Query 000833
Match_columns 1263
No_of_seqs 224 out of 2838
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 21:37:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000833.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_18-21//hhsearch_pdb/000833hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ad8_A DNA repair protein RECN 1.0 1 1 235.7 39.9 143 14-197 31-175 (517)
2 1w1w_A Structural maintenance 1.0 1 1 218.6 15.1 161 19-199 1-176 (430)
3 3kta_B Chromosome segregation 1.0 1 1 217.3 17.4 156 1102-1257 2-157 (173)
4 1w1w_A Structural maintenance 1.0 1 1 203.8 15.2 166 1092-1257 252-429 (430)
5 3kta_A Chromosome segregation 1.0 1 1 199.5 16.5 177 19-210 1-181 (182)
6 1e69_A Chromosome segregation 1.0 1 1 191.4 16.4 148 20-181 1-150 (322)
7 3qks_A DNA double-strand break 1.0 1 1 188.9 13.6 171 20-219 1-184 (203)
8 3l51_B Structural maintenance 1.0 1 1 184.0 15.1 158 561-721 3-161 (166)
9 3auy_A DNA double-strand break 1.0 1 1 183.3 17.1 151 19-199 2-159 (371)
10 2wd5_A Structural maintenance 1.0 1 1 176.2 6.2 171 574-755 51-225 (233)
No 1
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=235.72 Aligned_cols=143 Identities=20% Similarity=0.268 Sum_probs=109.6
Q ss_pred CCCCCC-EEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999984-3898888537533479722136777626887689998347999999981845102310012332323545788
Q 000833 14 SRKWPR-LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQN 92 (1263)
Q Consensus 14 ~~~~~~-m~i~~i~l~nFks~~~~~~~~~f~~~~~~i~G~NGsGKS~i~~ai~~~~g~~~~~~r~~~~~~~i~~g~~~~~ 92 (1263)
|+..++ |+|.+|.|.||++|.+.++ +|++|+|+|+||||||||||++||+|++|+++. .++|+.|
T Consensus 31 ~~~~~~~M~l~~L~i~nf~~~~~~~l--~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~-------~~~i~~g----- 96 (517)
T 4ad8_A 31 PDAAPTGPRLSRLEIRNLATITQLEL--ELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN-------HDLIRSG----- 96 (517)
T ss_dssp -------CCCCEEEEESBTTBSCEEE--ECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC-------GGGBCTT-----
T ss_pred CCCCCCCCEEEEEECCCCCCEEEEEE--ECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCH-------HHHHCCC-----
T ss_conf 99865566642360016166301799--538980799859998789999999987367768-------9982189-----
Q ss_pred CCCEEEEEEE-EECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 8711899987-201036887543447856899988632998208886941499999999981899988875442313498
Q 000833 93 LDSAGVSVHF-QEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVE 171 (1263)
Q Consensus 93 ~~~a~v~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~s~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~ 171 (1263)
...|+|+++| .. + .+.+++|.|.+..+|.+.|+|||.+++..++.++.... ..+++|...
