Query 000834
Match_columns 1263
No_of_seqs 291 out of 814
Neff 6.8
Searched_HMMs 46136
Date Tue Apr 2 00:17:06 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 3.9E-51 8.4E-56 505.5 32.2 626 3-639 114-792 (815)
2 KOG1820 Microtubule-associated 100.0 4.8E-31 1E-35 327.4 35.0 747 111-955 13-814 (815)
3 PF12348 CLASP_N: CLASP N term 99.8 1E-18 2.2E-23 193.0 15.8 206 102-310 6-224 (228)
4 PF12348 CLASP_N: CLASP N term 99.8 3.3E-18 7.1E-23 189.0 18.7 205 424-632 11-228 (228)
5 KOG2171 Karyopherin (importin) 99.2 2.8E-07 6E-12 116.8 41.5 206 95-302 340-560 (1075)
6 KOG1242 Protein containing ada 99.2 5.1E-09 1.1E-13 125.5 25.0 195 106-305 137-338 (569)
7 KOG0212 Uncharacterized conser 99.0 1.4E-07 2.9E-12 111.2 27.7 380 105-550 2-459 (675)
8 KOG1824 TATA-binding protein-i 98.9 1E-05 2.2E-10 100.1 37.1 194 107-303 9-215 (1233)
9 KOG2023 Nuclear transport rece 98.8 1E-05 2.2E-10 97.1 33.7 422 108-621 220-743 (885)
10 KOG2171 Karyopherin (importin) 98.8 1.7E-05 3.7E-10 101.1 37.1 444 104-615 80-554 (1075)
11 KOG2956 CLIP-associating prote 98.8 6.5E-06 1.4E-10 96.0 29.9 207 425-640 291-508 (516)
12 KOG0213 Splicing factor 3b, su 98.5 0.00052 1.1E-08 83.5 36.3 423 108-629 515-975 (1172)
13 KOG2933 Uncharacterized conser 98.5 9.2E-07 2E-11 98.5 12.2 180 107-289 92-275 (334)
14 KOG2956 CLIP-associating prote 98.5 3.6E-06 7.9E-11 98.0 16.4 205 105-313 288-499 (516)
15 KOG1242 Protein containing ada 98.4 0.00021 4.5E-09 86.7 31.7 410 113-617 27-451 (569)
16 KOG1824 TATA-binding protein-i 98.3 0.0027 5.9E-08 79.5 37.0 511 7-608 45-636 (1233)
17 PF01602 Adaptin_N: Adaptin N 98.2 0.0023 4.9E-08 79.7 35.1 434 7-608 77-522 (526)
18 KOG2023 Nuclear transport rece 98.2 0.00028 6E-09 85.2 24.3 274 11-307 15-302 (885)
19 PF01602 Adaptin_N: Adaptin N 98.2 0.002 4.2E-08 80.3 33.2 175 423-614 270-448 (526)
20 PRK13800 putative oxidoreducta 98.1 0.00058 1.3E-08 90.5 29.1 85 511-607 812-896 (897)
21 PTZ00429 beta-adaptin; Provisi 98.1 0.044 9.6E-07 70.6 42.7 176 107-294 36-211 (746)
22 COG5181 HSH155 U2 snRNP splice 98.1 0.00087 1.9E-08 80.2 24.9 134 156-296 257-392 (975)
23 KOG0213 Splicing factor 3b, su 98.0 0.02 4.4E-07 70.3 36.1 263 14-307 679-971 (1172)
24 KOG0212 Uncharacterized conser 98.0 0.016 3.4E-07 69.7 32.4 111 505-615 207-326 (675)
25 PRK13800 putative oxidoreducta 97.9 0.00035 7.6E-09 92.5 21.2 244 7-289 619-865 (897)
26 PRK09687 putative lyase; Provi 97.9 0.00083 1.8E-08 77.0 21.1 222 11-289 25-248 (280)
27 PRK09687 putative lyase; Provi 97.9 0.00087 1.9E-08 76.8 20.6 219 8-288 53-279 (280)
28 KOG0211 Protein phosphatase 2A 97.7 0.022 4.8E-07 72.7 30.4 399 153-609 245-663 (759)
29 KOG2933 Uncharacterized conser 97.6 0.001 2.2E-08 74.9 14.2 178 425-606 93-273 (334)
30 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.00067 1.5E-08 65.2 11.1 56 162-217 3-58 (97)
31 PLN03200 cellulose synthase-in 97.5 0.09 1.9E-06 73.3 34.4 417 111-609 412-859 (2102)
32 PTZ00429 beta-adaptin; Provisi 97.5 0.54 1.2E-05 60.9 38.3 181 106-293 143-328 (746)
33 KOG1241 Karyopherin (importin) 97.4 0.83 1.8E-05 57.4 38.4 433 115-622 338-823 (859)
34 KOG1241 Karyopherin (importin) 97.2 0.33 7.1E-06 60.8 30.8 416 110-621 224-679 (859)
35 KOG0915 Uncharacterized conser 97.0 0.26 5.6E-06 65.6 28.7 188 115-306 969-1174(1702)
36 PF05004 IFRD: Interferon-rela 96.6 0.061 1.3E-06 62.7 17.1 184 107-294 47-260 (309)
37 PLN03200 cellulose synthase-in 96.5 2 4.4E-05 60.7 32.9 249 11-292 406-681 (2102)
38 KOG0915 Uncharacterized conser 96.5 0.39 8.4E-06 64.1 24.3 128 161-290 973-1109(1702)
39 KOG1060 Vesicle coat complex A 96.4 1.7 3.7E-05 54.9 28.2 351 148-614 38-425 (968)
40 KOG0166 Karyopherin (importin) 96.4 0.44 9.5E-06 58.3 23.0 366 105-517 68-458 (514)
41 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.017 3.6E-07 55.6 8.2 94 119-214 2-95 (97)
42 COG5181 HSH155 U2 snRNP splice 96.1 0.22 4.9E-06 60.5 18.1 247 10-290 605-869 (975)
43 KOG1248 Uncharacterized conser 95.7 0.25 5.4E-06 64.6 17.3 201 107-318 701-921 (1176)
44 cd00020 ARM Armadillo/beta-cat 95.7 0.022 4.9E-07 55.4 6.5 107 107-214 11-119 (120)
45 KOG0211 Protein phosphatase 2A 95.6 0.26 5.6E-06 63.4 17.0 180 108-296 484-669 (759)
46 KOG2032 Uncharacterized conser 95.6 0.087 1.9E-06 63.0 11.4 190 108-303 222-428 (533)
47 PF12717 Cnd1: non-SMC mitotic 95.5 0.35 7.6E-06 51.8 15.1 130 116-253 1-140 (178)
48 PF13646 HEAT_2: HEAT repeats; 95.5 0.05 1.1E-06 50.5 7.6 86 508-606 1-88 (88)
49 KOG1060 Vesicle coat complex A 95.4 12 0.00025 47.9 30.4 183 106-306 38-230 (968)
50 cd03568 VHS_STAM VHS domain fa 95.3 0.22 4.8E-06 51.5 12.3 98 112-218 13-113 (144)
51 PF13646 HEAT_2: HEAT repeats; 95.3 0.12 2.6E-06 47.9 9.4 86 188-287 1-88 (88)
52 KOG1058 Vesicle coat complex C 95.3 4.8 0.0001 50.8 25.0 109 423-538 320-428 (948)
53 PF12717 Cnd1: non-SMC mitotic 95.2 0.15 3.2E-06 54.6 11.1 98 520-619 2-102 (178)
54 KOG1059 Vesicle coat complex A 95.2 6.3 0.00014 49.7 25.5 281 109-490 78-365 (877)
55 PF10508 Proteasom_PSMB: Prote 95.1 13 0.00029 46.5 33.5 371 143-611 75-463 (503)
56 PF02985 HEAT: HEAT repeat; I 95.1 0.036 7.8E-07 41.7 4.2 30 264-293 2-31 (31)
57 cd03567 VHS_GGA VHS domain fam 95.0 0.35 7.7E-06 49.7 12.5 98 112-218 14-119 (139)
58 PF10274 ParcG: Parkin co-regu 94.9 0.13 2.8E-06 54.9 9.3 115 106-221 41-170 (183)
59 cd00197 VHS_ENTH_ANTH VHS, ENT 94.6 0.32 7E-06 48.1 10.9 97 113-214 10-114 (115)
60 COG1413 FOG: HEAT repeat [Ener 94.4 4.8 0.0001 47.3 22.0 147 115-294 161-307 (335)
61 PF00790 VHS: VHS domain; Int 94.4 0.15 3.3E-06 52.4 8.3 100 111-219 17-122 (140)
62 PF14500 MMS19_N: Dos2-interac 94.2 4.6 0.0001 46.1 20.4 192 108-306 47-252 (262)
63 PF13251 DUF4042: Domain of un 94.2 0.36 7.8E-06 51.9 10.8 133 160-293 1-176 (182)
64 PF04118 Dopey_N: Dopey, N-ter 94.0 0.91 2E-05 52.8 14.4 163 119-288 71-251 (307)
65 PF13513 HEAT_EZ: HEAT-like re 93.8 0.056 1.2E-06 46.0 3.2 53 160-212 2-54 (55)
66 PF12460 MMS19_C: RNAPII trans 93.8 1.3 2.7E-05 54.1 15.9 183 113-303 200-405 (415)
67 KOG1240 Protein kinase contain 93.5 6.1 0.00013 52.4 21.3 138 471-614 588-729 (1431)
68 KOG1248 Uncharacterized conser 93.4 1.6 3.5E-05 57.4 16.4 183 116-302 667-867 (1176)
69 smart00288 VHS Domain present 93.4 0.8 1.7E-05 46.7 11.2 98 112-218 13-114 (133)
70 cd03561 VHS VHS domain family; 93.3 0.96 2.1E-05 46.1 11.6 99 112-219 13-116 (133)
71 cd03569 VHS_Hrs_Vps27p VHS dom 93.1 1.2 2.6E-05 46.1 12.1 99 112-219 17-118 (142)
72 PF05004 IFRD: Interferon-rela 92.9 3.5 7.7E-05 48.2 17.2 203 425-638 48-281 (309)
73 KOG1240 Protein kinase contain 92.8 1.8 3.9E-05 57.0 15.4 190 99-292 458-686 (1431)
74 TIGR02270 conserved hypothetic 92.7 1 2.3E-05 54.5 12.7 89 188-291 88-176 (410)
75 COG1413 FOG: HEAT repeat [Ener 92.7 3.5 7.6E-05 48.4 17.0 155 106-293 46-211 (335)
76 KOG4524 Uncharacterized conser 92.6 16 0.00035 47.7 23.0 65 156-220 557-623 (1014)
77 cd00020 ARM Armadillo/beta-cat 92.6 0.74 1.6E-05 44.6 9.4 100 146-247 8-115 (120)
78 KOG1020 Sister chromatid cohes 92.5 57 0.0012 44.9 32.3 116 175-294 805-924 (1692)
79 TIGR02270 conserved hypothetic 92.4 11 0.00023 46.0 20.7 225 8-306 53-279 (410)
80 KOG1087 Cytosolic sorting prot 92.4 0.59 1.3E-05 57.0 9.9 101 109-218 11-115 (470)
81 KOG2259 Uncharacterized conser 92.3 8.8 0.00019 48.0 19.5 261 186-532 198-472 (823)
82 PF12460 MMS19_C: RNAPII trans 92.3 3.8 8.3E-05 49.9 17.0 183 431-621 201-405 (415)
83 PF04118 Dopey_N: Dopey, N-ter 92.0 1.9 4.1E-05 50.2 13.1 149 114-300 22-176 (307)
84 cd03565 VHS_Tom1 VHS domain fa 92.0 1.7 3.6E-05 44.9 11.4 98 112-218 14-118 (141)
85 KOG2259 Uncharacterized conser 91.5 2.5 5.3E-05 52.6 13.7 135 107-254 377-513 (823)
86 KOG1059 Vesicle coat complex A 91.2 3.5 7.5E-05 51.8 14.6 167 6-181 33-217 (877)
87 KOG0392 SNF2 family DNA-depend 90.8 2.7 5.9E-05 55.5 13.8 174 118-297 748-931 (1549)
88 KOG1525 Sister chromatid cohes 90.8 4.5 9.7E-05 55.0 16.4 212 421-640 260-490 (1266)
89 COG5096 Vesicle coat complex, 90.6 4.9 0.00011 51.8 15.8 168 112-292 28-196 (757)
90 PF02985 HEAT: HEAT repeat; I 89.8 0.6 1.3E-05 35.0 4.3 31 187-217 1-31 (31)
91 COG5096 Vesicle coat complex, 89.8 6.7 0.00015 50.6 16.0 165 429-611 28-196 (757)
92 KOG1020 Sister chromatid cohes 89.3 6.3 0.00014 53.3 15.5 133 154-290 825-959 (1692)
93 KOG1967 DNA repair/transcripti 88.8 1.2 2.7E-05 57.0 8.5 122 95-217 898-1026(1030)
94 cd03572 ENTH_epsin_related ENT 88.7 2.3 5E-05 42.8 8.7 101 111-216 9-120 (122)
95 PF13513 HEAT_EZ: HEAT-like re 88.6 0.24 5.2E-06 42.0 1.6 54 555-608 1-55 (55)
96 KOG1062 Vesicle coat complex A 88.3 20 0.00044 45.9 18.2 198 105-308 144-400 (866)
97 PF13251 DUF4042: Domain of un 88.1 2.3 5E-05 45.8 8.9 152 435-610 1-174 (182)
98 KOG1078 Vesicle coat complex C 88.1 94 0.002 40.2 29.9 69 537-609 462-531 (865)
99 PF13001 Ecm29: Proteasome sta 88.0 83 0.0018 39.5 25.4 117 177-294 14-137 (501)
100 PF10508 Proteasom_PSMB: Prote 87.1 18 0.00039 45.3 17.5 189 425-621 43-240 (503)
101 KOG2025 Chromosome condensatio 87.0 10 0.00022 47.8 14.4 195 97-306 79-274 (892)
102 PF10274 ParcG: Parkin co-regu 84.9 6.7 0.00014 42.2 10.3 113 186-300 38-173 (183)
103 KOG2149 Uncharacterized conser 84.9 3.3 7.1E-05 49.2 8.6 112 106-218 61-173 (393)
104 PF11640 TAN: Telomere-length 84.4 8.3 0.00018 40.4 10.7 46 107-152 8-55 (155)
105 PF12231 Rif1_N: Rap1-interact 83.9 21 0.00045 43.0 15.3 136 157-293 146-305 (372)
106 COG5218 YCG1 Chromosome conden 83.7 89 0.0019 39.1 19.7 196 424-636 95-293 (885)
107 cd03567 VHS_GGA VHS domain fam 83.7 17 0.00036 37.6 12.2 103 425-538 10-119 (139)
108 cd03568 VHS_STAM VHS domain fa 83.4 11 0.00024 39.1 10.9 109 426-545 10-120 (144)
109 COG5215 KAP95 Karyopherin (imp 83.1 1.3E+02 0.0029 37.5 31.9 387 153-631 271-689 (858)
110 KOG0803 Predicted E3 ubiquitin 82.7 11 0.00024 51.6 13.2 186 107-296 45-268 (1312)
111 KOG2025 Chromosome condensatio 82.5 39 0.00085 43.0 16.6 196 424-636 89-291 (892)
112 COG5218 YCG1 Chromosome conden 82.5 25 0.00055 43.6 14.6 191 106-311 94-286 (885)
113 KOG0166 Karyopherin (importin) 82.2 8.7 0.00019 47.4 11.1 179 108-290 199-392 (514)
114 KOG2199 Signal transducing ada 82.0 12 0.00026 44.1 11.4 75 143-217 43-120 (462)
115 KOG2011 Sister chromatid cohes 81.9 9.9 0.00021 50.5 12.0 82 408-491 275-356 (1048)
116 KOG1061 Vesicle coat complex A 81.6 1.8E+02 0.0038 37.8 29.7 435 107-626 17-472 (734)
117 KOG1967 DNA repair/transcripti 81.4 6.1 0.00013 51.1 9.5 139 104-246 868-1018(1030)
118 KOG1062 Vesicle coat complex A 81.2 1.3E+02 0.0029 39.0 20.7 122 512-636 258-410 (866)
119 PF10363 DUF2435: Protein of u 80.8 9.2 0.0002 36.6 8.5 84 107-199 7-90 (92)
120 KOG1061 Vesicle coat complex A 80.8 9.4 0.0002 48.6 10.9 175 107-294 90-271 (734)
121 PF10363 DUF2435: Protein of u 79.9 7.6 0.00017 37.1 7.6 77 542-618 4-80 (92)
122 KOG0803 Predicted E3 ubiquitin 79.0 59 0.0013 44.9 18.0 182 424-610 45-263 (1312)
123 PF14500 MMS19_N: Dos2-interac 78.8 1.3E+02 0.0028 34.5 19.7 143 425-574 4-157 (262)
124 KOG2149 Uncharacterized conser 78.7 14 0.00031 44.0 10.8 109 146-256 59-174 (393)
125 PF12719 Cnd3: Nuclear condens 78.6 26 0.00057 40.6 13.3 126 480-608 2-141 (298)
126 PF12830 Nipped-B_C: Sister ch 78.1 7.1 0.00015 42.2 7.8 72 540-614 7-78 (187)
127 COG5064 SRP1 Karyopherin (impo 77.7 86 0.0019 36.7 16.1 184 413-606 65-268 (526)
128 KOG1243 Protein kinase [Genera 77.3 6.1 0.00013 49.9 7.7 191 95-294 322-518 (690)
129 PF08161 NUC173: NUC173 domain 77.2 7 0.00015 42.7 7.4 114 159-273 14-127 (198)
130 COG5240 SEC21 Vesicle coat com 77.2 27 0.00059 43.2 12.6 26 107-132 307-332 (898)
131 PF12231 Rif1_N: Rap1-interact 77.1 62 0.0013 39.0 16.1 179 112-295 2-208 (372)
132 PF12074 DUF3554: Domain of un 75.5 39 0.00085 39.9 13.8 69 144-215 21-90 (339)
133 KOG1243 Protein kinase [Genera 75.4 27 0.00058 44.4 12.4 104 505-609 329-436 (690)
134 PF00790 VHS: VHS domain; Int 74.9 44 0.00095 34.3 12.2 112 425-547 14-130 (140)
135 KOG2160 Armadillo/beta-catenin 73.3 1.1E+02 0.0025 36.1 16.2 176 113-292 93-283 (342)
136 PF08167 RIX1: rRNA processing 71.3 69 0.0015 33.9 13.0 68 424-491 29-98 (165)
137 cd03561 VHS VHS domain family; 71.2 54 0.0012 33.4 11.7 102 428-540 12-117 (133)
138 PF12719 Cnd3: Nuclear condens 71.0 65 0.0014 37.4 13.9 126 165-292 3-144 (298)
139 KOG2032 Uncharacterized conser 70.9 42 0.00092 41.1 12.2 128 167-295 236-375 (533)
140 smart00288 VHS Domain present 70.5 34 0.00074 34.9 10.1 109 427-546 11-122 (133)
141 PF05536 Neurochondrin: Neuroc 70.1 1.1E+02 0.0025 38.7 16.6 152 143-298 96-268 (543)
142 PF04826 Arm_2: Armadillo-like 68.6 42 0.00092 38.2 11.3 169 107-281 58-252 (254)
143 KOG1077 Vesicle coat complex A 68.3 80 0.0017 40.3 14.0 169 144-313 208-424 (938)
144 KOG4653 Uncharacterized conser 67.2 75 0.0016 41.5 13.7 179 430-619 737-927 (982)
145 cd03569 VHS_Hrs_Vps27p VHS dom 67.2 61 0.0013 33.6 11.2 103 427-540 15-119 (142)
146 KOG0414 Chromosome condensatio 65.9 43 0.00093 44.9 11.7 71 542-612 360-430 (1251)
147 KOG2549 Transcription initiati 64.6 1.3E+02 0.0028 37.5 14.7 178 108-295 212-419 (576)
148 cd08050 TAF6 TATA Binding Prot 64.4 87 0.0019 37.3 13.4 98 111-218 186-300 (343)
149 KOG3961 Uncharacterized conser 64.0 33 0.00072 37.6 8.6 92 98-191 110-204 (262)
150 KOG4653 Uncharacterized conser 63.7 1.1E+02 0.0024 40.0 14.3 181 107-300 731-926 (982)
151 cd03565 VHS_Tom1 VHS domain fa 63.4 87 0.0019 32.4 11.5 110 426-546 11-126 (141)
152 KOG4535 HEAT and armadillo rep 63.4 31 0.00066 41.9 8.9 114 467-608 53-177 (728)
153 PF08167 RIX1: rRNA processing 62.8 31 0.00068 36.5 8.4 111 103-216 25-144 (165)
154 PF12765 Cohesin_HEAT: HEAT re 62.7 9 0.0002 31.1 3.2 25 581-605 18-42 (42)
155 KOG1058 Vesicle coat complex C 61.2 46 0.00099 42.7 10.2 125 103-257 317-448 (948)
156 PF12765 Cohesin_HEAT: HEAT re 61.0 12 0.00027 30.3 3.8 26 261-286 17-42 (42)
157 KOG1077 Vesicle coat complex A 61.0 1.1E+02 0.0023 39.3 13.1 97 144-244 328-425 (938)
158 PF11698 V-ATPase_H_C: V-ATPas 60.8 20 0.00043 36.0 5.9 59 551-609 54-114 (119)
159 PLN03076 ARF guanine nucleotid 60.6 2.9E+02 0.0063 40.0 19.0 202 113-318 1147-1403(1780)
160 cd00197 VHS_ENTH_ANTH VHS, ENT 60.5 64 0.0014 31.7 9.6 93 429-532 13-112 (115)
161 COG5095 TAF6 Transcription ini 60.1 39 0.00085 38.8 8.6 98 195-295 207-320 (450)
162 KOG1837 Uncharacterized conser 59.7 1.9E+02 0.0041 40.4 16.0 79 542-620 1539-1621(1621)
163 cd00256 VATPase_H VATPase_H, r 58.6 29 0.00063 42.4 8.0 67 543-609 355-424 (429)
164 KOG1078 Vesicle coat complex C 58.3 46 0.001 42.8 9.7 135 479-620 38-174 (865)
165 KOG1525 Sister chromatid cohes 57.6 1.7E+02 0.0037 40.6 15.5 152 455-614 179-333 (1266)
166 KOG2137 Protein kinase [Signal 57.1 77 0.0017 40.6 11.4 169 115-294 285-461 (700)
167 PF04826 Arm_2: Armadillo-like 56.8 1E+02 0.0022 35.2 11.6 131 157-290 25-162 (254)
168 PF05918 API5: Apoptosis inhib 56.8 1.3E+02 0.0027 38.2 13.2 123 144-273 58-189 (556)
169 PF08569 Mo25: Mo25-like; Int 56.5 1.1E+02 0.0024 36.3 12.2 200 400-608 55-281 (335)
170 PF14225 MOR2-PAG1_C: Cell mor 55.6 3.7E+02 0.008 30.9 18.7 131 504-638 109-256 (262)
171 cd03572 ENTH_epsin_related ENT 54.7 24 0.00053 35.6 5.5 19 592-610 101-119 (122)
172 COG5098 Chromosome condensatio 54.5 1.2E+02 0.0026 38.7 12.1 104 194-299 307-423 (1128)
173 PF12783 Sec7_N: Guanine nucle 54.4 66 0.0014 33.9 9.1 101 115-215 34-146 (168)
174 KOG1949 Uncharacterized conser 52.9 75 0.0016 40.5 10.1 136 154-290 183-330 (1005)
175 PF11640 TAN: Telomere-length 52.8 2E+02 0.0044 30.0 12.3 45 424-468 8-59 (155)
176 KOG2199 Signal transducing ada 51.2 1.2E+02 0.0027 36.2 11.0 84 171-256 31-122 (462)
177 COG5098 Chromosome condensatio 50.8 77 0.0017 40.3 9.7 69 542-610 347-415 (1128)
178 COG5064 SRP1 Karyopherin (impo 50.7 1.6E+02 0.0034 34.7 11.5 183 106-290 74-271 (526)
179 PF08064 UME: UME (NUC010) dom 49.9 1.3E+02 0.0028 29.6 9.6 77 146-224 12-92 (107)
180 KOG4535 HEAT and armadillo rep 48.9 1.1E+02 0.0024 37.5 10.2 106 113-218 6-139 (728)
181 KOG4825 Component of synaptic 48.4 4.3E+02 0.0093 32.3 14.8 186 421-610 394-597 (666)
182 PF08623 TIP120: TATA-binding 48.4 2.2E+02 0.0048 30.5 11.7 75 117-195 41-115 (169)
183 KOG0414 Chromosome condensatio 47.5 9.4E+02 0.02 33.2 31.0 198 97-296 190-433 (1251)
184 KOG0168 Putative ubiquitin fus 47.3 4.2E+02 0.009 35.1 15.4 90 424-516 171-264 (1051)
185 COG5095 TAF6 Transcription ini 46.4 3.6E+02 0.0078 31.4 13.3 110 417-539 195-320 (450)
186 KOG0413 Uncharacterized conser 46.0 3E+02 0.0064 36.8 13.9 178 108-290 477-684 (1529)
187 PF00514 Arm: Armadillo/beta-c 45.2 28 0.0006 27.6 3.4 29 9-37 12-40 (41)
188 KOG4524 Uncharacterized conser 45.1 97 0.0021 41.0 9.8 80 151-230 809-898 (1014)
189 PF08506 Cse1: Cse1; InterPro 44.1 1.3E+02 0.0029 36.1 10.5 126 160-286 226-370 (370)
190 PF00514 Arm: Armadillo/beta-c 44.0 35 0.00075 27.0 3.8 29 262-290 12-40 (41)
191 KOG2137 Protein kinase [Signal 44.0 2.8E+02 0.0061 35.9 13.3 145 145-292 349-497 (700)
192 COG3682 Predicted transcriptio 43.5 28 0.0006 35.1 3.8 42 891-955 10-51 (123)
193 KOG2011 Sister chromatid cohes 43.2 1.2E+02 0.0026 40.8 10.5 128 152-287 294-431 (1048)
194 COG5240 SEC21 Vesicle coat com 41.2 4.7E+02 0.01 33.1 14.0 85 138-227 296-381 (898)
195 KOG1949 Uncharacterized conser 40.9 1E+02 0.0022 39.4 8.8 106 107-214 224-330 (1005)
196 smart00802 UME Domain in UVSB 40.6 1.6E+02 0.0035 29.1 8.6 75 145-221 11-89 (107)
197 PF05804 KAP: Kinesin-associat 40.5 3.5E+02 0.0075 35.6 13.9 133 158-292 504-650 (708)
198 KOG1943 Beta-tubulin folding c 40.3 1.1E+03 0.025 32.1 28.6 144 146-295 342-504 (1133)
199 KOG0392 SNF2 family DNA-depend 40.1 2.9E+02 0.0062 38.0 12.9 111 504-615 814-930 (1549)
200 PF12830 Nipped-B_C: Sister ch 39.7 1.1E+02 0.0023 33.2 8.0 110 504-613 6-122 (187)
201 PF12530 DUF3730: Protein of u 39.0 5.9E+02 0.013 28.5 14.1 78 166-248 105-185 (234)
202 PF11698 V-ATPase_H_C: V-ATPas 38.5 2.5E+02 0.0053 28.4 9.5 78 136-215 35-115 (119)
203 PF10521 DUF2454: Protein of u 37.4 2.2E+02 0.0047 32.9 10.6 162 113-275 85-278 (282)
204 PF03965 Penicillinase_R: Peni 36.8 34 0.00075 33.8 3.4 42 890-954 6-47 (115)
205 KOG2753 Uncharacterized conser 36.7 7.9E+02 0.017 29.2 16.6 96 197-292 117-217 (378)
206 KOG2286 Exocyst complex subuni 36.2 1.1E+03 0.024 30.8 17.9 96 542-639 545-651 (667)
207 KOG0168 Putative ubiquitin fus 35.0 1.3E+03 0.027 31.0 17.4 178 107-290 171-363 (1051)
208 KOG4199 Uncharacterized conser 35.0 7.6E+02 0.016 29.5 13.8 38 265-302 286-324 (461)
209 PF08623 TIP120: TATA-binding 34.1 1.4E+02 0.0031 31.9 7.6 69 236-306 40-108 (169)
210 KOG2753 Uncharacterized conser 33.8 7.4E+02 0.016 29.4 13.5 140 480-626 81-232 (378)
211 KOG1087 Cytosolic sorting prot 33.7 2.2E+02 0.0047 35.5 10.1 62 421-490 6-67 (470)
212 PF08767 CRM1_C: CRM1 C termin 33.1 3.7E+02 0.008 31.7 11.7 120 486-614 74-198 (319)
213 cd08050 TAF6 TATA Binding Prot 33.0 7.4E+02 0.016 29.5 14.3 107 425-540 183-302 (343)
214 PF14228 MOR2-PAG1_mid: Cell m 32.7 7.6E+02 0.017 34.3 15.7 84 438-535 488-572 (1120)
215 PF08161 NUC173: NUC173 domain 32.2 1.3E+02 0.0028 33.0 7.2 68 548-615 7-75 (198)
216 KOG4413 26S proteasome regulat 31.5 9.4E+02 0.02 28.5 14.7 171 420-596 82-272 (524)
217 PF14664 RICTOR_N: Rapamycin-i 31.2 1E+03 0.022 28.8 16.9 171 115-290 80-268 (371)
218 PF01417 ENTH: ENTH domain; I 30.4 2.4E+02 0.0052 28.2 8.3 100 109-214 9-120 (125)
219 PF12422 Condensin2nSMC: Conde 30.1 2.3E+02 0.0049 29.7 8.3 120 157-290 26-147 (152)
220 PF11865 DUF3385: Domain of un 30.0 1.8E+02 0.0039 30.7 7.6 51 165-215 107-157 (160)
221 PF13001 Ecm29: Proteasome sta 29.8 1.5E+02 0.0033 37.2 8.2 144 109-254 325-490 (501)
222 PF11707 Npa1: Ribosome 60S bi 29.6 6.3E+02 0.014 29.8 13.0 91 522-617 42-150 (330)
223 PF04388 Hamartin: Hamartin pr 29.5 1.3E+02 0.0028 39.2 7.7 76 542-619 71-149 (668)
224 PF03378 CAS_CSE1: CAS/CSE pro 29.0 5.6E+02 0.012 31.6 12.7 148 164-317 136-298 (435)
225 PF10521 DUF2454: Protein of u 28.9 5.3E+02 0.012 29.7 11.9 138 94-231 107-275 (282)
226 PF14664 RICTOR_N: Rapamycin-i 28.9 9.5E+02 0.021 29.0 14.4 125 505-632 24-158 (371)
227 PF12074 DUF3554: Domain of un 28.5 2.5E+02 0.0055 33.1 9.5 55 196-252 33-90 (339)
228 KOG4224 Armadillo repeat prote 28.2 4E+02 0.0087 31.9 10.3 187 103-294 251-449 (550)
229 PF11864 DUF3384: Domain of un 28.2 9.8E+02 0.021 29.7 14.8 82 431-515 81-185 (464)
230 PF05527 DUF758: Domain of unk 28.1 7.6E+02 0.016 27.0 11.8 98 454-573 34-135 (186)
231 PF12783 Sec7_N: Guanine nucle 28.0 3.6E+02 0.0077 28.4 9.6 80 432-515 34-123 (168)
232 KOG2842 Interferon-related pro 27.9 4.4E+02 0.0096 31.8 10.7 94 110-204 67-164 (427)
233 KOG2759 Vacuolar H+-ATPase V1 27.7 1.2E+03 0.026 28.6 14.3 66 543-608 368-436 (442)
234 PF08389 Xpo1: Exportin 1-like 27.3 99 0.0021 31.1 5.1 63 541-605 82-148 (148)
235 smart00185 ARM Armadillo/beta- 27.1 67 0.0014 24.7 2.9 27 10-36 13-39 (41)
236 PF14911 MMS22L_C: S-phase gen 27.1 3.8E+02 0.0082 32.4 10.3 81 482-575 232-315 (373)
237 KOG4199 Uncharacterized conser 26.6 1.2E+03 0.025 28.0 17.0 39 582-620 284-324 (461)
238 PF05918 API5: Apoptosis inhib 26.4 3.6E+02 0.0077 34.3 10.4 130 158-298 35-169 (556)
239 smart00638 LPD_N Lipoprotein N 26.1 1.2E+03 0.027 29.5 15.7 50 552-607 491-542 (574)
240 PF12333 Ipi1_N: Rix1 complex 26.0 3.3E+02 0.0071 26.5 8.1 42 179-220 4-45 (102)
241 PF04388 Hamartin: Hamartin pr 26.0 6.1E+02 0.013 33.2 12.8 142 143-305 6-153 (668)
242 PF12397 U3snoRNP10: U3 small 25.2 1.8E+02 0.0039 28.9 6.3 67 541-610 6-74 (121)
243 COG5231 VMA13 Vacuolar H+-ATPa 25.1 1.2E+03 0.026 27.7 17.2 25 584-608 402-426 (432)
244 KOG1991 Nuclear transport rece 24.9 5.7E+02 0.012 34.4 11.9 159 21-195 16-184 (1010)
245 PF01603 B56: Protein phosphat 24.9 3.4E+02 0.0074 33.2 9.8 122 432-559 267-392 (409)
246 KOG2160 Armadillo/beta-catenin 24.8 1.2E+03 0.027 27.7 14.4 175 429-611 92-283 (342)
247 PF01347 Vitellogenin_N: Lipop 24.2 3.4E+02 0.0074 34.8 10.2 149 118-285 450-616 (618)
248 PF06371 Drf_GBD: Diaphanous G 24.0 1.6E+02 0.0035 31.2 6.2 77 214-290 104-186 (187)
249 KOG1822 Uncharacterized conser 23.9 2.6E+02 0.0057 39.9 9.0 211 35-253 25-249 (2067)
250 PLN03076 ARF guanine nucleotid 23.7 7.9E+02 0.017 35.9 13.9 174 123-296 1244-1494(1780)
251 PF03224 V-ATPase_H_N: V-ATPas 23.6 5.7E+02 0.012 29.8 11.1 110 107-218 109-228 (312)
252 KOG2062 26S proteasome regulat 22.7 5.7E+02 0.012 33.4 10.9 131 149-292 523-654 (929)
253 KOG4825 Component of synaptic 22.3 1.2E+03 0.026 28.8 12.8 179 108-290 398-596 (666)
254 KOG4413 26S proteasome regulat 22.3 2.1E+02 0.0045 33.6 6.6 78 542-620 83-166 (524)
255 PF11707 Npa1: Ribosome 60S bi 22.1 1.2E+03 0.025 27.6 13.4 146 147-294 58-240 (330)
256 cd03571 ENTH_epsin ENTH domain 22.1 6.6E+02 0.014 25.4 9.6 98 109-213 7-116 (123)
257 KOG1941 Acetylcholine receptor 21.5 8.7E+02 0.019 29.3 11.4 124 476-615 136-262 (518)
258 COG5116 RPN2 26S proteasome re 21.2 1.5E+02 0.0032 37.1 5.4 94 515-615 561-655 (926)
259 PF11865 DUF3385: Domain of un 20.3 4.7E+02 0.01 27.6 8.5 143 142-294 7-160 (160)
260 KOG2549 Transcription initiati 20.3 4.2E+02 0.0091 33.4 9.0 134 148-295 180-331 (576)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-51 Score=505.51 Aligned_cols=626 Identities=26% Similarity=0.280 Sum_probs=485.4
Q ss_pred cchhHHHHHHHHHHHHh---------------hhChhhHHHHHHHHHHHHHHhhHHHHhhhc-cCCHHHHHHHHHHHhcC
Q 000834 3 QLSFWVLCINLLVQVTT---------------HFMWNSTSGLVSSLRFLRLFYFADIKGFLA-DVKPALLSALDAEYEKN 66 (1263)
Q Consensus 3 ~~~~~~~~~~~l~k~~~---------------h~d~~VR~~ai~Ll~~ly~~iG~~l~~~l~-dlkp~~l~~Le~efeK~ 66 (1263)
|.+|.+.|+..|..-|+ -+|+|||.++.++++++|+|.|...+.++. .--+.++.++...+.+.
T Consensus 114 ~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (815)
T KOG1820|consen 114 KIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLADKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKS 193 (815)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccccccccCccccccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhcccc
Confidence 45677888877544332 359999999999999999999999888874 44455566665555544
Q ss_pred CCCCCCCCcccccc--ccc------------cc--------cCC-CCCCCCCCccccccCCCHHHHHhcCCCChhHHHHH
Q 000834 67 PFEGTVVPKKTVRA--SES------------TS--------SVS-SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 123 (1263)
Q Consensus 67 ~~~~~p~p~R~~r~--~~~------------~~--------~~~-~~~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEa 123 (1263)
...-.-.+.+...+ +.. .. .+. .+..|++||+||++++++.|...|.|++||+|+||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Ea 273 (815)
T KOG1820|consen 194 MMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEA 273 (815)
T ss_pred ccccccccccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHH
Confidence 32100001110000 000 00 011 25678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHH
Q 000834 124 IEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 203 (1263)
Q Consensus 124 Le~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR 203 (1263)
|+.+.++++++...++.+.++.+...++.+..|+|++|+..|+.+|..||.+||..|.+|+..++|.+|+++||+|+.+|
T Consensus 274 le~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~ 353 (815)
T KOG1820|consen 274 LEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELR 353 (815)
T ss_pred HHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHH
Confidence 99999999864323555545777788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC----CchhhhHHHHHhhhcCCCHHHH
Q 000834 204 ECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVR 279 (1263)
Q Consensus 204 ~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~eVR 279 (1263)
+++.+|+|+|+++++++.+.+.|..++.++ +|+.|.+++.|+.+++...++. .....+++.+++..+|++++||
T Consensus 354 d~l~~~~d~~~ns~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR 431 (815)
T KOG1820|consen 354 DALLKALDAILNSTPLSKMSEAILEALKGK--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVR 431 (815)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHH
Confidence 999999999999999999999999999998 5999999999999999988742 2345566668888999999999
Q ss_pred HHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCCCCCCC-CCCC-------CCCCCCCCCCC
Q 000834 280 KAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSK-VPKS-------ASNGVSKHGNR 351 (1263)
Q Consensus 280 ~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk-~~~~-------~s~~~~k~~~~ 351 (1263)
+||.++++++|+++|++.+.+++.++++..+..+.|++++........++++++..+ .++. ..+....++.
T Consensus 432 ~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~- 510 (815)
T KOG1820|consen 432 KAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKN- 510 (815)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCC-
Confidence 999999999999999999999999999877778889888632211111111111110 0000 0011111110
Q ss_pred CCccCCCCCCCCCCCccccchhhhhhhhhhh--cccCCchhHHhhhhhcccccCCCchhHHHHHHHHHHhhhhHHHHhhh
Q 000834 352 AISSRVIPTKGARPESIMSVQDFAVQSQALL--NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRL 429 (1263)
Q Consensus 352 ~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~--~~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~~~~l~~~L 429 (1263)
++..+|.+.+....+... +.+ ++.+.. ..+.++.....+..+.+|.+..+..+..+ ++...++......|
T Consensus 511 --~~a~vps~~ss~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~ 582 (815)
T KOG1820|consen 511 --SAASVPSKLSSANSSRKI-PEA-AEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKE----PSKKFVPKSLAKSM 582 (815)
T ss_pred --ccccCCCcccccccccCC-cch-hhccccccccccchhhhhhhhccCccccccchhhhhc----ccccccchhhhhcc
Confidence 011111111111100000 000 111111 01112222233456778988877655444 37778899999999
Q ss_pred cCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHH
Q 000834 430 LSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLP 509 (1263)
Q Consensus 430 fs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP 509 (1263)
|+.|++.+.++++.+.........+..++.|++++|+..||+|+|+++..+.++++...++.+...++..+..+...+.|
T Consensus 583 ~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~ 662 (815)
T KOG1820|consen 583 KLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFRE 662 (815)
T ss_pred CccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccch
Confidence 99999999999999999988888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHh
Q 000834 510 CLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASL 589 (1263)
Q Consensus 510 ~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~ 589 (1263)
++..++|..++.+++..+.+......+++.....+++.+++..++.++|.+|+..+..++..-|.........+..++-.
T Consensus 663 i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~ 742 (815)
T KOG1820|consen 663 ILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL 742 (815)
T ss_pred hhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999988877775533233445677888
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHCHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000834 590 TAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKV 639 (1263)
Q Consensus 590 i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l~~L~~~~~~~Leer~kr~~ 639 (1263)
..+.++.+|.++.++++..|.+.|+.+|+..+...+.++++++.+|++..
T Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 743 VKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred ccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhcCccc
Confidence 89999999999999999999999999999999999999999999997543
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-31 Score=327.41 Aligned_cols=747 Identities=17% Similarity=0.186 Sum_probs=449.1
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHH-HHHHHHHHHhcCchhhhhhhchHH
Q 000834 111 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT-LITLGAVASAMGPAVEKSSKGVLS 189 (1263)
Q Consensus 111 ~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~A-L~~l~~LA~alg~~f~~~~~~llp 189 (1263)
.+.++.|+.|.++...+..-. |..-...+ ..++...+.+.+.-+..+--.+++
T Consensus 13 ~l~~~~w~~~~~~~~ql~~~~--------------------------~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~ 66 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQLLTDS--------------------------NVGAQEQAAALRLLRDASAISALLNAKNIQLLS 66 (815)
T ss_pred hhhhhhhhhhHHHHHHHhhhc--------------------------chhhhHhHHHHHHHHHhhcchhhhhccceeecc
Confidence 367778888877766544433 22222222 223444455666667778888999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCC-chhhhHHHHH
Q 000834 190 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DAAHLLKPAS 268 (1263)
Q Consensus 190 ~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~-~~~~ll~pl~ 268 (1263)
..+.+|..+.+++|+...+++..+.........++.+...+.-+ .|+.-..++.-+...+...+... ....++ +.+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k--~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~-~~~ 143 (815)
T KOG1820|consen 67 FGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFK--SPKKIAAAVAAVLSLVEEFGKPKVPSKAFI-KHV 143 (815)
T ss_pred chhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhcccc--CchhHHHHHHHHHHHHHHhcCCCCcccccc-ccC
Confidence 99999999999999999999998855544444444444444433 45555556566666666554322 223333 333
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 000834 269 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKH 348 (1263)
Q Consensus 269 ~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~k~ 348 (1263)
..+.| .+||.++..++..||+++|... ..++. +........++....+... ..... .+. +...+..
T Consensus 144 ~~l~D--~nvr~~~~~l~v~i~r~~G~~~-~~~~~---~~~~~~l~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~--- 209 (815)
T KOG1820|consen 144 GSLAD--KNVRSEASKLLVEIYRWTGDAS-KPLLF---KASAPGLMGKLGSYQGKSM-MSFFN---EKR-PLLKSQP--- 209 (815)
T ss_pred ccccc--cccchhhcccchhhhhhcCCCc-Ccccc---hhhhHHHHHHHHhhccccc-ccccc---ccc-ccccccc---
Confidence 33334 4599999999999999999653 33222 1222222222221111000 00000 000 0000000
Q ss_pred CCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHHHHHHHHHhhhhHHHHhh
Q 000834 349 GNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRR 428 (1263)
Q Consensus 349 ~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~~~~l~~~ 428 (1263)
. ..+ .+ |.++.........+..+|.|..|.+......+.++.+++.+++...
T Consensus 210 --~--------~~~-~~-----------------n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~ 261 (815)
T KOG1820|consen 210 --Q--------DES-DP-----------------NVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETE 261 (815)
T ss_pred --c--------ccc-CC-----------------ChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHh
Confidence 0 000 00 0000000111112334556655544444445678889999999999
Q ss_pred hcCccHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhH
Q 000834 429 LLSTDFKKQVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVF 507 (1263)
Q Consensus 429 Lfs~dwk~Rl~ale~L~~~l~~~~-~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~ 507 (1263)
|+|++||+|.+|++.+.+.+++.. .....+.+++++|+..+++|.|++|+...+.+|..+...|....+. | +..+
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~---~-~~~v 337 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK---Y-AKNV 337 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH---H-HHhh
Confidence 999999999999999999998876 3344568899999999999999999999999999998887765333 3 6778
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcc-cccC-ccchH-H
Q 000834 508 LPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGA-EISG-QLKSL-Q 584 (1263)
Q Consensus 508 lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~-~v~~-~~k~L-~ 584 (1263)
+|.|++++||.|..+|+..+.+++.++..|+..+++++|++++++|||+.|.+|..|+.+++..+|. .++. ..+.+ +
T Consensus 338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p 417 (815)
T KOG1820|consen 338 FPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVP 417 (815)
T ss_pred cchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhH
Confidence 8999999999999999999999999999999999999999999999999999999999999999994 3333 34445 9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHCHH-HHHHhcCCCHHHHHHHHHHHHHHHH--HHhhhcCCCCchhhh--hhhh
Q 000834 585 IVASLTAERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFKWKVR--EMEKKKEGKPGEARA--ALRR 659 (1263)
Q Consensus 585 ~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~-l~~~l~~L~~~~~~~Leer~kr~~~--~~~k~~~~~P~~~~~--~~~~ 659 (1263)
.++++++|+|.+||+||+++++++|+++|+. +.+++.++.+.++..++|+++..-- ..++.....|..... ....
T Consensus 418 ~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~ 497 (815)
T KOG1820|consen 418 HLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVV 497 (815)
T ss_pred HHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccccccccccCCCcCCCCCccccccceec
Confidence 9999999999999999999999999999999 5668889988899999999976211 111111111110000 0000
Q ss_pred cccc-CCCc--------cc--cccCccccc-CCCcccccccCCCcccc----cccccccccccc----CCCCCc--hH-H
Q 000834 660 SVRE-NGSD--------IA--EQSGDVSQS-VSGPTLMRRNYGHSELH----VERSIMPRALAS----VSGPTD--WN-E 716 (1263)
Q Consensus 660 ~~~~-~~~~--------~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~p~~--~~-~ 716 (1263)
+... +... ++ ..+...++. ++.+...+......++. ..+...|-.... ..++.. .. .
T Consensus 498 ~~~~~~~~~~p~~~~a~vps~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~ 577 (815)
T KOG1820|consen 498 KVGLSNFSGLPKNSAASVPSKLSSANSSRKIPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKS 577 (815)
T ss_pred ccccccCCCCCCCccccCCCcccccccccCCcchhhccccccccccchhhhhhhhccCccccccchhhhhcccccccchh
Confidence 0000 0000 00 000000110 00000000000000000 001111100000 000000 00 0
Q ss_pred HhhhhhcCCchhhhhhHHHHHHHHhhhcCCCCcchh-H-----HHHHhHHH----HHHHHHHHHHHHhc-cccccc----
Q 000834 717 ALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVM-D-----ELVKDADR----LVSCLANKVAKTFD-FSLTGA---- 781 (1263)
Q Consensus 717 ~l~~i~~~~~~~~v~~~k~~~~~l~~~~~d~~~~~~-~-----~l~~~~d~----~v~~l~~~~~~~f~-~~~~~~---- 781 (1263)
.......+|..+.+.+++..+...... -.+.+.. + ..+++.+. ....+.. +...|+ .++..+
T Consensus 578 ~~~~~~~~d~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~l~~~~lr~~~~~~~~~~~~~e~-l~~~~~~~~l~~~~~~~ 654 (815)
T KOG1820|consen 578 LAKSMKLDDFKQHTAKLEILQRAEAAN--SKEYTSIQDLLLEWLVLRFEETNEALLGKVLEL-LIAEFQTLRLIEAVMAL 654 (815)
T ss_pred hhhccCccchhhhhhhhhhhhhhhccc--ccccchHHhhhhHHHHHHhhcccHHhhhhhhhh-hhhhhhhcchhhhcccH
Confidence 011112344444444444433322211 1111111 0 01111110 0000000 011111 111100
Q ss_pred hhhh--hH----HHHHHHHHHhccHHHHHHhcHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHhhcCCCcc
Q 000834 782 SSRS--CK----YVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS 855 (1263)
Q Consensus 782 ~~r~--~k----~ll~~L~~~f~~~~la~~~s~~~L~~ll~~Ll~~Lld~~~~~~~~~~~l~kalN~l~lriLe~~~~t~ 855 (1263)
..+. -. .+.....+.|+......+.+.+.+.... +.......++.+++-.+..+.+++..+...+.+.
T Consensus 655 ~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~------~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~ 728 (815)
T KOG1820|consen 655 EEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLM------MVPSLREALELKEREIRSEELLVIKLLFSSEGTS 728 (815)
T ss_pred hhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccc------cchhhHhhccccchhhHHHHhhhhheeeccCCcc
Confidence 0011 01 2333334456655555555555555444 3333344567788999999999999999999999
Q ss_pred hHHHHHHhhcccCCCCCCCCCCcchhhhchhhhHHHHHHHHHHhhhhhhhhcCCCCHHHHHHHHHHHHhhhChHHHhhcC
Q 000834 856 SFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRA 935 (1263)
Q Consensus 856 ~f~aLl~LL~~~~~~~~~s~~~~~~~~~~~~K~~eLv~KCLwK~~K~l~~~~~~i~~~~lL~~ih~Fl~~~p~~~~r~r~ 935 (1263)
.+..+-.++.... + ......++...+++|+|+..+.+++.+....+.....++|.+...||++. |.
T Consensus 729 ~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~---~~ 794 (815)
T KOG1820|consen 729 ILKSLRVLNIIAL---L--------VKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMFPKER---RE 794 (815)
T ss_pred hhhhHhhhhcccc---c--------ccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhcCccc---cc
Confidence 9998888887642 1 12356799999999999999999999999999999999999999999874 33
Q ss_pred CCCCCchHHHHHHHHHHHHh
Q 000834 936 GADDKPLRMVKTVLHELVKL 955 (1263)
Q Consensus 936 ~~~D~PlRTvKTiL~~lvk~ 955 (1263)
..+.-|+++-++..|++|+.
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~ 814 (815)
T KOG1820|consen 795 TKSEFPISTLLTLQQQLCKL 814 (815)
T ss_pred ccccCcchHhHhhHHHHhcc
Confidence 45889999999999999975
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.79 E-value=1e-18 Score=193.00 Aligned_cols=206 Identities=21% Similarity=0.321 Sum_probs=143.5
Q ss_pred cCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCc----hhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcC
Q 000834 102 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMG 177 (1263)
Q Consensus 102 ~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~----~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg 177 (1263)
..|.+.|..+-.+.+|++|.+||+.|+.++....+.-.+..+ .++...+...+.|.|..|+..|+.++..++..+|
T Consensus 6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 345556766778899999999999999999863111111112 2233466678899999999999999999999999
Q ss_pred chhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCC
Q 000834 178 PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 255 (1263)
Q Consensus 178 ~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~-l~~l-l~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~ 255 (1263)
.+|++|+..++|.++++++|+|+.||++|.+||.+++++++ ...+ ++.+..++.+| +|.+|..++.|+...+...+
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT--
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999998 5555 77888888887 59999999999999999887
Q ss_pred C-CC------chhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHH
Q 000834 256 G-FP------DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL 310 (1263)
Q Consensus 256 ~-~~------~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~ 310 (1263)
. .. .+..+++.+..+++|++++||++|.+++..+++++|++. ..++..|++..+
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~q 224 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQ 224 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-------------
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhccc
Confidence 2 11 124566668999999999999999999999999999764 555677775443
No 4
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.78 E-value=3.3e-18 Score=189.03 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=139.6
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhcccc-----chhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCC
Q 000834 424 DLHRRLLSTDFKKQVDGLEMLQKALPSI-----RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYS 498 (1263)
Q Consensus 424 ~l~~~Lfs~dwk~Rl~ale~L~~~l~~~-----~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~ 498 (1263)
.|.....+.||+.|.+|++.|..++..+ .+.....+.-++..+...+.|.|++|+..++.++..++..+...
T Consensus 11 ~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--- 87 (228)
T PF12348_consen 11 ALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--- 87 (228)
T ss_dssp THHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG---
T ss_pred HHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh---
Confidence 3444557899999999999999999877 12233334444457777889999999999999999999877654
Q ss_pred cchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcC-Cccc-HHHHHHhhccCChHhHHHHHHHHHHHHHhhc--c
Q 000834 499 LTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS-ATKT-LPYILEGLRSKNNRTRIECVDLVGFLIDHHG--A 574 (1263)
Q Consensus 499 lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~-~skv-~~~ll~glksKN~rvR~ecL~~L~~lI~~~G--~ 574 (1263)
|..+ +..++|.|+.++||.+..||+.+..++..++..++ ..++ +.++..++++|||++|.+|+.|+..++..+| .
T Consensus 88 ~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 88 FEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp GHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 5555 89999999999999999999999999999999998 5666 8888889999999999999999999999999 2
Q ss_pred cccCc---cchH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHHHhcCCCHHHHHHHH
Q 000834 575 EISGQ---LKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLD 632 (1263)
Q Consensus 575 ~v~~~---~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l~~L~~~~~~~Le 632 (1263)
..... .+.+ +.|.+++.|+|++||.+|..+++.+|.++|+....++..|++..+++||
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYLE 228 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccCC
Confidence 32222 1334 8899999999999999999999999999999999999999999999886
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.8e-07 Score=116.83 Aligned_cols=206 Identities=15% Similarity=0.192 Sum_probs=145.6
Q ss_pred CCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHH
Q 000834 95 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 174 (1263)
Q Consensus 95 lprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~ 174 (1263)
+++.-|..-+=+-+-..+.+.+||+|++||-.|-.+.+.+.+-+.+. +..++.+..+.|+|.+..|...|+++++.++.
T Consensus 340 L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 340 LGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred CChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 44444433333345567889999999999999999998765555554 78888888899999999999999999999999
Q ss_pred hcCchhhhhhhchHH-HHHHHhCCCcH-HHHHHHHHHHHHHHHhcCchh---hHHHHHH----HHhhccCChhHHHHHHH
Q 000834 175 AMGPAVEKSSKGVLS-DILKCLGDNKK-HMRECTLTVLDAWLAAVHLDK---MVPYVTT----ALTDAKLGAEGRKDLFD 245 (1263)
Q Consensus 175 alg~~f~~~~~~llp-~lL~kl~DkK~-~VR~aa~~aL~a~~~~~~l~~---ll~~l~~----~L~~kk~~p~vR~e~L~ 245 (1263)
-+.+++.++....+| .++..+-|... .|...|..|+..+.+-+.-+. .++.|.+ .|..+ .++.+|..++.
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~-~~~~v~e~vvt 497 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS-SKPYVQEQAVT 497 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 999999987777776 45555555444 788888888998888775332 3333333 33333 35889999888
Q ss_pred HHHHHHccCCC--CCchhhhHHHHHhhh---c-CCCHHHHHHHHHHHHHHHHhcChhhhhhhh
Q 000834 246 WLSKQLTGLSG--FPDAAHLLKPASIAM---T-DKSSDVRKAAEACIVEILRAGGQETIEKNL 302 (1263)
Q Consensus 246 ~L~~~l~~~~~--~~~~~~ll~pl~~~L---~-D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l 302 (1263)
-|+..-..... .+.+..+++-+..+| + +-..++|-...+|+..+-..+|.+.|.+..
T Consensus 498 aIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 498 AIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 87766544432 122222333344455 2 345678888889999999999987777754
No 6
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=5.1e-09 Score=125.49 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=156.0
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHH-HHHHHHHHHHhcCchhhhhh
Q 000834 106 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA-TLITLGAVASAMGPAVEKSS 184 (1263)
Q Consensus 106 ~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~-AL~~l~~LA~alg~~f~~~~ 184 (1263)
+.+.+.++..+-.+|..|-.++..+++. .-++.-.-..++..|.+.+.|.|...... ++-+.......+|+.|+||+
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi 214 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI 214 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH
Confidence 4566778888999999999999999863 33332112457788888888888888875 66677788889999999999
Q ss_pred hchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC--CCc
Q 000834 185 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPD 259 (1263)
Q Consensus 185 ~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~---l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~--~~~ 259 (1263)
..++|.++.+++|+-+.||+|+..|..+++.+++ +..+++.+...+... +|+.+...+..+. ++..+.+ ...
