrv~lAral~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~ 211 (279)
T PRK13650 136 REPARLSGGQKQRVAIAGAVAMR----PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVL 211 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE
Confidence 35679999999999999999977 999999999999999999999999998763 689999999976667899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 212 ~l~~G~ 217 (279)
T PRK13650 212 VMKNGQ 217 (279)
T ss_pred EEECCE
Confidence 998764
No 155
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.28 E-value=9.9e-12 Score=134.84 Aligned_cols=80 Identities=14% Similarity=0.229 Sum_probs=71.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+..+..+.++|+++..+..+|+|||+...+ .+||+++.
T Consensus 139 ~~~~~LS~Ge~qrv~laral~~~----p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~ 214 (242)
T TIGR03411 139 RLAGLLSHGQKQWLEIGMLLMQD----PKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTV 214 (242)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 35678999999999999999876 89999999999999999999999999887678999999996654 68999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 215 l~~g~ 219 (242)
T TIGR03411 215 LHQGS 219 (242)
T ss_pred EECCe
Confidence 98764
No 156
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.28 E-value=8e-12 Score=133.48 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=71.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~v 1239 (1263)
++..|||||+++++||++|+.. |+++||||||+|||+.+...+.++|.++.++..+|+|||++..+ .+||+++.+
T Consensus 130 ~~~~LS~G~~qrv~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l 205 (220)
T cd03263 130 RARTLSGGMKRKLSLAIALIGG----PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIM 205 (220)
T ss_pred hhhhCCHHHHHHHHHHHHHhcC----CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 5678999999999999999865 89999999999999999999999999887778999999997655 689999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 206 ~~g~ 209 (220)
T cd03263 206 SDGK 209 (220)
T ss_pred ECCE
Confidence 7763
No 157
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.28 E-value=8.1e-12 Score=137.31 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=72.1
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-C-CeEEEEEcch-hHHHhcce
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-D-AQFIIISLRN-NMFELADR 1235 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~-~q~i~ith~~-~~~~~ad~ 1235 (1263)
.+.+..||||+|+|++||..|+.. |+++||||||+||||..+..+.++|+.++. + ..++++||.+ .+..+||+
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~~----P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLHD----PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhcC----CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE
Confidence 346889999999999999999876 899999999999999999999999999886 3 6899999995 55567999
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
++.+..|.
T Consensus 207 v~il~~G~ 214 (293)
T COG1131 207 VIILNDGK 214 (293)
T ss_pred EEEEeCCE
Confidence 99999884
No 158
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=3.8e-12 Score=126.51 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=74.6
Q ss_pred CccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHH-Hh
Q 000833 1156 KKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMF-EL 1232 (1263)
Q Consensus 1156 ~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~-~~ 1232 (1263)
.+.++....|||||+|||+||.+|+-. |.+++-|||+|+|||.+.+.++++|++.. .+.++|+..|.-.++ .+
T Consensus 139 ~~A~qra~~LSGGQQQRVaIARaL~Q~----pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y 214 (258)
T COG3638 139 DKAYQRASTLSGGQQQRVAIARALVQQ----PKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKY 214 (258)
T ss_pred HHHHHHhccCCcchhHHHHHHHHHhcC----CCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHH
Confidence 455677889999999999999999866 88999999999999999999999999876 378999999996665 79
Q ss_pred cceeEEEEecC
Q 000833 1233 ADRLVGIYKTD 1243 (1263)
Q Consensus 1233 ad~~~~v~~~~ 1243 (1263)
|||+||+..|.
T Consensus 215 ~~Riigl~~G~ 225 (258)
T COG3638 215 ADRIIGLKAGR 225 (258)
T ss_pred HhhheEecCCc
Confidence 99999999874
No 159
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=9.2e-12 Score=140.24 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=72.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||+||++||.+|+.. |+++||||||++||+..+..+.++|+++.. +..+|+|||+...+ .+||++
T Consensus 154 ~~p~~LSgG~~QRv~iArAL~~~----P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 154 SFPYELTEGECQKVMIAIALANQ----PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred CCchhCCHHHHHHHHHHHHHHCC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 45779999999999999999977 899999999999999999999999998764 68999999996555 789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.++.|.
T Consensus 230 ~vm~~G~ 236 (330)
T PRK15093 230 NVLYCGQ 236 (330)
T ss_pred EEEECCE
Confidence 9998874
No 160
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.28 E-value=1.3e-11 Score=123.99 Aligned_cols=75 Identities=29% Similarity=0.378 Sum_probs=67.7
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeEEEEe
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLVGIYK 1241 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~~v~~ 1241 (1263)
+|||||+++++||.+++.. |+++||||||++||+.++..+.++|+++.. +..+|++||+.. +..+||+++.+..
T Consensus 82 qLS~G~~qrl~laral~~~----p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~ 157 (163)
T cd03216 82 QLSVGERQMVEIARALARN----ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRD 157 (163)
T ss_pred ecCHHHHHHHHHHHHHhcC----CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4999999999999999866 899999999999999999999999998753 689999999975 5678999999976
Q ss_pred c
Q 000833 1242 T 1242 (1263)
Q Consensus 1242 ~ 1242 (1263)
+
T Consensus 158 g 158 (163)
T cd03216 158 G 158 (163)
T ss_pred C
Confidence 5
No 161
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=1.1e-11 Score=126.12 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=67.0
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeEEEEec
Q 000833 1165 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLVGIYKT 1242 (1263)
Q Consensus 1165 lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~~v~~~ 1242 (1263)
|||||++|++||.+++.. |+++||||||++||+.++..+.++|.++.+ +.++|+|||++..+ .+||+++.+..+
T Consensus 96 LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g 171 (173)
T cd03230 96 LSGGMKQRLALAQALLHD----PELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNG 171 (173)
T ss_pred cCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999966 999999999999999999999999998754 58999999997655 589999998765
No 162
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=8.9e-12 Score=134.33 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=70.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++.. ..+||++
T Consensus 136 ~~~~~LS~G~~qrv~la~al~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i 211 (233)
T cd03258 136 AYPAQLSGGQKQRVGIARALANN----PKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211 (233)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 35678999999999999999865 899999999999999999999999998753 6899999999765 4789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 212 ~~l~~G~ 218 (233)
T cd03258 212 AVMEKGE 218 (233)
T ss_pred EEEECCE
Confidence 9997653
No 163
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.28 E-value=9.3e-12 Score=140.60 Aligned_cols=80 Identities=24% Similarity=0.350 Sum_probs=72.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+++..|||||++|++||++|+.. |+++|||||++|||+..+..+.+.|+++.+ +.++|+|||+.. ++.+||++
T Consensus 132 ~~~~~LSgGq~QRvalArAL~~~----P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri 207 (353)
T PRK10851 132 RYPAQLSGGQKQRVALARALAVE----PQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRV 207 (353)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46789999999999999999876 899999999999999999999999998764 679999999964 57899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 208 ~vl~~G~ 214 (353)
T PRK10851 208 VVMSQGN 214 (353)
T ss_pred EEEECCE
Confidence 9998764
No 164
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=1.1e-11 Score=138.47 Aligned_cols=80 Identities=24% Similarity=0.362 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+.+..|||||++|++||.+|+.. |+++||||||+|||+..+..+.++|.++. .+.++|+|||+.. +..+||+++
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~----p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQ----PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 35678999999999999999977 99999999999999999999999998875 4789999999976 457899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 248 vl~~G~ 253 (320)
T PRK13631 248 VMDKGK 253 (320)
T ss_pred EEECCE
Confidence 998874
No 165
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.27 E-value=9.3e-12 Score=141.17 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=72.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcch-hHHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRN-NMFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~-~~~~~ad~~ 1236 (1263)
+.+..|||||++|++||++|+.. |++++||||+++||...+..+...|+++.+ +.++|+|||++ .++.+||++
T Consensus 140 ~~p~~LSgGq~QRVaLARaL~~~----P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri 215 (375)
T PRK09452 140 RKPHQLSGGQQQRVAIARAVVNK----PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215 (375)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45779999999999999999976 899999999999999999999999998754 68999999995 467899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 216 ~vl~~G~ 222 (375)
T PRK09452 216 VVMRDGR 222 (375)
T ss_pred EEEECCE
Confidence 9998764
No 166
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.27 E-value=1.2e-11 Score=131.82 Aligned_cols=79 Identities=22% Similarity=0.217 Sum_probs=69.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+..+..+.++|.++.. +.++|+|||++.. ..+||+++
T Consensus 138 ~~~~~LSgG~~qrv~laral~~~----p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~ 213 (224)
T cd03220 138 LPVKTYSSGMKARLAFAIATALE----PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRAL 213 (224)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 35678999999999999999865 899999999999999999999999988754 5899999999655 56899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..+
T Consensus 214 ~l~~G 218 (224)
T cd03220 214 VLEKG 218 (224)
T ss_pred EEECC
Confidence 99765
No 167
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.27 E-value=1.1e-11 Score=135.23 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+... ..+||+++
T Consensus 140 ~~~~~LS~Gq~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~ 215 (250)
T PRK11264 140 SYPRRLSGGQQQRVAIARALAMR----PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI 215 (250)
T ss_pred CChhhCChHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 35779999999999999999966 899999999999999999999999988764 6899999999655 47899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 216 ~l~~G~ 221 (250)
T PRK11264 216 FMDQGR 221 (250)
T ss_pred EEECCE
Confidence 998763
No 168
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=9.4e-12 Score=136.51 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=70.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||.+++.. |+++||||||+|||+..+..+.++|.++.+ +..+|+|||+.. +..+||++
T Consensus 156 ~~~~~LS~Gq~qrv~lAral~~~----p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 156 KYPDELSGGMQQRVGLARALAVD----PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 35678999999999999999966 899999999999999999999999988753 689999999965 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 232 ~~l~~G~ 238 (269)
T cd03294 232 AIMKDGR 238 (269)
T ss_pred EEEECCE
Confidence 9998763
No 169
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1e-11 Score=136.75 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=71.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+++..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+...+ .+||+++
T Consensus 132 ~~~~~LSgG~~qrl~laraL~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~ 207 (271)
T PRK13638 132 QPIQCLSHGQKKRVAIAGALVLQ----ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVY 207 (271)
T ss_pred CCchhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 35679999999999999999976 999999999999999999999999998753 67999999996554 7899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 208 ~l~~G~ 213 (271)
T PRK13638 208 VLRQGQ 213 (271)
T ss_pred EEECCE
Confidence 998764
No 170
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.1e-11 Score=133.40 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=68.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++. .+..+|+|||+...+..+|+++.
T Consensus 142 ~~~~LSgG~~qrl~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~ 217 (233)
T PRK11629 142 RPSELSGGERQRVAIARALVNN----PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLE 217 (233)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEE
Confidence 4678999999999999999976 89999999999999999999999999874 36899999999877777788877
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 218 l~~G 221 (233)
T PRK11629 218 MRDG 221 (233)
T ss_pred EECC
Confidence 7654
No 171
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.27 E-value=9e-12 Score=132.31 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=69.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+++..|||||+++++||++++.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||++. +..+||++
T Consensus 126 ~~~~~LS~G~~qr~~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i 201 (213)
T cd03301 126 RKPKQLSGGQRQRVALGRAIVRE----PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI 201 (213)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 35678999999999999999865 899999999999999999999999998753 689999999965 45789999
Q ss_pred EEEEec
Q 000833 1237 VGIYKT 1242 (1263)
Q Consensus 1237 ~~v~~~ 1242 (1263)
+.+..+
T Consensus 202 ~~l~~g 207 (213)
T cd03301 202 AVMNDG 207 (213)
T ss_pred EEEECC
Confidence 998765
No 172
>PRK10908 cell division protein FtsE; Provisional
Probab=99.27 E-value=1.1e-11 Score=132.52 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=70.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++... .+||+++.
T Consensus 134 ~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 209 (222)
T PRK10908 134 FPIQLSGGEQQRVGIARAVVNK----PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLT 209 (222)
T ss_pred CchhCCHHHHHHHHHHHHHHcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5678999999999999999966 899999999999999999999999998754 68999999997654 67999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..+.
T Consensus 210 l~~G~ 214 (222)
T PRK10908 210 LSDGH 214 (222)
T ss_pred EECCE
Confidence 98764
No 173
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1e-11 Score=136.42 Aligned_cols=80 Identities=23% Similarity=0.234 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+.+..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|.++.. +.++|+|||+...+ .+||+++
T Consensus 134 ~~~~~LSgG~~qrv~laraL~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~ 209 (274)
T PRK13647 134 KPPYHLSYGQKKRVAIAGVLAMD----PDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVI 209 (274)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 35679999999999999999977 999999999999999999999999998754 78999999997654 7899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 210 ~l~~G~ 215 (274)
T PRK13647 210 VLKEGR 215 (274)
T ss_pred EEECCE
Confidence 998764
No 174
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=135.14 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=71.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++..+..+|+|||++.. ..+||+++.
T Consensus 146 ~~~~~LSgG~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~ 221 (254)
T PRK14273 146 TNALSLSGGQQQRLCIARTLAIE----PNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAF 221 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 35779999999999999999865 8999999999999999999999999988767899999999765 478999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 222 l~~G~ 226 (254)
T PRK14273 222 FLNGC 226 (254)
T ss_pred EECCE
Confidence 98764
No 175
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=9.8e-12 Score=140.07 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=72.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcch-hHHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRN-NMFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~-~~~~~ad~~ 1236 (1263)
+.+..|||||+||++||++|+.. |++++||||+++||+..+..+...|+++.+ +..+|+|||+. .++.+||++
T Consensus 132 r~~~~LSgGq~QRVaLARaL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i 207 (351)
T PRK11432 132 RYVDQISGGQQQRVALARALILK----PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTV 207 (351)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 45779999999999999999977 899999999999999999999999998754 68999999996 556899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 208 ~vm~~G~ 214 (351)
T PRK11432 208 IVMNKGK 214 (351)
T ss_pred EEEECCE
Confidence 9998764
No 176
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.27 E-value=1e-11 Score=133.16 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+++..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+...+ .+||++
T Consensus 121 ~~~~~LS~G~~qrv~laral~~~----p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 196 (230)
T TIGR02770 121 KYPFQLSGGMLQRVMIALALLLE----PPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEV 196 (230)
T ss_pred CChhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35678999999999999999866 899999999999999999999999998753 67999999996554 689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 197 ~~l~~G~ 203 (230)
T TIGR02770 197 AVMDDGR 203 (230)
T ss_pred EEEECCE
Confidence 9998764
No 177
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=1.3e-11 Score=132.71 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=72.0
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|..+..+.++|+|||++..+..||+++.+.
T Consensus 136 ~~~~LS~G~~~rv~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~ 211 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLRD----PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLD 211 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEe
Confidence 4678999999999999999866 999999999999999999999999998876789999999987777899999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.+.
T Consensus 212 ~g~ 214 (229)
T cd03254 212 DGK 214 (229)
T ss_pred CCe
Confidence 764
No 178
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.2e-11 Score=136.88 Aligned_cols=80 Identities=25% Similarity=0.291 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+.. +..+||+++
T Consensus 141 ~~~~~LSgGq~qrl~laral~~~----p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~ 216 (287)
T PRK13641 141 KSPFELSGGQMRRVAIAGVMAYE----PEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVL 216 (287)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 46779999999999999999976 899999999999999999999999998753 789999999965 457999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 217 ~l~~G~ 222 (287)
T PRK13641 217 VLEHGK 222 (287)
T ss_pred EEECCE
Confidence 998764
No 179
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.27 E-value=6.9e-12 Score=132.37 Aligned_cols=78 Identities=28% Similarity=0.511 Sum_probs=58.8
Q ss_pred eEEEEEEecCccccCCCcccccCCCc----ceEEEcCCCCChhHHHHHHHHHc-CcchhhhhhhcccccccccccCCCCC
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKS----FSAVVGPNGSGKSNVIDAMLFVF-GKRAKQMRLNKVSELIHNSTNYQNLD 94 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~----~~~i~G~nGsGKS~i~~ai~~~l-g~~~~~~r~~~~~~~i~~g~~~~~~~ 94 (1263)
|++++|+++||+||.+.+.+ +|.++ +++|+||||||||||++||.|+| |......+.....+.+..+ ..
T Consensus 1 m~~~~i~l~nf~~y~~~~~i-~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~-----~~ 74 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVI-DFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPG-----ED 74 (213)
T ss_pred CEEEEEEEECCcCcCCceEE-eCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCC-----Cc
Confidence 89999999999999887666 57544 99999999999999999999976 4444333322233444433 56
Q ss_pred ceEEEEEEe
Q 000833 95 SAGVSVHFQ 103 (1263)
Q Consensus 95 ~a~v~~~~~ 103 (1263)
.+.|.++|+
T Consensus 75 ~~~v~~~f~ 83 (213)
T cd03279 75 TAEVSFTFQ 83 (213)
T ss_pred cEEEEEEEE
Confidence 788999984
No 180
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.2e-11 Score=137.14 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=71.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+++..|||||++|++||.+|+.. |+++||||||+|||+..+..+.++|.++.. +.++|+|||+.. +..+||++
T Consensus 141 ~~~~~LSgGq~qrv~lAraL~~~----P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 141 RSPFELSGGQMRRVAIAGVLAME----PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46779999999999999999976 999999999999999999999999998753 689999999965 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 217 ~~l~~G~ 223 (290)
T PRK13634 217 VVMHKGT 223 (290)
T ss_pred EEEECCE
Confidence 9998764
No 181
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.27 E-value=1.1e-11 Score=136.28 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=70.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcch-hHHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRN-NMFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~-~~~~~ad~~ 1236 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++.+ +..+|+|||+. .+..+||++
T Consensus 139 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v 214 (269)
T PRK11831 139 LMPSELSGGMARRAALARAIALE----PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHA 214 (269)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEE
Confidence 35679999999999999999866 899999999999999999999999998753 68999999995 456789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 215 ~~l~~G~ 221 (269)
T PRK11831 215 YIVADKK 221 (269)
T ss_pred EEEECCE
Confidence 9997653
No 182
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.27 E-value=1.2e-11 Score=139.04 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||++|+.. |+++|||||++|||+.++..+.++|.++.. +..+|+|||+.. +..+||++
T Consensus 96 ~~~~~LSgGq~qRvalaraL~~~----p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i 171 (325)
T TIGR01187 96 RKPHQLSGGQQQRVALARALVFK----PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171 (325)
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999999999976 899999999999999999999999988753 689999999964 56789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 172 ~vl~~G~ 178 (325)
T TIGR01187 172 AIMRKGK 178 (325)
T ss_pred EEEECCE
Confidence 9998764
No 183
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.27 E-value=6.3e-12 Score=133.51 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=75.1
Q ss_pred ccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhc
Q 000833 1157 KSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELA 1233 (1263)
Q Consensus 1157 ~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~a 1233 (1263)
..++.++.+|||||||+|||.++++. |.|++|||||++||......+.++|+.+.+ +.-++||||+..+. ++|
T Consensus 419 ~r~RYPhEFSGGQRQRIAIARAliLk----P~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~ 494 (534)
T COG4172 419 TRNRYPHEFSGGQRQRIAIARALILK----PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALC 494 (534)
T ss_pred HhhcCCcccCcchhhHHHHHHHHhcC----CcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhh
Confidence 45678999999999999999999998 889999999999999999999999998764 67899999997665 789
Q ss_pred ceeEEEEecC
Q 000833 1234 DRLVGIYKTD 1243 (1263)
Q Consensus 1234 d~~~~v~~~~ 1243 (1263)
|+++.+..|.
T Consensus 495 ~~viVm~~Gk 504 (534)
T COG4172 495 HRVIVMRDGK 504 (534)
T ss_pred ceEEEEeCCE
Confidence 9999999874
No 184
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.1e-11 Score=133.81 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=71.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch-hHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN-NMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~-~~~~~ad~~~~ 1238 (1263)
++..|||||+++++||++++.. ||++||||||+|||+..+..+.++|.++.+ +..+|+|||+. .+..+||+++.
T Consensus 134 ~~~~LS~G~~qrl~la~al~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 209 (237)
T PRK11614 134 RAGTMSGGEQQMLAIGRALMSQ----PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYV 209 (237)
T ss_pred chhhCCHHHHHHHHHHHHHHhC----CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEE
Confidence 4668999999999999999976 999999999999999999999999988754 78999999996 46789999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 210 l~~G~ 214 (237)
T PRK11614 210 LENGH 214 (237)
T ss_pred EeCCE
Confidence 98764
No 185
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.27 E-value=1.4e-11 Score=133.39 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=71.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++..+.++|++||+...+..||+++.+.
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~ 211 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRN----PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQ 211 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEE
Confidence 5678999999999999999866 899999999999999999999999988766789999999977777999999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.|.
T Consensus 212 ~G~ 214 (238)
T cd03249 212 NGQ 214 (238)
T ss_pred CCE
Confidence 764
No 186
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1e-11 Score=141.64 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=71.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||++|+.. |+++||||||++||+..+..+.++|+++.. +..+|+|||+.. +..+||++
T Consensus 129 ~~~~~LSgGq~QRvaLAraL~~~----P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i 204 (369)
T PRK11000 129 RKPKALSGGQRQRVAIGRTLVAE----PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI 204 (369)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEE
Confidence 45679999999999999999976 899999999999999999999999988753 689999999964 56899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 205 ~vl~~G~ 211 (369)
T PRK11000 205 VVLDAGR 211 (369)
T ss_pred EEEECCE
Confidence 9998763
No 187
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.26 E-value=1.1e-11 Score=131.29 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=70.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++.+ +.++|+|||+... ..+||++
T Consensus 124 ~~~~~LS~G~~qrl~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v 199 (213)
T TIGR01277 124 RLPEQLSGGQRQRVALARCLVRP----NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQI 199 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeE
Confidence 35668999999999999999865 899999999999999999999999998753 6899999999654 5789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..+.
T Consensus 200 ~~l~~g~ 206 (213)
T TIGR01277 200 AVVSQGK 206 (213)
T ss_pred EEEECCe
Confidence 9997653
No 188
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.4e-11 Score=134.60 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=71.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++..+.++|+|||+.. +..+||+++.
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATS----PKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGF 219 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEE
Confidence 35678999999999999999865 899999999999999999999999998866689999999964 5688999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 220 l~~G~ 224 (252)
T PRK14239 220 FLDGD 224 (252)
T ss_pred EECCE
Confidence 98764
No 189
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.26 E-value=7.5e-12 Score=129.12 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=75.0
Q ss_pred cccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhcc
Q 000833 1158 SWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELAD 1234 (1263)
Q Consensus 1158 ~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad 1234 (1263)
..+.++.|||||+||++||+++|+. |.|+|+|||+++||......+.++|.++.. +..++||||+..+. .+||
T Consensus 103 ~~ryPhelSGGQrQRi~IARALal~----P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 103 LYRYPHELSGGQRQRIGIARALALN----PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhcCCcccCchhhhhHHHHHHHhhC----CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3568899999999999999999998 899999999999999999999999998764 78999999997776 5799
Q ss_pred eeEEEEecC
Q 000833 1235 RLVGIYKTD 1243 (1263)
Q Consensus 1235 ~~~~v~~~~ 1243 (1263)
+++.++.|.
T Consensus 179 ri~VMy~G~ 187 (268)
T COG4608 179 RIAVMYLGK 187 (268)
T ss_pred cEEEEecCc
Confidence 999999985
No 190
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.26 E-value=1.3e-11 Score=137.53 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=72.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|..+..+.++|++||+.. +..+||+++.
T Consensus 129 ~~~~~LS~G~~qrv~la~al~~~----p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~ 204 (301)
T TIGR03522 129 KKIGQLSKGYRQRVGLAQALIHD----PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVII 204 (301)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEE
Confidence 45779999999999999999876 899999999999999999999999998877789999999965 6789999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 205 l~~G~ 209 (301)
T TIGR03522 205 INKGK 209 (301)
T ss_pred EECCE
Confidence 98763
No 191
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.5e-11 Score=134.00 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
+++..|||||++|++||++++.. |+++||||||+|||+.++..+.++|.++..+.++|+|||++..+ .+||+++.
T Consensus 142 ~~~~~LSgG~~qrv~laral~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14247 142 APAGKLSGGQQQRLCIARALAFQ----PEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAF 217 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 45678999999999999999865 89999999999999999999999999886678999999997654 78999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 218 l~~G~ 222 (250)
T PRK14247 218 LYKGQ 222 (250)
T ss_pred EECCe
Confidence 98764
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.6e-11 Score=139.80 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||++|+.. |+++||||||+|||+.++..+.++|.++. .+..+|+|||+.. +..+||++
T Consensus 160 ~~~~~LSgGq~QRv~LArAL~~~----P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 160 SYPDELSGGMRQRVGLARALAIN----PDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 45679999999999999999976 89999999999999999999999998874 3679999999964 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 236 ~vL~~G~ 242 (400)
T PRK10070 236 AIMQNGE 242 (400)
T ss_pred EEEECCE
Confidence 9998763
No 193
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.5e-11 Score=136.05 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|.++. .+.++|+|||+.. +..+||++
T Consensus 141 ~~~~~LSgGq~qrv~laraL~~~----p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 141 QSPFQMSGGQMRKIAIVSILAMN----PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC----CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 35779999999999999999987 89999999999999999999999999875 3789999999965 45799999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 217 ~~l~~G~ 223 (286)
T PRK13646 217 IVMKEGS 223 (286)
T ss_pred EEEECCE
Confidence 9998764
No 194
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.26 E-value=1.5e-11 Score=140.14 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=72.5
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-Hhccee
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
.+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|+++.+ +..+|++||+...+ .+||++
T Consensus 134 ~~~~~~LSgGerQRv~IArAL~~~----P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adri 209 (402)
T PRK09536 134 DRPVTSLSGGERQRVLLARALAQA----TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDEL 209 (402)
T ss_pred cCChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 346789999999999999999976 999999999999999999999999998864 67999999996555 789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 210 i~l~~G~ 216 (402)
T PRK09536 210 VLLADGR 216 (402)
T ss_pred EEEECCE
Confidence 9998764
No 195
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.4e-11 Score=136.86 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=71.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||++|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+.. +..+||++
T Consensus 146 ~~~~~LS~Gq~qrv~laral~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 146 RSPFELSGGQKRRVALAGIIAMD----GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 45779999999999999999976 899999999999999999999999988753 689999999965 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 222 ~~l~~G~ 228 (289)
T PRK13645 222 IVMHEGK 228 (289)
T ss_pred EEEECCE
Confidence 9998763
No 196
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.26 E-value=1.4e-11 Score=114.65 Aligned_cols=82 Identities=24% Similarity=0.350 Sum_probs=72.1
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcch-hHHHhcce
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRN-NMFELADR 1235 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~-~~~~~ad~ 1235 (1263)
.+++..|||||+|++||++-|-.. |.+++|||||++||+.|.+.|-+||..+. .+.-++.|||++ +.+..||+
T Consensus 128 ~k~it~lSGGE~QriAliR~Lq~~----P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k 203 (223)
T COG4619 128 TKNITELSGGEKQRIALIRNLQFM----PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADK 203 (223)
T ss_pred cchhhhccchHHHHHHHHHHhhcC----CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhhe
Confidence 356789999999999999988766 88999999999999999999999998876 367899999995 56899999
Q ss_pred eEEEEecCC
Q 000833 1236 LVGIYKTDN 1244 (1263)
Q Consensus 1236 ~~~v~~~~~ 1244 (1263)
.+.|..|.-
T Consensus 204 ~itl~~G~~ 212 (223)
T COG4619 204 VITLQPGHA 212 (223)
T ss_pred EEEeccCcc
Confidence 999988753
No 197
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.25 E-value=2.2e-11 Score=128.51 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=71.5
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||++|+.. |+++||||||+|||+..+..+.++|+++..+..+|+|||+......||+++.+.
T Consensus 122 ~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~ 197 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALLKR----PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMD 197 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHhhC----CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEE
Confidence 5678999999999999999866 899999999999999999999999998766789999999987766799999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.+.
T Consensus 198 ~g~ 200 (207)
T cd03369 198 AGE 200 (207)
T ss_pred CCE
Confidence 753
No 198
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=1e-11 Score=118.54 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=75.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcc-hhHHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLR-NNMFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~-~~~~~~ad~~ 1236 (1263)
+.+-+||||++||+.||.++|.. |.|++||||+++||.-.++.+-.+|-++- .+.|+++|||. ++..-+|+++
T Consensus 128 ~~i~qLSGGmrQRvGiARALa~e----P~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrL 203 (259)
T COG4525 128 KYIWQLSGGMRQRVGIARALAVE----PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRL 203 (259)
T ss_pred cceEeecchHHHHHHHHHHhhcC----cceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhhee
Confidence 46779999999999999999977 89999999999999999999999987753 48899999999 5666789999
Q ss_pred EEEEecCC-CceeEEec
Q 000833 1237 VGIYKTDN-CTKSITIN 1252 (1263)
Q Consensus 1237 ~~v~~~~~-~s~~~~~~ 1252 (1263)
+.+.-+++ +.++++++
T Consensus 204 vvlsp~pgRvv~~~~~d 220 (259)
T COG4525 204 VVLSPGPGRVVERLPLD 220 (259)
T ss_pred EEecCCCceeeEecCCC
Confidence 99998765 33334443
No 199
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.25 E-value=5.3e-12 Score=137.79 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=75.9
Q ss_pred CCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc-hhHHH
Q 000833 1155 PKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR-NNMFE 1231 (1263)
Q Consensus 1155 ~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~-~~~~~ 1231 (1263)
.+...+.+++|||||+||||||+.||.. |++++||||.++||...+..+...|+++.+ +.+||+|||+ .+.+.
T Consensus 127 ~~~~~R~p~qLSGGQqQRVALARAL~~~----P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ 202 (352)
T COG3842 127 EGFADRKPHQLSGGQQQRVALARALVPE----PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA 202 (352)
T ss_pred hhhhhhChhhhChHHHHHHHHHHHhhcC----cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh
Confidence 3445678999999999999999999977 889999999999999999999999887654 7899999999 57789
Q ss_pred hcceeEEEEecC
Q 000833 1232 LADRLVGIYKTD 1243 (1263)
Q Consensus 1232 ~ad~~~~v~~~~ 1243 (1263)
+|||+..+..|.
T Consensus 203 msDrI~Vm~~G~ 214 (352)
T COG3842 203 MSDRIAVMNDGR 214 (352)
T ss_pred hccceEEccCCc
Confidence 999999999875
No 200
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=1.7e-11 Score=132.34 Aligned_cols=79 Identities=25% Similarity=0.356 Sum_probs=72.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||.+|+.. |+++||||||+|||+..+..+.++|.++.++.++|+|||+...+..||+++.+.