T Consensus 97 ~~~a~v~~~f~~~--~---------~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~l-------i~i~~q~~~- 157 (517)
T 4ad8_A 97 EKELLVTGFWGDG--D---------ESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGR-------LTIHWQHSA- 157 (517)
T ss_dssp CSEEEEEEEC-------------------CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTT-------EEEESGGGG-
T ss_pred CCCEEEEEEEEEC--C---------CCCEEEEEEEEECCCCCEEEECCEECCHHHHHHHHHHH-------EEEECCCHH-
T ss_conf 9738999999854--8---------99769999999638883899999988799999996310-------688688517-
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98815999889995117999999740
Q 000833 172 QISLMKPKGQGPHDEGFLEYLEDIIG 197 (1263)
Q Consensus 172 ~~~~~~p~~~~~~~~~~~~~~e~~~g 197 (1263)
+....|. .++.+|+.+++
T Consensus 158 -~~l~~~~-------~rr~~LD~~~~ 175 (517)
T 4ad8_A 158 -VSLLSPA-------NQRGLLDRRVT 175 (517)
T ss_dssp -GTTTSHH-------HHHHHHHTSSH
T ss_pred -HHCCCHH-------HHHHHHHHHHC
T ss_conf -7617989-------99999998747
No 2
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=218.57 Aligned_cols=161 Identities=30% Similarity=0.530 Sum_probs=132.3
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCC-CCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCC------
Q ss_conf 4389888853753347972213677-762688768999834799999998184510231001233232354578------
Q 000833 19 RLFIKEMVMRNFKSYAGEQRVGPFH-KSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQ------ 91 (1263)
Q Consensus 19 ~m~i~~i~l~nFks~~~~~~~~~f~-~~~~~i~G~NGsGKS~i~~ai~~~~g~~~~~~r~~~~~~~i~~g~~~~------ 91 (1263)
||+|++|.+.||+||++.+.+ .|. +++++|+|||||||||+++||+|+++.+...+|+..+.++|+.|...+
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~-~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---------CGGGSCCC----------
T ss_pred CCEEEEEEEECEEEECCCEEE-EECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 971589999588998994057-7569978999999988899999999845342434401445899996488664025872
Q ss_pred --------CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf --------887118999872010368875434478568999886329982088869414999999999818999888754
Q 000833 92 --------NLDSAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRF 163 (1263)
Q Consensus 92 --------~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~s~y~in~~~~~~~~~~~~~~~~~i~~~~~~~ 163 (1263)
....++|...|.. .+..+.|.|.+.++|.+.|+|||++++.+++...+...||.++++++
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~------------~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~ 147 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQK------------GNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNF 147 (430)
T ss_dssp ---------CCEEEEEEEEEE------------TTEEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTT
T ss_pred CCCCCCCCCCCCCCCEEEECC------------CCCEEEEEEEEECCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCE
T ss_conf 266665677631111034216------------88279999999669956999999886499999999857958787200
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 423134989881599988999511799999974024
Q 000833 164 LILQGEVEQISLMKPKGQGPHDEGFLEYLEDIIGTD 199 (1263)
Q Consensus 164 ~i~qg~v~~~~~~~p~~~~~~~~~~~~~~e~~~g~~ 199 (1263)
+++||++..++.++|. +++.+|++++|+.
T Consensus 148 ~i~qg~~~~l~~~~p~-------eRr~~ld~~~g~~ 176 (430)
T 1w1w_A 148 LVFQGDVEQIAAQSPV-------ELSRMFEEVSGSI 176 (430)
T ss_dssp EECTTCTTHHHHSCHH-------HHHHTC-------
T ss_pred EEEHHHHHHHHHCCHH-------HHHHHHHHHHCCH
T ss_conf 4665759999858999-------9999999983964
No 3
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=1.00 E-value=1 Score=217.31 Aligned_cols=156 Identities=39% Similarity=0.687 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999982489617798437888443331232048886652225589368999999999985
Q 000833 1102 RKKRLDEFMAGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFAL 1181 (1263)
Q Consensus 1102 ~~~~~~~f~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSGGek~~~~lal~~a~ 1181 (1263)
+.++...|+.+|+.|+..|+.+|+.+++||.+.+.+.++.+++..|+.+.+.|+++..+.+..||||||++++||++||+
T Consensus 2 ~~~~~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l~~~~~~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~ 81 (173)
T 3kta_B 2 EKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAI 81 (173)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCSSSGGGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 27999999999999999999999985899879999607987433685699638984416330099999999999999985
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEECCCCCEEEEECCCCCC
Q ss_conf 3279999688645768999788999999999731997599987046589724426899803897203885587433
Q 000833 1182 HHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFT 1257 (1263)
Q Consensus 1182 ~~~~~~p~~ilDE~da~lD~~~~~~~~~~l~~~~~~~q~i~ith~~~~~~~ad~~~~v~~~~~~s~~~~~~~~~~~ 1257 (1263)
+.+.||||++|||||++||+.++..+.++|+++....|+|+|||++.++..||++++|++.+|+|++++++++.+.