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~--kWrtK~aslellg-~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA--KWRTKMASLELLG-AMADCAPKQLSL 291 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH--hhhhHHHHHHHHH-HHHHhchHHHHH
Confidence 9999999999999999999999999999999875 466777777777765 4999999987776 4444432 123
Q ss_pred hhhhHHH-HHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcC
Q 000834 260 AAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 305 (1263)
Q Consensus 260 ~~~ll~p-l~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L 305 (1263)
..+-+.| +...|+|+.++||++|.++|..+...+.+..|.++++.|
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~L 338 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTL 338 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3344444 677899999999999999999999999998888876654
No 7
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.4e-07 Score=111.18 Aligned_cols=380 Identities=17% Similarity=0.246 Sum_probs=242.7
Q ss_pred CHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCC---chhHHHHHHhhh-ccccHHHHHHHHHHHHHHHHhcCchh
Q 000834 105 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG---TGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAV 180 (1263)
Q Consensus 105 ~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~---~~eL~~aLk~rL-~DsN~~V~~~AL~~l~~LA~alg~~f 180 (1263)
+..+...+.||-+..||.|.-+|++++++ .+..++ +..++..|.+.+ ...+.+-...+|..+.+.+-++|.+-
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~---l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~ 78 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKD---LVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD 78 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc
Confidence 45677889999999999999999999975 233344 467778777766 45555555688888889999999998
Q ss_pred hhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------------------------------------------
Q 000834 181 EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------------------------------------------ 218 (1263)
Q Consensus 181 ~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~------------------------------------------ 218 (1263)
.+|...++|+++.+|+|+...||--|.++|..+++.+.
T Consensus 79 ~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccc
Confidence 88999999999999999999999999999998876542
Q ss_pred ------chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC---CCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 000834 219 ------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 289 (1263)
Q Consensus 219 ------l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l 289 (1263)
++.+++.+-+-+... +|-.|..++.||.-... .+. ...+..++..++..|.|.+.+||..+..++..+
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred cccccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 111222222223333 68899999999864432 222 123345566689999999999999999999999
Q ss_pred HHhcChhhhh-hh-------hhcCCh----hHHHH---HHHHhhhcCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000834 290 LRAGGQETIE-KN-------LKDIQG----PALAL---ILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 354 (1263)
Q Consensus 290 ~~~vG~~~i~-~~-------l~~L~~----~~~~~---ilek~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s 354 (1263)
.+-+..++-- ++ ..++.. .+.++ |.|-++-.| + .
T Consensus 236 L~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g--------~------------~----------- 284 (675)
T KOG0212|consen 236 LAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG--------R------------D----------- 284 (675)
T ss_pred HHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC--------c------------c-----------
Confidence 8776643211 11 112210 00000 011110000 0 0
Q ss_pred cCCCC-CCCCCCCccccchhhhhhhhhhhcccCC---chhHHhhh---hhcccccCCCch-hHHHHHHHHHHhhhhHHHH
Q 000834 355 SRVIP-TKGARPESIMSVQDFAVQSQALLNVKDS---NKEDRERM---VVRRFKFEDPRI-EQIQELENDMMKYFREDLH 426 (1263)
Q Consensus 355 ~r~~~-~~~~~~~~~~s~~~~~~~s~pl~~~~~~---~k~~~~~~---~~~kw~f~~p~~-e~ve~L~~q~~~~~~~~l~ 426 (1263)
..+ ..+ .-+.-++-..+. +..+-... ...+. +..++. ++++ +. .+=+.+.
T Consensus 285 --~l~~~s~-------------il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l-~s~~~~~~~id-----~~-~ii~vl~ 342 (675)
T KOG0212|consen 285 --LLLYLSG-------------ILTAILPCLSDTEEMSIKEYAQMVNGLLLKL-VSSERLKEEID-----YG-SIIEVLT 342 (675)
T ss_pred --hhhhhhh-------------hhhhcccCCCCCccccHHHHHHHHHHHHHHH-Hhhhhhccccc-----hH-HHHHHHH
Confidence 000 000 000000000000 00000000 00000 000000 0010 01 1123455
Q ss_pred hhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHh
Q 000834 427 RRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 506 (1263)
Q Consensus 427 ~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~ 506 (1263)
..+++..-..|+++++++.-.....+.....+.|-+|..+.+.+.|+.--|+.+.|+++..++.- .+.. .-.-
T Consensus 343 ~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s---~~~~----~~~~ 415 (675)
T KOG0212|consen 343 KYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS---SNSP----NLRK 415 (675)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC---cccc----cHHH
Confidence 66667777899999999999988888888888888888888889999999999999988876642 2111 2267
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhh
Q 000834 507 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 550 (1263)
Q Consensus 507 ~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~gl 550 (1263)
|+-.|++.....+.-++....=|++++|....+.+++..+.+-+
T Consensus 416 fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 416 FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL 459 (675)
T ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 88888888877776778888889999999998888877766654
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.85 E-value=1e-05 Score=100.15 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=144.9
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
.++++|.+++=.-|--|...|..-++.....+.......++++|-+.|.|+|--|+..|..|++-|+...+ +.++..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk---e~~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK---EDQLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch---HHHHHH
Confidence 57899998888889999999888887654444433247889999999999999999999999999997776 446777
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhhc----cCChhHHHHHHHHHHHHHccCC
Q 000834 187 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDA----KLGAEGRKDLFDWLSKQLTGLS 255 (1263)
Q Consensus 187 llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l-------~~ll~~l~~~L~~k----k~~p~vR~e~L~~L~~~l~~~~ 255 (1263)
++-.++.++-.+|...|+-.--+|.+++..+.+ ..++..+.+-|... .....+|-++++.|...+..++
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 778888887777888899998899988876542 23444444444322 2234589999999999998887
Q ss_pred CC-C-chhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhh
Q 000834 256 GF-P-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 303 (1263)
Q Consensus 256 ~~-~-~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~ 303 (1263)
.. + ....+++-+..-|.-.-.-||+.|.-+++.+....+.+.....+.
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~ 215 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIE 215 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 52 2 233444445555777888999999999999998888665544433
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1e-05 Score=97.07 Aligned_cols=422 Identities=17% Similarity=0.191 Sum_probs=256.3
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhc--Cchhhhhhh
Q 000834 108 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM--GPAVEKSSK 185 (1263)
Q Consensus 108 ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~al--g~~f~~~~~ 185 (1263)
++..-.|.+=.+||..=..+.-+++-.-.++.|+ ++.++.-+-++..|.|-+|+..|++..-.+|..- ..-..+|+.
T Consensus 220 lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~ 298 (885)
T KOG2023|consen 220 LFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD 298 (885)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 4444566677788887777777776433578887 8999998888899999999999999998888853 233689999
Q ss_pred chHHHHHHHhC--C--------C----------------------------------------------cHHHHHHHHHH
Q 000834 186 GVLSDILKCLG--D--------N----------------------------------------------KKHMRECTLTV 209 (1263)
Q Consensus 186 ~llp~lL~kl~--D--------k----------------------------------------------K~~VR~aa~~a 209 (1263)
.++|.++..+. | . .=++|.+..++
T Consensus 299 kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAa 378 (885)
T KOG2023|consen 299 KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAA 378 (885)
T ss_pred HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHH
Confidence 99999987652 1 0 02588899999
Q ss_pred HHHHHHhcC---chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccC-CC-CCchhhhHHHHHhhhcCCCHHHHHHHHH
Q 000834 210 LDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL-SG-FPDAAHLLKPASIAMTDKSSDVRKAAEA 284 (1263)
Q Consensus 210 L~a~~~~~~---l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~-~~-~~~~~~ll~pl~~~L~D~~~eVR~aA~~ 284 (1263)
||-+....+ ++.++|.+.+.|.+. .|.+|+..+-.|...-+.. .. .+.+..+++.++.||+|+.+-||.-++=
T Consensus 379 LDVLanvf~~elL~~l~PlLk~~L~~~--~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCW 456 (885)
T KOG2023|consen 379 LDVLANVFGDELLPILLPLLKEHLSSE--EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCW 456 (885)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCcc--hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeee
Confidence 998887775 456677777777765 5999998754444333322 11 2345556666899999999999999999
Q ss_pred HHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC
Q 000834 285 CIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGAR 364 (1263)
Q Consensus 285 ~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~ 364 (1263)
.|..+-+++-.+.-.+++.++-..-++.++++=+ +
T Consensus 457 TLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK-----------------------------~---------------- 491 (885)
T KOG2023|consen 457 TLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK-----------------------------K---------------- 491 (885)
T ss_pred eHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH-----------------------------H----------------
Confidence 9999888887665334433332222222222100 0
Q ss_pred CCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHH---HHHHHHHHhhhhHHHHhhhcCccHHHHHHHH
Q 000834 365 PESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQI---QELENDMMKYFREDLHRRLLSTDFKKQVDGL 441 (1263)
Q Consensus 365 ~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~v---e~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~al 441 (1263)
.+..+.++-+.+ + +...+|.| +.+-.++.-+|.+. .++|-..=..|+
T Consensus 492 ------VQEAAcsAfAtl-------e------------E~A~~eLVp~l~~IL~~l~~af~kY-----Q~KNLlILYDAI 541 (885)
T KOG2023|consen 492 ------VQEAACSAFATL-------E------------EEAGEELVPYLEYILDQLVFAFGKY-----QKKNLLILYDAI 541 (885)
T ss_pred ------HHHHHHHHHHHH-------H------------HhccchhHHHHHHHHHHHHHHHHHH-----hhcceehHHHHH
Confidence 011111110000 0 01111222 22223333233321 223333335566
Q ss_pred HHHHHhccc------------------------cchhhHH---HHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhh
Q 000834 442 EMLQKALPS------------------------IRKDIIE---VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRD 494 (1263)
Q Consensus 442 e~L~~~l~~------------------------~~~~~~~---~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~ 494 (1263)
..|.+.+-. .++++.+ |+--+-..+.-||----.-|.++|++++++-++.+..
T Consensus 542 gtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~ 621 (885)
T KOG2023|consen 542 GTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAK 621 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHh
Confidence 655555421 1222222 2222222222233333344666777776655444332
Q ss_pred cCCC----cchHH----HHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHH
Q 000834 495 EGYS----LTESE----AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG 566 (1263)
Q Consensus 495 ~~~~----lsd~e----a~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~ 566 (1263)
.... --|.+ +.-++..|++-+|... ...+..+.+...++..++..-|-||+.|...|+
T Consensus 622 ~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~i--------------e~Lva~snl~~lll~C~~D~~peVRQS~FALLG 687 (885)
T KOG2023|consen 622 VQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHI--------------EPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLG 687 (885)
T ss_pred ccCCccccCCCcceEEEeHHHHhHHHHHhhhch--------------HHHhhhccHHHHHHHHhccCChHHHHHHHHHHH
Confidence 2211 11111 2445666666666542 223345668888888999999999999999999
Q ss_pred HHHHhhcccccCccchH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHHHhc
Q 000834 567 FLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVG 621 (1263)
Q Consensus 567 ~lI~~~G~~v~~~~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l~ 621 (1263)
.+...+--.|.+....+ +.++..++--+-.|-+.|+-++|++...+|.+.+.+++
T Consensus 688 Dltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~ 743 (885)
T KOG2023|consen 688 DLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVS 743 (885)
T ss_pred HHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHH
Confidence 99876543344333333 77777777677778888999999999999988776653
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.7e-05 Score=101.11 Aligned_cols=444 Identities=13% Similarity=0.138 Sum_probs=274.1
Q ss_pred CCHHHHHhcCC-CChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhh
Q 000834 104 FTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 182 (1263)
Q Consensus 104 l~~~ll~~l~d-k~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~ 182 (1263)
|-..++..+.+ ..=..|+.--+-+..+... +-|....||...|-+.+++.|......|+-++..+..-.|..+.+
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~----~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARN----DLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHh----ccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 44455555543 4566777777767666642 223247899999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHhhc--cCChhHHHHHHHHHHHHHc
Q 000834 183 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALTDA--KLGAEGRKDLFDWLSKQLT 252 (1263)
Q Consensus 183 ~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~--------l~~ll~~l~~~L~~k--k~~p~vR~e~L~~L~~~l~ 252 (1263)
|...+.+-+.++++|.-..||-++..|+.+++.... +..++|.+...+..- ..+...-.++|+.|.+.+.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998763 334566555554311 1123345678888888887
Q ss_pred cCCCCCchhhhHHHHHh-hh-----cCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccC
Q 000834 253 GLSGFPDAAHLLKPASI-AM-----TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 326 (1263)
Q Consensus 253 ~~~~~~~~~~ll~pl~~-~L-----~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s 326 (1263)
..++ .+.+.+.-++. +| .+-+..+|..|.+++..++... -.+.+....+-..-.-.++..+-. ...
T Consensus 236 ~~pk--~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A--p~~~k~~~~~~~~lv~~~l~~mte---~~~- 307 (1075)
T KOG2171|consen 236 SEPK--LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA--PAMCKKLALLGHTLVPVLLAMMTE---EED- 307 (1075)
T ss_pred hchH--HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh--HHHhhhchhhhccHHHHHHHhcCC---ccc-
Confidence 6653 22333333222 22 5667789999999999888761 112221111111111111111100 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCc
Q 000834 327 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPR 406 (1263)
Q Consensus 327 ~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~ 406 (1263)
. ......-..+.+.... +....++-+.... -.-+
T Consensus 308 ------------------D------------------~ew~~~d~~ded~~~~-------~~~~A~~~lDrlA--~~L~- 341 (1075)
T KOG2171|consen 308 ------------------D------------------DEWSNEDDLDEDDEET-------PYRAAEQALDRLA--LHLG- 341 (1075)
T ss_pred ------------------c------------------hhhccccccccccccC-------cHHHHHHHHHHHH--hcCC-
Confidence 0 0000000000000000 0000000000000 0000
Q ss_pred hhHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHH
Q 000834 407 IEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLP 486 (1263)
Q Consensus 407 ~e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~ 486 (1263)
+ .++.+.+=+.+-..|.|.+|++|-+||-.|....++..+...+++|-++..+..+++|..+-|-..++..+.
T Consensus 342 g-------~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 342 G-------KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred h-------hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 0 112222223456678999999999999999999888888888899999999999999999999999998766
Q ss_pred HHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChH-HHHHHHHHHHHHHHHhcCCccc---HHHHHHh----h-ccCChHh
Q 000834 487 ELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE-KVREKMRELTKQIVNFYSATKT---LPYILEG----L-RSKNNRT 557 (1263)
Q Consensus 487 ~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~-~vR~~~~~il~~l~~v~~~skv---~~~ll~g----l-ksKN~rv 557 (1263)
.+-.-+ ...+..+.-..++|.|+..+-+... +|-..+-..+..+..-++.+.+ ++.+|+. + .+.++++
T Consensus 415 Q~stdl---~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v 491 (1075)
T KOG2171|consen 415 QMSTDL---QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYV 491 (1075)
T ss_pred hhhhhh---cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 544333 3345666677888899888855542 4444444444455555555544 4445552 2 4667888
Q ss_pred HHHHHHHHHHHHHhhcccccCc-cchHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHCHH
Q 000834 558 RIECVDLVGFLIDHHGAEISGQ-LKSLQIVASLTAE----RDGEIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 558 R~ecL~~L~~lI~~~G~~v~~~-~k~L~~Iak~i~D----~d~~VR~AAl~~l~~ly~~~G~~ 615 (1263)
|+.++.-|+..-..-+-....- ...++.+.+.+.. -...+|--.+.|++.+-..+|.+
T Consensus 492 ~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 492 QEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 9989999987766555221111 1223666665543 34567777788888888888843
No 11
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.76 E-value=6.5e-06 Score=96.02 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=138.0
Q ss_pred HHhhhcCc-cHHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHHhhcC-chHHHHHHHHHhHHHHHHHHhhcCC
Q 000834 425 LHRRLLST-DFKKQVDGLEMLQKALPSIRKD-----IIEVLDILLRWFVLQFCK-SNTTCLLKVLEFLPELFDTLRDEGY 497 (1263)
Q Consensus 425 l~~~Lfs~-dwk~Rl~ale~L~~~l~~~~~~-----~~~~lDlllk~l~lrl~D-tN~qV~~k~Le~L~~l~~~L~~~~~ 497 (1263)
++..+... .-.+|..|+.+|..++-.+.-. .-..++.+|..+ .| .++..-..+|.+|. .+|..+..
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL----~d~~~~~~k~laLrvL~---~ml~~Q~~ 363 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVL----SDSEDEIIKKLALRVLR---EMLTNQPA 363 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----ccchhhHHHHHHHHHHH---HHHHhchH
Confidence 33444433 4577889999998887654322 223344444443 34 33333334455444 44455555
Q ss_pred CcchHHHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccc
Q 000834 498 SLTESEAAVFLPCLVEKSGHNI-EKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI 576 (1263)
Q Consensus 498 ~lsd~ea~~~lP~LveKlGD~K-~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v 576 (1263)
.|-|+ +...+--+++--.|.. +++|.+..++++.+..+.|..++... ...+-.-.-..-.-|+.++.+++++....-
T Consensus 364 ~l~Ds-tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i-~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 364 RLFDS-TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNI-SPLILTADEPRAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred hhhch-HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHH-hhHHhcCcchHHHHHHHHHHHHHhhcCHHH
Confidence 66666 3455556666555554 46788899999888888887754433 222222223334578999999998776442
Q ss_pred cC-cc-chHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHC-HHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000834 577 SG-QL-KSLQIVASLTAERDGEIRKAALNTLATGYKILG-EDIWRYVGKLTDAQKSMLDDRFKWKVR 640 (1263)
Q Consensus 577 ~~-~~-k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G-~~l~~~l~~L~~~~~~~Leer~kr~~~ 640 (1263)
.. .. ...|.+.+..+...+.||++|+.|||.+|..+| +++..||++|+.+.+.+|+=+++|+..
T Consensus 442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 21 12 223777778899999999999999999999999 789999999999999999999998754
No 12
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.50 E-value=0.00052 Score=83.50 Aligned_cols=423 Identities=20% Similarity=0.254 Sum_probs=229.9
Q ss_pred HHHhc-CCC-ChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 108 LVKSL-ESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 108 ll~~l-~dk-~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
|++.+ .++ .|+-|--++.-+++|+.=....+.|. ++.|+..+...|.|-+..|...+..+++.+|++.++ |.-
T Consensus 515 fLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlph-l~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P----ygi 589 (1172)
T KOG0213|consen 515 FLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPH-LKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP----YGI 589 (1172)
T ss_pred HHHHHhccccchhhhchhhHHHHHHHHHhcchhhhh-hHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC----cch
Confidence 55554 555 69999999999998775333345565 899999999999999999999999999999998763 444
Q ss_pred chHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----c-hh---------hHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000834 186 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----L-DK---------MVPYVTTALTDAKLGAEGRKDLFDWLSKQL 251 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~----l-~~---------ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l 251 (1263)
..+..+|+-|. +.+|..--..|-++.+.+| + +. ++-.+...+.+ |.-..|+-+|..+.+|-
T Consensus 590 e~fDsVlkpLw---kgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~s--PDeemkkivLKVv~qcc 664 (1172)
T KOG0213|consen 590 EQFDSVLKPLW---KGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGS--PDEEMKKIVLKVVKQCC 664 (1172)
T ss_pred HHHHHHHHHHH---HHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHHh
Confidence 34444443332 2233333333333333332 1 11 11111122221 12346777777777776
Q ss_pred ccCCCCCch--hhhHHHHHhhhcCC-CHH-HH--HHHHHHHHHHHHhcChhh-hhhhhhcCChh---HHHHHHHHhhhcC
Q 000834 252 TGLSGFPDA--AHLLKPASIAMTDK-SSD-VR--KAAEACIVEILRAGGQET-IEKNLKDIQGP---ALALILERIKLNG 321 (1263)
Q Consensus 252 ~~~~~~~~~--~~ll~pl~~~L~D~-~~e-VR--~aA~~~L~~l~~~vG~~~-i~~~l~~L~~~---~~~~ilek~~~~~ 321 (1263)
.+.+..+.. .+.++.++.+++-+ .+- =| +.-...-.+++..+|.+. +.+.+.+++.. =++-..+.+..-
T Consensus 665 ~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri- 743 (1172)
T KOG0213|consen 665 ATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRI- 743 (1172)
T ss_pred cccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHH-
Confidence 655432221 23334455555321 111 01 111234455666677543 33344444411 111111111000
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccc
Q 000834 322 ASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 401 (1263)
Q Consensus 322 ~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~ 401 (1263)
...-|. . .
T Consensus 744 ------------------------------------~~~lg~--------~----------------------------d 751 (1172)
T KOG0213|consen 744 ------------------------------------VGRLGA--------A----------------------------D 751 (1172)
T ss_pred ------------------------------------Hhcccc--------c----------------------------c
Confidence 000000 0 0
Q ss_pred cCCCchhHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHH
Q 000834 402 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKV 481 (1263)
Q Consensus 402 f~~p~~e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~ 481 (1263)
|+ +...|+|-.-+.-.|.+ + ...-..-+.|.-.+...+-. ...+++-.|+.-+.+++..+...|-+++
T Consensus 752 id---erleE~lidgil~Afqe----q--tt~d~vml~gfg~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqa 819 (1172)
T KOG0213|consen 752 ID---ERLEERLIDGILYAFQE----Q--TTEDSVMLLGFGTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQA 819 (1172)
T ss_pred cc---HHHHHHHHHHHHHHHHh----c--ccchhhhhhhHHHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHH
Confidence 00 00011111111100100 0 00001111222222222211 1122344455556668888889999999
Q ss_pred HHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcc-------cHHHHHHhhccCC
Q 000834 482 LEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK-------TLPYILEGLRSKN 554 (1263)
Q Consensus 482 Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~sk-------v~~~ll~glksKN 554 (1263)
++++..+...+...+ -+.+...+=-.|.|-+|.--..|--.+-..++.|+.+++-.+ ++|.+..-|++|.
T Consensus 820 adlis~la~Vlktc~---ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrh 896 (1172)
T KOG0213|consen 820 ADLISSLAKVLKTCG---EEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH 896 (1172)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhH
Confidence 998887777665432 122344444556888888776676666667777777774443 6666677789999
Q ss_pred hHhHHHHHHHHHHHHHhhcccccCc---cchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHH--HHHHhcCCCHHHHH
Q 000834 555 NRTRIECVDLVGFLIDHHGAEISGQ---LKSLQIVASLTAERDGEIRKAALNTLATGYKILGED--IWRYVGKLTDAQKS 629 (1263)
Q Consensus 555 ~rvR~ecL~~L~~lI~~~G~~v~~~---~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~--l~~~l~~L~~~~~~ 629 (1263)
-|+.+.|++.++.+-.+ |....+. -..+-.+..++..-+.++|.+|.+.+|-+.+.+|+. +-.++.+|+-.+++
T Consensus 897 eKVqen~IdLvg~Iadr-gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq 975 (1172)
T KOG0213|consen 897 EKVQENCIDLVGTIADR-GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQ 975 (1172)
T ss_pred HHHHHHHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHH
Confidence 99999999999876543 4332221 112234455566678999999999999999999997 66688888865443
No 13
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=9.2e-07 Score=98.53 Aligned_cols=180 Identities=18% Similarity=0.254 Sum_probs=145.2
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
..+.+|.+++|-...+||..+..+..- ++......+++++-++.+-+.+.+..|...|+.+++.|+..++..+......
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~f-h~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEF-HPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999988763 3433333378888888888999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCc----hhh
Q 000834 187 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD----AAH 262 (1263)
Q Consensus 187 llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~----~~~ 262 (1263)
++-.++.+-++.|.+||++|..||.+++.+..+..++..|..++.|.+ |.+|........+++...+...- ...
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhc--hhhhhhhhccccccceeccccchhhHhHHH
Confidence 999999999999999999999999999999999999999999998874 77777665455555555442111 122
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 000834 263 LLKPASIAMTDKSSDVRKAAEACIVEI 289 (1263)
Q Consensus 263 ll~pl~~~L~D~~~eVR~aA~~~L~~l 289 (1263)
++..+-..+.|+-+++|++|.-.+...
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhH
Confidence 333345567888888888887666543
No 14
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.45 E-value=3.6e-06 Score=98.05 Aligned_cols=205 Identities=20% Similarity=0.244 Sum_probs=153.7
Q ss_pred CHHHHHhcCCC-ChhHHHHHHHHHHHHHHHhccC-CCCCCchhHHHHHHhhhcc-ccHHHHHHHHHHHHHHHHhcCchhh
Q 000834 105 TPTLVKSLESP-DWKVRLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVE 181 (1263)
Q Consensus 105 ~~~ll~~l~dk-~WK~RkEaLe~L~~il~~a~~~-i~p~~~~eL~~aLk~rL~D-sN~~V~~~AL~~l~~LA~alg~~f~ 181 (1263)
..+.+.++.+. .-.+|++|+.+|..++.+. .+ +-...+++|...+-..+.| .+......||.+|+.+.+.-...|.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 34566777654 8899999999999988642 11 1111268888888888888 8899999999999999999888999
Q ss_pred hhhhchHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC--CC
Q 000834 182 KSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FP 258 (1263)
Q Consensus 182 ~~~~~llp~lL~kl~DkK~-~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~--~~ 258 (1263)
.+....+--+|+.-+|... .+|.|+..|+..+..+.++.. +..+...+.+. .-+.-..+++.+++.++.... .-
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~ 443 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILTA--DEPRAVAVIKMLTKLFERLSAEELL 443 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHH
Confidence 9999999999999998776 566666666666666666543 33444444432 123335677788888887753 12
Q ss_pred chhhhHHH-HHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHH
Q 000834 259 DAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 313 (1263)
Q Consensus 259 ~~~~ll~p-l~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~i 313 (1263)
.+.+-+.| +++..+..+..||+.|.-||.+++..+|.+.|.+++..|...+++-+
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 23333444 78888999999999999999999999999999999999997766543
No 15
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=0.00021 Score=86.73 Aligned_cols=410 Identities=17% Similarity=0.140 Sum_probs=257.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHH
Q 000834 113 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 191 (1263)
Q Consensus 113 ~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~l 191 (1263)
+|..-..|.+.++....++++++.. ..+.|.....++++ +.|-++....+..-+.++.. +...++....++-.+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~----~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~-~~~~d~~~~~~~~~~ 101 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQ----NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFH-LQIVDPRPISIIEIL 101 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHH----HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHh-ccccCcchhHHHHHH
Confidence 6777888999999999998865332 25778888888885 56666666665555555554 345567777888899
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhc---CchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC-CchhhhHHHH
Q 000834 192 LKCLGDNKKHMRECTLTVLDAWLAAV---HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDAAHLLKPA 267 (1263)
Q Consensus 192 L~kl~DkK~~VR~aa~~aL~a~~~~~---~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~-~~~~~ll~pl 267 (1263)
++.++---+.|+.+...||..+.-.. ..+.+.+.+..-+... ...-|..+-.-++..+....-. ..-..++.-+
T Consensus 102 ~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l 179 (569)
T KOG1242|consen 102 LEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTST--KIAERAGAAYGLAGLVNGLGIESLKEFGFLDNL 179 (569)
T ss_pred HHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccc--cHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHH
Confidence 99999999999999999999877543 3456666666666632 2444444443444455433211 1223455567
Q ss_pred HhhhcCCCH-HHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCCCCCCCCCCCCCCCCC
Q 000834 268 SIAMTDKSS-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS 346 (1263)
Q Consensus 268 ~~~L~D~~~-eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~ 346 (1263)
...+.|++. ..|+++.-++...+.++| ..+.+++-.+.+. |+.++....+ +++.+
T Consensus 180 ~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~----il~~~~d~~~-------------~Vr~A------ 235 (569)
T KOG1242|consen 180 SKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPS----ILTNFGDKIN-------------KVREA------ 235 (569)
T ss_pred HHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHH----HHHHhhccch-------------hhhHH------
Confidence 778888877 455568888899999999 4566666555432 3333321000 00000
Q ss_pred CCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHHHHHHHHHhhhhHHHH
Q 000834 347 KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLH 426 (1263)
Q Consensus 347 k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~~~~l~ 426 (1263)
...+. ..+. ..|. ..-+. ++=+.++
T Consensus 236 -------------------------a~~a~--kai~-----------------~~~~---~~aVK--------~llpsll 260 (569)
T KOG1242|consen 236 -------------------------AVEAA--KAIM-----------------RCLS---AYAVK--------LLLPSLL 260 (569)
T ss_pred -------------------------HHHHH--HHHH-----------------HhcC---cchhh--------HhhhhhH
Confidence 00000 0000 0010 01111 1122344
Q ss_pred hhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHh
Q 000834 427 RRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 506 (1263)
Q Consensus 427 ~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~ 506 (1263)
..|+...|+..+.+++-+.......+..+-.++--++..++-.++||.+.|-..+.+.|..+..... ..+...
T Consensus 261 ~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-------N~dI~~ 333 (569)
T KOG1242|consen 261 GSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-------NPDIQK 333 (569)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-------cHHHHH
Confidence 4555559999999999888665554444445566677778889999999999999987776655432 245789
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHH--HHhcCC--cccHHHHHHhhccCChHhHH---HHHHHHHHHHH-hhcccccC
Q 000834 507 FLPCLVEKSGHNIEKVREKMRELTKQI--VNFYSA--TKTLPYILEGLRSKNNRTRI---ECVDLVGFLID-HHGAEISG 578 (1263)
Q Consensus 507 ~lP~LveKlGD~K~~vR~~~~~il~~l--~~v~~~--skv~~~ll~glksKN~rvR~---ecL~~L~~lI~-~~G~~v~~ 578 (1263)
++|.|++-+||+...+.+.+..+...- ..+-++ +.+.+.+-.++...+.-++- .-.+.+..+++ .-.+ ..
T Consensus 334 ~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l--ap 411 (569)
T KOG1242|consen 334 IIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL--AP 411 (569)
T ss_pred HHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH--hh
Confidence 999999999999877777666665432 123333 34777777787544333322 33444445542 1111 11
Q ss_pred -ccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHH
Q 000834 579 -QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 617 (1263)
Q Consensus 579 -~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~ 617 (1263)
-.+.+|.+.+.+.|.+|+||..|..+++.+.+-+|+.-+
T Consensus 412 fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 412 FLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 123447888888999999999999999999888887743
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.31 E-value=0.0027 Score=79.55 Aligned_cols=511 Identities=15% Similarity=0.178 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhHH-HHhhhccCCH--------------HHHHHHHHHHhcCCCCCC
Q 000834 7 WVLCINLLVQVTTHFMWNSTSGLVSSLRFLRLFYFAD-IKGFLADVKP--------------ALLSALDAEYEKNPFEGT 71 (1263)
Q Consensus 7 ~~~~~~~l~k~~~h~d~~VR~~ai~Ll~~ly~~iG~~-l~~~l~dlkp--------------~~l~~Le~efeK~~~~~~ 71 (1263)
-.+++..|.|+++..|+.|-+.|++.+|-|-.-++.. ++...++|=+ .-+++.-.+..--.. ..
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~-~~ 123 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS-SF 123 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc-cc
Confidence 4678899999999999999999999998887777654 4433333222 222222222110000 00
Q ss_pred CCCc---ccccc-ccccc--cCCCC---------------CCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHH
Q 000834 72 VVPK---KTVRA-SESTS--SVSSG---------------GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKI 130 (1263)
Q Consensus 72 p~p~---R~~r~-~~~~~--~~~~~---------------~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~i 130 (1263)
-+|+ |.... .++-+ +..++ -.+++|.. ...|-.-++-++.+.---+||-|+-.|-.+
T Consensus 124 la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~f--h~~il~~l~~ql~s~R~aVrKkai~~l~~l 201 (1233)
T KOG1824|consen 124 LAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNF--HLSILKCLLPQLQSPRLAVRKKAITALGHL 201 (1233)
T ss_pred cccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcch--HHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 1111 10000 00000 00010 01344441 122222345667778888999999998888
Q ss_pred HHHhccCCCCCCchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHh---CCCcHHHHHHH
Q 000834 131 LEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDNKKHMRECT 206 (1263)
Q Consensus 131 l~~a~~~i~p~~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl---~DkK~~VR~aa 206 (1263)
....+ + .-|.+++.-|-+.|. -.+......-++||+.++.+.|..|..|...++|.+++-+ .+.-.-.|+..
T Consensus 202 a~~~~-~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 202 ASSCN-R---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHhcC-H---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 76432 1 126888887777775 3333444556899999999999999999999999999987 67777899999
Q ss_pred HHHHHHHHHhcCc------hhhHHHHHHHHh-hccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHH
Q 000834 207 LTVLDAWLAAVHL------DKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVR 279 (1263)
Q Consensus 207 ~~aL~a~~~~~~l------~~ll~~l~~~L~-~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR 279 (1263)
.+++..+...+.- ..++..+..++. +.|.+...-..- -+..+.... +... .-.+.-=+|-+=-||
T Consensus 278 lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDe---d~~~~ed~e---Dde~--~deYsDDeD~SWkVR 349 (1233)
T KOG1824|consen 278 LQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDE---DAMFLEDEE---DDEQ--DDEYSDDEDMSWKVR 349 (1233)
T ss_pred HHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccch---hhhhhhccc---cchh--ccccccccchhHHHH
Confidence 9999999988742 223333333332 111111110000 000111000 0000 123444456666677
Q ss_pred HHHHHHHHHH-----------HHhcChhhhhhhhhcCChhHHHHHHH----HhhhcCCCccCCCCCCCCCCCCCCCCCCC
Q 000834 280 KAAEACIVEI-----------LRAGGQETIEKNLKDIQGPALALILE----RIKLNGASQVSMGPTSKSSSKVPKSASNG 344 (1263)
Q Consensus 280 ~aA~~~L~~l-----------~~~vG~~~i~~~l~~L~~~~~~~ile----k~~~~~~~k~s~~p~sk~~sk~~~~~s~~ 344 (1263)
.||.+|+..+ ++.+|...+.+|-+.-. .-+..+++ -+++.++..+-
T Consensus 350 RaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREE-nVk~dvf~~yi~ll~qt~~~~~~------------------ 410 (1233)
T KOG1824|consen 350 RAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREE-NVKADVFHAYIALLKQTRPVIEV------------------ 410 (1233)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhh-hHHHHHHHHHHHHHHcCCCCccc------------------
Confidence 7777766554 34444433333321111 11111222 22221111100
Q ss_pred CCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHHHHHHHHHhhhhHH
Q 000834 345 VSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFRED 424 (1263)
Q Consensus 345 ~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~~~~ 424 (1263)
. .+.+ + .++. .+|. ....|..+. +++-+.
T Consensus 411 -----~---------------------~d~d------------~-~e~~---------g~~s--~~~~L~~~~-~~iVka 439 (1233)
T KOG1824|consen 411 -----L---------------------ADND------------A-MEQG---------GTPS--DLSMLSDQV-PLIVKA 439 (1233)
T ss_pred -----c---------------------cCch------------h-hhcc---------CCcc--chHHHHhhh-HHHHHH
Confidence 0 0000 0 0000 0000 000122222 233445
Q ss_pred HHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHH--HHHhHHHHHHHHhhcCCCcchH
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLK--VLEFLPELFDTLRDEGYSLTES 502 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k--~Le~L~~l~~~L~~~~~~lsd~ 502 (1263)
+..+|.++..|.|...+..|.+.+...+....++.+-++-.+..+|.|.++.-..+ .|-++. ..|...+..--..
T Consensus 440 i~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~---~~L~s~~p~~fhp 516 (1233)
T KOG1824|consen 440 IQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLY---SALISHPPEVFHP 516 (1233)
T ss_pred HHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHH---HHHhcCChhhccc
Confidence 66777788889999999999999988887777788888888888999988776665 334433 3344443332233
Q ss_pred HHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCC---------cc----cHHHHHHhhccC--ChHhHHHHHHHHHH
Q 000834 503 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA---------TK----TLPYILEGLRSK--NNRTRIECVDLVGF 567 (1263)
Q Consensus 503 ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~---------sk----v~~~ll~glksK--N~rvR~ecL~~L~~ 567 (1263)
....+.|.++.-+||+--+|...+--+..+++.++-+ +. ++...+..++.+ .-.+|+..+.-|+.
T Consensus 517 ~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 517 HLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred chhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 3577788888899999877766655555566665422 22 333344445433 46789999999999
Q ss_pred HHHhhcccccC--ccchHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000834 568 LIDHHGAEISG--QLKSLQIVASLTAERDGEIRKAALNTLATG 608 (1263)
Q Consensus 568 lI~~~G~~v~~--~~k~L~~Iak~i~D~d~~VR~AAl~~l~~l 608 (1263)
+|-.|| +..+ ....|+...+-+ .|.-.|-+|..++..+
T Consensus 597 ~i~~fg-D~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~I 636 (1233)
T KOG1824|consen 597 IIANFG-DFLGNELPRTLPILLERL--GNEITRLTAVKALTLI 636 (1233)
T ss_pred HHHHHh-hhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHH
Confidence 999999 4333 123344333333 3556677777666544
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.22 E-value=0.0023 Score=79.72 Aligned_cols=434 Identities=15% Similarity=0.175 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhHHHHhhhccCCHHHHHHHHHHHhcCCCCCCCCCcccccccccccc
Q 000834 7 WVLCINLLVQVTTHFMWNSTSGLVSSLRFLRLFYFADIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 86 (1263)
Q Consensus 7 ~~~~~~~l~k~~~h~d~~VR~~ai~Ll~~ly~~iG~~l~~~l~dlkp~~l~~Le~efeK~~~~~~p~p~R~~r~~~~~~~ 86 (1263)
...|+|+|-|=+.|.|+-+|.-|...++.+. .+.+- ..
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~-----------~~---------------------------- 114 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMA-----------EP---------------------------- 114 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHH-----------HH----------------------------
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchh-----------hH----------------------------
Confidence 4567777777777777777777777777654 12211 11
Q ss_pred CCCCCCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchh-HHHHHHhhhccccHHHHHHH
Q 000834 87 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNLVMAT 165 (1263)
Q Consensus 87 ~~~~~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~e-L~~aLk~rL~DsN~~V~~~A 165 (1263)
+-+.+.+.+.|++|-+|+.|+..+.++... .|..+.. +...|.+.+.|.|..|+..|
T Consensus 115 -----------------l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-----~p~~~~~~~~~~l~~lL~d~~~~V~~~a 172 (526)
T PF01602_consen 115 -----------------LIPDVIKLLSDPSPYVRKKAALALLKIYRK-----DPDLVEDELIPKLKQLLSDKDPSVVSAA 172 (526)
T ss_dssp -----------------HHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CHCCHHGGHHHHHHHHTTHSSHHHHHHH
T ss_pred -----------------HHHHHHHHhcCCchHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHhhhccCCcchhHHHH
Confidence 123466778899999999999999999874 2332333 79999999999999999999
Q ss_pred HHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--c--hhhHHHHHHHHhhccCChhHHH
Q 000834 166 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--L--DKMVPYVTTALTDAKLGAEGRK 241 (1263)
Q Consensus 166 L~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~--l--~~ll~~l~~~L~~kk~~p~vR~ 241 (1263)
+.++..+ +.-...+......++..+...+++..+.++..+...+..+..... . ..+++.+...+.+. ++.+.-
T Consensus 173 ~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~--~~~V~~ 249 (526)
T PF01602_consen 173 LSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSS--SPSVVY 249 (526)
T ss_dssp HHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcc--ccHHHH
Confidence 9999988 211122234555556655566699999999999888887664322 2 34777787777765 478888
Q ss_pred HHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcC
Q 000834 242 DLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 321 (1263)
Q Consensus 242 e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~ 321 (1263)
++.+.+....... ......+.++...|.+++.+||..|..++..+..... +.+. . ...++..++...
T Consensus 250 e~~~~i~~l~~~~---~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~-----~~v~--~---~~~~~~~l~~~~ 316 (526)
T PF01602_consen 250 EAIRLIIKLSPSP---ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP-----PAVF--N---QSLILFFLLYDD 316 (526)
T ss_dssp HHHHHHHHHSSSH---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH-----HHHG--T---HHHHHHHHHCSS
T ss_pred HHHHHHHHhhcch---HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc-----hhhh--h---hhhhhheecCCC
Confidence 8887776443211 1345667778889999999999999988887765541 1111 0 001111221000
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccc
Q 000834 322 ASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 401 (1263)
Q Consensus 322 ~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~ 401 (1263)
+... ...++..+
T Consensus 317 ---------------------------------------------------d~~I--------------r~~~l~lL--- 328 (526)
T PF01602_consen 317 ---------------------------------------------------DPSI--------------RKKALDLL--- 328 (526)
T ss_dssp ---------------------------------------------------SHHH--------------HHHHHHHH---
T ss_pred ---------------------------------------------------ChhH--------------HHHHHHHH---
Confidence 0000 00001110
Q ss_pred cCCCchhHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHH
Q 000834 402 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKV 481 (1263)
Q Consensus 402 f~~p~~e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~ 481 (1263)
+.-..++.++.+-..+..++. -..|-.-|.+++..|.............++|.+++.+.. .+..+...+
T Consensus 329 ~~l~~~~n~~~Il~eL~~~l~-------~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~----~~~~~~~~~ 397 (526)
T PF01602_consen 329 YKLANESNVKEILDELLKYLS-------ELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI----SGDYVSNEI 397 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHHH-------HC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC----TGGGCHCHH
T ss_pred hhcccccchhhHHHHHHHHHH-------hccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh----ccccccchH
Confidence 000112223333222322221 122444666777777666555444444556666666642 333333444
Q ss_pred HHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhcCC----cccHHHHHHhhccCChH
Q 000834 482 LEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHN-IEKVREKMRELTKQIVNFYSA----TKTLPYILEGLRSKNNR 556 (1263)
Q Consensus 482 Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~-K~~vR~~~~~il~~l~~v~~~----skv~~~ll~glksKN~r 556 (1263)
...+..++. . .....+ ..+..|++.+.+. .+.++..+--++.+....++. ..++..+.+.+..-+..
T Consensus 398 ~~~i~~ll~---~-~~~~~~----~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~ 469 (526)
T PF01602_consen 398 INVIRDLLS---N-NPELRE----KILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPE 469 (526)
T ss_dssp HHHHHHHHH---H-STTTHH----HHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhh---c-ChhhhH----HHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHH
Confidence 443333332 1 222222 2355555555432 223444444444444443332 22444455555555678
Q ss_pred hHHHHHHHHHHHHHhhcccccCccchHHHHHHhhc--CCCHHHHHHHHHHHHHH
Q 000834 557 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTA--ERDGEIRKAALNTLATG 608 (1263)
Q Consensus 557 vR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~--D~d~~VR~AAl~~l~~l 608 (1263)
+|...+..+..+..+++..-. ....++.+..+.. +.|.+||.=|...+.-+
T Consensus 470 vk~~ilt~~~Kl~~~~~~~~~-~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 470 VKLQILTALAKLFKRNPENEV-QNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHHHHHSCSTTH-HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchhh-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 888888888888877763210 1133477777777 78999999998876643
No 18
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00028 Score=85.23 Aligned_cols=274 Identities=14% Similarity=0.173 Sum_probs=169.7
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHHHHHhhHHHHhhhccCCHHHHHHHHHHHhcCCCCCCCCCccccccccccccCCCC
Q 000834 11 INLLVQVTTHFMWNSTSGLVSSLRFLRLFYFADIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 90 (1263)
Q Consensus 11 ~~~l~k~~~h~d~~VR~~ai~Ll~~ly~~iG~~l~~~l~dlkp~~l~~Le~efeK~~~~~~p~p~R~~r~~~~~~~~~~~ 90 (1263)
|-.|-|-.-..|..||..++..+..+.. =|++-+||-=+ =+..++.-.|+|...+--=. ..--+
T Consensus 15 l~~lLk~s~Spn~~~~~~~~~~leq~~~--~pdfnnYL~~I-------------L~~~~~~d~~~Rs~aGLlLK-Nnvr~ 78 (885)
T KOG2023|consen 15 LAQLLKNSQSPNSETRNNVQEKLEQFNL--FPDFNNYLIYI-------------LIRAKSEDVPTRSLAGLLLK-NNVRG 78 (885)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhc--ccchhceeeEE-------------EecccccchhHHHHhhhhHh-ccccc
Confidence 3445555556678888888888887776 36666665210 00011112344422110000 00011
Q ss_pred CCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHH
Q 000834 91 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 170 (1263)
Q Consensus 91 ~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~ 170 (1263)
.+..+|. ++..-+..+.+..+.|.+=-.|.-.---+..|++. .-++ +..++...|...|.....|....|+.+|+
T Consensus 79 ~~~~~~~-~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~--~~~~--~wpelLp~L~~~L~s~d~n~~EgA~~AL~ 153 (885)
T KOG2023|consen 79 HYNSIPS-EVLDYIKSECLHGLGDASPLIRATVGIVITTIAST--GGLQ--HWPELLPQLCELLDSPDYNTCEGAFGALQ 153 (885)
T ss_pred cccCCCh-HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecc--cccc--cchhHHHHHHHHhcCCcccccchhHHHHH
Confidence 2334444 55555667888888887765554333223333321 1121 24788899999886555577777777777
Q ss_pred HHHH----hcCchh-hhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHh------cCchhhHHHHHHHHhhccCChhH
Q 000834 171 AVAS----AMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA------VHLDKMVPYVTTALTDAKLGAEG 239 (1263)
Q Consensus 171 ~LA~----alg~~f-~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~------~~l~~ll~~l~~~L~~kk~~p~v 239 (1263)
.|++ -+..++ .+-+..++|-+++-++...+.+|..|..|++.++-. ..+|.+++.+..--.+. +|.|
T Consensus 154 KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~--~~eV 231 (885)
T KOG2023|consen 154 KICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDE--DPEV 231 (885)
T ss_pred HHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCC--CHHH
Confidence 6655 444443 467889999999999999999999999999988742 24566666655433333 6999
Q ss_pred HHHHHHHHHHHHccCCC--CCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh-cChhhhhhhhhcCCh
Q 000834 240 RKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA-GGQETIEKNLKDIQG 307 (1263)
Q Consensus 240 R~e~L~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~-vG~~~i~~~l~~L~~ 307 (1263)
|+.+..-+.-.+..... .+.+...+.-+....+|.+.+|--.|++...++... +-.+.+.+++++|=|
T Consensus 232 Rk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliP 302 (885)
T KOG2023|consen 232 RKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIP 302 (885)
T ss_pred HHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Confidence 99988777766654432 234445555566777999999999999988887744 444566667766643
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.17 E-value=0.002 Score=80.31 Aligned_cols=175 Identities=15% Similarity=0.148 Sum_probs=118.6
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchH
Q 000834 423 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 502 (1263)
Q Consensus 423 ~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ 502 (1263)
..+...|.++|+..|.-|++.|........+... ..+..+-++ + .|.+..|-.+.|++|..+.+. .
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l--~-~~~d~~Ir~~~l~lL~~l~~~----------~ 335 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFL--L-YDDDPSIRKKALDLLYKLANE----------S 335 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHH--H-CSSSHHHHHHHHHHHHHH--H----------H
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhhee--c-CCCChhHHHHHHHHHhhcccc----------c
Confidence 3477788899999999999999999877633332 333333222 2 477788989999977665542 2
Q ss_pred HHHhHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhcCCc--ccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCc
Q 000834 503 EAAVFLPCLVEKSGHN-IEKVREKMRELTKQIVNFYSAT--KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQ 579 (1263)
Q Consensus 503 ea~~~lP~LveKlGD~-K~~vR~~~~~il~~l~~v~~~s--kv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~ 579 (1263)
-+..+++.|..=+.+. -..+|..+-..+..++..++.. .+++.+++-+...+..+..+++..+..++..+.-. .
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~---~ 412 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL---R 412 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT---H
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh---h
Confidence 2455666676655333 2346666666666677766543 36666666677788889999999999998775421 2
Q ss_pred cchHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHCH
Q 000834 580 LKSLQIVASLTAE-RDGEIRKAALNTLATGYKILGE 614 (1263)
Q Consensus 580 ~k~L~~Iak~i~D-~d~~VR~AAl~~l~~ly~~~G~ 614 (1263)
...+..+...+.+ .++.++.+++-++|+......+
T Consensus 413 ~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 413 EKILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 2456666666665 8889999999999997666655
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.15 E-value=0.00058 Score=90.48 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=59.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhh
Q 000834 511 LVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLT 590 (1263)
Q Consensus 511 LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i 590 (1263)
|+.-+.|....||..+-..+. .++....++.++..++++++.+|.+.+.-|+.+ + ++..+.+.+.+.+
T Consensus 812 l~~aL~d~d~~VR~~Aa~aL~----~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~----~----~~~~a~~~L~~al 879 (897)
T PRK13800 812 ATAALRASAWQVRQGAARALA----GAAADVAVPALVEALTDPHLDVRKAAVLALTRW----P----GDPAARDALTTAL 879 (897)
T ss_pred HHHHhcCCChHHHHHHHHHHH----hccccchHHHHHHHhcCCCHHHHHHHHHHHhcc----C----CCHHHHHHHHHHH
Confidence 444455555556655333332 233445667888888899999999999888764 1 1334667788999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 000834 591 AERDGEIRKAALNTLAT 607 (1263)
Q Consensus 591 ~D~d~~VR~AAl~~l~~ 607 (1263)
.|.|+.||.+|..+|..
T Consensus 880 ~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 880 TDSDADVRAYARRALAH 896 (897)
T ss_pred hCCCHHHHHHHHHHHhh
Confidence 99999999999998863
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=98.08 E-value=0.044 Score=70.61 Aligned_cols=176 Identities=13% Similarity=0.061 Sum_probs=122.5
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
++-+.|.+.+=.+|++|+..|...+.. ..|+..++...-+.+.-.|..+.....-.+...++ .-...+-.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~------G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~----~~pelalL 105 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTM------GRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR----LQPEKALL 105 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHC------CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc----cChHHHHH
Confidence 466777787878889999988887752 12566666555555665677776666544444432 12223567
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHH
Q 000834 187 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 266 (1263)
Q Consensus 187 llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~p 266 (1263)
.+..+.+-+.|.++.||.-|+.+|-.+....-++.+++.|..++.++ +|-||+.+.-.+.+.+...+.......++.-
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~--~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADP--DPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 78888889999999999999998876543322344555566667775 6999999988888887654422122345556
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 000834 267 ASIAMTDKSSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 267 l~~~L~D~~~eVR~aA~~~L~~l~~~vG 294 (1263)
+..+|.|+++.|.-.|..+|.++...-+
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 7778999999999999999999976543
No 22
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.07 E-value=0.00087 Score=80.25 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=90.9
Q ss_pred cccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Q 000834 156 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 235 (1263)
Q Consensus 156 DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~ 235 (1263)
|....+....-+++..|+...|-.|. +..+=--+..+.+-||+-.-.+.-.++.+.|++.++++|...-.++|
T Consensus 257 ded~~~r~~g~eii~nL~~~~Gl~~~------vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~Srk- 329 (975)
T COG5181 257 DEDLKRRCMGREIILNLVYRCGLGFS------VSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRK- 329 (975)
T ss_pred CccHHHhcccHHHHHHHHHHhcccee------eeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCcc-
Confidence 44444444554555555554442221 11111123455667899999999999999999999998766555554
Q ss_pred ChhHHHHHHHHHHHHHccCC--CCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChh
Q 000834 236 GAEGRKDLFDWLSKQLTGLS--GFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 296 (1263)
Q Consensus 236 ~p~vR~e~L~~L~~~l~~~~--~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~ 296 (1263)
+|+.|-..++.....-.-.+ ..+.+.++++.+-.||.|+..-||-.+..+|..+...+|.=
T Consensus 330 Sw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Py 392 (975)
T COG5181 330 SWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPY 392 (975)
T ss_pred chhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCc
Confidence 89999888766543322222 23456777777888899999999999999999999998853
No 23
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.05 E-value=0.02 Score=70.30 Aligned_cols=263 Identities=14% Similarity=0.168 Sum_probs=176.5
Q ss_pred HHHHHhhhC-------hhhHHHHHHHHHHHHHHhhHH--HHhhhc---cCCHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 000834 14 LVQVTTHFM-------WNSTSGLVSSLRFLRLFYFAD--IKGFLA---DVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 81 (1263)
Q Consensus 14 l~k~~~h~d-------~~VR~~ai~Ll~~ly~~iG~~--l~~~l~---dlkp~~l~~Le~efeK~~~~~~p~p~R~~r~~ 81 (1263)
||.||.++= .---+.-..+.+++...+|.+ +...+. |..++-.+..-.-.+|+-
T Consensus 679 lp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~-------------- 744 (1172)
T KOG0213|consen 679 LPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIV-------------- 744 (1172)
T ss_pred hHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHH--------------
Confidence 777776641 111123456788888889865 333333 333433333322223321
Q ss_pred cccccCCCCCCCCCCccccccCCCHHHHHhc----CC--CChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhc
Q 000834 82 ESTSSVSSGGSDGLPREDISGKFTPTLVKSL----ES--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 155 (1263)
Q Consensus 82 ~~~~~~~~~~~dllprvDI~~kl~~~ll~~l----~d--k~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~ 155 (1263)
..+++.||...+-+-+++.+ .. ..=.+=..++-.+...+ ..|.+|- +..++.....+|+
T Consensus 745 -----------~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l---g~r~kpy-lpqi~stiL~rLn 809 (1172)
T KOG0213|consen 745 -----------GRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL---GGRVKPY-LPQICSTILWRLN 809 (1172)
T ss_pred -----------hccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH---hhccccc-hHHHHHHHHHHhc
Confidence 24566677666665555443 11 11223334444444444 2466775 6788888889999
Q ss_pred cccHHHHHHHHHHHHHHHHhcCch-hhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHH
Q 000834 156 DSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-------DKMVPYVT 227 (1263)
Q Consensus 156 DsN~~V~~~AL~~l~~LA~alg~~-f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l-------~~ll~~l~ 227 (1263)
+.-.+|.+.|++.++.||.-|..- -++.+..+--.+.+.+|+--+-|--.+..||.+++...|+ ..+++.|.
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 999999999999999999988643 3455666666777999999999999999999999998764 46777788
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHH---HHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhh-hhh
Q 000834 228 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK---PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK-NLK 303 (1263)
Q Consensus 228 ~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~---pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~-~l~ 303 (1263)
.-|.++ .-++...++.++...-...+.-....++.. -++..|---++++|.+|.+.++.|.+.+|.-++.. .++
T Consensus 890 PILknr--heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLln 967 (1172)
T KOG0213|consen 890 PILKNR--HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLN 967 (1172)
T ss_pred Hhhhhh--HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHh
Confidence 888876 367888888777655443332223344444 45666778889999999999999999999866555 567
Q ss_pred cCCh
Q 000834 304 DIQG 307 (1263)
Q Consensus 304 ~L~~ 307 (1263)
.|+-
T Consensus 968 nLkv 971 (1172)
T KOG0213|consen 968 NLKV 971 (1172)
T ss_pred cchH
Confidence 8873
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.016 Score=69.69 Aligned_cols=111 Identities=11% Similarity=0.141 Sum_probs=83.3
Q ss_pred HhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhc-------CCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhccccc
Q 000834 505 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFY-------SATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 577 (1263)
Q Consensus 505 ~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~-------~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~ 577 (1263)
..|++.|+.-+||+.+.||..+..++..+...+ ....+++.+...+.+.++-.+.-.+.|+...+.-+|-++.
T Consensus 207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 457788899999999999988877766554322 2234667777788899999998899999999999996654
Q ss_pred C-ccchHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHCHH
Q 000834 578 G-QLKSLQIVASLTAERDG-EIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 578 ~-~~k~L~~Iak~i~D~d~-~VR~AAl~~l~~ly~~~G~~ 615 (1263)
- -.+.|..|-+|+.|... ..+..|...-+.+.+.++..