T Consensus 135 ~~~~LS~G~~qrv~la~al~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~ 210 (234)
T cd03251 135 RGVKLSGGQRQRIAIARALLKD----PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLE 210 (234)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEec
Confidence 4678999999999999999976 899999999999999999999999998877889999999987777799999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.|.
T Consensus 211 ~G~ 213 (234)
T cd03251 211 DGK 213 (234)
T ss_pred CCe
Confidence 764
No 201
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.25 E-value=1.5e-11 Score=131.66 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=70.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhH-HHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++. .+.++|+|||++.. ..+||+++.
T Consensus 129 ~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (222)
T cd03224 129 LAGTLSGGEQQMLAIARALMSR----PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYV 204 (222)
T ss_pred chhhCCHHHHHHHHHHHHHhcC----CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEE
Confidence 5678999999999999999865 89999999999999999999999999876 46899999999764 678999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 205 l~~G~ 209 (222)
T cd03224 205 LERGR 209 (222)
T ss_pred eeCCe
Confidence 98653
No 202
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.25 E-value=1.9e-11 Score=129.90 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=70.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCC-CCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKP-TPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~-~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+++..|||||+++++||.+++.. | |+++||||||+|||+..+..+.++|.++. .+..+|+|||+...+.+||+++
T Consensus 133 ~~~~~LSgG~~qrv~laral~~~---p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~ 209 (226)
T cd03270 133 RSAPTLSGGEAQRIRLATQIGSG---LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVI 209 (226)
T ss_pred CccCcCCHHHHHHHHHHHHHHhC---CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEE
Confidence 46779999999999999999865 3 25999999999999999999999998875 3679999999987888999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..+.
T Consensus 210 ~l~~~~ 215 (226)
T cd03270 210 DIGPGA 215 (226)
T ss_pred EeCCCc
Confidence 995543
No 203
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.7e-11 Score=132.99 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=71.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~v 1239 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++..+.++|+|||+.. +..+||+++.+
T Consensus 139 ~~~~LS~G~~qrv~laral~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIK----PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEE
Confidence 5678999999999999999976 999999999999999999999999998876889999999966 55789999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 215 ~~G~ 218 (246)
T PRK14269 215 HLGE 218 (246)
T ss_pred ECCE
Confidence 8764
No 204
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.7e-11 Score=132.52 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|..+.+ +.++|+|||+... ..+||++
T Consensus 127 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i 202 (241)
T PRK14250 127 RDVKNLSGGEAQRVSIARTLANN----PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYT 202 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEE
Confidence 35678999999999999999865 899999999999999999999999998753 6899999999655 5789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 203 ~~l~~G~ 209 (241)
T PRK14250 203 AFLNKGI 209 (241)
T ss_pred EEEeCCE
Confidence 9998763
No 205
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.25 E-value=1.4e-11 Score=139.17 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=72.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||+||++||++|+.. |++++||||+++||+..+..+...|+++.+ +..+|+|||++. ++.+||++
T Consensus 130 ~~~~~LSgGq~QRvaLARaL~~~----P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i 205 (353)
T TIGR03265 130 KYPGQLSGGQQQRVALARALATS----PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRI 205 (353)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 46789999999999999999976 899999999999999999999999988754 689999999964 67899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 206 ~vl~~G~ 212 (353)
T TIGR03265 206 VVMNHGV 212 (353)
T ss_pred EEEECCE
Confidence 9998874
No 206
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.25 E-value=1.6e-11 Score=134.23 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=71.0
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|+++.+ +.++|+|||++..+ .+||+++.
T Consensus 149 ~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~ 224 (257)
T PRK10619 149 YPVHLSGGQQQRVSIARALAME----PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 224 (257)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 5679999999999999999976 899999999999999999999999998864 78999999997655 57999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 225 l~~G~ 229 (257)
T PRK10619 225 LHQGK 229 (257)
T ss_pred EECCE
Confidence 98764
No 207
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.25 E-value=2.4e-11 Score=118.87 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=65.2
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEEEEec
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVGIYKT 1242 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~v~~~ 1242 (1263)
+|||||+++++||+.++.. ||++|||||+++||+..+..+.++|+++ +.++|+|||++.. ..+||+++.+..+
T Consensus 70 ~lS~G~~~rv~laral~~~----p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 70 QLSGGEKMRLALAKLLLEN----PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred cCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 4999999999999999866 8999999999999999999999999877 3699999999654 4789999988654
No 208
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.8e-11 Score=134.21 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=71.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
+++..|||||++|++||++|+.. |+++||||||+|||+.++..+.++|+++..+..+|+|||+...+ .+||+++.
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVS----PEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEE
Confidence 35678999999999999999876 89999999999999999999999999887678999999996554 78999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 235 l~~G~ 239 (267)
T PRK14235 235 FHLGN 239 (267)
T ss_pred EECCE
Confidence 98763
No 209
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.25 E-value=1.4e-11 Score=130.24 Aligned_cols=75 Identities=29% Similarity=0.378 Sum_probs=67.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
.+..|||||+++++||.+|+.. |+++||||||+|||+..+..+.++|+++.. +..+|+|||++.+..+||+++.+
T Consensus 131 ~~~~lS~G~~qr~~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 131 KIYELSGGEQQRVALARAILKD----PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred ChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 4678999999999999999965 899999999999999999999999998754 68999999998888899998753
No 210
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.4e-11 Score=132.41 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++.+ +.++|+|||++.. ..+||++
T Consensus 125 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 200 (232)
T PRK10771 125 RLPGQLSGGQRQRVALARCLVRE----QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS 200 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 35678999999999999999866 899999999999999999999999998753 6799999999765 5789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..+.
T Consensus 201 ~~l~~g~ 207 (232)
T PRK10771 201 LVVADGR 207 (232)
T ss_pred EEEECCE
Confidence 9998753
No 211
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.9e-11 Score=134.15 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=70.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+++..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++..+..+|+|||++. +..+||+++.
T Consensus 150 ~~~~~LS~G~~qrl~laral~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 150 ESGYSLSGGQQQRLCIARTIAIE----PEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 35678999999999999999866 899999999999999999999999998866789999999964 5689999999
Q ss_pred EEe
Q 000833 1239 IYK 1241 (1263)
Q Consensus 1239 v~~ 1241 (1263)
+..
T Consensus 226 l~~ 228 (269)
T PRK14259 226 FNA 228 (269)
T ss_pred Eec
Confidence 986
No 212
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=1.4e-11 Score=133.46 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=71.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++. +..+||++
T Consensus 131 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i 206 (242)
T cd03295 131 RYPHELSGGQQQRVGVARALAAD----PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRI 206 (242)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEE
Confidence 45678999999999999999865 899999999999999999999999998753 689999999976 46789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 207 ~~l~~G~ 213 (242)
T cd03295 207 AIMKNGE 213 (242)
T ss_pred EEEECCE
Confidence 9998764
No 213
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=1.6e-11 Score=119.25 Aligned_cols=89 Identities=24% Similarity=0.280 Sum_probs=76.9
Q ss_pred CCccccccccCChhHHHHHHHHHHHH-hccCCCCC-eEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-
Q 000833 1155 PKKSWKNIANLSGGEKTLSSLALVFA-LHHYKPTP-LYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF- 1230 (1263)
Q Consensus 1155 ~~~~~~~~~~lSGGek~~~~la~~~a-~~~~~~~p-~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~- 1230 (1263)
.+...+....|||||+|||.||+.|| +|...|.+ .++|||||++||..+...+..+.+.+.+ +.-+++|-|+.+++
T Consensus 126 ~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA 205 (259)
T COG4559 126 SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAA 205 (259)
T ss_pred hhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHH
Confidence 44556778899999999999999999 45555556 8899999999999999999999999875 78999999997765
Q ss_pred HhcceeEEEEecC
Q 000833 1231 ELADRLVGIYKTD 1243 (1263)
Q Consensus 1231 ~~ad~~~~v~~~~ 1243 (1263)
.+||+++.+..|.
T Consensus 206 ~YaDrivll~~Gr 218 (259)
T COG4559 206 QYADRIVLLHQGR 218 (259)
T ss_pred HhhheeeeeeCCe
Confidence 6899999999885
No 214
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.25 E-value=1.5e-11 Score=113.16 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=69.4
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-Hhccee
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
++.+-.||||+++|||||+++.+. |.+++||||||+|||.....+.++|++++. +.+-++|||.-.++ ..|.++
T Consensus 136 dr~plhlsggqqqrvaiaralmmk----pqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~v 211 (242)
T COG4161 136 DRYPLHLSGGQQQRVAIARALMME----PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred ccCceecccchhhhHHHHHHHhcC----CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhhe
Confidence 344568999999999999999877 889999999999999999999999999975 55667899998777 468888
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+-+..|.
T Consensus 212 vyme~g~ 218 (242)
T COG4161 212 VYMENGH 218 (242)
T ss_pred EeeecCe
Confidence 7777664
No 215
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.25 E-value=1.6e-11 Score=132.98 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=70.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+|+.. ||++||||||+|||+.++..+.++|.++.+ +..+|+|||+.... .+||+++.
T Consensus 133 ~~~~LS~G~~qrv~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 208 (240)
T PRK09493 133 YPSELSGGQQQRVAIARALAVK----PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIF 208 (240)
T ss_pred ChhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5678999999999999999865 899999999999999999999999988754 68999999996554 78999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 209 l~~G~ 213 (240)
T PRK09493 209 IDKGR 213 (240)
T ss_pred EECCE
Confidence 98763
No 216
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.7e-11 Score=135.40 Aligned_cols=80 Identities=24% Similarity=0.237 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+++..|||||+++++||.+++.. ||++||||||+|||+.++..+.++|.++.+ +..+|+|||+...+ .+||++
T Consensus 137 ~~~~~LS~G~~qrl~laraL~~~----p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri 212 (283)
T PRK13636 137 KPTHCLSFGQKKRVAIAGVLVME----PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNV 212 (283)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 46789999999999999999876 999999999999999999999999998764 68999999997655 689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 213 ~~l~~G~ 219 (283)
T PRK13636 213 FVMKEGR 219 (283)
T ss_pred EEEECCE
Confidence 9998764
No 217
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2e-11 Score=133.70 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++..+.++|+|||+... ..+||+++.
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~ 226 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATN----PDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAF 226 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEE
Confidence 35678999999999999999976 8999999999999999999999999988767899999999654 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 227 l~~G~ 231 (259)
T PRK14274 227 FYMGE 231 (259)
T ss_pred EECCE
Confidence 98763
No 218
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.25 E-value=2e-11 Score=130.34 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+++..|||||+++++||..++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+......||+++
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~ 208 (225)
T PRK10247 133 KNIAELSGGEKQRISLIRNLQFM----PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVI 208 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEE
Confidence 35779999999999999999966 999999999999999999999999998753 679999999987777899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+.+..
T Consensus 209 ~l~~~~ 214 (225)
T PRK10247 209 TLQPHA 214 (225)
T ss_pred EEeccc
Confidence 997543
No 219
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.9e-11 Score=133.16 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=71.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~v 1239 (1263)
++..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++.++.++|+|||+... ..+||+++.+
T Consensus 144 ~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIAVK----PDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEE
Confidence 5678999999999999999865 8999999999999999999999999988767899999999754 6789999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 220 ~~G~ 223 (251)
T PRK14270 220 LMGD 223 (251)
T ss_pred ECCe
Confidence 8764
No 220
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.24 E-value=1.7e-11 Score=139.62 Aligned_cols=80 Identities=26% Similarity=0.270 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||++|+.. |+++||||||+|||+..+..+.++|+++.. +..+|+|||+.. +..+||++
T Consensus 127 ~~~~~LSgGqkqRvalAraL~~~----p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i 202 (354)
T TIGR02142 127 RLPGRLSGGEKQRVAIGRALLSS----PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRV 202 (354)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 45679999999999999999976 899999999999999999999999998754 678999999965 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 203 ~~l~~G~ 209 (354)
T TIGR02142 203 VVLEDGR 209 (354)
T ss_pred EEEeCCE
Confidence 9998764
No 221
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.24 E-value=1.7e-11 Score=131.82 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=70.0
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++.. ..+||+++
T Consensus 150 ~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 225 (236)
T cd03267 150 PVRQLSLGQRMRAEIAAALLHE----PEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE
Confidence 4678999999999999999976 899999999999999999999999998753 6799999999765 57899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..+
T Consensus 226 ~l~~G 230 (236)
T cd03267 226 VIDKG 230 (236)
T ss_pred EEeCC
Confidence 99765
No 222
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.2e-11 Score=132.65 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
.++..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.++.++|+|||++.. ..+||+++.
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~ 216 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAME----PDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAF 216 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEE
Confidence 35678999999999999999866 8999999999999999999999999998767899999999654 678999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 217 l~~G~ 221 (249)
T PRK14253 217 FLMGE 221 (249)
T ss_pred EECCE
Confidence 98764
No 223
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.24 E-value=2.6e-11 Score=121.85 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=67.5
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-HhcceeEEEEe
Q 000833 1165 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRLVGIYK 1241 (1263)
Q Consensus 1165 lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~~~v~~ 1241 (1263)
|||||+++++||++++.. |++++|||||++||+.++..+.++|.++.. +..+|+|||+.... .+||+++.+..
T Consensus 72 LSgGq~qrv~laral~~~----p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 147 (177)
T cd03222 72 LSGGELQRVAIAAALLRN----ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147 (177)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcC
Confidence 999999999999999976 899999999999999999999999988753 37999999997654 58999999987
Q ss_pred cCC
Q 000833 1242 TDN 1244 (1263)
Q Consensus 1242 ~~~ 1244 (1263)
+.+
T Consensus 148 ~~~ 150 (177)
T cd03222 148 EPG 150 (177)
T ss_pred CCc
Confidence 654
No 224
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.9e-11 Score=133.51 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=71.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++..+..+|+|||++.. ..+||+++.
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~ 220 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMK----PKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAF 220 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEE
Confidence 35779999999999999999865 8999999999999999999999999988667899999999765 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 221 l~~G~ 225 (253)
T PRK14267 221 LYLGK 225 (253)
T ss_pred EECCE
Confidence 98763
No 225
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.7e-11 Score=133.86 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=71.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||.+++.. ||++||||||+|||+.++..+.++|.++.. +..+|+|||++. +..+||+++
T Consensus 134 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~ 209 (255)
T PRK11231 134 RRLTDLSGGQRQRAFLAMVLAQD----TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLV 209 (255)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEE
Confidence 35679999999999999999976 899999999999999999999999988754 689999999966 467999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 210 ~l~~G~ 215 (255)
T PRK11231 210 VLANGH 215 (255)
T ss_pred EEECCe
Confidence 998754
No 226
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.2e-11 Score=132.98 Aligned_cols=80 Identities=23% Similarity=0.285 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..|||||+++++||.+|+.. |+++|||||++|||+.++..+.++|+++..+.++|+|||+... ..+||+++.
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14272 144 TPATGLSGGQQQRLCIARALAVE----PEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSF 219 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence 35779999999999999999976 8999999999999999999999999988767899999999765 468999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 220 l~~G~ 224 (252)
T PRK14272 220 FLVGD 224 (252)
T ss_pred EECCE
Confidence 98764
No 227
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.1e-11 Score=132.87 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=72.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++..+.++|+|||++. +..+||+++.
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVE----PEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCC----CCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEE
Confidence 35779999999999999999976 899999999999999999999999998876789999999976 5688999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 218 l~~G~ 222 (250)
T PRK14262 218 MYRGE 222 (250)
T ss_pred EECCE
Confidence 98764
No 228
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.9e-11 Score=134.30 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=71.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.. +.++|++||+...+..||+++.+
T Consensus 133 ~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l 208 (274)
T PRK13644 133 SPKTLSGGQGQCVALAGILTME----PECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVM 208 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEE
Confidence 5679999999999999999976 999999999999999999999999988754 78999999997777889999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 209 ~~G~ 212 (274)
T PRK13644 209 DRGK 212 (274)
T ss_pred ECCE
Confidence 8764
No 229
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.8e-11 Score=138.99 Aligned_cols=80 Identities=25% Similarity=0.347 Sum_probs=71.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||++++.. |+++||||||+|||+..+..+.++|+++.+ +..+|+|||+.. +..+||++
T Consensus 124 ~~~~~LSgGq~qRvalaraL~~~----p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i 199 (352)
T PRK11144 124 RYPGSLSGGEKQRVAIGRALLTA----PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRV 199 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEE
Confidence 35679999999999999999976 899999999999999999999999998754 579999999964 56889999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 200 ~~l~~G~ 206 (352)
T PRK11144 200 VVLEQGK 206 (352)
T ss_pred EEEeCCE
Confidence 9998763
No 230
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.24 E-value=2.5e-11 Score=129.77 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=71.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++..+.++|+|||++.....||+++.+.
T Consensus 136 ~~~~LS~G~~qr~~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~ 211 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLRK----SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLD 211 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEE
Confidence 5678999999999999999866 899999999999999999999999998876789999999987777799999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.+.
T Consensus 212 ~g~ 214 (221)
T cd03244 212 KGR 214 (221)
T ss_pred CCe
Confidence 753
No 231
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2e-11 Score=133.18 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=71.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~v 1239 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+..+|.++..+.++|+|||+... ..+||+++.+
T Consensus 145 ~~~~LS~G~~qrl~laral~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 145 NAMELSGGQQQRLCIARTIAVK----PEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred CcCcCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEE
Confidence 5678999999999999999865 8999999999999999999999999998777899999999655 5889999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 221 ~~G~ 224 (252)
T PRK14256 221 YMGD 224 (252)
T ss_pred ECCE
Confidence 7753
No 232
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.3e-11 Score=133.14 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=71.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~v 1239 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++..+.++|+|||+...+ .+||+++.+
T Consensus 153 ~~~~LS~Gq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 153 SGYSLSGGQQQRLCIARGIAIR----PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 5678999999999999999976 89999999999999999999999999886678999999997655 789999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 229 ~~G~ 232 (260)
T PRK10744 229 YLGE 232 (260)
T ss_pred ECCE
Confidence 8763
No 233
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.2e-11 Score=133.94 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+..+..+.++|.++..+..+|+|||+.. +..+||+++.
T Consensus 160 ~~~~~LSgGq~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~ 235 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAMK----PAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAF 235 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhCC----CCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEE
Confidence 46779999999999999999866 899999999999999999999999998866689999999975 5578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 236 l~~G~ 240 (268)
T PRK14248 236 FLNGD 240 (268)
T ss_pred EECCE
Confidence 98763
No 234
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2e-11 Score=132.32 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=70.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|+++.. +..+|+|||++... .+||+++.
T Consensus 138 ~~~~LS~G~~qrv~laral~~~----p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~ 213 (242)
T PRK11124 138 FPLHLSGGQQQRVAIARALMME----PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVY 213 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 4678999999999999999975 899999999999999999999999998764 68999999997655 68999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 214 l~~g~ 218 (242)
T PRK11124 214 MENGH 218 (242)
T ss_pred EECCE
Confidence 98653
No 235
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.24 E-value=2.5e-11 Score=126.87 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=69.6
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHH--hcceeEEE
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFE--LADRLVGI 1239 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~--~ad~~~~v 1239 (1263)
..|||||+++++||.+++.. ||++||||||++||+.++..+.++|.++.+ +.++|+|||++..+. +||+++.+
T Consensus 103 ~~LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 178 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLE----PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVL 178 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEE
Confidence 58999999999999999965 999999999999999999999999998764 679999999987776 79999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 179 ~~G~ 182 (200)
T cd03217 179 YDGR 182 (200)
T ss_pred ECCE
Confidence 8753
No 236
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.4e-11 Score=133.44 Aligned_cols=80 Identities=25% Similarity=0.296 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
.++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++..+.++|+|||+... ..+||+++.
T Consensus 163 ~~~~~LSgGe~qrv~laraL~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~ 238 (271)
T PRK14238 163 DNAYGLSGGQQQRLCIARCLAIE----PDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAF 238 (271)
T ss_pred cCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEE
Confidence 35679999999999999999865 8999999999999999999999999988767899999999765 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 239 l~~G~ 243 (271)
T PRK14238 239 FLNGY 243 (271)
T ss_pred EECCE
Confidence 98764
No 237
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.8e-11 Score=134.20 Aligned_cols=80 Identities=25% Similarity=0.305 Sum_probs=70.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||+... ..+||++
T Consensus 143 ~~~~~LSgG~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i 218 (265)
T PRK10575 143 RLVDSLSGGERQRAWIAMLVAQD----SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL 218 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35678999999999999999976 999999999999999999999999998753 6899999999654 4789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 219 ~~l~~G~ 225 (265)
T PRK10575 219 VALRGGE 225 (265)
T ss_pred EEEECCe
Confidence 9998764
No 238
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.3e-11 Score=132.81 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=71.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++..+.++|+|||++.. ..+||+++.
T Consensus 144 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~ 219 (252)
T PRK14255 144 ESALSLSGGQQQRVCIARVLAVK----PDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAF 219 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEE
Confidence 35679999999999999999976 8999999999999999999999999988767899999999765 478999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..+.
T Consensus 220 l~~G~ 224 (252)
T PRK14255 220 FLTGN 224 (252)
T ss_pred EECCE
Confidence 98763
No 239
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.4e-11 Score=134.40 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+..+..+.++|.++..+..+|+|||+... ..+||+++.
T Consensus 178 ~~~~~LSgGq~qrv~LAraL~~~----p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~ 253 (286)
T PRK14275 178 KNALGLSGGQQQRLCVARTLAVE----PEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMF 253 (286)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence 35779999999999999999976 8999999999999999999999999988767899999999655 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 254 L~~G~ 258 (286)
T PRK14275 254 FYEGV 258 (286)
T ss_pred EECCE
Confidence 98763
No 240
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.24 E-value=2e-11 Score=133.92 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=70.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-HhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+.... .+||+++
T Consensus 146 ~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~ 221 (267)
T PRK15112 146 YPHMLAPGQKQRLGLARALILR----PKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL 221 (267)
T ss_pred CchhcCHHHHHHHHHHHHHHhC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEE
Confidence 4678999999999999999976 999999999999999999999999998753 67999999996555 5799999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..+.
T Consensus 222 ~l~~G~ 227 (267)
T PRK15112 222 VMHQGE 227 (267)
T ss_pred EEECCE
Confidence 998653
No 241
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.5e-11 Score=132.36 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=71.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++..+..+|+|||+... ..+||+++.
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~ 218 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAIE----PEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGF 218 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEE
Confidence 46779999999999999999866 8999999999999999999999999988667899999999654 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 219 l~~G~ 223 (251)
T PRK14249 219 LLTGD 223 (251)
T ss_pred EeCCe
Confidence 98764
No 242
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.24 E-value=1.6e-05 Score=90.22 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=40.5
Q ss_pred CCceEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHH
Q 000833 17 WPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLF 66 (1263)
Q Consensus 17 ~~~m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~ 66 (1263)
.++|+..++.|.|+-.|--+++ +++.=+|.+.|.||+||||.|.|+..
T Consensus 2 ieRGKfrSLTliNWNGFFARTF--DlDeLVTTLSGGNGAGKSTTMA~FvT 49 (1480)
T COG3096 2 IERGKFRSLTLINWNGFFARTF--DLDELVTTLSGGNGAGKSTTMAAFVT 49 (1480)
T ss_pred CcccccceeeEeeccchhhhhc--cHHHHHHhccCCCCCcccchHHHHHH
Confidence 3578899999999999877765 66667889999999999999998753
No 243
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.2e-11 Score=134.12 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=72.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +.++|+|||++.....||+++
T Consensus 136 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~ 211 (279)
T PRK13635 136 REPHRLSGGQKQRVAIAGVLALQ----PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVI 211 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE
Confidence 35679999999999999999976 899999999999999999999999998764 689999999977777899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 212 ~l~~G~ 217 (279)
T PRK13635 212 VMNKGE 217 (279)
T ss_pred EEECCE
Confidence 998763
No 244
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.6e-11 Score=132.21 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+++..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++..+.++|+|||+.. +..+||+++.
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~ 217 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVE----PEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAF 217 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEE
Confidence 35679999999999999999976 899999999999999999999999998866789999999976 5678999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 218 l~~G~ 222 (250)
T PRK14240 218 FLNGE 222 (250)
T ss_pred EECCE
Confidence 98764
No 245
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.7e-11 Score=133.17 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=70.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+++..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++..+..+|+|||+.. +..+||+++.
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~ 232 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIAMK----PDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAF 232 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHhhC----CCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 35678999999999999999866 999999999999999999999999998876789999999964 5579999999
Q ss_pred EE
Q 000833 1239 IY 1240 (1263)
Q Consensus 1239 v~ 1240 (1263)
+.
T Consensus 233 l~ 234 (274)
T PRK14265 233 FN 234 (274)
T ss_pred Ee
Confidence 97
No 246
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.3e-11 Score=134.80 Aligned_cols=80 Identities=24% Similarity=0.252 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..|||||++|++||++|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++.. ..+||+++
T Consensus 141 ~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 141 KNPFELSGGQMRRVAIAGILAME----PKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEE
Confidence 35779999999999999999976 899999999999999999999999998754 6899999999765 47899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 217 ~l~~G~ 222 (280)
T PRK13649 217 VLEKGK 222 (280)
T ss_pred EEECCE
Confidence 998763
No 247
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.4e-11 Score=132.98 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=69.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..|||||+++++||++++.. |+++||||||+|||+..+..+.++|.++.++.++|+|||+... ..+||+++.
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~ 219 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVE----PDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAF 219 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 46779999999999999999866 8999999999999999999999999988667899999999654 578999999
Q ss_pred EE
Q 000833 1239 IY 1240 (1263)
Q Consensus 1239 v~ 1240 (1263)
+.
T Consensus 220 l~ 221 (258)
T PRK14241 220 FN 221 (258)
T ss_pred Ee
Confidence 97
No 248
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.4e-11 Score=132.43 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=71.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~v 1239 (1263)
.+..|||||+++++||+.|+.. |+++||||||+|||+.+...+.++|.++..+.++|+|||+... ..+||+++.+
T Consensus 146 ~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 146 SAFELSGGQQQRLCIARAIAVK----PTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEE
Confidence 5678999999999999999865 8999999999999999999999999988667899999999765 5789999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 222 ~~G~ 225 (251)
T PRK14244 222 QSGR 225 (251)
T ss_pred ECCE
Confidence 8764
No 249
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=2.6e-11 Score=131.14 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=71.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|..+.++.++|+|||+......||+++.+.
T Consensus 134 ~~~~LS~G~~~rl~la~aL~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~ 209 (236)
T cd03253 134 RGLKLSGGEKQRVAIARAILKN----PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLK 209 (236)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEE
Confidence 4678999999999999999976 899999999999999999999999988766789999999987777799999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.+.
T Consensus 210 ~g~ 212 (236)
T cd03253 210 DGR 212 (236)
T ss_pred CCE
Confidence 764
No 250
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.23 E-value=2.2e-11 Score=125.17 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=66.8
Q ss_pred CChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch-hHHHhcceeEEEEec
Q 000833 1165 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN-NMFELADRLVGIYKT 1242 (1263)
Q Consensus 1165 lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~-~~~~~ad~~~~v~~~ 1242 (1263)
|||||+++++||++++.. ||++|||||++|||+.++..+.++|.++.. +.++|++||+. .+..+||+++.+..|
T Consensus 105 LS~G~~qrl~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G 180 (182)
T cd03215 105 LSGGNQQKVVLARWLARD----PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEG 180 (182)
T ss_pred cCHHHHHHHHHHHHHccC----CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCC
Confidence 999999999999999876 899999999999999999999999998754 68999999996 456789999998764
No 251
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.8e-11 Score=138.78 Aligned_cols=78 Identities=28% Similarity=0.338 Sum_probs=73.0
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...|||||+||++||++|. .|+|+++||||||+||..+...|.+.|.+++++..+|+|||++..+..||+++.+..
T Consensus 454 G~~LSgGQ~QRlaLARAll----~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~ 529 (559)
T COG4988 454 GAGLSGGQAQRLALARALL----SPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDN 529 (559)
T ss_pred CCCCCHHHHHHHHHHHHhc----CCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecC
Confidence 3469999999999999997 459999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 530 G~ 531 (559)
T COG4988 530 GR 531 (559)
T ss_pred Cc
Confidence 74
No 252
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2e-11 Score=133.62 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=71.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+++..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +.++|+|||+... ..+||++
T Consensus 149 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 149 RQAGNLAYGQQRRLEIARCMVTQ----PEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45779999999999999999976 899999999999999999999999988753 6799999999655 4789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 225 ~~l~~g~ 231 (255)
T PRK11300 225 YVVNQGT 231 (255)
T ss_pred EEEECCe
Confidence 9998764
No 253
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2e-11 Score=133.94 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=71.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+.. +..+||++
T Consensus 139 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 139 QSVDTLSGGQRQRAWIAMVLAQE----TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred CCcccCChHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46779999999999999999976 899999999999999999999999998753 679999999975 66899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 215 ~~l~~G~ 221 (265)
T PRK10253 215 IALREGK 221 (265)
T ss_pred EEEECCE
Confidence 9998764
No 254
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.23 E-value=2.4e-11 Score=132.47 Aligned_cols=84 Identities=26% Similarity=0.331 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhcc--CCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHH-Hhcc
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHH--YKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMF-ELAD 1234 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~--~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~-~~ad 1234 (1263)
+.+..|||||+++++||.+|+..- -.+|+++||||||+|||+.++..+.++|.++. .+..+|+|||+...+ .+||
T Consensus 130 ~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 130 RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcC
Confidence 356799999999999999998410 01378999999999999999999999999876 368999999997554 6899
Q ss_pred eeEEEEecC
Q 000833 1235 RLVGIYKTD 1243 (1263)
Q Consensus 1235 ~~~~v~~~~ 1243 (1263)
+++.+..|.