T Consensus 82 ~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 82 QKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTEEEEEECCHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHCCEEEEEEECCCEEEEEEEECHHHH
T ss_conf 4557998999779865789999999999999866699899999368999869999999955987899999807889
No 4
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=203.82 Aligned_cols=166 Identities=41% Similarity=0.778 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCCEEEEECCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 99999999999999999999999999999999998248---------961779843788844333123204888665222
Q 000833 1092 DDVKKQYDEWRKKRLDEFMAGFNAISLKLKEMYQMITL---------GGDAELELVDSLDPFSEGVVFSVRPPKKSWKNI 1162 (1263)
Q Consensus 1092 ~~l~~~~~~l~~~~~~~f~~~~~~v~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1162 (1263)
..+...+..+...+...|..+|..++..|..+|..++. ||.+.+.+.+..+++..|+.+.+.||++..+++
T Consensus 252 ~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~ 331 (430)
T 1w1w_A 252 KKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDM 331 (430)
T ss_dssp --------------------CHHHHHHHHHHHHHHTC-----------CEEEEC------------CEEEECTTCCCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 99999999999999999999999999999999999842656776688965999956898755576699998899630333
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHCCEEEEEEE
Q ss_conf 558936899999999998532799996886457689997889999999997319-9759998704658972442689980
Q 000833 1163 ANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTK-DAQFIIISLRNNMFELADRLVGIYK 1241 (1263)
Q Consensus 1163 ~~lSGGek~~~~lal~~a~~~~~~~p~~ilDE~da~lD~~~~~~~~~~l~~~~~-~~q~i~ith~~~~~~~ad~~~~v~~ 1241 (1263)
..|||||+++++||++||...+.|||+++||||+++||+.++..+..+|..+.. +.|+|+|||++.++..||++++|++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEE
T ss_conf 14882269999999999972578998799689754489999999999999973689879999898899984788999998
Q ss_pred C--CCCCEEEEECCCCCC
Q ss_conf 3--897203885587433
Q 000833 1242 T--DNCTKSITINPGSFT 1257 (1263)
Q Consensus 1242 ~--~~~s~~~~~~~~~~~ 1257 (1263)
. .|+|+++++++.+|.
T Consensus 412 ~~~~~~s~~~~~~~~~~~ 429 (430)
T 1w1w_A 412 QQQENSSKIITLDLSNYA 429 (430)
T ss_dssp ETTTTEEEEEEEEGGGC-
T ss_pred ECCCCEEEEEEEECCCCC
T ss_conf 379982699998145679
No 5
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=1.00 E-value=1 Score=199.46 Aligned_cols=177 Identities=32% Similarity=0.556 Sum_probs=148.0
Q ss_pred CEEEEEEEECCCCCC--CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCH-HHHHHHCCCCCCCCCCC-CCCCC
Q ss_conf 438988885375334--797221367776268876899983479999999818451-02310012332323545-78887
Q 000833 19 RLFIKEMVMRNFKSY--AGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRA-KQMRLNKVSELIHNSTN-YQNLD 94 (1263)
Q Consensus 19 ~m~i~~i~l~nFks~--~~~~~~~~f~~~~~~i~G~NGsGKS~i~~ai~~~~g~~~-~~~r~~~~~~~i~~g~~-~~~~~ 94 (1263)
||+|++|.|.||++| .+..+ +|++|+++|+||||||||||++||.|++|... ...|+..+.++|+.|.. .+...