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~ 326 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE 326 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 3 34566777888888887 57877777776666555543
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.94 E-value=0.00035 Score=92.51 Aligned_cols=244 Identities=18% Similarity=0.102 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHh-hHHHHhhhccCCHHHHHHHHHHHhcCCCCCCCCC--ccccccccc
Q 000834 7 WVLCINLLVQVTTHFMWNSTSGLVSSLRFLRLFY-FADIKGFLADVKPALLSALDAEYEKNPFEGTVVP--KKTVRASES 83 (1263)
Q Consensus 7 ~~~~~~~l~k~~~h~d~~VR~~ai~Ll~~ly~~i-G~~l~~~l~dlkp~~l~~Le~efeK~~~~~~p~p--~R~~r~~~~ 83 (1263)
...++..|.+.+.+.|+.||..|+..|+.+..-- -+.|...|.|-.+.....-=+-+.++....+..+ .......+.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~ 698 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDP 698 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCH
Confidence 4457788999999999999999999999874322 1346666655444332222111222211001111 001100000
Q ss_pred cccCCCCCCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHH
Q 000834 84 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 163 (1263)
Q Consensus 84 ~~~~~~~~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~ 163 (1263)
..-....+.+..... .-+..++..|.|++|..|.+|+..|..+- . ...|...+.|.|.-|..
T Consensus 699 --~VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--------~------~~~l~~~l~D~~~~VR~ 760 (897)
T PRK13800 699 --VVRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSVD--------D------VESVAGAATDENREVRI 760 (897)
T ss_pred --HHHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhccc--------C------cHHHHHHhcCCCHHHHH
Confidence 000000001111000 01235778899999999999998876531 1 12355678999999999
Q ss_pred HHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHH
Q 000834 164 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDL 243 (1263)
Q Consensus 164 ~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~ 243 (1263)
.++..|+.+...- ...++.++..++|..+.||.++..+|-.+.. ...+.+.+..++.+. +|.+|.++
T Consensus 761 ~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~A 827 (897)
T PRK13800 761 AVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGC---PPDDVAAATAALRAS--AWQVRQGA 827 (897)
T ss_pred HHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHH
Confidence 9988888764421 1226778888999999999999999976632 223446677888775 69999998
Q ss_pred HHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 000834 244 FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 289 (1263)
Q Consensus 244 L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l 289 (1263)
+.-|.+ ++ ....+.++..+|.|.+.+||.+|..+|+.+
T Consensus 828 a~aL~~----l~----~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 828 ARALAG----AA----ADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHh----cc----ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 877653 22 134557789999999999999999999885
No 26
>PRK09687 putative lyase; Provisional
Probab=97.92 E-value=0.00083 Score=77.03 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=146.3
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHHHH-HhhHHHHhhhccCCHHHHHHHHHHHhcCCCCCCCCCccccccccccccCCC
Q 000834 11 INLLVQVTTHFMWNSTSGLVSSLRFLRL-FYFADIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 89 (1263)
Q Consensus 11 ~~~l~k~~~h~d~~VR~~ai~Ll~~ly~-~iG~~l~~~l~dlkp~~l~~Le~efeK~~~~~~p~p~R~~r~~~~~~~~~~ 89 (1263)
++.|.+.+.|.|..||.+|+..|+.+-- -+-+.+...+.+..+.....-=.-+..+... ..+
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~--~~~--------------- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMA--KRC--------------- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--ccc---------------
Confidence 4559999999999999999998875420 0001133333344443333333223222110 000
Q ss_pred CCCCCCCccccccCCCHHHHHh-cCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHH
Q 000834 90 GGSDGLPREDISGKFTPTLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 168 (1263)
Q Consensus 90 ~~~dllprvDI~~kl~~~ll~~-l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~ 168 (1263)
...+ + +-+... +.|++|-+|..|+..|-.+... ...+ ..+++..|...+.|.+..|...++..
T Consensus 88 -------~~~a---~-~~L~~l~~~D~d~~VR~~A~~aLG~~~~~---~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~a 151 (280)
T PRK09687 88 -------QDNV---F-NILNNLALEDKSACVRASAINATGHRCKK---NPLY--SPKIVEQSQITAFDKSTNVRFAVAFA 151 (280)
T ss_pred -------hHHH---H-HHHHHHHhcCCCHHHHHHHHHHHhccccc---cccc--chHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 0000 1 122223 4889999999999988776432 1111 24567778787889999999988888
Q ss_pred HHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHH
Q 000834 169 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 248 (1263)
Q Consensus 169 l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~ 248 (1263)
|+.+ | -...++.|+..+.|....||..|..+|-.+ ..+-..+.+.|...+.+. ++.+|.++...|.
T Consensus 152 Lg~~----~------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg 217 (280)
T PRK09687 152 LSVI----N------DEAAIPLLINLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLA 217 (280)
T ss_pred Hhcc----C------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence 8643 1 134779999999999999999999999877 222346778888888876 5999999987765
Q ss_pred HHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 000834 249 KQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 289 (1263)
Q Consensus 249 ~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l 289 (1263)
+. + ....+.+++..|+|.+ ||..|.++|+.+
T Consensus 218 ~~----~----~~~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 218 LR----K----DKRVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred cc----C----ChhHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 42 2 1466777899999866 888888888764
No 27
>PRK09687 putative lyase; Provisional
Probab=97.89 E-value=0.00087 Score=76.85 Aligned_cols=219 Identities=12% Similarity=0.023 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHHHHHHHHH------HhhHHHHhh-hccCCHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000834 8 VLCINLLVQVTTHFMWNSTSGLVSSLRFLRL------FYFADIKGF-LADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 80 (1263)
Q Consensus 8 ~~~~~~l~k~~~h~d~~VR~~ai~Ll~~ly~------~iG~~l~~~-l~dlkp~~l~~Le~efeK~~~~~~p~p~R~~r~ 80 (1263)
..++..+.+++.|.|+.||..|+..||+|-. -.-+.|..+ ++|--+......=.-+..+.. +.
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~---~~------- 122 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCK---KN------- 122 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc---cc-------
Confidence 4577789999999999999999999999531 111223333 233333333222222222210 00
Q ss_pred ccccccCCCCCCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHH
Q 000834 81 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 160 (1263)
Q Consensus 81 ~~~~~~~~~~~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~ 160 (1263)
..+ +..+.+.+...+.|++|.+|..++..|..+ . -.+.+..|...+.|.|..
T Consensus 123 -------------~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~--------~---~~~ai~~L~~~L~d~~~~ 174 (280)
T PRK09687 123 -------------PLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVI--------N---DEAAIPLLINLLKDPNGD 174 (280)
T ss_pred -------------ccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc--------C---CHHHHHHHHHHhcCCCHH
Confidence 000 111223455667899999999999887432 1 245778888888999999
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHH
Q 000834 161 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR 240 (1263)
Q Consensus 161 V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR 240 (1263)
|...|+..|+.+ + ......++.|+..+.|....||.+|..+|-.+ +-...++.|...+.+. . +|
T Consensus 175 VR~~A~~aLg~~--~------~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~~~--~--~~ 238 (280)
T PRK09687 175 VRNWAAFALNSN--K------YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKELKKG--T--VG 238 (280)
T ss_pred HHHHHHHHHhcC--C------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHHcCC--c--hH
Confidence 999999888877 1 12346788899999999999999999998653 4457888999999874 2 44
Q ss_pred HHHHHHHHHHHccCCCCCchhhhHHHHHhhhc-CCCHHHHHHHHHHHHH
Q 000834 241 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT-DKSSDVRKAAEACIVE 288 (1263)
Q Consensus 241 ~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~-D~~~eVR~aA~~~L~~ 288 (1263)
..+ .+.+..++. ...++.+...++ +.++.||..|.+++..
T Consensus 239 ~~a----~~ALg~ig~----~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 239 DLI----IEAAGELGD----KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHH----HHHHHhcCC----HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 333 345555553 355666777775 8899999999988753
No 28
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=0.022 Score=72.74 Aligned_cols=399 Identities=16% Similarity=0.169 Sum_probs=230.8
Q ss_pred hhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-----hhHHHHH
Q 000834 153 RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-----KMVPYVT 227 (1263)
Q Consensus 153 rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~-----~ll~~l~ 227 (1263)
.-.|.+.+|...+.+-++.+|+.+.+ +.-...++|.+.+-..|...+||++|.+++..+.....-+ .+.+.+.
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~ 322 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLV 322 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHH
Confidence 33588999999999999999999887 4445567777778889999999999999999999987655 4445555
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhh-hhcCC
Q 000834 228 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN-LKDIQ 306 (1263)
Q Consensus 228 ~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~-l~~L~ 306 (1263)
...+++ +|.+|..+-.|....-..+++.......+.|....+.|.-.++|.++..=...+......+.+... ...+=
T Consensus 323 ~~~~d~--~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~il 400 (759)
T KOG0211|consen 323 QAVEDG--SWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSIL 400 (759)
T ss_pred HHhcCh--hHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhh
Confidence 555554 689999988887766666655323345566677778999999999998888888777664322221 11111
Q ss_pred hhHHHHHHH---HhhhcCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhh-
Q 000834 307 GPALALILE---RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL- 382 (1263)
Q Consensus 307 ~~~~~~ile---k~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~- 382 (1263)
+..+.-+.+ .++... .+.....+ +..| + .+.. ......+.
T Consensus 401 p~~~~lv~d~~~~vr~a~---a~~~~~~~--------p~~~--k-------~~ti----------------~~llp~~~~ 444 (759)
T KOG0211|consen 401 PEVQVLVLDNALHVRSAL---ASVITGLS--------PILP--K-------ERTI----------------SELLPLLIG 444 (759)
T ss_pred HHHHHHHhcccchHHHHH---hccccccC--------ccCC--c-------CcCc----------------cccChhhhh
Confidence 111111111 111000 00000000 0000 0 0000 00000000
Q ss_pred cccCCchhHHhhh----hhcccccCCCchhHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhH-H
Q 000834 383 NVKDSNKEDRERM----VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-E 457 (1263)
Q Consensus 383 ~~~~~~k~~~~~~----~~~kw~f~~p~~e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~-~ 457 (1263)
++++.-..-+..+ ....-..+.++ ++.+.+...+.+.+ +. -...|+.|++.++.+-....+.+.... +
T Consensus 445 ~l~de~~~V~lnli~~ls~~~~v~~v~g---~~~~s~slLp~i~e-l~---~d~~wRvr~ail~~ip~la~q~~~~~~~~ 517 (759)
T KOG0211|consen 445 NLKDEDPIVRLNLIDKLSLLEEVNDVIG---ISTVSNSLLPAIVE-LA---EDLLWRVRLAILEYIPQLALQLGVEFFDE 517 (759)
T ss_pred hcchhhHHHHHhhHHHHHHHHhccCccc---chhhhhhhhhhhhh-hc---cchhHHHHHHHHHHHHHHHHhhhhHHhhH
Confidence 0101000000000 00000111112 22333333332222 11 112799999999998777655442221 1
Q ss_pred -HHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Q 000834 458 -VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNF 536 (1263)
Q Consensus 458 -~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v 536 (1263)
...++..| +.|.-..+-..+...+..++..++ .++.....+|-++.-.|+..=.+|-.+-..+..+..+
T Consensus 518 ~~~~l~~~~----l~d~v~~Ir~~aa~~l~~l~~~~G------~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v 587 (759)
T KOG0211|consen 518 KLAELLRTW----LPDHVYSIREAAARNLPALVETFG------SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV 587 (759)
T ss_pred HHHHHHHhh----hhhhHHHHHHHHHHHhHHHHHHhC------cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH
Confidence 12233333 245556677777777777776554 2334456778888888886556787777777788888
Q ss_pred cCCcc----cHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000834 537 YSATK----TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGY 609 (1263)
Q Consensus 537 ~~~sk----v~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly 609 (1263)
++... +++.+.+..++-++-+|...+..+..++.---..+.. --.++..-.+..|.|.+||-.|+.+++.+-
T Consensus 588 ~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~-~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 588 LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD-EEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH-HHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 87765 4455555567889999999999887776543322211 112255566667999999999999888763
No 29
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.001 Score=74.85 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=138.7
Q ss_pred HHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHH
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 504 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea 504 (1263)
...+|.|.||..-++||..|.....-+.+.....+.-++-.++.-++..+.+|...++-.+..+|..+... + +.+.
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~---i-~~~l 168 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS---I-DQEL 168 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---H-HHHH
Confidence 56789999999999999999988877776666666666666677788889999999888888898877643 2 3367
Q ss_pred HhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccC-c-cch
Q 000834 505 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG-Q-LKS 582 (1263)
Q Consensus 505 ~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~-~-~k~ 582 (1263)
..++-.|..|-++.|-=||+.+...+..|.....|.++++.|..++++.|+++|.-...-..+++.+.|+.-.. + .+.
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHH
Confidence 78888899999999989999999999999999999999999999999999999886555555667676632110 1 122
Q ss_pred H-HHHHHhhcCCCHHHHHHHHHHHH
Q 000834 583 L-QIVASLTAERDGEIRKAALNTLA 606 (1263)
Q Consensus 583 L-~~Iak~i~D~d~~VR~AAl~~l~ 606 (1263)
+ +.+.....|+=+.+|.+|-..+.
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~ 273 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRL 273 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHH
Confidence 2 55566777888888877765544
No 30
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.57 E-value=0.00067 Score=65.18 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000834 162 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 217 (1263)
Q Consensus 162 ~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~ 217 (1263)
...+|-+|+.++.++++.+.+|...++|++|.+|.|+...||.+|.++|..+.+..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~ 58 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA 58 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999887765
No 31
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.53 E-value=0.09 Score=73.34 Aligned_cols=417 Identities=14% Similarity=0.111 Sum_probs=249.8
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchh-hhhhhchHH
Q 000834 111 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV-EKSSKGVLS 189 (1263)
Q Consensus 111 ~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f-~~~~~~llp 189 (1263)
.+...+=..+.++...|..++...+..++.-.-...+..|-..|...+..++..|+.+++.|+.+-...- .---...+|
T Consensus 412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP 491 (2102)
T PLN03200 412 LITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIP 491 (2102)
T ss_pred hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 3344556788888888887774211111100001235666666777889999999999999876432211 112247899
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhc-C----c--hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhh
Q 000834 190 DILKCLGDNKKHMRECTLTVLDAWLAAV-H----L--DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 262 (1263)
Q Consensus 190 ~lL~kl~DkK~~VR~aa~~aL~a~~~~~-~----l--~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ 262 (1263)
.+++-|...+..+++.|..+|..+..+. + + ..+++.|...|.+. .+++|..++.-|...+.... ..
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d-----~~ 564 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTAD-----AA 564 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccc-----hh
Confidence 9999999999999999999988776421 1 1 24566777778765 58888888766766654322 23
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCCCCCCCCCCCCC
Q 000834 263 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSAS 342 (1263)
Q Consensus 263 ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk~~~~~s 342 (1263)
.+++++..|...++.+...+..+++.+......+.+..... ....-+..+.+-.+. +
T Consensus 565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~-~~~ggL~~Lv~LL~s-g--------------------- 621 (2102)
T PLN03200 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGS-AANDALRTLIQLLSS-S--------------------- 621 (2102)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhh-hccccHHHHHHHHcC-C---------------------
Confidence 45778888888888899888888888876655443222110 000111111111110 0
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHHHHHHHHHhhhh
Q 000834 343 NGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR 422 (1263)
Q Consensus 343 ~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~~ 422 (1263)
+. . .+..+. ..+ +++..-+.+..+.+-. ...++
T Consensus 622 --------------------s~-~----ikk~Aa--~iL------------------snL~a~~~d~~~avv~--agaIp 654 (2102)
T PLN03200 622 --------------------KE-E----TQEKAA--SVL------------------ADIFSSRQDLCESLAT--DEIIN 654 (2102)
T ss_pred --------------------CH-H----HHHHHH--HHH------------------HHHhcCChHHHHHHHH--cCCHH
Confidence 00 0 000000 000 0111223333322111 12233
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHHhccccchhhH-HHHH-HHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcc
Q 000834 423 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-EVLD-ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLT 500 (1263)
Q Consensus 423 ~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~-~~lD-lllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~ls 500 (1263)
-++..|.+.+++.+.++...|............ ...+ -.++.+..-+.+.+..+...+++.|..++..- + .-.
T Consensus 655 -PLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e---~~~ 729 (2102)
T PLN03200 655 -PCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-E---VAA 729 (2102)
T ss_pred -HHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-h---HHH
Confidence 378888999999999999998887755433321 1111 23444444557888899999998777665421 1 111
Q ss_pred hHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccH-HHH---------HHhhccCChHhH--HHHHHHHHHH
Q 000834 501 ESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTL-PYI---------LEGLRSKNNRTR--IECVDLVGFL 568 (1263)
Q Consensus 501 d~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~-~~l---------l~glksKN~rvR--~ecL~~L~~l 568 (1263)
+.-..-.+|.|++-+.+..+..|+.+-.++.++|..++...++ .++ ++-|++-|.+.- .+.|+.|..+
T Consensus 730 ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l 809 (2102)
T PLN03200 730 EALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALL 809 (2102)
T ss_pred HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 1112345899998887777789999888888999888876644 332 233555555443 4588888777
Q ss_pred HHh-hcccccC--------ccchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000834 569 IDH-HGAEISG--------QLKSLQIVASLTAERDGEIRKAALNTLATGY 609 (1263)
Q Consensus 569 I~~-~G~~v~~--------~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly 609 (1263)
... +|..... .+..|..+..|+++.+|.|-+.|+..|..+.
T Consensus 810 ~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~ 859 (2102)
T PLN03200 810 ARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLC 859 (2102)
T ss_pred HhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 763 3332211 1234667778889999999999999998773
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=97.46 E-value=0.54 Score=60.90 Aligned_cols=181 Identities=12% Similarity=0.082 Sum_probs=119.7
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 106 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 106 ~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
..+.+.+.|++=-+||.|.-.+.++... ++.+.+ -.++...|...+.|.|..|+..|+.++..+...-+..+ ....
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~-~pelv~--~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~ 218 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQLFY--QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSN 218 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh-Cccccc--ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHH
Confidence 3456778899999999999999998763 233322 13466778788899999999999999999976544334 2345
Q ss_pred chHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC--Cc-h
Q 000834 186 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PD-A 260 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~--~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~--~~-~ 260 (1263)
..+..++..+.+-...-+-.+.++|..+.-.. ....+++.+...|.|. |+-|--++.+.+.......... .. .
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~--N~AVVl~Aik~il~l~~~~~~~~~~~~~ 296 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQ--NPAVVMGAIKVVANLASRCSQELIERCT 296 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 56677888888888887777776664422111 1245777777778876 5778778777665544322110 00 1
Q ss_pred hhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 000834 261 AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 293 (1263)
Q Consensus 261 ~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~v 293 (1263)
..+..|++.. ..+.+++|-.+...+..+....
T Consensus 297 ~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 297 VRVNTALLTL-SRRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC
Confidence 1222444444 5577899999988877666543
No 33
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.83 Score=57.37 Aligned_cols=433 Identities=13% Similarity=0.160 Sum_probs=240.1
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCch-hhhhhhchHHHHHH
Q 000834 115 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILK 193 (1263)
Q Consensus 115 k~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~-f~~~~~~llp~lL~ 193 (1263)
.+|..-+.|--=|.=+.......|.| -++..++.-+...|..-...|.-+.|.+-.+-.+. ..+++...+|.++.
T Consensus 338 DdWnp~kAAg~CL~l~A~~~~D~Iv~----~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~ 413 (859)
T KOG1241|consen 338 DDWNPAKAAGVCLMLFAQCVGDDIVP----HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN 413 (859)
T ss_pred ccCcHHHHHHHHHHHHHHHhcccchh----hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence 46999998866444333322223433 46677777787777777777777777777766554 56889999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHhhccCChhHHHHHH-HH--HHHHHccCCCC----C
Q 000834 194 CLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALTDAKLGAEGRKDLF-DW--LSKQLTGLSGF----P 258 (1263)
Q Consensus 194 kl~DkK~~VR~aa~~aL~a~~~~~~--------l~~ll~~l~~~L~~kk~~p~vR~e~L-~~--L~~~l~~~~~~----~ 258 (1263)
-+.|+.-.||+.+.-++..+++.+. +..++..+..+|.+. |++-..+. .+ |++........ .
T Consensus 414 lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De---Prva~N~CWAf~~Laea~~eA~~s~~qt~ 490 (859)
T KOG1241|consen 414 LMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE---PRVASNVCWAFISLAEAAYEAAVSNGQTD 490 (859)
T ss_pred HhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC---chHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999988653 344556666666653 76554432 22 33333322211 1
Q ss_pred chhhhHHHHHhhh------cC-CCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCC
Q 000834 259 DAAHLLKPASIAM------TD-KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 331 (1263)
Q Consensus 259 ~~~~ll~pl~~~L------~D-~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~s 331 (1263)
...++..+++..| .| ...+.|.+|+++|.+++++... .+.+.+-++-.. +++++......+.
T Consensus 491 ~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~-~vy~~v~~~~l~----il~kl~q~i~~~~------ 559 (859)
T KOG1241|consen 491 PATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD-DVYPMVQKLTLV----ILEKLDQTISSQI------ 559 (859)
T ss_pred ccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHH----HHHHHHHHHHHHh------
Confidence 1223444444433 33 3448999999999999998773 344443322222 2333332110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHH
Q 000834 332 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQ 411 (1263)
Q Consensus 332 k~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve 411 (1263)
-+ ...+ .+-...++ +.- . --....+| +.+-..+..|
T Consensus 560 -----------------------------l~---~~dr-~q~~eLQs--~Lc---~----~Lq~i~rk--~~~~~~~~~d 595 (859)
T KOG1241|consen 560 -----------------------------LS---LADR-AQLNELQS--LLC---N----TLQSIIRK--VGSDIREVSD 595 (859)
T ss_pred -----------------------------cc---HhhH-HHHHHHHH--HHH---H----HHHHHHHH--ccccchhHHH
Confidence 00 0000 00000110 000 0 00000111 1111112223
Q ss_pred HHHHHHHhhhhHHHHhhhcCc--cHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhh-cCchHHHHHHHHHhHHHH
Q 000834 412 ELENDMMKYFREDLHRRLLST--DFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPEL 488 (1263)
Q Consensus 412 ~L~~q~~~~~~~~l~~~Lfs~--dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl-~DtN~qV~~k~Le~L~~l 488 (1263)
++-..+. ++|.+ .--.+.+|+-.+...++.-++.+..+...+..|+..++ .-...||...+.-++..+
T Consensus 596 ~iM~lfl---------ri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl 666 (859)
T KOG1241|consen 596 QIMGLFL---------RIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDL 666 (859)
T ss_pred HHHHHHH---------HHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 3222211 22222 11234566666666666556667778888889998888 456788998888888888
Q ss_pred HHHHhhcCCCcchHHHHhHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHhcCC--cccHHHHHHhhccC------C----
Q 000834 489 FDTLRDEGYSLTESEAAVFLPCLVEKSGHNI--EKVREKMRELTKQIVNFYSA--TKTLPYILEGLRSK------N---- 554 (1263)
Q Consensus 489 ~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K--~~vR~~~~~il~~l~~v~~~--skv~~~ll~glksK------N---- 554 (1263)
.+.|.+.--.+ +..++..|+.-++.+. -.|+-.+-.++..|...++. .+.+.+++.-+++- +
T Consensus 667 ~raL~~~i~py----~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~ 742 (859)
T KOG1241|consen 667 ARALEDDILPY----CDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDS 742 (859)
T ss_pred HHHHHhhhhhH----HHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCccc
Confidence 88776553343 3455666666655432 01122233333334443333 34555666544211 1
Q ss_pred -----hHhHHHHHHHHHHHHHhhcccccC-ccc-hHHHH----HHhhcCC--CHHHHHHHHHHHHHHHHHHCHHHHHHhc
Q 000834 555 -----NRTRIECVDLVGFLIDHHGAEISG-QLK-SLQIV----ASLTAER--DGEIRKAALNTLATGYKILGEDIWRYVG 621 (1263)
Q Consensus 555 -----~rvR~ecL~~L~~lI~~~G~~v~~-~~k-~L~~I----ak~i~D~--d~~VR~AAl~~l~~ly~~~G~~l~~~l~ 621 (1263)
.+.|..||+....++.-++..... ... .++.| .+.-+|. +..+-.+|+-++|.+...+|+++.+++-
T Consensus 743 ~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 743 MVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 256899999998888877632110 111 12333 3333333 3467778999999999999999888774
Q ss_pred C
Q 000834 622 K 622 (1263)
Q Consensus 622 ~ 622 (1263)
+
T Consensus 823 ~ 823 (859)
T KOG1241|consen 823 D 823 (859)
T ss_pred c
Confidence 3
No 34
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.33 Score=60.78 Aligned_cols=416 Identities=16% Similarity=0.195 Sum_probs=223.0
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchh-HHHHHHhhhccccHHHHHHHHHHHHH-------HHHhcCchhh
Q 000834 110 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNLVMATLITLGA-------VASAMGPAVE 181 (1263)
Q Consensus 110 ~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~e-L~~aLk~rL~DsN~~V~~~AL~~l~~-------LA~alg~~f~ 181 (1263)
+.-.+.+-+.|..|+.=|.+|..-...++++- +++ |+..=-+++...|-.|+.+|++.-+. |+-..|..++
T Consensus 224 Eatq~~d~~i~~aa~~ClvkIm~LyY~~m~~y-M~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 224 EATQSPDEEIQVAAFQCLVKIMSLYYEFMEPY-MEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred ecccCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456678999999999999987433455553 344 66655666778889999999874442 2223333333
Q ss_pred hh------------hhchHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhhccCChhH
Q 000834 182 KS------------SKGVLSDILKCLGDNK-------KHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEG 239 (1263)
Q Consensus 182 ~~------------~~~llp~lL~kl~DkK-------~~VR~aa~~aL~a~~~~~~---l~~ll~~l~~~L~~kk~~p~v 239 (1263)
++ +..++|.+|+.|..+. =++..||-.||..++.+++ +..++++|.+.+.+ ++|+-
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~--pdwr~ 380 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN--PDWRN 380 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC--cchhh
Confidence 33 3488999998874322 2578899999999999887 23455555555544 57988
Q ss_pred HHHHHHHHHHHHccCCCCCchh----hhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHH
Q 000834 240 RKDLFDWLSKQLTGLSGFPDAA----HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 315 (1263)
Q Consensus 240 R~e~L~~L~~~l~~~~~~~~~~----~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ile 315 (1263)
|....-.+...+..-. ...++ ..++.++..+.|++--||+.+.-+++.++.++.+...... +-..++...++
T Consensus 381 reaavmAFGSIl~gp~-~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~---~l~~~l~~l~~ 456 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPE-PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQE---LLQSKLSALLE 456 (859)
T ss_pred hhHHHHHHHhhhcCCc-hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHh---hhhHHHHHHHH
Confidence 8876544444443211 11223 3334477788999999999999999999988874322221 11122222223
Q ss_pred HhhhcCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhh
Q 000834 316 RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERM 395 (1263)
Q Consensus 316 k~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~ 395 (1263)
-+.. .|.-. +.. ..+-. + -.+..-.
T Consensus 457 gL~D--------ePrva--~N~-----------------CWAf~------~----Laea~~e------------------ 481 (859)
T KOG1241|consen 457 GLND--------EPRVA--SNV-----------------CWAFI------S----LAEAAYE------------------ 481 (859)
T ss_pred Hhhh--------CchHH--HHH-----------------HHHHH------H----HHHHHHH------------------
Confidence 2211 00000 000 00000 0 0000000
Q ss_pred hhcccccCCCchhHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchH
Q 000834 396 VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNT 475 (1263)
Q Consensus 396 ~~~kw~f~~p~~e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~ 475 (1263)
....|.-+.|-.-+.+.+-..+.. ..++-.-.+...|.+|.+.|.+.+...++...+...-+.-++..++..
T Consensus 482 A~~s~~qt~~~t~~y~~ii~~Ll~-----~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q--- 553 (859)
T KOG1241|consen 482 AAVSNGQTDPATPFYEAIIGSLLK-----VTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ--- 553 (859)
T ss_pred hccCCCCCCccchhHHHHHHHHHh-----hccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH---
Confidence 000000000000111111111110 111222356788999999999998776554333222222222222211
Q ss_pred HHHH-HHHHhHHHHHHHHhhcCCCcchHH--HHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhc-
Q 000834 476 TCLL-KVLEFLPELFDTLRDEGYSLTESE--AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLR- 551 (1263)
Q Consensus 476 qV~~-k~Le~L~~l~~~L~~~~~~lsd~e--a~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glk- 551 (1263)
++. ..|. +.+. ..+.+-+ ....|..++-|+|.. +|+-+..++..+. .-+.
T Consensus 554 -~i~~~~l~--------~~dr-~q~~eLQs~Lc~~Lq~i~rk~~~~---~~~~~d~iM~lfl-------------ri~~s 607 (859)
T KOG1241|consen 554 -TISSQILS--------LADR-AQLNELQSLLCNTLQSIIRKVGSD---IREVSDQIMGLFL-------------RIFES 607 (859)
T ss_pred -HHHHHhcc--------HhhH-HHHHHHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHH-------------HHHcC
Confidence 111 1111 0000 0111111 123445567778773 3333333332222 2222
Q ss_pred cCChHhHHHHHHHHHHHHHhhcccccCccchH-HHHHHhh-cCCCHHHHHHHHHHHHHHHHHHCHHHHHHhc
Q 000834 552 SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLT-AERDGEIRKAALNTLATGYKILGEDIWRYVG 621 (1263)
Q Consensus 552 sKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L-~~Iak~i-~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l~ 621 (1263)
.++.-+..+.+-.++.+++..|.....-...+ |++...+ +-.+--|=.+|+.++|.+.+.+++++..|-.
T Consensus 608 ~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d 679 (859)
T KOG1241|consen 608 KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD 679 (859)
T ss_pred CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 37777889999999999998885422111123 6666666 5678889999999999999999999888753
No 35
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.26 Score=65.64 Aligned_cols=188 Identities=16% Similarity=0.235 Sum_probs=133.5
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHH
Q 000834 115 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 194 (1263)
Q Consensus 115 k~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~k 194 (1263)
.-|.-|+-|.-.+.+|..++..+++|. ++.|+.-|=..=-|.+.+|+..=..|-+.|..--..-++.|...++.-+|..
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~-l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPY-LKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhH-HHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 459999999999999999876778886 6888887777667999999877667778777766666899999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHH-------HHHHhhccCChhHHHH---HHHHHHHHHccCCC---CCchh
Q 000834 195 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYV-------TTALTDAKLGAEGRKD---LFDWLSKQLTGLSG---FPDAA 261 (1263)
Q Consensus 195 l~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l-------~~~L~~kk~~p~vR~e---~L~~L~~~l~~~~~---~~~~~ 261 (1263)
|+++-=.||+|+.-||..++..=..+.+.+.+ ...|.+-| --+|.. +..+|.+..-.... ...-+
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIK--EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIK--ESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 99999999999999999998765544444333 23343322 235554 33344433332221 22333
Q ss_pred hhHHHHHhh-----hcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCC
Q 000834 262 HLLKPASIA-----MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 306 (1263)
Q Consensus 262 ~ll~pl~~~-----L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~ 306 (1263)
..+..+..+ +..+..+||..+...+..+.++-|. .+.+++++|-
T Consensus 1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~-~lkP~~~~LI 1174 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKLI 1174 (1702)
T ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh-hhcchhhHHH
Confidence 444444443 3577889999999999999988885 4555555554
No 36
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.61 E-value=0.061 Score=62.70 Aligned_cols=184 Identities=19% Similarity=0.175 Sum_probs=118.8
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCC----CchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcC--chh
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAV 180 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~----~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg--~~f 180 (1263)
+.++.+.+|+-+.|.+||+.+..++.. +..+. ....|+..+.+.++-....=+..|+.+++.++-.+| .+.
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~---~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS---RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 567888999999999999999999974 22221 246788888887865555777889999999999877 666
Q ss_pred hhhhhchHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhc--CchhhH---HHHH---H--HHh-hcc-------CChhHH
Q 000834 181 EKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAV--HLDKMV---PYVT---T--ALT-DAK-------LGAEGR 240 (1263)
Q Consensus 181 ~~~~~~llp~lL~kl~DkK~--~VR~aa~~aL~a~~~~~--~l~~ll---~~l~---~--~L~-~kk-------~~p~vR 240 (1263)
+.....+.|.|...+.|.-. .+|.++..||-.+.-.+ +.+.+. +.+. . ... +.+ +++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 77778888888888877654 46667766665543322 333222 2222 1 111 111 123444
Q ss_pred HHH-HHHHHHHHccCCC--CCc-hhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 000834 241 KDL-FDWLSKQLTGLSG--FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 241 ~e~-L~~L~~~l~~~~~--~~~-~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG 294 (1263)
..+ -.| .=.+...+. ... ....++.+..+|+..+.+||-+|-+++.-++....
T Consensus 204 ~aAL~aW-~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAW-ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 443 344 112222222 112 23344557888999999999999999998876655
No 37
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.52 E-value=2 Score=60.66 Aligned_cols=249 Identities=14% Similarity=0.100 Sum_probs=158.3
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHHH-------HHhh-----HHHHhhhccCCHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000834 11 INLLVQVTTHFMWNSTSGLVSSLRFLR-------LFYF-----ADIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 78 (1263)
Q Consensus 11 ~~~l~k~~~h~d~~VR~~ai~Ll~~ly-------~~iG-----~~l~~~l~dlkp~~l~~Le~efeK~~~~~~p~p~R~~ 78 (1263)
++.|+.++...+..++..++.-+..|. ..|+ +.|..+|..-++.++..-=..+..+.. +... .|.
T Consensus 406 ik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~-~nde-nr~- 482 (2102)
T PLN03200 406 KKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD-EVDE-SKW- 482 (2102)
T ss_pred hhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHH-HHH-
Confidence 344677777777999999888876666 3333 345666665555555444344433321 0000 000
Q ss_pred ccccccccCCCCCCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCc--hhHHHHHHhhhcc
Q 000834 79 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT--GELFGGLRGRLYD 156 (1263)
Q Consensus 79 r~~~~~~~~~~~~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~--~eL~~aLk~rL~D 156 (1263)
.. .+.| -|| -+.+-|.+.+-+.|++|...|-.+... ..-+..- + ...+..|.+.|.+
T Consensus 483 ----aI--ieaG------------aIP-~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~i-V~~aGAIppLV~LL~s 541 (2102)
T PLN03200 483 ----AI--TAAG------------GIP-PLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRAC-VESAGAVPALLWLLKN 541 (2102)
T ss_pred ----HH--HHCC------------CHH-HHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHH-HHHCCCHHHHHHHHhC
Confidence 00 0111 133 477888899999999999998887741 0111000 1 2344556666777
Q ss_pred ccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hhhHHHH
Q 000834 157 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DKMVPYV 226 (1263)
Q Consensus 157 sN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l----------~~ll~~l 226 (1263)
.+..++..|+.+|..|+..-... .+++++.-|....+.++..+..+|..++....- ...++.|
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~L 614 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTL 614 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHH
Confidence 78899999999999987753322 336666767766677888888887666553221 2356677
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHccCCCC---CchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 227 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 227 ~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
..-+.+. +..+|+.+...|...+...... ......++|++..|.+.+.+||+.|..+|..+...
T Consensus 615 v~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 615 IQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred HHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC
Confidence 7777776 5889999885565555533221 12356788999999999999999999999998873
No 38
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.39 Score=64.09 Aligned_cols=128 Identities=19% Similarity=0.193 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--C----chhhHHHHHHHHhhcc
Q 000834 161 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--H----LDKMVPYVTTALTDAK 234 (1263)
Q Consensus 161 V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~--~----l~~ll~~l~~~L~~kk 234 (1263)
-...|.--++.|++..|...+||++.++|-+.--=-|-.+.|+++-..--++++.-. - +..++.++...|.++
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~k- 1051 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSK- 1051 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccch-
Confidence 334555577888888899999999999999998777888888877665555554211 1 345667777777776
Q ss_pred CChhHHHHHHHHHHHHHccCCCC---CchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 235 LGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 235 ~~p~vR~e~L~~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
-|++|+...--|...+...+.. ..+.++-..++..++|-...||+||..+...+-
T Consensus 1052 -ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1052 -EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred -hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999988888888764421 123344445677889999999999988766544
No 39
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=1.7 Score=54.87 Aligned_cols=351 Identities=18% Similarity=0.184 Sum_probs=198.6
Q ss_pred HHHHhhhccccHHHHHHHHH-HHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-ch-hhHH
Q 000834 148 GGLRGRLYDSNKNLVMATLI-TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LD-KMVP 224 (1263)
Q Consensus 148 ~aLk~rL~DsN~~V~~~AL~-~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~-l~-~ll~ 224 (1263)
.-|+..|...+-.....|++ +|+.||+|-. +..++|.+++...-++.-|+.-+--=|-.+++.-. +. -=+.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIn 111 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSIN 111 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHH
Confidence 34555454444457777776 7777777633 78899999999999999999888877777776432 11 1135
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHH-HHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhh
Q 000834 225 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 303 (1263)
Q Consensus 225 ~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~-pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~ 303 (1263)
.+..+|.++ |+.+|..+|+.|... + .+-..+++. .|-.|..|.++-||+.|.-++..+|..=.
T Consensus 112 tfQk~L~Dp--N~LiRasALRvlSsI----R-vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--------- 175 (968)
T KOG1060|consen 112 TFQKALKDP--NQLIRASALRVLSSI----R-VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--------- 175 (968)
T ss_pred HHHhhhcCC--cHHHHHHHHHHHHhc----c-hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh---------
Confidence 677888886 599999998776532 2 112223322 25668899999999999999999885422
Q ss_pred cCChhHHHHHHHHhhhcCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhc
Q 000834 304 DIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 383 (1263)
Q Consensus 304 ~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~ 383 (1263)
.....++|-++.=..... +. . -| .+..
T Consensus 176 ----e~k~qL~e~I~~LLaD~s---------pl--------------------V---vg----------------sAv~- 202 (968)
T KOG1060|consen 176 ----EQKDQLEEVIKKLLADRS---------PL--------------------V---VG----------------SAVM- 202 (968)
T ss_pred ----hhHHHHHHHHHHHhcCCC---------Cc--------------------c---hh----------------HHHH-
Confidence 222233333321100000 00 0 00 0000
Q ss_pred ccCCchhHHhhhhhcccccCCCchhHHHHHHHHHHhhhhHHHHhhhcC-ccHHHHHHHHHHHHHhcccc-----------
Q 000834 384 VKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS-TDFKKQVDGLEMLQKALPSI----------- 451 (1263)
Q Consensus 384 ~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~~~~l~~~Lfs-~dwk~Rl~ale~L~~~l~~~----------- 451 (1263)
.|++.=+|.++.+... +.+ +...|.. .+|- .+=.|++|..+....
T Consensus 203 -----------------AF~evCPerldLIHkn----yrk-lC~ll~dvdeWg-QvvlI~mL~RYAR~~l~~P~~~~~~~ 259 (968)
T KOG1060|consen 203 -----------------AFEEVCPERLDLIHKN----YRK-LCRLLPDVDEWG-QVVLINMLTRYARHQLPDPTVVDSSL 259 (968)
T ss_pred -----------------HHHHhchhHHHHhhHH----HHH-HHhhccchhhhh-HHHHHHHHHHHHHhcCCCcccccccc
Confidence 1333233444433322 122 1122222 2343 233455555543211
Q ss_pred ---c--------------h-hhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHH
Q 000834 452 ---R--------------K-DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 513 (1263)
Q Consensus 452 ---~--------------~-~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~Lve 513 (1263)
+ + .....++++++-....++..|..|+..|.+.+-++... .+...|+-.|+-
T Consensus 260 e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~----------~~~~~i~kaLvr 329 (968)
T KOG1060|consen 260 EDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK----------NQVTKIAKALVR 329 (968)
T ss_pred ccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH----------HHHHHHHHHHHH
Confidence 0 0 01234778898888889999999999998855443321 134455555655
Q ss_pred HhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhh--ccCCh-HhHHHHHHHHHHHHHhhcccccCccchHHHHHHhh
Q 000834 514 KSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL--RSKNN-RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLT 590 (1263)
Q Consensus 514 KlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~gl--ksKN~-rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i 590 (1263)
.+-.++ .++.-+-..+..|+..- ..+|.--++.+ .++.| .+..=-|+.|..++.+-.+. ..|++..-.|
T Consensus 330 LLrs~~-~vqyvvL~nIa~~s~~~--~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-----~ILrE~q~YI 401 (968)
T KOG1060|consen 330 LLRSNR-EVQYVVLQNIATISIKR--PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-----EILRELQTYI 401 (968)
T ss_pred HHhcCC-cchhhhHHHHHHHHhcc--hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-----HHHHHHHHHH
Confidence 543322 23333333333333222 22444333332 44444 45666777887777654422 3557888888
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHCH
Q 000834 591 AERDGEIRKAALNTLATGYKILGE 614 (1263)
Q Consensus 591 ~D~d~~VR~AAl~~l~~ly~~~G~ 614 (1263)
.+.|..+-.+|+.++|-+...+|.
T Consensus 402 ~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 402 KSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred hcCchhHHHHHHHHHHHHHHhhCc
Confidence 888888989999999988766654
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.44 Score=58.34 Aligned_cols=366 Identities=15% Similarity=0.131 Sum_probs=204.7
Q ss_pred CHHHHHhcCCCChhHHHHHHHHHHHHHHH-hccCCCCCCchhHHHHHHhhh-ccccHHHHHHHHHHHHHHHHhcCchhhh
Q 000834 105 TPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEK 182 (1263)
Q Consensus 105 ~~~ll~~l~dk~WK~RkEaLe~L~~il~~-a~~~i~p~~~~eL~~aLk~rL-~DsN~~V~~~AL~~l~~LA~alg~~f~~ 182 (1263)
-...+.++.+.+=..+.++...+.++++. .+|.|...--..++..|-..+ .+.|..++..|.=+|..||.+--..-+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 34567788888888899999999999963 122221110023444555555 3778889999999999999876544333
Q ss_pred hhh-chHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c------hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Q 000834 183 SSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 254 (1263)
Q Consensus 183 ~~~-~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~-l------~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~ 254 (1263)
++. ..+|.++..+......|++.|.-||-.++.... + -.+++.+...+.+..+-..+|..+ |....|...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~t--W~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNAT--WTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHH--HHHHHHHcC
Confidence 333 667888999999999999999999988875432 1 123444555554432113466655 877777655
Q ss_pred C-CCC---chhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCC
Q 000834 255 S-GFP---DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 330 (1263)
Q Consensus 255 ~-~~~---~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~ 330 (1263)
+ +.+ ...++++.+..++.+.+.+|..-|.-++..+... +++.+.-.++.=--+++..++++...+ ..
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-~ne~iq~vi~~gvv~~LV~lL~~~~~~--v~------ 296 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-SNEKIQMVIDAGVVPRLVDLLGHSSPK--VV------ 296 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHccchHHHHHHHcCCCcc--cc------
Confidence 4 333 2355566678899999999998888777766533 222222222111112222222221100 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhh---------cccCCchhHHhhhhhcccc
Q 000834 331 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKDSNKEDRERMVVRRFK 401 (1263)
Q Consensus 331 sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~---------~~~~~~k~~~~~~~~~kw~ 401 (1263)
.++=+. - | +.. .| .+.+++.+. ++-....++-.+ +---|.
T Consensus 297 ----~PaLRa--i-----G-------NIv-tG-----------~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik-kEAcW~ 345 (514)
T KOG0166|consen 297 ----TPALRA--I-----G-------NIV-TG-----------SDEQTQVVINSGALPVLSNLLSSSPKESIK-KEACWT 345 (514)
T ss_pred ----cHHHhh--c-----c-------cee-ec-----------cHHHHHHHHhcChHHHHHHHhccCcchhHH-HHHHHH
Confidence 000000 0 0 000 01 112222111 111111110000 011254
Q ss_pred cCCCchhHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHH--HHHHHHHHHhhcCchHHHHH
Q 000834 402 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL--DILLRWFVLQFCKSNTTCLL 479 (1263)
Q Consensus 402 f~~p~~e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~l--Dlllk~l~lrl~DtN~qV~~ 479 (1263)
.........++.++-|..-+=+.++..|.+.+|+.|.+|.=.|.....+...+.+.++ ..+++-++-.+.-.+..++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~ 425 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIIL 425 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHH
Confidence 4322223334555555555556799999999999999999999988877765554432 12445554445446777788
Q ss_pred HHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCC
Q 000834 480 KVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 517 (1263)
Q Consensus 480 k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD 517 (1263)
.+|+.|..++.. .+....+.. .-+..++|..|-
T Consensus 426 v~Ld~l~nil~~-~e~~~~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 426 VALDGLENILKV-GEAEKNRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHH-HHHhccccc----cHHHHHHHHccC
Confidence 888888877763 222222211 234556666654
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.28 E-value=0.017 Score=55.63 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCC
Q 000834 119 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 198 (1263)
Q Consensus 119 ~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~Dk 198 (1263)
.|+.||-.|..+...-.+.+.. -+.+++..+-..+.|.+..|.-.|++++..|++..+..+-+|...++..+...+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~-~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISK-YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5889999988876531122222 146778877888999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHH
Q 000834 199 KKHMRECTLTVLDAWL 214 (1263)
Q Consensus 199 K~~VR~aa~~aL~a~~ 214 (1263)
.+.||.+| +.|+.++
T Consensus 81 d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAA-ELLDRLL 95 (97)
T ss_pred chhHHHHH-HHHHHHh
Confidence 99999988 5555543
No 42
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.14 E-value=0.22 Score=60.53 Aligned_cols=247 Identities=17% Similarity=0.160 Sum_probs=165.9
Q ss_pred HHHHHHHHHhhhChhhHHHHHHHHHHHHHH------------hhHHHHhhhccCCHHHHHHHHHHHhcCCCCCCCCCccc
Q 000834 10 CINLLVQVTTHFMWNSTSGLVSSLRFLRLF------------YFADIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 77 (1263)
Q Consensus 10 ~~~~l~k~~~h~d~~VR~~ai~Ll~~ly~~------------iG~~l~~~l~dlkp~~l~~Le~efeK~~~~~~p~p~R~ 77 (1263)
-|.++-+.+.|--++||..|.+|++.|-.. +|.-|...|+..-|..+-.|=+.+-.+-. --|+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~s-----v~~~ 679 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYS-----VHRF 679 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhh-----hhcc
Confidence 345567889999999999999998876544 44445555654444444333332211100 0111
Q ss_pred cccccccccCCCCCCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCC----chhHHHHHHhh
Q 000834 78 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGR 153 (1263)
Q Consensus 78 ~r~~~~~~~~~~~~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~----~~eL~~aLk~r 153 (1263)
++-| -|--+|+..|++ -|.++.-|+-...+.-+..|+..+...+.+.. .-+|++.|+.
T Consensus 680 -~~mq------------pPi~~ilP~ltP----ILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks- 741 (975)
T COG5181 680 -RSMQ------------PPISGILPSLTP----ILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS- 741 (975)
T ss_pred -cccC------------CchhhccccccH----hhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH-
Confidence 1100 122345444554 45667777777788878888865423332221 1345555555
Q ss_pred hccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhc
Q 000834 154 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 233 (1263)
Q Consensus 154 L~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~k 233 (1263)
-|+-+...|-+.+|.|+++.|+. .++..+++.|+-+.-.-|.+..-++..+++.|++-.+++.|.......
T Consensus 742 ---~nKeiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP 812 (975)
T COG5181 742 ---WNKEIRRNATETFGCISRAIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP 812 (975)
T ss_pred ---hhHHHHHhhhhhhhhHHhhcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc
Confidence 78999999999999999999975 678889999998888888888889999999999988888887777653
Q ss_pred cCChhHHHHHHHHHHHHHccCCC-CCchhhhHHHH-HhhhcCCCHHHHHHHHHHHHHHH
Q 000834 234 KLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPA-SIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 234 k~~p~vR~e~L~~L~~~l~~~~~-~~~~~~ll~pl-~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
+.-++..+|.-+.-.|+-.+. +.+..-.+-|+ -..|.|+++--|.-|..++-.+.
T Consensus 813 --e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 813 --EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred --hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 355777777766666654432 34566666674 55899999999999988877664
No 43
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.25 Score=64.58 Aligned_cols=201 Identities=17% Similarity=0.186 Sum_probs=137.0
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCc-hhHHHHHHhh---hccccHHHHHHHHHHHHHHHH---hcCch
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGR---LYDSNKNLVMATLITLGAVAS---AMGPA 179 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~-~eL~~aLk~r---L~DsN~~V~~~AL~~l~~LA~---alg~~ 179 (1263)
.+.+.+.+..--.|+..|.-|..++... + .+. +-++..+... ++|-|....+.|.+||-.|.. .+...
T Consensus 701 ~L~ds~qs~~~~~~~~rl~~L~~L~~~~-~----~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g 775 (1176)
T KOG1248|consen 701 SLLDSFQSSSSPAQASRLKCLKRLLKLL-S----AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDG 775 (1176)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhc-c----HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccc
Confidence 3445556677778888888888888642 1 211 2222333332 268888889999888877762 22222
Q ss_pred hhh---hhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-C------chhhHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000834 180 VEK---SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSK 249 (1263)
Q Consensus 180 f~~---~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~-~------l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~ 249 (1263)
-++ .+..+++.|-..+--....++...+-++..++... + +..+++.+...+... +++++..+++|+..
T Consensus 776 ~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikv 853 (1176)
T KOG1248|consen 776 NEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKV 853 (1176)
T ss_pred ccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 223 55566666666666666677766566666665432 1 456777777778765 59999999999999
Q ss_pred HHccCCC---CCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhh
Q 000834 250 QLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 318 (1263)
Q Consensus 250 ~l~~~~~---~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~ 318 (1263)
++..++. .+.+..++.-+...+.|.+..||.+...+|..+++.+|.+.+..+++.. ..+++.+++
T Consensus 854 lv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee----~~klL~nIR 921 (1176)
T KOG1248|consen 854 LVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEE----DMKLLTNIR 921 (1176)
T ss_pred HHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHH----HHHHHHHHH
Confidence 9887764 2233344455788889999999999999999999999999999998833 334555544
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.71 E-value=0.022 Score=55.37 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=81.4
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCc-hhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhh-
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS- 184 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~-~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~- 184 (1263)
.+++.+.+.+|..|..++..|..+.... +.....-. .+++..|.+.+.|.|..|+..++.+++.|+..-......+.
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 89 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLE 89 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 4677888999999999999999987521 11110001 25677888888899999999999999999876433333333
Q ss_pred hchHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000834 185 KGVLSDILKCLGDNKKHMRECTLTVLDAWL 214 (1263)
Q Consensus 185 ~~llp~lL~kl~DkK~~VR~aa~~aL~a~~ 214 (1263)
..+++.+++.+.+....+|+.+..+|..++
T Consensus 90 ~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 90 AGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 458999999999999999999999988764
No 45
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.64 E-value=0.26 Score=63.38 Aligned_cols=180 Identities=19% Similarity=0.168 Sum_probs=135.7
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhc-cCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 108 LVKSLESPDWKVRLESIEAVNKILEEAN-KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 108 ll~~l~dk~WK~RkEaLe~L~~il~~a~-~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
+.+...+.+|..|.+.++.+-.++.+-. ..+. ..+...+..++.|.-.-+...|...+..++...|+.+ +...
T Consensus 484 i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~----~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~ 557 (759)
T KOG0211|consen 484 IVELAEDLLWRVRLAILEYIPQLALQLGVEFFD----EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW--ARLE 557 (759)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh----HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHHH
Confidence 3344456789999999999999887522 1111 2244555667878888888899999999999999444 6667
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchh----hHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhh
Q 000834 187 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 262 (1263)
Q Consensus 187 llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~----ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ 262 (1263)
++|-+|...++..-.+|-+..-++..+++.+|-+. +++.+.....+ +.|.+|-.++..|.+.++.... +....
T Consensus 558 ~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D--~vanVR~nvak~L~~i~~~L~~-~~~~~ 634 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD--PVANVRINVAKHLPKILKLLDE-SVRDE 634 (759)
T ss_pred hhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC--CchhhhhhHHHHHHHHHhhcch-HHHHH
Confidence 89999999999888999999999999999888544 44444443344 3688999999999888876643 34566
Q ss_pred hHHHHHhhh-cCCCHHHHHHHHHHHHHHHHhcChh
Q 000834 263 LLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQE 296 (1263)
Q Consensus 263 ll~pl~~~L-~D~~~eVR~aA~~~L~~l~~~vG~~ 296 (1263)
.+.|+..+| .|.+.|||..|..+++.+.-+.=+.
T Consensus 635 ~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 635 EVLPLLETLSSDQELDVRYRAILAFGSIELSRLES 669 (759)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhh
Confidence 777766655 7999999999999999887665543
No 46
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.087 Score=62.97 Aligned_cols=190 Identities=17% Similarity=0.158 Sum_probs=134.7
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhccCCCC--CCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 108 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP--AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 108 ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p--~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
+...+.+..|+.|....--+.++.. +.+-+ ..+++++..|..+..|++.++...|+.+|+..+.++-.++..|..
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~---~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~ 298 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKR---PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT 298 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhC---cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH
Confidence 3455667899999999888888875 33333 246999999999999999999999999999999998888999999
Q ss_pred chHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhhccCChhHHHHHHHHHHHHHccCCCC
Q 000834 186 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 257 (1263)
Q Consensus 186 ~llp~lL~kl~-DkK~~VR~aa~~aL~a~~~~~~l~~ll~~-------l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~ 257 (1263)
.++-+|+-.|- +.+..|.-.++.||..+.+...-+++-++ +-+.+.+. +++.|...+.. -..+..+...
T Consensus 299 ~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~L-fg~L~~l~g~ 375 (533)
T KOG2032|consen 299 TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVL-FGALAKLAGG 375 (533)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHH-HHHHHHHcCC
Confidence 99999998765 45567888888999888876644333333 33444555 48888887633 3344333211
Q ss_pred --C-----chhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhh
Q 000834 258 --P-----DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 303 (1263)
Q Consensus 258 --~-----~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~ 303 (1263)
. ..+.-..|+.-.|+|+++-|-.|....+-.++-.++-+....++.
T Consensus 376 ~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 376 GWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred CchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1 123344566777899999988777766665554444444444443
No 47
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.50 E-value=0.35 Score=51.77 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHh
Q 000834 116 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 195 (1263)
Q Consensus 116 ~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl 195 (1263)
++..|..++..+..++... |+-+......+.++|.|.+..|...|+.++..|... ++-+.-..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 4678999999999988642 222355677888999999999999999999998764 55555667778899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhhc-------cCChhHHHHHHHHHHHHHcc
Q 000834 196 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 253 (1263)
Q Consensus 196 ~DkK~~VR~aa~~aL~a~~~~~~---l~~ll~~l~~~L~~k-------k~~p~vR~e~L~~L~~~l~~ 253 (1263)
.|..+.||+.|..++..+...-+ +...++.+...+.+. +.+..-|..++.||...+..