T Consensus 210 ~i~~l~~G~ 218 (258)
T PRK13548 210 RIVLLHQGR 218 (258)
T ss_pred EEEEEECCE
Confidence 999998764
No 255
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.23 E-value=2.3e-11 Score=137.34 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||++|+.. |+++||||||+|||+..+..+.+.|.++.+ +..+|+|||+.. +..+||++
T Consensus 160 ~~~~~LSgGq~QRV~LARALa~~----P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI 235 (382)
T TIGR03415 160 KKPGELSGGMQQRVGLARAFAMD----ADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRI 235 (382)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 45678999999999999999966 899999999999999999999999988754 689999999965 46899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 236 ~vl~~G~ 242 (382)
T TIGR03415 236 AIMEGGR 242 (382)
T ss_pred EEEECCE
Confidence 9998764
No 256
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.6e-11 Score=133.49 Aligned_cols=80 Identities=25% Similarity=0.294 Sum_probs=71.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+... ..+||+++
T Consensus 133 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~ 208 (275)
T PRK13639 133 KPPHHLSGGQKKRVAIAGILAMK----PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVY 208 (275)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 35679999999999999999866 999999999999999999999999998764 6899999999665 56899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 209 ~l~~G~ 214 (275)
T PRK13639 209 VMSDGK 214 (275)
T ss_pred EEECCE
Confidence 998763
No 257
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.2e-11 Score=134.56 Aligned_cols=80 Identities=25% Similarity=0.251 Sum_probs=71.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +.++|+|||+......||+++
T Consensus 140 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~ 215 (280)
T PRK13633 140 HAPHLLSGGQKQRVAIAGILAMR----PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRII 215 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEE
Confidence 35679999999999999999876 899999999999999999999999998753 789999999987777799999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 216 ~l~~G~ 221 (280)
T PRK13633 216 VMDSGK 221 (280)
T ss_pred EEECCE
Confidence 998764
No 258
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.23 E-value=1.9e-11 Score=134.08 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=71.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||++|++||.+++.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||++. +..+||++
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i 223 (262)
T PRK09984 148 QRVSTLSGGQQQRVAIARALMQQ----AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI 223 (262)
T ss_pred CCccccCHHHHHHHHHHHHHhcC----CCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 35678999999999999999876 899999999999999999999999998763 689999999976 57899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..+.
T Consensus 224 ~~l~~g~ 230 (262)
T PRK09984 224 VALRQGH 230 (262)
T ss_pred EEEECCE
Confidence 9998763
No 259
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.23 E-value=2.4e-11 Score=132.94 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||++|++||++|+.. |+++||||||+|||+.+...+.++|+.+.. +..+|+|||+.... .+||++
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i 222 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTH----PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRL 222 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 35679999999999999999865 999999999999999999999999988754 68999999997666 589999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 223 ~~l~~g~ 229 (258)
T PRK11701 223 LVMKQGR 229 (258)
T ss_pred EEEECCE
Confidence 9998763
No 260
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.4e-11 Score=133.93 Aligned_cols=80 Identities=28% Similarity=0.336 Sum_probs=71.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.. +..+|++||+... ..+||++
T Consensus 133 ~~~~~LS~Gq~qrl~laraL~~~----p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv 208 (277)
T PRK13652 133 RVPHHLSGGEKKRVAIAGVIAME----PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYI 208 (277)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 35679999999999999999976 899999999999999999999999998764 6899999999655 5799999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 209 ~~l~~G~ 215 (277)
T PRK13652 209 YVMDKGR 215 (277)
T ss_pred EEEECCe
Confidence 9998764
No 261
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.23 E-value=2.5e-11 Score=130.60 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=70.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-HhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++.. +.++|+|||+...+ .+||+++
T Consensus 128 ~~~~LS~G~~qrv~la~al~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 203 (230)
T TIGR03410 128 RGGDLSGGQQQQLAIARALVTR----PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYY 203 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEE
Confidence 5678999999999999999866 899999999999999999999999998764 68999999997655 5899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 204 ~l~~g~ 209 (230)
T TIGR03410 204 VMERGR 209 (230)
T ss_pred EEECCE
Confidence 998763
No 262
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=135.37 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=71.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~v 1239 (1263)
.+..|||||++|++||++++.. |+++||||||+|||+.+...+.+.|..+.++.++|+|||+... ..+||+++.+
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~~----p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIALE----PEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5678999999999999999876 9999999999999999999999999988878999999999765 5679999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 298 ~~G~ 301 (329)
T PRK14257 298 YQGW 301 (329)
T ss_pred ECCE
Confidence 8764
No 263
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.23 E-value=2.7e-11 Score=129.01 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=67.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchh-HHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++. ++.++|+|||+.. +..+||+++.
T Consensus 110 ~~~~LS~G~~qrv~laral~~~----p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~ 185 (223)
T TIGR03771 110 PVGELSGGQRQRVLVARALATR----PSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVL 185 (223)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5668999999999999999976 99999999999999999999999999875 3789999999975 5678999987
Q ss_pred E
Q 000833 1239 I 1239 (1263)
Q Consensus 1239 v 1239 (1263)
+
T Consensus 186 l 186 (223)
T TIGR03771 186 L 186 (223)
T ss_pred E
Confidence 7
No 264
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.23 E-value=2.4e-11 Score=133.24 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=70.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+++..|||||+++++||.+++.. |+++||||||++||+.....+.++|.++.+ +..+|+|||+...+ .+||++
T Consensus 146 ~~~~~LSgGe~qrv~laral~~~----p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 146 KLPRQLSGGQLQRINIARALAVK----PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEE
Confidence 35678999999999999999865 899999999999999999999999998753 68999999997655 689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 222 ~~l~~G~ 228 (265)
T TIGR02769 222 AVMDKGQ 228 (265)
T ss_pred EEEeCCE
Confidence 9998763
No 265
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.23 E-value=2.7e-11 Score=138.76 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=70.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..|||||++|++||++|+.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||+... ..+||+++
T Consensus 139 ~~~~~LSGGQrQRVaLArAL~~~----P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIi 214 (549)
T PRK13545 139 QPVKTYSSGMKSRLGFAISVHIN----PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKAL 214 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC----CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE
Confidence 35779999999999999999976 999999999999999999999999988753 6799999999654 57899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 215 vL~~G 219 (549)
T PRK13545 215 WLHYG 219 (549)
T ss_pred EEECC
Confidence 99865
No 266
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.22 E-value=2.2e-11 Score=130.23 Aligned_cols=80 Identities=21% Similarity=0.209 Sum_probs=71.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+..+..+.++|.++.. +.++|+|||++... .+||+++
T Consensus 120 ~~~~~LS~G~~~rv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~ 195 (223)
T TIGR03740 120 KKAKQFSLGMKQRLGIAIALLNH----PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIG 195 (223)
T ss_pred hhHhhCCHHHHHHHHHHHHHhcC----CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE
Confidence 35678999999999999999865 899999999999999999999999998754 67999999997655 7899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 196 ~l~~g~ 201 (223)
T TIGR03740 196 IISEGV 201 (223)
T ss_pred EEeCCE
Confidence 998764
No 267
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.2e-11 Score=132.09 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=70.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcch-hHHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRN-NMFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~-~~~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++..+.++|+|||+. .+..+||+++.
T Consensus 147 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~ 222 (264)
T PRK14243 147 QSGLSLSGGQQQRLCIARAIAVQ----PEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAF 222 (264)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 35678999999999999999976 89999999999999999999999999887678999999996 45689999999
Q ss_pred EE
Q 000833 1239 IY 1240 (1263)
Q Consensus 1239 v~ 1240 (1263)
+.
T Consensus 223 l~ 224 (264)
T PRK14243 223 FN 224 (264)
T ss_pred Ee
Confidence 97
No 268
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.22 E-value=2.6e-11 Score=132.40 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=70.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+.... .+||++
T Consensus 144 ~~~~~LSgG~~qrv~laral~~~----p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~ 219 (253)
T TIGR02323 144 DLPRAFSGGMQQRLQIARNLVTR----PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRL 219 (253)
T ss_pred cCchhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 35678999999999999999866 999999999999999999999999988643 68999999997655 589999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 220 ~~l~~G~ 226 (253)
T TIGR02323 220 LVMQQGR 226 (253)
T ss_pred EEEECCE
Confidence 9998763
No 269
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2.7e-11 Score=132.20 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|..+..+.++|+|||+... ..+||+++.
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVN----PEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGF 220 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEE
Confidence 35678999999999999999976 8999999999999999999999999988767899999999654 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 221 l~~G~ 225 (253)
T PRK14261 221 MYLGK 225 (253)
T ss_pred EECCE
Confidence 98764
No 270
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=2.8e-11 Score=133.67 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=72.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+.+..|||||+++++||.+++.. |+++|||||++|||+.++..+.++|.++.. +.++|+|||+......||+++
T Consensus 139 ~~~~~LS~G~~qrv~laral~~~----P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~ 214 (282)
T PRK13640 139 SEPANLSGGQKQRVAIAGILAVE----PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVL 214 (282)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE
Confidence 35679999999999999999976 999999999999999999999999998753 689999999977778899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 215 ~l~~G~ 220 (282)
T PRK13640 215 VLDDGK 220 (282)
T ss_pred EEECCE
Confidence 998764
No 271
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.22 E-value=2.9e-11 Score=131.87 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +.++|+|||++.. ..+||++
T Consensus 136 ~~~~~LS~Gq~qrv~laral~~~----p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 136 LYPFEMSGGMLQRMMIALALLCE----APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred cCCcccCHHHHHHHHHHHHHhcC----CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEE
Confidence 35679999999999999999966 899999999999999999999999988753 6899999999655 4789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 212 ~~l~~G~ 218 (254)
T PRK10418 212 AVMSHGR 218 (254)
T ss_pred EEEECCE
Confidence 9998763
No 272
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=2.8e-11 Score=133.43 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=71.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
++..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|.++.. +.++|+|||+...+..||+++.
T Consensus 137 ~~~~LS~G~~qrv~lAraL~~~----p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~ 212 (277)
T PRK13642 137 EPARLSGGQKQRVAVAGIIALR----PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILV 212 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 5678999999999999999976 899999999999999999999999998764 6899999999777778999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 213 l~~G~ 217 (277)
T PRK13642 213 MKAGE 217 (277)
T ss_pred EECCE
Confidence 98764
No 273
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.22 E-value=2.1e-11 Score=126.98 Aligned_cols=76 Identities=25% Similarity=0.502 Sum_probs=57.7
Q ss_pred EEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHc-Ccchhh-hhhhcccccccccccCCCCCceEEE
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVF-GKRAKQ-MRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~l-g~~~~~-~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|++|+|.||+||.+.+.+ +|++|+++|+|||||||||+++||+|++ |..... .+.....+++..+ ...+.|.
T Consensus 1 ~~~l~l~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~-----~~~~~v~ 74 (204)
T cd03240 1 IDKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG-----EVRAQVK 74 (204)
T ss_pred CcEEEEECcccccCceEE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC-----CCcEEEE
Confidence 578999999998776666 7999999999999999999999999986 543221 1111233555554 6678999
Q ss_pred EEEe
Q 000833 100 VHFQ 103 (1263)
Q Consensus 100 ~~~~ 103 (1263)
++|.
T Consensus 75 ~~f~ 78 (204)
T cd03240 75 LAFE 78 (204)
T ss_pred EEEE
Confidence 9994
No 274
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.22 E-value=2.7e-11 Score=132.15 Aligned_cols=79 Identities=25% Similarity=0.342 Sum_probs=70.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.+ +.++|+|||+... ..+||+++
T Consensus 143 ~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T TIGR03005 143 MPAQLSGGQQQRVAIARALAMR----PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218 (252)
T ss_pred ChhhcCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 4678999999999999999865 899999999999999999999999998753 6899999999654 47899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 219 ~l~~G~ 224 (252)
T TIGR03005 219 FFDKGR 224 (252)
T ss_pred EEECCE
Confidence 998764
No 275
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3e-11 Score=131.80 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++++.. |+++|||||++|||+.++..+.++|.++..+..+|+|||++.. ..+||+++.
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVR----PKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAF 218 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEE
Confidence 35679999999999999999865 8999999999999999999999999988667899999999765 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 219 l~~G~ 223 (251)
T PRK14251 219 LMNGD 223 (251)
T ss_pred EECCE
Confidence 98764
No 276
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.6e-11 Score=131.92 Aligned_cols=80 Identities=24% Similarity=0.267 Sum_probs=72.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+++..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++..+.++|+|||++. +..+||+++.
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVK----PDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEE
Confidence 35779999999999999999976 899999999999999999999999998876789999999965 4589999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 235 l~~G~ 239 (267)
T PRK14237 235 FYLGD 239 (267)
T ss_pred EECCE
Confidence 98763
No 277
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.4e-11 Score=132.36 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=71.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||..|+.. |+++||||||+|||+.++..+.++|.++....++|+|||+.. +..+||+++.
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~ 234 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVN----PEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAAL 234 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 35678999999999999999865 899999999999999999999999998876789999999965 4678999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..+.
T Consensus 235 l~~G~ 239 (276)
T PRK14271 235 FFDGR 239 (276)
T ss_pred EECCE
Confidence 98763
No 278
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=3e-11 Score=125.30 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=67.4
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh--HHHhcceeEEEE
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN--MFELADRLVGIY 1240 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~--~~~~ad~~~~v~ 1240 (1263)
.|||||+++++||.+++.. ||++|||||+++||+.++..+.++|.++.. +.++|+|||++. +..+||+++.+.
T Consensus 108 ~LSgGe~qrv~la~al~~~----p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~ 183 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAK----PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLK 183 (192)
T ss_pred cCCHHHhHHHHHHHHHhcC----CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEc
Confidence 7999999999999999875 899999999999999999999999998764 689999999975 468899999887
Q ss_pred e
Q 000833 1241 K 1241 (1263)
Q Consensus 1241 ~ 1241 (1263)
.
T Consensus 184 ~ 184 (192)
T cd03232 184 R 184 (192)
T ss_pred C
Confidence 5
No 279
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.22 E-value=1.5e-11 Score=127.13 Aligned_cols=82 Identities=39% Similarity=0.735 Sum_probs=63.1
Q ss_pred EEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcc-hhhhhhhccccccccccc-CCCCCceEEE
Q 000833 22 IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLNKVSELIHNSTN-YQNLDSAGVS 99 (1263)
Q Consensus 22 i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~-~~~~r~~~~~~~i~~g~~-~~~~~~a~v~ 99 (1263)
|++|.+.||+||+....+ +|.+|+++|+|||||||||+++||+|++|.. ....|+....++++.|.. ......+.|.
T Consensus 1 ~~~~~~~~fr~~~~~~~l-~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (197)
T cd03278 1 LKKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT 79 (197)
T ss_pred CcEEEEeCCcCcCCCeee-ecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE
Confidence 568999999999443333 6777899999999999999999999998753 445678778888887742 2223467888
Q ss_pred EEEee
Q 000833 100 VHFQE 104 (1263)
Q Consensus 100 ~~~~~ 104 (1263)
++|++
T Consensus 80 ~vfq~ 84 (197)
T cd03278 80 LTFDN 84 (197)
T ss_pred EEEEc
Confidence 88853
No 280
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.22 E-value=3.1e-11 Score=131.86 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=71.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||++... .+||+++.
T Consensus 134 ~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 209 (256)
T TIGR03873 134 DMSTLSGGERQRVHVARALAQE----PKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVV 209 (256)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5678999999999999999976 899999999999999999999999998764 67999999997655 78999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 210 l~~G~ 214 (256)
T TIGR03873 210 LDGGR 214 (256)
T ss_pred EeCCC
Confidence 98764
No 281
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.21 E-value=3.7e-11 Score=124.75 Aligned_cols=75 Identities=27% Similarity=0.350 Sum_probs=68.1
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh--HHHhcceeEEEE
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN--MFELADRLVGIY 1240 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~--~~~~ad~~~~v~ 1240 (1263)
.|||||+++++||++++.. ||++|||||++|||+..+..+.++|.++.. +.++|+|||++. +..+||+++.+.
T Consensus 111 ~LS~G~~qrv~laral~~~----p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~ 186 (194)
T cd03213 111 GLSGGERKRVSIALELVSN----PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS 186 (194)
T ss_pred cCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe
Confidence 7999999999999999976 899999999999999999999999998754 789999999963 567899999998
Q ss_pred ec
Q 000833 1241 KT 1242 (1263)
Q Consensus 1241 ~~ 1242 (1263)
.+
T Consensus 187 ~G 188 (194)
T cd03213 187 QG 188 (194)
T ss_pred CC
Confidence 75
No 282
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=3.2e-11 Score=132.63 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=70.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.++..+.++|.++.. +.++|+|||++..+..||+++.
T Consensus 139 ~~~~LS~G~~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~ 214 (269)
T PRK13648 139 EPNALSGGQKQRVAIAGVLALN----PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIV 214 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEE
Confidence 4678999999999999999976 999999999999999999999999998753 6899999999766667999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 215 l~~G~ 219 (269)
T PRK13648 215 MNKGT 219 (269)
T ss_pred EECCE
Confidence 98763
No 283
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.21 E-value=3e-11 Score=128.73 Aligned_cols=78 Identities=28% Similarity=0.372 Sum_probs=70.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+++.. |+++|||||++|||+..+..+..+|+++.. +..+|+|||+..++.+||+++.
T Consensus 138 ~~~~lS~G~~qrv~laral~~~----p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~ 213 (220)
T TIGR02982 138 YPHNLSGGQKQRVAIARALVHR----PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVH 213 (220)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE
Confidence 4568999999999999999866 899999999999999999999999988753 6899999999888889999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..+
T Consensus 214 l~~g 217 (220)
T TIGR02982 214 MEDG 217 (220)
T ss_pred EECC
Confidence 8765
No 284
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.21 E-value=2.8e-11 Score=129.61 Aligned_cols=76 Identities=28% Similarity=0.359 Sum_probs=68.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
++..|||||+++++||.+|+.. |+++||||||+|||+..+..+.++|.++.. +.++|+|||++..+ .+||+++.
T Consensus 146 ~~~~LS~G~~qrl~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 146 PPATFSGGEQQRVNIARGFIAD----YPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMD 221 (224)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEe
Confidence 5678999999999999999865 899999999999999999999999998754 68999999998766 68999988
Q ss_pred EE
Q 000833 1239 IY 1240 (1263)
Q Consensus 1239 v~ 1240 (1263)
++
T Consensus 222 ~~ 223 (224)
T TIGR02324 222 VT 223 (224)
T ss_pred cC
Confidence 75
No 285
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.21 E-value=3.9e-11 Score=128.48 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=71.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch--hHHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN--NMFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~--~~~~~ad~~ 1236 (1263)
+.+..|||||+++++||++++.. |+++|||||++|||+..+..+.++|.++.. +..+|+|||+. .+..+||++
T Consensus 139 ~~~~~LS~G~~qrl~laral~~~----p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 139 NLVKGISGGERRRVSIAVQLLWD----PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred ccccCcCHHHHHHHHHHHHHHhC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEE
Confidence 35678999999999999999976 899999999999999999999999988754 67999999996 678999999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 215 ~~l~~G~ 221 (226)
T cd03234 215 LLLSSGE 221 (226)
T ss_pred EEEeCCE
Confidence 9998763
No 286
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.21 E-value=2.1e-11 Score=147.54 Aligned_cols=78 Identities=27% Similarity=0.334 Sum_probs=73.7
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...||||||||++||+++... ||++||||||++||+.+...+.+.|.+...+.++|+||||+.+...||+++.+..
T Consensus 607 G~~LSGGQrQrlalARaLl~~----P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~ 682 (709)
T COG2274 607 GANLSGGQRQRLALARALLSK----PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682 (709)
T ss_pred CCCCCHHHHHHHHHHHHhccC----CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccC
Confidence 357999999999999999865 9999999999999999999999999999989999999999999999999999998
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 683 Gk 684 (709)
T COG2274 683 GK 684 (709)
T ss_pred Cc
Confidence 85
No 287
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=3.1e-11 Score=130.77 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch-hHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN-NMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~-~~~~~ad~~~ 1237 (1263)
+++..|||||+++++||+.++.. |+++||||||+|||+..+..+.++|..+.. +..+|+|||++ .+..+||+++
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~ 208 (241)
T PRK10895 133 SMGQSLSGGERRRVEIARALAAN----PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAY 208 (241)
T ss_pred cchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE
Confidence 35679999999999999999865 899999999999999999999999988754 68999999997 5668999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 209 ~l~~G~ 214 (241)
T PRK10895 209 IVSQGH 214 (241)
T ss_pred EEeCCe
Confidence 998764
No 288
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=4e-11 Score=132.33 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=68.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||.+|+.. |+++||||||+|||+.++..+.++|+++.++..+|+|||+... ..+||+++.
T Consensus 176 ~~~~~LSgGe~qrv~LAraL~~~----p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v 251 (285)
T PRK14254 176 SSGLDLSGGQQQRLCIARAIAPD----PEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAV 251 (285)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEE
Confidence 35679999999999999999866 8999999999999999999999999988766899999999765 468999764
Q ss_pred E-Eec
Q 000833 1239 I-YKT 1242 (1263)
Q Consensus 1239 v-~~~ 1242 (1263)
+ ..|
T Consensus 252 ~l~~G 256 (285)
T PRK14254 252 FLTGG 256 (285)
T ss_pred EeeCC
Confidence 4 544
No 289
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.21 E-value=3.1e-11 Score=130.43 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=68.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+++..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||+... ..+||++
T Consensus 116 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i 191 (251)
T PRK09544 116 APMQKLSGGETQRVLLARALLNR----PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEV 191 (251)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 35678999999999999999865 899999999999999999999999988753 6899999999655 5789999
Q ss_pred EEEE
Q 000833 1237 VGIY 1240 (1263)
Q Consensus 1237 ~~v~ 1240 (1263)
+.+.
T Consensus 192 ~~l~ 195 (251)
T PRK09544 192 LCLN 195 (251)
T ss_pred EEEC
Confidence 9884
No 290
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=3.3e-11 Score=137.08 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=70.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+.+..|||||+||++||++|+.. |++++||||+++||+..+..+...|.++.. +.++|+|||++. ++.+||++
T Consensus 145 ~~~~~LSgGq~QRVaLARAL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri 220 (377)
T PRK11607 145 RKPHQLSGGQRQRVALARSLAKR----PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220 (377)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 46779999999999999999976 899999999999999999999988877642 689999999965 57899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 221 ~vl~~G~ 227 (377)
T PRK11607 221 AIMNRGK 227 (377)
T ss_pred EEEeCCE
Confidence 9998763
No 291
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.20 E-value=8.5e-12 Score=135.40 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=74.8
Q ss_pred CCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc-hhHHH
Q 000833 1155 PKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR-NNMFE 1231 (1263)
Q Consensus 1155 ~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~-~~~~~ 1231 (1263)
.+...+.+.+|||||+||||||++++.. |++++||||.++||...+..+...|+++.+ +.++|.|||+ .+.|.
T Consensus 124 ~~lL~r~P~~LSGGQrQRVAlaRAlVr~----P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmt 199 (338)
T COG3839 124 EHLLNRKPLQLSGGQRQRVALARALVRK----PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT 199 (338)
T ss_pred hhHHhcCcccCChhhHHHHHHHHHHhcC----CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHh
Confidence 3344577899999999999999999866 889999999999999999999999988654 6899999999 57889
Q ss_pred hcceeEEEEecC
Q 000833 1232 LADRLVGIYKTD 1243 (1263)
Q Consensus 1232 ~ad~~~~v~~~~ 1243 (1263)
+||++..+..|.
T Consensus 200 ladri~Vm~~G~ 211 (338)
T COG3839 200 LADRIVVMNDGR 211 (338)
T ss_pred hCCEEEEEeCCe
Confidence 999999999653
No 292
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.20 E-value=4e-11 Score=130.39 Aligned_cols=79 Identities=25% Similarity=0.429 Sum_probs=69.2
Q ss_pred ccc-cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-Hh-ccee
Q 000833 1161 NIA-NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-EL-ADRL 1236 (1263)
Q Consensus 1161 ~~~-~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~-ad~~ 1236 (1263)
.+. .|||||+++++||.+++.. |+++||||||++||+..+..+.++|.++.+ +..+|+|||++..+ .+ ||++
T Consensus 140 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i 215 (243)
T TIGR01978 140 SVNEGFSGGEKKRNEILQMALLE----PKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYV 215 (243)
T ss_pred ccccCcCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeE
Confidence 444 5999999999999999865 899999999999999999999999998764 68999999997666 45 8999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 216 ~~l~~G~ 222 (243)
T TIGR01978 216 HVLLDGR 222 (243)
T ss_pred EEEeCCE
Confidence 9988763
No 293
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=5.3e-11 Score=119.34 Aligned_cols=75 Identities=24% Similarity=0.358 Sum_probs=66.6
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHH-hcceeEEEEe
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFE-LADRLVGIYK 1241 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~-~ad~~~~v~~ 1241 (1263)
+|||||+++++||++++.. ||++||||||++||..++..+.++|.++.. +.++|+|||+..... +||+++.+..
T Consensus 80 qlS~G~~~r~~l~~~l~~~----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 155 (157)
T cd00267 80 QLSGGQRQRVALARALLLN----PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKD 155 (157)
T ss_pred eCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 3999999999999999976 899999999999999999999999988754 479999999976664 5799998875
Q ss_pred c
Q 000833 1242 T 1242 (1263)
Q Consensus 1242 ~ 1242 (1263)
+
T Consensus 156 g 156 (157)
T cd00267 156 G 156 (157)
T ss_pred c
Confidence 4
No 294
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=3.3e-11 Score=132.54 Aligned_cols=79 Identities=28% Similarity=0.341 Sum_probs=70.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+|+.. ||++||||||+|||+..+..+.++|.++.+ +..+|+|||++..+..||+++.
T Consensus 139 ~~~~LS~G~~qrl~laral~~~----p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~ 214 (271)
T PRK13632 139 EPQNLSGGQKQRVAIASVLALN----PEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIV 214 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEE
Confidence 5679999999999999999866 899999999999999999999999998764 4799999999776678999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 215 l~~G~ 219 (271)
T PRK13632 215 FSEGK 219 (271)
T ss_pred EECCE
Confidence 98764
No 295
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.20 E-value=4.2e-11 Score=126.74 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=68.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
..+..|||||+++++||++++.. |+++||||||++||+..+..+.++|.++.+ +.++|+|||+.. +..+||+++
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 133 TLVRQLSAGQKKRLALARLWLSP----APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRML 208 (214)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEE
Confidence 35678999999999999999966 899999999999999999999999987643 689999999965 457999998
Q ss_pred EEE
Q 000833 1238 GIY 1240 (1263)
Q Consensus 1238 ~v~ 1240 (1263)
.+.
T Consensus 209 ~l~ 211 (214)
T PRK13543 209 TLE 211 (214)
T ss_pred EEe
Confidence 875
No 296
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.20 E-value=4.6e-11 Score=130.27 Aligned_cols=76 Identities=26% Similarity=0.453 Sum_probs=67.7
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHh--cceeEEEE
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFEL--ADRLVGIY 1240 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~--ad~~~~v~ 1240 (1263)
.|||||+++++||.+++.. |+++||||||+|||+..+..+.++|..+.+ +.++|+|||++..... ||+++.+.
T Consensus 145 ~LS~G~~qrv~laral~~~----p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~ 220 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLE----PELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLY 220 (248)
T ss_pred CCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEE
Confidence 7999999999999999866 899999999999999999999999988765 6899999999777654 89998887
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.+.
T Consensus 221 ~g~ 223 (248)
T PRK09580 221 QGR 223 (248)
T ss_pred CCe
Confidence 653
No 297
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.20 E-value=7.2e-07 Score=108.10 Aligned_cols=79 Identities=9% Similarity=0.115 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 1042 DLKRTLEMVALLEAQLKELNPNLDSIT-EYRRKVAAYNERVEDLTTVTQQRDDVKKQYDEWRKKRLDEFMAGFNAISLKL 1120 (1263)
Q Consensus 1042 ~~~~l~~~i~~l~~~i~~l~~nl~~~~-e~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~~f~~~~~~~~~~~ 1120 (1263)
.+..+..++..+...+..-++|+.++. +|.....++..+..+..++......+...|.. ..+|+.+|..|+..|
T Consensus 449 ~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f 523 (569)
T PRK04778 449 MFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYRSDNEEVAEAL 523 (569)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHHHHHH
Confidence 345678899999999999778999999 99999999999999999999888888877766 667888899999888
Q ss_pred HHHHH
Q 000833 1121 KEMYQ 1125 (1263)
Q Consensus 1121 ~~~~~ 1125 (1263)
..--.
T Consensus 524 ~~Ae~ 528 (569)
T PRK04778 524 NEAER 528 (569)
T ss_pred HHHHH
Confidence 65543
No 298
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.20 E-value=4.2e-11 Score=130.86 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHh-----ccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-H
Q 000833 1160 KNIANLSGGEKTLSSLALVFAL-----HHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-E 1231 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~-----~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~ 1231 (1263)
+++..|||||+++++||++|+. ....+|+++||||||+|||+.++..+.++|.++.+ +..+|+|||++... .
T Consensus 141 ~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~ 220 (272)
T PRK13547 141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR 220 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 4677999999999999999984 11124899999999999999999999999998754 68999999996554 6
Q ss_pred hcceeEEEEecC
Q 000833 1232 LADRLVGIYKTD 1243 (1263)
Q Consensus 1232 ~ad~~~~v~~~~ 1243 (1263)
+||+++.+..|.
T Consensus 221 ~~d~i~~l~~G~ 232 (272)
T PRK13547 221 HADRIAMLADGA 232 (272)
T ss_pred hCCEEEEEECCe
Confidence 899999998764
No 299
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=4.6e-11 Score=128.35 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=70.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
.+..|||||+++++||++++.. ||++||||||+|||+..+..+.++|.++.+ +.++|+|||++. +..+||+++
T Consensus 127 ~~~~lS~G~~qrl~laral~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~ 202 (232)
T cd03300 127 KPSQLSGGQQQRVAIARALVNE----PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIA 202 (232)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE
Confidence 4568999999999999999976 899999999999999999999999998764 689999999975 568899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 203 ~l~~G~ 208 (232)
T cd03300 203 VMNKGK 208 (232)
T ss_pred EEECCE
Confidence 998763
No 300
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4.7e-11 Score=131.42 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++..+..+|+|||++.. ..+||+++.
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~----p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~ 239 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIE----PEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAF 239 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEE
Confidence 35678999999999999999865 8999999999999999999999999988767899999999755 578999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 240 l~~G~ 244 (272)
T PRK14236 240 MYMGK 244 (272)
T ss_pred EECCE
Confidence 98764
No 301
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=5e-11 Score=130.37 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=70.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcch-hHHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRN-NMFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~-~~~~~ad~~~~ 1238 (1263)
+.+..|||||+++++||++|+.. |+++||||||+|||+.+...+.++|.++..+..+|+|||++ .+..+||+++.
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~ 221 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIK----PKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAF 221 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEE
Confidence 35679999999999999999865 89999999999999999999999999887678999999996 44578999999
Q ss_pred EEe
Q 000833 1239 IYK 1241 (1263)
Q Consensus 1239 v~~ 1241 (1263)
+..
T Consensus 222 l~~ 224 (259)
T PRK14260 222 FST 224 (259)
T ss_pred Eec
Confidence 974
No 302
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.19 E-value=4.6e-11 Score=115.19 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=73.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcc-hhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLR-NNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~-~~~~~~ad~~~ 1237 (1263)
+.+..||-|+||+|+||.++.+. |.++|||||++|||...++.+.++|+.+.. +..+||.||. +++.++||+++
T Consensus 129 rRv~~~S~G~kqkV~iARAlvh~----P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi 204 (245)
T COG4555 129 RRVGEFSTGMKQKVAIARALVHD----PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204 (245)
T ss_pred HHHhhhchhhHHHHHHHHHHhcC----CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE
Confidence 35668999999999999999876 899999999999999999999999998875 8999999999 67778999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+++|.