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~--~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVI--PFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAK 78 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEE--ECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCS
T ss_pred CCEEEEEEEECEEEECCCCEEE--ECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCC
T ss_conf 9568999995848653762899--65898289999999978999999999976874223454320003664666677773
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 11899987201036887543447856899988632998208886941499999999981899988875442313498988
Q 000833 95 SAGVSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQIS 174 (1263)
Q Consensus 95 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~s~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~ 174 (1263)
.+.|.++|++ ....+. .++..++|.|.+..++.+.|++||.+++.+++.+++...|+..+++. ++.||++..++
T Consensus 79 ~~~v~~~f~~----~~~~~~-~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~-~~~qg~~~~l~ 152 (182)
T 3kta_A 79 YAEVAIYFNN----EDRGFP-IDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYN-IVLQGDITKFI 152 (182)
T ss_dssp CEEEEEEEEC----TTCCSS-SSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTT-EECTTCTTHHH
T ss_pred EEEEEEEEEC----CCCCCC-CCCCEEEEEEEEEECCCEEEEECCEECCHHHHHHHHHHCCCCCCCCE-EEECCCHHHHH
T ss_conf 5999999957----876545-67868999999995895799999958689999999998599978877-99752188998
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 159998899951179999997402462789999999
Q 000833 175 LMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYK 210 (1263)
Q Consensus 175 ~~~p~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~ 210 (1263)
.++|. +++.+|+.++|+..|...++++.+
T Consensus 153 ~~~~~-------~r~~~ld~~~g~~~~~~~~~~~~~ 181 (182)
T 3kta_A 153 KMSPL-------ERRLLIDDISGIAEYDSKKEKALE 181 (182)
T ss_dssp HSCHH-------HHHHHHHHHHTC------------
T ss_pred HCCHH-------HHHHHHHHHHCHHHHHHHHHHHHC
T ss_conf 27999-------999999998785889999998741
No 6
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=191.42 Aligned_cols=148 Identities=30% Similarity=0.588 Sum_probs=125.7
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-HHHHHHHCCCCCCCCCC-CCCCCCCEE
Q ss_conf 3898888537533479722136777626887689998347999999981845-10231001233232354-578887118
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKR-AKQMRLNKVSELIHNST-NYQNLDSAG 97 (1263)
Q Consensus 20 m~i~~i~l~nFks~~~~~~~~~f~~~~~~i~G~NGsGKS~i~~ai~~~~g~~-~~~~r~~~~~~~i~~g~-~~~~~~~a~ 97 (1263)
|+|++|+|.||+||++...+ +|++|+|+|+||||||||||++||.|++|.+ ....|+....++|+.|. ..++...|+
T Consensus 1 M~l~~L~i~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~ 79 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY 79 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred CEEEEEEEECCEEECCCEEE-ECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCCEEE
T ss_conf 95759999493521697688-56999289999999967999999999868884000020258876026766788886189
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 99987201036887543447856899988632998208886941499999999981899988875442313498988159
Q 000833 98 VSVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMK 177 (1263)
Q Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~s~y~in~~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~v~~~~~~~ 177 (1263)
|+++|. + .+.++.|.|.+...+.+.|++||.+++..++...+...|+..+.+ .++.||++..++.++
T Consensus 80 v~~~f~----~--------~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~-~lv~qg~i~~~~~~~ 146 (322)
T 1e69_A 80 VELVFE----E--------NGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFY-SIVGQGQIDRIVNAS 146 (322)
T ss_dssp EEEEEE----S--------SSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCC-SEEEHHHHHHHHTC-