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998733 334444555555432 12455778888888777763
No 48
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.49 E-value=0.05 Score=50.47 Aligned_cols=86 Identities=19% Similarity=0.314 Sum_probs=63.5
Q ss_pred HHHHHHHh-CCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHH
Q 000834 508 LPCLVEKS-GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV 586 (1263)
Q Consensus 508 lP~LveKl-GD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~I 586 (1263)
||.|++.+ .|....+|..+-.++. -++...+++.+.+.++++|+.+|..++..|+.+ | ..+.++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-----~~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAAARALGRI----G-----DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-----HHHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----CHHHHHHH
Confidence 57788887 7887888876554443 334456889999999999999999999988743 3 33566777
Q ss_pred HHhhc-CCCHHHHHHHHHHHH
Q 000834 587 ASLTA-ERDGEIRKAALNTLA 606 (1263)
Q Consensus 587 ak~i~-D~d~~VR~AAl~~l~ 606 (1263)
.+++. |.+..||.+|+.+|+
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhcC
Confidence 77665 467778999998875
No 49
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=12 Score=47.86 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=122.2
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 106 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 106 ~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
.++...|.+.+=.++.||+..+..++.. ..|..+++.+.-|-+.-.|..|....---|-..|. +.+-+.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~------G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE-----eqpdLA 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAK------GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAE-----EQPDLA 106 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh-----cCCCce
Confidence 4677788888889999999999888842 22578899888887888888887765433333332 344333
Q ss_pred ch-HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhc--cCChhHHHHHHHHHHHHHccCCCCCchh-
Q 000834 186 GV-LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA--KLGAEGRKDLFDWLSKQLTGLSGFPDAA- 261 (1263)
Q Consensus 186 ~l-lp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~k--k~~p~vR~e~L~~L~~~l~~~~~~~~~~- 261 (1263)
.+ +..+=..|+|.++-+|..|..+|..+- +..+.+.+.-+.+.. -++|.||..+..-+.++..- .++.+
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL---d~e~k~ 179 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL---DPEQKD 179 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC---ChhhHH
Confidence 33 334445699999999999999887553 334445554444322 25789999997777666432 22333
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh----cC--hhhhhhhhhcCC
Q 000834 262 HLLKPASIAMTDKSSDVRKAAEACIVEILRA----GG--QETIEKNLKDIQ 306 (1263)
Q Consensus 262 ~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~----vG--~~~i~~~l~~L~ 306 (1263)
.++..+-..|.|+++-|=-+|.-++.++|-. ++ |+.+=..+.+++
T Consensus 180 qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvd 230 (968)
T KOG1060|consen 180 QLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVD 230 (968)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchh
Confidence 4444466678999999999999999888732 22 344444455555
No 50
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.32 E-value=0.22 Score=51.51 Aligned_cols=98 Identities=20% Similarity=0.346 Sum_probs=77.1
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhh--hhhchHH
Q 000834 112 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK--SSKGVLS 189 (1263)
Q Consensus 112 l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~--~~~~llp 189 (1263)
+...||. ..-+|...++. .+.+-.+.+.+|++||...|.+|+..||.++..+++-.|+.|.. ..+.|+.
T Consensus 13 l~~~dw~----~il~icD~I~~-----~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWG----LILDVCDKVKS-----DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHH----HHHHHHHHHhc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 4456884 34445555542 12335789999999999999999999999999999999999865 3457777
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000834 190 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 190 ~lL~kl~D-kK~~VR~aa~~aL~a~~~~~~ 218 (1263)
.+...+.+ ....|++-+...+..|.....
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 77777776 678999999999999998774
No 51
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.27 E-value=0.12 Score=47.93 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=65.1
Q ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHH
Q 000834 188 LSDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 266 (1263)
Q Consensus 188 lp~lL~kl-~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~p 266 (1263)
+|.+++.+ .|..+.||..+..+|. ..+-..+++.|...+.++ +|.+|..++..|.+. + ....+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i----~----~~~~~~~ 66 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDE--DPMVRRAAARALGRI----G----DPEAIPA 66 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSS--SHHHHHHHHHHHHCC----H----HHHTHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHh----C----CHHHHHH
Confidence 57888888 9999999999888887 334457788888888775 699999998776532 2 2445566
Q ss_pred HHhhhcC-CCHHHHHHHHHHHH
Q 000834 267 ASIAMTD-KSSDVRKAAEACIV 287 (1263)
Q Consensus 267 l~~~L~D-~~~eVR~aA~~~L~ 287 (1263)
+...+.| .+..||.+|..+|+
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhcC
Confidence 7777754 56678999998875
No 52
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=4.8 Score=50.83 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=66.9
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchH
Q 000834 423 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 502 (1263)
Q Consensus 423 ~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ 502 (1263)
-+++.-|.+.|..-|-++++-..+.+.+.. +.-++.++.+.+.+||..=.-+.-+|=+.+++.+....-.|.++
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrN------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRN------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhcc------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH
Confidence 367778899999999999999988887643 22233344444444432211111222222334444444467776
Q ss_pred HHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcC
Q 000834 503 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS 538 (1263)
Q Consensus 503 ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~ 538 (1263)
|..++|.|++=+||.++.-...+-..++...+.+|
T Consensus 394 -aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 394 -AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 78899999999999986665555555555554444
No 53
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.18 E-value=0.15 Score=54.60 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhcCC--cccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCCCHHH
Q 000834 520 EKVREKMRELTKQIVNFYSA--TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEI 597 (1263)
Q Consensus 520 ~~vR~~~~~il~~l~~v~~~--skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~V 597 (1263)
+.||..+-.++-.++.-||. ....+.+...|+++++.+|..|+..+..++..--+.+- ...+..+..++.|.|+.|
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k--~~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK--GQLFSRILKLLVDENPEI 79 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh--hhhhHHHHHHHcCCCHHH
Confidence 35777777777777777764 34566777788999999999999999999975222221 123477888999999999
Q ss_pred HHHHHHHHHHHHHH-HCHHHHHH
Q 000834 598 RKAALNTLATGYKI-LGEDIWRY 619 (1263)
Q Consensus 598 R~AAl~~l~~ly~~-~G~~l~~~ 619 (1263)
|+.|..++.++... .+..++..
T Consensus 80 r~~A~~~~~e~~~~~~~~~i~~~ 102 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNPNIIYNN 102 (178)
T ss_pred HHHHHHHHHHHHHhccchHHHHH
Confidence 99999999998776 34445443
No 54
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=6.3 Score=49.67 Aligned_cols=281 Identities=16% Similarity=0.146 Sum_probs=168.8
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhH-HHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhch
Q 000834 109 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL-FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 187 (1263)
Q Consensus 109 l~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL-~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~l 187 (1263)
++-|++.+.+...-|+-...+-.. ..++.-.| ...+++-++.+|.-=+..||.+|+.+.+- ..++.+
T Consensus 78 veVmsssk~~~krigylaa~qSf~------~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTp------dLARDL 145 (877)
T KOG1059|consen 78 VEVMSSSKFQQKRIGYLAASQSFH------DDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTP------DLARDL 145 (877)
T ss_pred hhhhhhhhhHHHHHhHHHHHHhhc------CCccHHHHHHHHHHHHhccCccchhhheecccccccCc------hhhHHH
Confidence 455666665555545443222221 11223333 34556667777776677777777765431 357889
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHH
Q 000834 188 LSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 265 (1263)
Q Consensus 188 lp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~--l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~ 265 (1263)
.+.++.-|+.+|+-||..|+-.|..++...+ +...++.+.+-|.+. .|.+..++.+.+.+.-..-+ ..+.++.+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp--Dp~V~SAAV~VICELArKnP--knyL~LAP 221 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP--DPSVVSAAVSVICELARKNP--QNYLQLAP 221 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC--CchHHHHHHHHHHHHHhhCC--cccccccH
Confidence 9999999999999999999999999987663 667788888888875 68999999988877755433 34566666
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHH----HHHHhhhcCCCccCCCCCCCCCCCCCCCC
Q 000834 266 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALAL----ILERIKLNGASQVSMGPTSKSSSKVPKSA 341 (1263)
Q Consensus 266 pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~----ilek~~~~~~~k~s~~p~sk~~sk~~~~~ 341 (1263)
-+++.|.+++-+ =+|..+++.+|. +..+.|--.+| |.+.++...++.- .-.+
T Consensus 222 ~ffkllttSsNN------WmLIKiiKLF~a------LtplEPRLgKKLieplt~li~sT~AmSL-----------lYEC- 277 (877)
T KOG1059|consen 222 LFYKLLVTSSNN------WVLIKLLKLFAA------LTPLEPRLGKKLIEPITELMESTVAMSL-----------LYEC- 277 (877)
T ss_pred HHHHHHhccCCC------eehHHHHHHHhh------ccccCchhhhhhhhHHHHHHHhhHHHHH-----------HHHH-
Confidence 678888665533 256667777663 22222222222 2233321100000 0000
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHHHHHHHHHhhh
Q 000834 342 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYF 421 (1263)
Q Consensus 342 s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~ 421 (1263)
-+.. .+..++.+. |..+..-+| |+
T Consensus 278 vNTV--------Va~s~s~g~------------------------------------------~d~~asiqL------Cv 301 (877)
T KOG1059|consen 278 VNTV--------VAVSMSSGM------------------------------------------SDHSASIQL------CV 301 (877)
T ss_pred HHHh--------eeehhccCC------------------------------------------CCcHHHHHH------HH
Confidence 0000 000000000 000000011 12
Q ss_pred hHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHH
Q 000834 422 REDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 490 (1263)
Q Consensus 422 ~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~ 490 (1263)
.+ +...+-++|-.-+-=|+-.|.+++..++..+.++-|+++|.+ .|+...+-.++|++|..++.
T Consensus 302 qK-Lr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL----~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 302 QK-LRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCL----DDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HH-HhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHh----ccCCchhHHHHHHHHHHHhh
Confidence 11 334445677777788889999999999888889999999976 79999999999998766654
No 55
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.09 E-value=13 Score=46.52 Aligned_cols=371 Identities=14% Similarity=0.141 Sum_probs=204.7
Q ss_pred chhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhh-hhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-Cch
Q 000834 143 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HLD 220 (1263)
Q Consensus 143 ~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~-~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~-~l~ 220 (1263)
...+...|...|...|..|...++..|+.++..-.....- .-..+++.++.+++|....|.++|.++|..+..+- +++
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 3566778888888999999999999988887543221221 22578999999999999999999999999998753 344
Q ss_pred hh-----HHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCc---hhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 221 KM-----VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 221 ~l-----l~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~---~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
.+ +..|...+.+. +..+|..++..+............ ...++..++.+|.+.+--||..|.+++..+...
T Consensus 155 ~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 44 45555555442 477888888777766543322111 123667788899999999999999999999862
Q ss_pred cChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccch
Q 000834 293 GGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQ 372 (1263)
Q Consensus 293 vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~ 372 (1263)
..-..++.+. .-..++.+.+.... . .|.. +..--.|.
T Consensus 233 ---~~g~~yL~~~--gi~~~L~~~l~~~~--~---dp~~------------------------~~~~l~g~--------- 269 (503)
T PF10508_consen 233 ---PHGLQYLEQQ--GIFDKLSNLLQDSE--E---DPRL------------------------SSLLLPGR--------- 269 (503)
T ss_pred ---hhHHHHHHhC--CHHHHHHHHHhccc--c---CCcc------------------------cchhhhhH---------
Confidence 2223333322 12333344332100 0 0000 00000000
Q ss_pred hhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccc
Q 000834 373 DFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 452 (1263)
Q Consensus 373 ~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~ 452 (1263)
.. ..+.+ . .. .+..+-..... |=..+...+-+.|-..+.-|++.+-.+-.+..
T Consensus 270 -~~-f~g~l----------------a--~~---~~~~v~~~~p~----~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 270 -MK-FFGNL----------------A--RV---SPQEVLELYPA----FLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred -HH-HHHHH----------------H--hc---ChHHHHHHHHH----HHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 00 00000 0 00 11111111111 11223344457788888999988876654321
Q ss_pred -hhhH-----HHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHH
Q 000834 453 -KDII-----EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKM 526 (1263)
Q Consensus 453 -~~~~-----~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~ 526 (1263)
...+ +.++.+++.+.-.....-.-+-.++|+.+..++..-. .-.+.+..
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~----~~~~~~i~--------------------- 377 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT----DRQDNDIL--------------------- 377 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC----CCchHHHH---------------------
Confidence 1111 1233334443333333444456667776666553111 00111111
Q ss_pred HHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHh-hccc-ccCccchHHHHHHhhcCCCHHHHHHHHHH
Q 000834 527 RELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH-HGAE-ISGQLKSLQIVASLTAERDGEIRKAALNT 604 (1263)
Q Consensus 527 ~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~-~G~~-v~~~~k~L~~Iak~i~D~d~~VR~AAl~~ 604 (1263)
.+.+.....++......+++.-+++-=+-.|...+.++..+..+ ||.. ++.....++++..--.+.+..++.+=.++
T Consensus 378 -~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~i 456 (503)
T PF10508_consen 378 -SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDI 456 (503)
T ss_pred -HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHH
Confidence 23333344444333333666667666778899999988877753 4432 22222334555433345777888887777
Q ss_pred HHHHHHH
Q 000834 605 LATGYKI 611 (1263)
Q Consensus 605 l~~ly~~ 611 (1263)
+..+.+.
T Consensus 457 i~~l~~~ 463 (503)
T PF10508_consen 457 IKALAKS 463 (503)
T ss_pred HHHHHhc
Confidence 7777643
No 56
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.05 E-value=0.036 Score=41.65 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 000834 264 LKPASIAMTDKSSDVRKAAEACIVEILRAG 293 (1263)
Q Consensus 264 l~pl~~~L~D~~~eVR~aA~~~L~~l~~~v 293 (1263)
++.+.++++|.+++||.+|..+++.+++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 455888999999999999999999998763
No 57
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.98 E-value=0.35 Score=49.70 Aligned_cols=98 Identities=15% Similarity=0.310 Sum_probs=77.3
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhh--hchHH
Q 000834 112 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 189 (1263)
Q Consensus 112 l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~--~~llp 189 (1263)
+...||.. +.++...++. ++.+-.+.+.+|++||...|.+|+..||.++..+.+-.|..|...+ +.|+.
T Consensus 14 l~~~dw~~----ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEA----IQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHH----HHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 34667864 4455556642 2333578999999999999999999999999999999999987543 57888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000834 190 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 190 ~lL~kl~D------kK~~VR~aa~~aL~a~~~~~~ 218 (1263)
.++..+.+ ....|++.+.+.+..|...+.
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88887753 457999999999999998774
No 58
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.89 E-value=0.13 Score=54.95 Aligned_cols=115 Identities=20% Similarity=0.293 Sum_probs=94.4
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHH-hccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHH---HHhcCchhh
Q 000834 106 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPAVE 181 (1263)
Q Consensus 106 ~~ll~~l~dk~WK~RkEaLe~L~~il~~-a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~L---A~alg~~f~ 181 (1263)
+-|++.+..++-==|.=|...+..++.. +..+|.|- +..|+..|+..|+-.|..|...+|++|..| ....|...-
T Consensus 41 pif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLv 119 (183)
T PF10274_consen 41 PIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALV 119 (183)
T ss_pred HHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3688999988887788888888888875 55667775 788999999999999999999999999999 778899999
Q ss_pred hhhhchHHHHH----HH--hC-----CCcHHHHHHHHHHHHHHHHhcCchh
Q 000834 182 KSSKGVLSDIL----KC--LG-----DNKKHMRECTLTVLDAWLAAVHLDK 221 (1263)
Q Consensus 182 ~~~~~llp~lL----~k--l~-----DkK~~VR~aa~~aL~a~~~~~~l~~ 221 (1263)
+|.+.++|.+= .+ +| .++..+++-+.++|..+-.+.|.+.
T Consensus 120 PyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 120 PYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 99999998765 11 22 2557888999999988877777654
No 59
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=94.61 E-value=0.32 Score=48.12 Aligned_cols=97 Identities=18% Similarity=0.328 Sum_probs=73.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc--hHHH
Q 000834 113 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSD 190 (1263)
Q Consensus 113 ~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~--llp~ 190 (1263)
.+..|..-...+.+|..++.+ .+.+..+++.+|++||.+.|.+++..||.+|..+.+-.|..|..++.. ++-.
T Consensus 10 ~~~~~~p~~~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~ 84 (115)
T cd00197 10 SNENMGPDWPLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVE 84 (115)
T ss_pred CCCCCCCCHHHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHH
Confidence 445566666677777777752 123468999999999999999999999999999999999998876643 3333
Q ss_pred HHH-----Hh-CCCcHHHHHHHHHHHHHHH
Q 000834 191 ILK-----CL-GDNKKHMRECTLTVLDAWL 214 (1263)
Q Consensus 191 lL~-----kl-~DkK~~VR~aa~~aL~a~~ 214 (1263)
++. .. .+....||+.+.+.+.+|.
T Consensus 85 l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 85 LLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 321 11 2557799999999999985
No 60
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.37 E-value=4.8 Score=47.27 Aligned_cols=147 Identities=21% Similarity=0.156 Sum_probs=102.3
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHH
Q 000834 115 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 194 (1263)
Q Consensus 115 k~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~k 194 (1263)
..|..|..+++.+..+- ..+.+..|...+.|.+..|...|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 44777888877765543 2345667777777888888888888888775544 5667788889
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCC
Q 000834 195 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 274 (1263)
Q Consensus 195 l~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 274 (1263)
+.|....||.++..+|-.+ +.......+..++.+. .+.++.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999998888644 4445556677777764 3555554433433 112334456678888999
Q ss_pred CHHHHHHHHHHHHHHHHhcC
Q 000834 275 SSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 275 ~~eVR~aA~~~L~~l~~~vG 294 (1263)
+..+|..+...+..+.....
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~ 307 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKA 307 (335)
T ss_pred hhhHHHHHHHHHHhhcccch
Confidence 99999999888887654444
No 61
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=94.36 E-value=0.15 Score=52.37 Aligned_cols=100 Identities=30% Similarity=0.523 Sum_probs=73.8
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhh--hchH
Q 000834 111 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 188 (1263)
Q Consensus 111 ~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~--~~ll 188 (1263)
.+.+.+|. +.-+|...++. . +.+-.+.+.+|+++|...|.+++..||.++..+.+-.|..|...+ +.++
T Consensus 17 ~~~~~Dw~----~~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl 87 (140)
T PF00790_consen 17 SLPSPDWS----LILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFL 87 (140)
T ss_dssp TSSS--HH----HHHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHH
T ss_pred CCCCCCHH----HHHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHH
Confidence 34556884 33445556652 1 233589999999999999999999999999999999999987543 4567
Q ss_pred HHHHHHhCCCcHH----HHHHHHHHHHHHHHhcCc
Q 000834 189 SDILKCLGDNKKH----MRECTLTVLDAWLAAVHL 219 (1263)
Q Consensus 189 p~lL~kl~DkK~~----VR~aa~~aL~a~~~~~~l 219 (1263)
..+...+.+++.. ||+.+.+.+..|...+.-
T Consensus 88 ~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 88 DELVKLIKSKKTDPETPVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCC
Confidence 7666655544332 899999999999998743
No 62
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.19 E-value=4.6 Score=46.08 Aligned_cols=192 Identities=12% Similarity=0.155 Sum_probs=122.7
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhc--cccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 108 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 108 ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~--DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
+.+++ .+|..=..++..+..+++. +.+.+....+++..+.+.+. .--........+++..+...-+........
T Consensus 47 ~~~rl--~D~~~~~~~l~gl~~L~~~--~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~ 122 (262)
T PF14500_consen 47 FCSRL--DDHACVQPALKGLLALVKM--KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGD 122 (262)
T ss_pred HHHHh--ccHhhHHHHHHHHHHHHhC--cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchh
Confidence 34555 4666666777777777742 44444434555555544331 112223444566666666655555555666
Q ss_pred chHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh--------hccCCh--hHHHHHHHHHHHHHccC
Q 000834 186 GVLSDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT--------DAKLGA--EGRKDLFDWLSKQLTGL 254 (1263)
Q Consensus 186 ~llp~lL~kl-~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~--------~kk~~p--~vR~e~L~~L~~~l~~~ 254 (1263)
.++.++++.+ ||+.|.----+-+-+..++....++...+++.+.+. .....| -.|.++-.-|..|+...
T Consensus 123 ~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~ 202 (262)
T PF14500_consen 123 DFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST 202 (262)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc
Confidence 7788888765 688876444555555555555555666666665532 111122 36777777777787643
Q ss_pred CCCCchhhhHHH-HHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCC
Q 000834 255 SGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 306 (1263)
Q Consensus 255 ~~~~~~~~ll~p-l~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~ 306 (1263)
+.+.+++.| +...|....+.|+..+.++|..++...|.+.+.+++..+=
T Consensus 203 ---~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 203 ---PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred ---HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 345566666 7889999999999999999999999999988888876553
No 63
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.16 E-value=0.36 Score=51.86 Aligned_cols=133 Identities=21% Similarity=0.253 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHhcC-chhhhhhhchHHHH-----------HHH-hCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000834 160 NLVMATLITLGAVASAMG-PAVEKSSKGVLSDI-----------LKC-LGDNKKHMRECTLTVLDAWLAAVH-------- 218 (1263)
Q Consensus 160 ~V~~~AL~~l~~LA~alg-~~f~~~~~~llp~l-----------L~k-l~DkK~~VR~aa~~aL~a~~~~~~-------- 218 (1263)
+|.+.|+.|++.+++... +.|-.|-..++|.- +.. +.|..+.||.+|.++|.++++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 467889999999999954 55777777777755 443 679999999999999999986431
Q ss_pred --------------c----hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC---CCc-hhhhHHHHHhhhcCCCH
Q 000834 219 --------------L----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASIAMTDKSS 276 (1263)
Q Consensus 219 --------------l----~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~---~~~-~~~ll~pl~~~L~D~~~ 276 (1263)
+ -.+-..+..++.+.+ ++.+-..+++.++-.+...+- ..+ +.+++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 1 112233455566554 577777888888877766542 223 34555557777899999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 000834 277 DVRKAAEACIVEILRAG 293 (1263)
Q Consensus 277 eVR~aA~~~L~~l~~~v 293 (1263)
+||-++.-|++.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999887554
No 64
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.99 E-value=0.91 Score=52.83 Aligned_cols=163 Identities=20% Similarity=0.233 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC----CchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHH
Q 000834 119 VRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 194 (1263)
Q Consensus 119 ~RkEaLe~L~~il~~a~~~i~p~----~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~k 194 (1263)
+-..|||-...|++ +|.+. +++=....|-..+.-+-..|.-.-++++....--+|+...+..+.++.++|-.
T Consensus 71 VH~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 34567776666664 23332 22223344445555677888888899999888899999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCC------C--------CCch
Q 000834 195 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDA 260 (1263)
Q Consensus 195 l~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~------~--------~~~~ 260 (1263)
+-|...-+-+.+.+.++.+...++-+.+...+-..+.. +|..|..++.|+.+.++... . ..+.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 99999999999999999999999988777777777765 59999999999999998765 1 1233
Q ss_pred hhhHHHHHhhhcCCCHHHHHHHHHHHHH
Q 000834 261 AHLLKPASIAMTDKSSDVRKAAEACIVE 288 (1263)
Q Consensus 261 ~~ll~pl~~~L~D~~~eVR~aA~~~L~~ 288 (1263)
.-++..++.||+|.+-=|+..+.+.|..
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 3455668999999999999777666554
No 65
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.85 E-value=0.056 Score=45.98 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000834 160 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 212 (1263)
Q Consensus 160 ~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a 212 (1263)
.|...|+.+|+.++...+..+.+|...++|.++..|.|....||.+|..||..
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46778889999988888888999999999999999999999999999988864
No 66
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.76 E-value=1.3 Score=54.06 Aligned_cols=183 Identities=17% Similarity=0.218 Sum_probs=130.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhh-ccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHH
Q 000834 113 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 191 (1263)
Q Consensus 113 ~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL-~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~l 191 (1263)
...++-.|..++.-+..+++ |......+.+++..+...+ .+.+......++.++.-+++|+=-.-.+....++..+
T Consensus 200 ~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L 276 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKL 276 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 45569999999998888874 4322223567777777666 5677778888889998888886434457788889999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHc
Q 000834 192 LKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 252 (1263)
Q Consensus 192 L~kl~DkK~~VR~aa~~aL~a~~~~~--------~-----------l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~ 252 (1263)
++.|+| +.+...+..++..++.-. + +..+++.+....... +...|...|.-|...+.
T Consensus 277 ~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ALs~ll~ 352 (415)
T PF12460_consen 277 LELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLTALSHLLK 352 (415)
T ss_pred HHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHHHHHHHHh
Confidence 999999 667788888888777531 1 223445555555443 23477777777888888
Q ss_pred cCCCC---CchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhh
Q 000834 253 GLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 303 (1263)
Q Consensus 253 ~~~~~---~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~ 303 (1263)
..+.. .++..+++.+..+|.=.+++||.++-+++..++..- .+.+..++.
T Consensus 353 ~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~ 405 (415)
T PF12460_consen 353 NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLS 405 (415)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 77642 355666666899998888899999999999888766 345555544
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.47 E-value=6.1 Score=52.35 Aligned_cols=138 Identities=19% Similarity=0.137 Sum_probs=93.2
Q ss_pred cCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCc----ccHHHH
Q 000834 471 CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT----KTLPYI 546 (1263)
Q Consensus 471 ~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~s----kv~~~l 546 (1263)
.|.-+-|-+..|+-|..|+-++..+..+ ..+|++|+.=|.|.-..+|-..-+-+--++-.++.. .++|++
T Consensus 588 sd~~~~Vkr~Lle~i~~LC~FFGk~ksN------D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 588 SDSPPIVKRALLESIIPLCVFFGKEKSN------DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLL 661 (1431)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhhcccc------cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHH
Confidence 4544444444556666666666554432 467888888888877778877555443333333333 467777
Q ss_pred HHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCH
Q 000834 547 LEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 614 (1263)
Q Consensus 547 l~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~ 614 (1263)
..|+...-.-|....|.-+..||+..-+....-.+.++.+..++.+.|.=||.+++..+.+++..++.
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 77888888888888888887777654443211123447778889999999999999999999998876
No 68
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=1.6 Score=57.45 Aligned_cols=183 Identities=12% Similarity=0.127 Sum_probs=132.6
Q ss_pred ChhHHHHHHHHHHHHHHHhccCC---CCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHH
Q 000834 116 DWKVRLESIEAVNKILEEANKRI---QPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 192 (1263)
Q Consensus 116 ~WK~RkEaLe~L~~il~~a~~~i---~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL 192 (1263)
+-+.++-+.+-|..++.. +-. ....+.++...|..-+.++-..+...++.|+..|.+.++.++..++...+|-++
T Consensus 667 ~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvI 744 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVI 744 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 667778888877777742 111 111246778888888888888999999999999999999888888889999888
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHH--hc---C-------chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC---C
Q 000834 193 KCLGDNKKHMRECTLTVLDAWLA--AV---H-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F 257 (1263)
Q Consensus 193 ~kl~DkK~~VR~aa~~aL~a~~~--~~---~-------l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~---~ 257 (1263)
-.++|-...-|.-+-+||..+.. .. | +..++..|..++... ...++...+--+...+..... .
T Consensus 745 L~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 745 LSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred HhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccH
Confidence 88899999999999999999883 21 2 223444444444433 244444423334444444332 2
Q ss_pred CchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhh
Q 000834 258 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 302 (1263)
Q Consensus 258 ~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l 302 (1263)
..+..++..++.+|...+++||++|...+..++..+.+.-+.+++
T Consensus 823 ~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 345667777899999999999999999999999999876665554
No 69
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.35 E-value=0.8 Score=46.74 Aligned_cols=98 Identities=20% Similarity=0.405 Sum_probs=73.4
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhh--hchHH
Q 000834 112 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 189 (1263)
Q Consensus 112 l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~--~~llp 189 (1263)
+.+.+|..=. ++...++. . +.+-.+.+++|++||...|.+++..||.++..+.+-.|..|...+ +.++.
T Consensus 13 l~~~dw~~~l----~icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELIL----EICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHHH----HHHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 4467886433 34445542 1 233578999999999999999999999999999999999986544 45666
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000834 190 DILKCLGDNKK--HMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 190 ~lL~kl~DkK~--~VR~aa~~aL~a~~~~~~ 218 (1263)
.+...+.++.. .|++.+...+..|...+.
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 66655555443 399999999999998763
No 70
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.27 E-value=0.96 Score=46.13 Aligned_cols=99 Identities=21% Similarity=0.353 Sum_probs=76.0
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh--chHH
Q 000834 112 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLS 189 (1263)
Q Consensus 112 l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~--~llp 189 (1263)
+.+.||.. .-+|..+++. . +.+-.+.+++|+++|...|.+++..||.++..+.+-.|+.|...+. .++-
T Consensus 13 ~~~~D~~~----il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWAL----NLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHH----HHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 34578864 4445556642 1 3346899999999999999999999999999999999999865433 5666
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCc
Q 000834 190 DILKCLGD---NKKHMRECTLTVLDAWLAAVHL 219 (1263)
Q Consensus 190 ~lL~kl~D---kK~~VR~aa~~aL~a~~~~~~l 219 (1263)
.++..+.. ....|++.+.+.+..|....+-
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 76666654 3668999999999999987753
No 71
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.10 E-value=1.2 Score=46.05 Aligned_cols=99 Identities=20% Similarity=0.364 Sum_probs=74.7
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhh--hhhchHH
Q 000834 112 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK--SSKGVLS 189 (1263)
Q Consensus 112 l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~--~~~~llp 189 (1263)
+...+|..=.| |...++. . +.+-.+.+++|++||...|.+++..||.++..+.+-.|..|.. ..+.++.
T Consensus 17 l~~~dw~~ile----icD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 17 LGEPDLASILE----ICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred cCccCHHHHHH----HHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 35567865443 4444442 1 2235789999999999999999999999999999999998865 3346666
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcCc
Q 000834 190 DILKCLG-DNKKHMRECTLTVLDAWLAAVHL 219 (1263)
Q Consensus 190 ~lL~kl~-DkK~~VR~aa~~aL~a~~~~~~l 219 (1263)
.+...+. .....|++.+...+..|...+.-
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 6666554 45668999999999999987753
No 72
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.94 E-value=3.5 Score=48.19 Aligned_cols=203 Identities=19% Similarity=0.147 Sum_probs=110.1
Q ss_pred HHhhhcCccHHHHHHHHHHHHHhccccc-hhh-----HHHHHHHHHHHHHhhcCchHHHH-HHHHHhHHHHHHHHhhcCC
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIR-KDI-----IEVLDILLRWFVLQFCKSNTTCL-LKVLEFLPELFDTLRDEGY 497 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~~~~-~~~-----~~~lDlllk~l~lrl~DtN~qV~-~k~Le~L~~l~~~L~~~~~ 497 (1263)
.+..+..+.-+.|.+||+.|...+.... .+. ...+|.++|.+..+ ...-+++ .+++.+ ++=.+.. .
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg--~~~E~~lA~~~l~L---l~ltlg~--g 120 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG--KSEEQALAARALAL---LALTLGA--G 120 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHH---HhhhcCC--C
Confidence 5567778889999999999999986642 122 22355555555321 1233332 233332 2211210 1
Q ss_pred CcchHHHHhHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHhcCCc--------ccHH--HHHHhhcc----------CCh
Q 000834 498 SLTESEAAVFLPCLVEKSGHN--IEKVREKMRELTKQIVNFYSAT--------KTLP--YILEGLRS----------KNN 555 (1263)
Q Consensus 498 ~lsd~ea~~~lP~LveKlGD~--K~~vR~~~~~il~~l~~v~~~s--------kv~~--~ll~glks----------KN~ 555 (1263)
.-.+.....+.|.|..-+-|. -..+|..+..++-.++.+.+.. .++. |.....++ .++
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 122333456777776655443 3456777766665554443332 1233 22221221 134
Q ss_pred HhHHHHHHHHHHHHHhhccccc-Cc-cchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHHHhcCCCHHHHHHHHH
Q 000834 556 RTRIECVDLVGFLIDHHGAEIS-GQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDD 633 (1263)
Q Consensus 556 rvR~ecL~~L~~lI~~~G~~v~-~~-~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l~~L~~~~~~~Lee 633 (1263)
.+...+|.--+.++........ .. ...++.+..++...|.+||-||=.+|+.+|....+.-..+... .+..|-+
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~----~~~~l~~ 276 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYE----DMEELLE 276 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccccccc----CHHHHHH
Confidence 5666666655555543332101 01 1245778889999999999999999999999887432223222 4444555
Q ss_pred HHHHH
Q 000834 634 RFKWK 638 (1263)
Q Consensus 634 r~kr~ 638 (1263)
+++.-
T Consensus 277 ~l~~L 281 (309)
T PF05004_consen 277 QLREL 281 (309)
T ss_pred HHHHH
Confidence 55443
No 73
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.85 E-value=1.8 Score=56.98 Aligned_cols=190 Identities=18% Similarity=0.191 Sum_probs=126.1
Q ss_pred ccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCC---ch-hHHHHHHhhhccccHHHHHHH-HHHHHHHH
Q 000834 99 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG---TG-ELFGGLRGRLYDSNKNLVMAT-LITLGAVA 173 (1263)
Q Consensus 99 DI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~---~~-eL~~aLk~rL~DsN~~V~~~A-L~~l~~LA 173 (1263)
+.++.+-+-|+.-+.|..-++|..||+.|.+++.- .+.+.+.| +- =|+..|+..+.|++...+..| ..+|+.||
T Consensus 458 ~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~-Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 458 VKLDRVLPYFVHLLMDSEADVRATALETLTELLAL-VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh-ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 34445667889999999999999999999999963 34454442 22 367888998889555544444 56777777
Q ss_pred Hhc-C------------------c------hhhhh----hhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----ch
Q 000834 174 SAM-G------------------P------AVEKS----SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LD 220 (1263)
Q Consensus 174 ~al-g------------------~------~f~~~----~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~----l~ 220 (1263)
... + . .++.+ ...+-..+..-+.|.++.||.+..+.|--++.-.| -|
T Consensus 537 ~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND 616 (1431)
T KOG1240|consen 537 KTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSND 616 (1431)
T ss_pred HHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccccc
Confidence 621 0 0 12222 22333444556789999999998888665544332 46
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHH-HhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 221 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 221 ~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl-~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
-++..|.++|.++ .|.+|...+.-+.-.---.+ .....+++.|+ -+.|.|+-.-|=..|..|+..+++.
T Consensus 617 ~iLshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG-~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 617 VILSHLITFLNDK--DWRLRGAFFDSIVGVSIFVG-WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred chHHHHHHHhcCc--cHHHHHHHHhhccceEEEEe-eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh
Confidence 7888888888876 58888877554431111111 12356777774 5678999998888888888887754
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.69 E-value=1 Score=54.50 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHH
Q 000834 188 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 267 (1263)
Q Consensus 188 lp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl 267 (1263)
+..+++.+.|....||.++.++|- .++.....+.|...+.+. .|.+|..++.-+... . ..-..++
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg----~i~~~~a~~~L~~~L~~~--~p~vR~aal~al~~r----~-----~~~~~~L 152 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALG----WLGGRQAEPWLEPLLAAS--EPPGRAIGLAALGAH----R-----HDPGPAL 152 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh----cCCchHHHHHHHHHhcCC--ChHHHHHHHHHHHhh----c-----cChHHHH
Confidence 444555555555555555555543 123333334444444433 344554443322221 0 0112234
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHH
Q 000834 268 SIAMTDKSSDVRKAAEACIVEILR 291 (1263)
Q Consensus 268 ~~~L~D~~~eVR~aA~~~L~~l~~ 291 (1263)
...|+|.++.||.+|..+++.+-.
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhcc
Confidence 444445555555555555555443
No 75
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=92.68 E-value=3.5 Score=48.38 Aligned_cols=155 Identities=22% Similarity=0.239 Sum_probs=106.0
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 106 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 106 ~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
+.+++.+.+.+|-.|..+...+..+ +..+.+..|...+.|.+..|...|+.+++.+- ..
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 4567888899999999998873222 13567888999999999999999988666541 23
Q ss_pred chHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhcc----------CChhHHHHHHHHHHHHHccC
Q 000834 186 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAK----------LGAEGRKDLFDWLSKQLTGL 254 (1263)
Q Consensus 186 ~llp~lL~kl~-DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk----------~~p~vR~e~L~~L~~~l~~~ 254 (1263)
..++++++.+. |.+..||..+..+|..+...-. +..+...+.+.. .-+.+|..+..- +..+
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~----l~~~ 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA----LGEL 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH----HHHc
Confidence 45677777776 8999999999999987765433 334445554432 001233333222 2212
Q ss_pred CCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 000834 255 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 293 (1263)
Q Consensus 255 ~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~v 293 (1263)
.....+.++...+.|...+||.+|..+|+.+....
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 12345556788899999999999999999877663
No 76
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=16 Score=47.68 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=57.1
Q ss_pred cccHHHHHH--HHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000834 156 DSNKNLVMA--TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 220 (1263)
Q Consensus 156 DsN~~V~~~--AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~ 220 (1263)
+.+.++... .+..|+.+|..+|..|.+++...+=++++++++..+.|+..|..|+.+++..++.+
T Consensus 557 ~~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~ 623 (1014)
T KOG4524|consen 557 IKKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYG 623 (1014)
T ss_pred hhccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCC
Confidence 445555444 46789999999999999999999999999999999999999999999999998754
No 77
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.55 E-value=0.74 Score=44.58 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=70.2
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh-chHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----
Q 000834 146 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----- 219 (1263)
Q Consensus 146 L~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~-~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l----- 219 (1263)
++..|.+.+.|.|..+...++.+++.++..--........ .++|.+++.+.|....|+..+..+|..+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4566666677888999999999999998764333334444 8999999999999999999999999988764421
Q ss_pred --hhhHHHHHHHHhhccCChhHHHHHHHHH
Q 000834 220 --DKMVPYVTTALTDAKLGAEGRKDLFDWL 247 (1263)
Q Consensus 220 --~~ll~~l~~~L~~kk~~p~vR~e~L~~L 247 (1263)
..+++.+...+.+. +..++..++..|
T Consensus 88 ~~~g~l~~l~~~l~~~--~~~~~~~a~~~l 115 (120)
T cd00020 88 LEAGGVPKLVNLLDSS--NEDIQKNATGAL 115 (120)
T ss_pred HHCCChHHHHHHHhcC--CHHHHHHHHHHH
Confidence 12445555555443 355555555433
No 78
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.50 E-value=57 Score=44.89 Aligned_cols=116 Identities=20% Similarity=0.178 Sum_probs=87.1
Q ss_pred hcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000834 175 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 250 (1263)
Q Consensus 175 alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~----l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~ 250 (1263)
++..+|......++.-|+..+++....+|..|+.||..+++.-+ -..|...+-+-+.+. +..||.+++..+.+.
T Consensus 805 a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Ds--sasVREAaldLvGrf 882 (1692)
T KOG1020|consen 805 AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDS--SASVREAALDLVGRF 882 (1692)
T ss_pred HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccc--hhHHHHHHHHHHhhh
Confidence 33445556666667777888999999999999999999998643 245555666666553 578999999999988
Q ss_pred HccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 000834 251 LTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 251 l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG 294 (1263)
+-..+. ....+-..+...+.|..-.||+-+.+.+-.+|.-..
T Consensus 883 vl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 883 VLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred hhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 865531 234445556777899999999999999999987655
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.36 E-value=11 Score=45.99 Aligned_cols=225 Identities=14% Similarity=0.003 Sum_probs=133.0
Q ss_pred HHHHHHHHHHH-hhhChhhHHHHHHHHHHHHHHh-hHHHHhhhccCCHHHHHHHHHHHhcCCCCCCCCCccccccccccc
Q 000834 8 VLCINLLVQVT-THFMWNSTSGLVSSLRFLRLFY-FADIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 85 (1263)
Q Consensus 8 ~~~~~~l~k~~-~h~d~~VR~~ai~Ll~~ly~~i-G~~l~~~l~dlkp~~l~~Le~efeK~~~~~~p~p~R~~r~~~~~~ 85 (1263)
...+..|...| ..-++.|+.++.-.+.....-. -+.|...|+|-.+.....+-+.+.+++..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~---------------- 116 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGR---------------- 116 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCch----------------
Confidence 44566677777 4566788876655444322211 13344555555554555555555444210
Q ss_pred cCCCCCCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHH
Q 000834 86 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 165 (1263)
Q Consensus 86 ~~~~~~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~A 165 (1263)
..-..+...+.+.+...|..+++.+... ... -...|...|.|.+..|...|
T Consensus 117 -----------------~a~~~L~~~L~~~~p~vR~aal~al~~r------~~~------~~~~L~~~L~d~d~~Vra~A 167 (410)
T TIGR02270 117 -----------------QAEPWLEPLLAASEPPGRAIGLAALGAH------RHD------PGPALEAALTHEDALVRAAA 167 (410)
T ss_pred -----------------HHHHHHHHHhcCCChHHHHHHHHHHHhh------ccC------hHHHHHHHhcCCCHHHHHHH
Confidence 0113477888999999999988544331 111 13456666779999999999
Q ss_pred HHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHH
Q 000834 166 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD 245 (1263)
Q Consensus 166 L~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~ 245 (1263)
+.+++.+... ..+|.+...+.|..+.||.++..++-.+ |-...++.+....... ++.++..+..
T Consensus 168 ~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~ 231 (410)
T TIGR02270 168 LRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLV 231 (410)
T ss_pred HHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHH
Confidence 9999987432 4455567779999999999999999433 3334444444433332 3444444433
Q ss_pred HHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCC
Q 000834 246 WLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 306 (1263)
Q Consensus 246 ~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~ 306 (1263)
++... + ....+..+...+.|.. ||..+..+++.+- ..+.+...+..+.
T Consensus 232 ~lal~----~----~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg---~p~av~~L~~~l~ 279 (410)
T TIGR02270 232 LLAVA----G----GPDAQAWLRELLQAAA--TRREALRAVGLVG---DVEAAPWCLEAMR 279 (410)
T ss_pred HHHhC----C----chhHHHHHHHHhcChh--hHHHHHHHHHHcC---CcchHHHHHHHhc
Confidence 33221 1 1255566777788865 8988888887432 2234444444443
No 80
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=0.59 Score=57.05 Aligned_cols=101 Identities=26% Similarity=0.455 Sum_probs=80.3
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhh--hhc
Q 000834 109 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKG 186 (1263)
Q Consensus 109 l~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~--~~~ 186 (1263)
-+.+...||-.-.| |..+|+. ...+..|.+.+||+||.+.|..|+..||.+|..+.+-.|..|... -+.
T Consensus 11 ~~~l~~pDWa~Nle----IcD~IN~-----~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~ 81 (470)
T KOG1087|consen 11 SESLAEPDWALNLE----ICDLINS-----TEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKE 81 (470)
T ss_pred cccccCccHHHHHH----HHHHHhc-----CccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34567889975544 5556643 112246999999999999999999999999999999999998744 458
Q ss_pred hHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC
Q 000834 187 VLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 187 llp~lL~kl~Dk--K~~VR~aa~~aL~a~~~~~~ 218 (1263)
|+..++..++.+ -..||+.++..|++|.+.++
T Consensus 82 fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 82 FLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 899988888876 44799999999999998764
No 81
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=8.8 Score=47.99 Aligned_cols=261 Identities=20% Similarity=0.194 Sum_probs=145.9
Q ss_pred chHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC----CCch
Q 000834 186 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG----FPDA 260 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l-~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~----~~~~ 260 (1263)
.+...+..-++|....||++|.++|.++.+-..+ ..+.....+.|.+. .-.+|.+++..+.-+=..++. ....
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~--~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDD--YEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 3444477788999999999999999999985544 34556667777775 377999987655433333321 1112
Q ss_pred hh----hHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCCCCCCC
Q 000834 261 AH----LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSK 336 (1263)
Q Consensus 261 ~~----ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk 336 (1263)
.. ...-+|..+.|.+-.||-.|.++|+.+-. +.++.+..-+ ++ |+.-..+... ++-+
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-vSee~i~QTL---dK----Klms~lRRkr-----------~ahk 336 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-VSEEIIQQTL---DK----KLMSRLRRKR-----------TAHK 336 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-hHHHHHHHHH---HH----HHhhhhhhhh-----------hccc
Confidence 22 23347888999999999999999996543 3333333322 21 1111121100 0000
Q ss_pred CCCC-CCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHHHHHH
Q 000834 337 VPKS-ASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELEN 415 (1263)
Q Consensus 337 ~~~~-~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve~L~~ 415 (1263)
.++. -++|.- +++ .+|+-+.|.+|.-+
T Consensus 337 rpk~l~s~Gew---------------------------------------SsG---------k~~~advpsee~d~---- 364 (823)
T KOG2259|consen 337 RPKALYSSGEW---------------------------------------SSG---------KEWNADVPSEEDDE---- 364 (823)
T ss_pred chHHHHhcCCc---------------------------------------ccC---------ccccccCchhhccc----
Confidence 0000 000000 000 12333333322100
Q ss_pred HHHhhhhH----HHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHH
Q 000834 416 DMMKYFRE----DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDT 491 (1263)
Q Consensus 416 q~~~~~~~----~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~ 491 (1263)
+-...++. .++..|-+.=+.-|.+|+..+....-+.+.-....+|.+...+ +|----|-.+++..|..+...
T Consensus 365 ~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMf----NDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 365 EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMF----NDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHH
Confidence 00111111 1111111222467899999998887666655556677777664 788888888999888777664
Q ss_pred HhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHH
Q 000834 492 LRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQ 532 (1263)
Q Consensus 492 L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~ 532 (1263)
+ .+.+.. ++.+.+-+-|....||+..+++++.
T Consensus 441 l-----~i~eeq----l~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 441 L-----AIREEQ----LRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred h-----eecHHH----HHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3 233333 4555556666677788888888753
No 82
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.25 E-value=3.8 Score=49.91 Aligned_cols=183 Identities=19% Similarity=0.210 Sum_probs=103.3
Q ss_pred CccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhh-cCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHH
Q 000834 431 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLP 509 (1263)
Q Consensus 431 s~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl-~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP 509 (1263)
+.++-.|..+++.+...++...... .++-++.++...+ ...........++++..+...|.-.++.. +..++.
T Consensus 201 ~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~----~~~~~~ 274 (415)
T PF12460_consen 201 SEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL----ATELLD 274 (415)
T ss_pred CCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch----HHHHHH
Confidence 4457777777777776665532111 2344444443333 23334444455555555555554443332 344555
Q ss_pred HHHHHhCCC-----------------hHHHHHHHHHHHHHHHH--hcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHH
Q 000834 510 CLVEKSGHN-----------------IEKVREKMRELTKQIVN--FYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 570 (1263)
Q Consensus 510 ~LveKlGD~-----------------K~~vR~~~~~il~~l~~--v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~ 570 (1263)
.|++.++|. .+......+..++-+.+ +| ..+++.++++.+..+.-.|..+|.-+..+++
T Consensus 275 ~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~ 352 (415)
T PF12460_consen 275 KLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFKEADDEIKSNYLTALSHLLK 352 (415)
T ss_pred HHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Confidence 555555552 11112222222222221 11 2355566666665555589999999999998
Q ss_pred hhcccccC-c-cchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHHHhc
Q 000834 571 HHGAEISG-Q-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVG 621 (1263)
Q Consensus 571 ~~G~~v~~-~-~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l~ 621 (1263)
.-...+.. . .+.+|.+.+.+.-.|..||.++++++..+-.--.+-+..|++
T Consensus 353 ~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 353 NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 76655542 2 344588899999899999999999998875555444444444
No 83
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.95 E-value=1.9 Score=50.20 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=104.4
Q ss_pred CCChhHHHHHHHHHHHHHHHhccCC--CCCCchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCch-hhhhhhchHH
Q 000834 114 SPDWKVRLESIEAVNKILEEANKRI--QPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLS 189 (1263)
Q Consensus 114 dk~WK~RkEaLe~L~~il~~a~~~i--~p~~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~-f~~~~~~llp 189 (1263)
.+.|.+=-..|..|.+.+...++.+ -|. -..+.+.|.+.++ ..-..|=+.||++.+.|.+.+|++ +.+.+..+.|
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~-k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPH-KLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCc-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 4679999999999999997212222 222 2456778888876 677778888999999999988865 3333333333
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC--CCchhhhHHHH
Q 000834 190 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPA 267 (1263)
Q Consensus 190 ~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~--~~~~~~ll~pl 267 (1263)
.+...+.+. +.++|-.+++.+.+.+-..+. .+.++.++..+
T Consensus 101 -----------------------------------GLfpl~~~a--si~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~sl 143 (307)
T PF04118_consen 101 -----------------------------------GLFPLFSYA--SIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSL 143 (307)
T ss_pred -----------------------------------HHHHHHHHH--HHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 344555554 367888888888877764443 12233444445
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhh
Q 000834 268 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 300 (1263)
Q Consensus 268 ~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~ 300 (1263)
+.+|+|-+.|+-+...+++..++..+|.+.+..
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~ 176 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQ 176 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhHHHH
Confidence 667799999999999999999999999885554
No 84
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=91.95 E-value=1.7 Score=44.93 Aligned_cols=98 Identities=27% Similarity=0.465 Sum_probs=73.3
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhh--hchH
Q 000834 112 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 188 (1263)
Q Consensus 112 l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~--~~ll 188 (1263)
+...||..=.| |...++. . ..+-.+.+.+|++||. ..|.+|+..||.++..+++-.|..|...+ +.++
T Consensus 14 l~~~dw~~ile----icD~In~--~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNME----ICDIINE--T---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHH----HHHHHhC--C---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 44568875444 4444432 1 2235789999999997 57999999999999999999999987544 4777
Q ss_pred HH-HHHHhCCC---cHHHHHHHHHHHHHHHHhcC
Q 000834 189 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 189 p~-lL~kl~Dk---K~~VR~aa~~aL~a~~~~~~ 218 (1263)
.. ++..+.++ ...|++.+.+.+..|...+.
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 76 56666533 34899999999999998774
No 85
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.49 E-value=2.5 Score=52.59 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=93.1
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
.|+..++|.=+.+|.+|++.+..+... .|+--..-+..|...++|----|...|+..+..|+..+ ..-..
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~s-----sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-----~i~ee 446 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATS-----SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-----AIREE 446 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----eecHH
Confidence 567788898999999999999998752 22212456778888889999999999999999998863 33456
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Q 000834 187 VLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 254 (1263)
Q Consensus 187 llp~lL~kl~DkK~~VR~aa~~aL~a~~~~--~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~ 254 (1263)
.++.+++.|-|....||+++.+-|-..--. ..++.++..+...|.. -|+-|-++|..+.+.=.++
T Consensus 447 ql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~k---yPqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 447 QLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGK---YPQDRDEILRCMGRIGQNH 513 (823)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh---CCCCcHHHHHHHHHHhccC
Confidence 789999999999999999887766532100 0122222333333322 3667777776666554433
No 86
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=3.5 Score=51.82 Aligned_cols=167 Identities=19% Similarity=0.195 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhHHHH--hh--h---ccCCHHHHH----HHHHHHhcCCCCCCC--
Q 000834 6 FWVLCINLLVQVTTHFMWNSTSGLVSSLRFLRLFYFADIK--GF--L---ADVKPALLS----ALDAEYEKNPFEGTV-- 72 (1263)
Q Consensus 6 ~~~~~~~~l~k~~~h~d~~VR~~ai~Ll~~ly~~iG~~l~--~~--l---~dlkp~~l~----~Le~efeK~~~~~~p-- 72 (1263)
|-..|+--..+-....|-+++..|+-=+..+-.+ |-++. .| + ...|-++.. ..-.-|.+- ..-
T Consensus 33 fis~~l~e~r~E~k~~d~~~k~~a~~kl~yl~ml-g~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~---tdvlm 108 (877)
T KOG1059|consen 33 FISQCLEEIRQELKSDDLNVKSNAVLKLTYLEML-GVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDD---TDVLM 108 (877)
T ss_pred HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH-cchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCC---ccHHH
Confidence 6778888889999999999999988777666666 65533 22 1 122211111 011111110 000
Q ss_pred ---CCccccccccccccC--CCCCCCCCCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHH
Q 000834 73 ---VPKKTVRASESTSSV--SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 147 (1263)
Q Consensus 73 ---~p~R~~r~~~~~~~~--~~~~~dllprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~ 147 (1263)
-.+|..+.++..-+. +=+|..-+---|+..-|..+++..|++++==.||-|+--+.+++-.. |..+..-+
T Consensus 109 L~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-----PeAlr~~F 183 (877)
T KOG1059|consen 109 LTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-----PEALRPCF 183 (877)
T ss_pred HHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-----hHhHhhhH
Confidence 001111111110000 00111112333555667788999999999889999999999988642 11245567
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHhcCchhh
Q 000834 148 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 181 (1263)
Q Consensus 148 ~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~ 181 (1263)
.-|+..|.|.+..|+..|.+.+.+||+.--+++=
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 8889999999999999999999999998665543
No 87
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=90.80 E-value=2.7 Score=55.54 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHhccCC---CCCCc-hhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHH
Q 000834 118 KVRLESIEAVNKILEEANKRI---QPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 193 (1263)
Q Consensus 118 K~RkEaLe~L~~il~~a~~~i---~p~~~-~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~ 193 (1263)
-+|+-|.-.|+.+...-..-+ .|. + .-|+.+|.+.+ |+|- -....++....++.-|+..+++ +-..+|.++.
T Consensus 748 ~errgael~L~~l~~~fg~sl~~klp~-l~~~L~~~L~~~~-~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~ 823 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAAKLPH-LWDFLLKALSGLI-DGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFF 823 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHHhcch-HHHHHHHhhhccC-CCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHH
Confidence 457777666666654210111 111 2 12334444422 4442 4455677888888899999988 8899999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHhcCchhh---HHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC---CCchhhhHHHH
Q 000834 194 CLGDNKKHMRECTLTVLDAWLAAVHLDKM---VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPA 267 (1263)
Q Consensus 194 kl~DkK~~VR~aa~~aL~a~~~~~~l~~l---l~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~---~~~~~~ll~pl 267 (1263)
.....-..||.++..|+..+++....+.+ ++.+..-+..- .--+|......+..++..... .+-..-+++|+
T Consensus 824 ~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pl 901 (1549)
T KOG0392|consen 824 FVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPL 901 (1549)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hhHhhhhhHHHHHHHHHHhhcccccccceeehhhh
Confidence 99999999999999999999987654433 33333333321 122333333333334433221 23344567789
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhcChhh
Q 000834 268 SIAMTDKSSDVRKAAEACIVEILRAGGQET 297 (1263)
Q Consensus 268 ~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~ 297 (1263)
..++.|..-.||.+|.+++..++..++.+.
T Consensus 902 lr~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 902 LRRMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred hcccccchHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999988654
No 88
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.76 E-value=4.5 Score=55.02 Aligned_cols=212 Identities=16% Similarity=0.208 Sum_probs=140.8
Q ss_pred hhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcc
Q 000834 421 FREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLT 500 (1263)
Q Consensus 421 ~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~ls 500 (1263)
+=+.|...|.+.+-..|++|+..+..++.....-..+..|-+++.+..||+|..+.|..+|++...+.+-. +=+
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~------~~~ 333 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN------NPS 333 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc------Cch
Confidence 33457778889999999999999988886654333333455566666799999999999999987765432 122
Q ss_pred hHHHHhHHHHHHHHhCCChHHHHHHHHHH---HHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHh-hcccc
Q 000834 501 ESEAAVFLPCLVEKSGHNIEKVREKMREL---TKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH-HGAEI 576 (1263)
Q Consensus 501 d~ea~~~lP~LveKlGD~K~~vR~~~~~i---l~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~-~G~~v 576 (1263)
-.++...+-++-+..-|.++.+|..+--. +..+..++-+. ++..+.+.+..|-|+||..|+.-|..+.++ |-...