T Consensus 205 vlh~Ge 210 (245)
T COG4555 205 VLHKGE 210 (245)
T ss_pred EEecCc
Confidence 999985
No 303
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=8.6e-11 Score=128.17 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=69.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~~v 1239 (1263)
.+..|||||+++++||++|+.. |+++||||||+|||+..+..+.++|.++..+.++|+|||+.. +..+||+++.+
T Consensus 146 ~~~~LS~G~~qrv~laral~~~----p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 146 SGLSLSGGQQQRLCIARAIATE----PEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 5678999999999999999865 899999999999999999999999998876789999999976 56899999999
Q ss_pred E
Q 000833 1240 Y 1240 (1263)
Q Consensus 1240 ~ 1240 (1263)
.
T Consensus 222 ~ 222 (261)
T PRK14263 222 S 222 (261)
T ss_pred e
Confidence 6
No 304
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.19 E-value=5e-11 Score=130.71 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=70.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++.+ +.++|+|||++... .+||++
T Consensus 147 ~~~~~LS~Ge~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i 222 (268)
T PRK10419 147 KRPPQLSGGQLQRVCLARALAVE----PKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRV 222 (268)
T ss_pred CCCccCChHHHHHHHHHHHHhcC----CCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEE
Confidence 35678999999999999999976 899999999999999999999999998753 68999999997655 689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..+.
T Consensus 223 ~~l~~G~ 229 (268)
T PRK10419 223 MVMDNGQ 229 (268)
T ss_pred EEEECCE
Confidence 9998653
No 305
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.19 E-value=5.2e-11 Score=129.03 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhc--cCC-CCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcc
Q 000833 1160 KNIANLSGGEKTLSSLALVFALH--HYK-PTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELAD 1234 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~--~~~-~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad 1234 (1263)
+.+..|||||+++++||.+|+.. ... +|+++||||||+|||+.++..+.++|.++.. +..+|+|||+.. +..+||
T Consensus 122 ~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 122 RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 35678999999999999999851 011 2689999999999999999999999988764 689999999965 668999
Q ss_pred eeEEEEecC
Q 000833 1235 RLVGIYKTD 1243 (1263)
Q Consensus 1235 ~~~~v~~~~ 1243 (1263)
+++.+..|.
T Consensus 202 ~i~~l~~G~ 210 (248)
T PRK03695 202 RVWLLKQGK 210 (248)
T ss_pred EEEEEECCE
Confidence 999998764
No 306
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=5.7e-11 Score=129.97 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=69.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+++..|||||+++++||+.++.. |+++||||||+|||+.++..+.++|.++. .+.++|+|||++.. ..+||++
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~----p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i 221 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVK----PKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFT 221 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEE
Confidence 35679999999999999999865 89999999999999999999999999864 37899999999654 5789999
Q ss_pred EEEEe
Q 000833 1237 VGIYK 1241 (1263)
Q Consensus 1237 ~~v~~ 1241 (1263)
+.+..
T Consensus 222 ~~l~~ 226 (261)
T PRK14258 222 AFFKG 226 (261)
T ss_pred EEEcc
Confidence 99987
No 307
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=5.3e-11 Score=128.09 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=70.5
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
.+..|||||+++++||++++.. |+++||||||+|||+.++..+..+|.++.. +..+|++||++. +..+||+++
T Consensus 126 ~~~~LS~G~~qrl~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~ 201 (235)
T cd03299 126 KPETLSGGEQQRVAIARALVVN----PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVA 201 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 4578999999999999999976 899999999999999999999999998753 689999999965 467899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 202 ~l~~G~ 207 (235)
T cd03299 202 IMLNGK 207 (235)
T ss_pred EEECCE
Confidence 998753
No 308
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.18 E-value=4.4e-11 Score=144.08 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=72.1
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhccee
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
.+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+.. +..+||++
T Consensus 130 ~~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v 205 (490)
T PRK10938 130 DRRFKYLSTGETRKTLLCQALMSE----PDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFA 205 (490)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEE
Confidence 357889999999999999999976 999999999999999999999999998754 679999999964 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 206 ~~l~~G~ 212 (490)
T PRK10938 206 GVLADCT 212 (490)
T ss_pred EEEECCE
Confidence 9998763
No 309
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.18 E-value=4.8e-11 Score=147.65 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=71.8
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||++|.-. ||++||||||++||+.+...+.+.|.++.++.++|+|||++.+...||+++.+..|
T Consensus 484 ~~LSGGQrQRialARAll~~----~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQP----CQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 46999999999999999854 99999999999999999999999999888889999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 560 ~ 560 (588)
T PRK11174 560 Q 560 (588)
T ss_pred e
Confidence 3
No 310
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.18 E-value=5.6e-11 Score=130.77 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=67.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..|||||+++++||++++.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+.. +..+||+++
T Consensus 138 ~~~~~LSgG~~qrv~laraL~~~----p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~ 213 (272)
T PRK15056 138 RQIGELSGGQKKRVFLARAIAQQ----GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTV 213 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 35678999999999999999865 899999999999999999999999998754 679999999964 568999986
Q ss_pred EE
Q 000833 1238 GI 1239 (1263)
Q Consensus 1238 ~v 1239 (1263)
.+
T Consensus 214 ~~ 215 (272)
T PRK15056 214 MV 215 (272)
T ss_pred EE
Confidence 55
No 311
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.18 E-value=4.5e-11 Score=144.15 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=71.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+... ..+||+++
T Consensus 399 ~~~~~LSgG~kqrl~la~al~~~----p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~ 474 (510)
T PRK15439 399 QAARTLSGGNQQKVLIAKCLEAS----PQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVL 474 (510)
T ss_pred CccccCCcHHHHHHHHHHHHhhC----CCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 46789999999999999999876 999999999999999999999999998754 6899999999654 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 475 ~l~~G~ 480 (510)
T PRK15439 475 VMHQGE 480 (510)
T ss_pred EEECCE
Confidence 998764
No 312
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.18 E-value=5.9e-11 Score=146.78 Aligned_cols=76 Identities=25% Similarity=0.360 Sum_probs=70.9
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.-. ||++||||||++||+.+...+.+.|....++..+|+|||++.+...||+++.+..|
T Consensus 468 ~~LSgGqrQRiaLARall~~----~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKD----APILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDG 543 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCC
Confidence 46999999999999999854 99999999999999999999999999888889999999999999999999999765
No 313
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=7.4e-11 Score=129.52 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=71.0
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~v 1239 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++..+.++|+|||+... ..+||+++.+
T Consensus 158 ~~~~LS~G~~qrv~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATD----PEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4678999999999999999876 8999999999999999999999999988767899999999654 5789999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..+.
T Consensus 234 ~~G~ 237 (265)
T PRK14252 234 YMGE 237 (265)
T ss_pred ECCE
Confidence 8653
No 314
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.17 E-value=5.8e-11 Score=143.70 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|+++.. +..+|+|||+.. +..+||+++
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~ 480 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCC----PEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA 480 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcC----CCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE
Confidence 46789999999999999999865 899999999999999999999999988753 678999999964 557899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 481 ~l~~G~ 486 (510)
T PRK09700 481 VFCEGR 486 (510)
T ss_pred EEECCE
Confidence 998764
No 315
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.17 E-value=7.1e-11 Score=129.06 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=69.3
Q ss_pred ccc-cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHH-h-ccee
Q 000833 1161 NIA-NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFE-L-ADRL 1236 (1263)
Q Consensus 1161 ~~~-~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~-~-ad~~ 1236 (1263)
.+. .|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||++.... . ||++
T Consensus 147 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i 222 (252)
T CHL00131 147 NVNEGFSGGEKKRNEILQMALLD----SELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYV 222 (252)
T ss_pred ccccCCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEE
Confidence 344 5999999999999999976 999999999999999999999999988754 689999999977664 4 8999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 223 ~~l~~G~ 229 (252)
T CHL00131 223 HVMQNGK 229 (252)
T ss_pred EEEeCCE
Confidence 9998763
No 316
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.17 E-value=5e-11 Score=143.52 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=71.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch-hHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN-NMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~-~~~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+++.. |+++||||||+|||+.++..+.++|..+.. +..+|+|||+. .+..+||+++
T Consensus 387 ~~~~~LSgGq~qrv~la~al~~~----p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~ 462 (491)
T PRK10982 387 TQIGSLSGGNQQKVIIGRWLLTQ----PEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRIL 462 (491)
T ss_pred cccccCCcHHHHHHHHHHHHhcC----CCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEE
Confidence 46789999999999999999876 999999999999999999999999988753 68999999995 4557999999
Q ss_pred EEEecCC
Q 000833 1238 GIYKTDN 1244 (1263)
Q Consensus 1238 ~v~~~~~ 1244 (1263)
.+..|..
T Consensus 463 ~l~~g~i 469 (491)
T PRK10982 463 VMSNGLV 469 (491)
T ss_pred EEECCEE
Confidence 9987643
No 317
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.17 E-value=8.4e-11 Score=128.31 Aligned_cols=79 Identities=24% Similarity=0.288 Sum_probs=71.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+.....+.++|..+..+.++|+|||++..+..||+++.+.
T Consensus 153 ~~~~LS~G~~qrl~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~ 228 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRK----SSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLS 228 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEE
Confidence 4568999999999999999865 899999999999999999999999988766889999999987777799999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.|.
T Consensus 229 ~G~ 231 (257)
T cd03288 229 RGI 231 (257)
T ss_pred CCE
Confidence 764
No 318
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.17 E-value=7.7e-11 Score=128.34 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=71.0
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...|||||+++++||++++.. |+++||||||++||+.....+.+.|.+...+.++|+|||+...+..||+++.+..
T Consensus 136 g~~LS~G~~qrl~LaRall~~----p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~ 211 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSK----AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEE 211 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecC
Confidence 457999999999999999876 8999999999999999999999999987778899999999877777999999987
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 212 G~ 213 (275)
T cd03289 212 NK 213 (275)
T ss_pred Ce
Confidence 64
No 319
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.17 E-value=6.9e-11 Score=142.31 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=71.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+|+.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||+.. +..+||+++
T Consensus 130 ~~~~~LSgGq~qrv~lA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~ 205 (491)
T PRK10982 130 AKVATLSVSQMQMIEIAKAFSYN----AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEIT 205 (491)
T ss_pred CchhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 46789999999999999999976 999999999999999999999999988754 679999999965 457899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 206 ~l~~G~ 211 (491)
T PRK10982 206 ILRDGQ 211 (491)
T ss_pred EEECCE
Confidence 998764
No 320
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=5.4e-11 Score=143.61 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=71.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|..+.. +..+|+|||+.. +..+||+++
T Consensus 401 ~~~~~LSgG~kqrv~lA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~ 476 (506)
T PRK13549 401 LAIARLSGGNQQKAVLAKCLLLN----PKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVL 476 (506)
T ss_pred cccccCCHHHHHHHHHHHHHhhC----CCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEE
Confidence 46789999999999999999976 899999999999999999999999988754 679999999964 557899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 477 ~l~~G~ 482 (506)
T PRK13549 477 VMHEGK 482 (506)
T ss_pred EEECCE
Confidence 998764
No 321
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=8.4e-11 Score=128.19 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=70.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcch-hHHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRN-NMFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~-~~~~~ad~~~~v 1239 (1263)
++..|||||+++++||.+++.. |++++||||++|||+.++..+.++|.++..+.++|+|||+. .+..+||+++.+
T Consensus 143 ~~~~LS~Gq~qrv~laral~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l 218 (250)
T PRK14266 143 SALGLSGGQQQRLCIARTIAVS----PEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFF 218 (250)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEE
Confidence 5678999999999999999976 89999999999999999999999999887678999999996 456789999888
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 219 ~~G~ 222 (250)
T PRK14266 219 LNGE 222 (250)
T ss_pred ECCe
Confidence 7763
No 322
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.17 E-value=1e-10 Score=124.99 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=71.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
+++..|||||++|++||..|+.. ..+|+++||||||+|||+..+..+.++|.++.+ +..+|+|||++.++..||+++.
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~-~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~ 243 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKR-STGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIID 243 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcC-CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 46779999999999999999853 123689999999999999999999999988764 6899999999988889999998
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..+
T Consensus 244 Lgp~ 247 (261)
T cd03271 244 LGPE 247 (261)
T ss_pred ecCC
Confidence 8643
No 323
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.16 E-value=6.1e-11 Score=143.01 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=71.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+.. +..+||+++
T Consensus 392 ~~~~~LSgGq~qrl~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~ 467 (501)
T PRK11288 392 QLIMNLSGGNQQKAILGRWLSED----MKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV 467 (501)
T ss_pred CccccCCHHHHHHHHHHHHHccC----CCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEE
Confidence 46789999999999999999865 899999999999999999999999988764 679999999965 557899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 468 ~l~~g~ 473 (501)
T PRK11288 468 VMREGR 473 (501)
T ss_pred EEECCE
Confidence 998764
No 324
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.16 E-value=5.9e-11 Score=144.14 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+.+..|||||++|++||.+|+.. |+++||||||++||+..+..+.++|+++.+ +..+|+|||+... ..+||++
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~~----p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri 227 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLTR----PELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRV 227 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhcC----CCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEE
Confidence 46789999999999999999976 999999999999999999999999998753 6799999999655 5689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 228 ~~l~~G~ 234 (529)
T PRK15134 228 AVMQNGR 234 (529)
T ss_pred EEEECCE
Confidence 9998763
No 325
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.16 E-value=7.4e-11 Score=142.27 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|+++.. +..+|+|||+... ..+||+++
T Consensus 136 ~~~~~LSgG~~qrv~la~aL~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~ 211 (510)
T PRK15439 136 SSAGSLEVADRQIVEILRGLMRD----SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRIS 211 (510)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 46789999999999999999976 999999999999999999999999998754 6799999999654 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 212 ~l~~G~ 217 (510)
T PRK15439 212 VMRDGT 217 (510)
T ss_pred EEECCE
Confidence 998764
No 326
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.16 E-value=5.8e-11 Score=144.06 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=71.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+.+..||||||+|++||.+|+.. |+++||||||++||+.++..+.++|.++.+ +..+|+|||+...+ .+||++
T Consensus 164 ~~~~~LSgGq~qrv~iA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 164 HIARDLSGGEKQRVVLARQLAKE----PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 46789999999999999999976 999999999999999999999999998743 67999999997655 689999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 240 ~~l~~G~ 246 (520)
T TIGR03269 240 IWLENGE 246 (520)
T ss_pred EEEeCCE
Confidence 9998753
No 327
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.16 E-value=1.1e-10 Score=122.93 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=67.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHH-HHHHhcC-CCeEEEEEcchhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGH-YVKDRTK-DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~-~l~~~~~-~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
.+..|||||+++++||.+++.. |+++|||||+++||+.+...+.. ++..+.. +..+|+|||++.....||+++.
T Consensus 124 ~~~~lS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~ 199 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSD----ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVV 199 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEE
Confidence 4668999999999999999976 89999999999999999999988 4665543 6899999999877766999998
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 200 l~~G 203 (204)
T cd03250 200 LDNG 203 (204)
T ss_pred EeCC
Confidence 8764
No 328
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.16 E-value=9.3e-11 Score=127.38 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=69.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhH-HHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
++..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++. .+.++|+|||+... ..+||+++.
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~----p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~ 215 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVN----PDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAW 215 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhC----CCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEE
Confidence 5678999999999999999865 89999999999999999999999998875 36899999999655 578999998
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 216 l~~G~ 220 (264)
T PRK13546 216 IEGGK 220 (264)
T ss_pred EECCE
Confidence 87663
No 329
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.16 E-value=7.4e-11 Score=142.25 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..|||||++|++||.+|+.. |+++||||||++||+.++..+.++|.++.. +..+|+|||+.. +..+||+++
T Consensus 137 ~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~ 212 (501)
T PRK10762 137 KLVGELSIGEQQMVEIAKVLSFE----SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVT 212 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 46789999999999999999976 999999999999999999999999988754 678999999964 557899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 213 ~l~~G~ 218 (501)
T PRK10762 213 VFRDGQ 218 (501)
T ss_pred EEeCCE
Confidence 998763
No 330
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.16 E-value=7.8e-11 Score=126.92 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=70.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+..|||||+++++||+.|+.. ||++|||||++|||+.++..+.++|.++.. +.++|++||++.. ..+||+++
T Consensus 127 ~~~~lS~G~~qrl~laral~~~----p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~ 202 (237)
T TIGR00968 127 YPNQLSGGQRQRVALARALAVE----PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV 202 (237)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 4568999999999999999966 899999999999999999999999998754 6899999999764 68899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 203 ~l~~g~ 208 (237)
T TIGR00968 203 VMSNGK 208 (237)
T ss_pred EEECCE
Confidence 998664
No 331
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.16 E-value=7.9e-11 Score=142.51 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=71.8
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhccee
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
.+++..||||||+|++||..|+.. |+++||||||+|||+.++..+.++|+++.. +..+|+|||+... ..+||++
T Consensus 140 ~~~~~~LSgG~~qrv~ia~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v 215 (510)
T PRK09700 140 DEKVANLSISHKQMLEIAKTLMLD----AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRY 215 (510)
T ss_pred ccchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 356789999999999999999976 999999999999999999999999998754 6789999999654 5789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 216 ~~l~~G~ 222 (510)
T PRK09700 216 TVMKDGS 222 (510)
T ss_pred EEEECCE
Confidence 9998763
No 332
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=1e-10 Score=122.34 Aligned_cols=80 Identities=15% Similarity=0.305 Sum_probs=68.6
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc--hhHHHhcce
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR--NNMFELADR 1235 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~--~~~~~~ad~ 1235 (1263)
..+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++.+ +..+|++||+ +.+..+||+
T Consensus 114 ~~~~~LS~Ge~qrl~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 114 EFVRGISGGERKRVSIAEALVSR----ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred cchhhCCHHHHHHHHHHHHHhhC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 45678999999999999999976 899999999999999999999999998764 4566776655 466789999
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
++.+..|.
T Consensus 190 i~~l~~G~ 197 (202)
T cd03233 190 VLVLYEGR 197 (202)
T ss_pred EEEEECCE
Confidence 99998763
No 333
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1e-10 Score=127.23 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=71.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~v 1239 (1263)
.+..|||||+++++||.+|+.. |+++||||||+|||+.....+.++|.++..+.++|+|||+...+ .+||+++.+
T Consensus 150 ~~~~LS~G~~qrl~laral~~~----P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l 225 (257)
T PRK14246 150 PASQLSGGQQQRLTIARALALK----PKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFL 225 (257)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 5678999999999999999865 89999999999999999999999999887678999999997655 789999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..+.
T Consensus 226 ~~g~ 229 (257)
T PRK14246 226 YNGE 229 (257)
T ss_pred ECCE
Confidence 8763
No 334
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=9.2e-11 Score=130.88 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=69.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
..+..|||||+++++||.+|+.. |+++|||||++|||+.+...+.++|+++.++.++|+|||+... ..+||+++.
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~----p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~ 271 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVD----PEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAV 271 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEE
Confidence 35678999999999999999976 8999999999999999999999999988777899999999755 578999754
Q ss_pred -EEec
Q 000833 1239 -IYKT 1242 (1263)
Q Consensus 1239 -v~~~ 1242 (1263)
+..|
T Consensus 272 ~l~~G 276 (305)
T PRK14264 272 FLTGG 276 (305)
T ss_pred EecCC
Confidence 4554
No 335
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.16 E-value=9.8e-11 Score=124.67 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=67.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHH--HHHHhcC-CCeEEEEEcchhHHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGH--YVKDRTK-DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~--~l~~~~~-~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
++..|||||+++++||.+++.. |+++||||||+|||+.++..+.+ ++..+.. +..+|+|||+......||+++
T Consensus 137 ~~~~LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~ 212 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQN----TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWII 212 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhhC----CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEE
Confidence 4678999999999999999876 89999999999999999999988 5655543 689999999987777899998
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 213 ~l~~G 217 (218)
T cd03290 213 AMKDG 217 (218)
T ss_pred EecCC
Confidence 87654
No 336
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.15 E-value=1.9e-11 Score=129.39 Aligned_cols=49 Identities=29% Similarity=0.696 Sum_probs=42.1
Q ss_pred EEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhh
Q 000833 24 EMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ 74 (1263)
Q Consensus 24 ~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~ 74 (1263)
+|+|+||+||.+.++ +|++|+|+|+||||||||||++||.|+||+.+..
T Consensus 1 ~i~i~nf~~~~~~~i--~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEI--DFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEEE--E--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceEE--EcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 589999999998775 8999999999999999999999999999876544
No 337
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.15 E-value=7e-11 Score=142.75 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=71.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..||||||+|++||++++.. |+++||||||+|||+.++..+.++|..+.. +..+|+|||+.. +..+||+++
T Consensus 399 ~~~~~LSgGqkqrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~ 474 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLTN----PRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVL 474 (500)
T ss_pred CccccCCHHHHHHHHHHHHHhhC----CCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 46779999999999999999976 899999999999999999999999988754 678999999965 557899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 475 ~l~~G~ 480 (500)
T TIGR02633 475 VIGEGK 480 (500)
T ss_pred EEECCE
Confidence 998664
No 338
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.15 E-value=9.2e-11 Score=141.46 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=71.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..|||||++|++||.+|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+... ..+||+++
T Consensus 136 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~ 211 (501)
T PRK11288 136 TPLKYLSIGQRQMVEIAKALARN----ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAIT 211 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHHhC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 46789999999999999999976 999999999999999999999999998754 6799999999655 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 212 ~l~~G~ 217 (501)
T PRK11288 212 VFKDGR 217 (501)
T ss_pred EEECCE
Confidence 998764
No 339
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.15 E-value=6.9e-11 Score=143.60 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+.. +..+||++
T Consensus 421 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 421 RYPAEFSGGQRQRIAIARALILK----PSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred cCCccCCHHHHHHHHHHHHHhCC----CCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 36779999999999999999965 899999999999999999999999998753 679999999965 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 497 ~~l~~G~ 503 (529)
T PRK15134 497 IVLRQGE 503 (529)
T ss_pred EEEECCE
Confidence 9998764
No 340
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.15 E-value=7.7e-11 Score=142.10 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh-HHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+++.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+.. +..+||+++
T Consensus 391 ~~~~~LSgGekqrv~lA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~ 466 (501)
T PRK10762 391 QAIGLLSGGNQQKVAIARGLMTR----PKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRIL 466 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHhhC----CCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE
Confidence 46789999999999999999876 899999999999999999999999998754 678999999954 557899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 467 ~l~~G~ 472 (501)
T PRK10762 467 VMHEGR 472 (501)
T ss_pred EEECCE
Confidence 998764
No 341
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=8.6e-11 Score=141.87 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=71.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+|+.. |+++||||||++||+.++..+.++|.++.+ +..+|+|||+... ..+||+++
T Consensus 139 ~~~~~LSgGqkqrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~ 214 (506)
T PRK13549 139 TPVGNLGLGQQQLVEIAKALNKQ----ARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTIC 214 (506)
T ss_pred cchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEE
Confidence 46789999999999999999866 999999999999999999999999988753 6789999999655 46899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 215 ~l~~G~ 220 (506)
T PRK13549 215 VIRDGR 220 (506)
T ss_pred EEECCE
Confidence 998763
No 342
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.15 E-value=7.8e-11 Score=124.11 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=68.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
+++..|||||+++++||++|+.. ||++|||||++++|+.+...+..+|.+..++..+|+|||++... .+||+++.
T Consensus 100 ~~~~~lS~G~~qrv~la~al~~~----p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~ 175 (213)
T PRK15177 100 DRVSEYSVTMKTHLAFAINLLLP----CRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGV 175 (213)
T ss_pred chHhhcCHHHHHHHHHHHHHhcC----CCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEE
Confidence 46778999999999999999865 89999999999999999999999876544445699999997655 68999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..|.
T Consensus 176 l~~G~ 180 (213)
T PRK15177 176 LLHGK 180 (213)
T ss_pred EECCe
Confidence 98764
No 343
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.15 E-value=8.2e-11 Score=145.29 Aligned_cols=78 Identities=26% Similarity=0.325 Sum_probs=71.7
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...||||||||++||++|... ||++||||||++||+.+...+.+.|..+.++.++|+|||++..+..||+++.+..
T Consensus 469 g~~LSgGq~QRialARall~~----~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~ 544 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKD----PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDN 544 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEEC
Confidence 346999999999999999854 9999999999999999999999999888778999999999999999999999987
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 545 G~ 546 (588)
T PRK13657 545 GR 546 (588)
T ss_pred CE
Confidence 64
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=99.15 E-value=7e-11 Score=142.78 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=69.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad~~ 1236 (1263)
+++..|||||+||++||.+|+.. |+++||||||+|||+.++..+.++|+++.. +..+|+|||+...+ .+||++
T Consensus 449 ~~~~~LSGGe~QRvaiAraL~~~----p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrv 524 (590)
T PRK13409 449 KNVKDLSGGELQRVAIAACLSRD----ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRL 524 (590)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 46789999999999999999865 999999999999999999999999998854 67999999997654 689999
Q ss_pred EEEEe
Q 000833 1237 VGIYK 1241 (1263)
Q Consensus 1237 ~~v~~ 1241 (1263)
+.+..
T Consensus 525 ivl~~ 529 (590)
T PRK13409 525 MVFEG 529 (590)
T ss_pred EEEcC
Confidence 98864
No 345
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=8.6e-11 Score=130.72 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=72.4
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...|||||++|.+||+++-.. +|+.||||||.|||+.+.+.+...|.+...+..+|+|||+..-.+.+|+++.|..
T Consensus 472 G~~LSGGE~rRLAlAR~LL~d----apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~ 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHD----APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDN 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcC----CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEEC
Confidence 347899999999999999765 9999999999999999999999999998889999999999888999999999998
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 548 Gk 549 (573)
T COG4987 548 GK 549 (573)
T ss_pred Ce
Confidence 74
No 346
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.15 E-value=8.3e-11 Score=145.52 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.8
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.-. ||++||||||++||+.+...+.+.|..+..+.++|+|||++.+...||+++.+..|
T Consensus 479 ~~LSGGqrQRi~LARall~~----~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRD----SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhC----CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence 46999999999999999865 99999999999999999999999999887789999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 555 ~ 555 (582)
T PRK11176 555 E 555 (582)
T ss_pred E
Confidence 3
No 347
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.15 E-value=7.5e-11 Score=145.11 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=72.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchh-HHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNN-MFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~-~~~~ad~~ 1236 (1263)
+++..|||||+||++||.+|+.. |+++||||||++||+..+..+.++|+++.. +..+|+|||+.. +..+||++
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~----P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri 239 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCR----PAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRV 239 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCC----CCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 46789999999999999999977 899999999999999999999999998863 689999999965 45789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 240 ~vl~~G~ 246 (623)
T PRK10261 240 LVMYQGE 246 (623)
T ss_pred EEeeCCe
Confidence 9998764
No 348
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.14 E-value=8.6e-11 Score=144.61 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+++..||||||||++||++|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||+... ..+||++
T Consensus 459 ~~~~~LSgGqrQRv~iAraL~~~----p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri 534 (623)
T PRK10261 459 RYPHEFSGGQRQRICIARALALN----PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRV 534 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 46789999999999999999976 899999999999999999999999988753 6799999999654 5789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 535 ~vl~~G~ 541 (623)
T PRK10261 535 AVMYLGQ 541 (623)
T ss_pred EEEECCE
Confidence 9998764
No 349
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.14 E-value=8.9e-11 Score=122.91 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=65.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch-hHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN-NMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~-~~~~~ad~~~~ 1238 (1263)
++..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++.. +..+|+|||++ .+...+++++.
T Consensus 122 ~~~~LS~G~~qrl~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 122 PVAQLSAGQQRRVALARLLLSG----RPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred chhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEe
Confidence 5678999999999999999965 899999999999999999999999988754 67899999985 45577888764
Q ss_pred E
Q 000833 1239 I 1239 (1263)
Q Consensus 1239 v 1239 (1263)
.
T Consensus 198 ~ 198 (201)
T cd03231 198 L 198 (201)
T ss_pred c
Confidence 3
No 350
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.14 E-value=1.7e-10 Score=124.51 Aligned_cols=78 Identities=24% Similarity=0.385 Sum_probs=69.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
.+..|||||+++++||++|+.. |+++||||||++||+.++..+..+|+++.+ +..+|+|||+.... .+||+++.
T Consensus 136 ~~~~LS~G~~qrv~laral~~~----p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~ 211 (255)
T cd03236 136 NIDQLSGGELQRVAIAAALARD----ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHC 211 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHHhC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 5678999999999999999865 899999999999999999999999998764 68999999997655 58999998
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+...
T Consensus 212 l~~~ 215 (255)
T cd03236 212 LYGE 215 (255)
T ss_pred ECCC
Confidence 8643
No 351
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.14 E-value=1.6e-10 Score=126.47 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=68.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHH-HHHhcCCCeEEEEEcchhHHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHY-VKDRTKDAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~-l~~~~~~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.+. +..+..+..+|+|||+......||+++.+
T Consensus 156 ~~~~LSgGq~qrv~lAraL~~~----p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 156 GGITLSGGQRARISLARAVYKD----ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 4568999999999999999865 899999999999999999999875 45555578999999998777889999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 232 ~~G~ 235 (282)
T cd03291 232 HEGS 235 (282)
T ss_pred ECCE
Confidence 7764
No 352
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.14 E-value=1e-10 Score=141.32 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=71.1
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhH-HHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|+++.+ +..+|+|||+... ..+||+++
T Consensus 137 ~~~~~LSgG~~qrv~iA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~ 212 (500)
T TIGR02633 137 RPVGDYGGGQQQLVEIAKALNKQ----ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTIC 212 (500)
T ss_pred CchhhCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEE
Confidence 35779999999999999999976 899999999999999999999999998754 6799999999654 57899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 213 ~l~~G~ 218 (500)
T TIGR02633 213 VIRDGQ 218 (500)
T ss_pred EEeCCe
Confidence 998764
No 353
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.13 E-value=7.8e-11 Score=123.35 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=65.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
++..|||||+++++||++++.. ||++||||||+|||+..+..+.++|.++. .+.++|+|||++.....||...