T ss_pred EEEEEE----E--------CCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHE-EEEEHHHHHHHHHCC
T ss_conf 999999----3--------992999999998699638999990834999999999839980460-667456499998666
Q ss_pred CCCC
Q ss_conf 9988
Q 000833 178 PKGQ 181 (1263)
Q Consensus 178 p~~~ 181 (1263)
|.++
T Consensus 147 p~~r 150 (322)
T 1e69_A 147 PEEL 150 (322)
T ss_dssp ----
T ss_pred HHHH
T ss_conf 8889
No 7
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=1.00 E-value=1 Score=188.92 Aligned_cols=171 Identities=16% Similarity=0.285 Sum_probs=133.0
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 38988885375334797221367776268876899983479999999818451023100123323235457888711899
Q 000833 20 LFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGVS 99 (1263)
Q Consensus 20 m~i~~i~l~nFks~~~~~~~~~f~~~~~~i~G~NGsGKS~i~~ai~~~~g~~~~~~r~~~~~~~i~~g~~~~~~~~a~v~ 99 (1263)
|+|++|.|.||+||.+.++ +|++|+|+|+||||||||||++||+|+||++ +..|+....++|+.| ...|+|+
T Consensus 1 M~i~~l~i~nf~~~~~~~i--~f~~~~~~I~G~NgsGKStil~ai~~~l~g~-~~~r~~~~~~~i~~~-----~~~~~v~ 72 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTVV--EFKEGINLIIGQNGSGKSSLLDAILVGLYWP-LRIKDIKKDEFTKVG-----ARDTYID 72 (203)
T ss_dssp CEEEEEEEESBTTBSSEEE--ECCSEEEEEECCTTSSHHHHHHHHHHHHHTT-SCCTTCCHHHHHTSC-----SSCEEEE
T ss_pred CEEEEEEEECCCCCCCEEE--EECCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCCCCHHHHCCC-----CCCEEEE
T ss_conf 9799999988767156299--8189818999289998899999999996498-556566612333068-----9848999
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEEEEEEECCC---CCE---EEECCC---C--CCHHHHHHHHHHCCCCCCC--CCCCCC
Q ss_conf 98720103688754344785689998863299---820---888694---1--4999999999818999888--754423
Q 000833 100 VHFQEIVDLDDGTYEAIQGSDFVISRVAFRDN---SSK---YYINDR---P--SNFTEVTKKLKGKGVDLDN--NRFLIL 166 (1263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~---~s~---y~in~~---~--~~~~~~~~~~~~~~i~~~~--~~~~i~ 166 (1263)
++|.. ++..+.|.|.+.+++ .+. |..||. + .+.+++.+.+... ++.+. .++++.
T Consensus 73 l~f~~------------~~~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~l~ 139 (203)
T 3qks_A 73 LIFEK------------DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIR 139 (203)
T ss_dssp EEEEE------------TTEEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHTTEEC
T ss_pred EEEEE------------CCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHH-CCHHHHHEEEEEC
T ss_conf 99998------------9999999999976898776535999728966550347768999999997-3987812788995
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13498988159998899951179999997402462789999999999998888
Q 000833 167 QGEVEQISLMKPKGQGPHDEGFLEYLEDIIGTDRYVEKIDESYKDYVVLFDLI 219 (1263)
Q Consensus 167 qg~v~~~~~~~p~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~ 219 (1263)
||++..++.++ . +++++|++++|+..|...++.+.+.+.+++..+
T Consensus 140 Qg~~~~~l~~~-~-------er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~ 184 (203)
T 3qks_A 140 QGQIDAILESD-E-------AREKVVREVLNLDKFETAYKKLSELKKTINNRI 184 (203)
T ss_dssp TTHHHHHHHCH-H-------HHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCC-H-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87578787493-9-------999999999797899999999999999999999
No 8
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=1.00 E-value=1 Score=184.04 Aligned_cols=158 Identities=56% Similarity=0.921 Sum_probs=134.1
Q ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 99999998741788862041444665671499999974279982987452789999999874499912698635556553
Q 000833 561 VLKAILQAKESNQIEGIYGRMGDLGAIDAKYDIAVSTACPGLDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLF 640 (1263)
Q Consensus 561 ~~~~~~~~~~~~~~~g~~g~l~~l~~~~~~~~~aie~~lg~L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~ 640 (1263)
.+..+++....+.++|++|++++++.++++|..|+++++|.++++||++..++..|+++|++.+.||+||+|++.+....