T Consensus 334 ~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~ 412 (1266)
T KOG1525|consen 334 IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRS 412 (1266)
T ss_pred hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567777778888888888887652111 12233344444 889999999999999999999999999986 32110
Q ss_pred cC------ccchH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHH-----CHH---HHHHhcCCCHHHHHHHHHHHHHHHH
Q 000834 577 SG------QLKSL-QIVASLTAERDGEIRKAALNTLATGYKIL-----GED---IWRYVGKLTDAQKSMLDDRFKWKVR 640 (1263)
Q Consensus 577 ~~------~~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~-----G~~---l~~~l~~L~~~~~~~Leer~kr~~~ 640 (1263)
.+ +..-+ ..+-.++-..+-+.| +-+.++-.-|.+= -++ ++..|++++....+.+++.+++..+
T Consensus 413 ~~~k~~t~~~swIp~kLL~~~y~~~~~~r-~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q~~ 490 (1266)
T KOG1525|consen 413 AGGKEITPPFSWIPDKLLHLYYENDLDDR-LLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQSR 490 (1266)
T ss_pred cCcccccccccccchhHHhhHhhccccHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHH
Confidence 01 11111 344445555555666 3334444444332 112 5557789999999999999888766
No 89
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.59 E-value=4.9 Score=51.79 Aligned_cols=168 Identities=18% Similarity=0.107 Sum_probs=102.8
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHH-HHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHH
Q 000834 112 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 190 (1263)
Q Consensus 112 l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~-aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~ 190 (1263)
+.+++=++|.+|+..+-..+.. ..|+..|+. .+|... --|.-+....---+...++.-. ......++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~------G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSL------GEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHH
Confidence 7888889999999887766642 224555553 444444 3444444443222222222211 445667788
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhh
Q 000834 191 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 270 (1263)
Q Consensus 191 lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~ 270 (1263)
+.+-|.|.++.+|-.|+.++..+-..-=++.+++.|...+.|. ++.||..+.-.+.+++.--+..-.-...+..+...
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l 174 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKEL 174 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHH
Confidence 8888999999999888888876543322345555666666675 58888888777777764222100001122334455
Q ss_pred hcCCCHHHHHHHHHHHHHHHHh
Q 000834 271 MTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 271 L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
+.|.+|.|-.+|..+|.++..-
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 175 VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhCCCchHHHHHHHHHHHhchh
Confidence 6799999988888888777643
No 90
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.84 E-value=0.6 Score=35.01 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=27.3
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000834 187 VLSDILKCLGDNKKHMRECTLTVLDAWLAAV 217 (1263)
Q Consensus 187 llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~ 217 (1263)
++|.+++.+.|..+.||.+|..||..+++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999998754
No 91
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.81 E-value=6.7 Score=50.60 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=106.1
Q ss_pred hcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHH
Q 000834 429 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFL 508 (1263)
Q Consensus 429 Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~l 508 (1263)
+.|++=+.|++|+..+...+..+.+ .-..+-=++|.+ ...|.. +.+.+.+ .+..+. .+.+.++...+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-mssLf~dViK~~----~trd~E-lKrL~yl---Yl~~ya----k~~P~~~lLav 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MSSLFPDVIKNV----ATRDVE-LKRLLYL---YLERYA----KLKPELALLAV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHH----HhcCHH-HHHHHHH---HHHHHh----ccCHHHHHHHH
Confidence 7888889999999999888765543 222222233332 222333 3333322 122222 34558899999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHH----hhccCChHhHHHHHHHHHHHHHhhcccccCccchHH
Q 000834 509 PCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILE----GLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQ 584 (1263)
Q Consensus 509 P~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~----glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~ 584 (1263)
+.+..-++|+++-+|-.+ ++.++ ......++++++. .+.+.++.||-....-+..+.+. +...+.......
T Consensus 95 Nti~kDl~d~N~~iR~~A---lR~ls-~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~ 169 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFA---LRTLS-LLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLID 169 (757)
T ss_pred HHHHhhccCCCHHHHHHH---HHHHH-hcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHH
Confidence 999999999999998653 33333 3445556666665 46799999999988877777632 212221111224
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 000834 585 IVASLTAERDGEIRKAALNTLATGYKI 611 (1263)
Q Consensus 585 ~Iak~i~D~d~~VR~AAl~~l~~ly~~ 611 (1263)
....++.|.||.|-.+|+-.+.++|.-
T Consensus 170 ~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 446678899999999999999888765
No 92
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.27 E-value=6.3 Score=53.34 Aligned_cols=133 Identities=15% Similarity=0.221 Sum_probs=100.0
Q ss_pred hccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHh
Q 000834 154 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT 231 (1263)
Q Consensus 154 L~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~--l~~ll~~l~~~L~ 231 (1263)
+...-.+|...|+.||+.++.+ .+.--.-..+--++-.+|-|+-..||+||.+-+-.++-+.. .....+.|.+...
T Consensus 825 l~e~~ialRtkAlKclS~ive~--Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIl 902 (1692)
T KOG1020|consen 825 LGENAIALRTKALKCLSMIVEA--DPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERIL 902 (1692)
T ss_pred hcCchHHHHHHHHHHHHHHHhc--ChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcC
Confidence 3455567899999999999876 11112234566778889999999999999999988876542 3556666777666
Q ss_pred hccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 232 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 232 ~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
+. +.-||+-+++.+.+.-...+.......+|.-++...+|--..|.+-+.+.+..+.
T Consensus 903 Dt--gvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 903 DT--GVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred CC--chhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 53 6889999999998877766644445566666777789999999999999888765
No 93
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.80 E-value=1.2 Score=56.99 Aligned_cols=122 Identities=22% Similarity=0.327 Sum_probs=98.2
Q ss_pred CCccccccCCC---HHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhc--ccc-HHHHHHHHHH
Q 000834 95 LPREDISGKFT---PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSN-KNLVMATLIT 168 (1263)
Q Consensus 95 lprvDI~~kl~---~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~--DsN-~~V~~~AL~~ 168 (1263)
+|-.=|.+.+| +=+++.|+-.+--.|.+.++-+...+.++ ..+.+..++.++..|-..=. |.| ..|...||+|
T Consensus 898 vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqc 976 (1030)
T KOG1967|consen 898 VPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQC 976 (1030)
T ss_pred CCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 55555555554 35678899999999999999999999875 56666657888887776443 444 5577788999
Q ss_pred HHHHHHhcC-chhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000834 169 LGAVASAMG-PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 217 (1263)
Q Consensus 169 l~~LA~alg-~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~ 217 (1263)
+..|.+.+- +.+.+|...++.++...|+|+|--||+.|..|=..|....
T Consensus 977 L~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 977 LNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred HHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 999999775 4578999999999999999999999999999999997654
No 94
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.65 E-value=2.3 Score=42.77 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=78.0
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHH
Q 000834 111 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 190 (1263)
Q Consensus 111 ~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~ 190 (1263)
.-++.+|-.=...+++|.+...+ .++...+++..|-+||+|++..|...+|.+|..++......|...++.-...
T Consensus 9 ATsdd~~p~pgy~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~ 83 (122)
T cd03572 9 ATSDDDEPTPGYLYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQ 83 (122)
T ss_pred HhcCCCCCCchHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHH
Confidence 34566788888888888887753 2334789999999999999999999999999999998888898777755544
Q ss_pred HHHH---hC--------CCcHHHHHHHHHHHHHHHHh
Q 000834 191 ILKC---LG--------DNKKHMRECTLTVLDAWLAA 216 (1263)
Q Consensus 191 lL~k---l~--------DkK~~VR~aa~~aL~a~~~~ 216 (1263)
|-+. -| +-.+.||++|.+++.+++..
T Consensus 84 Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 84 IRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred HHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 4332 12 34568999999999988753
No 95
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.61 E-value=0.24 Score=42.04 Aligned_cols=54 Identities=20% Similarity=0.149 Sum_probs=38.2
Q ss_pred hHhHHHHHHHHHHHHHhhcccccC-ccchHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000834 555 NRTRIECVDLVGFLIDHHGAEISG-QLKSLQIVASLTAERDGEIRKAALNTLATG 608 (1263)
Q Consensus 555 ~rvR~ecL~~L~~lI~~~G~~v~~-~~k~L~~Iak~i~D~d~~VR~AAl~~l~~l 608 (1263)
|++|..++.-|+.+....+-.... ....++.+..++.|.++.||.+|..+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 678999988888744333211111 124557888899999999999999998853
No 96
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=20 Score=45.93 Aligned_cols=198 Identities=12% Similarity=0.103 Sum_probs=124.7
Q ss_pred CHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcC---chh-
Q 000834 105 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG---PAV- 180 (1263)
Q Consensus 105 ~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg---~~f- 180 (1263)
-+++.+.|...+=-.||.|+--..+++. ..|.-..-++...+++|.|.|-.|...++.++..+++.-- ..|
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~ir-----K~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr 218 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIR-----KVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFR 218 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHH-----cCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHH
Confidence 3456677788888889988888888774 2454124456778888888888888888877777776511 112
Q ss_pred ----------------------------hhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc------CchhhHHHH
Q 000834 181 ----------------------------EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------HLDKMVPYV 226 (1263)
Q Consensus 181 ----------------------------~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~------~l~~ll~~l 226 (1263)
+|++..-+--+|.-||-..+...+.--.-|..++..+ |-.-+.|.+
T Consensus 219 ~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V 298 (866)
T KOG1062|consen 219 DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECV 298 (866)
T ss_pred HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 2333333334444456555555555555555555433 344566777
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHccCCCC--------------Cchh---hhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 000834 227 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--------------PDAA---HLLKPASIAMTDKSSDVRKAAEACIVEI 289 (1263)
Q Consensus 227 ~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~--------------~~~~---~ll~pl~~~L~D~~~eVR~aA~~~L~~l 289 (1263)
.+-|.-. +++.+|.-..+.|.+++..-... .+.. .-=.-|+.||.|.+..+|..|.+++-.+
T Consensus 299 ~TI~~I~-~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 299 RTIMDIR-SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHHhcc-CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 7766532 36889999999999998754320 0110 1112388999999999999999998877
Q ss_pred HHhcChh----hhhhhhhcCChh
Q 000834 290 LRAGGQE----TIEKNLKDIQGP 308 (1263)
Q Consensus 290 ~~~vG~~----~i~~~l~~L~~~ 308 (1263)
..--.-+ .+..|+...++.
T Consensus 378 vn~~Nv~~mv~eLl~fL~~~d~~ 400 (866)
T KOG1062|consen 378 VNESNVRVMVKELLEFLESSDED 400 (866)
T ss_pred hccccHHHHHHHHHHHHHhccHH
Confidence 6544433 344466655543
No 97
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.11 E-value=2.3 Score=45.81 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhccc-cchhhHHHHHHHH------------HHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcch
Q 000834 435 KKQVDGLEMLQKALPS-IRKDIIEVLDILL------------RWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTE 501 (1263)
Q Consensus 435 k~Rl~ale~L~~~l~~-~~~~~~~~lDlll------------k~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd 501 (1263)
|-|+.|+.-|...+.. .+..+..+.-.+| --++..++|.+.+|-..++.++..+++..+. .|.-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~---~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP---FLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH---HHHH
Confidence 3567777777666655 2222222221111 0112346899999999999988877753211 0110
Q ss_pred HH-----HHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhh-ccCChHhHHHHHHHHHHHHHhhccc
Q 000834 502 SE-----AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAE 575 (1263)
Q Consensus 502 ~e-----a~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~gl-ksKN~rvR~ecL~~L~~lI~~~G~~ 575 (1263)
.| ...|.| +-..+|. ++.++- ..++..+ .-+++.+-..+++-+..++....+.
T Consensus 78 Ae~~~~~~~sFts-lS~tLa~-----------~i~~lH---------~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~ 136 (182)
T PF13251_consen 78 AEESKGPSGSFTS-LSSTLAS-----------MIMELH---------RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH 136 (182)
T ss_pred HHhcCCCCCCccc-HHHHHHH-----------HHHHHH---------HHHHHHHhcccccHHHHHHHHHHHHHHccCChh
Confidence 00 012222 1222222 221111 1223333 3466777888889898898877766
Q ss_pred ccCc---cchHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000834 576 ISGQ---LKSLQIVASLTAERDGEIRKAALNTLATGYK 610 (1263)
Q Consensus 576 v~~~---~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~ 610 (1263)
.... .+.+..|...+.++|++||-+++.|++.+..
T Consensus 137 rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 137 RLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred hcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 5431 2233677888999999999999999998744
No 98
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.09 E-value=94 Score=40.21 Aligned_cols=69 Identities=20% Similarity=0.204 Sum_probs=49.1
Q ss_pred cCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchH-HHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000834 537 YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGY 609 (1263)
Q Consensus 537 ~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly 609 (1263)
.-|++.+.++....---|..+|++.+..+. +||.+..+....+ -.+..|+.|+|-+||..|.-.+..+-
T Consensus 462 ~~Pskyir~iyNRviLEn~ivRaaAv~ala----Kfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 PNPSKYIRFIYNRVILENAIVRAAAVSALA----KFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCcchhhHHHhhhhhhhhhhhHHHHHHHHH----HHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 345677777777655678889998877665 5564433322333 55688999999999999998888764
No 99
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.02 E-value=83 Score=39.51 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=79.1
Q ss_pred CchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhh--HHHHHHHHhhccCChhHHHHHHHHHHHHHc
Q 000834 177 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKM--VPYVTTALTDAKLGAEGRKDLFDWLSKQLT 252 (1263)
Q Consensus 177 g~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l--~~l--l~~l~~~L~~kk~~p~vR~e~L~~L~~~l~ 252 (1263)
...+++.+..++|++|.+++..-..||..+++.|.-+...+.- +-. ++.|..-+.+.+.++-+|--.+-|+...++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3458899999999999999999999999999999988775531 111 234445554443357799999999988888
Q ss_pred cCCCCCchhhhHHHHHhhhcCCCH---HHHHHHHHHHHHHHHhcC
Q 000834 253 GLSGFPDAAHLLKPASIAMTDKSS---DVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 253 ~~~~~~~~~~ll~pl~~~L~D~~~---eVR~aA~~~L~~l~~~vG 294 (1263)
..+. .+-..+++.++.++..... ++......++..+++...
T Consensus 94 Rl~~-~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 94 RLDD-EERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred cCCH-HHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 7742 2445666668888864432 333333334444454443
No 100
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=87.12 E-value=18 Score=45.29 Aligned_cols=189 Identities=13% Similarity=0.100 Sum_probs=110.4
Q ss_pred HHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHH
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 504 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea 504 (1263)
++..|...+-..-..+++.|...+........ ..-+..++..++...+..|...++..|..++..-...-..+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~--- 117 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD--- 117 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC---
Confidence 44444444433334445555555544322111 2222333444667788888888877544332210000001111
Q ss_pred HhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhc-------CCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhc--cc
Q 000834 505 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFY-------SATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHG--AE 575 (1263)
Q Consensus 505 ~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~-------~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G--~~ 575 (1263)
..+++.++.-++|....|.+.+-.++..++..- ++. ....+..-+.+.|.-+|..+++.+..+..... +.
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~-~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSN-LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcc-hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 347888999999999999999888888876421 111 12333333445488888888887766643221 11
Q ss_pred ccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHHHhc
Q 000834 576 ISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVG 621 (1263)
Q Consensus 576 v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l~ 621 (1263)
.+.....++.+.+.+.+.|.-||-+|++++..+-. .+.-.+|+.
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~yL~ 240 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGLQYLE 240 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHH
Confidence 22122356788888888999999999999999866 555566664
No 101
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.01 E-value=10 Score=47.81 Aligned_cols=195 Identities=18% Similarity=0.215 Sum_probs=121.5
Q ss_pred ccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhc
Q 000834 97 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 176 (1263)
Q Consensus 97 rvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~al 176 (1263)
..|+...+=.-++...++++-++|.-.+.-|..++.+ +.-|...-+..|...|-.|+.|--.+|..+|+-+|..+-. +
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d 156 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-D 156 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-C
Confidence 3344333333456778899999999999999888874 3444433246677888889999999999999999988753 2
Q ss_pred CchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC
Q 000834 177 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 256 (1263)
Q Consensus 177 g~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~ 256 (1263)
..+=+--+..++-.+++ .|..+-||.+|..++.-= . .-+|.|.+--.+- +-..|.-+.. ++++.+..
T Consensus 157 ~~dee~~v~n~l~~liq--nDpS~EVRRaaLsnI~vd--n----sTlp~IveRarDV--~~anRrlvY~---r~lpkid~ 223 (892)
T KOG2025|consen 157 PKDEECPVVNLLKDLIQ--NDPSDEVRRAALSNISVD--N----STLPCIVERARDV--SGANRRLVYE---RCLPKIDL 223 (892)
T ss_pred CCCCcccHHHHHHHHHh--cCCcHHHHHHHHHhhccC--c----ccchhHHHHhhhh--hHHHHHHHHH---Hhhhhhhh
Confidence 22212122233333333 699999999887765421 1 2234555544433 2456665543 44544432
Q ss_pred -CCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCC
Q 000834 257 -FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 306 (1263)
Q Consensus 257 -~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~ 306 (1263)
.-.....+..+-.+|+||.-.||.|+..++..=.-..-...+...+..|+
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ld 274 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLD 274 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhc
Confidence 11233444456668999999999999998864222222234666777776
No 102
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=84.90 E-value=6.7 Score=42.21 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=82.0
Q ss_pred chHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-------hhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC-C
Q 000834 186 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F 257 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~-------~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~-~ 257 (1263)
.++|.+++.+.+.+..-|--|.+++..+++..+-+ .++..|-.+|.++ ++.+...+|..|...+..... .
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr--~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR--DPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhh
Confidence 67889999999999999999999999999884433 3333445666665 699999999888877554432 2
Q ss_pred CchhhhHHHHHhhhc---------------CCCHHHHHHHHHHHHHHHHhcChhhhhh
Q 000834 258 PDAAHLLKPASIAMT---------------DKSSDVRKAAEACIVEILRAGGQETIEK 300 (1263)
Q Consensus 258 ~~~~~ll~pl~~~L~---------------D~~~eVR~aA~~~L~~l~~~vG~~~i~~ 300 (1263)
..+.+....+...++ ....++++.-.++|..+-++-|++++..
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~n 173 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFIN 173 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHH
Confidence 344444444444443 4568899999999999999999876543
No 103
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.89 E-value=3.3 Score=49.16 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=86.7
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCch-hhhhh
Q 000834 106 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSS 184 (1263)
Q Consensus 106 ~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~-f~~~~ 184 (1263)
++++.++.+-|-|.|++|+..|.+++.. ++.+....+.+++.-+..++.|-...|.....+.+..++-.+++. ..+++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 5788999999999999999999999975 444433346788888888899999999999999888887777765 36777
Q ss_pred hchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000834 185 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 185 ~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~ 218 (1263)
..+++-+.-.+...-+.||..+...|+-+++.++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 7777766666666666666666666666666554
No 104
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=84.36 E-value=8.3 Score=40.38 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=36.1
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhc--cCCCCCCchhHHHHHHh
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRG 152 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~--~~i~p~~~~eL~~aLk~ 152 (1263)
+++..|.+.+-|+|.+|+++|..++.... ..+....++.++.+|-.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~ 55 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFR 55 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHH
Confidence 57889999999999999999999997421 33444457888888754
No 105
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=83.93 E-value=21 Score=42.96 Aligned_cols=136 Identities=11% Similarity=0.086 Sum_probs=98.3
Q ss_pred ccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhh--------------
Q 000834 157 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKM-------------- 222 (1263)
Q Consensus 157 sN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~l-------------- 222 (1263)
.-.+++...+.++..+.......|..++...+|.++..+-+.-+.+|.+|...+..+..+++.+..
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~ 225 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLE 225 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccc
Confidence 456688889999999999988889999999999999999999999999999988888766653211
Q ss_pred ----HHHHH---HHH-hhccCChhHHHHHHHHHHHHHccC--CCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 223 ----VPYVT---TAL-TDAKLGAEGRKDLFDWLSKQLTGL--SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 223 ----l~~l~---~~L-~~kk~~p~vR~e~L~~L~~~l~~~--~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
++.+. ..| .+++ ....=..+|.++...+... ..-..+.+++...-.|+++.++.||.+|..+=..++..
T Consensus 226 ~~~~~~~~~~~L~~mi~~~~-~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 226 NGKLIQLYCERLKEMIKSKD-EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred cccHHHHHHHHHHHHHhCcC-CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 11111 112 2211 2334455666777676532 22345677777788899999999999999998888763
Q ss_pred c
Q 000834 293 G 293 (1263)
Q Consensus 293 v 293 (1263)
+
T Consensus 305 ~ 305 (372)
T PF12231_consen 305 S 305 (372)
T ss_pred h
Confidence 3
No 106
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.67 E-value=89 Score=39.12 Aligned_cols=196 Identities=17% Similarity=0.146 Sum_probs=113.1
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHH
Q 000834 424 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 503 (1263)
Q Consensus 424 ~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~e 503 (1263)
.++..+-++|-+-|...++.|.-...--++-....+..++--+..|++|....|-..++..|.. +. .++..|
T Consensus 95 h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~----~Q----e~~~ne 166 (885)
T COG5218 95 HLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY----YQ----EMELNE 166 (885)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH----HH----hccCCh
Confidence 4567778999999988888776554333321112234455555679999999998766654332 22 233334
Q ss_pred HHhHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhccc-ccCccc
Q 000834 504 AAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE-ISGQLK 581 (1263)
Q Consensus 504 a~~~lP~LveKl-GD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~-v~~~~k 581 (1263)
-.-+...|+.-+ .|+-+.||..+- ..+.-.....|++++....-|.-.|-=. -.+++.+.|-- .....|
T Consensus 167 en~~~n~l~~~vqnDPS~EVRr~al------lni~vdnsT~p~IlERarDv~~anRr~v---Y~r~Lp~iGd~~~lsi~k 237 (885)
T COG5218 167 ENRIVNLLKDIVQNDPSDEVRRLAL------LNISVDNSTYPCILERARDVSGANRRMV---YERCLPRIGDLKSLSIDK 237 (885)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHH------HHeeeCCCcchhHHHHhhhhhHHHHHHH---HHHHhhhhcchhhccccc
Confidence 344444444444 577666765422 2222223467899987654444333211 12333343411 011122
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCH-HHHHHhcCCCHHHHHHHHHHHH
Q 000834 582 SLQIVASLTAERDGEIRKAALNTLATGYKILGE-DIWRYVGKLTDAQKSMLDDRFK 636 (1263)
Q Consensus 582 ~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~-~l~~~l~~L~~~~~~~Leer~k 636 (1263)
-+-.+...+.||+-.||+|+..+++..|..--+ ++..+++.|+-...+.+...+|
T Consensus 238 ri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 238 RILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred eehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 233567789999999999999999977776544 3666777766666665555554
No 107
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.65 E-value=17 Score=37.58 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=70.2
Q ss_pred HHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHH
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 504 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea 504 (1263)
....+.+.||..-++-++.+..- +.. .-..++.+..|+...|+.|...+|.+|..++... ++.|...-+
T Consensus 10 T~~~l~~~dw~~ileicD~In~~----~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNC---G~~fh~eva 78 (139)
T cd03567 10 TNPSNREEDWEAIQAFCEQINKE----PEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNC---GERFHSEVG 78 (139)
T ss_pred cCccCCCCCHHHHHHHHHHHHcC----Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc---CHHHHHHHH
Confidence 34456788998777777766532 211 2235677788999999999999999777666543 344544333
Q ss_pred -HhHHHHHHHHhC------CChHHHHHHHHHHHHHHHHhcC
Q 000834 505 -AVFLPCLVEKSG------HNIEKVREKMRELTKQIVNFYS 538 (1263)
Q Consensus 505 -~~~lP~LveKlG------D~K~~vR~~~~~il~~l~~v~~ 538 (1263)
.-|+..|+..+. .....|++++..+++.-...|+
T Consensus 79 s~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 79 KFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 567777776663 2457889998888887777664
No 108
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.38 E-value=11 Score=39.07 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=70.8
Q ss_pred HhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHH-H
Q 000834 426 HRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE-A 504 (1263)
Q Consensus 426 ~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~e-a 504 (1263)
...+...||..-++-++.+..- ... .--.+|.+..|+...|++|...+|.+|..++.... ..|...- .
T Consensus 10 se~l~~~dw~~il~icD~I~~~-~~~-------~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evas 78 (144)
T cd03568 10 DEKLTSENWGLILDVCDKVKSD-ENG-------AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCG---KRFHQEVAS 78 (144)
T ss_pred CccCCCcCHHHHHHHHHHHhcC-Ccc-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHhh
Confidence 3456678998777777766543 221 22356777889999999999999997776655332 2343222 3
Q ss_pred HhHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHhcCCcccHHH
Q 000834 505 AVFLPCLVEKSGH-NIEKVREKMRELTKQIVNFYSATKTLPY 545 (1263)
Q Consensus 505 ~~~lP~LveKlGD-~K~~vR~~~~~il~~l~~v~~~skv~~~ 545 (1263)
..|+..|+..+-+ ....|++++..+++.....|+...-+++
T Consensus 79 k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 120 (144)
T cd03568 79 RDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSL 120 (144)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 5577776555544 4568888888888877777764333333
No 109
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=83.13 E-value=1.3e+02 Score=37.52 Aligned_cols=387 Identities=13% Similarity=0.126 Sum_probs=196.0
Q ss_pred hhccccHHHHHHHHHHHHHHHHh-----cC-----------chhh-hhhhchHHHHHHHhCCCc-------HHHHHHHHH
Q 000834 153 RLYDSNKNLVMATLITLGAVASA-----MG-----------PAVE-KSSKGVLSDILKCLGDNK-------KHMRECTLT 208 (1263)
Q Consensus 153 rL~DsN~~V~~~AL~~l~~LA~a-----lg-----------~~f~-~~~~~llp~lL~kl~DkK-------~~VR~aa~~ 208 (1263)
.+...|-.|...|++.-+.++.. |- .+|. ..+..++|.+|.-|-.+. =++.-+|-.
T Consensus 271 ~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~s 350 (858)
T COG5215 271 FMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASS 350 (858)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHH
Confidence 35788999999998755444431 11 1122 235568999888764322 257789999
Q ss_pred HHHHHHHhcC---chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC---CCchhhhHHHHHhhhcCCCHHHHHHH
Q 000834 209 VLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAA 282 (1263)
Q Consensus 209 aL~a~~~~~~---l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~eVR~aA 282 (1263)
||..+.+.+| +..+++++...+.+. +|.-|....--+...+..-.. .......++.+...+.|+.--|.+.+
T Consensus 351 CLqlfaq~~gd~i~~pVl~FvEqni~~~--~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~tt 428 (858)
T COG5215 351 CLQLFAQLKGDKIMRPVLGFVEQNIRSE--SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTT 428 (858)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHhccCc--hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHH
Confidence 9999998886 455666666666664 688887764333333321110 01122333346666789999999999
Q ss_pred HHHHHHHHHhcChhhhhhhhhcCChhHHHHHHHHhhhcCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q 000834 283 EACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKG 362 (1263)
Q Consensus 283 ~~~L~~l~~~vG~~~i~~~l~~L~~~~~~~ilek~~~~~~~k~s~~p~sk~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~ 362 (1263)
..|++.+..++.. .+.+ ..+|.. ...+.+.-+ .. -| +..
T Consensus 429 Awc~g~iad~va~-~i~p-~~Hl~~-~vsa~liGl------~D--~p-----------------~~~------------- 467 (858)
T COG5215 429 AWCFGAIADHVAM-IISP-CGHLVL-EVSASLIGL------MD--CP-----------------FRS------------- 467 (858)
T ss_pred HHHHHHHHHHHHH-hcCc-cccccH-HHHHHHhhh------hc--cc-----------------hHH-------------
Confidence 9999998877652 2222 112221 111111000 00 00 000
Q ss_pred CCCCccccchhhhhhhhhhhcccCC-chhHHhhhhhcccccCCCchhHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHH
Q 000834 363 ARPESIMSVQDFAVQSQALLNVKDS-NKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGL 441 (1263)
Q Consensus 363 ~~~~~~~s~~~~~~~s~pl~~~~~~-~k~~~~~~~~~kw~f~~p~~e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~al 441 (1263)
.+. +=...++.+. -+.+++ .+.+-.-+.+.+-..+ +. .+.+...++..|..+.
T Consensus 468 --------~nc----sw~~~nlv~h~a~a~~~--------~~S~l~~fY~ai~~~L---v~---~t~~~~Ne~n~R~s~f 521 (858)
T COG5215 468 --------INC----SWRKENLVDHIAKAVRE--------VESFLAKFYLAILNAL---VK---GTELALNESNLRVSLF 521 (858)
T ss_pred --------hhh----HHHHHhHHHhhhhhhcc--------ccchhHHHHHHHHHHH---HH---HHHhhccchhHHHHHH
Confidence 000 0000000000 000000 0000000011111100 10 1223356788899888
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHH
Q 000834 442 EMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEK 521 (1263)
Q Consensus 442 e~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~ 521 (1263)
..|...+.-.++...+.+--+..|+..++ |.-.+|....|..=..+. +.+ -.+. ..-++..++-+.|-..+.
T Consensus 522 saLgtli~~~~d~V~~~~a~~~~~~~~kl-~~~isv~~q~l~~eD~~~--~~e---lqSN--~~~vl~aiir~~~~~ie~ 593 (858)
T COG5215 522 SALGTLILICPDAVSDILAGFYDYTSKKL-DECISVLGQILATEDQLL--VEE---LQSN--YIGVLEAIIRTRRRDIED 593 (858)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhHHHHH--HHH---HHHH--HHHHHHHHHHhcCCCccc
Confidence 88888775544443333333444444343 222333333332111110 000 0111 134556667777776666
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHH-HHHHhhcccccCccchHHHHHHhhcCCCHHHHHH
Q 000834 522 VREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG-FLIDHHGAEISGQLKSLQIVASLTAERDGEIRKA 600 (1263)
Q Consensus 522 vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~-~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~A 600 (1263)
|.+..-+++-.+.+...++.+++-+...+ .-|. ++=++|..- -.+..|.+.+.++-.|.-|-+.
T Consensus 594 v~D~lm~Lf~r~les~~~t~~~~dV~~aI------------sal~~sl~e~Fe~y---~~~fiPyl~~aln~~d~~v~~~ 658 (858)
T COG5215 594 VEDQLMELFIRILESTKPTTAFGDVYTAI------------SALSTSLEERFEQY---ASKFIPYLTRALNCTDRFVLNS 658 (858)
T ss_pred HHHHHHHHHHHHHhccCCchhhhHHHHHH------------HHHHHHHHHHHHHH---HhhhhHHHHHHhcchhHHHHHH
Confidence 66666666555555444555555544322 1111 111223211 1244588888889999999999
Q ss_pred HHHHHHHHHHHHCHHHHHHhcCCCHHHHHHH
Q 000834 601 ALNTLATGYKILGEDIWRYVGKLTDAQKSML 631 (1263)
Q Consensus 601 Al~~l~~ly~~~G~~l~~~l~~L~~~~~~~L 631 (1263)
|++++|.+...+|.++..|-..+-...-+.|
T Consensus 659 avglvgdlantl~~df~~y~d~~ms~LvQ~l 689 (858)
T COG5215 659 AVGLVGDLANTLGTDFNIYADVLMSSLVQCL 689 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999998887654444444433
No 110
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.66 E-value=11 Score=51.58 Aligned_cols=186 Identities=12% Similarity=0.091 Sum_probs=131.8
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCC-chhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~-~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
.+++++.-++=+.|.-||.++..+++..+-... .+ +.......++.+.|-+..|...+.+++..+..++++...||++
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK 123 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEEL-KGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLK 123 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHH-hhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 567888889999999999999999974211110 02 4566778888889999999999999999999999999999999
Q ss_pred chHHHHHHHhCCCcHHHHHHHHHHHHHHHHh---------cCchhhHHHHHH-------------------HHhhccCCh
Q 000834 186 GVLSDILKCLGDNKKHMRECTLTVLDAWLAA---------VHLDKMVPYVTT-------------------ALTDAKLGA 237 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~---------~~l~~ll~~l~~-------------------~L~~kk~~p 237 (1263)
.++|..+-..-|.-..|-.+|.++....+.. |+ ..+.+.+.. .++.+ ..
T Consensus 124 ~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~-~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k--~~ 200 (1312)
T KOG0803|consen 124 SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCD-PEIFYLVTEILVKETPDSLSDLRTLSSEELESK--YQ 200 (1312)
T ss_pred hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhh-HHHHHHHHHHHhccCccccchhhhcchHHHHHh--hH
Confidence 9999999988899988888888887655431 11 011111111 12222 24
Q ss_pred hHHHHHHHHHHHHHccCCCCC-------chhhhHHH--HHhhhcCCCHHHHHHHHHHHHHHHHhcChh
Q 000834 238 EGRKDLFDWLSKQLTGLSGFP-------DAAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQE 296 (1263)
Q Consensus 238 ~vR~e~L~~L~~~l~~~~~~~-------~~~~ll~p--l~~~L~D~~~eVR~aA~~~L~~l~~~vG~~ 296 (1263)
++....|..+...+...+... ..+.+... +-+.+.++++.||.+..+++-.++..+-..
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 555666666666664433211 12333333 455679999999999999999998776654
No 111
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.49 E-value=39 Score=42.95 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=119.5
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHH
Q 000834 424 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 503 (1263)
Q Consensus 424 ~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~e 503 (1263)
.++...-++|-+-|-..+..|...+..+..-....++.+..-+..|++|.-+.|-..++-.| ..+.+. .. + +
T Consensus 89 hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aL----srlQ~d--~~-d-e 160 (892)
T KOG2025|consen 89 HLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLAL----SRLQGD--PK-D-E 160 (892)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHH----HHHhcC--CC-C-C
Confidence 45666778888999999998888876544333456788888888999999999877655432 223321 11 1 1
Q ss_pred HHhHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccch
Q 000834 504 AAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS 582 (1263)
Q Consensus 504 a~~~lP~LveKl-GD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~ 582 (1263)
-..+...+..-+ -|+.+.||..+-.. +.+-.+-+|+|++..+.-+.-.|-=....+ +++..+......+-
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsn------I~vdnsTlp~IveRarDV~~anRrlvY~r~---lpkid~r~lsi~kr 231 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSN------ISVDNSTLPCIVERARDVSGANRRLVYERC---LPKIDLRSLSIDKR 231 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHh------hccCcccchhHHHHhhhhhHHHHHHHHHHh---hhhhhhhhhhHHHH
Confidence 122333444433 57777888764333 344556788998876555544443222221 12111111111122
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHH-HHHHhc-----CCCHHHHHHHHHHHH
Q 000834 583 LQIVASLTAERDGEIRKAALNTLATGYKILGED-IWRYVG-----KLTDAQKSMLDDRFK 636 (1263)
Q Consensus 583 L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~-l~~~l~-----~L~~~~~~~Leer~k 636 (1263)
.-.+...++||+-+||+|+...+..-+.-..+. +..++. +=++...+.|++-|+
T Consensus 232 v~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 232 VLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 355677899999999999999998655555442 444443 334667888888886
No 112
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.45 E-value=25 Score=43.57 Aligned_cols=191 Identities=18% Similarity=0.202 Sum_probs=120.2
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 106 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 106 ~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
.-++..+++|+-++|+-.+.-|.-+.+. .+-|...-+..|..-|..|+-|--+.|...|+.++..+- .|.-+=+....
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q-e~~~neen~~~ 171 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ-EMELNEENRIV 171 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccCChHHHHH
Confidence 3567888999999999999988877753 223322224567778888999999999999999998875 33333344444
Q ss_pred chHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC--Cchhhh
Q 000834 186 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHL 263 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~--~~~~~l 263 (1263)
.++-.+++ .|...-||.+|.--+ .+...+ .+++.+--.+- +..-|.-+ -.++++.++.. .+..+-
T Consensus 172 n~l~~~vq--nDPS~EVRr~allni--~vdnsT----~p~IlERarDv--~~anRr~v---Y~r~Lp~iGd~~~lsi~kr 238 (885)
T COG5218 172 NLLKDIVQ--NDPSDEVRRLALLNI--SVDNST----YPCILERARDV--SGANRRMV---YERCLPRIGDLKSLSIDKR 238 (885)
T ss_pred HHHHHHHh--cCcHHHHHHHHHHHe--eeCCCc----chhHHHHhhhh--hHHHHHHH---HHHHhhhhcchhhccccce
Confidence 44444443 577778887764222 222222 34444433332 23344444 45677777532 233344
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChhHHH
Q 000834 264 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 311 (1263)
Q Consensus 264 l~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~~~~ 311 (1263)
+..+--.|+|+.-.||.|+..++..-...--.-.+...+..|+-.+..
T Consensus 239 i~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~s 286 (885)
T COG5218 239 ILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRS 286 (885)
T ss_pred ehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHH
Confidence 444455799999999999999988655444334566667777754443
No 113
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.20 E-value=8.7 Score=47.44 Aligned_cols=179 Identities=14% Similarity=0.207 Sum_probs=122.5
Q ss_pred HHHhcCCCC-hhHHHHHHHHHHHHHHHhccCCCCC--CchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhh-
Q 000834 108 LVKSLESPD-WKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS- 183 (1263)
Q Consensus 108 ll~~l~dk~-WK~RkEaLe~L~~il~~a~~~i~p~--~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~- 183 (1263)
++..+...+ -.....+.-.|..++.. +.-.|. .+..++.+|...+.+.+..|..-|+-+|..|..+-.....--
T Consensus 199 Ll~~l~~~~~~~~lRn~tW~LsNlcrg--k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi 276 (514)
T KOG0166|consen 199 LLRLLNKSDKLSMLRNATWTLSNLCRG--KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI 276 (514)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHcC--CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 555554433 46777888888888864 322332 257788899999999999999999999999987755444332
Q ss_pred hhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC
Q 000834 184 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 256 (1263)
Q Consensus 184 ~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~-------l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~ 256 (1263)
-..++|.+++.|+..+..|+..|..++-.++.... -...++.|...|... +....|+|+. |....+..-..
T Consensus 277 ~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s-~~~~ikkEAc-W~iSNItAG~~ 354 (514)
T KOG0166|consen 277 DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS-PKESIKKEAC-WTISNITAGNQ 354 (514)
T ss_pred HccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC-cchhHHHHHH-HHHHHhhcCCH
Confidence 23789999999999999999888877766542211 123556666666522 2345777765 76655554221
Q ss_pred -C--C-chhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 257 -F--P-DAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 257 -~--~-~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
. . -...++++++.+|....-+.|+.|.-++..+.
T Consensus 355 ~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 355 EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 0 0 12356677899999999999999998887654
No 114
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=81.96 E-value=12 Score=44.14 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=57.0
Q ss_pred chhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhh--hhhchHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhc
Q 000834 143 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK--SSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAV 217 (1263)
Q Consensus 143 ~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~--~~~~llp~lL~kl~-DkK~~VR~aa~~aL~a~~~~~ 217 (1263)
-.+.+.+|.+||+..+.+|+..||.+++.++.-.|+.|.. ..+.|..-+...+. ..-..|++.....+..|.+.+
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999998754 44555555555555 333456776666666666644
No 115
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.92 E-value=9.9 Score=50.46 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHH
Q 000834 408 EQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPE 487 (1263)
Q Consensus 408 e~ve~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~ 487 (1263)
++.+.++.=|...|..-++.+--+-+...|...+++|.-|+.+-+..+. -|..+||+.+.+.|.|.+|-++|+..|..
T Consensus 275 e~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl--~dsYLKYiGWtLsDk~~~VRl~~lkaL~~ 352 (1048)
T KOG2011|consen 275 EQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL--SDSYLKYIGWTLSDKNGTVRLRCLKALIK 352 (1048)
T ss_pred HHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh--cchHHHHhcceeecCccHHHHHHHHHHHH
Confidence 4444454444445555556666666778999999999999988776555 47899999999999999999999999888
Q ss_pred HHHH
Q 000834 488 LFDT 491 (1263)
Q Consensus 488 l~~~ 491 (1263)
++..
T Consensus 353 L~e~ 356 (1048)
T KOG2011|consen 353 LYEK 356 (1048)
T ss_pred HHhc
Confidence 8764
No 116
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.57 E-value=1.8e+02 Score=37.78 Aligned_cols=435 Identities=16% Similarity=0.174 Sum_probs=214.2
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
++-.++.++.=+.|++|+..+..-+. .+.|+..|+.-+-+.+.-.|.-+.... -+-..--+.+.+. ....
T Consensus 17 elks~l~s~~~~kr~~a~kkvIa~Mt------~G~DvSslF~dvvk~~~T~dlelKKlv--yLYl~nYa~~~P~--~a~~ 86 (734)
T KOG1061|consen 17 ELKSQLNSQSKEKRKDAVKKVIAYMT------VGKDVSSLFPDVVKCMQTRDLELKKLV--YLYLMNYAKGKPD--LAIL 86 (734)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCc------cCcchHhhhHHHHhhcccCCchHHHHH--HHHHHHhhccCch--HHHh
Confidence 44555554444888888776555442 112566666555444432332222222 2222222333332 3456
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH----hhccCChhHHHHHHHHHHHHHccCCCCCchhh
Q 000834 187 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 262 (1263)
Q Consensus 187 llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L----~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ 262 (1263)
.+..++.-++|.++.+|..|..++- +++.+.+.+.+...| .++ .|-+|..+.-.++.....-+.......
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~----~l~v~~i~ey~~~Pl~~~l~d~--~~yvRktaa~~vakl~~~~~~~~~~~g 160 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMG----CLRVDKITEYLCDPLLKCLKDD--DPYVRKTAAVCVAKLFDIDPDLVEDSG 160 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhcee----eEeehHHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhhcCChhhccccc
Confidence 7788888999999999999887765 345566666665554 444 588888876555444432222223345
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCh--------hhhhhhhhcCC---hhHHHHHHHHhhhcCCCccCCCCCC
Q 000834 263 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ--------ETIEKNLKDIQ---GPALALILERIKLNGASQVSMGPTS 331 (1263)
Q Consensus 263 ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~--------~~i~~~l~~L~---~~~~~~ilek~~~~~~~k~s~~p~s 331 (1263)
++..+...+-|.++.|=..|..+|.++...-.. ..+.+++..|. .=.+-.|++..-...|... .+..
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~ 238 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAE 238 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHH
Confidence 555566677799999999999999988754321 11122222221 1111122222111000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccccchhhhhhhhhhhcccCCchhHHhhhhhcccccCCCchhHHH
Q 000834 332 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQ 411 (1263)
Q Consensus 332 k~~sk~~~~~s~~~~k~~~~~~s~r~~~~~~~~~~~~~s~~~~~~~s~pl~~~~~~~k~~~~~~~~~kw~f~~p~~e~ve 411 (1263)
.-..+. .++-.-+.+ + +-.... |.-.. + .....
T Consensus 239 ---~i~~r~-------------~p~Lqh~n~---a-------vvlsav---------Kv~l~--------~----~~~~~ 271 (734)
T KOG1061|consen 239 ---DICERL-------------TPRLQHANS---A-------VVLSAV---------KVILQ--------L----VKYLK 271 (734)
T ss_pred ---HHHHHh-------------hhhhccCCc---c-------eEeehH---------HHHHH--------H----HHHHH
Confidence 000000 000000000 0 000000 00000 0 01111
Q ss_pred HHHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHH
Q 000834 412 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDT 491 (1263)
Q Consensus 412 ~L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~ 491 (1263)
+....+...+.+.++..|.+.. ...--++..+.-++...+. .+..-.+.+.-++.|.- -|-...|+++..+...
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~----~~~~~~~~Ff~kynDPi-YvK~eKleil~~la~~ 345 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE----ILKVEIKVFFCKYNDPI-YVKLEKLEILIELAND 345 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH----HHHhHhHeeeeecCCch-hhHHHHHHHHHHHhhH
Confidence 2233444445555666666655 6666677777766665443 12222233322333321 1222345544433321
Q ss_pred HhhcCCCcchHHHHhHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHH
Q 000834 492 LRDEGYSLTESEAAVFLPCLVEKSGHN-IEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 570 (1263)
Q Consensus 492 L~~~~~~lsd~ea~~~lP~LveKlGD~-K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~ 570 (1263)
.-..-++.-|.+=.-+. .+-+|+.++.+=+....+.....++..+++.++-|-.-+.+|++..+..++.
T Consensus 346 ----------~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 346 ----------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred ----------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 00111222232221111 2456666776665555565557789999999988888888999999888887
Q ss_pred hhcccccCccchH-HHHHHhhcC-CCHHHHHHHHHHHHHHHHHHCHH---HHHHhcCCCHH
Q 000834 571 HHGAEISGQLKSL-QIVASLTAE-RDGEIRKAALNTLATGYKILGED---IWRYVGKLTDA 626 (1263)
Q Consensus 571 ~~G~~v~~~~k~L-~~Iak~i~D-~d~~VR~AAl~~l~~ly~~~G~~---l~~~l~~L~~~ 626 (1263)
.|.-. .+.+ ..+...+.. .+|+.|.|-+=.+|+--..+.+. +..|+++..+.
T Consensus 416 kyP~~----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE 472 (734)
T KOG1061|consen 416 KYPNK----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDE 472 (734)
T ss_pred cCCCc----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccc
Confidence 77622 1222 334444433 67777777666666655555443 55566665443
No 117
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.41 E-value=6.1 Score=51.08 Aligned_cols=139 Identities=20% Similarity=0.196 Sum_probs=102.1
Q ss_pred CCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccC--CCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhh
Q 000834 104 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKR--IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 181 (1263)
Q Consensus 104 l~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~--i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~ 181 (1263)
|-+.+.+.+....--+|-.-++.|-.+++. .|+ +.| ++..|...|-+.+.=.+.-|...+++++..+....+.=..
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~-vP~~vllp-~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTN-VPKQVLLP-QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhc-CCHHhhcc-chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 344455555544455555666666666653 232 333 3677888888878766677778889999999998888889
Q ss_pred hhhhchHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhhccCChhHHHHHHHH
Q 000834 182 KSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDW 246 (1263)
Q Consensus 182 ~~~~~llp~lL~kl~DkK---~~VR~aa~~aL~a~~~~~~l-------~~ll~~l~~~L~~kk~~p~vR~e~L~~ 246 (1263)
.|+..++|-++.--.|.+ ..||..|.+||.++.+..+. +.++..|...|.+|| -.+|+++.+.
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK--RlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK--RLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH--HHHHHHHHHH
Confidence 999999999999888777 78999999999999985532 456666777777764 6799998654
No 118
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.24 E-value=1.3e+02 Score=39.00 Aligned_cols=122 Identities=12% Similarity=0.216 Sum_probs=67.6
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHhcCCcc------cHHHHHHhhc-cCChHhHHHHHHHHHHHHHhhcccc--------
Q 000834 512 VEKSGHNIEKVREKMRELTKQIVNFYSATK------TLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEI-------- 576 (1263)
Q Consensus 512 veKlGD~K~~vR~~~~~il~~l~~v~~~sk------v~~~ll~glk-sKN~rvR~ecL~~L~~lI~~~G~~v-------- 576 (1263)
+--+|.......+....++.+++.-.-.++ +++-+..-+. --|+.-|.-.++.|++++..-.-+.
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L 337 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNML 337 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhH
Confidence 334566666666667777776665433222 3333332221 3455556666666666654322111
Q ss_pred ---cC--ccchH---HHHHHhhcCCCHHHHHHHHHHHHHHHHHHCH--------HHHHHhcCCCHHHHHHHHHHHH
Q 000834 577 ---SG--QLKSL---QIVASLTAERDGEIRKAALNTLATGYKILGE--------DIWRYVGKLTDAQKSMLDDRFK 636 (1263)
Q Consensus 577 ---~~--~~k~L---~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~--------~l~~~l~~L~~~~~~~Leer~k 636 (1263)
.+ +..+. ..|..|+.|.|..+|.-|+.+.- .++.+ ++..|+.+-++--+..+-.++-
T Consensus 338 ~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~---~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 338 LRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSY---ALVNESNVRVMVKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred HhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH---HHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 00 11111 57889999999999999998864 44433 3445665555555555555553
No 119
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.83 E-value=9.2 Score=36.58 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=67.4
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
..++.+.|..-=.|..||..|.+++... .....+...++..+...+.|...-|-..|++++..||.... ..
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~--~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------~~ 77 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESK--SEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------DE 77 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------HH
Confidence 4567788988899999999999999853 21222467788888889999999999999999999987754 45
Q ss_pred hHHHHHHHhCCCc
Q 000834 187 VLSDILKCLGDNK 199 (1263)
Q Consensus 187 llp~lL~kl~DkK 199 (1263)
++|.+++.+.|.+
T Consensus 78 vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 78 VLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHhCcc
Confidence 7888888877654
No 120
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.82 E-value=9.4 Score=48.64 Aligned_cols=175 Identities=16% Similarity=0.179 Sum_probs=116.2
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
.++..++|.+|..|--|+.....+=- +++ .+-++.-|.+.+.|.+.-|...+.-++..+-.-=..-+ +...
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~v---~~i----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~--~~~g 160 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLRV---DKI----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV--EDSG 160 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEee---hHH----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc--cccc
Confidence 57788999999999999886543311 111 35678888999999999999988777766533221112 3456
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc---Cch----hhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCc
Q 000834 187 VLSDILKCLGDNKKHMRECTLTVLDAWLAAV---HLD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 259 (1263)
Q Consensus 187 llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~---~l~----~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~ 259 (1263)
+++.+-+-+.|.++.|...|..+|..+.+.- ++- .++..+.+++..- +-=.+..+|+.+++.++.- ..+
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec--~EW~qi~IL~~l~~y~p~d--~~e 236 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC--TEWGQIFILDCLAEYVPKD--SRE 236 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh--hhhhHHHHHHHHHhcCCCC--chh
Confidence 7777777888999999999999999999854 222 2233333333221 1114556666666665422 134
Q ss_pred hhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 000834 260 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 260 ~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG 294 (1263)
...++.-+...|.+.++.|==.|.+++-.++..+.
T Consensus 237 a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 237 AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 55667778888999998887777777665554443
No 121
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=79.91 E-value=7.6 Score=37.13 Aligned_cols=77 Identities=19% Similarity=0.156 Sum_probs=60.6
Q ss_pred cHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHH
Q 000834 542 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 618 (1263)
Q Consensus 542 v~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~ 618 (1263)
.+..+++.+.+.-+-+|+.+|..|..+|++....+....+.+.....++.|.|+-|=-+|+++++++-...++.+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 35556666778888899999999999999877222222345577788999999999999999999998888876444
No 122
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=59 Score=44.91 Aligned_cols=182 Identities=17% Similarity=0.153 Sum_probs=114.3
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhccccchhhH-HHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchH
Q 000834 424 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 502 (1263)
Q Consensus 424 ~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~-~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ 502 (1263)
.+.+.|..+|-..+++|+.+|.+++.....+.. ..+-...+.+.....|-+.+|-.+..+++..++..+... ++++
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~---lsp~ 121 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK---LSPF 121 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH---hhHH
Confidence 466778889999999999999999976543222 212223333344668999999999999888888777654 4444
Q ss_pred HHHhHHHHHHHHhCCChHHHHHHHHHHHHH---------HHHhcCCcccHHHHHHh-------------------hccCC
Q 000834 503 EAAVFLPCLVEKSGHNIEKVREKMRELTKQ---------IVNFYSATKTLPYILEG-------------------LRSKN 554 (1263)
Q Consensus 503 ea~~~lP~LveKlGD~K~~vR~~~~~il~~---------l~~v~~~skv~~~ll~g-------------------lksKN 554 (1263)
...++|...-=.=|.--.|..++.+.++. ++..+.+. ++.++.+. +.+|-
T Consensus 122 -LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~-i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~ 199 (1312)
T KOG0803|consen 122 -LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPE-IFYLVTEILVKETPDSLSDLRTLSSEELESKY 199 (1312)
T ss_pred -HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHH-HHHHHHHHHhccCccccchhhhcchHHHHHhh
Confidence 34444444222223222333333333221 22222221 33333331 45788
Q ss_pred hHhHHHHHHHHHHHHHhhcccc--c---CccchH---HHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000834 555 NRTRIECVDLVGFLIDHHGAEI--S---GQLKSL---QIVASLTAERDGEIRKAALNTLATGYK 610 (1263)
Q Consensus 555 ~rvR~ecL~~L~~lI~~~G~~v--~---~~~k~L---~~Iak~i~D~d~~VR~AAl~~l~~ly~ 610 (1263)
.|+...||..+..++..+|-.- . ...|.+ +.+.+.+.+..++||.+.++++-.+-.
T Consensus 200 ~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~ 263 (1312)
T KOG0803|consen 200 QRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLID 263 (1312)
T ss_pred HHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHh
Confidence 8999999999999998888431 1 113443 788999999999999999998766533
No 123
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.76 E-value=1.3e+02 Score=34.51 Aligned_cols=143 Identities=16% Similarity=0.221 Sum_probs=92.8
Q ss_pred HHhhhcCccHHHHHHHHHHHHHhccccchhhH--HHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchH
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDII--EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 502 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~--~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ 502 (1263)
+-.-|.+.|+..|.+|+.-|...+..-+.... .....++.+++-|+.|... +.-+|+-+..++. + ..++..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~--~~~~l~gl~~L~~-~----~~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC--VQPALKGLLALVK-M----KNFSPE 76 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh--HHHHHHHHHHHHh-C----cCCChh
Confidence 44567899999999999999998877654322 3467889999889966432 3333554444442 1 246666
Q ss_pred HHHhHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhcCCc------ccHHHHHHhh-ccCChHhHHHHHHHHHHHHHhhc
Q 000834 503 EAAVFLPCLVEKSGH--NIEKVREKMRELTKQIVNFYSAT------KTLPYILEGL-RSKNNRTRIECVDLVGFLIDHHG 573 (1263)
Q Consensus 503 ea~~~lP~LveKlGD--~K~~vR~~~~~il~~l~~v~~~s------kv~~~ll~gl-ksKN~rvR~ecL~~L~~lI~~~G 573 (1263)
.+..++-.++++.-. --...|..+-.++..+...+... ..+.-+++.+ .-|.||.-.-+.+.+..++..|.
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 677788888776432 23556777888888777655221 1222222223 46899988888888877776665
Q ss_pred c
Q 000834 574 A 574 (1263)
Q Consensus 574 ~ 574 (1263)
+
T Consensus 157 ~ 157 (262)
T PF14500_consen 157 I 157 (262)
T ss_pred c
Confidence 3
No 124
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.68 E-value=14 Score=44.00 Aligned_cols=109 Identities=17% Similarity=0.261 Sum_probs=89.4
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc------
Q 000834 146 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL------ 219 (1263)
Q Consensus 146 L~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l------ 219 (1263)
-..-|..++..-|.+|...|+.-+..+...--.....+...+++.+.+..-|.-..||++...+++.++.....
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 34555566778999999999999998888844556678999999999999999999999999999997765432
Q ss_pred -hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC
Q 000834 220 -DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 256 (1263)
Q Consensus 220 -~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~ 256 (1263)
.-+++++..+|.|- .|.+|...+.||...+..+++
T Consensus 139 ~~l~~~yi~~AMThi--t~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHI--TPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHHHHHHHHhhc--cHHHHHhhHHHHHHHHHHcCh
Confidence 23566777888886 699999999999988887764
No 125
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=78.57 E-value=26 Score=40.65 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=85.8
Q ss_pred HHHHhHHHHHHHHhhcCCCcchHH-HHhHHHHHHHH-hCCChHHHHHHHHHHHHHHHHhcC--CcccHHHHHHhhccCCh
Q 000834 480 KVLEFLPELFDTLRDEGYSLTESE-AAVFLPCLVEK-SGHNIEKVREKMRELTKQIVNFYS--ATKTLPYILEGLRSKNN 555 (1263)
Q Consensus 480 k~Le~L~~l~~~L~~~~~~lsd~e-a~~~lP~LveK-lGD~K~~vR~~~~~il~~l~~v~~--~skv~~~ll~glksKN~ 555 (1263)
+||.++..+++... ..+.+.- ...++..|+.. +-.....||+.+-.++...|.... +...++.+...++....