T Consensus 124 ~~~~LS~G~~~rv~laral~~~----p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 124 PCGLLSSGQKRQVALLRLWMSK----AKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred ChhhcCHHHHHHHHHHHHHhcC----CCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 5668999999999999999976 99999999999999999999999999864 4689999999998888888754
No 354
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.13 E-value=1e-10 Score=141.87 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=70.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~ad~~ 1236 (1263)
+++..|||||++|++||++|+.. |+++||||||+|||+.++..+.++|.++.. +..+|+|||+... ..+||++
T Consensus 423 ~~~~~LSgGq~qrv~laral~~~----p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i 498 (520)
T TIGR03269 423 KYPDELSEGERHRVALAQVLIKE----PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRA 498 (520)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEE
Confidence 46789999999999999999866 899999999999999999999999988753 6799999999654 5789999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 499 ~~l~~G~ 505 (520)
T TIGR03269 499 ALMRDGK 505 (520)
T ss_pred EEEECCE
Confidence 9998653
No 355
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.13 E-value=6.5e-11 Score=122.97 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=58.2
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN 1228 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~ 1228 (1263)
.+..|||||+++++||++|+.. |+++||||||+|||+.++..+.++|.++.+ +..+|+|||++.
T Consensus 124 ~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 124 PTHCLSGGEKKRVAIAGAVAMR----PDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 5678999999999999999865 899999999999999999999999998754 689999999964
No 356
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.13 E-value=1.1e-10 Score=122.78 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=64.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
+++..|||||+++++||++++.. |+++||||||++||+.++..+.++|+++.. +..+|+|||+...+ ++++|.+
T Consensus 125 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~ 200 (204)
T PRK13538 125 VPVRQLSAGQQRRVALARLWLTR----APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKL 200 (204)
T ss_pred CChhhcCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEE
Confidence 35678999999999999999876 999999999999999999999999998753 67999999997666 5555554
Q ss_pred E
Q 000833 1238 G 1238 (1263)
Q Consensus 1238 ~ 1238 (1263)
.
T Consensus 201 ~ 201 (204)
T PRK13538 201 R 201 (204)
T ss_pred e
Confidence 4
No 357
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.11 E-value=1.6e-10 Score=141.65 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=72.0
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...||||||||++||++|... ||++||||||++||+.+...+.+.|.++..+..+|+|||++.....||+++.+..
T Consensus 469 ~~~LSgGq~qrl~lARall~~----p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~ 544 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKN----APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQ 544 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEEC
Confidence 457999999999999999865 9999999999999999999999999888778999999999988899999999987
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 545 G~ 546 (585)
T TIGR01192 545 GR 546 (585)
T ss_pred CE
Confidence 64
No 358
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.11 E-value=1.6e-10 Score=143.11 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=71.5
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.-. ||++||||||++||+.+...+.+.|..+.++.++|+|||++.....||+++.+..|
T Consensus 475 ~~LSGGqrQRialARaLl~~----~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G 550 (592)
T PRK10790 475 NNLSVGQKQLLALARVLVQT----PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRG 550 (592)
T ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence 46999999999999999854 99999999999999999999999999887789999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 551 ~ 551 (592)
T PRK10790 551 Q 551 (592)
T ss_pred E
Confidence 4
No 359
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.11 E-value=1.4e-10 Score=121.35 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=69.1
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCC---CeEEEEEcch-hHHHhcc
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKD---AQFIIISLRN-NMFELAD 1234 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~---~q~i~ith~~-~~~~~ad 1234 (1263)
..++..|||||++++.++.++|++.+.+||++|||||+++||+.++..+.++|...... .++|+|||+. .+...||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 34677999999999999988888777889999999999999999999999999887542 5899999994 5667777
Q ss_pred ee--EEEEec
Q 000833 1235 RL--VGIYKT 1242 (1263)
Q Consensus 1235 ~~--~~v~~~ 1242 (1263)
++ +.+..|
T Consensus 201 ~~~v~~l~~g 210 (213)
T cd03277 201 KMTVLCVYNG 210 (213)
T ss_pred ceEEEEEecC
Confidence 54 444434
No 360
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.11 E-value=3e-10 Score=119.96 Aligned_cols=84 Identities=25% Similarity=0.245 Sum_probs=69.3
Q ss_pred ccccccCChhHHHHHHHHHHHHhcc------CCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH-
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHH------YKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF- 1230 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~------~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~- 1230 (1263)
.+++..|||||+++++||.++|..- -.+|+++|||||+++||+.....+.++|.++.+ +..+|+|||++...
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~ 197 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKE 197 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHH
Confidence 4567889999999999999998532 124679999999999999999999999988865 78999999997665
Q ss_pred HhcceeEEEEec
Q 000833 1231 ELADRLVGIYKT 1242 (1263)
Q Consensus 1231 ~~ad~~~~v~~~ 1242 (1263)
.+||+++.+..+
T Consensus 198 ~~~~~i~~~~~~ 209 (213)
T cd03279 198 RIPQRLEVIKTP 209 (213)
T ss_pred hhCcEEEEEecC
Confidence 567777666644
No 361
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.5e-10 Score=133.90 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=73.2
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
..+||||||||+|||++|.-. |.++||||.|++||...-..+-+.|.++.+++++|+|.|+..+...||+++.|.+
T Consensus 602 G~qLSGGQKQRIAIARALlr~----P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 602 GSQLSGGQKQRIAIARALLRN----PRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDK 677 (716)
T ss_pred cccccchHHHHHHHHHHHhcC----CCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcC
Confidence 458999999999999999855 9999999999999999999999999888888999999999999999999999998
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 678 G~ 679 (716)
T KOG0058|consen 678 GR 679 (716)
T ss_pred Ce
Confidence 84
No 362
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.10 E-value=2e-10 Score=118.98 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=69.2
Q ss_pred CccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC---CC-eEEEEEcchhHHH
Q 000833 1156 KKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK---DA-QFIIISLRNNMFE 1231 (1263)
Q Consensus 1156 ~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~---~~-q~i~ith~~~~~~ 1231 (1263)
....+++..|||||+++++||++++++.+.+|+++|||||++|||+.++..+.++|.+... +. .+|++||+...+.
T Consensus 101 ~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 101 KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc
Confidence 3345678899999999999999998776678999999999999999999999999988642 33 5677779976655
Q ss_pred hcceeEEEEe
Q 000833 1232 LADRLVGIYK 1241 (1263)
Q Consensus 1232 ~ad~~~~v~~ 1241 (1263)
..|++..+..
T Consensus 181 ~~d~v~~~~~ 190 (198)
T cd03276 181 SSDDVKVFRM 190 (198)
T ss_pred cccceeEEEe
Confidence 5587655444
No 363
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.8e-10 Score=128.27 Aligned_cols=78 Identities=28% Similarity=0.354 Sum_probs=72.4
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...|||||||+++||++|. +.||+++|||||++||...-..+.++|....++.++|+|-|+..+...||.++++.+
T Consensus 485 G~~LSGGekQrvslaRa~l----Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 485 GLMLSGGEKQRVSLARAFL----KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDN 560 (591)
T ss_pred ccccccchHHHHHHHHHHh----cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEEC
Confidence 4478999999999999997 559999999999999999999999999887778999999999999999999999998
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 561 G~ 562 (591)
T KOG0057|consen 561 GT 562 (591)
T ss_pred Ce
Confidence 74
No 364
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.10 E-value=1.5e-10 Score=121.77 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=66.1
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
++..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++. .+..+|+|||+...... |+++.+
T Consensus 124 ~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~ 198 (207)
T PRK13539 124 PFGYLSAGQKRRVALARLLVSN----RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDL 198 (207)
T ss_pred ChhhcCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEee
Confidence 5668999999999999999876 89999999999999999999999998764 46899999999766655 888777
Q ss_pred E
Q 000833 1240 Y 1240 (1263)
Q Consensus 1240 ~ 1240 (1263)
.
T Consensus 199 ~ 199 (207)
T PRK13539 199 G 199 (207)
T ss_pred c
Confidence 4
No 365
>PRK13409 putative ATPase RIL; Provisional
Probab=99.10 E-value=2.5e-10 Score=138.08 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=70.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..|||||++|++||.+++.. |++|||||||++||+..+..+.++|+++..+..+|+|||+... ..+||+++.
T Consensus 208 ~~~~~LSgGe~qrv~ia~al~~~----p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~v 283 (590)
T PRK13409 208 RDISELSGGELQRVAIAAALLRD----ADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHI 283 (590)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 46789999999999999999866 8999999999999999999999999987657899999999654 578999988
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..+
T Consensus 284 l~~~ 287 (590)
T PRK13409 284 AYGE 287 (590)
T ss_pred EeCC
Confidence 8653
No 366
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.1e-10 Score=141.17 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=68.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
+++..||||||+|++||.+|+.. |+++||||||+|||+..+..+.++|.++. ..+|+|||+...+ .+||+++.
T Consensus 426 ~~~~~LSgGekqRl~La~~l~~~----p~lLlLDEPt~~LD~~~~~~l~~~L~~~~--gtvi~vSHd~~~~~~~~d~i~~ 499 (638)
T PRK10636 426 EETRRFSGGEKARLVLALIVWQR----PNLLLLDEPTNHLDLDMRQALTEALIDFE--GALVVVSHDRHLLRSTTDDLYL 499 (638)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHhCCEEEE
Confidence 46789999999999999999865 99999999999999999999999998873 4899999996654 68999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 500 l~~G 503 (638)
T PRK10636 500 VHDG 503 (638)
T ss_pred EECC
Confidence 9865
No 367
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.09 E-value=2.3e-10 Score=140.17 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=71.9
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...||||||+|++||++++.. ||++||||||++||+.+...+.+.|..+.++.++|+|||++.....||+++.+..
T Consensus 449 g~~LSgGq~qRi~lARall~~----~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~ 524 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLN----AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQH 524 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcC----CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeC
Confidence 457999999999999999865 9999999999999999999999999988778899999999988999999999987
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 525 G~ 526 (569)
T PRK10789 525 GH 526 (569)
T ss_pred CE
Confidence 63
No 368
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.09 E-value=1.7e-10 Score=139.07 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=70.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-C-CeEEEEEcchhHH-H-hcce
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-D-AQFIIISLRNNMF-E-LADR 1235 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~-~q~i~ith~~~~~-~-~ad~ 1235 (1263)
+++..||||||+|++||.+++.. |+++||||||+|||+.++..+.++|.++.. + .++|+|||+...+ . +||+
T Consensus 397 ~~~~~LSgGq~qrv~la~al~~~----p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~ 472 (490)
T PRK10938 397 APFHSLSWGQQRLALIVRALVKH----PTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHR 472 (490)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhee
Confidence 46789999999999999999876 999999999999999999999999998764 3 4699999997655 4 5899
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
++.+..|.
T Consensus 473 v~~l~~G~ 480 (490)
T PRK10938 473 LEFVPDGD 480 (490)
T ss_pred EEEecCCc
Confidence 99988764
No 369
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.09 E-value=3.4e-10 Score=113.54 Aligned_cols=80 Identities=44% Similarity=0.643 Sum_probs=71.9
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
.|||||+++++|+.+++.....+|+++|||||++|+|+.....+...|.+... +.++|++||++.+...+|+++.+.+.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~~ 156 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKKV 156 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEEE
Confidence 59999999999999999765567899999999999999999999999887643 58999999999999999999999875
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 157 ~ 157 (162)
T cd03227 157 I 157 (162)
T ss_pred e
Confidence 4
No 370
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.09 E-value=1.9e-10 Score=115.87 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=83.9
Q ss_pred ccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc-hhHHHhc
Q 000833 1157 KSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR-NNMFELA 1233 (1263)
Q Consensus 1157 ~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~-~~~~~~a 1233 (1263)
....+...||+|++.++-||+++|.. |.+++||||.|||.+.....++++|+++.+ +..|++|-|+ +-+|.+|
T Consensus 142 ~a~~~A~~LsyG~qR~LEIArALa~~----P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~ 217 (250)
T COG0411 142 LADRPAGNLSYGQQRRLEIARALATQ----PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLA 217 (250)
T ss_pred hhcchhhcCChhHhHHHHHHHHHhcC----CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhc
Confidence 34456779999999999999999987 899999999999999999999999999875 4899999999 6778999
Q ss_pred ceeEEEEecC----CCceeEEecCCccccc
Q 000833 1234 DRLVGIYKTD----NCTKSITINPGSFTVC 1259 (1263)
Q Consensus 1234 d~~~~v~~~~----~~s~~~~~~~~~~~~~ 1259 (1263)
||++.+..|. |.-..|.-||.+...|
T Consensus 218 dri~Vl~~G~~IAeG~P~eV~~dp~VieAY 247 (250)
T COG0411 218 DRIVVLNYGEVIAEGTPEEVRNNPRVIEAY 247 (250)
T ss_pred cEEEeccCCcCcccCCHHHHhcCHHhHHHh
Confidence 9999999985 3334466666665554
No 371
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.09 E-value=2.2e-10 Score=144.25 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=71.6
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||++|.-. ||++||||||++||+.+...+.+.|.++.++.++|+|||++.+...||+++.+..|
T Consensus 600 ~~LSgGQrQRlalARall~~----p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRD----PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 47999999999999999844 99999999999999999999999999888889999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 676 ~ 676 (694)
T TIGR03375 676 R 676 (694)
T ss_pred E
Confidence 3
No 372
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.09 E-value=3.9e-10 Score=112.68 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=72.6
Q ss_pred ccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH-HHhc
Q 000833 1157 KSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM-FELA 1233 (1263)
Q Consensus 1157 ~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~-~~~a 1233 (1263)
...+....|||||+|++|||++|... |.+++||||+.||-|..+..|++.|+++.+ ...+++|-.+-.. ..+|
T Consensus 129 r~~~~aG~LSGGEQQMLAiaRALm~~----PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~ia 204 (237)
T COG0410 129 RRNQRAGTLSGGEQQMLAIARALMSR----PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIA 204 (237)
T ss_pred HhcCcccCCChHHHHHHHHHHHHhcC----CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhh
Confidence 34556789999999999999999876 889999999999999999999999999885 4588888888544 5799
Q ss_pred ceeEEEEecC
Q 000833 1234 DRLVGIYKTD 1243 (1263)
Q Consensus 1234 d~~~~v~~~~ 1243 (1263)
||.|.+..|.
T Consensus 205 Dr~yvle~Gr 214 (237)
T COG0410 205 DRGYVLENGR 214 (237)
T ss_pred CEEEEEeCCE
Confidence 9999999885
No 373
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.4e-10 Score=112.39 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=69.7
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhc--ceeEEEE
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELA--DRLVGIY 1240 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~a--d~~~~v~ 1240 (1263)
-+|||||-|.-|+-++++. |.++||||||+|||....+.+++-|..+.. +.-|++|||...+..+. |+++.+.
T Consensus 144 GFSGGEkKR~EilQ~~~le----Pkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~ 219 (251)
T COG0396 144 GFSGGEKKRNEILQLLLLE----PKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLY 219 (251)
T ss_pred CcCcchHHHHHHHHHHhcC----CCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEE
Confidence 4799999999999999987 899999999999999999999999998764 88999999999999875 9999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.|.
T Consensus 220 ~Gr 222 (251)
T COG0396 220 DGR 222 (251)
T ss_pred CCE
Confidence 874
No 374
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.08 E-value=2.1e-10 Score=141.06 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=72.4
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecC
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
+||||||||+|||+.++-. |++++|||||++||+...+.+.+.|...+.+.+.|+|+|+..+...||+++.+..|.
T Consensus 489 qLSGGQKQRIAIARalv~~----P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRN----PKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred CCChHHHHHHHHHHHHHhC----CCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCE
Confidence 6999999999999999866 999999999999999999999999999999999999999999999999999999985
No 375
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.08 E-value=1.4e-10 Score=115.45 Aligned_cols=82 Identities=27% Similarity=0.289 Sum_probs=73.3
Q ss_pred cccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch-hHHHhcce
Q 000833 1158 SWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN-NMFELADR 1235 (1263)
Q Consensus 1158 ~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~-~~~~~ad~ 1235 (1263)
..+++..||-|..|.+.+.-.+++. |.++|||||++||||.|++.+-++|.++.. +..+|+.||+. .+-.+||+
T Consensus 124 ~~~kIk~LSKGnqQKIQfisaviHe----PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 124 KTKKIKELSKGNQQKIQFISAVIHE----PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred ccchHHHhhhhhhHHHHHHHHHhcC----CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhh
Confidence 3457889999999999998888876 899999999999999999999999998875 89999999994 56689999
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
+.-+.+|.
T Consensus 200 llmL~kG~ 207 (300)
T COG4152 200 LLMLKKGQ 207 (300)
T ss_pred hheecCCc
Confidence 99999885
No 376
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.07 E-value=2.9e-10 Score=139.28 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=72.1
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...||||||||++||+++... ||++||||||++||+.+...+.+.|....++.++|+|||++.....||+++.+..
T Consensus 473 g~~LSgGqrqRialARall~~----~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~ 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHD----APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDN 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeC
Confidence 457999999999999999855 9999999999999999999999999988878999999999988889999999987
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 549 G~ 550 (574)
T PRK11160 549 GQ 550 (574)
T ss_pred Ce
Confidence 64
No 377
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.07 E-value=1.9e-10 Score=120.22 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=61.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
++..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.++. .+..+|+|||++. ...+++++
T Consensus 124 ~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~~~ 196 (198)
T TIGR01189 124 PAAQLSAGQQRRLALARLWLSR----APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GLVEAREL 196 (198)
T ss_pred ChhhcCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cccceEEe
Confidence 5678999999999999999866 99999999999999999999999998864 4679999999973 23345543
No 378
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.07 E-value=3.1e-10 Score=128.67 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=74.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcc-hhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLR-NNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~-~~~~~~ad~~~ 1237 (1263)
.++..||+||+|+|+||.+++.. +.++|||||||+|+..-+..++++|+++. .+.-+|+|||+ ++++++||++.
T Consensus 141 ~~v~~LsiaqrQ~VeIArAl~~~----arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Drit 216 (500)
T COG1129 141 TLVGDLSIAQRQMVEIARALSFD----ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRIT 216 (500)
T ss_pred hhhhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEE
Confidence 46889999999999999999976 88999999999999999999999999987 48999999999 79999999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 217 VlRDG~ 222 (500)
T COG1129 217 VLRDGR 222 (500)
T ss_pred EEeCCE
Confidence 988875
No 379
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.07 E-value=3.7e-10 Score=139.76 Aligned_cols=78 Identities=26% Similarity=0.330 Sum_probs=71.9
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...||||||||++||+++.-. ||++||||||++||+.+...+.+.|..+.++.++|+|||++.....||+++.+..
T Consensus 474 g~~LSgGq~Qrl~laRal~~~----~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~ 549 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKD----APILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQ 549 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhC----CCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 347999999999999999865 9999999999999999999999999988778999999999999999999999987
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 550 g~ 551 (576)
T TIGR02204 550 GR 551 (576)
T ss_pred CE
Confidence 64
No 380
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.07 E-value=3.4e-10 Score=138.22 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=70.9
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
...||||||||++||+++... ||++||||||++||+.+...+.+.|.++. ++.++|+|||++.....||+++.+.
T Consensus 452 g~~LSgGq~qrl~lARall~~----~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~ 527 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGD----PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQ 527 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 457999999999999999755 99999999999999999999999998875 5789999999998889999999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.|.
T Consensus 528 ~G~ 530 (544)
T TIGR01842 528 DGR 530 (544)
T ss_pred CCE
Confidence 764
No 381
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=3.7e-10 Score=137.26 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=69.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..|||||++|++||.+++.. |+++||||||+|||+.++..+.++|.++ +..+|+|||+... ..+||+++.
T Consensus 434 ~~~~~LSgGq~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~ 507 (530)
T PRK15064 434 KSVKVLSGGEKGRMLFGKLMMQK----PNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIE 507 (530)
T ss_pred CcccccCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEE
Confidence 46789999999999999999865 9999999999999999999999999887 3589999999755 468999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..+.
T Consensus 508 l~~g~ 512 (530)
T PRK15064 508 ITPDG 512 (530)
T ss_pred EECCe
Confidence 98653
No 382
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.05 E-value=3.6e-10 Score=138.97 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=71.8
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...||||||||++||++|.-. ||++||||||++||+.+...+.+.|..+.++.++|+|+|++.+...||+++.+..
T Consensus 463 G~~LSgGQrQrlaiARall~~----~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRN----PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcC----CCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEEC
Confidence 347999999999999999855 8999999999999999999999999887777799999999999999999999998
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 539 G~ 540 (567)
T COG1132 539 GR 540 (567)
T ss_pred CE
Confidence 85
No 383
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.05 E-value=4.2e-10 Score=141.60 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=72.0
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
...||||||||++||+++.-. ||++||||||++||+.+...+.+.|.++.++.++|+|||++.+...||+++.+..
T Consensus 591 g~~LSgGq~qri~lARall~~----~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALVGN----PRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEK 666 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhC----CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeC
Confidence 347999999999999999855 9999999999999999999999999988778999999999999989999999987
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 667 G~ 668 (694)
T TIGR01846 667 GQ 668 (694)
T ss_pred CE
Confidence 63
No 384
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.05 E-value=3.9e-10 Score=141.85 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=68.9
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.-. ||++||||||++||+.+...+.+.|..+ +.++|+|||++.+...||+++.+..|
T Consensus 587 ~~LSGGQrQRialARAll~~----p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRK----PRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECC
Confidence 47999999999999999855 9999999999999999999999999877 46999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 661 ~ 661 (686)
T TIGR03797 661 R 661 (686)
T ss_pred E
Confidence 3
No 385
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.05 E-value=4.9e-10 Score=136.73 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=68.4
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHH-HHh-cCCCeEEEEEcchhHHHhcceeEEE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYV-KDR-TKDAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l-~~~-~~~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
...||||||||++||+++... ||++||||||++||+.+...+.+.+ ..+ ..+.++|+|||++.+...||+++.+
T Consensus 468 ~~~LSgGq~qRlalaRall~~----~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l 543 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWLED----RPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKL 543 (555)
T ss_pred cccCCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEE
Confidence 368999999999999999855 9999999999999999999998754 344 3578999999999899999999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 544 ~~G~ 547 (555)
T TIGR01194 544 AAGC 547 (555)
T ss_pred ECCE
Confidence 8763
No 386
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.05 E-value=2.8e-10 Score=118.65 Aligned_cols=72 Identities=18% Similarity=0.320 Sum_probs=63.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhccee
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRL 1236 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~ 1236 (1263)
.+..|||||+++++||.+++.. |+++||||||+|||+..+..+.++|.... .+..+|+|||+......||.+
T Consensus 120 ~~~~LS~G~~~rl~la~al~~~----p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 120 KCYSLSSGMQKIVAIARLIACQ----SDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred ChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 4678999999999999999965 89999999999999999999999997543 468999999998877778765
No 387
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.05 E-value=2.8e-10 Score=115.39 Aligned_cols=81 Identities=25% Similarity=0.322 Sum_probs=73.2
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcc-hhHHHhcce
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLR-NNMFELADR 1235 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~-~~~~~~ad~ 1235 (1263)
.+.+..|||||||||||+++|... |.+++||||-|.||......+.-+|..+.+ +.-++.|||. ++++.+||+
T Consensus 123 ~R~P~~LSGGEkQRVAIGRALLt~----P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~ 198 (352)
T COG4148 123 DRYPGTLSGGEKQRVAIGRALLTA----PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198 (352)
T ss_pred hhCCCccCcchhhHHHHHHHHhcC----CCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhhe
Confidence 467889999999999999999866 889999999999999999999999998886 5678999999 789999999
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
++.+..|.
T Consensus 199 vV~le~Gk 206 (352)
T COG4148 199 VVVLENGK 206 (352)
T ss_pred EEEecCCe
Confidence 99888763
No 388
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.05 E-value=4.7e-10 Score=136.94 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=69.0
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
..||||||||++||++++.. ||++||||||++||+.+...+.+.|.+.. .+.++|+|||++.+...||+++.+.
T Consensus 448 ~~LSgGq~qRl~lARal~~~----~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 523 (547)
T PRK10522 448 LKLSKGQKKRLALLLALAEE----RDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMR 523 (547)
T ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEE
Confidence 47999999999999999855 99999999999999999999998886543 3789999999999999999999998
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
.|.
T Consensus 524 ~G~ 526 (547)
T PRK10522 524 NGQ 526 (547)
T ss_pred CCE
Confidence 764
No 389
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.04 E-value=1.8e-10 Score=107.43 Aligned_cols=77 Identities=27% Similarity=0.420 Sum_probs=69.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHH-HhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
++..+||||+|||.||.-|+.. -|+++||||||.||..|+..+.++|.+-. .+.-+|=|=|+..+- ..|||++-
T Consensus 149 aPaTFSGGEqQRVNIaRgfivd----~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~ 224 (235)
T COG4778 149 APATFSGGEQQRVNIARGFIVD----YPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLD 224 (235)
T ss_pred CCcccCCchheehhhhhhhhcc----CceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheee
Confidence 5778999999999999999876 79999999999999999999999998764 488899999998876 57999998
Q ss_pred EEe
Q 000833 1239 IYK 1241 (1263)
Q Consensus 1239 v~~ 1241 (1263)
|+.
T Consensus 225 ~~~ 227 (235)
T COG4778 225 VSA 227 (235)
T ss_pred ccc
Confidence 875
No 390
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.04 E-value=5.1e-10 Score=138.38 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=74.0
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+.++|.++ +..+|+|||+... ..+||+++
T Consensus 435 ~~~~~~LSgGekqRl~la~al~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~ 508 (635)
T PRK11147 435 MTPVKALSGGERNRLLLARLFLKP----SNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECW 508 (635)
T ss_pred hChhhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEE
Confidence 346789999999999999999865 8999999999999999999999999877 3589999999654 47899999
Q ss_pred EEE-ecCCCceeEEecCCccccc
Q 000833 1238 GIY-KTDNCTKSITINPGSFTVC 1259 (1263)
Q Consensus 1238 ~v~-~~~~~s~~~~~~~~~~~~~ 1259 (1263)
.+. .|. ++.-++.|..|
T Consensus 509 ~l~~~g~-----i~~~~g~y~~y 526 (635)
T PRK11147 509 IFEGNGK-----IGRYVGGYHDA 526 (635)
T ss_pred EEeCCCe-----EEEccCCHHHH
Confidence 886 342 23335666555
No 391
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.04 E-value=4.9e-10 Score=136.58 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=68.8
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+++..||||||+|++||++++.. |+++||||||+|||+.++..+.++|.++. + .+|+|||+... ..+||+++
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~viivsHd~~~~~~~~d~i~ 511 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSG----GNVLLLDEPTNDLDVETLRALEEALLEFA-G-CAVVISHDRWFLDRIATHIL 511 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHCC-C-eEEEEeCCHHHHHHhCCEEE
Confidence 346789999999999999999866 99999999999999999999999999874 3 69999999755 46899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..+
T Consensus 512 ~l~~~ 516 (552)
T TIGR03719 512 AFEGD 516 (552)
T ss_pred EEECC
Confidence 98754
No 392
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.04 E-value=4.4e-10 Score=136.99 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=68.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..||||||+|++||.+|+.. |+++||||||++||+.++..+.++|.++. ..+|+|||+... ..+||+++.
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~----p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d~v~~ 230 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSK----PDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAGWILE 230 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEE
Confidence 46789999999999999999865 89999999999999999999999998764 489999999655 468999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 231 l~~g 234 (552)
T TIGR03719 231 LDRG 234 (552)
T ss_pred EECC
Confidence 9865
No 393
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.04 E-value=4.7e-10 Score=141.85 Aligned_cols=75 Identities=23% Similarity=0.393 Sum_probs=68.9
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||++|.-. ||++||||||++||+.+...+.+.|.. .+.++|+|||++.+...||+++.+..|
T Consensus 614 ~~LSGGQrQRiaLARall~~----p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRN----PSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 47999999999999999855 999999999999999999999999976 478999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 688 ~ 688 (710)
T TIGR03796 688 K 688 (710)
T ss_pred E
Confidence 3
No 394
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=4.4e-10 Score=138.35 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=69.5
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+++..||||||+|++||.+|+.. |+++||||||++||+..+..+.++|.++ +..||+|||+... ..+||+++
T Consensus 144 ~~~~~~LSgGerqRv~LA~aL~~~----P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~ 217 (638)
T PRK10636 144 ERPVSDFSGGWRMRLNLAQALICR----SDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKII 217 (638)
T ss_pred cCchhhcCHHHHHHHHHHHHHccC----CCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEE
Confidence 346789999999999999999866 9999999999999999999999999876 3689999999655 47899999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..|
T Consensus 218 ~L~~G 222 (638)
T PRK10636 218 HIEQQ 222 (638)
T ss_pred EEeCC
Confidence 99865
No 395
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.03 E-value=5.1e-10 Score=141.35 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=69.8
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++... ||++||||||++||+.+...+.+.|..+ ++.++|+|||++.+...||+++.+..|
T Consensus 610 ~~LSgGQrQRialARall~~----p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTD----SKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECC
Confidence 47999999999999999865 9999999999999999999999999875 568999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 685 ~ 685 (708)
T TIGR01193 685 K 685 (708)
T ss_pred E
Confidence 3
No 396
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.03 E-value=4.3e-10 Score=137.25 Aligned_cols=74 Identities=30% Similarity=0.414 Sum_probs=68.1
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
...||||||||++||+++... ||++||||||++||+.+...+.+.|..+.++..+|+|||++.+...||+++.+
T Consensus 456 g~~LSgGq~qri~laRal~~~----~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 456 GAGLSGGQAQRLALARAFLRD----APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cccCCHHHHHHHHHHHHHhcC----CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 347999999999999999855 99999999999999999999999999887889999999999999999999763
No 397
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.03 E-value=4.7e-10 Score=136.71 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=69.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..||||||+|++||.+|+.. |+++||||||++||+.++..+.++|+++. ..+|+|||+... ..+||+++.
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~----p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~ 232 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEK----PDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWILE 232 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCC----CCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEE
Confidence 46789999999999999999865 99999999999999999999999998874 489999999755 468999999
Q ss_pred EEecC
Q 000833 1239 IYKTD 1243 (1263)
Q Consensus 1239 v~~~~ 1243 (1263)
+..+.
T Consensus 233 l~~g~ 237 (556)
T PRK11819 233 LDRGR 237 (556)
T ss_pred EeCCE
Confidence 98753
No 398
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.03 E-value=5.3e-10 Score=138.19 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=69.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
+++..|||||++|++||.+|+.. |+++||||||++||+..+..+.++|+++. ..+|+|||+...+ .+||+++.
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~----P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~~ 225 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSN----PDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIVD 225 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEEE
Confidence 46789999999999999999866 99999999999999999999999998874 5899999996654 68999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 226 L~~G 229 (635)
T PRK11147 226 LDRG 229 (635)
T ss_pred EECC
Confidence 9865
No 399
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=5.5e-10 Score=135.78 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=68.4
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
+++..|||||++|++||.+|+.. |+++||||||++||+.++..+.++|.+ .+..+|+|||+... ..+||+++.