T Consensus 3 ~~~~l~~~~~~~~~~Gv~G~v~dLi~v~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~ 82 (166)
T 3l51_B 3 VLDAIIQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWA 82 (166)
T ss_dssp HHHHHHHHHHHTSSTTEEEEGGGSCBCCGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGT
T ss_pred HHHHHHHHHHHCCCCCCEEEHHHHEEECHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 89999999984899971688778030078799999999712842998879999999999987299707999886555455
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCC-CCCCCEEEEECCCEEECCCCCCCCC
Q ss_conf 233467788776222202333375358999999736968856968999998419-9875148851871250684334789
Q 000833 641 PKMKEHFSTPENVPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSG-NKEFRRVVTLDGALFEKSGTMSGGG 719 (1263)
Q Consensus 641 ~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~li~e~~e~a~~~~~~~-~~~~~~~vTldG~~~~~~G~i~gg~ 719 (1263)
.. ......+.+.++++|+|.|+++.+.+++.++||++++|+|++.|..+.+.. .+ +++||+||+++.++|+|+||+
T Consensus 83 ~~-~~~~~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~--~r~VTldGdli~~~G~~tGG~ 159 (166)
T 3l51_B 83 KK-MSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRR--WRVVTLQGQIIEQSGTMSGGL 159 (166)
T ss_dssp TS-CCCCCCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCB--CCEEETTSCEECTTCCEEECC
T ss_pred CC-CCCCCCCCCHHHHHHEEECCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCC--CEEEECCCEEEECCEEEECCC
T ss_conf 66-330226654656852040786889999999829989989999999988860899--489978988995898897888
Q ss_pred CC
Q ss_conf 99
Q 000833 720 SK 721 (1263)
Q Consensus 720 ~~ 721 (1263)
..
T Consensus 160 ~~ 161 (166)
T 3l51_B 160 EH 161 (166)
T ss_dssp GG
T ss_pred CC
T ss_conf 53
No 9
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=1.00 E-value=1 Score=183.33 Aligned_cols=151 Identities=30% Similarity=0.496 Sum_probs=111.0
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf 43898888537533479722136777626887689998347999999981845102310012332323545788871189
Q 000833 19 RLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNYQNLDSAGV 98 (1263)
Q Consensus 19 ~m~i~~i~l~nFks~~~~~~~~~f~~~~~~i~G~NGsGKS~i~~ai~~~~g~~~~~~r~~~~~~~i~~g~~~~~~~~a~v 98 (1263)
||+|.+|.|.||++|.+.++ +|++|+|+|+||||||||||+|||+|++.++ .|+....++|+.| .+.|+|
T Consensus 2 ~M~l~~L~l~nFr~~~~~~i--~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~---~r~~~~~~~ir~g-----~~~~~V 71 (371)
T 3auy_A 2 SMILKEIRMNNFKSHVNSRI--KFEKGIVAIIGENGSGKSSIFEAVFFALFGA---GSNFNYDTIITKG-----KKSVYV 71 (371)
T ss_dssp CEEEEEEEEEEETTEEEEEE--ECCSEEEEEEECTTSSHHHHHHHHHHHHHCC---C-CCCTTTTBCTT-----CSEEEE
T ss_pred CCEEEEEEEECCCCCCCEEE--ECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCCCCHHHHCCCC-----CCCEEE
T ss_conf 84786999986115366598--3699849999999998899999999998299---8755567651189-----983899
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCC--CEEEECCCCCCH--HHHHHHHHH-CCCCCCC--CCCCCCHHHHH
Q ss_conf 9987201036887543447856899988632998--208886941499--999999981-8999888--75442313498
Q 000833 99 SVHFQEIVDLDDGTYEAIQGSDFVISRVAFRDNS--SKYYINDRPSNF--TEVTKKLKG-KGVDLDN--NRFLILQGEVE 171 (1263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~--s~y~in~~~~~~--~~~~~~~~~-~~i~~~~--~~~~i~qg~v~ 171 (1263)
+++|.. .+..+.|.|. ...|. +.+++||.+++. +++...+.. .|++.+. ++.++.||++.
