BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000834
(1263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9
Length = 266
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 134/248 (54%), Gaps = 1/248 (0%)
Query: 389 KEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL 448
KE+++ +V+ + F+ P E I +L+ + + L +L DFK+ + L+ L +
Sbjct: 16 KEEKQLKLVK-WNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLA 74
Query: 449 PSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFL 508
+ + ++ D+LL+W L+F ++N L+KVLE + + +RD +++ E + F+
Sbjct: 75 DTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134
Query: 509 PCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFL 568
P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+ ++ +
Sbjct: 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY 194
Query: 569 IDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 628
I + G L + VA ++D +R AA+N L +K G+ +W+ G++ D K
Sbjct: 195 ITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDK 254
Query: 629 SMLDDRFK 636
S++++R K
Sbjct: 255 SLVEERIK 262
>pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215 And Eb1
Length = 242
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 2/147 (1%)
Query: 99 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DS 157
DI K LE W +R ES+E + K+L + + +++ G L L+ + DS
Sbjct: 11 DILSKXPKDFYDKLEEKKWTLRKESLEVLEKLLTD-HPKLENGEYGALVSALKKVITKDS 69
Query: 158 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 217
N LV L +A + + + +L+ + K ++ +DA A+
Sbjct: 70 NVVLVAXAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST 129
Query: 218 HLDKMVPYVTTALTDAKLGAEGRKDLF 244
L+ + +L++ + LF
Sbjct: 130 SLEAQQESIVESLSNKNPSVKSETALF 156
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 869 PSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGM 928
P W P ++ES +R ++ I T T+Y++D++ V +E G+
Sbjct: 243 PMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDCIETLYELDIE----YSQVLAKECGV 298
Query: 929 EEIRRRAGADDKPL 942
E IRR + PL
Sbjct: 299 ENIRRAESLNGNPL 312
>pdb|3O9N|A Chain A, Crystal Structure Of A New Form Of Xylanase-A-Amylase
Inhibitor Protein(Xaip-Iii) At 2.4 A Resolution
Length = 272
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 1113 APLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNER 1172
P P +S +DA + V NF LPP ++E+N G A+ + + + +
Sbjct: 76 GPAGPYSLDSRSDANDLAVYLF-NNFLLPPGHSENNPFGNAVLDGI---DFHIEHGGPSQ 131
Query: 1173 FGVTSGTLDAIRERMKSMQLAAAAG--NPDPGNRPLIN 1208
+ + + L + R + L AA PDP +IN
Sbjct: 132 YQLLANILSSFRLKGTEFALTAAPQCVYPDPNLGTVIN 169
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 867 LDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQEL 926
+ P W P ++ES +R ++ I T T+Y++D++ V +E
Sbjct: 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYS----QVLAKEC 296
Query: 927 GMEEIRRRAGADDKPL 942
G+E IRR + PL
Sbjct: 297 GVENIRRAESLNGNPL 312
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 867 LDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQEL 926
+ P W P ++ES +R ++ I T T+Y++D++ V +E
Sbjct: 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIE----YSQVLAKEC 296
Query: 927 GMEEIRRRAGADDKPL 942
G+E IRR + PL
Sbjct: 297 GVENIRRAESLNGNPL 312
>pdb|2QGS|A Chain A, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
pdb|2QGS|B Chain B, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
Length = 225
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 725 SPEQSVEGMKVVCHELAQA--TNDPEGSVMDELVKDADRLVSCLANKVAKTFDFS 777
S E S + + ++ H +A N + S+ E+V+DADRL + A +A+TF FS
Sbjct: 86 SSEISQQVLYIIKHXSYRAGKNNHVKLSIDGEIVRDADRLDAIGAIGIARTFQFS 140
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 867 LDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQEL 926
+ P W P ++ES +R ++ I T T+Y++D++ V +E
Sbjct: 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIE----YSQVLAKEC 296
Query: 927 GMEEIRRRAGADDKPL 942
G+E IRR + PL
Sbjct: 297 GVENIRRAESLNGNPL 312
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 867 LDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQEL 926
+ P W P ++ES +R ++ I T T+Y++D++ V +E
Sbjct: 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIE----YSQVLAKEC 296
Query: 927 GMEEIRRRAGADDKPL 942
G+E IRR + PL
Sbjct: 297 GVENIRRAESLNGNPL 312
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 867 LDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQEL 926
+ P W P ++ES +R ++ I T T+Y++D++ V +E
Sbjct: 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIE----YSQVLAKEC 296
Query: 927 GMEEIRRRAGADDKPL 942
G+E IRR + PL
Sbjct: 297 GVENIRRAESLNGNPL 312
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 867 LDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQEL 926
+ P W P ++ES +R ++ I T T+Y++D++ V +E
Sbjct: 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIKTLYELDIE----YSQVLAKEC 296
Query: 927 GMEEIRRRAGADDKPL 942
G+E IRR + PL
Sbjct: 297 GVENIRRAESLNGNPL 312
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 543 LPYILEGLRSKNNRTRIECVDLVGFLIDHHGA----EISGQLKSL-QIVASLTAE----R 593
LP IL+G+ +K + ++ G ++ +HG E+S + +L ++VA++ +
Sbjct: 218 LPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYM 277
Query: 594 DGEIRKA--ALNTLATGYK--ILGEDI-WRYVGKLTDAQKSMLD 632
DG +R L LA G + LG I W K D K +LD
Sbjct: 278 DGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLD 321
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 543 LPYILEGLRSKNNRTRIECVDLVGFLIDHHGA----EISGQLKSL-QIVASLTAE----R 593
LP IL+G+ +K + ++ G ++ +HG E+S + +L ++VA++ +
Sbjct: 218 LPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYM 277
Query: 594 DGEIRKA--ALNTLATGYK--ILGEDI-WRYVGKLTDAQKSMLD 632
DG +R L LA G + LG I W K D K +LD
Sbjct: 278 DGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLD 321
>pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SO2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With A Dihydropyridazine Inhibitor
pdb|1SOJ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|C Chain C, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|D Chain D, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|E Chain E, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|F Chain F, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|G Chain G, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|H Chain H, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|J Chain J, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|K Chain K, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|L Chain L, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
pdb|1SOJ|I Chain I, Catalytic Domain Of Human Phosphodiesterase 3b In Complex
With Ibmx
Length = 420
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 5/171 (2%)
Query: 379 QALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQV 438
QA+L S E+ P + L++ K FR + +L+TD KK
Sbjct: 187 QAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHF 246
Query: 439 DGLEMLQKALPSIRKDIIEVLDILLRWFVLQFC--KSNTTCLLKVLEFLPELFDTLRDEG 496
D L + + IE + R V Q C ++ KV + + + + +E
Sbjct: 247 DFLAEFNAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEF 306
Query: 497 YSLTESEAAVFLPC--LVEKSGHNIEKVREK-MRELTKQIVNFYSATKTLP 544
Y + EA + LP +++S + K++E + + + N Y A LP
Sbjct: 307 YEQGDEEANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLP 357
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 481 VLEFLP--ELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 517
V+E++ ELFD + DE Y+LTE + +F+ + E H
Sbjct: 164 VMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRH 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,527,096
Number of Sequences: 62578
Number of extensions: 1224313
Number of successful extensions: 3193
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3174
Number of HSP's gapped (non-prelim): 35
length of query: 1263
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1153
effective length of database: 8,089,757
effective search space: 9327489821
effective search space used: 9327489821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)