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSN----PDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 35789999999999999999865 899999999999999999999999974 35789999999654 578999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..+
T Consensus 225 l~~g 228 (530)
T PRK15064 225 LDYG 228 (530)
T ss_pred EeCC
Confidence 9875
No 400
>PLN03073 ABC transporter F family; Provisional
Probab=99.02 E-value=6.7e-10 Score=136.81 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=67.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~~ 1238 (1263)
+++..||||||+|++||.+|+.. |+++||||||+|||+.++..+...|.... ..+|+|||+...+ .+||+++.
T Consensus 623 ~~~~~LSgGqkqRvaLAraL~~~----p~lLLLDEPT~~LD~~s~~~l~~~L~~~~--gtvIivSHd~~~i~~~~drv~~ 696 (718)
T PLN03073 623 QPMYTLSGGQKSRVAFAKITFKK----PHILLLDEPSNHLDLDAVEALIQGLVLFQ--GGVLMVSHDEHLISGSVDELWV 696 (718)
T ss_pred CCccccCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHcC--CEEEEEECCHHHHHHhCCEEEE
Confidence 46789999999999999999865 99999999999999999999999887652 4899999996554 68999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 697 l~~G 700 (718)
T PLN03073 697 VSEG 700 (718)
T ss_pred EECC
Confidence 9865
No 401
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=7.1e-10 Score=138.08 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=70.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCC-CCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKP-TPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~-~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+++..|||||+||++||..|+.. | +.+||||||++|||+..+..+.++|+++.+ +.++|+|||++.++..||+++
T Consensus 483 r~~~tLSGGE~QRv~LA~aL~~~---~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi 559 (924)
T TIGR00630 483 RAAGTLSGGEAQRIRLATQIGSG---LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVI 559 (924)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhC---CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEE
Confidence 46789999999999999999854 2 369999999999999999999999998864 789999999988888999999
Q ss_pred EEE
Q 000833 1238 GIY 1240 (1263)
Q Consensus 1238 ~v~ 1240 (1263)
.+-
T Consensus 560 ~Lg 562 (924)
T TIGR00630 560 DIG 562 (924)
T ss_pred Eec
Confidence 994
No 402
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.01 E-value=8.3e-10 Score=111.24 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=72.6
Q ss_pred CccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC---CCeEEEEEcc-hhHHH
Q 000833 1156 KKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK---DAQFIIISLR-NNMFE 1231 (1263)
Q Consensus 1156 ~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~---~~q~i~ith~-~~~~~ 1231 (1263)
....+++..||-||++|+.||+++... |.++|||||++|||..++..+.+.|.++.. ..++|+|||+ .++..
T Consensus 163 ~la~r~~~~LS~Ge~rrvLiaRALv~~----P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~ 238 (257)
T COG1119 163 HLADRPFGSLSQGEQRRVLIARALVKD----PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP 238 (257)
T ss_pred hhccCchhhcCHhHHHHHHHHHHHhcC----CCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc
Confidence 345678999999999999999999877 899999999999999999999999988752 6799999999 56667
Q ss_pred hcceeEEEEecC
Q 000833 1232 LADRLVGIYKTD 1243 (1263)
Q Consensus 1232 ~ad~~~~v~~~~ 1243 (1263)
..++++.+..+.
T Consensus 239 ~~th~lll~~g~ 250 (257)
T COG1119 239 CFTHRLLLKEGE 250 (257)
T ss_pred ccceEEEeeCCc
Confidence 778887777654
No 403
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.00 E-value=8.9e-10 Score=146.14 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=74.0
Q ss_pred ccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-Hhcce
Q 000833 1157 KSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADR 1235 (1263)
Q Consensus 1157 ~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~ 1235 (1263)
...+.+..||||||+|++||++|+.. |+++||||||+|||+..+..+.++|+++..+..+|++||+...+ .+||+
T Consensus 1054 ~~~~~~~~LSGGqKQRLsLArALi~~----PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDr 1129 (2272)
T TIGR01257 1054 KRNEEAQDLSGGMQRKLSVAIAFVGD----AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDR 1129 (2272)
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence 34457889999999999999999976 99999999999999999999999999987788999999996555 68999
Q ss_pred eEEEEecC
Q 000833 1236 LVGIYKTD 1243 (1263)
Q Consensus 1236 ~~~v~~~~ 1243 (1263)
++.+..|.
T Consensus 1130 I~iL~~Gk 1137 (2272)
T TIGR01257 1130 IAIISQGR 1137 (2272)
T ss_pred EEEEECCE
Confidence 99998763
No 404
>PLN03211 ABC transporter G-25; Provisional
Probab=98.99 E-value=8.2e-10 Score=135.39 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=71.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchh--HHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNN--MFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~--~~~~ad~~~ 1237 (1263)
.+..||||||+|++||..|+.. ||++||||||+|||..++..+.++|+++. .+.++|++||++. +..++|+++
T Consensus 203 ~~~~LSgGerqRv~ia~aL~~~----P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ii 278 (659)
T PLN03211 203 FIRGISGGERKRVSIAHEMLIN----PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVL 278 (659)
T ss_pred CCCCcChhhhhHHHHHHHHHhC----CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEE
Confidence 3568999999999999999976 89999999999999999999999999876 4789999999974 678999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 279 lL~~G~ 284 (659)
T PLN03211 279 VLSEGR 284 (659)
T ss_pred EecCCc
Confidence 998764
No 405
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.99 E-value=8.7e-10 Score=138.39 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=66.5
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.-. ||++||||||++||+.+...+.+ . ...++.++|+|||++.+...||+++.+..|
T Consensus 616 ~~LSGGQkQRlalARALl~~----p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRK----PRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcC----CCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECC
Confidence 47999999999999999854 99999999999999999998888 3 234678999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 690 ~ 690 (711)
T TIGR00958 690 S 690 (711)
T ss_pred E
Confidence 3
No 406
>PLN03073 ABC transporter F family; Provisional
Probab=98.98 E-value=1.1e-09 Score=134.78 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=69.8
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+++..||||||+|++||.+|+.. |+++||||||++||+..+..+.++|+.+ +..+|+|||+... ..+||+++
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~----p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~ 412 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIE----PDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDIL 412 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence 456789999999999999999976 8999999999999999999999999887 4689999999655 46799999
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..+
T Consensus 413 ~l~~g 417 (718)
T PLN03073 413 HLHGQ 417 (718)
T ss_pred EEECC
Confidence 99865
No 407
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.98 E-value=3.9e-10 Score=108.24 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=76.1
Q ss_pred CCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-
Q 000833 1154 PPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF- 1230 (1263)
Q Consensus 1154 ~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~- 1230 (1263)
..+-..+.+.+||||||||+-+|+.+|-. +++++||||-.+||..+...++..|+.+.. +..+++|-|+-+++
T Consensus 125 L~~l~dryLd~LSGGQrQRAfIAMVlaQd----TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS 200 (252)
T COG4604 125 LEDLSDRYLDELSGGQRQRAFIAMVLAQD----TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFAS 200 (252)
T ss_pred ccchHHHhHHhcccchhhhhhhheeeecc----CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHH
Confidence 34556778999999999999999999855 899999999999999999999999998875 78999999997776
Q ss_pred HhcceeEEEEecC
Q 000833 1231 ELADRLVGIYKTD 1243 (1263)
Q Consensus 1231 ~~ad~~~~v~~~~ 1243 (1263)
.+||+++.+..|.
T Consensus 201 ~YsD~IVAlK~G~ 213 (252)
T COG4604 201 CYSDHIVALKNGK 213 (252)
T ss_pred hhhhheeeecCCE
Confidence 5799999998874
No 408
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.98 E-value=1.3e-09 Score=134.82 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=67.2
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
...||||||||++||++++.. ||++||||||++||+.+...+.+.+++. +.++|+|||++.+..+||+++.+.
T Consensus 580 ~~~LSgGqkQRl~iARal~~~----p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHK----PQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence 458999999999999999866 9999999999999999999999998764 689999999998999999999885
No 409
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.97 E-value=1.3e-09 Score=132.96 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=68.0
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh-HHHhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN-MFELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~-~~~~ad~~~ 1237 (1263)
.+++..|||||++|++||++++.. |+++||||||+|||+.++..+.++|..+. + .+|+|||+.. +..+||+++
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~ 513 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQG----GNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLDRIATHIL 513 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHHHhCCEEE
Confidence 346789999999999999999865 99999999999999999999999998874 3 7999999965 457899999
Q ss_pred EEEe
Q 000833 1238 GIYK 1241 (1263)
Q Consensus 1238 ~v~~ 1241 (1263)
.+..
T Consensus 514 ~l~~ 517 (556)
T PRK11819 514 AFEG 517 (556)
T ss_pred EEEC
Confidence 8875
No 410
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.97 E-value=1.3e-09 Score=127.79 Aligned_cols=90 Identities=20% Similarity=0.358 Sum_probs=75.7
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
.++++.||||||.|++||.+|... |++++|||||.+||...+..+-++|+... + .+|||||+-.+. ..|++++
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~----pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEE----PDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheE
Confidence 457899999999999999998754 89999999999999999999999998665 3 999999996655 7899999
Q ss_pred EEEecCCCceeEEecCCccccc
Q 000833 1238 GIYKTDNCTKSITINPGSFTVC 1259 (1263)
Q Consensus 1238 ~v~~~~~~s~~~~~~~~~~~~~ 1259 (1263)
.+..+ .+..=+++|..|
T Consensus 222 ~ld~g-----~l~~y~Gny~~~ 238 (530)
T COG0488 222 ELDRG-----KLTPYKGNYSSY 238 (530)
T ss_pred EecCC-----ceeEecCCHHHH
Confidence 99987 334445666554
No 411
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.96 E-value=1.4e-09 Score=144.57 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=70.7
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHHHhcceeEEE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
...||||||||+|||++|.-. ||++||||||++||+.+...|.+.|.... ++.++|+|||+..++..||+++.+
T Consensus 1356 G~~LSGGQkQRIaIARALlr~----p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl 1431 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALLRE----PKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVF 1431 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcC----CCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEE
Confidence 357999999999999999855 99999999999999999999999998874 588999999999999999999999
Q ss_pred Eec
Q 000833 1240 YKT 1242 (1263)
Q Consensus 1240 ~~~ 1242 (1263)
..+
T Consensus 1432 ~~~ 1434 (1466)
T PTZ00265 1432 NNP 1434 (1466)
T ss_pred eCC
Confidence 874
No 412
>PF13166 AAA_13: AAA domain
Probab=98.95 E-value=5.6e-05 Score=96.36 Aligned_cols=70 Identities=26% Similarity=0.251 Sum_probs=60.4
Q ss_pred ccccCChhHHHHHHHHHHHHhcc--C---CCCCeEEeecCcCCCCHHHHHHHHHHHHHh---cCCCeEEEEEcchhHH
Q 000833 1161 NIANLSGGEKTLSSLALVFALHH--Y---KPTPLYVMDEIDAALDFKNVSIVGHYVKDR---TKDAQFIIISLRNNMF 1230 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~--~---~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~---~~~~q~i~ith~~~~~ 1230 (1263)
+...||-|||+.+|+|..||... . ...+++|||.|-+.||..++..++.+|.++ ....||||.||+..++
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~ 574 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFF 574 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHH
Confidence 45789999999999999999655 1 245799999999999999999999999998 5789999999995444
No 413
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.95 E-value=1.7e-09 Score=143.83 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=71.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHHHhcceeEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
....||||||||++||++++.. ||++||||||++||+.+...+.+.|.++. .+..+|+|||+..+...||+++.
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~----P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iiv 651 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRN----PKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFV 651 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEE
Confidence 3558999999999999999866 99999999999999999999999999875 37899999999888899999999
Q ss_pred EEec
Q 000833 1239 IYKT 1242 (1263)
Q Consensus 1239 v~~~ 1242 (1263)
+..|
T Consensus 652 l~~g 655 (1466)
T PTZ00265 652 LSNR 655 (1466)
T ss_pred EeCC
Confidence 9886
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.95 E-value=1.7e-09 Score=135.07 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=69.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCC-CCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKP-TPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~-~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
+++..|||||+||++||..|+.. | +.+|||||||+|||+..+..+.++|+++.+ +.++|+|||++..+..||+++
T Consensus 485 r~~~~LSgGE~QRv~LA~aL~~~---~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi 561 (943)
T PRK00349 485 RSAGTLSGGEAQRIRLATQIGSG---LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIV 561 (943)
T ss_pred CchhhCCHHHHHHHHHHHHHhhC---CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 57889999999999999999865 2 369999999999999999999999998865 789999999988888899999
Q ss_pred EEE
Q 000833 1238 GIY 1240 (1263)
Q Consensus 1238 ~v~ 1240 (1263)
.+-
T Consensus 562 ~Lg 564 (943)
T PRK00349 562 DIG 564 (943)
T ss_pred Eec
Confidence 883
No 415
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.95 E-value=1.7e-09 Score=119.20 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=68.4
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
..||||||||++||+.| |..|-|+|||||.++||..--..+...|.... ++..+|+|||+|.+...+|++..+..
T Consensus 471 ~~LSgGQRQRIaLARAl----YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~ 546 (580)
T COG4618 471 ATLSGGQRQRIALARAL----YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD 546 (580)
T ss_pred CCCCchHHHHHHHHHHH----cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecC
Confidence 47999999999999988 34466777999999999999999999988765 58899999999999999999999988
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 547 G~ 548 (580)
T COG4618 547 GR 548 (580)
T ss_pred Ch
Confidence 74
No 416
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.94 E-value=1.5e-09 Score=127.12 Aligned_cols=77 Identities=25% Similarity=0.331 Sum_probs=68.7
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
.+++..||||||.|++||.++.. ||.|+||||||.+||...+..+.+.|.... ..+|+|||+..+. ..|++++
T Consensus 434 ~~~v~~LSGGEk~Rl~La~ll~~----~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~ 507 (530)
T COG0488 434 EKPVGVLSGGEKARLLLAKLLLQ----PPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIW 507 (530)
T ss_pred hCchhhcCHhHHHHHHHHHHhcc----CCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEE
Confidence 35788999999999999988864 589999999999999999999999998775 6999999998776 6899999
Q ss_pred EEEe
Q 000833 1238 GIYK 1241 (1263)
Q Consensus 1238 ~v~~ 1241 (1263)
.+..
T Consensus 508 ~~~~ 511 (530)
T COG0488 508 LVED 511 (530)
T ss_pred EEcC
Confidence 9986
No 417
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.92 E-value=2.1e-09 Score=142.76 Aligned_cols=80 Identities=20% Similarity=0.197 Sum_probs=71.5
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcch-hHHHhccee
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRN-NMFELADRL 1236 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~-~~~~~ad~~ 1236 (1263)
.+.+..||||||++++||++++.. |+++||||||+|||+..++.+.++|.++. .+..+|++||+. .+..+||++
T Consensus 2065 dk~~~~LSGGqKqRLslA~ALi~~----P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV 2140 (2272)
T TIGR01257 2065 DRLAGTYSGGNKRKLSTAIALIGC----PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140 (2272)
T ss_pred cCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 356789999999999999999976 99999999999999999999999998874 468999999995 556789999
Q ss_pred EEEEec
Q 000833 1237 VGIYKT 1242 (1263)
Q Consensus 1237 ~~v~~~ 1242 (1263)
+.+..|
T Consensus 2141 ~IL~~G 2146 (2272)
T TIGR01257 2141 AIMVKG 2146 (2272)
T ss_pred EEEECC
Confidence 999876
No 418
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.91 E-value=2.6e-09 Score=132.08 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=72.0
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
.+..|||||+++++||..|+.. |+++||||||+|||+.++..+.++|+++. .+.++|+|||++.....||+++.+
T Consensus 141 ~~~~LS~Gq~qrv~LAraL~~~----P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l 216 (648)
T PRK10535 141 QPSQLSGGQQQRVSIARALMNG----GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEI 216 (648)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEE
Confidence 4568999999999999999966 89999999999999999999999999875 478999999998888899999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..+.
T Consensus 217 ~~G~ 220 (648)
T PRK10535 217 RDGE 220 (648)
T ss_pred ECCE
Confidence 8863
No 419
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.90 E-value=3.3e-09 Score=138.28 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCC--CeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhccee
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPT--PLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRL 1236 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~--p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~ 1236 (1263)
+++..|||||+||++||..++.. + ++|||||||+|||+..+..+.++|+++.+ +.++|+|||+..++.+||++
T Consensus 472 R~~~tLSGGE~QRV~LAraL~~~----p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrV 547 (1809)
T PRK00635 472 RALATLSGGEQERTALAKHLGAE----LIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRI 547 (1809)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEE
Confidence 46779999999999999999744 4 69999999999999999999999998864 78999999998889999999
Q ss_pred EEEEec
Q 000833 1237 VGIYKT 1242 (1263)
Q Consensus 1237 ~~v~~~ 1242 (1263)
+.+..+
T Consensus 548 i~L~pG 553 (1809)
T PRK00635 548 IDIGPG 553 (1809)
T ss_pred EEEcCC
Confidence 999644
No 420
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=3.2e-09 Score=117.19 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=67.5
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
.+++..||||||+++++|-+.-. .|.++||||||.+||......++..|+.+. .-||+|||+..+. ..|+.+|
T Consensus 477 ~~si~~LSGGQKsrvafA~~~~~----~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~W 550 (582)
T KOG0062|consen 477 LQSIASLSGGQKSRVAFAACTWN----NPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELW 550 (582)
T ss_pred hccccccCCcchhHHHHHHHhcC----CCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeE
Confidence 44688999999999999965543 378999999999999999999999998774 5799999997766 6799999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.|..|.
T Consensus 551 vve~g~ 556 (582)
T KOG0062|consen 551 VVEDGK 556 (582)
T ss_pred EEcCCc
Confidence 998763
No 421
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=3.6e-09 Score=130.48 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=73.0
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
..+||||||||+|||+++.- +|++++|||.|++||...-+.+-+.|.....+.+.|+|+|+..++..||.++.|..
T Consensus 1124 G~QLSGGQKQRIAIARAilR----nPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~ 1199 (1228)
T KOG0055|consen 1124 GVQLSGGQKQRIAIARAILR----NPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKN 1199 (1228)
T ss_pred cCcCCchHHHHHHHHHHHHc----CCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEEC
Confidence 45899999999999999974 49999999999999999999999999988889999999999999999999999998
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 1200 G~ 1201 (1228)
T KOG0055|consen 1200 GK 1201 (1228)
T ss_pred CE
Confidence 74
No 422
>PRK03918 chromosome segregation protein; Provisional
Probab=98.86 E-value=0.0018 Score=84.95 Aligned_cols=137 Identities=20% Similarity=0.222 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccEEEEecCCCCcccccceeeecCCCccccccccCChhHHHHHHHHHHHHhcc--CCCC
Q 000833 1110 MAGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH--YKPT 1187 (1263)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~--~~~~ 1187 (1263)
..++..|+..+..+|..++.++...+.+.... ..+.+.+.. +....++..||||++++++||+.+|+.. +.+|
T Consensus 739 ~~~~~~l~~~~~~if~~l~~~~~~~~~l~~~~----~~~~i~~l~-~g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~ 813 (880)
T PRK03918 739 ERALSKVGEIASEIFEELTEGKYSGVRVKAEE----NKVKLFVVY-QGKERPLTFLSGGERIALGLAFRLALSLYLAGNI 813 (880)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEEEecCC----CceEEEEeC-CCCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCC
Confidence 34456677778889998875433333432211 123333333 3345688899999999999998766543 4788
Q ss_pred CeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEEEEecCCCceeEEe
Q 000833 1188 PLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVGIYKTDNCTKSITI 1251 (1263)
Q Consensus 1188 p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~v~~~~~~s~~~~~ 1251 (1263)
|++||||||+|||+.++..+.++|..+.+ +.|+|+|||++.+..+||+++.|.+.+++|.+..+
T Consensus 814 ~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~~~~~s~~~~~ 878 (880)
T PRK03918 814 PLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSLEGGVSKVEVV 878 (880)
T ss_pred CeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEecCCeeEEEec
Confidence 99999999999999999999999988654 67999999999899999999999998888877655
No 423
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.86 E-value=3.4e-09 Score=129.45 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=56.7
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcch
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRN 1227 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~ 1227 (1263)
..||||||||++||++|.-. ||++||||||++||+.+...+.+.|..+.++.++|+|||++
T Consensus 469 ~~LSGGQrQRiaiARall~~----~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLAD----APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 46999999999999999854 99999999999999999999999999888889999999984
No 424
>PLN03232 ABC transporter C family member; Provisional
Probab=98.86 E-value=5.3e-09 Score=140.75 Aligned_cols=77 Identities=23% Similarity=0.381 Sum_probs=71.7
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.-. ||++|||||||+||+.+...|.+.|++..++.++|+|||+..+...||+++.+.+|
T Consensus 1370 ~~LSgGQrQrlaLARALLr~----~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G 1445 (1495)
T PLN03232 1370 ENFSVGQRQLLSLARALLRR----SKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSG 1445 (1495)
T ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 47999999999999999855 99999999999999999999999999888889999999999999999999999887
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 1446 ~ 1446 (1495)
T PLN03232 1446 Q 1446 (1495)
T ss_pred E
Confidence 4
No 425
>PRK00064 recF recombination protein F; Reviewed
Probab=98.85 E-value=1.5e-07 Score=107.32 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecCCCC------------------------------cccc
Q 000833 1098 YDEWRKKRLDEFMAGFNAISLKLKEMYQMITLGG-DAELELVDSLD------------------------------PFSE 1146 (1263)
Q Consensus 1098 ~~~l~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~------------------------------~~~~ 1146 (1263)
+..+...+...+...+..+...+..+|..++.+. ...+......+ |+-.
T Consensus 180 l~~~g~~I~~~R~~~~~~L~~~~~~~~~~l~~~~~~~~l~y~~~~~~~~~~~~~~~~~~l~~~~~~d~~~g~T~~GpHrd 259 (361)
T PRK00064 180 LAELGAAIAAARLEYLERLAPLAAKTHQEISPEFELASLSYQSSVEDDAEKIEEDLLEALAKNRERDRARGRTLVGPHRD 259 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCcchhHHHHHHHHHHHHhHHHHHhcCCCCCCcchh
Confidence 3344444455566667778888888888875332 33333322210 0111
Q ss_pred cceeeecCCCccccccccCChhHHHHHHHHHHHHhcc-----CCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEE
Q 000833 1147 GVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH-----YKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFI 1221 (1263)
Q Consensus 1147 ~~~~~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~-----~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i 1221 (1263)
-+.|.+. + ......+|+||+.+++||+.+|... ..++|+++||||+++||+..+..+.++|..+ +.|+|
T Consensus 260 Dl~~~~~--g--~~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~ 333 (361)
T PRK00064 260 DLRFRIN--G--LPAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVF 333 (361)
T ss_pred ceEEEEC--C--CCHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEE
Confidence 1233321 2 2245678999999999999998422 4678999999999999999999999998754 46999
Q ss_pred EEEcchhH-HHh--cceeEEEEec
Q 000833 1222 IISLRNNM-FEL--ADRLVGIYKT 1242 (1263)
Q Consensus 1222 ~ith~~~~-~~~--ad~~~~v~~~ 1242 (1263)
++||++.. ... +++++.|..|
T Consensus 334 it~~~~~~~~~~~~~~~i~~v~~G 357 (361)
T PRK00064 334 ITTTDLEDLADLLENAKIFHVEQG 357 (361)
T ss_pred EEcCChhhhhhhhccCcEEEEeCC
Confidence 99998533 333 3467777665
No 426
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.84 E-value=6.6e-09 Score=129.87 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=69.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
+++..|||||++|++||..|+.. ..+++++|||||++|||+..+..+.++|.++.+ +..+|+|||++.++..||+++.
T Consensus 826 ~~~~tLSgGEkQRl~LAraL~~~-p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~ 904 (943)
T PRK00349 826 QPATTLSGGEAQRVKLAKELSKR-STGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIID 904 (943)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC-CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 35678999999999999999854 011289999999999999999999999998764 6899999999988889999998
Q ss_pred EEe
Q 000833 1239 IYK 1241 (1263)
Q Consensus 1239 v~~ 1241 (1263)
+..
T Consensus 905 Lgp 907 (943)
T PRK00349 905 LGP 907 (943)
T ss_pred ecC
Confidence 853
No 427
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.83 E-value=3.2e-09 Score=106.53 Aligned_cols=53 Identities=34% Similarity=0.518 Sum_probs=43.3
Q ss_pred EEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcch-hhhh
Q 000833 24 EMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRA-KQMR 76 (1263)
Q Consensus 24 ~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~-~~~r 76 (1263)
+|.+.||+||...+.+..+++++++|||||||||||++++|.|++|... +..|
T Consensus 1 ~i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~ 54 (162)
T cd03227 1 KIVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR 54 (162)
T ss_pred CceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc
Confidence 3678999999887777445556999999999999999999999988643 3345
No 428
>PLN03130 ABC transporter C family member; Provisional
Probab=98.83 E-value=7.4e-09 Score=139.30 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=71.8
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.-. ||++||||||++||..+...|.+.|++..+++++|+|+|+..+...||+++.+..|
T Consensus 1373 ~nLSgGQrQrlaLARALLr~----p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1373 ENFSVGQRQLLSLARALLRR----SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred CCCCHHHHHHHHHHHHHHcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 47999999999999999854 89999999999999999999999999888899999999999999999999999987
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 1449 ~ 1449 (1622)
T PLN03130 1449 R 1449 (1622)
T ss_pred E
Confidence 4
No 429
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.82 E-value=7.8e-09 Score=139.39 Aligned_cols=77 Identities=26% Similarity=0.366 Sum_probs=71.6
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.-. ||++||||||++||..+...|.+.|++..+++++|+|+|+..++..||+++.+..|
T Consensus 1420 ~~LSgGQrQrl~LARALLr~----~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G 1495 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLARALLRK----TKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKG 1495 (1522)
T ss_pred CcCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 46999999999999999844 99999999999999999999999999888889999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 1496 ~ 1496 (1522)
T TIGR00957 1496 E 1496 (1522)
T ss_pred E
Confidence 4
No 430
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.82 E-value=6.3e-09 Score=128.08 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=69.3
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch--hHHHhcceeEEE
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN--NMFELADRLVGI 1239 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~--~~~~~ad~~~~v 1239 (1263)
..||||||+|++||..++.. |++++|||||+|||+..+..+.+.|+++.. +..+|++||+| .+...+|+++.+
T Consensus 165 ~~LSgGqrkRvsia~aL~~~----p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 165 KGLSGGERKRLAFASELLTD----PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred CCcCcchhhHHHHHHHHHcC----CCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe
Confidence 47999999999999999865 899999999999999999999999998864 78999999997 478999999999
Q ss_pred Eec
Q 000833 1240 YKT 1242 (1263)
Q Consensus 1240 ~~~ 1242 (1263)
..|
T Consensus 241 ~~G 243 (617)
T TIGR00955 241 AEG 243 (617)
T ss_pred eCC
Confidence 876
No 431
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.1e-09 Score=112.20 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=71.0
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecC
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
.||||||||+|||+.+-- .||+++|||.|++||...-..+-.-|...+.+++.++|.|+..+..-||.++.+..|.
T Consensus 399 klSggekqrvaiar~ilk----~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 399 KLSGGEKQRVAIARTILK----NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred eccCchHHHHHHHHHHhc----CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 689999999999998864 4999999999999999999999999999999999999999999999999999998874
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=1e-08 Score=127.97 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=70.8
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhHHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
+++..|||||++|++||..|+... .+|+++|||||++|||+..+..+.++|.++. .+..+|+|||++.++..||+++.
T Consensus 824 ~~~~tLSgGe~QRl~LA~aL~~~~-~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~ 902 (924)
T TIGR00630 824 QPATTLSGGEAQRIKLAKELSKRS-TGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIID 902 (924)
T ss_pred CccccCCHHHHHHHHHHHHHhhcC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 457799999999999999998521 2478999999999999999999999999876 47899999999888889999998
Q ss_pred EEe
Q 000833 1239 IYK 1241 (1263)
Q Consensus 1239 v~~ 1241 (1263)
+..
T Consensus 903 Lgp 905 (924)
T TIGR00630 903 LGP 905 (924)
T ss_pred ecC
Confidence 854
No 433
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.81 E-value=8.9e-09 Score=138.34 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=71.3
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||+++.- ++|++||||||++||+.+...|.+.|++..+++++|+|||+..+...||+++.+..|
T Consensus 1352 ~nLSgGQrQrL~LARALLr----~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILS----KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 3689999999999999974 499999999999999999999999999888889999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 1428 ~ 1428 (1490)
T TIGR01271 1428 S 1428 (1490)
T ss_pred E
Confidence 4
No 434
>PLN03140 ABC transporter G family member; Provisional
Probab=98.81 E-value=8.2e-09 Score=136.58 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=69.2
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchh--HHHhcceeEE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNN--MFELADRLVG 1238 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~--~~~~ad~~~~ 1238 (1263)
+..||||||+|++||..|+.. |++++|||||+|||+.++..+.+.|+++.+ +..+|++||++. ++..+|+++.
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~----P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVAN----PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEE
Confidence 357999999999999999976 999999999999999999999999998864 679999999985 5789999999
Q ss_pred EEe
Q 000833 1239 IYK 1241 (1263)
Q Consensus 1239 v~~ 1241 (1263)
+.+
T Consensus 1093 L~~ 1095 (1470)
T PLN03140 1093 MKR 1095 (1470)
T ss_pred EcC
Confidence 986
No 435
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.80 E-value=1.4e-08 Score=110.27 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=70.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHH-hcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFE-LADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~-~ad~~~ 1237 (1263)
+.++.|||||.||+|||..++-. ++||+||||+++||...+-.++..|++++. +.-+|+|-|+..+.. +||.+-
T Consensus 209 r~v~~LSGGELQr~aIaa~l~rd----ADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vh 284 (591)
T COG1245 209 RDVSELSGGELQRVAIAAALLRD----ADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVH 284 (591)
T ss_pred hhhhhcCchHHHHHHHHHHHhcc----CCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeE
Confidence 57889999999999999888744 999999999999999999999999999987 689999999987775 588877
Q ss_pred EEEecCC
Q 000833 1238 GIYKTDN 1244 (1263)
Q Consensus 1238 ~v~~~~~ 1244 (1263)
.++-.++
T Consensus 285 I~YG~pg 291 (591)
T COG1245 285 ILYGEPG 291 (591)
T ss_pred EEecCCc
Confidence 7775544
No 436
>PTZ00243 ABC transporter; Provisional
Probab=98.80 E-value=1.1e-08 Score=137.50 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=71.4
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
..||||||||++||++|.- +++|++|||||||+||+.+-..|.+.|.+..++.++|+|+|+..+...||+++.+..|
T Consensus 1444 ~nLSgGQrQrLaLARALL~---~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1444 SNYSVGQRQLMCMARALLK---KGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHG 1520 (1560)
T ss_pred CcCCHHHHHHHHHHHHHhc---CCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 4799999999999999873 2489999999999999999999999999887889999999999999999999999876
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 1521 ~ 1521 (1560)
T PTZ00243 1521 A 1521 (1560)
T ss_pred E
Confidence 3
No 437
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.79 E-value=1.2e-08 Score=99.86 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=64.9
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcc-hhHHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLR-NNMFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~-~~~~~~ad~~~ 1237 (1263)
++..|||||||.++|+++. ..||.+++|||-||+|||.....++++=.+.. .+.+.++|||+ .+...+.+|++
T Consensus 145 ~iglLSGGQRQalsL~MAt----l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI 220 (263)
T COG1101 145 RIGLLSGGQRQALSLLMAT----LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI 220 (263)
T ss_pred hhhhccchHHHHHHHHHHh----cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE
Confidence 5778999999966555433 35688999999999999999999998766653 36788999999 45668999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.++.|.