T Consensus 72 ~~~f~~------------~~~~~~i~r~-~~~g~~~~~~~~ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~ 138 (371)
T 3auy_A 72 ELDFEV------------NGNNYKIIRE-YDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIA 138 (371)
T ss_dssp EEEEEE------------TTEEEEEEEE-EETTEEEEEEEETTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHH
T ss_pred EEEEEE------------CCEEEEEEEE-ECCCCCCEEEEECCEEECCCHHHHHHHHHHHHCCCHHHHCCEEEECCCCHH
T ss_conf 999998------------9999999999-768998539998998611647899999999869598994743266173079
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9881599988999511799999974024
Q 000833 172 QISLMKPKGQGPHDEGFLEYLEDIIGTD 199 (1263)
Q Consensus 172 ~~~~~~p~~~~~~~~~~~~~~e~~~g~~ 199 (1263)
.++..+|. +++.+++.++|..
T Consensus 139 ~~~~~~~~-------~Rr~~ld~~~~~~ 159 (371)
T 3auy_A 139 KFLSLKPS-------EKLETVAKLLGID 159 (371)
T ss_dssp HHHHSCHH-------HHHHHHHHHHTHH
T ss_pred HHHHCCHH-------HHHHHHHHHHCHH
T ss_conf 98735989-------9999999986949
No 10
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=1.00 E-value=1 Score=176.20 Aligned_cols=171 Identities=28% Similarity=0.496 Sum_probs=129.8
Q ss_pred CCC-CEEECCCCCCC-CHHHHHHHHHHCCC-CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 886-20414446656-71499999974279-9829874527899999998744999126986355565532334677887
Q 000833 574 IEG-IYGRMGDLGAI-DAKYDIAVSTACPG-LDYIVVETTSAAQACVELLRREKLGVATFMILEKQVDLFPKMKEHFSTP 650 (1263)
Q Consensus 574 ~~g-~~g~l~~l~~~-~~~~~~aie~~lg~-L~~~vV~~~~~a~~~i~~lk~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 650 (1263)
++| ++|++++++.+ +++|..||+++||+ ++++||++..++..|+++|++...|+++|+|++.+.+... ......+
T Consensus 51 ~~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~--~~~~~~~ 128 (233)
T 2wd5_A 51 YPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPT--DEKLREL 128 (233)
T ss_dssp SGGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCCCC--CGGGGGC
T ss_pred CCCCEEEEHHHHCEECCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CHHCCCC
T ss_conf 89986666789512286899999999988865579989899999999999865999717997731366775--2110587
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCC-CCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 762222023333753589999997369688569689999984199-8751488518712506843347899989998776
Q 000833 651 ENVPRLFDLIKVKDERMKLAFYAAMGNTLVAKDLDQATRIAYSGN-KEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMGT 729 (1263)
Q Consensus 651 ~~~~~l~d~i~~~~~~~~~~~~~~~~~~li~e~~e~a~~~~~~~~-~~~~~~vTldG~~~~~~G~i~gg~~~~~~~~~~~ 729 (1263)
.++.+++|+|.|+++.+.+++.+++|++++|++++.|..+.+... + .++||++|+++.++|+|+||+.....+.
T Consensus 129 ~g~~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~--~r~VTldG~~~~~~G~~tGG~~~~~~~~--- 203 (233)
T 2wd5_A 129 KGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQR--HKTVALDGTLFQKSGVISGGASDLKAKA--- 203 (233)
T ss_dssp SSCEESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSC--CCEEETTCCEECTTSCEEECHHHHHHHT---
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCC--CEEEECCCEEEECCEEEECCCCHHHHHH---
T ss_conf 88447887651786889999999929989999999999999846998--1699569879808926868995244565---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67889888999999999999999999
Q 000833 730 SIRPTSVSAEAIINAEKELSAMVDNL 755 (1263)
Q Consensus 730 ~~~~~~~~~~~i~~l~~el~~~~~~l 755 (1263)
..|.++++..++.++..+..++
T Consensus 204 ----~~~~~~e~~~l~~~~~~l~~~~ 225 (233)
T 2wd5_A 204 ----RRWDEKAVDKLKEKKGRLTEEL 225 (233)
T ss_dssp ----THHHHHHTTTCC----------
T ss_pred ----HHCCHHHHHHHHHHHHHHHHHH
T ss_conf ----5346999999999999999999
Done!