T Consensus 2 kcL~i~~~lL~~~~---~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~ 78 (298)
T PF12719_consen 2 KCLSITQSLLENVS---SSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDE 78 (298)
T ss_pred cHHHHHHHHHHhcc---ccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCH
Confidence 67877777776544 2344422 23556666543 333335899988888866554322 22345566666755588
Q ss_pred HhHHHHHHHHHHHHHhhcccccC-cc---------chHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000834 556 RTRIECVDLVGFLIDHHGAEISG-QL---------KSLQIVASLTAERDGEIRKAALNTLATG 608 (1263)
Q Consensus 556 rvR~ecL~~L~~lI~~~G~~v~~-~~---------k~L~~Iak~i~D~d~~VR~AAl~~l~~l 608 (1263)
.+|..++..+..++..||..... .. ..++.+.+.+.+.++++|..|...++.+
T Consensus 79 ~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 79 EVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999987653 11 2237778888888999999999998876
No 126
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.06 E-value=7.1 Score=42.24 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=57.8
Q ss_pred cccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCH
Q 000834 540 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 614 (1263)
Q Consensus 540 skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~ 614 (1263)
++.++.|++.+-+.+..+|..+++.+..++ +.|+- .|...+|.+..+..|.|+.+|+.|..++..++.-.+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il-~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELIL-RQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 346778888778999999999999996555 57854 3556679999999999999999999999887654443
No 127
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=77.66 E-value=86 Score=36.74 Aligned_cols=184 Identities=19% Similarity=0.216 Sum_probs=90.3
Q ss_pred HHHHHHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchh-hHHHHH--HHHHHHHHhhcCchHHHHHHHHHhHHHH-
Q 000834 413 LENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD-IIEVLD--ILLRWFVLQFCKSNTTCLLKVLEFLPEL- 488 (1263)
Q Consensus 413 L~~q~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~-~~~~lD--lllk~l~lrl~DtN~qV~~k~Le~L~~l- 488 (1263)
+++++..-+ +.+..+|||.|....+.|.-.+++++...... .....| .+-|++- |.|.+ -...|+|=...
T Consensus 65 meqq~~~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfve--fm~~~---q~~mlqfEAaWa 138 (526)
T COG5064 65 MEQQFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVE--FMDEI---QRDMLQFEAAWA 138 (526)
T ss_pred hhHHhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHH--HHHhc---chhHHHHHHHHH
Confidence 455665555 45889999999999999999999998654321 111121 2222221 11111 11122221111
Q ss_pred HHHHhhcCCCcchHH-HHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcc-cHHHHHH---------hhccCCh-H
Q 000834 489 FDTLRDEGYSLTESE-AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK-TLPYILE---------GLRSKNN-R 556 (1263)
Q Consensus 489 ~~~L~~~~~~lsd~e-a~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~sk-v~~~ll~---------glksKN~-r 556 (1263)
+..+..-...-+.-. -.-.+|.++..+-+..+.||+.+-=.+..+ .+-+. +-.|+++ -+.+.-. -
T Consensus 139 lTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNi---AGDS~~~RD~vL~~galeplL~ll~ss~~~i 215 (526)
T COG5064 139 LTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNI---AGDSEGCRDYVLQCGALEPLLGLLLSSAIHI 215 (526)
T ss_pred HhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccc---cCCchhHHHHHHhcCchHHHHHHHHhccchH
Confidence 111110000000000 023579999999999889998755444332 22222 2223332 2322111 1
Q ss_pred hHHHHHHHHHHHHHhhcccccC----ccchHHHHHHhhcCCCHHHHHHHHHHHH
Q 000834 557 TRIECVDLVGFLIDHHGAEISG----QLKSLQIVASLTAERDGEIRKAALNTLA 606 (1263)
Q Consensus 557 vR~ecL~~L~~lI~~~G~~v~~----~~k~L~~Iak~i~D~d~~VR~AAl~~l~ 606 (1263)
.-..-..|.-+=+.+ |-+... -.++|+.++|+|..+|++|---|.=++.
T Consensus 216 smlRn~TWtLSNlcR-GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 216 SMLRNATWTLSNLCR-GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHhHHHHHHhhC-CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 112234443222211 211110 1367899999999999998666544443
No 128
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=77.29 E-value=6.1 Score=49.85 Aligned_cols=191 Identities=20% Similarity=0.236 Sum_probs=123.3
Q ss_pred CCccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCc-hhHHHHHHhhhccccHHHHHHHHHHHHHHH
Q 000834 95 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVA 173 (1263)
Q Consensus 95 lprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~-~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA 173 (1263)
+...+...++-+-++..++..+=..|.-=|+.+.+.+. .+.+.-+ ..++.-+...+.|.|.-++..++.++..||
T Consensus 322 ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 322 LDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLA 397 (690)
T ss_pred ccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 33444666677778888899999999999999999885 3444323 567788888899999999999999999999
Q ss_pred HhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch---hh-HHHHHHHHhhccCChhHHHHHHHHHHH
Q 000834 174 SAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD---KM-VPYVTTALTDAKLGAEGRKDLFDWLSK 249 (1263)
Q Consensus 174 ~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~---~l-l~~l~~~L~~kk~~p~vR~e~L~~L~~ 249 (1263)
..+++. ..-..++-.+-..=.|.-..+|.-..-||-.+....... .+ .-.+..++.+. -+..|...+--+ .
T Consensus 398 ~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdp--f~paR~a~v~~l-~ 472 (690)
T KOG1243|consen 398 PKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDP--FVPARKAGVLAL-A 472 (690)
T ss_pred hhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCC--CCCchhhhhHHH-h
Confidence 999877 222233333333334788888888888887776554211 11 11222344443 344555543222 2
Q ss_pred HHccCCCCCchhhhHHH-HHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 000834 250 QLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 250 ~l~~~~~~~~~~~ll~p-l~~~L~D~~~eVR~aA~~~L~~l~~~vG 294 (1263)
...++-...+...-+.| ++...-|.+..||+.|..++..++...-
T Consensus 473 at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 473 ATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 22222222233333334 5556689999999999999887764433
No 129
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=77.23 E-value=7 Score=42.75 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChh
Q 000834 159 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 238 (1263)
Q Consensus 159 ~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~ 238 (1263)
..+-...+.+++.+...+|....++...++-.+-+--.+..-..|+++..|+-+.+..+|++.++..+-=.+.+......
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc
Confidence 34556678999999999999888877777777776656666789999999999999999999887755333332111223
Q ss_pred HHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcC
Q 000834 239 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTD 273 (1263)
Q Consensus 239 vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D 273 (1263)
.|.=+|-.|.+.+... ....+...+.|+...+..
T Consensus 94 ~raWLLPlLr~~i~~~-~L~fF~~~~lPla~~~~~ 127 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA-SLSFFVEEFLPLARRLRQ 127 (198)
T ss_pred ccchhHHHHHHhccCC-ChHHHHHHHHHHHHHHHH
Confidence 4443444444433221 123456666676655433
No 130
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=77.19 E-value=27 Score=43.19 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=19.6
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHH
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILE 132 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~ 132 (1263)
.+-.-|.+..--.|..|+..|.++.-
T Consensus 307 ~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 307 SLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 34455678888889999888888764
No 131
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=77.07 E-value=62 Score=38.95 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=108.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCCCC----chhHHHHHHhhhcc-------ccHHHHHHHHHHHHHH------HH
Q 000834 112 LESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYD-------SNKNLVMATLITLGAV------AS 174 (1263)
Q Consensus 112 l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~----~~eL~~aLk~rL~D-------sN~~V~~~AL~~l~~L------A~ 174 (1263)
|...+=-.|.+|+-.|...+...+....... ++-+++.++.-+.. .+..++..|+++++.+ +.
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 4556667899999999999975322111111 23334444444433 4889999999999864 45
Q ss_pred hcCchhhhhhhchHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHh---hccCChhHHHHHHH
Q 000834 175 AMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVHL----DKMVPYVTTALT---DAKLGAEGRKDLFD 245 (1263)
Q Consensus 175 alg~~f~~~~~~llp~lL~kl~DkK--~~VR~aa~~aL~a~~~~~~l----~~ll~~l~~~L~---~kk~~p~vR~e~L~ 245 (1263)
.+..+|.. .++-..+..+.+.+ +.+......+|.. +.++. ....+.+...+. +.-++.-+-.|.|.
T Consensus 82 ~l~~d~~~---~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 82 TLSDDFAS---FIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred hCChHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 66655544 45666666664333 3444444444432 12222 223333444332 21123345566666
Q ss_pred HHHHHHccCCC--CCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCh
Q 000834 246 WLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 295 (1263)
Q Consensus 246 ~L~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~ 295 (1263)
.+.+.+...+. ......++++++..+-+...++|..|..++..+..++|.
T Consensus 157 i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~ 208 (372)
T PF12231_consen 157 IYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGP 208 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCh
Confidence 77777766653 223456888999999999999999999999988888884
No 132
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.52 E-value=39 Score=39.95 Aligned_cols=69 Identities=26% Similarity=0.221 Sum_probs=43.4
Q ss_pred hhHHHHHHhhh-ccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 000834 144 GELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 215 (1263)
Q Consensus 144 ~eL~~aLk~rL-~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~ 215 (1263)
..++..|...+ .+.|-......+.++..-...++.++ -..++..+.+.|+|+|+.||..-..++-..+.
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 45566666655 36777776666666666555553222 34556666667778887777777777766654
No 133
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=75.38 E-value=27 Score=44.43 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=74.6
Q ss_pred HhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcC----CcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCcc
Q 000834 505 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS----ATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 580 (1263)
Q Consensus 505 ~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~----~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~ 580 (1263)
.-|+|+|+..++-.-..||-..-.=+......++ .+.+|+.+..|+.+.|+-.|+..+..|..++...+..+. +.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L-n~ 407 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL-NG 407 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh-cH
Confidence 4577888777665555566442221222222222 356899999999999999999999999999888876533 34
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000834 581 KSLQIVASLTAERDGEIRKAALNTLATGY 609 (1263)
Q Consensus 581 k~L~~Iak~i~D~d~~VR~AAl~~l~~ly 609 (1263)
..|+..+++-.|.++.+|+...-|++.+-
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccc
Confidence 55688888888999999999999988653
No 134
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=74.86 E-value=44 Score=34.34 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=66.3
Q ss_pred HHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHH-
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE- 503 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~e- 503 (1263)
....+.+.||..-++-++ .+.+... .....++.+..|+...|+.|...+|.+|..++.... ..|...-
T Consensus 14 Ts~~~~~~Dw~~~l~icD----~i~~~~~----~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg---~~f~~ev~ 82 (140)
T PF00790_consen 14 TSESLPSPDWSLILEICD----LINSSPD----GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCG---PRFHREVA 82 (140)
T ss_dssp T-TTSSS--HHHHHHHHH----HHHTSTT----HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH---HHHHHHHT
T ss_pred hCcCCCCCCHHHHHHHHH----HHHcCCc----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHh
Confidence 445677889976665444 4444322 134566778889999999999999998777665432 2232221
Q ss_pred HHhHHHHHHHHh--CCChHH--HHHHHHHHHHHHHHhcCCcccHHHHH
Q 000834 504 AAVFLPCLVEKS--GHNIEK--VREKMRELTKQIVNFYSATKTLPYIL 547 (1263)
Q Consensus 504 a~~~lP~LveKl--GD~K~~--vR~~~~~il~~l~~v~~~skv~~~ll 547 (1263)
..-|+..|...+ ...... ||+++.+++......|....-+.++.
T Consensus 83 ~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~ 130 (140)
T PF00790_consen 83 SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQ 130 (140)
T ss_dssp SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHH
T ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHH
Confidence 234666665432 222223 88888888887777775444444443
No 135
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.31 E-value=1.1e+02 Score=36.09 Aligned_cols=176 Identities=20% Similarity=0.228 Sum_probs=104.9
Q ss_pred CCCChhHHHHHHHHHHHHHHH---hccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhh-hhhchH
Q 000834 113 ESPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVL 188 (1263)
Q Consensus 113 ~dk~WK~RkEaLe~L~~il~~---a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~-~~~~ll 188 (1263)
.+.+-.+|-.|++.|+.++.. |+..+. +|-+...|. .+.+++..|...|+.+|+..+.-=-+--+. .=...+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 456788899999999999974 333322 355556666 789999999999999999877642211111 111367
Q ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHHHHhcC--chhh-----HHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCc-
Q 000834 189 SDILKCLG-DNKKHMRECTLTVLDAWLAAVH--LDKM-----VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD- 259 (1263)
Q Consensus 189 p~lL~kl~-DkK~~VR~aa~~aL~a~~~~~~--l~~l-----l~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~- 259 (1263)
..++..|. |.--.+|..|.-|+.+.+.+-. .+.+ ...|...|..++...+.+.-++..+...+.......+
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 77777765 5666788999999998887542 2222 2346677776544567666666566655554432111
Q ss_pred hhhhHHH--HHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 260 AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 260 ~~~ll~p--l~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
......+ +.....-=+.+++.++..++-.+...
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 1111111 11222222235666666655555444
No 136
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.28 E-value=69 Score=33.92 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=44.6
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHhhcC-chHHHHHHHHHhHHHHHHH
Q 000834 424 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKD-IIEVLDILLRWFVLQFCK-SNTTCLLKVLEFLPELFDT 491 (1263)
Q Consensus 424 ~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~-~~~~lDlllk~l~lrl~D-tN~qV~~k~Le~L~~l~~~ 491 (1263)
-+.+.|.|++...|-.|+.-+...+..++.+ +..+..-.++.+...+.. ....+...++..+..+|..
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3667788999999999999999988876433 335555444444433332 3455566666666666653
No 137
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.16 E-value=54 Score=33.37 Aligned_cols=102 Identities=21% Similarity=0.151 Sum_probs=64.5
Q ss_pred hhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHH-h
Q 000834 428 RLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA-V 506 (1263)
Q Consensus 428 ~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~-~ 506 (1263)
.+-..||..-++-++.+... +.. .-..++.+..|++..|+.|...+|.+|..++.. .+..|...-+. -
T Consensus 12 ~~~~~D~~~il~icd~I~~~----~~~----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkN---cg~~f~~~i~s~~ 80 (133)
T cd03561 12 SLEEPDWALNLELCDLINLK----PNG----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKN---CGKPFHLQVADKE 80 (133)
T ss_pred ccCCccHHHHHHHHHHHhCC----CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh---CChHHHHHHhhHH
Confidence 34567887766666665433 211 234566777888999999999999977665543 23335444444 5
Q ss_pred HHHHHHHHhCC---ChHHHHHHHHHHHHHHHHhcCCc
Q 000834 507 FLPCLVEKSGH---NIEKVREKMRELTKQIVNFYSAT 540 (1263)
Q Consensus 507 ~lP~LveKlGD---~K~~vR~~~~~il~~l~~v~~~s 540 (1263)
|+..|+..+.. ....||+++.+++......|+..
T Consensus 81 fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 81 FLLELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 66665554432 34577777777777777666543
No 138
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=70.98 E-value=65 Score=37.40 Aligned_cols=126 Identities=14% Similarity=0.156 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCchhhhh--hhchHHHHH-HHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhhccCChhH
Q 000834 165 TLITLGAVASAMGPAVEKS--SKGVLSDIL-KCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEG 239 (1263)
Q Consensus 165 AL~~l~~LA~alg~~f~~~--~~~llp~lL-~kl~DkK~~VR~aa~~aL~a~~~~~--~l~~ll~~l~~~L~~kk~~p~v 239 (1263)
+|.+++.+.+.....+.+. +..++..++ -.+....+.||+.+..||-...-.- -....+..+...+... ...+
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~--~~~v 80 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD--DEEV 80 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC--CHHH
Confidence 5666777666666556653 347777777 4667777899999999998765322 1234455566666433 5889
Q ss_pred HHHHHHHHHHHHccCCCC-----C------chhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 240 RKDLFDWLSKQLTGLSGF-----P------DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 240 R~e~L~~L~~~l~~~~~~-----~------~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
|..+++.+...+-.++.. . ....++..+...|.+.+++||..|.+.+..++-.
T Consensus 81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999999998877631 1 1245666678888888999999999999988744
No 139
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.94 E-value=42 Score=41.08 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=95.3
Q ss_pred HHHHHHHHhcCch-hh--hhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhhccCCh
Q 000834 167 ITLGAVASAMGPA-VE--KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGA 237 (1263)
Q Consensus 167 ~~l~~LA~alg~~-f~--~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~------l~~ll~~l~~~L~~kk~~p 237 (1263)
.-++.+++-+++. +. .....++-.+.++..|..+.+|..|..+|-..+.-++ ...+++.|..+|.+.+ +-
T Consensus 236 td~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~-~~ 314 (533)
T KOG2032|consen 236 TDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL-NE 314 (533)
T ss_pred HHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC-cc
Confidence 3556677777765 44 5677888889999999999999999999887775432 3467788888888764 46
Q ss_pred hHHHHHHHHHHHHHccCCC---CCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCh
Q 000834 238 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 295 (1263)
Q Consensus 238 ~vR~e~L~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~ 295 (1263)
.|.-+++..|...++.... .+.+.++..-+-..+.|-+.++|-+|.-+++.+.+..|-
T Consensus 315 ~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 315 EVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred HHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 6777888888877765432 123344444456677999999999999999999988884
No 140
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=70.49 E-value=34 Score=34.89 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=66.5
Q ss_pred hhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHH-HH
Q 000834 427 RRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE-AA 505 (1263)
Q Consensus 427 ~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~e-a~ 505 (1263)
..+-..||..-++-++.+..- ..+ .-..++.+..|+...|+.|...+|.+|..++... +..|...- ..
T Consensus 11 ~~l~~~dw~~~l~icD~i~~~-~~~-------~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc---g~~f~~ev~s~ 79 (133)
T smart00288 11 PSLLEEDWELILEICDLINST-PDG-------PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC---GSKFHLEVASK 79 (133)
T ss_pred cCCCCcCHHHHHHHHHHHhCC-Ccc-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC---CHHHHHHHHhH
Confidence 345678998777776666443 211 2345677888999999999999999777665432 33343332 23
Q ss_pred hHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHhcCCcccHHHH
Q 000834 506 VFLPCLVEKSGHNI--EKVREKMRELTKQIVNFYSATKTLPYI 546 (1263)
Q Consensus 506 ~~lP~LveKlGD~K--~~vR~~~~~il~~l~~v~~~skv~~~l 546 (1263)
-|+..|+..+.+.. +.|++++..++......|....-++++
T Consensus 80 ~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i 122 (133)
T smart00288 80 EFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQI 122 (133)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence 46666654443322 237777777777766666433333333
No 141
>PF05536 Neurochondrin: Neurochondrin
Probab=70.08 E-value=1.1e+02 Score=38.72 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=100.6
Q ss_pred chhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhh-hchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-
Q 000834 143 TGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL- 219 (1263)
Q Consensus 143 ~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~-~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l- 219 (1263)
+-+.+..|-+.+. .+...++..+++||..|+ +...+.+..+ ...++.+.+.+.. ++...+.+...+..++...+.
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchh
Confidence 4555666666664 333588899999999999 4444443333 3567777776666 777788888888877765541
Q ss_pred ---------hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC----CCchhhhHHHHHh----hh-cCCCHHHHHH
Q 000834 220 ---------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG----FPDAAHLLKPASI----AM-TDKSSDVRKA 281 (1263)
Q Consensus 220 ---------~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~----~~~~~~ll~pl~~----~L-~D~~~eVR~a 281 (1263)
..++..+...+... .-..|-+++.+|...|...+. ......+...+.. .| +--.+.-|..
T Consensus 174 ~~~~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 174 SWAEDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 23445555555432 245778889999999987731 1222334444433 34 5566789999
Q ss_pred HHHHHHHHHHhcChhhh
Q 000834 282 AEACIVEILRAGGQETI 298 (1263)
Q Consensus 282 A~~~L~~l~~~vG~~~i 298 (1263)
|..+...++.+.|.+-+
T Consensus 252 al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 252 ALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHHHHHHhChHhh
Confidence 99999999999997643
No 142
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=68.62 E-value=42 Score=38.20 Aligned_cols=169 Identities=12% Similarity=0.140 Sum_probs=98.0
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchh-HHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhh
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS 184 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~e-L~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~ 184 (1263)
-+...+.+++=+.|..|+..+..+.... .-+.. +.. +...+...+. ..|..++..++.+|..+. +-.+....+
T Consensus 58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~--en~~~-Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l 132 (254)
T PF04826_consen 58 LIGSLLNDPNPSVREKALNALNNLSVND--ENQEQ-IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHML 132 (254)
T ss_pred HHHHHcCCCChHHHHHHHHHHHhcCCCh--hhHHH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhH
Confidence 3566778888899999998887654211 00000 122 3334444444 468899999999999885 334445556
Q ss_pred hchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-h-----hhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC-
Q 000834 185 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-D-----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF- 257 (1263)
Q Consensus 185 ~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l-~-----~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~- 257 (1263)
...+|.++.-+......++..+..+|-.+.+.-.. . .++..+..-+. .+....+-..++.|....-...++.
T Consensus 133 ~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~-~~~~~~~l~~~l~~~~ni~~~~~~~~ 211 (254)
T PF04826_consen 133 ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFN-SSESKENLLRVLTFFENINENIKKEA 211 (254)
T ss_pred HhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHc-cCCccHHHHHHHHHHHHHHHhhCccc
Confidence 66788888888777778888888888776543211 1 22233333333 2223445556666655443433321
Q ss_pred -----C------------chhhhHHHHHhhhcCCCHHHHHH
Q 000834 258 -----P------------DAAHLLKPASIAMTDKSSDVRKA 281 (1263)
Q Consensus 258 -----~------------~~~~ll~pl~~~L~D~~~eVR~a 281 (1263)
. +...+.+-+.....+.++|||..
T Consensus 212 ~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 212 YVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred ceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 0 11223333444558888888864
No 143
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.32 E-value=80 Score=40.32 Aligned_cols=169 Identities=12% Similarity=0.103 Sum_probs=87.5
Q ss_pred hhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhch---------HHHHHHHh-CCCcHHHHHHHHHHHHHH
Q 000834 144 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV---------LSDILKCL-GDNKKHMRECTLTVLDAW 213 (1263)
Q Consensus 144 ~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~l---------lp~lL~kl-~DkK~~VR~aa~~aL~a~ 213 (1263)
..|+.+|.++.-++-+-.+..|+..|..++...|.+...|.-.. +-.+|..+ ....+.+|....++|+.+
T Consensus 208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~i 287 (938)
T KOG1077|consen 208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERI 287 (938)
T ss_pred HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 34556666666666666666666777777777666643333322 23344444 355567788888888777
Q ss_pred HHhcC-------c-------hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccC------------------CC-CCch
Q 000834 214 LAAVH-------L-------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL------------------SG-FPDA 260 (1263)
Q Consensus 214 ~~~~~-------l-------~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~------------------~~-~~~~ 260 (1263)
..... + ..+++.|.=++ |--..+..-..+.+-|...+..- .. ....
T Consensus 288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~-h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~dav 366 (938)
T KOG1077|consen 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAI-HLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAV 366 (938)
T ss_pred HhccccCccccchHhhhhHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHH
Confidence 65332 0 01222211111 10112333333333333333211 00 1122
Q ss_pred hhhHHHHHhhhc-CCCHHHHHHHHHHHHHHHHhcChh----hhhhhhhcCChhHHHHH
Q 000834 261 AHLLKPASIAMT-DKSSDVRKAAEACIVEILRAGGQE----TIEKNLKDIQGPALALI 313 (1263)
Q Consensus 261 ~~ll~pl~~~L~-D~~~eVR~aA~~~L~~l~~~vG~~----~i~~~l~~L~~~~~~~i 313 (1263)
+.....++..|. +++..||..|.++|-.+|..-..+ .+..++...+...+..+
T Consensus 367 K~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 367 KKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEI 424 (938)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHH
Confidence 333445777776 899999999998888887654432 34556666665444433
No 144
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.19 E-value=75 Score=41.47 Aligned_cols=179 Identities=19% Similarity=0.204 Sum_probs=102.0
Q ss_pred cCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHH
Q 000834 430 LSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLP 509 (1263)
Q Consensus 430 fs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP 509 (1263)
.+..--.|-.|+.+|..+++.-..........+|+.+.--++|.++-|...++.-+..++++ | =..++|
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-----y------~e~il~ 805 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-----Y------PEDILP 805 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-----c------chhhHH
Confidence 34445678889999999988554333333344444444445788888877777754444443 1 145667
Q ss_pred HHHHHhCCChH----HHHHHHHHHHHHHHHhcCC--c----ccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccC-
Q 000834 510 CLVEKSGHNIE----KVREKMRELTKQIVNFYSA--T----KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG- 578 (1263)
Q Consensus 510 ~LveKlGD~K~----~vR~~~~~il~~l~~v~~~--s----kv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~- 578 (1263)
-|.|---..|. ..|=++++++..+...-|+ . .++...|.|....--+-|+.++.-++.+.....+.+..
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 77662111111 1122344444333333322 1 23444445666455566999999999887655444332
Q ss_pred ccchHHHH-HHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHHH
Q 000834 579 QLKSLQIV-ASLTAERDGEIRKAALNTLATGYKILGEDIWRY 619 (1263)
Q Consensus 579 ~~k~L~~I-ak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~ 619 (1263)
-...+..| .-.-.|...-||.||+.++..+-.-.|.++-.+
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpi 927 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPI 927 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHH
Confidence 01112222 212258899999999999999988888775443
No 145
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.15 E-value=61 Score=33.57 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=64.5
Q ss_pred hhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchH-HHH
Q 000834 427 RRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES-EAA 505 (1263)
Q Consensus 427 ~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~-ea~ 505 (1263)
..+-..||..-++-++.+... ... .--.+|.+..|+...|+.|...+|.+|..++..+ +..|... -..
T Consensus 15 ~~l~~~dw~~ileicD~In~~----~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC---G~~fh~evas~ 83 (142)
T cd03569 15 ELLGEPDLASILEICDMIRSK----DVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC---GTHFHDEVASR 83 (142)
T ss_pred cccCccCHHHHHHHHHHHhCC----CCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC---CHHHHHHHhhH
Confidence 345678998877777766532 111 2335677788999999999999999777665533 2333322 224
Q ss_pred hHHHHHHHHhC-CChHHHHHHHHHHHHHHHHhcCCc
Q 000834 506 VFLPCLVEKSG-HNIEKVREKMRELTKQIVNFYSAT 540 (1263)
Q Consensus 506 ~~lP~LveKlG-D~K~~vR~~~~~il~~l~~v~~~s 540 (1263)
-|+..|+.-+- .....|++++-.++..-...|...
T Consensus 84 ~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 84 EFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45655554432 344577777777777666666543
No 146
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.88 E-value=43 Score=44.92 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=53.0
Q ss_pred cHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 000834 542 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKIL 612 (1263)
Q Consensus 542 v~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~ 612 (1263)
+++.+.+.+..-|+-+|...|+...++.+++-...-.-...+..+...+.|++.-||..|++.+.-+-...
T Consensus 360 ~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~ 430 (1251)
T KOG0414|consen 360 LLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRH 430 (1251)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcC
Confidence 45667777778899999999999988888776432112234566677788999999999999988764443
No 147
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=64.61 E-value=1.3e+02 Score=37.54 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=103.2
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccc-cHHHHHHHHH---HHHHHHHhcCc----h
Q 000834 108 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLI---TLGAVASAMGP----A 179 (1263)
Q Consensus 108 ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~Ds-N~~V~~~AL~---~l~~LA~alg~----~ 179 (1263)
+.+.+.+.+=+.|+|||+.|+. .+ +++.|+.-+...+++. -.||++.-|. .+..++.++=+ .
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T---------Ds-GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET---------DS-GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc---------Cc-cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3455667888999999987653 12 3777777777666532 2333333333 33444555432 2
Q ss_pred hhhhhhchHHHHHHHhCCCcH----------HHHHHHHHHHHHHHHhcC-----c-hhhHHHHHHHHhhccCChhHHHHH
Q 000834 180 VEKSSKGVLSDILKCLGDNKK----------HMRECTLTVLDAWLAAVH-----L-DKMVPYVTTALTDAKLGAEGRKDL 243 (1263)
Q Consensus 180 f~~~~~~llp~lL~kl~DkK~----------~VR~aa~~aL~a~~~~~~-----l-~~ll~~l~~~L~~kk~~p~vR~e~ 243 (1263)
+++|+..++|.++.|+-.++- .+|+-|...+..++...+ + ..+...+..++.+.+..+-...++
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 789999999999998755443 378888888888887653 1 234444555555443345566666
Q ss_pred HHHHHHHHccC-CC--CCchhhhHHHHHhhhcCCC---HHHHHHHHHHHHHHHHhcCh
Q 000834 244 FDWLSKQLTGL-SG--FPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAGGQ 295 (1263)
Q Consensus 244 L~~L~~~l~~~-~~--~~~~~~ll~pl~~~L~D~~---~eVR~aA~~~L~~l~~~vG~ 295 (1263)
+.-|...-... .. .+.+..+..-+-+.+.+.+ .-.+..|..+...|.++.+.
T Consensus 362 i~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 362 IAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 65554433211 11 1222222222333343333 33477777888888777664
No 148
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=64.44 E-value=87 Score=37.30 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=58.5
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccc-------cHHHHHHHHHHHHHHHHhcCchhhhh
Q 000834 111 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-------NKNLVMATLITLGAVASAMGPAVEKS 183 (1263)
Q Consensus 111 ~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~Ds-------N~~V~~~AL~~l~~LA~alg~~f~~~ 183 (1263)
.+.+.+=..|.+||+.|+. ++ +++.|+.-|...+.+. |..+....+.++.+|..-=.-..++|
T Consensus 186 a~~~~~~~~r~~aL~sL~t-----D~-----gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 186 ALVGSNEEKRREALQSLRT-----DP-----GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHhCCCHHHHHHHHHHhcc-----CC-----CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 3445566677777776433 12 2555655555555322 33333333444444444333457899
Q ss_pred hhchHHHHHHHhCCC----------cHHHHHHHHHHHHHHHHhcC
Q 000834 184 SKGVLSDILKCLGDN----------KKHMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 184 ~~~llp~lL~kl~Dk----------K~~VR~aa~~aL~a~~~~~~ 218 (1263)
+..++|.+|.++-.+ --.+|+-|...|..++..++
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~ 300 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFS 300 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcC
Confidence 999999999987222 23678888888887777653
No 149
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.03 E-value=33 Score=37.64 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=75.3
Q ss_pred cccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHh--
Q 000834 98 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA-- 175 (1263)
Q Consensus 98 vDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~a-- 175 (1263)
.|+..-|| -|++.|.+.+.--|.=|-+.+..++.....+|.|- +-.|+..||..+.-.|..|...+|++|+.|...
T Consensus 110 Ldy~~yLp-~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpV-LPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~ 187 (262)
T KOG3961|consen 110 LDYCPYLP-LFFDGLAETDHPYRFVARQGITDLLLAGGEKILPV-LPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG 187 (262)
T ss_pred ccchHHHH-HHhhhhhhcCCCcchhhhhcHHHHHHhcccccccc-cHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc
Confidence 34444443 68899999999999999998988887555677775 788999999999999999999999999987663
Q ss_pred -cCchhhhhhhchHHHH
Q 000834 176 -MGPAVEKSSKGVLSDI 191 (1263)
Q Consensus 176 -lg~~f~~~~~~llp~l 191 (1263)
.|+..-+|-+.++|.+
T Consensus 188 ~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 188 CVGAALVPFYRQLLPVL 204 (262)
T ss_pred ccchhhhhHHHHhhhhh
Confidence 5788889999988854
No 150
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.73 E-value=1.1e+02 Score=40.02 Aligned_cols=181 Identities=17% Similarity=0.166 Sum_probs=114.5
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHH--hccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhh
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 184 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~--a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~ 184 (1263)
+++..+.|+---.|..||.++..+++. +..++. ...++.+....+.|-+.-|-..|++.+..|+.- |=
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~---~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~ 800 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ---GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP 800 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh---HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc
Confidence 456667788889999999999999973 112221 245778888889999999998888866666544 66
Q ss_pred hchHHHHHHH-hCCCcHH---HHHHHHHHHHHHHHhcC-----c-hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Q 000834 185 KGVLSDILKC-LGDNKKH---MRECTLTVLDAWLAAVH-----L-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 254 (1263)
Q Consensus 185 ~~llp~lL~k-l~DkK~~---VR~aa~~aL~a~~~~~~-----l-~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~ 254 (1263)
..++|-+.+- ...+|.. .|=.+-+++..++...| . +.++..+..+..+ +.-.-|...+.-+..+....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvre--pd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVRE--PDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC--chHHHHHhHHHHHHHHHHHH
Confidence 7788888883 3333333 23334455555555443 1 2222222222222 12345888887777665533
Q ss_pred CC-CCc-hhhhHHHHHhh-hcCCCHHHHHHHHHHHHHHHHhcChhhhhh
Q 000834 255 SG-FPD-AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK 300 (1263)
Q Consensus 255 ~~-~~~-~~~ll~pl~~~-L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~ 300 (1263)
.. ..+ +.+.+.-+... -.|...-||.+|..++..+..-.|++ +.+
T Consensus 879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-lLp 926 (982)
T KOG4653|consen 879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED-LLP 926 (982)
T ss_pred hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh-hHH
Confidence 21 222 23333333333 27999999999999999999999965 444
No 151
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=63.42 E-value=87 Score=32.38 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=70.1
Q ss_pred HhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhc-CchHHHHHHHHHhHHHHHHHHhhcCCCcchHHH
Q 000834 426 HRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFC-KSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 504 (1263)
Q Consensus 426 ~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~-DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea 504 (1263)
...+-..||..-++-.+.+..- ..+ .--.+|.+..|+. .+|.+|...+|.+|..++... ++.|...-+
T Consensus 11 se~l~~~dw~~ileicD~In~~--~~~------~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNC---G~~fh~eia 79 (141)
T cd03565 11 DGSLQSEDWGLNMEICDIINET--EDG------PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNC---GHRFHVLVA 79 (141)
T ss_pred CcCCCCcCHHHHHHHHHHHhCC--CCc------HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc---cHHHHHHHH
Confidence 3456677998888877777532 111 2235677778887 479999999999776655433 334443332
Q ss_pred -HhHHHH-HHHHhC---CChHHHHHHHHHHHHHHHHhcCCcccHHHH
Q 000834 505 -AVFLPC-LVEKSG---HNIEKVREKMRELTKQIVNFYSATKTLPYI 546 (1263)
Q Consensus 505 -~~~lP~-LveKlG---D~K~~vR~~~~~il~~l~~v~~~skv~~~l 546 (1263)
..|+.. |+..+. +....|++++..+++.....|+...-++++
T Consensus 80 sk~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i 126 (141)
T cd03565 80 KKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGV 126 (141)
T ss_pred HHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHH
Confidence 467776 665553 234578888888888887777554344443
No 152
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=63.39 E-value=31 Score=41.93 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=66.4
Q ss_pred HHhhcCchHHHHHHHHHhHHHHHHH----Hh----hcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcC
Q 000834 467 VLQFCKSNTTCLLKVLEFLPELFDT----LR----DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS 538 (1263)
Q Consensus 467 ~lrl~DtN~qV~~k~Le~L~~l~~~----L~----~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~ 538 (1263)
+++++|+|+..-.-+|+++..++.- |. .....|+.+.+.+ ...||+..|-++..+..-|
T Consensus 53 ~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~------------a~si~~~~r~l~~~l~~e~- 119 (728)
T KOG4535|consen 53 TLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMI------------ACSIRELHRCLLLALVAES- 119 (728)
T ss_pred EEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHH------------HHHHHHHHHHHHHHHHHhc-
Confidence 4588999999988888877666531 11 0112222221110 1234444444443333323
Q ss_pred CcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccC---ccchHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000834 539 ATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG---QLKSLQIVASLTAERDGEIRKAALNTLATG 608 (1263)
Q Consensus 539 ~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~---~~k~L~~Iak~i~D~d~~VR~AAl~~l~~l 608 (1263)
.+.+-..|+.-++.++....+.-.. -.+....|++.|.++|+.||-.++.+++.+
T Consensus 120 ---------------~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~ 177 (728)
T KOG4535|consen 120 ---------------SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAI 177 (728)
T ss_pred ---------------CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 3444566666677777655544221 113336789999999999999999999876
No 153
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.77 E-value=31 Score=36.49 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=76.5
Q ss_pred CCCHHHHHhcCCCChhHHHHHHHHHHHHHHHh-ccCCCCCCchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCch-
Q 000834 103 KFTPTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPA- 179 (1263)
Q Consensus 103 kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a-~~~i~p~~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~- 179 (1263)
++...+..-+.++++..|-.|+--+...+.+. ...+.. .++..++.|-+.+. +....+...++.++..|...++..
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~-~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLS-HGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445667788999999999999988888753 122323 36777777777774 556677788888888888766532
Q ss_pred ------hhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000834 180 ------VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 216 (1263)
Q Consensus 180 ------f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~ 216 (1263)
.-+++..+++.++..+.+ ..+.+.+..+|..++..
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 346666777777776665 55666666666666654
No 154
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=62.68 E-value=9 Score=31.08 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.2
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHH
Q 000834 581 KSLQIVASLTAERDGEIRKAALNTL 605 (1263)
Q Consensus 581 k~L~~Iak~i~D~d~~VR~AAl~~l 605 (1263)
..++.|.+.+.|.++.||+||+.++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4457888899999999999999864
No 155
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.21 E-value=46 Score=42.66 Aligned_cols=125 Identities=14% Similarity=0.235 Sum_probs=78.5
Q ss_pred CCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHH-------HHHHHHHHHHHHHHh
Q 000834 103 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN-------LVMATLITLGAVASA 175 (1263)
Q Consensus 103 kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~-------V~~~AL~~l~~LA~a 175 (1263)
.+.=+++.-|.+.+...|..+++-.-.+++.. ++.+++..||+++.+.|-. -.+.=++.+...|
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca-- 387 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA-- 387 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh--
Confidence 33446777888899999999999888887632 4789999999988644433 2222233333222
Q ss_pred cCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCC
Q 000834 176 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 255 (1263)
Q Consensus 176 lg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~ 255 (1263)
-.|-.++..++|-+++-++|.++..-. .++.++-++++. .|.+|...+.-|.+.|..++
T Consensus 388 --v~Fp~~aatvV~~ll~fisD~N~~aas----------------~vl~FvrE~iek---~p~Lr~~ii~~l~~~~~~ir 446 (948)
T KOG1058|consen 388 --VKFPEVAATVVSLLLDFISDSNEAAAS----------------DVLMFVREAIEK---FPNLRASIIEKLLETFPQIR 446 (948)
T ss_pred --hcChHHHHHHHHHHHHHhccCCHHHHH----------------HHHHHHHHHHHh---CchHHHHHHHHHHHhhhhhc
Confidence 346677778888888888888764221 222333333332 37777777776666666655
Q ss_pred CC
Q 000834 256 GF 257 (1263)
Q Consensus 256 ~~ 257 (1263)
..
T Consensus 447 S~ 448 (948)
T KOG1058|consen 447 SS 448 (948)
T ss_pred cc
Confidence 43
No 156
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=60.99 E-value=12 Score=30.28 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.3
Q ss_pred hhhHHHHHhhhcCCCHHHHHHHHHHH
Q 000834 261 AHLLKPASIAMTDKSSDVRKAAEACI 286 (1263)
Q Consensus 261 ~~ll~pl~~~L~D~~~eVR~aA~~~L 286 (1263)
..+...+..+|.|.++.||++|.+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45556688899999999999998764
No 157
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.96 E-value=1.1e+02 Score=39.33 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=75.5
Q ss_pred hhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhh
Q 000834 144 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKM 222 (1263)
Q Consensus 144 ~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~-DkK~~VR~aa~~aL~a~~~~~~l~~l 222 (1263)
..-+..|.+.+.+.-.|+.-.||+.+..|+.. ......++.-...++..|+ |+..+||..+...|.+|....+...+
T Consensus 328 ~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss--~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~I 405 (938)
T KOG1077|consen 328 SRAVNQLGQFLSHRETNIRYLALESMCKLASS--EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQI 405 (938)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHhc--cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHH
Confidence 44456667777777777777777777777765 2222334444677888899 99999999999999999999999999
Q ss_pred HHHHHHHHhhccCChhHHHHHH
Q 000834 223 VPYVTTALTDAKLGAEGRKDLF 244 (1263)
Q Consensus 223 l~~l~~~L~~kk~~p~vR~e~L 244 (1263)
++.+...+.+. .+..|+++.
T Consensus 406 V~elLqYL~tA--d~sireeiv 425 (938)
T KOG1077|consen 406 VAELLQYLETA--DYSIREEIV 425 (938)
T ss_pred HHHHHHHHhhc--chHHHHHHH
Confidence 99999999986 588998874
No 158
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.85 E-value=20 Score=36.00 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=39.5
Q ss_pred ccCChHhHHHHHHHHHHHHHhhccc--ccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000834 551 RSKNNRTRIECVDLVGFLIDHHGAE--ISGQLKSLQIVASLTAERDGEIRKAALNTLATGY 609 (1263)
Q Consensus 551 ksKN~rvR~ecL~~L~~lI~~~G~~--v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly 609 (1263)
++.++.+.+-++.-|+.++..|.-. ++....+=..|-.++++.|++||..|+.|+..+.
T Consensus 54 ~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 54 KSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3446666777777788888777532 1111122257788999999999999999987664
No 159
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=60.64 E-value=2.9e+02 Score=40.02 Aligned_cols=202 Identities=10% Similarity=0.084 Sum_probs=121.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCCCC---c---hhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 113 ESPDWKVRLESIEAVNKILEEANKRIQPAG---T---GELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 113 ~dk~WK~RkEaLe~L~~il~~a~~~i~p~~---~---~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
.+.+=..+..|++.|.++..+ .+.-.+ + .++++.|...+. ..+..|....++|+..|..+-+..+..--+
T Consensus 1147 ~~~n~~va~fAidsLrQLs~k---fle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWk 1223 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMK---FLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWK 1223 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcH
Confidence 455667899999998887753 332211 2 467777776664 556678888999999998888777777667
Q ss_pred chHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-cC------ch---hhHHHHHHHHhhccCChhHHHHHHHH---HHHHHc
Q 000834 186 GVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VH------LD---KMVPYVTTALTDAKLGAEGRKDLFDW---LSKQLT 252 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~-~~------l~---~ll~~l~~~L~~kk~~p~vR~e~L~~---L~~~l~ 252 (1263)
.++..+-..++|..+.+...+-+++..++.. .+ .+ .++..+..+-.++. ...+=-.++.+ +...+.
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~-~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRF-NKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcC-cccccHHHHHHHHHHHHHHH
Confidence 7777777778899999999999999988753 22 12 23333333332221 22221222222 223331
Q ss_pred cCC-------------------------C------CCc----hhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhh
Q 000834 253 GLS-------------------------G------FPD----AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET 297 (1263)
Q Consensus 253 ~~~-------------------------~------~~~----~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~ 297 (1263)
... . ..+ ..+++..+..+..|...+||+.|.+.|-.++...|...
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 110 0 001 11222223344579999999999999999998888643
Q ss_pred hhhhhhcCChhHHHHHHHHhh
Q 000834 298 IEKNLKDIQGPALALILERIK 318 (1263)
Q Consensus 298 i~~~l~~L~~~~~~~ilek~~ 318 (1263)
=..+...+=..-+-+|++.++
T Consensus 1383 s~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1383 SLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 333444443334455666554
No 160
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=60.49 E-value=64 Score=31.74 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=53.0
Q ss_pred hcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHH-HhH
Q 000834 429 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA-AVF 507 (1263)
Q Consensus 429 Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea-~~~ 507 (1263)
+...+|+ .+.+|.+.+..... ....+.+.+..|+.+.|..+..++|.+|..++.... ..|..+-+ ..|
T Consensus 13 ~~~p~~~----~i~~i~d~~~~~~~----~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g---~~f~~~i~~~~~ 81 (115)
T cd00197 13 NMGPDWP----LIMEICDLINETNV----GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG---ERFHQEVASNDF 81 (115)
T ss_pred CCCCCHH----HHHHHHHHHHCCCc----cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc---HHHHHHHHHhHH
Confidence 3344554 45555555543321 255678888889999999999999998777665432 23433322 223
Q ss_pred HHHHHH-----HhC-CChHHHHHHHHHHHHH
Q 000834 508 LPCLVE-----KSG-HNIEKVREKMRELTKQ 532 (1263)
Q Consensus 508 lP~Lve-----KlG-D~K~~vR~~~~~il~~ 532 (1263)
+-.++. ..| +.-..||+++..++..
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 82 AVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 333321 123 2235667776666543
No 161
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.15 E-value=39 Score=38.76 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=58.1
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhc---cCChh-HHHHHHHHHHHHHccCCC--CCchhhhHHHHH
Q 000834 195 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA---KLGAE-GRKDLFDWLSKQLTGLSG--FPDAAHLLKPAS 268 (1263)
Q Consensus 195 l~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~k---k~~p~-vR~e~L~~L~~~l~~~~~--~~~~~~ll~pl~ 268 (1263)
+.+....+|+||.++|. .-.|+..++++++.++... |.+.. .-+.++......+.+-.- .+-+-.+++.+.
T Consensus 207 ~dEs~~~~r~aAl~sLr---~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSil 283 (450)
T COG5095 207 LDESDEQTRDAALESLR---NDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSIL 283 (450)
T ss_pred HHHHHHHHHHHHHHHhc---cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHH
Confidence 45777889999888876 4567888999988887533 22222 222222222223322111 122344444466
Q ss_pred hhh-----cCCCHH-----HHHHHHHHHHHHHHhcCh
Q 000834 269 IAM-----TDKSSD-----VRKAAEACIVEILRAGGQ 295 (1263)
Q Consensus 269 ~~L-----~D~~~e-----VR~aA~~~L~~l~~~vG~ 295 (1263)
.|| +....+ +|+-|..++..++..+|.
T Consensus 284 Tcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 284 TCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 665 222334 999999999999988774
No 162
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.69 E-value=1.9e+02 Score=40.41 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=65.6
Q ss_pred cHHHHHHhh---ccCChHhHHHHHHHHHHHHHhhcccccC-ccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHH
Q 000834 542 TLPYILEGL---RSKNNRTRIECVDLVGFLIDHHGAEISG-QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 617 (1263)
Q Consensus 542 v~~~ll~gl---ksKN~rvR~ecL~~L~~lI~~~G~~v~~-~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~ 617 (1263)
..+++.++| .+-+++.|--.+..+..++.+-|-.+.. -+..+|+++.+++|-|-+|-..+..++-.+-...|+.+|
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~ 1618 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQ 1618 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhh
Confidence 777777776 3667788989999999999988865543 345669999999999999999999999999999999988
Q ss_pred HHh
Q 000834 618 RYV 620 (1263)
Q Consensus 618 ~~l 620 (1263)
.|+
T Consensus 1619 ~y~ 1621 (1621)
T KOG1837|consen 1619 SYL 1621 (1621)
T ss_pred hcC
Confidence 774
No 163
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=58.58 E-value=29 Score=42.41 Aligned_cols=67 Identities=21% Similarity=0.170 Sum_probs=47.9
Q ss_pred HHHHHHhh-ccCChHhHHHHHHHHHHHHHhhcc--cccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000834 543 LPYILEGL-RSKNNRTRIECVDLVGFLIDHHGA--EISGQLKSLQIVASLTAERDGEIRKAALNTLATGY 609 (1263)
Q Consensus 543 ~~~ll~gl-ksKN~rvR~ecL~~L~~lI~~~G~--~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly 609 (1263)
+..+.+-+ ++.++.+-+-++.-|+.++..|+. .++....+=..|-.++++.|++||..|+.|+..+.
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33444444 467788888888889999998842 23322222256789999999999999999998763
No 164
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.27 E-value=46 Score=42.82 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=95.0
Q ss_pred HHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHhhccCChHh
Q 000834 479 LKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT-KTLPYILEGLRSKNNRT 557 (1263)
Q Consensus 479 ~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~s-kv~~~ll~glksKN~rv 557 (1263)
.+|..+|..++- |..++..|.+.||.-+.=.+.......+..+|..+.-.++.+..+.-.- -+...++.-+..|+...
T Consensus 38 r~c~~~lsklly-ll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedviivtsslmkD~t~~~d~y 116 (865)
T KOG1078|consen 38 RKCRHILSKLLY-LLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVIIVTSSLMKDMTGKEDLY 116 (865)
T ss_pred HHHHHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhhhhHHHHhhccCCCcch
Confidence 356677777765 4556778999999777766766677777788999988888876543221 23445665677899999
Q ss_pred HHHHHHHHHHHHHhhcccccCccchH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHHHh
Q 000834 558 RIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYV 620 (1263)
Q Consensus 558 R~ecL~~L~~lI~~~G~~v~~~~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l 620 (1263)
|.-.+.-|.+++..-- ..+. ..+.+.+-|+++.|+++|+-.=--++..-++-+.++.
T Consensus 117 r~~AiR~L~~I~d~~m------~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~ 174 (865)
T KOG1078|consen 117 RAAAIRALCSIIDGTM------LQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA 174 (865)
T ss_pred hHHHHHHHHhhcCcch------hHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHH
Confidence 9999999888775321 2344 6678889999999999997554444444455566655
No 165
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.57 E-value=1.7e+02 Score=40.60 Aligned_cols=152 Identities=17% Similarity=0.188 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 000834 455 IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 534 (1263)
Q Consensus 455 ~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~ 534 (1263)
..+.+|++|--+...-.+++..--.-+-+. +..+.. .+.+.-+.-+..+|..+-. ..-.++...++++..+.
T Consensus 179 ~~e~L~~ll~~lv~~~~~~~~~a~~la~~l----i~~~a~---~~~~~i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~ 250 (1266)
T KOG1525|consen 179 QSELLDVLLENLVKPGRDTIKEADKLASDL----IERCAD---NLEDTIANFLNSCLTEYKS-RQSSLKIKYHELILELW 250 (1266)
T ss_pred hHHHHHHHHHHhccCCCCccHHHHHHHHHH----HHHhhh---hhchhHHHHHHHHHhhccc-cccchhhHHHHHHHHHH
Confidence 345688877666544455554433333332 222222 2334445556666655432 22345566677776666
Q ss_pred HhcCC--cccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccC-ccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 000834 535 NFYSA--TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG-QLKSLQIVASLTAERDGEIRKAALNTLATGYKI 611 (1263)
Q Consensus 535 ~v~~~--skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~-~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~ 611 (1263)
.+.|. .-++|++..-|.+-+--+|.+.+..++.++...+..... ....+..-..-+.|...+||-+++.+.-.++.-
T Consensus 251 ~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 251 RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 54432 126667777788899999999999999999887743322 122234444556789999999999998888766
Q ss_pred HCH
Q 000834 612 LGE 614 (1263)
Q Consensus 612 ~G~ 614 (1263)
..+
T Consensus 331 ~~~ 333 (1266)
T KOG1525|consen 331 NPS 333 (1266)
T ss_pred Cch
Confidence 443
No 166
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=57.07 E-value=77 Score=40.63 Aligned_cols=169 Identities=13% Similarity=0.139 Sum_probs=98.1
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCC-CchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCch-hhhhhhchHHHHH
Q 000834 115 PDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDIL 192 (1263)
Q Consensus 115 k~WK~RkEaLe~L~~il~~a~~~i~p~-~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~-f~~~~~~llp~lL 192 (1263)
++=+++-+-++.|-+++.. +... -...+...|...+ .|-.++-..+-++-.|+.+.... |...+...+-+++
T Consensus 285 kdn~qKs~Flk~Ls~~ip~----fp~rv~~~kiLP~L~~el--~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPT----FPARVLFQKILPTLVAEL--VNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIY 358 (700)
T ss_pred cCcHHHHHHHHHHHHhhcc----CCHHHHHHhhhhHHHHHh--ccccccccccchhhhhhhccchhhhhhhhhHHHHHHh
Confidence 4445555555555555532 2111 0133444444444 44555555666777777766533 4444444444444
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHH----HHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHH
Q 000834 193 KCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY----VTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPAS 268 (1263)
Q Consensus 193 ~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~----l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~ 268 (1263)
.. .|.| .++-...+=+|.+.+.+.-+.+.+. |..++++. ..+++..+|..+....+.++ ....+..+.|-+
T Consensus 359 ~~-~~~~-~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~--~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l 433 (700)
T KOG2137|consen 359 SA-SDPK-QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS--DVQIQELALQILPTVAESID-VPFVKQAILPRL 433 (700)
T ss_pred cc-CCcc-cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc--chhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHh
Confidence 43 3444 3566777778888888775554444 44444442 46777888877766665554 233455555532
Q ss_pred h--hhcCCCHHHHHHHHHHHHHHHHhcC
Q 000834 269 I--AMTDKSSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 269 ~--~L~D~~~eVR~aA~~~L~~l~~~vG 294 (1263)
. |+...+..|+..+..|++.+++.+.
T Consensus 434 ~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 434 KNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred hcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 2 6789999999999999998885544
No 167
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=56.81 E-value=1e+02 Score=35.18 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHHHHHHHHhcCchhh-hhhh--chHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHHHHHHH
Q 000834 157 SNKNLVMATLITLGAVASAMGPAVE-KSSK--GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVPYVTTA 229 (1263)
Q Consensus 157 sN~~V~~~AL~~l~~LA~alg~~f~-~~~~--~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~----l~~ll~~l~~~ 229 (1263)
.+.-+...++.+++..+. ..|. ..++ ..++.+...+.+..+.||+.|..||+.+..... ....++.+...
T Consensus 25 ~dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 345566666666665432 2222 2222 567888889999999999999999997754331 23334444444
Q ss_pred HhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 230 LTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 230 L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
......+..++...|+.|...--.......+...+..++.+|...+..+|..+-++|.-+-
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4332234677777777765442111111223445555788888889999988777776553
No 168
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=56.80 E-value=1.3e+02 Score=38.18 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=79.7
Q ss_pred hhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---ch
Q 000834 144 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LD 220 (1263)
Q Consensus 144 ~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~---l~ 220 (1263)
.+-+.++-....|-+..|...|+.-|-.+++.- ..|+.-+.-.|.+.|..-.+..++++..+|..++..-+ +.
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~ 133 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT 133 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 566788888888999999999999888887763 34666677777777887788899999999999987643 33
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC-----CchhhhHHH-HHhhhcC
Q 000834 221 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-----PDAAHLLKP-ASIAMTD 273 (1263)
Q Consensus 221 ~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~-----~~~~~ll~p-l~~~L~D 273 (1263)
.++..|... +.....+|..++.||...+..++.. .+...++.- +-+.|+|
T Consensus 134 ~lf~~i~~~---~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 134 GLFSQIESS---KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHH------HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhc---ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 333333321 1123679999999999999877531 234444444 5556777
No 169
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=56.54 E-value=1.1e+02 Score=36.33 Aligned_cols=200 Identities=15% Similarity=0.186 Sum_probs=102.1
Q ss_pred cccCCCchhHHHHHHHHHHhh-hhHHHHhhhcCccHHHHHHHHHHHHHhccccchh----hH----HHHHHHHHHHHHhh
Q 000834 400 FKFEDPRIEQIQELENDMMKY-FREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD----II----EVLDILLRWFVLQF 470 (1263)
Q Consensus 400 w~f~~p~~e~ve~L~~q~~~~-~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~----~~----~~lDlllk~l~lrl 470 (1263)
+...+|.+|.+.+|..++... +-..++..|-.-+|..|..........+...... .+ .+..-++.++..++
T Consensus 55 ~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy 134 (335)
T PF08569_consen 55 DGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY 134 (335)
T ss_dssp -SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh
Confidence 344568888888888887754 4455778888889999999888887776443211 11 22133444555555
Q ss_pred cCchHH-----HHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHH----HHHhCCChHHHHHH---HHHHHHH-HHHhc
Q 000834 471 CKSNTT-----CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL----VEKSGHNIEKVREK---MRELTKQ-IVNFY 537 (1263)
Q Consensus 471 ~DtN~q-----V~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~L----veKlGD~K~~vR~~---~~~il~~-l~~v~ 537 (1263)
...... ++..|+.+ ..+...+-. ...|. .|+-++ ++-..|+-..+++. ...+... +...