T Consensus 221 mLh~G~ 226 (263)
T COG1101 221 MLHSGK 226 (263)
T ss_pred EEeCCe
Confidence 999875
No 438
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.77 E-value=2.6e-09 Score=111.41 Aligned_cols=48 Identities=31% Similarity=0.627 Sum_probs=43.1
Q ss_pred eEEEEEEecCccccCCCcccccCCCc-ceEEEcCCCCChhHHHHHHHHHcC
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKS-FSAVVGPNGSGKSNVIDAMLFVFG 69 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~-~~~i~G~nGsGKS~i~~ai~~~lg 69 (1263)
|.|.+|.|.||+||.+..+ .|+++ .|.||||||||||||||||.-+|.
T Consensus 1 mrLrkiSl~nfr~f~~ldi--tf~e~~ttIivgpNGsGKTtvLdair~aL~ 49 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDI--TFGESETTIIVGPNGSGKTTVLDAIRNALN 49 (440)
T ss_pred Cccchhhhhhhhhhhhcee--ecCCCceEEEECCCCCChhhHHHHHHHHHH
Confidence 6789999999999999877 67767 999999999999999999987664
No 439
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.77 E-value=2.2e-08 Score=93.88 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=69.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHHH-hcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMFE-LADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~~-~ad~~~ 1237 (1263)
.+..+|||.+||..||.-+... |.+.++||||.|||.....++.++++.+.. +.-++||||+..++. .|||+.
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~----PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlm 223 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTR----PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM 223 (258)
T ss_pred cccccchHHHHHHHHHHHhccC----CceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcce
Confidence 4678999999999999999866 778899999999999999999999988765 568899999988875 699999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..+.
T Consensus 224 vmk~g~ 229 (258)
T COG4107 224 VMKQGQ 229 (258)
T ss_pred eecCCC
Confidence 888764
No 440
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.77 E-value=0.0043 Score=83.19 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=62.1
Q ss_pred EEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCc-chh-------hhhhhcccccccccc--cC
Q 000833 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGK-RAK-------QMRLNKVSELIHNST--NY 90 (1263)
Q Consensus 21 ~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~-~~~-------~~r~~~~~~~i~~g~--~~ 90 (1263)
.+.++-|.||=-|.+.++ +|.+|+++|+|||||||||+||||.|++|. +.+ ..|..+|.++++.|. ..
T Consensus 3 ~~~R~gliN~~~~~~~~~--~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~ 80 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQEF--WFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHD 80 (1353)
T ss_pred eeeeEEEEEeccccceEE--ecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCC
Confidence 467899999999998776 999999999999999999999999887653 322 246777888888775 22
Q ss_pred CCCCceEEEEEE
Q 000833 91 QNLDSAGVSVHF 102 (1263)
Q Consensus 91 ~~~~~a~v~~~~ 102 (1263)
...++++|++++
T Consensus 81 ~~~~y~~~e~~~ 92 (1353)
T TIGR02680 81 ERVGYLWLEFGR 92 (1353)
T ss_pred CcceeEEEEeec
Confidence 234666666666
No 441
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.76 E-value=1.3e-08 Score=135.59 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=71.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcch--hHHHhccee
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRN--NMFELADRL 1236 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~--~~~~~ad~~ 1236 (1263)
.+..||||||+|++||..++.. |++++|||||+|||+.++..+.+.|+++++ +..+|++||++ .+..++|++
T Consensus 206 ~~~~LSGGerkRvsIA~aL~~~----p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v 281 (1394)
T TIGR00956 206 FVRGVSGGERKRVSIAEASLGG----AKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKV 281 (1394)
T ss_pred cCCCCCcccchHHHHHHHHHhC----CCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceE
Confidence 4568999999999999999976 999999999999999999999999999864 67899999995 678899999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 282 ~~L~~G~ 288 (1394)
T TIGR00956 282 IVLYEGY 288 (1394)
T ss_pred EEEeCCe
Confidence 9998864
No 442
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.76 E-value=1.7e-08 Score=131.77 Aligned_cols=80 Identities=24% Similarity=0.326 Sum_probs=70.3
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
+++..|||||++|++||..|+.. ..+|+++||||||+|||+..+..+.++|.++.. +.++|+|||+...+.+||+++.
T Consensus 805 q~~~tLSGGE~QRV~LAraL~~~-~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~ 883 (1809)
T PRK00635 805 RPLSSLSGGEIQRLKLAYELLAP-SKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLE 883 (1809)
T ss_pred CccccCCHHHHHHHHHHHHHhhc-CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 35678999999999999999731 245899999999999999999999999998764 6789999999877799999999
Q ss_pred EE
Q 000833 1239 IY 1240 (1263)
Q Consensus 1239 v~ 1240 (1263)
+.
T Consensus 884 L~ 885 (1809)
T PRK00635 884 LG 885 (1809)
T ss_pred Ec
Confidence 95
No 443
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.76 E-value=1.8e-08 Score=135.45 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=69.3
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHH-HHHhcCCCeEEEEEcchhHHHhcceeEEEE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHY-VKDRTKDAQFIIISLRNNMFELADRLVGIY 1240 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~-l~~~~~~~q~i~ith~~~~~~~ad~~~~v~ 1240 (1263)
...||||||+|++||++++.. |+++|||||++|||+.....+.+. +..+.++..+|+|||++.....||+++.+.
T Consensus 546 g~~LSgGqkqRi~lARAl~~~----~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~ 621 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYKD----ADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH 621 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEE
Confidence 458999999999999999865 899999999999999999999984 566667889999999998888899999998
Q ss_pred ec
Q 000833 1241 KT 1242 (1263)
Q Consensus 1241 ~~ 1242 (1263)
.|
T Consensus 622 ~g 623 (1490)
T TIGR01271 622 EG 623 (1490)
T ss_pred CC
Confidence 65
No 444
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=102.54 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=71.3
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcc-hhHHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLR-NNMFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~-~~~~~~ad~~~ 1237 (1263)
++..||=|||.++-||..|- .||.+++|||||.|||.....++.++|++.. .+++++..||. ..+..+|||++
T Consensus 153 ~vr~LSlGqRmraeLaaaLL----h~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~ 228 (325)
T COG4586 153 PVRKLSLGQRMRAELAAALL----HPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228 (325)
T ss_pred hhhhccchHHHHHHHHHHhc----CCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheE
Confidence 68899999999999997775 4588999999999999999999999999865 37899999999 78899999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.|..|.
T Consensus 229 ~I~~Gq 234 (325)
T COG4586 229 LIDQGQ 234 (325)
T ss_pred EeeCCc
Confidence 999985
No 445
>PLN03232 ABC transporter C family member; Provisional
Probab=98.75 E-value=1.6e-08 Score=136.31 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=66.8
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHH-HHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHY-VKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~-l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
..||||||||++||+++.- +||++|||||+++||+.+...+.+. +....++.++|+|||+......||+++.+..
T Consensus 739 ~~LSGGQkQRIaLARAly~----~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYS----NSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSE 814 (1495)
T ss_pred cccCHHHHHHHHHHHHHhc----CCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeC
Confidence 4799999999999999974 4999999999999999999887654 5555568899999999999999999999976
Q ss_pred c
Q 000833 1242 T 1242 (1263)
Q Consensus 1242 ~ 1242 (1263)
|
T Consensus 815 G 815 (1495)
T PLN03232 815 G 815 (1495)
T ss_pred C
Confidence 5
No 446
>PLN03130 ABC transporter C family member; Provisional
Probab=98.75 E-value=1.7e-08 Score=135.75 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=66.8
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHH-HHHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGH-YVKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~-~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
..||||||||++||+++.-. +|+||||||+++||+.+...+.+ .+....++.++|+|||+..+...||+++.+..
T Consensus 739 ~~LSGGQKQRIaLARAly~~----~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~ 814 (1622)
T PLN03130 739 VNISGGQKQRVSMARAVYSN----SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHE 814 (1622)
T ss_pred CCCCHHHHHHHHHHHHHhCC----CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeC
Confidence 46999999999999999744 99999999999999999988764 45555567899999999999999999999986
Q ss_pred c
Q 000833 1242 T 1242 (1263)
Q Consensus 1242 ~ 1242 (1263)
|
T Consensus 815 G 815 (1622)
T PLN03130 815 G 815 (1622)
T ss_pred C
Confidence 5
No 447
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.74 E-value=2.1e-08 Score=114.00 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=75.0
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcc-hhHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLR-NNMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~-~~~~~~ad~~~ 1237 (1263)
.++..||||-+|.|.||..|+.. |+++||||||-|+|......|..+|.+++. +.-+|+||.. |+++.+|||++
T Consensus 397 ~~v~~LSGGNQQKVvlarwL~~~----p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl 472 (500)
T COG1129 397 QPIGTLSGGNQQKVVLARWLATD----PKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL 472 (500)
T ss_pred chhhcCCchhhhhHHHHHHHhcC----CCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE
Confidence 46889999999999999999977 999999999999999999999999999975 7899999988 89999999999
Q ss_pred EEEecCC
Q 000833 1238 GIYKTDN 1244 (1263)
Q Consensus 1238 ~v~~~~~ 1244 (1263)
.+..|..
T Consensus 473 Vm~~Gri 479 (500)
T COG1129 473 VMREGRI 479 (500)
T ss_pred EEECCEE
Confidence 9998753
No 448
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.73 E-value=1.9e-08 Score=135.78 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=69.4
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHH---hcCCCeEEEEEcchhHHHhcceeE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKD---RTKDAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~---~~~~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
....||||||+|++||+++... ||++|||||+++||+.+...+.+.+.. +.++..+|+|||+...+..||+++
T Consensus 757 ~g~~LSGGQkqRiaLARAl~~~----~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii 832 (1522)
T TIGR00957 757 KGVNLSGGQKQRVSLARAVYSN----ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII 832 (1522)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC----CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE
Confidence 3458999999999999999855 999999999999999999999998853 345789999999998888899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 833 ~l~~G~ 838 (1522)
T TIGR00957 833 VMSGGK 838 (1522)
T ss_pred EecCCe
Confidence 997653
No 449
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.73 E-value=1.3e-08 Score=110.78 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=70.7
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecC
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
.||||||||||||+.+--. |.+++|||.|++||..+-+.+-..|.+++.+.+-|+|.|+..+.-.||-+..+..|.
T Consensus 674 kLSGGEKQRVAiARtiLK~----P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 674 KLSGGEKQRVAIARTILKA----PSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGR 749 (790)
T ss_pred ccCCcchhhHHHHHHHhcC----CcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCe
Confidence 6899999999999987633 778899999999999999999999999999999999999999999999999999885
Q ss_pred C
Q 000833 1244 N 1244 (1263)
Q Consensus 1244 ~ 1244 (1263)
.
T Consensus 750 I 750 (790)
T KOG0056|consen 750 I 750 (790)
T ss_pred E
Confidence 3
No 450
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.72 E-value=3.5e-08 Score=109.47 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=74.3
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcc-hhHHHhccee
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLR-NNMFELADRL 1236 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~-~~~~~~ad~~ 1236 (1263)
...+..||-||+||+-|--.|... +.++|||||||-|-|.-+..++..|+.+.. +..+|+|||+ .+++++|||+
T Consensus 135 ~~~V~dLsVG~qQRVEIlKaLyr~----a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 135 DAKVADLSVGEQQRVEILKALYRG----ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRV 210 (501)
T ss_pred cceeecCCcchhHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCee
Confidence 457889999999999999888655 999999999999999999999999998875 8899999999 7999999999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
-.+.+|.
T Consensus 211 TVLR~Gk 217 (501)
T COG3845 211 TVLRRGK 217 (501)
T ss_pred EEEeCCe
Confidence 9998886
No 451
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.71 E-value=2.4e-08 Score=132.87 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=67.4
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCC-eEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhH--HHhcceeEEE
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTP-LYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNM--FELADRLVGI 1239 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p-~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~--~~~ad~~~~v 1239 (1263)
.||||||+|++||..|+.. |+ +++|||||+|||+.++..+.++|++++ .+..+|++||++.. +..+|+++.+
T Consensus 901 ~LSgGqrqRl~Ia~aL~~~----P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L 976 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVAK----PKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL 976 (1394)
T ss_pred CCCHHHhhHHHHHHHHHcC----CCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEE
Confidence 7999999999999999865 74 999999999999999999999999885 46899999999864 5789999999
Q ss_pred Eec
Q 000833 1240 YKT 1242 (1263)
Q Consensus 1240 ~~~ 1242 (1263)
.+|
T Consensus 977 ~~G 979 (1394)
T TIGR00956 977 QKG 979 (1394)
T ss_pred cCC
Confidence 876
No 452
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.71 E-value=2.1e-08 Score=96.48 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=85.2
Q ss_pred cCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-H
Q 000833 1153 RPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-E 1231 (1263)
Q Consensus 1153 ~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~ 1231 (1263)
.....+......||-||||+.-|+++++-. |.+++||||.|||-..-....+++|+.++..+-+++|-|+..++ .
T Consensus 136 gL~~~~~~~A~~LSHGqKQwLEIGMll~Q~----P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 136 GLGDERDRLAALLSHGQKQWLEIGMLLAQD----PKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVRE 211 (249)
T ss_pred ccchhhhhhhhhhccchhhhhhhheeeccC----CcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHH
Confidence 334455566789999999999999999855 88999999999999999999999999999999999999997665 7
Q ss_pred hcceeEEEEecC----CCceeEEecCCccccc
Q 000833 1232 LADRLVGIYKTD----NCTKSITINPGSFTVC 1259 (1263)
Q Consensus 1232 ~ad~~~~v~~~~----~~s~~~~~~~~~~~~~ 1259 (1263)
+|+++-.++.|. +.---|.-||.+..+|
T Consensus 212 ~A~~VTVlh~G~VL~EGsld~v~~dp~ViEvY 243 (249)
T COG4674 212 IADKVTVLHEGSVLAEGSLDEVQNDPKVIEVY 243 (249)
T ss_pred hhheeEEEeccceeecccHHHhhcCcceEeee
Confidence 899999999873 3333356666666666
No 453
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.71 E-value=6.2e-07 Score=101.87 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecCC-C---C----------------------cccccceeee
Q 000833 1100 EWRKKRLDEFMAGFNAISLKLKEMYQMITLGG-DAELELVDS-L---D----------------------PFSEGVVFSV 1152 (1263)
Q Consensus 1100 ~l~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~-~---~----------------------~~~~~~~~~~ 1152 (1263)
.+...+...+...+..+...+..+|..++.+. ...+....+ . + |+-..+.|.+
T Consensus 188 ~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~~~~l~y~~~~~~~~~~~~~~L~~~~~~d~~~g~T~~GPHRdDl~~~~ 267 (365)
T TIGR00611 188 ELGAKVSAWRAEFIEKLEPEAQKAHQLLLPELESLSLFYRGELWDKETDYAEALARNFERDLERGYTLVGPHRDDLRFRL 267 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEeCchHHHHHHHHHHHHHhHHHHHHcCCCCCCcchhceEEEE
Confidence 33334455566677778888888888875432 344333221 0 0 1111133333
Q ss_pred cCCCcccccc-ccCChhHHHHHHHHHHHHhc-----cCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcc
Q 000833 1153 RPPKKSWKNI-ANLSGGEKTLSSLALVFALH-----HYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLR 1226 (1263)
Q Consensus 1153 ~~~~~~~~~~-~~lSGGek~~~~la~~~a~~-----~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~ 1226 (1263)
. .+++ ..+|+||+.+++||+.+|.. ....+|+++||||+++||+..+..+.++|... +.|+|++||+
T Consensus 268 ~-----g~~~~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~ 340 (365)
T TIGR00611 268 N-----GLPVEDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAIS 340 (365)
T ss_pred C-----CEEHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecC
Confidence 1 1233 35799999999999999972 23458999999999999999999999999654 5699999998
Q ss_pred hhH
Q 000833 1227 NNM 1229 (1263)
Q Consensus 1227 ~~~ 1229 (1263)
+..
T Consensus 341 ~~~ 343 (365)
T TIGR00611 341 LDH 343 (365)
T ss_pred hhh
Confidence 643
No 454
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3e-08 Score=95.38 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=59.7
Q ss_pred CccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-CCCeEEEEEcchhH
Q 000833 1156 KKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-KDAQFIIISLRNNM 1229 (1263)
Q Consensus 1156 ~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~~~q~i~ith~~~~ 1229 (1263)
+-...++.+||-||+.|+|||.+.+.+ +|+-|||||+++||..++..+..++.... .+.=||+.||.|.-
T Consensus 122 g~~dlp~~~LSAGQqRRvAlArL~ls~----~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 122 GLEDLPVGQLSAGQQRRVALARLWLSP----APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred cccccchhhcchhHHHHHHHHHHHcCC----CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 334457889999999999999998755 99999999999999999999999998765 46678888899743
No 455
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.70 E-value=0.0062 Score=81.20 Aligned_cols=129 Identities=16% Similarity=0.263 Sum_probs=68.2
Q ss_pred cCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhh-hhh-cccccccccccCCCCCceEEEEEEeeccccCCCcccc-c-
Q 000833 41 PFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQM-RLN-KVSELIHNSTNYQNLDSAGVSVHFQEIVDLDDGTYEA-I- 116 (1263)
Q Consensus 41 ~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~-r~~-~~~~~i~~g~~~~~~~~a~v~~~~~~~~~~~~~~~~~-~- 116 (1263)
.++ |-|-|+|-||+||||++.+|.|++|..++.+ .+. .-..|. ..|=|....+|-..+.. +++ ..+-+ .
T Consensus 15 ~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k~~~rksF~---~yYLP~~nSyIIYEY~R--~~G-~~~~vvl~ 87 (1201)
T PF12128_consen 15 KLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPKTSGRKSFD---DYYLPYSNSYIIYEYQR--EDG-QLCCVVLS 87 (1201)
T ss_pred ecC-CceeeecCCCCcHHHHHHHHHHhcCCCccccCCccchhhhHH---HHcCCCCCceEEEeeec--cCC-ceeEEEEe
Confidence 334 7788999999999999999999999876653 211 011110 00111112222222211 100 00000 0
Q ss_pred --CCceEEEEEEeecCCCceEEEc--C----cccCHHHHHHHHHhCCCCCCCCccccchhhHHHHHhcCCC
Q 000833 117 --QGSDFVISRVAFRDNSSKYYIN--D----RPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 179 (1263)
Q Consensus 117 --~~~~~~i~r~~~~~~~~~y~in--~----~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~~~ 179 (1263)
.+...+--|.|...-...|||+ + .+.+..++..-+...|+.+.+. |...+-..|+.-++.
T Consensus 88 ~~s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~r~~~~~gv~~S~~---i~~~eYR~IIqn~~~ 155 (1201)
T PF12128_consen 88 RKSDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWELIRELRRKGVQVSRK---ITTSEYRAIIQNNRS 155 (1201)
T ss_pred ecCCCCceeeeeccCccchhhcccccCccccccccHHHHHHHHHhCCCeeecC---cCHHHHHHHHcCCCc
Confidence 0001122355544556677884 3 3466678878888888877652 335555666665554
No 456
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.68 E-value=3.8e-08 Score=107.00 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=69.2
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc--CCCeEEEEEcchhHHH-hcce
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT--KDAQFIIISLRNNMFE-LADR 1235 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~--~~~q~i~ith~~~~~~-~ad~ 1235 (1263)
.+++..|||||.||+|||..|+ +++++|+||||.|+||...+-.+++.|++.. .....++|-|+--+.. +||+
T Consensus 450 e~~v~~LSGGELQRvaIaa~L~----reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr 525 (591)
T COG1245 450 ERPVDELSGGELQRVAIAAALS----READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDR 525 (591)
T ss_pred hcccccCCchhHHHHHHHHHhc----cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhce
Confidence 3567889999999999998887 4599999999999999999999999998865 4678899999976664 6999
Q ss_pred eEEEEecCC
Q 000833 1236 LVGIYKTDN 1244 (1263)
Q Consensus 1236 ~~~v~~~~~ 1244 (1263)
++...-.++
T Consensus 526 ~ivF~GePg 534 (591)
T COG1245 526 LIVFEGEPG 534 (591)
T ss_pred EEEEecCCC
Confidence 987765443
No 457
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.67 E-value=2.4e-08 Score=91.27 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=65.4
Q ss_pred CccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHh--cCCCeEEEEEcchhHHHhc
Q 000833 1156 KKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDR--TKDAQFIIISLRNNMFELA 1233 (1263)
Q Consensus 1156 ~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~--~~~~q~i~ith~~~~~~~a 1233 (1263)
+.-.+.+.+||||||+|++|-+.+.-. |.+++||||++.||..-+..+.+++-.. +.+.-.|.|||+.+-....
T Consensus 126 g~f~~dP~tlSGGQrARvaL~R~Lla~----Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpag 201 (213)
T COG4136 126 GAFHQDPATLSGGQRARVALLRALLAQ----PKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAG 201 (213)
T ss_pred hhhhcChhhcCcchHHHHHHHHHHHhC----cceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCC
Confidence 334567889999999999999988766 8899999999999999999999987653 3477889999996545555
Q ss_pred ceeEEEE
Q 000833 1234 DRLVGIY 1240 (1263)
Q Consensus 1234 d~~~~v~ 1240 (1263)
.|++-+-
T Consensus 202 srVie~~ 208 (213)
T COG4136 202 SRVIEMA 208 (213)
T ss_pred Ceeeeee
Confidence 6665543
No 458
>PTZ00243 ABC transporter; Provisional
Probab=98.67 E-value=4.9e-08 Score=131.32 Aligned_cols=79 Identities=23% Similarity=0.198 Sum_probs=67.8
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHH-HHHhcCCCeEEEEEcchhHHHhcceeEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHY-VKDRTKDAQFIIISLRNNMFELADRLVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~-l~~~~~~~q~i~ith~~~~~~~ad~~~~v 1239 (1263)
....||||||+|++||++++.. |+++|||||+++||+.....+... +....++..+|+|||+......||+++.+
T Consensus 779 ~g~~LSGGQkqRvaLARAl~~~----p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l 854 (1560)
T PTZ00243 779 KGVNLSGGQKARVSLARAVYAN----RDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854 (1560)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC----CCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 4568999999999999999865 899999999999999998888764 33333578999999999888999999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 855 ~~G~ 858 (1560)
T PTZ00243 855 GDGR 858 (1560)
T ss_pred ECCE
Confidence 8753
No 459
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=98.66 E-value=2.9e-08 Score=110.22 Aligned_cols=80 Identities=15% Similarity=0.283 Sum_probs=57.5
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhcccccccc-cccCCCCCceEE
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHN-STNYQNLDSAGV 98 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~~-g~~~~~~~~a~v 98 (1263)
|+|++|+|.||.++....+ +|+ +.|++||+||+|||||++||+++||.+.. .|.=...||-.. +........-.|
T Consensus 1 M~l~~i~i~~FRgi~~~~~--~l~-~~t~liG~N~~GKss~l~Al~~~l~~~~~-~~~f~~~DFh~~~~~~~~~~~~i~i 76 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSL--PLD-DNTVLIGENNWGKSSLLDALSLLLSPSRR-LYQFTESDFHVPPGEEHDQERHIQI 76 (373)
T ss_pred CeEEEEEEeccCccceEEE--Eec-CceEEEcCCCccHhHHHHHHHHHhCCCcc-ccccCHHHhCCCcccccccCceEEE
Confidence 8999999999999999877 777 68999999999999999999999997532 222233344322 222223344455
Q ss_pred EEEEe
Q 000833 99 SVHFQ 103 (1263)
Q Consensus 99 ~~~~~ 103 (1263)
.++|.
T Consensus 77 ~~~F~ 81 (373)
T PF11398_consen 77 VLTFC 81 (373)
T ss_pred EEEec
Confidence 56664
No 460
>PLN03140 ABC transporter G family member; Provisional
Probab=98.66 E-value=2e-08 Score=133.00 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=71.0
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcch--hHHHhccee
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRN--NMFELADRL 1236 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~--~~~~~ad~~ 1236 (1263)
.+..||||||+|++||..++.. |++++|||||+|||..++..+.+.|+++.+ +..+|++||+| .+..++|++
T Consensus 333 ~~rglSGGerkRVsia~aL~~~----p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~v 408 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGP----TKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI 408 (1470)
T ss_pred cccCCCcccceeeeehhhhcCC----CcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheE
Confidence 4678999999999999998855 899999999999999999999999998864 67899999984 788999999
Q ss_pred EEEEecC
Q 000833 1237 VGIYKTD 1243 (1263)
Q Consensus 1237 ~~v~~~~ 1243 (1263)
+.+..|.
T Consensus 409 ilL~~G~ 415 (1470)
T PLN03140 409 ILLSEGQ 415 (1470)
T ss_pred EEeeCce
Confidence 9998774
No 461
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.63 E-value=0.0077 Score=78.52 Aligned_cols=41 Identities=12% Similarity=0.347 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 747 ELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSR 787 (1263)
Q Consensus 747 el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~ 787 (1263)
++..+..+...++.++..+.....-....+..+...+...+
T Consensus 662 ~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K 702 (1822)
T KOG4674|consen 662 DFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTK 702 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 462
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.62 E-value=6.4e-05 Score=80.07 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 741 IINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHL 779 (1263)
Q Consensus 741 i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l 779 (1263)
+..++.+++.+...+..+...+..........+.++..+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l 41 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASL 41 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333333333333
No 463
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=2.1e-07 Score=102.17 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=61.6
Q ss_pred cccCChhHHHHHHHHHHHHhc-----cCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcc-hhHHHhc--
Q 000833 1162 IANLSGGEKTLSSLALVFALH-----HYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLR-NNMFELA-- 1233 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~-----~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~-~~~~~~a-- 1233 (1263)
...+|+||+++++||+.+|.. ....||+++||||+++||+..+..+...|..+. |+|++||+ +.+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~ 257 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLR 257 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhcc
Confidence 567899999999999998742 235689999999999999999999999997653 67777766 5555666
Q ss_pred -ceeEEEEec
Q 000833 1234 -DRLVGIYKT 1242 (1263)
Q Consensus 1234 -d~~~~v~~~ 1242 (1263)
++++.+..|
T Consensus 258 ~~~i~~l~~g 267 (270)
T cd03242 258 RAQIFRVDAG 267 (270)
T ss_pred CccEEEEeCc
Confidence 567776554
No 464
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=6.2e-08 Score=117.61 Aligned_cols=77 Identities=26% Similarity=0.345 Sum_probs=70.1
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcch--hHHHhcceeEEE
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRN--NMFELADRLVGI 1239 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~--~~~~~ad~~~~v 1239 (1263)
..+|||||.|+++|.-+... ||+++|||||+|||...+..+...|++++. +..+|+.-|+| +++.+-|+++.+
T Consensus 169 rgiSGGErkRvsia~Ell~~----P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lL 244 (613)
T KOG0061|consen 169 RGLSGGERKRVSIALELLTD----PSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLL 244 (613)
T ss_pred CccccchhhHHHHHHHHHcC----CCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhh
Confidence 57899999999999999877 999999999999999999999999999875 78888888996 778999999999
Q ss_pred EecC
Q 000833 1240 YKTD 1243 (1263)
Q Consensus 1240 ~~~~ 1243 (1263)
..|.
T Consensus 245 s~G~ 248 (613)
T KOG0061|consen 245 SEGE 248 (613)
T ss_pred cCCc
Confidence 9873
No 465
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.56 E-value=3.3e-08 Score=108.78 Aligned_cols=48 Identities=35% Similarity=0.650 Sum_probs=42.5
Q ss_pred EEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCc
Q 000833 21 FIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGK 70 (1263)
Q Consensus 21 ~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~ 70 (1263)
||+++.++||+||++.... .|. ++++|+|+|||||||+++|+.|+.|.
T Consensus 1 MI~~~~IkNFkSf~e~~~~-~~~-~in~I~G~N~sGKSNlleAl~f~~~~ 48 (371)
T COG1106 1 MIKSFKIKNFKSFRELELE-DFG-KINIIYGANGAGKSNLLEALYFLKGL 48 (371)
T ss_pred CceEEEecccccHHHhhhc-ccc-ceEEEEcCCCCchhHHHHHHHHHHHh
Confidence 6999999999999998763 454 79999999999999999999988664
No 466
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=9.9e-08 Score=102.36 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=60.7
Q ss_pred ccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcce-eEEE
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADR-LVGI 1239 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~-~~~v 1239 (1263)
.+..||||+|+||+||-+.. ..|+++||||||.+||-..+..+++.|.+.. .-||+|||+..++.-.|. +|+|
T Consensus 701 kikdLSGGQKaRValaeLal----~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVv 774 (807)
T KOG0066|consen 701 KIKDLSGGQKARVALAELAL----GGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVV 774 (807)
T ss_pred eeeecCCcchHHHHHHHHhc----CCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEE
Confidence 45689999999999996543 2488999999999999999999999998774 579999999877755444 4444
Q ss_pred Ee
Q 000833 1240 YK 1241 (1263)
Q Consensus 1240 ~~ 1241 (1263)
..
T Consensus 775 E~ 776 (807)
T KOG0066|consen 775 EN 776 (807)
T ss_pred cc
Confidence 43
No 467
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.51 E-value=9.6e-08 Score=106.47 Aligned_cols=89 Identities=16% Similarity=0.255 Sum_probs=72.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~~ 1238 (1263)
.++++||+|||+||..|.++. ++|.++||||||.|||...+..+.+.|.+.- ..+|+|||+-.+ ..+|+.++.
T Consensus 505 ~p~~~LS~Gqr~rVlFa~l~~----kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~ 578 (614)
T KOG0927|consen 505 VPMSQLSDGQRRRVLFARLAV----KQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWV 578 (614)
T ss_pred cchhhcccccchhHHHHHHHh----cCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHh
Confidence 478999999999999887665 4488999999999999999999999998774 578999999544 478999988
Q ss_pred EEecCCCceeEEecCCccccc
Q 000833 1239 IYKTDNCTKSITINPGSFTVC 1259 (1263)
Q Consensus 1239 v~~~~~~s~~~~~~~~~~~~~ 1259 (1263)
+..+ ++++-++.|..|
T Consensus 579 c~~~-----~~~~~~G~i~~y 594 (614)
T KOG0927|consen 579 CENG-----TVTKWDGDIEIY 594 (614)
T ss_pred hccC-----ceeecCccHHHH
Confidence 8765 445556555433
No 468
>PRK14079 recF recombination protein F; Provisional
Probab=98.51 E-value=3.8e-06 Score=95.27 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCC--C----------------------cccccceeeecC
Q 000833 1099 DEWRKKRLDEFMAGFNAISLKLKEMYQMITLGGDAELELVDSL--D----------------------PFSEGVVFSVRP 1154 (1263)
Q Consensus 1099 ~~l~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~----------------------~~~~~~~~~~~~ 1154 (1263)
..+...+...+...+..++..+..+|..+..+....+...... + |+-+-+.|.+.
T Consensus 178 ~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~l~l~y~~~~~~~~~~~~l~~~~~~d~~~g~T~~GpHRdD~~~~~~- 256 (349)
T PRK14079 178 VKLGDEIMALRRRALTRLSELAREAYAELGSRKPLRLELSESTAPEGYLAALEARRAEELARGATVVGPHRDDLVLTLE- 256 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEecCcCHHHHHHHHHHhhHHHHHcCCCCCCCchhceEEEEC-
Confidence 3344444555666677788888888888743223333332210 0 11111333332
Q ss_pred CCcccccc-ccCChhHHHHHHHHHHHHh----cc-CCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchh
Q 000833 1155 PKKSWKNI-ANLSGGEKTLSSLALVFAL----HH-YKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNN 1228 (1263)
Q Consensus 1155 ~~~~~~~~-~~lSGGek~~~~la~~~a~----~~-~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~ 1228 (1263)
| +++ ..+|+||+.+++||+.||. .. ...+|+++||||+++||+..+..+.++|... .|+++.|- .
T Consensus 257 -g---~~~~~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t--~ 327 (349)
T PRK14079 257 -G---RPAHRYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGT--E 327 (349)
T ss_pred -C---EehHHhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcC--C
Confidence 1 233 3569999999999999982 11 2468999999999999999999999988543 36655543 2
Q ss_pred HHHhcceeEEEEec
Q 000833 1229 MFELADRLVGIYKT 1242 (1263)
Q Consensus 1229 ~~~~ad~~~~v~~~ 1242 (1263)
...++++++.|..+
T Consensus 328 ~~~~~~~~~~~~~~ 341 (349)
T PRK14079 328 APPGAALTLRIEAG 341 (349)
T ss_pred CCCCCceEEEEecc
Confidence 46788999999764
No 469
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.45 E-value=3.1e-07 Score=95.94 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHH-HHHHhcC-CCeEEEEEcchhHHHh
Q 000833 1155 PKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGH-YVKDRTK-DAQFIIISLRNNMFEL 1232 (1263)
Q Consensus 1155 ~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~-~l~~~~~-~~q~i~ith~~~~~~~ 1232 (1263)
+......++.+|+|+++++.++..+ .+|++++||||++|+|+.....+.. ++..+.. +..+|++||.+.+...
T Consensus 82 ~~~l~~~~s~fs~g~~~~~~i~~~~-----~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~ 156 (200)
T cd03280 82 EQSIEQSLSTFSSHMKNIARILQHA-----DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAY 156 (200)
T ss_pred hhhhhcCcchHHHHHHHHHHHHHhC-----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHH
Confidence 3344556788999999998887553 3588999999999999999998864 5666543 6899999999888899
Q ss_pred cceeEEEEec
Q 000833 1233 ADRLVGIYKT 1242 (1263)
Q Consensus 1233 ad~~~~v~~~ 1242 (1263)
||+++.+..+
T Consensus 157 ~d~~~~l~~g 166 (200)
T cd03280 157 AYKREGVENA 166 (200)
T ss_pred HhcCCCeEEE
Confidence 9999888764
No 470
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.45 E-value=0.013 Score=71.99 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 000833 1045 RTLEMVALLEAQLKE 1059 (1263)
Q Consensus 1045 ~l~~~i~~l~~~i~~ 1059 (1263)
...+++..+...+.+
T Consensus 525 k~rek~~kl~~ql~k 539 (775)
T PF10174_consen 525 KKREKHEKLEKQLEK 539 (775)
T ss_pred HhhhHHHHHHHHHHH
Confidence 334444444444444
No 471
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.43 E-value=3.3e-07 Score=107.20 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=77.7
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
++...|||||-||+=||.-|+-. ....-+|||||||+||-..-+..+.+.|.++.+ +..+|+|-|+..++..||.++-
T Consensus 818 QpatTLSGGEaQRvKLA~EL~k~-~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IID 896 (935)
T COG0178 818 QPATTLSGGEAQRVKLAKELSKR-STGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIID 896 (935)
T ss_pred CccccccchHHHHHHHHHHHhhc-cCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEE
Confidence 46779999999999999888743 344579999999999999999999999999875 7899999999999999999987
Q ss_pred EEecC---CCceeEEecCCccc
Q 000833 1239 IYKTD---NCTKSITINPGSFT 1257 (1263)
Q Consensus 1239 v~~~~---~~s~~~~~~~~~~~ 1257 (1263)
+--+. |-.-+.+=.|+...
T Consensus 897 LGPeGG~~GG~iva~GTPeeva 918 (935)
T COG0178 897 LGPEGGDGGGEIVASGTPEEVA 918 (935)
T ss_pred cCCCCCCCCceEEEecCHHHHH
Confidence 77632 22333444454443
No 472
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.41 E-value=4.7e-07 Score=101.17 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=68.8
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhH-HHhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM-FELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~-~~~ad~~~ 1237 (1263)
.+.+..||||.+.|+|||.+|-.- |.+++|||||++||...+..+-.+|...... .+++|+|...+ -.+|.+++
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~k----P~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii 290 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQK----PDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNII 290 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcC----CCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhh
Confidence 356778999999999999999766 8899999999999999999999999887644 67777787544 48999999
Q ss_pred EEEecCC
Q 000833 1238 GIYKTDN 1244 (1263)
Q Consensus 1238 ~v~~~~~ 1244 (1263)
.++....
T Consensus 291 ~l~~kkl 297 (614)
T KOG0927|consen 291 HLDNKKL 297 (614)
T ss_pred eecccce
Confidence 9998763
No 473
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.40 E-value=5.1e-07 Score=105.14 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=69.6
Q ss_pred cCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEecC
Q 000833 1164 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTD 1243 (1263)
Q Consensus 1164 ~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~ 1243 (1263)
.|||||+||+|+|+++-+. |.++||||.|++||+....++..+|++..++..||-|+|++.+..+.++.+.+....
T Consensus 515 vLS~GEqQRlafARilL~k----P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~~~ 590 (604)
T COG4178 515 VLSGGEQQRLAFARLLLHK----PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLDDA 590 (604)
T ss_pred hcChhHHHHHHHHHHHHcC----CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecccc
Confidence 5799999999999999877 889999999999999999999999999889999999999999998888877776643
No 474
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.40 E-value=0.01 Score=68.71 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 744 AEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKS 795 (1263)
Q Consensus 744 l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~ 795 (1263)
++.+++....+...+.+....++.+...+...+..++.++...+.+...+..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444444444444444444444444444443333333
No 475
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=5.3e-07 Score=114.78 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=68.6
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHH-HHHhcCCCeEEEEEcchhHHHhcceeEEEEe
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHY-VKDRTKDAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~-l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
-+||||||||++||+++ |.++++|+||.|.+++|....+.+++- |..+-++.++|+|||+.+....||.++.+..
T Consensus 642 inLSGGQKqRIsLARAV----Y~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~ 717 (1381)
T KOG0054|consen 642 INLSGGQKQRISLARAV----YQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKD 717 (1381)
T ss_pred cCCcHhHHHHHHHHHHH----hccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecC
Confidence 48999999999999988 566999999999999999999998875 4445568899999999999999999999998
Q ss_pred cC
Q 000833 1242 TD 1243 (1263)
Q Consensus 1242 ~~ 1243 (1263)
|.
T Consensus 718 G~ 719 (1381)
T KOG0054|consen 718 GK 719 (1381)
T ss_pred Ce
Confidence 74
No 476
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.37 E-value=1.6e-07 Score=97.57 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=35.3
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHH
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFV 67 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~ 67 (1263)
|||.+|.++||+||+.... +.. ++|+|||.||+||||++|++.++
T Consensus 1 ~~l~si~vknyRs~r~l~l--ei~-~~nviIGANGaGKSn~~~~l~~l 45 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDL--EIR-RVNVIIGANGAGKSNFYDALRLL 45 (373)
T ss_pred CccchhhhhcchhHHhccc--ccc-ceEEEEcCCCCchhHHHHHHHHH
Confidence 6788888888888887765 444 78888888888888888888765
No 477
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.33 E-value=8.6e-07 Score=78.08 Aligned_cols=54 Identities=31% Similarity=0.352 Sum_probs=43.1
Q ss_pred ccccccCChhHH-HHHHHHHHHHhccC--------CCCCeEEeecCcCCCCHHHHHHHHHHHH
Q 000833 1159 WKNIANLSGGEK-TLSSLALVFALHHY--------KPTPLYVMDEIDAALDFKNVSIVGHYVK 1212 (1263)
Q Consensus 1159 ~~~~~~lSGGek-~~~~la~~~a~~~~--------~~~p~~ilDE~d~~ld~~~~~~~~~~l~ 1212 (1263)
.++...+||||+ ..+++|+++|+... ..+.+++||||+++||+.++..++++|+
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 457789999999 77888887775431 1235999999999999999999999886
No 478
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=2e-06 Score=87.46 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHh-cCCCeEEEEEcchhHH-HhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDR-TKDAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~-~~~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
.|+..+|-|+++|.|.|+..+.. |++||+||+-+.-|+....+-.+.+.++ .++..+|+|||+...+ .+||+++
T Consensus 143 ~PvktYSSGM~aRLaFsia~~~~----pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i 218 (249)
T COG1134 143 QPVKTYSSGMYARLAFSVATHVE----PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAI 218 (249)
T ss_pred CchhhccHHHHHHHHHhhhhhcC----CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeE
Confidence 47889999999999998888766 9999999999999999999999999988 5689999999996555 7999999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+.+|.
T Consensus 219 ~l~~G~ 224 (249)
T COG1134 219 WLEHGQ 224 (249)
T ss_pred EEeCCE
Confidence 999874
No 479
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=4e-07 Score=88.02 Aligned_cols=49 Identities=27% Similarity=0.510 Sum_probs=38.1
Q ss_pred EEecC-ccccCCCcccccC-----CCcceEEEcCCCCChhHHHHHHHHHcCcchh
Q 000833 25 MVMRN-FKSYAGEQRVGPF-----HKSFSAVVGPNGSGKSNVIDAMLFVFGKRAK 73 (1263)
Q Consensus 25 l~l~n-Fks~~~~~~~~~~-----~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~ 73 (1263)
|++.| -|+|.+..++++. .+|+|+||||||+||||+|..++-+++..++
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G 56 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG 56 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCc
Confidence 45556 4777776666544 3799999999999999999999988876544
No 480
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.31 E-value=0.011 Score=72.19 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 739 EAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKE 789 (1263)
Q Consensus 739 ~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~ 789 (1263)
..+..+...+..++.++..+...+..+...-......+..+......+++.
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ 155 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKS 155 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666555555555544444444444444444444433
No 481
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.31 E-value=0.016 Score=67.07 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 740 AIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKS 786 (1263)
Q Consensus 740 ~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~ 786 (1263)
.+.....+..++......++.+...++.++..++..+.....+...+
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443333333333
No 482
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=7.4e-07 Score=99.00 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=64.3
Q ss_pred ccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHH-HhcceeE
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF-ELADRLV 1237 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~-~~ad~~~ 1237 (1263)
.+++..||||=|-+++||+++-.. |++++|||||..||..++..+-.+|..+. .++|+|||+..+. ..|.-++
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~----pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdII 266 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAK----PDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDII 266 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcC----CCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHH
Confidence 457889999999999999988655 89999999999999999999999998776 7999999996555 4565555
Q ss_pred EEE
Q 000833 1238 GIY 1240 (1263)
Q Consensus 1238 ~v~ 1240 (1263)
...
T Consensus 267 H~~ 269 (582)
T KOG0062|consen 267 HLE 269 (582)
T ss_pred HHh
Confidence 443
No 483
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.30 E-value=1.7e-06 Score=101.58 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=71.2
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHHHhcceeEE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVG 1238 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~ 1238 (1263)
+....|||||-||+-||--+...- -.=+||||||..||=+.-..++...|+.+.+ +.++|+|.|+++++..||+++=
T Consensus 477 R~a~TLSGGEaQRIRLAtqiGS~L--tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iID 554 (935)
T COG0178 477 RSAGTLSGGEAQRIRLATQIGSGL--TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIID 554 (935)
T ss_pred ccCCCcChhHHHHHHHHHHhcccc--eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEe
Confidence 456799999999999998776331 1348999999999999999999999999886 7899999999999999999988
Q ss_pred EEecCC
Q 000833 1239 IYKTDN 1244 (1263)
Q Consensus 1239 v~~~~~ 1244 (1263)
|--+.|
T Consensus 555 iGPgAG 560 (935)
T COG0178 555 IGPGAG 560 (935)
T ss_pred eCCCCC
Confidence 776543
No 484
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.28 E-value=2.2e-06 Score=81.56 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=72.4
Q ss_pred cccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhHH-Hhcc
Q 000833 1158 SWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNMF-ELAD 1234 (1263)
Q Consensus 1158 ~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~~-~~ad 1234 (1263)
.+-.+..||-|||||||||+++.+. |.++|-||.-++||...+..+.+++-++.. +.-||.||.+..++ .+||
T Consensus 143 an~~~~~la~~QKQRVaLARALIL~----P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D 218 (267)
T COG4167 143 ANYYPHMLAPGQKQRVALARALILR----PKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISD 218 (267)
T ss_pred cccchhhcCchhHHHHHHHHHHhcC----CcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcc
Confidence 3446789999999999999999998 889999999999999999999998877653 78999999887777 5799
Q ss_pred eeEEEEecC
Q 000833 1235 RLVGIYKTD 1243 (1263)
Q Consensus 1235 ~~~~v~~~~ 1243 (1263)
.++++..|.
T Consensus 219 ~viVM~EG~ 227 (267)
T COG4167 219 QVLVMHEGE 227 (267)
T ss_pred cEEEEecCc
Confidence 999999875
No 485
>PF13175 AAA_15: AAA ATPase domain
Probab=98.27 E-value=5.6e-07 Score=107.22 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=58.6
Q ss_pred ccccCChhHHHHHHHHHHHHhccC--CCCC----eEEeecCcCCCCHHHHHHHHHHHHHhcC--CCeEEEEEcchhH
Q 000833 1161 NIANLSGGEKTLSSLALVFALHHY--KPTP----LYVMDEIDAALDFKNVSIVGHYVKDRTK--DAQFIIISLRNNM 1229 (1263)
Q Consensus 1161 ~~~~lSGGek~~~~la~~~a~~~~--~~~p----~~ilDE~d~~ld~~~~~~~~~~l~~~~~--~~q~i~ith~~~~ 1229 (1263)
++..+|.|.+.++.++++++.... ...+ ++++|||.++|-|...+.+++.|..++. +.|||+.||.|.+
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 677899999999999988765432 1112 9999999999999999999999999887 8999999999865
No 486
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.27 E-value=8.4e-07 Score=93.01 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=23.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHcC
Q 000833 43 HKSFSAVVGPNGSGKSNVIDAMLFVFG 69 (1263)
Q Consensus 43 ~~~~~~i~G~nGsGKS~i~~ai~~~lg 69 (1263)
.+.|++|+|||||||||+|++|.-++-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 368999999999999999999985554
No 487
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.26 E-value=1.2e-06 Score=111.85 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=69.9
Q ss_pred cccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCC-eEEEEEcch-hHHHhcceeE
Q 000833 1160 KNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDA-QFIIISLRN-NMFELADRLV 1237 (1263)
Q Consensus 1160 ~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~-q~i~ith~~-~~~~~ad~~~ 1237 (1263)
+++..+|||.|.+.++|+.+.-. |++++||||++||||..++.+.++|.+..++. -+|+.||.. +.-+.|||+.
T Consensus 694 ~~~~~ySgG~kRkLs~aialig~----p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 694 KQVRTYSGGNKRRLSFAIALIGD----PSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred cchhhCCCcchhhHHHHHHHhcC----CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhh
Confidence 35779999999999999998866 89999999999999999999999999988755 888888985 4457899999
Q ss_pred EEEecC
Q 000833 1238 GIYKTD 1243 (1263)
Q Consensus 1238 ~v~~~~ 1243 (1263)
.+..|.
T Consensus 770 Imv~G~ 775 (885)
T KOG0059|consen 770 IMVIGQ 775 (885)
T ss_pred eeecCe
Confidence 988874
No 488
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.26 E-value=6.6e-07 Score=104.04 Aligned_cols=63 Identities=17% Similarity=0.428 Sum_probs=52.4
Q ss_pred eEEEEEEecCccccCCCcccccCCCcceEEEcCCCCChhHHHHHHHHHcCcchhhhhhhccccccc
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIH 85 (1263)
Q Consensus 20 m~i~~l~l~nFks~~~~~~~~~~~~~~~~i~G~nGsGKS~i~~ai~~~lg~~~~~~r~~~~~~~i~ 85 (1263)
|+|.+|+|.||.||.+.++ .|..|+|++||+|-||||+||||++.+|+.. +.+..-...++++
T Consensus 1 M~L~~v~I~nFR~i~~lsl--~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~-~~~~~f~~~d~~~ 63 (581)
T COG3593 1 MHLERVKIKNFRGINRLSL--EFEEGLNVLIGENNSGKSSLLDALRLLLDPE-SDLYSFTLDDFHF 63 (581)
T ss_pred CcceeEEecccceeeeeee--eecCCceEEEcCCCcchHHHHHHHHHHcCCc-ccccceeeccCcc
Confidence 8999999999999999988 8888999999999999999999999999874 2233333344443
No 489
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.21 E-value=3e-06 Score=95.12 Aligned_cols=71 Identities=24% Similarity=0.248 Sum_probs=54.9
Q ss_pred cccccccCChhHHHHHHHHHHHHhccCCCC-CeEEeecCcCCCCHHHHHHHHHHHHHhcC-CCeEEEEEcchhHH
Q 000833 1158 SWKNIANLSGGEKTLSSLALVFALHHYKPT-PLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMF 1230 (1263)
Q Consensus 1158 ~~~~~~~lSGGek~~~~la~~~a~~~~~~~-p~~ilDE~d~~ld~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~ 1230 (1263)
...++..+|.|++++++|+..+... .+. +++++|||+++|.|.....++++|...++ +.|||+.||.|.++
T Consensus 230 ~~~~~~~~S~G~~~~l~l~~~l~~~--~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 230 KEIPLSSLSSGEKRLLSLLSLLLSA--KKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp EEGGGS---HHHHHHHHHHHHHHTT--TTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eEEeeccCCHHHHHHHHHHHHHhCc--CCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 3457788999999998666555543 223 89999999999999999999999988876 89999999999765
No 490
>PRK01156 chromosome segregation protein; Provisional
Probab=98.18 E-value=0.076 Score=69.64 Aligned_cols=93 Identities=30% Similarity=0.390 Sum_probs=80.0
Q ss_pred ccccccCChhHHHHHHHHHHHHhcc--CCCCCeEEeecCcCCCCHHHHHHHHHHHHHhc-C--C-CeEEEEEcchhHHHh
Q 000833 1159 WKNIANLSGGEKTLSSLALVFALHH--YKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-K--D-AQFIIISLRNNMFEL 1232 (1263)
Q Consensus 1159 ~~~~~~lSGGek~~~~la~~~a~~~--~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~-~--~-~q~i~ith~~~~~~~ 1232 (1263)
..++..||||++++++||+.||+.. +.+||++||||||+|||+.++..+..+|.... . + .|+|+|||++.+..+
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 4467789999999999998877754 36789999999999999999999999987532 2 2 599999999999999
Q ss_pred cceeEEEEecCCCceeEEe
Q 000833 1233 ADRLVGIYKTDNCTKSITI 1251 (1263)
Q Consensus 1233 ad~~~~v~~~~~~s~~~~~ 1251 (1263)
||++|.|.+..|+|.|..+
T Consensus 876 ~d~ii~~~~~~~~s~v~~~ 894 (895)
T PRK01156 876 ADVAYEVKKSSGSSKVIPL 894 (895)
T ss_pred cCeEEEEEecCCeeEEeeC
Confidence 9999999999998877654
No 491
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.12 E-value=0.055 Score=65.73 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000833 1043 LKRTLEMVALLEAQLKELNPNLDSITEYR-RKVAAYNERVEDLTTVT 1088 (1263)
Q Consensus 1043 ~~~l~~~i~~l~~~i~~l~~nl~~~~e~~-~~~~~~~~~~~~l~~l~ 1088 (1263)
+......+..+...++..+.|++.+...- .+...+..+......+.
T Consensus 446 ~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li 492 (560)
T PF06160_consen 446 FFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI 492 (560)
T ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888899998876553 44444444444444333
No 492
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.11 E-value=8e-07 Score=112.01 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhh
Q 000833 373 EKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFE 408 (1263)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 408 (1263)
..+...+++-......+...+..+..++..+...+.
T Consensus 274 ~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e 309 (859)
T PF01576_consen 274 EQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYE 309 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333344444444444444333
No 493
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.08 E-value=0.049 Score=63.69 Aligned_cols=61 Identities=11% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 738 AEAIINAEKELSAMVDNLSRIRQKIADAVKHYQASEKAVAHLEMELAKSRKEIESLKSQHS 798 (1263)
Q Consensus 738 ~~~i~~l~~el~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~ 798 (1263)
+..+.+++.++..++..+.+++.+...++..++.++.++++.+.+++....++..+..++.
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4555555556666666666555555555555555555555555555555555544444443
No 494
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.07 E-value=0.024 Score=59.95 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 296 SKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQEELDNDLRVSKEE 343 (1263)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~ 343 (1263)
..+..++..+.+....+..++.++.....++......+..++.++...
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k 77 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK 77 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444334443333333333
No 495
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.07 E-value=6.8e-06 Score=86.71 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=61.7
Q ss_pred cccCChhHHHHHHHHHHHHhccCCCCCeEEeecC---cCCCCHHHHHHHH-HHHHHhcCCCeEEEEEcchhHHHhcceeE
Q 000833 1162 IANLSGGEKTLSSLALVFALHHYKPTPLYVMDEI---DAALDFKNVSIVG-HYVKDRTKDAQFIIISLRNNMFELADRLV 1237 (1263)
Q Consensus 1162 ~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~---d~~ld~~~~~~~~-~~l~~~~~~~q~i~ith~~~~~~~ad~~~ 1237 (1263)
...+|+|++.+..++.++.. ..+++++||||| |+++|+....... +.+.+ ..+..+|++||...+..+||++.
T Consensus 87 ~~~lS~~~~e~~~~a~il~~--~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~ 163 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKS--ATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVP 163 (222)
T ss_pred hcCcChHHHHHHHHHHHHHh--CCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCC
Confidence 56789999999999988742 245889999999 9999998886543 44543 23678999999988899999988
Q ss_pred EEEec
Q 000833 1238 GIYKT 1242 (1263)
Q Consensus 1238 ~v~~~ 1242 (1263)
.+..+
T Consensus 164 ~i~~g 168 (222)
T cd03285 164 NVKNL 168 (222)
T ss_pred CeEEE
Confidence 77654
No 496
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.06 E-value=1.1e-05 Score=82.93 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=59.7
Q ss_pred eecCCCccccccccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHH-HHHHHhcC--CCeEEEEEcch
Q 000833 1151 SVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVG-HYVKDRTK--DAQFIIISLRN 1227 (1263)
Q Consensus 1151 ~~~~~~~~~~~~~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~-~~l~~~~~--~~q~i~ith~~ 1227 (1263)
.+..+......++.+|+|.++++.+... ..++++++||||++|+|+.....+. .+++.+.+ +..+|++||.+
T Consensus 48 ~~~~~d~~~~~~s~fs~~~~~l~~~l~~-----~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 48 RIGASDSLAQGLSTFMVEMKETANILKN-----ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred EeCCCCchhccccHHHHHHHHHHHHHHh-----CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 3334444556788999998875444322 2457899999999999999777754 45555542 67899999999
Q ss_pred hHHHhcceeEEE
Q 000833 1228 NMFELADRLVGI 1239 (1263)
Q Consensus 1228 ~~~~~ad~~~~v 1239 (1263)
.+..+|+..-.|
T Consensus 123 ~l~~~~~~~~~v 134 (185)
T smart00534 123 ELTKLADEHPGV 134 (185)
T ss_pred HHHHHhhcCccc
Confidence 888888754443
No 497
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.05 E-value=0.026 Score=59.70 Aligned_cols=12 Identities=42% Similarity=0.529 Sum_probs=4.9
Q ss_pred hHHHHhhHHHHH
Q 000833 394 PKLEENIPKLLK 405 (1263)
Q Consensus 394 ~~~~~~~~~~~~ 405 (1263)
..++..+..+..
T Consensus 110 ~~ler~i~~Le~ 121 (294)
T COG1340 110 KSLEREIERLEK 121 (294)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 498
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.03 E-value=2.3e-05 Score=81.98 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=66.3
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHh--cceeEEEE
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFEL--ADRLVGIY 1240 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~--ad~~~~v~ 1240 (1263)
..||-|...+.+++.+| ....|||+++||||-.+|=|.-...++.++.+.++.+|+||+||.+.+... ...++.+.
T Consensus 269 ~eLSDGTlRfl~l~t~L--lsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v~~~~ 346 (373)
T COG4637 269 RELSDGTLRFLALATLL--LSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSVFWLD 346 (373)
T ss_pred hhccccHHHHHHHHHHH--cCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccceEEec
Confidence 48999999988777544 566799999999999999999999999999999998999999999888754 45555555
Q ss_pred ecC
Q 000833 1241 KTD 1243 (1263)
Q Consensus 1241 ~~~ 1243 (1263)
+..
T Consensus 347 ~~e 349 (373)
T COG4637 347 REE 349 (373)
T ss_pred ccc
Confidence 543
No 499
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.02 E-value=0.031 Score=64.85 Aligned_cols=331 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH-hhhhccccchhhHhhhhhhhhhhHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 196 IGTDRYVEKIDESYKDYVVLFDLI-GLNHSMRNVPVLFKWLNWQRKKEIAWRFVCVSVLDVKNEAEAYMLKELSLLKWQE 274 (1263)
Q Consensus 196 ~g~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 274 (1263)
.+...+......=.+.+..|++.+ ...++++ .++ .+ ...|. .++..++.
T Consensus 28 ~~as~ir~sR~rEK~El~~LNDRLA~YIekVR---~LE--------aq------N~~L~-------------~di~~lr~ 77 (546)
T KOG0977|consen 28 NAASPIRDSREREKKELQELNDRLAVYIEKVR---FLE--------AQ------NRKLE-------------HDINLLRG 77 (546)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--------HH------HHHHH-------------HHHHHHHh
Q ss_pred ----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 275 ----------KATNLAYEDTSLKIVELQENVSKLEENLKNEREKIQDNNKTLKELESVHNKYMRRQEELDNDLRVSKEEF 344 (1263)
Q Consensus 275 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l 344 (1263)
..+...+..+..-++........+..++..+..++..+...+............++......+..++.++
T Consensus 78 ~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~ 157 (546)
T KOG0977|consen 78 VVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI 157 (546)
T ss_pred hccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhH---HHHHhhhhcccc
Q 000833 345 KEFERQDVKYREDSKHMKQKIKKLEVKVEKDSSKIDDLTKECEHATNQIPKLEENIPKLLKLFEN---VFIADTQNIITF 421 (1263)
Q Consensus 345 ~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 421 (1263)
..+...+..+.+++..++.....+...+..++..++.-..--..+......+.+++.-+...... ..........+-
T Consensus 158 ~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~ 237 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTA 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccc
Q ss_pred chhh--hhhhhHhHHHHHHHHHHHHHhhhH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000833 422 PFMN--MINLCVETERYRSELATVRAELEP-----WEKELIVHKGKLEVTCTESKLLCEKHEAGRKAFEDAQRQMDDILR 494 (1263)
Q Consensus 422 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 494 (1263)
++.. ...+...+..++.+.+..-..-.. +..++...+..............+++...+..+..+..++.+++.
T Consensus 238 ~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~ 317 (546)
T KOG0977|consen 238 DNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES 317 (546)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc
Q ss_pred HHHHHHHHHHHHHHhHHHH----HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 000833 495 RIDTKTTAIRNMQGDLEKN----KLEAMEAHNVEQECFKEQETLIPLEQAARQKVAELKSVMDSEK 556 (1263)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 556 (1263)
.-.-+...++.+...+..- +..+......+..+..+...+..+++.+-+--..+..++..|.
T Consensus 318 ~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YR 383 (546)
T KOG0977|consen 318 RNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYR 383 (546)
T ss_pred cChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHH
No 500
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.01 E-value=1.6e-05 Score=101.77 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=71.8
Q ss_pred ccCChhHHHHHHHHHHHHhccCCCCCeEEeecCcCCCCHHHHHHHHHHHHHhcCCCeEEEEEcchhHHHhcceeEEEEec
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKT 1242 (1263)
Q Consensus 1163 ~~lSGGek~~~~la~~~a~~~~~~~p~~ilDE~d~~ld~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~ 1242 (1263)
.++|-||||+++||+++--. +.++||||+||++|+..=..|-+.|++..+++++|.|-||-.+.--||+++++.+|
T Consensus 1274 ~N~SvGQRQLlCLARALLr~----skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G 1349 (1381)
T KOG0054|consen 1274 ENFSVGQRQLLCLARALLRK----SKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAG 1349 (1381)
T ss_pred ccCChHHHHHHHHHHHHhcc----CCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCC
Confidence 46899999999999999744 89999999999999999999999999988999999999998888899999999998
Q ss_pred C
Q 000833 1243 D 1243 (1263)
Q Consensus 1243 ~ 1243 (1263)
.
T Consensus 1350 ~ 1350 (1381)
T KOG0054|consen 1350 R 1350 (1381)
T ss_pred e
Confidence 4
Done!