T Consensus 135 ~~~dial~~g~mlRec~k~-e~l~~~iL~-~~~f~-----~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n- 206 (335)
T PF08569_consen 135 ENPDIALNCGDMLRECIKH-ESLAKIILY-SECFW-----KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN- 206 (335)
T ss_dssp GSTTTHHHHHHHHHHHTTS-HHHHHHHHT-SGGGG-----GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-
T ss_pred cCccccchHHHHHHHHHhh-HHHHHHHhC-cHHHH-----HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH-
Confidence 543322 22223322 112222111 11111 111111 11111111111110 1111111 1112
Q ss_pred CCcccHHHHHHhhccCChHhHHHHHHHHHHHHHh-hccccc----CccchHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000834 538 SATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH-HGAEIS----GQLKSLQIVASLTAERDGEIRKAALNTLATG 608 (1263)
Q Consensus 538 ~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~-~G~~v~----~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~l 608 (1263)
....|.+...-+.|.|--+|..+|..|+.++.. ....+. ....-|+.+..++.|....++-.|..++-.+
T Consensus 207 -~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 207 -YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp -HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 245666555557899999999999999999853 333332 2445678999999999999999999887643
No 170
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=55.65 E-value=3.7e+02 Score=30.86 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=79.8
Q ss_pred HHhHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhh-ccccc
Q 000834 504 AAVFLPCLVEKSGHNI-----EKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHH-GAEIS 577 (1263)
Q Consensus 504 a~~~lP~LveKlGD~K-----~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~-G~~v~ 577 (1263)
.-..+|.++..+-+.+ +.+++.+..+. .++...+-. -+..++.....+.-|.+.+-+..+...|.++ ....
T Consensus 109 ~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La-~~a~~~~~~-~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~- 185 (262)
T PF14225_consen 109 LLALLPRLLHAFDDPNPIQPDQECIEIAEALA-QVAEAQGLP-NLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH- 185 (262)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHH-HHHHhCCCc-cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-
Confidence 5667899998886665 34444444333 445444333 3445555553333377777777776666553 3221
Q ss_pred CccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH------CHH----HHHHh-cCCCHHHHHHHHHHHHHH
Q 000834 578 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKIL------GED----IWRYV-GKLTDAQKSMLDDRFKWK 638 (1263)
Q Consensus 578 ~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~------G~~----l~~~l-~~L~~~~~~~Leer~kr~ 638 (1263)
....+-.+..++...-+.+|...+.++..+..++ |.+ +-+++ +++-+.....|++=..++
T Consensus 186 -~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 186 -EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALEVLDEIVTRS 256 (262)
T ss_pred -HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHHHHHHHHhhc
Confidence 1345566788888888999999999999887664 444 23344 345556666666655444
No 171
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=54.73 E-value=24 Score=35.56 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 000834 592 ERDGEIRKAALNTLATGYK 610 (1263)
Q Consensus 592 D~d~~VR~AAl~~l~~ly~ 610 (1263)
+-...||.+|-.++..+|.
T Consensus 101 ~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 101 SLNEKVREEAQELIKAIFS 119 (122)
T ss_pred chhHHHHHHHHHHHHHHhc
Confidence 3567899999999998874
No 172
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=54.48 E-value=1.2e+02 Score=38.73 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=73.9
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHhcC------------chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC-Cch
Q 000834 194 CLGDNKKHMRECTLTVLDAWLAAVH------------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA 260 (1263)
Q Consensus 194 kl~DkK~~VR~aa~~aL~a~~~~~~------------l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~-~~~ 260 (1263)
-|...-=++|-+..+++-.++++.- +..+++.+.+-+.+. +|-+|.-++..+...+..-... ..-
T Consensus 307 LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~--~py~RtKalqv~~kifdl~sk~~~~r 384 (1128)
T COG5098 307 LLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT--YPYTRTKALQVLEKIFDLNSKTVGRR 384 (1128)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHhCcccccchH
Confidence 3444445788888888877775431 345566666777775 6999999999888777643322 223
Q ss_pred hhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhh
Q 000834 261 AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 299 (1263)
Q Consensus 261 ~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~ 299 (1263)
.+++.-+..||+|++.-||..|.+++..+...-.+..+.
T Consensus 385 ~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 385 HEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 455556888999999999999999999988766665443
No 173
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=54.40 E-value=66 Score=33.94 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=73.4
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCC----Cc-----hhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 115 PDWKVRLESIEAVNKILEEANKRIQPA----GT-----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 115 k~WK~RkEaLe~L~~il~~a~~~i~p~----~~-----~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
.++..|.=||+-|+.+++.+...+... .+ .+++..|-+-+...+..+...++.++..+...++..++....
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999998644444311 11 344455555554556999999999999999999999999999
Q ss_pred chHHHHHHHhCCCcH---HHHHHHHHHHHHHHH
Q 000834 186 GVLSDILKCLGDNKK---HMRECTLTVLDAWLA 215 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~---~VR~aa~~aL~a~~~ 215 (1263)
.+++.++..+-+++. .-|..+.+++..++.
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 999999986554333 466667777776664
No 174
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.86 E-value=75 Score=40.49 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=89.7
Q ss_pred hccccHHHHHHHHHHHHHHHHhcCchh-----hhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHH----HhcC---chh
Q 000834 154 LYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL----AAVH---LDK 221 (1263)
Q Consensus 154 L~DsN~~V~~~AL~~l~~LA~alg~~f-----~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~----~~~~---l~~ 221 (1263)
|.-.|.+|+..|+..+-.+..--+++. +..+.-=+--+..-|.|--+.||..|..-+-.++ +.++ +-.
T Consensus 183 L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ 262 (1005)
T KOG1949|consen 183 LKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILID 262 (1005)
T ss_pred hccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 345899999999887766655445443 2222222333445678999999988887766554 3343 345
Q ss_pred hHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 222 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 222 ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
++..|...|.+. ....+|-.+++-|...+..--..+.+...++.+-..|.|++..||-|+.+.+..+-
T Consensus 263 ll~kI~d~~a~d-t~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 263 LLKKITDELAFD-TSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHhhhc-cchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 566666777655 35689999988887776532222234444454666789999999999999888664
No 175
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=52.78 E-value=2e+02 Score=30.01 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=34.1
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhccccc-------hhhHHHHHHHHHHHHH
Q 000834 424 DLHRRLLSTDFKKQVDGLEMLQKALPSIR-------KDIIEVLDILLRWFVL 468 (1263)
Q Consensus 424 ~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~-------~~~~~~lDlllk~l~l 468 (1263)
++...|.|..=++|-+|++.|..++.... ...-..++.||+++..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~ 59 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEK 59 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHH
Confidence 46788899999999999999999986652 2233457777777753
No 176
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=51.20 E-value=1.2e+02 Score=36.16 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=56.4
Q ss_pred HHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHHHHHHHHhhccCChhHHHH
Q 000834 171 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPYVTTALTDAKLGAEGRKD 242 (1263)
Q Consensus 171 ~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~--------~ll~~l~~~L~~kk~~p~vR~e 242 (1263)
.++..++..+ .-.+.++-.|.+++..+.+.|.--|+..++++++.||-. .+...|..-+.++ ..++++..
T Consensus 31 DvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~-~h~kV~~k 108 (462)
T KOG2199|consen 31 DVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESK-AHPKVCEK 108 (462)
T ss_pred HHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhc-ccHHHHHH
Confidence 3444555566 667788888999999999999999999999999998721 2222232223333 35777776
Q ss_pred HHHHHHHHHccCCC
Q 000834 243 LFDWLSKQLTGLSG 256 (1263)
Q Consensus 243 ~L~~L~~~l~~~~~ 256 (1263)
+-..+.++...+..
T Consensus 109 ~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 109 MRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHHHHhcc
Confidence 65555566555543
No 177
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=50.77 E-value=77 Score=40.31 Aligned_cols=69 Identities=13% Similarity=0.239 Sum_probs=45.5
Q ss_pred cHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000834 542 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 610 (1263)
Q Consensus 542 v~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~ 610 (1263)
+++.+.+.+..-+|-+|.-.|..+..+++.--..+-...+....+..++.|+..-||..|+..+..+..
T Consensus 347 Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 347 LVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 344555667777777787777777666543221111112334667788889999999999999887743
No 178
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=50.67 E-value=1.6e+02 Score=34.71 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=113.8
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHH-hccCCCCCCchhHHHHHHhhh-ccccHHHHHHHHHHHHHHHHhcCchhhhh
Q 000834 106 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 183 (1263)
Q Consensus 106 ~~ll~~l~dk~WK~RkEaLe~L~~il~~-a~~~i~p~~~~eL~~aLk~rL-~DsN~~V~~~AL~~l~~LA~alg~~f~~~ 183 (1263)
+.+...+-+.+-..-..|.-+.+++++. .+|.|++---..++.-+-..+ ...+-.+.-.|.=+|..+|.|....-+--
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 3577788888999999999999999974 456776640022333333333 33444556667677888887754321111
Q ss_pred -hhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-Cc------hhhHHHHHHHHhhccC-ChhHHHHHHHHHHHHHccC
Q 000834 184 -SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL------DKMVPYVTTALTDAKL-GAEGRKDLFDWLSKQLTGL 254 (1263)
Q Consensus 184 -~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~-~l------~~ll~~l~~~L~~kk~-~p~vR~e~L~~L~~~l~~~ 254 (1263)
-..-+|-++..|.+....||+.+.=||-.++.-. +. ..+++.+.+-+.+..+ -..+|..+ |....+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~T--WtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT--WTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhH--HHHHHhhCC
Confidence 1245788889999999999999999987765321 11 1233444454443221 13467666 766666543
Q ss_pred C-CCCc---hhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 255 S-GFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 255 ~-~~~~---~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
+ +.++ ....++.+.+.+.-.++||---|+=++..+.
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 3 3333 2344444677788999999887777766543
No 179
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=49.86 E-value=1.3e+02 Score=29.60 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHHhhhcc----ccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000834 146 LFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK 221 (1263)
Q Consensus 146 L~~aLk~rL~D----sN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ 221 (1263)
++.-+...+.| ....-...++..++.+.+-.|+....+...+...+-..+... .+|+.+.+|-+.++...+.+.
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 44444444544 556667788899999998444444444433333333333333 899999999999999887544
Q ss_pred hHH
Q 000834 222 MVP 224 (1263)
Q Consensus 222 ll~ 224 (1263)
+.+
T Consensus 90 l~~ 92 (107)
T PF08064_consen 90 LGP 92 (107)
T ss_pred HHH
Confidence 333
No 180
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=48.88 E-value=1.1e+02 Score=37.52 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=62.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccCC--------CC-CCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHh--------
Q 000834 113 ESPDWKVRLESIEAVNKILEEANKRI--------QP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA-------- 175 (1263)
Q Consensus 113 ~dk~WK~RkEaLe~L~~il~~a~~~i--------~p-~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~a-------- 175 (1263)
.+-.-|+|..||--+...++.-.++. -| ++-+.-+..+.-.++|.|.+....||+.+..|..|
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456889999887777766421221 11 11122234445567899999999999988887664
Q ss_pred --cCc-hhhhhhhchHHHHHHH--------hCCCcHHHHHHHHHHHHHHHHhcC
Q 000834 176 --MGP-AVEKSSKGVLSDILKC--------LGDNKKHMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 176 --lg~-~f~~~~~~llp~lL~k--------l~DkK~~VR~aa~~aL~a~~~~~~ 218 (1263)
+|+ .|.++...+...+++. -.+..+.+....++||-.++....
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p 139 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAP 139 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCc
Confidence 332 3666666555544431 134555555555555555555444
No 181
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=48.40 E-value=4.3e+02 Score=32.28 Aligned_cols=186 Identities=14% Similarity=0.089 Sum_probs=102.0
Q ss_pred hhHHHHhhhcCccHHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhc
Q 000834 421 FREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI-----IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDE 495 (1263)
Q Consensus 421 ~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~-----~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~ 495 (1263)
+...+.++..++-|-+|..++-.+.+.+..++-.. .+++-.-+--+.-.+.|-.+.+.++.|+.|.-++..+...
T Consensus 394 lddileaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlike 473 (666)
T KOG4825|consen 394 LDDILEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKE 473 (666)
T ss_pred hhhHHHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 34445555666667666666666655554332111 1111111111111334555666677777776666655432
Q ss_pred CCCcchHHHHhH----HHHHHHHhCCChHHHHHHHHHHHHHHHH--hcCCcccHH-HHHHhh-ccCChHhHHHHHHHHHH
Q 000834 496 GYSLTESEAAVF----LPCLVEKSGHNIEKVREKMRELTKQIVN--FYSATKTLP-YILEGL-RSKNNRTRIECVDLVGF 567 (1263)
Q Consensus 496 ~~~lsd~ea~~~----lP~LveKlGD~K~~vR~~~~~il~~l~~--v~~~skv~~-~ll~gl-ksKN~rvR~ecL~~L~~ 567 (1263)
..|+.++-..+ +|.+.-.-||.-..++.-+.+.+..+.. ....-.+++ ++...+ .+|.+..-..-...|.+
T Consensus 474 -hkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLar 552 (666)
T KOG4825|consen 474 -HKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLAR 552 (666)
T ss_pred -hhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHH
Confidence 46777764433 3455566788887887766666655443 122222333 333334 36666665556666777
Q ss_pred HHHhhcccccCccchHHHHHHhh-----cCCCHHHHHHHHHHHHHHHH
Q 000834 568 LIDHHGAEISGQLKSLQIVASLT-----AERDGEIRKAALNTLATGYK 610 (1263)
Q Consensus 568 lI~~~G~~v~~~~k~L~~Iak~i-----~D~d~~VR~AAl~~l~~ly~ 610 (1263)
++...|-...+ ....|++.. ..+-.++|.+|...+..+|+
T Consensus 553 llkdlgkGrag---fiediakkfgVpaeehglndkreaafaiicdmtr 597 (666)
T KOG4825|consen 553 LLKDLGKGRAG---FIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTR 597 (666)
T ss_pred HHHhcCCCccc---hhHHHHHHhCCCccccchhHHHHhHhhhhhhhcc
Confidence 77777744221 124444433 45667899999988887765
No 182
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=48.35 E-value=2.2e+02 Score=30.46 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHh
Q 000834 117 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 195 (1263)
Q Consensus 117 WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl 195 (1263)
--.||.|+|-+..+++.+..++ ++.+++..+...+.| ..-+...+..++..++..--..+.+++..++.++-..+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~---~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI---DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999998532333 578889888888999 88999999999999987655555555666666555443
No 183
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.46 E-value=9.4e+02 Score=33.17 Aligned_cols=198 Identities=19% Similarity=0.206 Sum_probs=113.7
Q ss_pred ccccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCC--CCchhHHHHHHh------hhccccHHHHHHH--H
Q 000834 97 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP--AGTGELFGGLRG------RLYDSNKNLVMAT--L 166 (1263)
Q Consensus 97 rvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p--~~~~eL~~aLk~------rL~DsN~~V~~~A--L 166 (1263)
+.|+.+.|.+-+|.-++...-.++.+-.+.|..++..+.++-.- +--..+++.|.. .++|.=..+.... .
T Consensus 190 ~e~flsl~~~~~yrllEn~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~~ 269 (1251)
T KOG0414|consen 190 DEDFLSLIVDPIYRLLENEHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGSV 269 (1251)
T ss_pred HHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 55677777777788888776677777777777777643222100 001222332221 1122222222222 2
Q ss_pred HHHHHHHHhcCc------------hhhhhh---hchHHH--------HHHHhCCCcHHHHHHHHHHHHHHHHh-cC----
Q 000834 167 ITLGAVASAMGP------------AVEKSS---KGVLSD--------ILKCLGDNKKHMRECTLTVLDAWLAA-VH---- 218 (1263)
Q Consensus 167 ~~l~~LA~alg~------------~f~~~~---~~llp~--------lL~kl~DkK~~VR~aa~~aL~a~~~~-~~---- 218 (1263)
.+++.|.+..|. .|..++ ..++|. +++-|.-..=.+|.+..+++-.++.+ ..
T Consensus 270 sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~ 349 (1251)
T KOG0414|consen 270 SLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEEL 349 (1251)
T ss_pred HHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhh
Confidence 344444443332 122221 122332 33335555567888888887766543 22
Q ss_pred ------c-hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC-CchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 219 ------L-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 219 ------l-~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~-~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
+ +.+++.+.+-+.+- ++-+|..+|....+.+...... ......+.-++.+|+|++.-||++|.+.+..+.
T Consensus 350 ~~~sk~~r~~~le~l~erl~Dv--sa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L 427 (1251)
T KOG0414|consen 350 EEMSKSLRDELLELLRERLLDV--SAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLL 427 (1251)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 1 12444455555443 6899999999888877654432 234555566788999999999999999999888
Q ss_pred HhcChh
Q 000834 291 RAGGQE 296 (1263)
Q Consensus 291 ~~vG~~ 296 (1263)
.+..+.
T Consensus 428 ~~~Pfs 433 (1251)
T KOG0414|consen 428 DRHPFS 433 (1251)
T ss_pred hcCCch
Confidence 776654
No 184
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.29 E-value=4.2e+02 Score=35.07 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=60.6
Q ss_pred HHHhhhcCc-cHHHHHHHHHHHHHhccccchhhHHH--HHHHHHHHHHhh-cCchHHHHHHHHHhHHHHHHHHhhcCCCc
Q 000834 424 DLHRRLLST-DFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSL 499 (1263)
Q Consensus 424 ~l~~~Lfs~-dwk~Rl~ale~L~~~l~~~~~~~~~~--lDlllk~l~lrl-~DtN~qV~~k~Le~L~~l~~~L~~~~~~l 499 (1263)
-++..|... |--..++++.+|.+.+.-+.++.... .+-++-.+..-+ .+.|+-+++.++..|..+++.|-......
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 355556654 88889999999999875443332211 222332222222 57899999999998888999887766666
Q ss_pred chHHHHhHHHHHHHHhC
Q 000834 500 TESEAAVFLPCLVEKSG 516 (1263)
Q Consensus 500 sd~ea~~~lP~LveKlG 516 (1263)
.++. .+|.|++||-
T Consensus 251 V~~~---aIPvl~~kL~ 264 (1051)
T KOG0168|consen 251 VDEH---AIPVLLEKLL 264 (1051)
T ss_pred eccc---chHHHHHhhh
Confidence 6654 4899999973
No 185
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=46.41 E-value=3.6e+02 Score=31.37 Aligned_cols=110 Identities=21% Similarity=0.353 Sum_probs=64.4
Q ss_pred HHhhhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcC------chHHHHHHHHHhHHHHHH
Q 000834 417 MMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK------SNTTCLLKVLEFLPELFD 490 (1263)
Q Consensus 417 ~~~~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~D------tN~qV~~k~Le~L~~l~~ 490 (1263)
+.-+|.+-+.+.+..+|-..|-+|++.|+.. .. +.-++-|+..-|.| .|.+++..++.+..
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~d-----sG----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~---- 261 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRND-----SG----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYS---- 261 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cc----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----
Confidence 3346777777777888989999999887632 11 22222333222222 24445544554333
Q ss_pred HHhhcCCCcchHHHHhHHHHH----HH-HhCCChHH-----HHHHHHHHHHHHHHhcCC
Q 000834 491 TLRDEGYSLTESEAAVFLPCL----VE-KSGHNIEK-----VREKMRELTKQIVNFYSA 539 (1263)
Q Consensus 491 ~L~~~~~~lsd~ea~~~lP~L----ve-KlGD~K~~-----vR~~~~~il~~l~~v~~~ 539 (1263)
.|-...|-|.|.-...++|.+ +. |+|..-+. +|+-+-.+++.++.-|+.
T Consensus 262 sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 262 SLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred HHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 344567788887777777765 33 67654433 677666666666655543
No 186
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=46.04 E-value=3e+02 Score=36.79 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=111.4
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHH---------------------
Q 000834 108 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL--------------------- 166 (1263)
Q Consensus 108 ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL--------------------- 166 (1263)
++.++-|++-.+|..||..+.+++.-..-+. -+.++.++-.--.|.-+.++..+-
T Consensus 477 ~~~rClDkaaavR~~al~s~tk~l~l~~~~~----~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~ 552 (1529)
T KOG0413|consen 477 VYMRCLDKAAAVRLHALNSLTKILQLQSHRE----AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL 552 (1529)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccc----hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence 5778889999999999999999986210010 112222221111133333332211
Q ss_pred ---HHHHHHH-HhcCchhhhhhhchHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh---hccCChh
Q 000834 167 ---ITLGAVA-SAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT---DAKLGAE 238 (1263)
Q Consensus 167 ---~~l~~LA-~alg~~f~~~~~~llp~lL~kl~-DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~---~kk~~p~ 238 (1263)
+++...- +-|++.-..+-+.++--|+-++. |.|.+|+.++..-+..+...|....++|...--|. .. +-..
T Consensus 553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd-~~vs 631 (1529)
T KOG0413|consen 553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRD-RMVS 631 (1529)
T ss_pred cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcC-cchH
Confidence 1222111 11232222334556667777887 99999999999999999999987777776444333 22 2356
Q ss_pred HHHHHHHHHHHHHccCCCC-CchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 239 GRKDLFDWLSKQLTGLSGF-PDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 239 vR~e~L~~L~~~l~~~~~~-~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
+|+..++-|++.+..-+.. ..-+.++..+...++|...+|-+.|.+.+..+.
T Consensus 632 vrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 632 VRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 8888888888777544332 233677778888899999999999988665543
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=45.19 E-value=28 Score=27.58 Aligned_cols=29 Identities=21% Similarity=-0.085 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhChhhHHHHHHHHHHHH
Q 000834 9 LCINLLVQVTTHFMWNSTSGLVSSLRFLR 37 (1263)
Q Consensus 9 ~~~~~l~k~~~h~d~~VR~~ai~Ll~~ly 37 (1263)
-+|+.|.+++.|.|..|+.+|.-.++.|-
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47888999999999999999999988764
No 188
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.10 E-value=97 Score=41.01 Aligned_cols=80 Identities=9% Similarity=0.118 Sum_probs=62.9
Q ss_pred HhhhccccHHHHHHHHHHHHHHHHhcCc---hhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------ch
Q 000834 151 RGRLYDSNKNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LD 220 (1263)
Q Consensus 151 k~rL~DsN~~V~~~AL~~l~~LA~alg~---~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~-------l~ 220 (1263)
...|++.+..++..+|.++..-..-+.. -+-|.+...-|++++++.++.+.+...|.+|+..+.+.+| +.
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~ 888 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLE 888 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3456789999999999988865554432 3678888999999999999999999999999999999886 34
Q ss_pred hhHHHHHHHH
Q 000834 221 KMVPYVTTAL 230 (1263)
Q Consensus 221 ~ll~~l~~~L 230 (1263)
+++|.+.+.+
T Consensus 889 dvlP~l~~~~ 898 (1014)
T KOG4524|consen 889 DVLPWLKHLC 898 (1014)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 189
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=44.11 E-value=1.3e+02 Score=36.14 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHh---CCCcHHHHHHHHHHHHHHHHhc-----Cch------hhHHH
Q 000834 160 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDNKKHMRECTLTVLDAWLAAV-----HLD------KMVPY 225 (1263)
Q Consensus 160 ~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl---~DkK~~VR~aa~~aL~a~~~~~-----~l~------~ll~~ 225 (1263)
.-...|.+.+..|++.-++.+.+-+..++..++... ...+..-+++|.-.+.++.... |.. .+.+.
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 345667888888887766666666666666666632 3344456677777777766322 111 12222
Q ss_pred ----HHHHHh-hccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHH
Q 000834 226 ----VTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 286 (1263)
Q Consensus 226 ----l~~~L~-~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L 286 (1263)
+...|. +.+..|-+|..++.++...-..++ ...+..+++.++.+|.+.+.-|+..|.-|+
T Consensus 306 f~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~-~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 306 FSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP-KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 223344 223368899999999887766554 234566777799999999999999887664
No 190
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=44.03 E-value=35 Score=27.04 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=25.4
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 262 HLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 262 ~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
..+++++.+|.+.+.+||+.|..+|..+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45678999999999999999999998775
No 191
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=44.02 E-value=2.8e+02 Score=35.87 Aligned_cols=145 Identities=10% Similarity=0.123 Sum_probs=98.0
Q ss_pred hHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhH
Q 000834 145 ELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 223 (1263)
Q Consensus 145 eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll 223 (1263)
.+..+|+..++ -.|+.+...-++=...|.+.+.++ .....++|-|...+.|.-..+.+.+.+.+-.+.+.+.+..+-
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk 426 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK 426 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH
Confidence 34456666554 344444444455556667776544 345678888889999999999999999999999988654444
Q ss_pred HHHHHHHh---hccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 224 PYVTTALT---DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 224 ~~l~~~L~---~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
..|+..+. -+..+..+|..+|-.+...+..+. .....+.+.|+..|..-+++++--.-..+...++..
T Consensus 427 ~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 427 QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred HHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 44444432 122357899999999888886554 234567778888888877777776666655555433
No 192
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=43.48 E-value=28 Score=35.12 Aligned_cols=42 Identities=29% Similarity=0.226 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhhhhhcCCCCHHHHHHHHHHHHhhhChHHHhhcCCCCCCchHHHHHHHHHHHHh
Q 000834 891 LVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKL 955 (1263)
Q Consensus 891 Lv~KCLwK~~K~l~~~~~~i~~~~lL~~ih~Fl~~~p~~~~r~r~~~~D~PlRTvKTiL~~lvk~ 955 (1263)
=||+-||.... .+ .-+||.++..- -|.-.-||||+|..|||-
T Consensus 10 eVM~ilW~~~~---~t---------~~eI~~~l~~~-----------~ews~sTV~TLl~RL~KK 51 (123)
T COG3682 10 EVMEILWSRGP---AT---------VREIIEELPAD-----------REWSYSTVKTLLNRLVKK 51 (123)
T ss_pred HHHHHHHHcCC---cc---------HHHHHHHHhhc-----------ccccHHHHHHHHHHHHhc
Confidence 48999999742 11 45778888752 244445999999999884
No 193
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.18 E-value=1.2e+02 Score=40.83 Aligned_cols=128 Identities=14% Similarity=-0.003 Sum_probs=82.0
Q ss_pred hhhccccHHHHHHHHHHHHHHHHhcCchhh--hhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHH-
Q 000834 152 GRLYDSNKNLVMATLITLGAVASAMGPAVE--KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVP- 224 (1263)
Q Consensus 152 ~rL~DsN~~V~~~AL~~l~~LA~alg~~f~--~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~----l~~ll~- 224 (1263)
.|..|....+...+++-|+....-.-.-|- .|++.+. ..|.|+...||..+..+|.-+++.-. +..+..
T Consensus 294 HRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiG----WtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsR 369 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIG----WTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSR 369 (1048)
T ss_pred eecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhc----ceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 356699999999988888888776655542 3444332 34679999999999999999988732 222222
Q ss_pred ---HHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHH
Q 000834 225 ---YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 287 (1263)
Q Consensus 225 ---~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~ 287 (1263)
.|++- ..+-.++-||...|..+... ..........|.+|+.++=|.++.||.+|...+-
T Consensus 370 FK~RIVeM-adrd~~~~Vrav~L~~~~~~---~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 370 FKDRIVEM-ADRDRNVSVRAVGLVLCLLL---SSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHHHHHH-HhhhcchhHHHHHHHHHHHH---hcccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 22222 22323466777765443222 2122233567788999999999999988876543
No 194
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=41.20 E-value=4.7e+02 Score=33.09 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=45.2
Q ss_pred CCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHH-HhCCCcHHHHHHHHHHHHHHHHh
Q 000834 138 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAA 216 (1263)
Q Consensus 138 i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~-kl~DkK~~VR~aa~~aL~a~~~~ 216 (1263)
+.+..+...+.+|+-.|.-.|....-.|+.+|..||..-- +...++..=++ -..|.+.++..-|+.+|..-...
T Consensus 296 v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P-----~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~ 370 (898)
T COG5240 296 VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP-----QKVSVCNKEVESLISDENRTISTYAITTLLKTGTE 370 (898)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC-----ceeeecChhHHHHhhcccccchHHHHHHHHHcCch
Confidence 4444456667777777777777777777777777765422 22222222222 23566666666555555433222
Q ss_pred cCchhhHHHHH
Q 000834 217 VHLDKMVPYVT 227 (1263)
Q Consensus 217 ~~l~~ll~~l~ 227 (1263)
-+++.++..|.
T Consensus 371 e~idrLv~~I~ 381 (898)
T COG5240 371 ETIDRLVNLIP 381 (898)
T ss_pred hhHHHHHHHHH
Confidence 23444444333
No 195
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.90 E-value=1e+02 Score=39.37 Aligned_cols=106 Identities=22% Similarity=0.203 Sum_probs=73.8
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
.+++-|+|.--.+|-+|.+.|.++...-=.-|.++-+.+|+.-+-.-+. |+-.-|.....++|..++.- +-..+...
T Consensus 224 ~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le 301 (1005)
T KOG1949|consen 224 ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLE 301 (1005)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHH
Confidence 3556677777889999999999998742122333323455444444443 77777877777877776542 44566777
Q ss_pred chHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000834 186 GVLSDILKCLGDNKKHMRECTLTVLDAWL 214 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~aa~~aL~a~~ 214 (1263)
.++|.+=-.+-|+-..||-|+..-|..+-
T Consensus 302 ~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 302 QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 78887667788999999999998887653
No 196
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=40.56 E-value=1.6e+02 Score=29.06 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=50.7
Q ss_pred hHHHHHHhhhcccc--H--HHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000834 145 ELFGGLRGRLYDSN--K--NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 220 (1263)
Q Consensus 145 eL~~aLk~rL~DsN--~--~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~ 220 (1263)
.++..+...+.|.. + .-...++..++.+.+.+|+....+...+...+-..+. ++..|..+.+|...++.+...+
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 34555556666655 2 3367788999999998776555555554444444554 5569999999999999887644
Q ss_pred h
Q 000834 221 K 221 (1263)
Q Consensus 221 ~ 221 (1263)
.
T Consensus 89 ~ 89 (107)
T smart00802 89 E 89 (107)
T ss_pred H
Confidence 3
No 197
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=40.48 E-value=3.5e+02 Score=35.57 Aligned_cols=133 Identities=13% Similarity=0.101 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHHHHHhcCchhhhhhh--chHHHHHHHhCCCcH--HHHHHHHHHHHHHHHh--c-C-c--hhhHHHHH
Q 000834 158 NKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKK--HMRECTLTVLDAWLAA--V-H-L--DKMVPYVT 227 (1263)
Q Consensus 158 N~~V~~~AL~~l~~LA~alg~~f~~~~~--~llp~lL~kl~DkK~--~VR~aa~~aL~a~~~~--~-~-l--~~ll~~l~ 227 (1263)
+--.+..++.+++.|.- .+.++...+. .++|-+.+.|..... .+.-.+.-.+-+++.. + . + ..+++.+.
T Consensus 504 ~ee~~vE~LGiLaNL~~-~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li 582 (708)
T PF05804_consen 504 SEEFVVECLGILANLTI-PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLI 582 (708)
T ss_pred cHHHHHHHHHHHHhccc-CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHH
Confidence 44444444444444432 2446677664 688888888865433 2333333333332210 1 0 1 24455666
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHccCCCCCc----hhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 228 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD----AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 228 ~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~----~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
+-|..++-.-..-..++-.+.+.+. ++...+ -...+.-++..++|+|++||+.|..||..++.+
T Consensus 583 ~LL~~kqeDdE~VlQil~~f~~ll~-h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 583 ELLNAKQEDDEIVLQILYVFYQLLF-HEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHc-ChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 6665543122222222212223332 222111 123334478889999999999999999988755
No 198
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=40.34 E-value=1.1e+03 Score=32.10 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=85.7
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--C-----
Q 000834 146 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--H----- 218 (1263)
Q Consensus 146 L~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~--~----- 218 (1263)
++..|-..++|.+..|.-.|++.++.++..+-.. .+..++..+++.++--... .+=..++.++++-. |
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~--~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDD--SAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCch--hHHHHHHHHHHHHHhcCCcchH
Confidence 3444555578899999999999999999988744 3445566666655432210 12235555555532 3
Q ss_pred -chhhHHHHHHHHh--hcc----CChhHHHHHHHHHHHHHccCCCCCchhhhHH----H-HHhhhcCCCHHHHHHHHHHH
Q 000834 219 -LDKMVPYVTTALT--DAK----LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK----P-ASIAMTDKSSDVRKAAEACI 286 (1263)
Q Consensus 219 -l~~ll~~l~~~L~--~kk----~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~----p-l~~~L~D~~~eVR~aA~~~L 286 (1263)
++.+++.|..++. ... .+-.+|-.+. |+.=.|...-...++++++. . +...+=|+.-++|.||.+++
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAc-Y~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAAC-YVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHH-HHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 3567777776653 110 1234776654 44334443322334444333 2 35567899999999999988
Q ss_pred HHHHHhcCh
Q 000834 287 VEILRAGGQ 295 (1263)
Q Consensus 287 ~~l~~~vG~ 295 (1263)
-+.+-..|+
T Consensus 496 qE~VGR~~n 504 (1133)
T KOG1943|consen 496 QENVGRQGN 504 (1133)
T ss_pred HHHhccCCC
Confidence 876654443
No 199
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=40.11 E-value=2.9e+02 Score=38.01 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=62.5
Q ss_pred HHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHh----hccCChHhHHHHHHHHHHHHHhhcccccCc
Q 000834 504 AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEG----LRSKNNRTRIECVDLVGFLIDHHGAEISGQ 579 (1263)
Q Consensus 504 a~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~g----lksKN~rvR~ecL~~L~~lI~~~G~~v~~~ 579 (1263)
....+|.++.-+-..-..+|-++-.++..+...-.-. ..-++.++ ++.-..-+|.+...++..++..-+.....+
T Consensus 814 ~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e-~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~ 892 (1549)
T KOG0392|consen 814 LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRE-TMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVP 892 (1549)
T ss_pred hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccc
Confidence 3455666666565555677777666665554433222 22222222 233333334444444444444433221112
Q ss_pred cchH--HHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHH
Q 000834 580 LKSL--QIVASLTAERDGEIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 580 ~k~L--~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~ 615 (1263)
.-.| +.+..+++|.+..||.+|..++..+...++-.
T Consensus 893 ~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 893 YNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred cceeehhhhhcccccchHHHHHHHHHHHHHHhcccccc
Confidence 2222 77788899999999999999999988777543
No 200
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=39.72 E-value=1.1e+02 Score=33.16 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=74.9
Q ss_pred HHhHHHHHHHHhCCChHHHHHHHHHHHHHHHH--hcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccC---
Q 000834 504 AAVFLPCLVEKSGHNIEKVREKMRELTKQIVN--FYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG--- 578 (1263)
Q Consensus 504 a~~~lP~LveKlGD~K~~vR~~~~~il~~l~~--v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~--- 578 (1263)
+.-+++.+++-+-+....+|-.+-+++..+.. .+.|..++|+++--..+.|+.+|......+..+.++|+--+..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44567778887778888999998888887775 6778889999988777899999999999999999999732221
Q ss_pred --ccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHC
Q 000834 579 --QLKSLQIVASLTAERDGEIRKAALNTLATGYKILG 613 (1263)
Q Consensus 579 --~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G 613 (1263)
-..++..-..+..|.....+......+..+|..++
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 11223333444444443333335555555565554
No 201
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=38.97 E-value=5.9e+02 Score=28.52 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCchhhhhhhchHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhhccCChhHHHH
Q 000834 166 LITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKD 242 (1263)
Q Consensus 166 L~~l~~LA~alg~~f~~~~~~llp~lL~kl-~DkK~~VR~aa~~aL~a~~~~~--~l~~ll~~l~~~L~~kk~~p~vR~e 242 (1263)
...+..++..... +...+++.|-..| ++..+.++..+.++|..+.+.. .+......+..-|.... .|.+-..
T Consensus 105 a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~-rp~v~~~ 179 (234)
T PF12530_consen 105 AASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDY-RPLVLKS 179 (234)
T ss_pred HHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCcc-chHHHHH
Confidence 3456666665433 7888899998989 8999999999999999999653 44444455555554332 4555555
Q ss_pred HHHHHH
Q 000834 243 LFDWLS 248 (1263)
Q Consensus 243 ~L~~L~ 248 (1263)
+..|+.
T Consensus 180 l~~l~~ 185 (234)
T PF12530_consen 180 LCSLFA 185 (234)
T ss_pred HHHHHH
Confidence 555543
No 202
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=38.48 E-value=2.5e+02 Score=28.41 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=50.8
Q ss_pred cCCCCCCchhHHHHHHhhh-ccccHHHHHHHHHHHHHHHHhcCchhhhhh--hchHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000834 136 KRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDA 212 (1263)
Q Consensus 136 ~~i~p~~~~eL~~aLk~rL-~DsN~~V~~~AL~~l~~LA~alg~~f~~~~--~~llp~lL~kl~DkK~~VR~aa~~aL~a 212 (1263)
.++..+ -.+++..|.+.| ...+..+...|+.=|+.+++... .-...+ -..=..|++-+.+..+.||..|+.|+..
T Consensus 35 ~kf~~~-~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p-~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 35 DKFEEN-NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP-NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp GGGSSG-GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G-GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHc-ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHCh-hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 455443 478899999988 44467777788888898888752 111111 1223455666778888888888888887
Q ss_pred HHH
Q 000834 213 WLA 215 (1263)
Q Consensus 213 ~~~ 215 (1263)
++-
T Consensus 113 lm~ 115 (119)
T PF11698_consen 113 LMV 115 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 203
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=37.41 E-value=2.2e+02 Score=32.90 Aligned_cols=162 Identities=13% Similarity=0.112 Sum_probs=103.8
Q ss_pred CCCChhHHHHHH-HHHHHHHH-Hh-ccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCch----hhh--h
Q 000834 113 ESPDWKVRLESI-EAVNKILE-EA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA----VEK--S 183 (1263)
Q Consensus 113 ~dk~WK~RkEaL-e~L~~il~-~a-~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~----f~~--~ 183 (1263)
..+.||...-.. -.+.=++. .. .+.+... ..=++..+-..+.|....+...++.++..+...+... +.. +
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~-~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl 163 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVLSQLDRPWISQH-WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGL 163 (282)
T ss_pred ccCCcccCCcccHHHHHHHHHhcCCcchHHHh-hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcCh
Confidence 667898765322 22333333 11 1122211 3445566667788999999999999999999977643 343 4
Q ss_pred hhchHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHhc----------CchhhH-HHHHHHHhhccC--ChhHHHH
Q 000834 184 SKGVLSDILKCLG--------DNKKHMRECTLTVLDAWLAAV----------HLDKMV-PYVTTALTDAKL--GAEGRKD 242 (1263)
Q Consensus 184 ~~~llp~lL~kl~--------DkK~~VR~aa~~aL~a~~~~~----------~l~~ll-~~l~~~L~~kk~--~p~vR~e 242 (1263)
...+..++..+|- +....+-.++-.||..++... .++.++ +.|...+.+... .+.++..
T Consensus 164 ~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ 243 (282)
T PF10521_consen 164 FSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTV 243 (282)
T ss_pred HHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHH
Confidence 6677778888887 788889999999999987642 133444 336677766532 4788888
Q ss_pred HHHHHHHHHccCCCC--CchhhhHHHHHhhhcCCC
Q 000834 243 LFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS 275 (1263)
Q Consensus 243 ~L~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~ 275 (1263)
+++.+...+..++.. ..++.++.-+..-|.+..
T Consensus 244 ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 244 LLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 888888888877642 234444444555555543
No 204
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=36.80 E-value=34 Score=33.79 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhhhhhhcCCCCHHHHHHHHHHHHhhhChHHHhhcCCCCCCchHHHHHHHHHHHH
Q 000834 890 DLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVK 954 (1263)
Q Consensus 890 eLv~KCLwK~~K~l~~~~~~i~~~~lL~~ih~Fl~~~p~~~~r~r~~~~D~PlRTvKTiL~~lvk 954 (1263)
.-||+|||+... +. ..+||+-|..- .+...-||+|+|..|++
T Consensus 6 ~~IM~~lW~~~~-----~t-------~~eI~~~l~~~-----------~~~~~sTv~t~L~rL~~ 47 (115)
T PF03965_consen 6 LEIMEILWESGE-----AT-------VREIHEALPEE-----------RSWAYSTVQTLLNRLVE 47 (115)
T ss_dssp HHHHHHHHHHSS-----EE-------HHHHHHHHCTT-----------SS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-----CC-------HHHHHHHHHhc-----------cccchhHHHHHHHHHHh
Confidence 469999999633 11 55667666532 23445699999999998
No 205
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=36.73 E-value=7.9e+02 Score=29.19 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=63.1
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCC-chhhhHHHHHhhh
Q 000834 197 DNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DAAHLLKPASIAM 271 (1263)
Q Consensus 197 DkK~~VR~aa~~aL~a~~~~~~l----~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~-~~~~ll~pl~~~L 271 (1263)
|+-..+|..+-..+-.++..+++ ..=++.+-..+.+-|.....+.+++.++.+.+....... ..+.++.-+-.--
T Consensus 117 d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt 196 (378)
T KOG2753|consen 117 DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYT 196 (378)
T ss_pred CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhc
Confidence 44445888888888888776643 122334555565555566788899999999998776422 2233333344444
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 000834 272 TDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 272 ~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
+|-....|+.|.+|+.+..+-
T Consensus 197 ~dnas~AredA~rcV~~av~d 217 (378)
T KOG2753|consen 197 EDNASEAREDAMRCVVEAVKD 217 (378)
T ss_pred ccchhHHHHHHHHHHHHHHcC
Confidence 666788999999999887754
No 206
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.17 E-value=1.1e+03 Score=30.76 Aligned_cols=96 Identities=17% Similarity=0.308 Sum_probs=57.8
Q ss_pred cHHHHHHhhccCChHhHHHHHHHH-------HHHHHhhcccccCccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCH
Q 000834 542 TLPYILEGLRSKNNRTRIECVDLV-------GFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 614 (1263)
Q Consensus 542 v~~~ll~glksKN~rvR~ecL~~L-------~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~ 614 (1263)
++.|+-.-++.++. .+ +|++-| -.++.+||..+.+....+..|+.++.+.|++.=.-=...+.++|==+..
T Consensus 545 v~~Yl~~l~~kr~~-~~-~~~~~i~~d~~~~~~~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~ 622 (667)
T KOG2286|consen 545 VIEYLRALSKKRAS-IQ-ELIEKIKSDAETLYHFFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPK 622 (667)
T ss_pred HHHHHHHHHhhhhh-HH-HHHHHHHhhHHHHHHHHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcH
Confidence 44444433333333 44 666554 4556777754433445568889999888877544444455554444444
Q ss_pred H-HHHHh---cCCCHHHHHHHHHHHHHHH
Q 000834 615 D-IWRYV---GKLTDAQKSMLDDRFKWKV 639 (1263)
Q Consensus 615 ~-l~~~l---~~L~~~~~~~Leer~kr~~ 639 (1263)
+ +.+.| ++++..+++.|-++++..-
T Consensus 623 ~~l~~il~~R~dls~~~~k~i~~~~~~~~ 651 (667)
T KOG2286|consen 623 DHLEAILKIRGDLSRSEKKKIVDILKESM 651 (667)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4 44444 7999999998888887543
No 207
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.02 E-value=1.3e+03 Score=31.01 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=100.3
Q ss_pred HHHHhcCCC-ChhHHHHHHHHHHHHHHHhcc-CCCCCCchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhh
Q 000834 107 TLVKSLESP-DWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS 183 (1263)
Q Consensus 107 ~ll~~l~dk-~WK~RkEaLe~L~~il~~a~~-~i~p~~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~ 183 (1263)
.++..+... +=-.-.|||.++.+.|.=.|. .+..--+..++.+|.+.+. ..|.-++..|+.++..|+..+-..+.--
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 455566544 555567777777776641111 1221124778899999886 7899999999999999999998776655
Q ss_pred hh-chHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhc--------CchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Q 000834 184 SK-GVLSDILKCLGD-NKKHMRECTLTVLDAWLAAV--------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 253 (1263)
Q Consensus 184 ~~-~llp~lL~kl~D-kK~~VR~aa~~aL~a~~~~~--------~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~ 253 (1263)
+. ..+|.+++||-. .=--|-+.+.+||..+-..- ++..++.+| .++. --++..+|...+.+-..
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFFS-----i~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFFS-----IHAQRVALAIAANCCKS 324 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHhc
Confidence 54 478888888743 22245666666666554311 233333333 3332 11223334444444444
Q ss_pred CCC-CCchhhhHHH-HHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 254 LSG-FPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 254 ~~~-~~~~~~ll~p-l~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
+++ .....-...| ++..|..-+..+=+.+.-|+..+.
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 443 2233223334 555664333334455555555544
No 208
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=7.6e+02 Score=29.47 Aligned_cols=38 Identities=13% Similarity=0.335 Sum_probs=31.4
Q ss_pred HHHHhhhcC-CCHHHHHHHHHHHHHHHHhcChhhhhhhh
Q 000834 265 KPASIAMTD-KSSDVRKAAEACIVEILRAGGQETIEKNL 302 (1263)
Q Consensus 265 ~pl~~~L~D-~~~eVR~aA~~~L~~l~~~vG~~~i~~~l 302 (1263)
..++.|+.| ....+|..+.+|+..+-...|.|.+...+
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~I 324 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTI 324 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 457889999 45689999999999999999998776653
No 209
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=34.14 E-value=1.4e+02 Score=31.89 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=52.4
Q ss_pred ChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCC
Q 000834 236 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 306 (1263)
Q Consensus 236 ~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~ 306 (1263)
+-.+|+.++.+|...+......-+...+...+..+|.| ..|||--+...+..++.... ..+...++.|-
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p-~~v~~~Ld~l~ 108 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP-EEVLQRLDSLV 108 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H-HHHHHCCTTTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 35699999999999998776556777888889999999 99999999999999976654 44555555443
No 210
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=33.82 E-value=7.4e+02 Score=29.43 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=68.4
Q ss_pred HHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhc-----cCC
Q 000834 480 KVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLR-----SKN 554 (1263)
Q Consensus 480 k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glk-----sKN 554 (1263)
++.+++..++..+..+.+..+..-.-.++..|+.-.-... .+|-.+---+-.++. .-+++.+|..+++ -|+
T Consensus 81 ~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~-~aR~~Vy~~lv~la~---~~~~~~~i~~~lk~~~~~lke 156 (378)
T KOG2753|consen 81 KVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPT-PARYQVYMSLVTLAA---SCKLIEYIVPNLKQLDDWLKE 156 (378)
T ss_pred HhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCc-hHHHHHHHHHHHHHh---hcceeeeecccHHHHHHHHHh
Confidence 4455555555555555544432222233333333332322 266554433333433 2345555554432 133
Q ss_pred hHh----HHHHHHHHHHHHHhhcccccCccchH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHH--HHHHhcCCCHH
Q 000834 555 NRT----RIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGED--IWRYVGKLTDA 626 (1263)
Q Consensus 555 ~rv----R~ecL~~L~~lI~~~G~~v~~~~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~--l~~~l~~L~~~ 626 (1263)
|.+ ..+-+-.+...+..+.- +....|.+ ..++...+|.-..-|..|..|+.++.+ .+. .+.++-+|+|-
T Consensus 157 w~~~vedqrel~r~v~~al~~~k~-~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~--dP~~F~fD~Ll~L~pV 232 (378)
T KOG2753|consen 157 WNISVEDQRELLRAVHKALKDNKS-VDESSKVMTELLGTYTEDNASEAREDAMRCVVEAVK--DPKIFLFDHLLTLPPV 232 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcch-hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHc--CCceeccchhccCchH
Confidence 332 44555666666665542 21233444 444555565558889999999987632 333 33345555554
No 211
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.74 E-value=2.2e+02 Score=35.47 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=42.2
Q ss_pred hhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHH
Q 000834 421 FREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 490 (1263)
Q Consensus 421 ~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~ 490 (1263)
+.+.....|...||-.=++=++.|..--... --.+|.+.+|+...|..|...+|.+|..++.
T Consensus 6 IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~--------~eAvralkKRi~~k~s~vq~lALtlLE~cvk 67 (470)
T KOG1087|consen 6 IDKATSESLAEPDWALNLEICDLINSTEGGP--------KEAVRALKKRLNSKNSKVQLLALTLLETCVK 67 (470)
T ss_pred HHHhhcccccCccHHHHHHHHHHHhcCccCc--------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 3444556788899988777666654332221 1356778889999999999999986655444
No 212
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=33.09 E-value=3.7e+02 Score=31.69 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=75.4
Q ss_pred HHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHH
Q 000834 486 PELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 565 (1263)
Q Consensus 486 ~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L 565 (1263)
..++.-........-+.|+-.++..++.|+|+.. -+.+..++..+. ...++++.+.+ ..-|..|.+...+|
T Consensus 74 ~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---~~~v~~I~~~vf-----~~Tl~MI~~d~-~~yPe~r~~ff~LL 144 (319)
T PF08767_consen 74 DAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---QPQVPQILEAVF-----ECTLPMINKDF-EEYPEHRVNFFKLL 144 (319)
T ss_dssp HHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---CCCHHHHHHHHH-----HHHHHHHSSTS-SSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---hhhHHHHHHHHH-----HHHHHHHHhhh-hhChHHHHHHHHHH
Confidence 3344445556667778889999999999998842 112222322211 12233433332 45799999999999
Q ss_pred HHHHHhhcccccC-c---cchH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHCH
Q 000834 566 GFLIDHHGAEISG-Q---LKSL-QIVASLTAERDGEIRKAALNTLATGYKILGE 614 (1263)
Q Consensus 566 ~~lI~~~G~~v~~-~---~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~ 614 (1263)
..+++.+--.... + .+.+ ..|.-.+.+.+.+|-..+++++..+...+..
T Consensus 145 ~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 145 RAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9888765322221 2 2233 6777778899999999999999988666544
No 213
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=33.02 E-value=7.4e+02 Score=29.52 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=62.5
Q ss_pred HHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcC--c-hHHHHHHHHHhHHHHHHHHhhcCCCcch
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK--S-NTTCLLKVLEFLPELFDTLRDEGYSLTE 501 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~D--t-N~qV~~k~Le~L~~l~~~L~~~~~~lsd 501 (1263)
+.+.+.+.+-..|.+|++.|... ..+...+=-+++|++-.+.- . |..++...++++.+|+ ...+-+-+
T Consensus 183 It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl----~N~~l~le 253 (343)
T cd08050 183 ITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL----DNPNLHLE 253 (343)
T ss_pred HHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh----cCCCCchH
Confidence 44555667888999999987533 22333444566666543221 1 6666666666544443 33333334
Q ss_pred HHHHhHHHHHH----HH-hCC-----ChHHHHHHHHHHHHHHHHhcCCc
Q 000834 502 SEAAVFLPCLV----EK-SGH-----NIEKVREKMRELTKQIVNFYSAT 540 (1263)
Q Consensus 502 ~ea~~~lP~Lv----eK-lGD-----~K~~vR~~~~~il~~l~~v~~~s 540 (1263)
.-...++|.++ .| +|. .--.+|+-+-.++..+|.-|+.+
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 44566666664 33 343 22478888888888888877654
No 214
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=32.69 E-value=7.6e+02 Score=34.28 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCC-CcchHHHHhHHHHHHHHhC
Q 000834 438 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY-SLTESEAAVFLPCLVEKSG 516 (1263)
Q Consensus 438 l~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~-~lsd~ea~~~lP~LveKlG 516 (1263)
.-|-..|..++..| .| ++.|+.-+=+..+..|...++..|..++ .+.++ .+.. ..++...+-|+|
T Consensus 488 ~lgr~AL~nLL~~N-------~d-Ll~~~IdrCYss~~~va~gYF~vlaev~---~~~~~~~~~~---~~LL~L~Lfklg 553 (1120)
T PF14228_consen 488 SLGRRALKNLLEHN-------PD-LLDWVIDRCYSSSPRVAEGYFTVLAEVF---SEREYPPCPF---WELLNLVLFKLG 553 (1120)
T ss_pred HHHHHHHHHHHHhh-------HH-HHHHHHHHhcCCChhHHHHHHHHHHHHH---HcCCCCCCCH---HHhHHHHHHhhc
Confidence 34455555555544 33 5677765445567888888887665544 34443 3332 246777788999
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 000834 517 HNIEKVREKMRELTKQIVN 535 (1263)
Q Consensus 517 D~K~~vR~~~~~il~~l~~ 535 (1263)
|.+..||+.+-.+|+.+..
T Consensus 554 ~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 554 DESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 9999999999999987764
No 215
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=32.24 E-value=1.3e+02 Score=33.05 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=53.2
Q ss_pred HhhccCChHhHHHHHHHHHHHHHhhcccccC-ccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHH
Q 000834 548 EGLRSKNNRTRIECVDLVGFLIDHHGAEISG-QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 548 ~glksKN~rvR~ecL~~L~~lI~~~G~~v~~-~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~ 615 (1263)
+.+..+-...-.+++..++.++++.|-.... -...|+.++++-.+.+-..|+.+-+|+|.+.+.+|++
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 3455566666778899999999999954221 1234577788888888999999999999999999998
No 216
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=31.53 E-value=9.4e+02 Score=28.50 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=93.4
Q ss_pred hhhHHHHhhhcCccHHHHHHHHHHHHHhccccchhhHHHHH-----HHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhh
Q 000834 420 YFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLD-----ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRD 494 (1263)
Q Consensus 420 ~~~~~l~~~Lfs~dwk~Rl~ale~L~~~l~~~~~~~~~~lD-----lllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~ 494 (1263)
.+.+++...|.+.|---..-++..+-.+++..+...+.... -+++.+.-.+...|-.|...+.+.+..+-.+-..
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 34567777888877777777777777777665433222111 2344444444667778888777766554321111
Q ss_pred cCC----CcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCC-------cccHHHHHHhhc-cCChHhHHHHH
Q 000834 495 EGY----SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA-------TKTLPYILEGLR-SKNNRTRIECV 562 (1263)
Q Consensus 495 ~~~----~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~-------skv~~~ll~glk-sKN~rvR~ecL 562 (1263)
.+. .+.|. .-+-.|..|+.| .+|-.+-+++-.+..+.+. +-++..+...++ .+..-+|..|+
T Consensus 162 leaiFeSellDd---lhlrnlaakcnd---iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianci 235 (524)
T KOG4413|consen 162 LEAIFESELLDD---LHLRNLAAKCND---IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCI 235 (524)
T ss_pred HHHhcccccCCh---HHHhHHHhhhhh---HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence 000 01110 111223345544 4566666666665554433 224444444454 48888999999
Q ss_pred HHHHHHHH-hhcccccCccchHHHHHHhhc--CCCHH
Q 000834 563 DLVGFLID-HHGAEISGQLKSLQIVASLTA--ERDGE 596 (1263)
Q Consensus 563 ~~L~~lI~-~~G~~v~~~~k~L~~Iak~i~--D~d~~ 596 (1263)
+....+.+ +||-....+...+..|...|. |+||-
T Consensus 236 ElvteLaeteHgreflaQeglIdlicnIIsGadsdPf 272 (524)
T KOG4413|consen 236 ELVTELAETEHGREFLAQEGLIDLICNIISGADSDPF 272 (524)
T ss_pred HHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcH
Confidence 99998876 456443323333466666664 45543
No 217
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=31.24 E-value=1e+03 Score=28.79 Aligned_cols=171 Identities=20% Similarity=0.164 Sum_probs=98.5
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCCCCCc-hhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHH
Q 000834 115 PDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 193 (1263)
Q Consensus 115 k~WK~RkEaLe~L~~il~~a~~~i~p~~~-~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~ 193 (1263)
++=-||-+||.=+.++++-. . .+..+ ..+++++-....+.+-+....|++++.+|+-. .++.--+... +..+++
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~--~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG-~~~L~~ 154 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-K--GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGG-IRVLLR 154 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-C--CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCC-HHHHHH
Confidence 45678999999999999731 1 11112 45777777777788888999999988887654 1222222222 355666
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhhc-----cCChhH-HHH-HHHHHHHHHccCCCC---
Q 000834 194 CLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAEG-RKD-LFDWLSKQLTGLSGF--- 257 (1263)
Q Consensus 194 kl~DkK~~VR~aa~~aL~a~~~~~~------l~~ll~~l~~~L~~k-----k~~p~v-R~e-~L~~L~~~l~~~~~~--- 257 (1263)
.+.|.-..+-+++..++-.++++-. .+--++.+...+.+. +.+... |-. .-.-+...+.+.+..
T Consensus 155 ~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l 234 (371)
T PF14664_consen 155 ALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL 234 (371)
T ss_pred HHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee
Confidence 6666444477777777777765321 122234444444322 111211 111 122344555555431
Q ss_pred -CchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 258 -PDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 258 -~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
.+...-++-++.+|.-++.++|+.-.+.+-.+.
T Consensus 235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 122255677888888889999987766655544
No 218
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=30.37 E-value=2.4e+02 Score=28.21 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=66.8
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhh---ccccHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 000834 109 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSK 185 (1263)
Q Consensus 109 l~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL---~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~ 185 (1263)
.+.-++..|-.-..-+.+|.... ..+.++..++..|.+|| ..++..++..||.+|.-|..--...|-..++
T Consensus 9 ~eAT~~d~~gp~~~~l~eIa~~t------~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~ 82 (125)
T PF01417_consen 9 REATSNDPWGPPGKLLAEIAQLT------YNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELR 82 (125)
T ss_dssp HHHTSSSSSS--HHHHHHHHHHT------TSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHcCCCCCCcCHHHHHHHHHHH------hccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34456678987777777665543 22235889999999999 7999999999999999999987777766555
Q ss_pred chHHHHH--HHh-------CCCcHHHHHHHHHHHHHHH
Q 000834 186 GVLSDIL--KCL-------GDNKKHMRECTLTVLDAWL 214 (1263)
Q Consensus 186 ~llp~lL--~kl-------~DkK~~VR~aa~~aL~a~~ 214 (1263)
.-...|- ..| .|....||+.|.+.++.+.
T Consensus 83 ~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 83 DHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 3333222 223 1233458888888777653
No 219
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=30.08 E-value=2.3e+02 Score=29.70 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHHHHHHHHhcCc-hhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Q 000834 157 SNKNLVMATLITLGAVASAMGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 235 (1263)
Q Consensus 157 sN~~V~~~AL~~l~~LA~alg~-~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~ 235 (1263)
-+.........+|.......++ -++.|...+.-..-+.-+|.+..+++. ++..+++... .. .....
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~---~iq~~~~~a~------~~----~~~~~ 92 (152)
T PF12422_consen 26 LSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFRAWKKASKDKLEEIEEV---CIQDLMEAAI------HL----EYLPL 92 (152)
T ss_pred hhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHH---HHHHHHHHhH------Hh----cchHh
Confidence 4555555656666665544444 244455444444433334444444443 3333333220 00 11111
Q ss_pred ChhHHHHHHHHHHHHHccCCCCCchhhhHHH-HHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 236 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 236 ~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
.+..|.-+..|-.+. ...+-..-+..+..| +...|.-+|..||..|..++..++
T Consensus 93 ~~~~R~~L~~f~~~k-~~~~v~~mL~rl~~PiL~r~L~~~n~~Vr~na~~l~~~aF 147 (152)
T PF12422_consen 93 HSKFREVLLSFHSQK-KRKGVDEMLLRLYEPILWRALQAANAKVRSNAAALFLDAF 147 (152)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHcCCCcchhccHHHHHHHHc
Confidence 244555554443333 111111123566778 577899999999999998877654
No 220
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=30.05 E-value=1.8e+02 Score=30.71 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 000834 165 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 215 (1263)
Q Consensus 165 AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~ 215 (1263)
+++++-.+.+.+|..+-+|+..++|.++..+.......|+....-|..++.
T Consensus 107 vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 107 VVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345555666789999999999999999999887777888887776666554
No 221
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.82 E-value=1.5e+02 Score=37.19 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=90.1
Q ss_pred HHhcCCC--ChhHHHHHHHHH---HHHHHHhccCCCCCCch-hHHHHHHhhhc--------cccHHHHHHHHHHHHHHHH
Q 000834 109 VKSLESP--DWKVRLESIEAV---NKILEEANKRIQPAGTG-ELFGGLRGRLY--------DSNKNLVMATLITLGAVAS 174 (1263)
Q Consensus 109 l~~l~dk--~WK~RkEaLe~L---~~il~~a~~~i~p~~~~-eL~~aLk~rL~--------DsN~~V~~~AL~~l~~LA~ 174 (1263)
...+.+. +-|.|..+++-+ ...+...++.+-.. ++ -|...+-+.+. ..+..+...+-++||.|++
T Consensus 325 ~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~-l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~ 403 (501)
T PF13001_consen 325 FDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKL-LRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAK 403 (501)
T ss_pred hccccCCccccccchhcchhhhcchHHhhhcCHHHHHH-HHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHc
Confidence 3455555 678888888877 55554321111110 21 12222333341 3467788888999999999
Q ss_pred hcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--h---hhHHHHHHHHhhc---cCChhHHHHHHHH
Q 000834 175 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--D---KMVPYVTTALTDA---KLGAEGRKDLFDW 246 (1263)
Q Consensus 175 alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l--~---~ll~~l~~~L~~k---k~~p~vR~e~L~~ 246 (1263)
..-.-|..- -.++--+++.|.+.-+.||-++.+||..|..+... + .........+... +....+|-.+++|
T Consensus 404 ~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~ 482 (501)
T PF13001_consen 404 RAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKY 482 (501)
T ss_pred cCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 987766332 45667777888888999999999999999987631 1 1112222222211 1245699999999
Q ss_pred HHHHHccC
Q 000834 247 LSKQLTGL 254 (1263)
Q Consensus 247 L~~~l~~~ 254 (1263)
..++|+-.
T Consensus 483 an~~fpf~ 490 (501)
T PF13001_consen 483 ANACFPFS 490 (501)
T ss_pred HHHhCCcc
Confidence 99998744
No 222
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.63 E-value=6.3e+02 Score=29.83 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHHHHHHHHHHHHH-hhccc---ccC-ccchHHHHHHhhcCC---
Q 000834 522 VREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID-HHGAE---ISG-QLKSLQIVASLTAER--- 593 (1263)
Q Consensus 522 vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ecL~~L~~lI~-~~G~~---v~~-~~k~L~~Iak~i~D~--- 593 (1263)
++.....+++.+..-+ +..+..++.++.+.....||..|..++. .-|.- +.. ..-.++.+.+++.-+
T Consensus 42 ~~~~g~~l~~~iL~~~-----~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~ 116 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH-----LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKE 116 (330)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccccc
Confidence 4444455555555433 6677788877777777899999999987 33321 111 000113333333110
Q ss_pred --C--------HHHHHHHHHHHHHHHHHHCHHHH
Q 000834 594 --D--------GEIRKAALNTLATGYKILGEDIW 617 (1263)
Q Consensus 594 --d--------~~VR~AAl~~l~~ly~~~G~~l~ 617 (1263)
+ +.||.+.+..+-.+.......+.
T Consensus 117 ~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~ 150 (330)
T PF11707_consen 117 KEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELK 150 (330)
T ss_pred ccccccccccCcCHHHHHHHHHHHHHccCCHHHH
Confidence 1 39999999998876555444433
No 223
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.48 E-value=1.3e+02 Score=39.22 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=53.8
Q ss_pred cHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccC--ccchHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHCHHHHH
Q 000834 542 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG--QLKSLQIVASLT-AERDGEIRKAALNTLATGYKILGEDIWR 618 (1263)
Q Consensus 542 v~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~--~~k~L~~Iak~i-~D~d~~VR~AAl~~l~~ly~~~G~~l~~ 618 (1263)
+|..+-+.+. ++..|..+|..|+.+|...+..+-. ....++.+.+|+ -|.+..|=.+|+.||..+.=++...+..
T Consensus 71 ~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 71 LFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 4445545553 5678999999999999887754321 233456676655 5999999999999999886666554444
Q ss_pred H
Q 000834 619 Y 619 (1263)
Q Consensus 619 ~ 619 (1263)
|
T Consensus 149 ~ 149 (668)
T PF04388_consen 149 H 149 (668)
T ss_pred H
Confidence 3
No 224
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=28.99 E-value=5.6e+02 Score=31.64 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcC-chhhhhhhchHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHhhc
Q 000834 164 ATLITLGAVASAMG-PAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALTDA 233 (1263)
Q Consensus 164 ~AL~~l~~LA~alg-~~f~~~~~~llp~lL~-kl~DkK~~VR~aa~~aL~a~~~~~~--------l~~ll~~l~~~L~~k 233 (1263)
-++++++.+..... .++-.....++|+++. .+-+.+.+| -+....|.++++..+ +..++..+-.-+.+|
T Consensus 136 YvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 136 YVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp HHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 34566666666544 4555556667777775 455666666 677778888876542 345555444444554
Q ss_pred cCChhHHHHHHHHHHHHHccCCCCCchhhhHHH----HHhhhc-CCCHHHHHHHHHHHHHHHHhcChhhhhhhhhcCChh
Q 000834 234 KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP----ASIAMT-DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 308 (1263)
Q Consensus 234 k~~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~p----l~~~L~-D~~~eVR~aA~~~L~~l~~~vG~~~i~~~l~~L~~~ 308 (1263)
. .-...+..|...+..++. ..+.++++. ++..|+ -+.....+.=...+..++...|.+.+...++.+++.
T Consensus 215 ~----~D~~gF~LL~~iv~~~p~-~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~g 289 (435)
T PF03378_consen 215 A----NDHYGFDLLESIVENLPP-EALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPG 289 (435)
T ss_dssp T----CHHHHHHHHHHHHHHS-H-HHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTT
T ss_pred C----cchHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCC
Confidence 2 123344445555555542 123344444 455554 333333333333444444555888899999999875
Q ss_pred HHHHHHHHh
Q 000834 309 ALALILERI 317 (1263)
Q Consensus 309 ~~~~ilek~ 317 (1263)
--..+++++
T Consensus 290 lF~~il~~v 298 (435)
T PF03378_consen 290 LFGMILEKV 298 (435)
T ss_dssp HHHHHHHHT
T ss_pred cHHHHHHHH
Confidence 555566654
No 225
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=28.94 E-value=5.3e+02 Score=29.71 Aligned_cols=138 Identities=19% Similarity=0.318 Sum_probs=93.3
Q ss_pred CCCccccccCC---CHHHHHhcCCCChhHHHHHHHHHHHHHHHhcc-C---CCCCCchhHH-HHHHhhhc--------cc
Q 000834 94 GLPREDISGKF---TPTLVKSLESPDWKVRLESIEAVNKILEEANK-R---IQPAGTGELF-GGLRGRLY--------DS 157 (1263)
Q Consensus 94 llprvDI~~kl---~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~-~---i~p~~~~eL~-~aLk~rL~--------Ds 157 (1263)
.+.+-+|+..+ .+-++.-+.|..=..|..|+.-|..++..... . +.-.++++++ ++|...+. |.
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 45555555443 35678888888888899999999999974211 2 2333566655 68888887 77
Q ss_pred cHHHHHHHHHHHHHHHHhcC-----chhhhhhhchHHHHHHHhC-CCc---HHHHHHHHHHHHHHHHhcCc------hhh
Q 000834 158 NKNLVMATLITLGAVASAMG-----PAVEKSSKGVLSDILKCLG-DNK---KHMRECTLTVLDAWLAAVHL------DKM 222 (1263)
Q Consensus 158 N~~V~~~AL~~l~~LA~alg-----~~f~~~~~~llp~lL~kl~-DkK---~~VR~aa~~aL~a~~~~~~l------~~l 222 (1263)
-..+...+..|+-.|+..+- .....+.+.+.-.||..+- ..+ ..++......+..++...|. ..+
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~ri 266 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRI 266 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 77888889999999887641 2234455566666776543 343 88999999999988888764 344
Q ss_pred HHHHHHHHh
Q 000834 223 VPYVTTALT 231 (1263)
Q Consensus 223 l~~l~~~L~ 231 (1263)
++.+.+.|.
T Consensus 267 i~~l~~~l~ 275 (282)
T PF10521_consen 267 IPVLSQILE 275 (282)
T ss_pred HHHHHHHhc
Confidence 444444443
No 226
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=28.89 E-value=9.5e+02 Score=29.01 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=76.1
Q ss_pred HhHHHHHHH-HhCCChHHHHHHHHHHHHHHHHhc------CCcccHHHHHHhh--ccCChHhHHHHHHHHHHHHHhhccc
Q 000834 505 AVFLPCLVE-KSGHNIEKVREKMRELTKQIVNFY------SATKTLPYILEGL--RSKNNRTRIECVDLVGFLIDHHGAE 575 (1263)
Q Consensus 505 ~~~lP~Lve-KlGD~K~~vR~~~~~il~~l~~v~------~~skv~~~ll~gl--ksKN~rvR~ecL~~L~~lI~~~G~~ 575 (1263)
..+++.+.- -+.|+ ..||..+-.+++.+..-. -.-++--++...+ .+|+--.|+++|..+-.+++-.+ .
T Consensus 24 ~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~ 101 (371)
T PF14664_consen 24 SFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-G 101 (371)
T ss_pred HHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-C
Confidence 334444442 45666 577777776776544211 1111222344444 36788889999999988887543 1
Q ss_pred ccCccchH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHHHHHHhcCCCHHHHHHHH
Q 000834 576 ISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLD 632 (1263)
Q Consensus 576 v~~~~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~l~~~l~~L~~~~~~~Le 632 (1263)
+..-+..+ ..|..+.++.+-..|.+|+.++.++.. .-+++...-|.+..=....+|
T Consensus 102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l-~~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELAL-LNPELVAECGGIRVLLRALID 158 (371)
T ss_pred cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh-hCHHHHHHcCCHHHHHHHHHh
Confidence 11123444 888888889999999999999999744 445555555555444444444
No 227
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=28.48 E-value=2.5e+02 Score=33.10 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhhccCChhHHHHHHHHHHHHHc
Q 000834 196 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 252 (1263)
Q Consensus 196 ~DkK~~VR~aa~~aL~a~~~~~~---l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~ 252 (1263)
+|.+.....+...++..|....+ .+.+++.+..+|.+|+ +.+|..-+.++...+.
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk--~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKK--PPVRRAWLLCLGEALW 90 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHh
Confidence 46777777777777777776552 3567777777777774 5577777777766665
No 228
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.23 E-value=4e+02 Score=31.86 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=106.8
Q ss_pred CCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCC-CchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhh
Q 000834 103 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 181 (1263)
Q Consensus 103 kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~-~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~ 181 (1263)
++-+.+.+-+.+.+=|.+..|--.|..+..+- ..+.+- .-|.|+ .|-+.+-|.-...+.....||..|+-.=+.+.-
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP-~lv~Llqs~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLP-LLVELLQSPMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCch-HHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence 34467888888889999998888888776531 111110 112322 233334566677777778888877765444422
Q ss_pred hhhhchHHHHHHH--hCCCcHHHHHHHHHHHHHHHHhc--Cch-----hhHHHHHHHHhhccCChhHHHHHHHHHHHHHc
Q 000834 182 KSSKGVLSDILKC--LGDNKKHMRECTLTVLDAWLAAV--HLD-----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 252 (1263)
Q Consensus 182 ~~~~~llp~lL~k--l~DkK~~VR~aa~~aL~a~~~~~--~l~-----~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~ 252 (1263)
-.=..|+.+++.- .||+-. +.=+|..+|..++.+. +.. ..++.+.+-+.+. ...+|.+.-..++..--
T Consensus 329 I~dagfl~pLVrlL~~~dnEe-iqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~--pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDNEE-IQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG--PVSVQSEISACIAQLAL 405 (550)
T ss_pred eecccchhHHHHHHhcCCchh-hhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC--ChhHHHHHHHHHHHHHh
Confidence 2222445555543 456543 5556777777666532 111 2234444444443 23566666555543321
Q ss_pred cCCCCCc--hhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 000834 253 GLSGFPD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 253 ~~~~~~~--~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~vG 294 (1263)
.-..... ...++..++..+.|-+.|||..|.++|..+...+.
T Consensus 406 ~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 406 NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 1111111 12344557788899999999999999998876544
No 229
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=28.22 E-value=9.8e+02 Score=29.71 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=49.3
Q ss_pred CccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhh-----------------------cCchHHHHHHHHHhHHH
Q 000834 431 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQF-----------------------CKSNTTCLLKVLEFLPE 487 (1263)
Q Consensus 431 s~dwk~Rl~ale~L~~~l~~~~~~~~~~lDlllk~l~lrl-----------------------~DtN~qV~~k~Le~L~~ 487 (1263)
..|+..|++|+..|.+.=.....-..+...++.+|+..-+ .+.+.+.+...|+++..
T Consensus 81 ~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 81 DDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred chhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 3466788999988875421111111234567888886444 01234455566666554
Q ss_pred HHHHHhhcCCCcchHHHHhHHHHHHHHh
Q 000834 488 LFDTLRDEGYSLTESEAAVFLPCLVEKS 515 (1263)
Q Consensus 488 l~~~L~~~~~~lsd~ea~~~lP~LveKl 515 (1263)
++ +-+...+.+.++..++..++.-+
T Consensus 161 vi---Kfn~~~l~e~~i~~lv~~i~~iC 185 (464)
T PF11864_consen 161 VI---KFNFNYLDEDEISSLVDQICTIC 185 (464)
T ss_pred HH---hcCCCCCCHHHHHHHHHHHHHHH
Confidence 44 44556788888888888887764
No 230
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=28.14 E-value=7.6e+02 Score=26.97 Aligned_cols=98 Identities=26% Similarity=0.383 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHhhcCchHHHHHHHHHhHHHH-HHH-HhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHH
Q 000834 454 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL-FDT-LRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 531 (1263)
Q Consensus 454 ~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l-~~~-L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~ 531 (1263)
...+.+|-+.+++- . ...|-.-..+.+.-+-.+ +.. +--.+.+|++.|.... +.+|++++.+..
T Consensus 34 tsselLD~ly~l~K-~-~t~~kkeA~ki~KniIKi~vKigvl~rn~qf~~eEl~~~------------~~fr~k~~~~am 99 (186)
T PF05527_consen 34 TSSELLDELYRLLK-E-YTGNKKEAEKIIKNIIKIVVKIGVLYRNNQFSDEELALA------------EKFRKKFHQLAM 99 (186)
T ss_dssp HHHHHHHHHHHHHH-H-HHS-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHH------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-H-HhcCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHH------------HHHHHHHHHHHH
Confidence 34456777777753 1 123444444444322222 211 1224557888775332 357888888888
Q ss_pred HHHHhcCCcccHH--HHHHhhccCChHhHHHHHHHHHHHHHhhc
Q 000834 532 QIVNFYSATKTLP--YILEGLRSKNNRTRIECVDLVGFLIDHHG 573 (1263)
Q Consensus 532 ~l~~v~~~skv~~--~ll~glksKN~rvR~ecL~~L~~lI~~~G 573 (1263)
.++..|-....+. ++...+ .||=+.+..+++.|=
T Consensus 100 t~iSF~eV~fTfD~~~L~~~L--------~ec~~~L~~lv~~HL 135 (186)
T PF05527_consen 100 TAISFYEVDFTFDRNYLSKLL--------KECRDLLHQLVEPHL 135 (186)
T ss_dssp HHHHHTSTTS---HHHHHHHH--------HHHHHHHHHHHTTTS
T ss_pred HHhhhcccchhhhHHHHHHHH--------HHHHHHHHHHHHHhC
Confidence 8887776665555 343433 688888888887665
No 231
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.04 E-value=3.6e+02 Score=28.36 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHHHhccccchhhH------HHH----HHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcch
Q 000834 432 TDFKKQVDGLEMLQKALPSIRKDII------EVL----DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTE 501 (1263)
Q Consensus 432 ~dwk~Rl~ale~L~~~l~~~~~~~~------~~l----Dlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd 501 (1263)
.+.+.|.=|++.|...++..+.... ... +-++..+..-....++++...++.++..++..+.. .-+
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~----~Lk 109 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRS----HLK 109 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4567778888888888877654333 111 22333333333345588888999887777765543 345
Q ss_pred HHHHhHHHHHHHHh
Q 000834 502 SEAAVFLPCLVEKS 515 (1263)
Q Consensus 502 ~ea~~~lP~LveKl 515 (1263)
.|...|++.++..+
T Consensus 110 ~ele~~l~~i~~~i 123 (168)
T PF12783_consen 110 LELEVFLSHIILRI 123 (168)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777777754
No 232
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=27.86 E-value=4.4e+02 Score=31.76 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=62.9
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHH--hccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcC--chhhhhhh
Q 000834 110 KSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVEKSSK 185 (1263)
Q Consensus 110 ~~l~dk~WK~RkEaLe~L~~il~~--a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg--~~f~~~~~ 185 (1263)
....++.-|+|.++|+.+.-++.. ...+|.++ .-++..++-+.++....--...+-..++.++--+| ..-+-..+
T Consensus 67 de~~dk~AktR~~~le~i~lalt~r~l~~fi~e~-~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~ 145 (427)
T KOG2842|consen 67 DEVKDKSAKTRQEALEKIYLALTSRHLPEFILEN-RATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTK 145 (427)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhh-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHh
Confidence 445688999999999998887762 22466665 67788888888864444444444446666666555 55566777
Q ss_pred chHHHHHHHhCCCcHHHHH
Q 000834 186 GVLSDILKCLGDNKKHMRE 204 (1263)
Q Consensus 186 ~llp~lL~kl~DkK~~VR~ 204 (1263)
...|.+...+.|.-+.|.-
T Consensus 146 t~~~~~~li~~d~s~sv~~ 164 (427)
T KOG2842|consen 146 TLGPFLALILDDESASIKA 164 (427)
T ss_pred ccchHHHHHhhccccchHH
Confidence 7777777666666655543
No 233
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=27.69 E-value=1.2e+03 Score=28.62 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=38.5
Q ss_pred HHHHHHhhccCC-hHhHHHHHHHHHHHHHhhccc--ccCccchHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000834 543 LPYILEGLRSKN-NRTRIECVDLVGFLIDHHGAE--ISGQLKSLQIVASLTAERDGEIRKAALNTLATG 608 (1263)
Q Consensus 543 ~~~ll~glksKN-~rvR~ecL~~L~~lI~~~G~~--v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l~~l 608 (1263)
+..+..-++++| |..-.-.+.-|+..|+-|.-. +....++=+.|-.++++.|++||-.|+.|+-.+
T Consensus 368 lkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 368 LKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 333444444444 555555555556666555422 111111225678899999999999999886554
No 234
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.31 E-value=99 Score=31.13 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=38.3
Q ss_pred ccHHHHHHhhcc---C-ChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCCCHHHHHHHHHHH
Q 000834 541 KTLPYILEGLRS---K-NNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTL 605 (1263)
Q Consensus 541 kv~~~ll~glks---K-N~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~d~~VR~AAl~~l 605 (1263)
.+++++...+.+ . +......+|+-+...+.............++.+...+ .++.+|.+|..||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 355566555421 1 2667777888887777633322211223457777777 5566799999986
No 235
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.15 E-value=67 Score=24.69 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhChhhHHHHHHHHHHH
Q 000834 10 CINLLVQVTTHFMWNSTSGLVSSLRFL 36 (1263)
Q Consensus 10 ~~~~l~k~~~h~d~~VR~~ai~Ll~~l 36 (1263)
||..|.+++.+.|..|+..|...+..|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 788899999999999999999888765
No 236
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=27.08 E-value=3.8e+02 Score=32.38 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHhHHHHHHHHhhcCCCcchHHHHhHHHHHHH---HhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhH
Q 000834 482 LEFLPELFDTLRDEGYSLTESEAAVFLPCLVE---KSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTR 558 (1263)
Q Consensus 482 Le~L~~l~~~L~~~~~~lsd~ea~~~lP~Lve---KlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR 558 (1263)
|.+|..++..+....+.........++|.+++ +++| -..+|..+.++++.|...+-. ......|
T Consensus 232 L~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e-~~~~k~~a~e~l~~mv~~~~~------------~~~~~~~ 298 (373)
T PF14911_consen 232 LAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNE-EPQVKKLATELLQYMVESCQV------------GSSGEPR 298 (373)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCC-CcchhHHHHHHHHHHHHcccc------------cCcchHH
Confidence 34444455544333334444556777787766 3443 246677777776554443311 3445678
Q ss_pred HHHHHHHHHHHHhhccc
Q 000834 559 IECVDLVGFLIDHHGAE 575 (1263)
Q Consensus 559 ~ecL~~L~~lI~~~G~~ 575 (1263)
++|...+..++++|++.
T Consensus 299 ~~l~s~lrsfvqk~l~~ 315 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLAH 315 (373)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 89999999999999854
No 237
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.56 E-value=1.2e+03 Score=28.00 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=31.7
Q ss_pred hHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHCHH-HHHHh
Q 000834 582 SLQIVASLTAE-RDGEIRKAALNTLATGYKILGED-IWRYV 620 (1263)
Q Consensus 582 ~L~~Iak~i~D-~d~~VR~AAl~~l~~ly~~~G~~-l~~~l 620 (1263)
.|+.+..|++| .+..+|+.+..|+..+..+.|.+ +...+
T Consensus 284 Gl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~I 324 (461)
T KOG4199|consen 284 GLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTI 324 (461)
T ss_pred CHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 45677888888 77899999999999999999986 44443
No 238
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=26.44 E-value=3.6e+02 Score=34.33 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhhccC
Q 000834 158 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKL 235 (1263)
Q Consensus 158 N~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~--l~~ll~~l~~~L~~kk~ 235 (1263)
+.++-..|.+.|..+. +.|-.....-+-.+++-+.|-...||..|+..|-.++.... +..+.+.|..-|...
T Consensus 35 ~~k~K~Laaq~I~kff----k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td-- 108 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFF----KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD-- 108 (556)
T ss_dssp -HHHHHHHHHHHHHHH----CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc--
Confidence 4677778877777655 45777888889999999999999999999999998887642 456666666666543
Q ss_pred ChhHHHHHHHHHHHHHccCCCCCchhhhHHHHHhhhc---CCCHHHHHHHHHHHHHHHHhcChhhh
Q 000834 236 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT---DKSSDVRKAAEACIVEILRAGGQETI 298 (1263)
Q Consensus 236 ~p~vR~e~L~~L~~~l~~~~~~~~~~~ll~pl~~~L~---D~~~eVR~aA~~~L~~l~~~vG~~~i 298 (1263)
.+.....+=+-|...+.. +.+..+..++..+. ..+..||+.+.+.|..-+.-++.+.+
T Consensus 109 d~~E~~~v~~sL~~ll~~-----d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 109 DPVELDAVKNSLMSLLKQ-----DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp -HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred cHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHh
Confidence 243333332333333332 22344444444432 34567999988888766665554433
No 239
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.05 E-value=1.2e+03 Score=29.49 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=27.7
Q ss_pred cCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhc--CCCHHHHHHHHHHHHH
Q 000834 552 SKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTA--ERDGEIRKAALNTLAT 607 (1263)
Q Consensus 552 sKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~--D~d~~VR~AAl~~l~~ 607 (1263)
..+..+|..++.-|..+...+. .+.-+.+-.... +-+++||-||+..+-.
T Consensus 491 ~~~~~iR~~Av~Alr~~a~~~p------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 491 PLSTFIRLAAILALRNLAKRDP------RKVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHhCc------hHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 4456778777777765543322 111122222222 3677888888877654
No 240
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=26.04 E-value=3.3e+02 Score=26.49 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=37.1
Q ss_pred hhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000834 179 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 220 (1263)
Q Consensus 179 ~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~ 220 (1263)
.+.+|...++.-+...+..-.+.||..+...|+.+++.++-.
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 357888999999999999999999999999999999988643
No 241
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.02 E-value=6.1e+02 Score=33.19 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=85.1
Q ss_pred chhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--h
Q 000834 143 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--D 220 (1263)
Q Consensus 143 ~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l--~ 220 (1263)
+++|+..|-- .+..++..+-..+..+...-+.. .++..+++.+-..+.. .+++.++..=.+ .
T Consensus 6 ~~~l~~~l~s----~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t~s~------~~~~il~~~~~P~~K 69 (668)
T PF04388_consen 6 ITELLSLLES----NDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLSTNSQ------RALEILVGVQEPHDK 69 (668)
T ss_pred HHHHHHHhcC----CchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhcCcH------HHHHHHHhcCCccHH
Confidence 5555544422 34444444444444443332211 3466667666555432 233333322223 4
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC---CchhhhHHHHHhhh-cCCCHHHHHHHHHHHHHHHHhcChh
Q 000834 221 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQE 296 (1263)
Q Consensus 221 ~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~---~~~~~ll~pl~~~L-~D~~~eVR~aA~~~L~~l~~~vG~~ 296 (1263)
.++..|...+.. +..|..+|..|...+...++- -.-.+++.-+++|| -|.+.-|=..|.-+|..++-++..
T Consensus 70 ~~~~~l~~~~~~----~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~- 144 (668)
T PF04388_consen 70 HLFDKLNDYFVK----PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS- 144 (668)
T ss_pred HHHHHHHHHHcC----chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc-
Confidence 566666666653 778999999998888766542 12246667788987 799999999999999988877764
Q ss_pred hhhhhhhcC
Q 000834 297 TIEKNLKDI 305 (1263)
Q Consensus 297 ~i~~~l~~L 305 (1263)
.+.+++.+|
T Consensus 145 ~l~~~L~~L 153 (668)
T PF04388_consen 145 SLGPHLPDL 153 (668)
T ss_pred hhhHHHHHH
Confidence 355555544
No 242
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=25.18 E-value=1.8e+02 Score=28.88 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred ccHHHHHHhhc-cCChHhHHHHHHHHHHHHHhhcccccCccchH-HHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000834 541 KTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYK 610 (1263)
Q Consensus 541 kv~~~ll~glk-sKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~ 610 (1263)
+++|++.+|++ ++++-.|..|.-.++.+..+..+... -..++ +.|.+.....+. .+.|+.|+..+|.
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-VLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-HHHHHHHHHHhccccchh--HHHHHHHHHHHHH
No 243
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=25.06 E-value=1.2e+03 Score=27.66 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHH
Q 000834 584 QIVASLTAERDGEIRKAALNTLATG 608 (1263)
Q Consensus 584 ~~Iak~i~D~d~~VR~AAl~~l~~l 608 (1263)
..|-.++++.|+.||=.|+.++-++
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHH
Confidence 3567789999999999998887655
No 244
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.93 E-value=5.7e+02 Score=34.38 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=92.1
Q ss_pred hChhhHHHHHHHHHHHHHHhh--HHHHhhh-ccCCHHHHHHHHHHHhcCCCCCCCCCccccccccccccCCCCCCCCCCc
Q 000834 21 FMWNSTSGLVSSLRFLRLFYF--ADIKGFL-ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR 97 (1263)
Q Consensus 21 ~d~~VR~~ai~Ll~~ly~~iG--~~l~~~l-~dlkp~~l~~Le~efeK~~~~~~p~p~R~~r~~~~~~~~~~~~~dllpr 97 (1263)
+|+++|++|=.-|-++++..| ..|.... +|-=|.-.++.-+=.=|+.- +|.+++.. ..|-.+.+++
T Consensus 16 ~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I------~~~W~~~~-----~~g~~~~I~e 84 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKI------TKSWSSHE-----APGRPFGIPE 84 (1010)
T ss_pred CChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHH------HhcCCccC-----CCCCcCCCCh
Confidence 467999999999999998877 3343433 32222111111111112110 11111110 0010011222
Q ss_pred cccccCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcC
Q 000834 98 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG 177 (1263)
Q Consensus 98 vDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg 177 (1263)
.| -..|-+.+++-+-...=-.|..--+-++.|+... .|+...++++-.+..|...+.+.+-.||-|+..|++.-+
T Consensus 85 ~d-k~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D----~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 85 ED-KAVIRENILETIVQVPELIRVQLTACLNTIIKAD----YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred HH-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC----CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 21 1123345666666666677887777777888632 234468888999999999999999999999999999754
Q ss_pred -------chhhhhhhchHHHHHHHh
Q 000834 178 -------PAVEKSSKGVLSDILKCL 195 (1263)
Q Consensus 178 -------~~f~~~~~~llp~lL~kl 195 (1263)
.+....+..++|.+++.+
T Consensus 160 ~k~~eeR~~l~~~v~~~fP~il~~~ 184 (1010)
T KOG1991|consen 160 WKKDEERQPLGEAVEELFPDILQIF 184 (1010)
T ss_pred hccccccccHHHHHHHHHHHHHHHH
Confidence 335556667777777643
No 245
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.87 E-value=3.4e+02 Score=33.16 Aligned_cols=122 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHhccccchhhH-HHHHHHHHHHHHhhcCchHHHHHHHHHhH--HHHHHHHhhcCCCcchHHHHhHH
Q 000834 432 TDFKKQVDGLEMLQKALPSIRKDII-EVLDILLRWFVLQFCKSNTTCLLKVLEFL--PELFDTLRDEGYSLTESEAAVFL 508 (1263)
Q Consensus 432 ~dwk~Rl~ale~L~~~l~~~~~~~~-~~lDlllk~l~lrl~DtN~qV~~k~Le~L--~~l~~~L~~~~~~lsd~ea~~~l 508 (1263)
.+-...+--++++.+.++..++... ....-+|+.++..+...|++|+.++|.++ ..++..+. ...+...-.++
T Consensus 267 t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~----~~~~~i~p~i~ 342 (409)
T PF01603_consen 267 TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLIS----QNSRVILPIIF 342 (409)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHH----CTHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHH----hChHHHHHHHH
Q ss_pred HHHHH-HhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhhccCChHhHH
Q 000834 509 PCLVE-KSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRI 559 (1263)
Q Consensus 509 P~Lve-KlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~glksKN~rvR~ 559 (1263)
|.|.. --++=...||+.+..+++.+...- ..+|.-+....+.+..+...
T Consensus 343 ~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d--~~lf~~~~~~~~~~~~~~~~ 392 (409)
T PF01603_consen 343 PALYRNSKNHWNQTVRNLAQNVLKILMEMD--PKLFDKCAQKYKEKEQKEKA 392 (409)
T ss_dssp HHHSSTTSS-SSTTHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHH
No 246
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.85 E-value=1.2e+03 Score=27.75 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=87.7
Q ss_pred hcCccHHHHHHHHHHHHHhccccchh--hHH--HHHHHHHHHHHhhcCchHHHHHHHHHhHHHHHHHHhhcCCCcchHHH
Q 000834 429 LLSTDFKKQVDGLEMLQKALPSIRKD--IIE--VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 504 (1263)
Q Consensus 429 Lfs~dwk~Rl~ale~L~~~l~~~~~~--~~~--~lDlllk~l~lrl~DtN~qV~~k~Le~L~~l~~~L~~~~~~lsd~ea 504 (1263)
..+.+-.++..+++.|..++++.+-. ++. -++.++.++ ..+++.|-..+..+|..+++.-......+- |
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l----~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~--E- 164 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYL----ENSDAELRELAARVIGTAVQNNPKSQEQVI--E- 164 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHh----cCCcHHHHHHHHHHHHHHHhcCHHHHHHHH--H-
Confidence 35678899999999999998775321 111 133333332 445555555555544433321100000000 0
Q ss_pred HhHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhcCC-------cccHHHHHHhhcc--CChHhHHHHHHHHHHHHHhhcc
Q 000834 505 AVFLPCLVEKS-GHNIEKVREKMRELTKQIVNFYSA-------TKTLPYILEGLRS--KNNRTRIECVDLVGFLIDHHGA 574 (1263)
Q Consensus 505 ~~~lP~LveKl-GD~K~~vR~~~~~il~~l~~v~~~-------skv~~~ll~glks--KN~rvR~ecL~~L~~lI~~~G~ 574 (1263)
.-++..|+.-+ -+.-..+|.++--.+-.+....++ -..+..+.+.+++ .+.|.+.-.+..+..+++..-.
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 11344443332 122223333322222122221111 1135566677776 6677788899999988876553
Q ss_pred cccCccch--H-HHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 000834 575 EISGQLKS--L-QIVASLTAERDGEIRKAALNTLATGYKI 611 (1263)
Q Consensus 575 ~v~~~~k~--L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~ 611 (1263)
. .+..+. + ..+..++..-+-.++.+|+..+-..-..
T Consensus 245 ~-~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 245 D-EDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred h-hhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 2 111222 2 2334455556778889988887766433
No 247
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=24.18 E-value=3.4e+02 Score=34.78 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHh--cc--------CCCCCCchh----HHHHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhh
Q 000834 118 KVRLESIEAVNKILEEA--NK--------RIQPAGTGE----LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 183 (1263)
Q Consensus 118 K~RkEaLe~L~~il~~a--~~--------~i~p~~~~e----L~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~ 183 (1263)
..|..|+-.+..++... +. ... ....+ |...|.......+......+|.+||.+..
T Consensus 450 ~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------- 519 (618)
T PF01347_consen 450 YLRETALLSLGSLVHKYCVNSDSAEFCDPCSR-CIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----------S-S--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hHHHHHHHHHHHHhCceeecccccccccccch-hhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC---------
Confidence 56777887777777642 10 011 11233 34444444445666777778888887632
Q ss_pred hhchHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCCCch
Q 000834 184 SKGVLSDILKCLG---DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 260 (1263)
Q Consensus 184 ~~~llp~lL~kl~---DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~~~~ 260 (1263)
...++.++..+- +.-..+|-+|+.||..+...+ .+.+.+.+..-+.+..-.+.+|..++..|.++-+ .
T Consensus 520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P----~--- 590 (618)
T PF01347_consen 520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNTTEDPEVRIAAYLILMRCNP----S--- 590 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------
T ss_pred -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC----C---
Confidence 133444444333 346789999999999775544 4566677777776654468899999766655422 1
Q ss_pred hhhHHHHHhhh-cCCCHHHHHHHHHH
Q 000834 261 AHLLKPASIAM-TDKSSDVRKAAEAC 285 (1263)
Q Consensus 261 ~~ll~pl~~~L-~D~~~eVR~aA~~~ 285 (1263)
...+..+...+ .|++..|+..-...
T Consensus 591 ~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 591 PSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 24444555555 79999998765543
No 248
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=23.98 E-value=1.6e+02 Score=31.16 Aligned_cols=77 Identities=9% Similarity=0.108 Sum_probs=42.9
Q ss_pred HHhcCchhhHHHHHHHHhhcc---CChhHHHHHHHHHHHHHccCCC---CCchhhhHHHHHhhhcCCCHHHHHHHHHHHH
Q 000834 214 LAAVHLDKMVPYVTTALTDAK---LGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIV 287 (1263)
Q Consensus 214 ~~~~~l~~ll~~l~~~L~~kk---~~p~vR~e~L~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~ 287 (1263)
++.-|++.+++.+........ .......+++.+|...+..... .......+..++.||...+..+|..+.++|.
T Consensus 104 l~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~ 183 (187)
T PF06371_consen 104 LELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILA 183 (187)
T ss_dssp -HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 333355544444443332211 1234556666666444432211 1123456677899999999999999999999
Q ss_pred HHH
Q 000834 288 EIL 290 (1263)
Q Consensus 288 ~l~ 290 (1263)
.+|
T Consensus 184 ~lc 186 (187)
T PF06371_consen 184 ALC 186 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 249
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.90 E-value=2.6e+02 Score=39.94 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=125.4
Q ss_pred HHHHHhhHHHHhhh----ccCCHHHHHHHHHHHhcCCCCCCCCCccccccccccc-cCCCCCCCCCCccccccCCCHHHH
Q 000834 35 FLRLFYFADIKGFL----ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS-SVSSGGSDGLPREDISGKFTPTLV 109 (1263)
Q Consensus 35 ~ly~~iG~~l~~~l----~dlkp~~l~~Le~efeK~~~~~~p~p~R~~r~~~~~~-~~~~~~~dllprvDI~~kl~~~ll 109 (1263)
-+|.|+-.-+++.= +|++-.|++..+.-..++.. ++..|+|...+..-.. -..++.++..-+ .... .+++
T Consensus 25 ~~~e~l~~l~~~l~~~~ke~~l~tQ~~~~~~l~s~~~~-~~~~p~rkL~s~~i~rl~~~gd~f~~~~~---l~~c-~d~l 99 (2067)
T KOG1822|consen 25 FCLEWLRYLERNLNEEQKEDLLVTQLKLEQQLISRLTN-GAGPPTRKLISVAIARLISNGDSFSLYSR---LNSC-NDFL 99 (2067)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHhHHHHHHHHHHHcc-CCCchhHHHHHHHHHHHHhccchhhHHHH---HHHh-hhhh
Confidence 34555554455432 47888888888888888864 4556787543221000 001212221111 1111 1233
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHhcC--chhhhhhhch
Q 000834 110 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVEKSSKGV 187 (1263)
Q Consensus 110 ~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg--~~f~~~~~~l 187 (1263)
..-.-++-+....++.-+......-++.+.-+ +++.++.+.+.+.-.-.-+++....++-...++|| +....+.+.+
T Consensus 100 ~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~-~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i 178 (2067)
T KOG1822|consen 100 SDGSPSDPQRKLAALSCLGSLYEHYGRMIGRG-LEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAI 178 (2067)
T ss_pred hcCCCccHHHHHhhccchHHHHHHhhHhhcch-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 32222456666667666666665444444433 89999999998865556666777778888888998 4455566666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--c-hhhHHHHHHH----HhhccCChhHHHHHHHHHHHHHcc
Q 000834 188 LSDILKCLGDNKKHMRECTLTVLDAWLAAVH--L-DKMVPYVTTA----LTDAKLGAEGRKDLFDWLSKQLTG 253 (1263)
Q Consensus 188 lp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~--l-~~ll~~l~~~----L~~kk~~p~vR~e~L~~L~~~l~~ 253 (1263)
.-..-..+-|+.-.||-++..|+.++...-+ + ..-++.+... .... ++.+|-..-+++...+..
T Consensus 179 ~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s--~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 179 RLIAKNSLLDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEIS--NSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred HHHHhhhhhhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccc--hHHHHHHHHHHHHHHHhc
Confidence 6666677788888899999999999987543 2 1222333322 2222 477887777777666553
No 250
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=23.65 E-value=7.9e+02 Score=35.89 Aligned_cols=174 Identities=16% Similarity=0.121 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhccCCC---CCCchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCc--------------------
Q 000834 123 SIEAVNKILEEANKRIQ---PAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGP-------------------- 178 (1263)
Q Consensus 123 aLe~L~~il~~a~~~i~---p~~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~-------------------- 178 (1263)
|.+.+..|+++.-..+. +.-+.+++..|.+-.+ ..+.++...|+..+..++..+-.
T Consensus 1244 AFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~ 1323 (1780)
T PLN03076 1244 AFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQ 1323 (1780)
T ss_pred HHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 55666666654212222 2236788888877554 33456666777666544333300
Q ss_pred -------------hhhhhhhchHHHH---HHHhCCCcHHHHHHHHHHHHHHHHhcC-----------chhhHHHHHHHHh
Q 000834 179 -------------AVEKSSKGVLSDI---LKCLGDNKKHMRECTLTVLDAWLAAVH-----------LDKMVPYVTTALT 231 (1263)
Q Consensus 179 -------------~f~~~~~~llp~l---L~kl~DkK~~VR~aa~~aL~a~~~~~~-----------l~~ll~~l~~~L~ 231 (1263)
+-+.+...++|-+ -+...|.+.-||..|+++|-.++...| +..++-.|...+.
T Consensus 1324 ~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1324 SGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 0112234444443 345679999999999999987776544 1223333334443
Q ss_pred hc----c-CChhH--------HHHHHHHH-----------HHHHccCCC--CCchhhhHHHHHhhhcCCCHHHHHHHHHH
Q 000834 232 DA----K-LGAEG--------RKDLFDWL-----------SKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEAC 285 (1263)
Q Consensus 232 ~k----k-~~p~v--------R~e~L~~L-----------~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~eVR~aA~~~ 285 (1263)
+. + ..|.. ..+.-.|+ ...+..+-. ...+..++..+..|+...|.-+=..+..|
T Consensus 1404 ~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~ 1483 (1780)
T PLN03076 1404 HAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAA 1483 (1780)
T ss_pred HhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 21 0 00000 01222243 222222111 11334555557778888888888899999
Q ss_pred HHHHHHhcChh
Q 000834 286 IVEILRAGGQE 296 (1263)
Q Consensus 286 L~~l~~~vG~~ 296 (1263)
|..++...|..
T Consensus 1484 l~~li~~ng~~ 1494 (1780)
T PLN03076 1484 FVRLMSNAGHL 1494 (1780)
T ss_pred HHHHHHHhhcc
Confidence 99999888864
No 251
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.62 E-value=5.7e+02 Score=29.79 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=58.5
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHhccCCCC---CCchhHHHHHHhhhccccHHHHHHHHHHHHHHHHh--cCchhh
Q 000834 107 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQP---AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA--MGPAVE 181 (1263)
Q Consensus 107 ~ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p---~~~~eL~~aLk~rL~DsN~~V~~~AL~~l~~LA~a--lg~~f~ 181 (1263)
.|+.-+...+|.....+.--|..++.....+-.. ..+..++..|+..+...+.+++..|+.+++.|... .+.-|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 4777788889999999999999998643221111 11334556666666667778888999999988752 223332
Q ss_pred hhhhchHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHhcC
Q 000834 182 KSSKGVLSDILKCL-----GDNKKHMRECTLTVLDAWLAAVH 218 (1263)
Q Consensus 182 ~~~~~llp~lL~kl-----~DkK~~VR~aa~~aL~a~~~~~~ 218 (1263)
. ...++.+...+ .+++..+.-.=..++-.|.-+..
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~ 228 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE 228 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC
Confidence 2 44555555555 34444444444444445554443
No 252
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=5.7e+02 Score=33.40 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=63.9
Q ss_pred HHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Q 000834 149 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTT 228 (1263)
Q Consensus 149 aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~~ 228 (1263)
.++..+.|.+..+...++=.++.--. |..-.+.++.+++.- ..|.+.-||.+|.-+|--+.-.. ++ .++.++.
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~--GTgnnkair~lLh~a---VsD~nDDVrRaAVialGFVl~~d-p~-~~~s~V~ 595 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYV--GTGNNKAIRRLLHVA---VSDVNDDVRRAAVIALGFVLFRD-PE-QLPSTVS 595 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHh--ccCchhhHHHhhccc---ccccchHHHHHHHHHheeeEecC-hh-hchHHHH
Confidence 33455567777777666433332222 222223333333322 36777777777777766443221 11 1223333
Q ss_pred HHhhccCChhHHHHHHHHHHHHHccCCC-CCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 000834 229 ALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 292 (1263)
Q Consensus 229 ~L~~kk~~p~vR~e~L~~L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~~~ 292 (1263)
-|... -||.||..+.-.| -+...++ ......++.|++.--.| =||+.|.-++.-||..
T Consensus 596 lLses-~N~HVRyGaA~AL--GIaCAGtG~~eAi~lLepl~~D~~~---fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 596 LLSES-YNPHVRYGAAMAL--GIACAGTGLKEAINLLEPLTSDPVD---FVRQGALIALAMIMIQ 654 (929)
T ss_pred HHhhh-cChhhhhhHHHHH--hhhhcCCCcHHHHHHHhhhhcChHH---HHHHHHHHHHHHHHHh
Confidence 33322 2577777663222 2222222 33455666665553333 2777777777666543
No 253
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=22.35 E-value=1.2e+03 Score=28.76 Aligned_cols=179 Identities=15% Similarity=0.052 Sum_probs=111.0
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHh-------hhccccHHHHHHHHHHHHHHHHhcCc-h
Q 000834 108 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG-------RLYDSNKNLVMATLITLGAVASAMGP-A 179 (1263)
Q Consensus 108 ll~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~-------rL~DsN~~V~~~AL~~l~~LA~alg~-~ 179 (1263)
+.++.-++-|-.|..+|-.+.+.+-+. |--.+ +.+++..|+. .+.|--.-+.+..+..|..|...+=+ +
T Consensus 398 leaealcktppdqedallaaikkfgee-Piaki--kedhfenlkagieeiReaIddisaekfqasfelikciiahlikeh 474 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEE-PIAKI--KEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEH 474 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccC-cccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 345566789999999998877776531 22122 4555554443 34556666677777777776655432 2
Q ss_pred -hhhh-----hhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--c-CchhhHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000834 180 -VEKS-----SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--V-HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 250 (1263)
Q Consensus 180 -f~~~-----~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~--~-~l~~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~ 250 (1263)
|..| +..-++.++-.-||.-+.+|--|.+.+..++-- . ...-+-+.|...+. .+..|.+-..-.+-|.+.
T Consensus 475 kfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfld-anklphiAkSqggkLarl 553 (666)
T KOG4825|consen 475 KFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLD-ANKLPHIAKSQGGKLARL 553 (666)
T ss_pred hhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcc-cCcchHHHHHHhHHHHHH
Confidence 4433 334567777778999999999998888766532 2 23333344544443 333566666666667777
Q ss_pred HccCCC-CCchhhhHHHH--HhhhcCCCHHHHHHHHHHHHHHH
Q 000834 251 LTGLSG-FPDAAHLLKPA--SIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 251 l~~~~~-~~~~~~ll~pl--~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
+....+ ...+...+... +..+.++--|+|.+|+...-.++
T Consensus 554 lkdlgkGragfiediakkfgVpaeehglndkreaafaiicdmt 596 (666)
T KOG4825|consen 554 LKDLGKGRAGFIEDIAKKFGVPAEEHGLNDKREAAFAIICDMT 596 (666)
T ss_pred HHhcCCCccchhHHHHHHhCCCccccchhHHHHhHhhhhhhhc
Confidence 776654 33444444333 44678888899999987665444
No 254
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.27 E-value=2.1e+02 Score=33.56 Aligned_cols=78 Identities=14% Similarity=0.265 Sum_probs=57.7
Q ss_pred cHHHHHHhhccCChHhHHHHHHHHHHHHHhhcccccC------ccchHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHCHH
Q 000834 542 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG------QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 542 v~~~ll~glksKN~rvR~ecL~~L~~lI~~~G~~v~~------~~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~ 615 (1263)
+.+.+-.|+++...-++.-.+..++++++....+... +...++.|.-||+..|-+|-+||+..+..+.. +.+.
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHH
Confidence 3444455888889999999999999999877643221 23456888999999999999999999887633 4455
Q ss_pred HHHHh
Q 000834 616 IWRYV 620 (1263)
Q Consensus 616 l~~~l 620 (1263)
+...|
T Consensus 162 leaiF 166 (524)
T KOG4413|consen 162 LEAIF 166 (524)
T ss_pred HHHhc
Confidence 55555
No 255
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.11 E-value=1.2e+03 Score=27.57 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=80.2
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHhcC----chhhhhhh---chHHHHHHH-hCCCc---------HHHHHHHHHH
Q 000834 147 FGGLRGRLYDSNKNLVMATLITLGAVASAMG----PAVEKSSK---GVLSDILKC-LGDNK---------KHMRECTLTV 209 (1263)
Q Consensus 147 ~~aLk~rL~DsN~~V~~~AL~~l~~LA~alg----~~f~~~~~---~llp~lL~k-l~DkK---------~~VR~aa~~a 209 (1263)
+..+-+.++.....+...+|..+.+++.-.| .+|-.+.. ..+|.++.. -++.. +.||.+.+.-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 3344445655667777888999999888333 33333322 234444421 11111 2899999999
Q ss_pred HHHHHHhcCch---------hhHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCCC------Cch-hhhHHHHHhhhcC
Q 000834 210 LDAWLAAVHLD---------KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF------PDA-AHLLKPASIAMTD 273 (1263)
Q Consensus 210 L~a~~~~~~l~---------~ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~~------~~~-~~ll~pl~~~L~D 273 (1263)
+-+++...+.. .++..+..+|... .+.+-..+|..|.+.+-.-... .-+ ...+.-+......
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 99988876532 2244455555432 3566677777777665433211 111 1222234443333
Q ss_pred C----CHHHHHHHHHHHHHHHHhcC
Q 000834 274 K----SSDVRKAAEACIVEILRAGG 294 (1263)
Q Consensus 274 ~----~~eVR~aA~~~L~~l~~~vG 294 (1263)
. +..|++.+.+.|..+|..-+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCC
Confidence 3 33778777777777775444
No 256
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=22.09 E-value=6.6e+02 Score=25.45 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=63.7
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHhhhccc--cHHHHHHHHHHHHHHHHhcCchhhhhhhc
Q 000834 109 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKG 186 (1263)
Q Consensus 109 l~~l~dk~WK~RkEaLe~L~~il~~a~~~i~p~~~~eL~~aLk~rL~Ds--N~~V~~~AL~~l~~LA~alg~~f~~~~~~ 186 (1263)
.+.-+++.|----..+.+|....- ...++.+++..|-+||.|. |-..+..||.+|.-|..--...|-..++.
T Consensus 7 reATs~d~wGp~~~~m~eIa~~t~------~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 7 REATSNDPWGPSGTLMAEIARATY------NYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred HHHcCCCCCCCCHHHHHHHHHHhC------CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344556678877777777666542 2235899999999999877 77789999999999888655555444433
Q ss_pred hHHHHHHHh----------CCCcHHHHHHHHHHHHHH
Q 000834 187 VLSDILKCL----------GDNKKHMRECTLTVLDAW 213 (1263)
Q Consensus 187 llp~lL~kl----------~DkK~~VR~aa~~aL~a~ 213 (1263)
-+. +++.| +|.-..||+.|.+-++.+
T Consensus 81 ~~~-~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 81 NLY-IIRTLKDFQYIDENGKDQGINVREKAKEILELL 116 (123)
T ss_pred hHH-HHHhhccceeeCCCCCchhHHHHHHHHHHHHHh
Confidence 222 12211 133367777777665543
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=21.50 E-value=8.7e+02 Score=29.27 Aligned_cols=124 Identities=14% Similarity=0.097 Sum_probs=81.7
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCcchHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHH-hhccCC
Q 000834 476 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILE-GLRSKN 554 (1263)
Q Consensus 476 qV~~k~Le~L~~l~~~L~~~~~~lsd~ea~~~lP~LveKlGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~-glksKN 554 (1263)
.+++++|++++..+..-.+.+-.+-+-.+.+-+..|+-.+.|.- ..+-..++++ ..+-. +++.=|
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~--------Kal~f~~kA~------~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE--------KALFFPCKAA------ELVNSYGLKDWS 201 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh--------HHhhhhHhHH------HHHHhcCcCchh
Confidence 57789999998888766666667777667777788888887752 1221222222 22222 455667
Q ss_pred hHhHHHHHHHHHHHHHhhcccccCccch-HHHHHH-hhcCCCHHHHHHHHHHHHHHHHHHCHH
Q 000834 555 NRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVAS-LTAERDGEIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 555 ~rvR~ecL~~L~~lI~~~G~~v~~~~k~-L~~Iak-~i~D~d~~VR~AAl~~l~~ly~~~G~~ 615 (1263)
.+-|.-.+-.|.-.+...|-- +..+. .++..+ .+..-|.++-.-.+-+++.+|+-.||-
T Consensus 202 ~kyr~~~lyhmaValR~~G~L--gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~ 262 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRL--GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL 262 (518)
T ss_pred HHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence 778888888887777777722 23232 344433 355678888888999999999998885
No 258
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.17 E-value=1.5e+02 Score=37.13 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=62.6
Q ss_pred hCCChHHHHHHHHHHHHHHHHhcCCcccHHHHHHhh-ccCChHhHHHHHHHHHHHHHhhcccccCccchHHHHHHhhcCC
Q 000834 515 SGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAER 593 (1263)
Q Consensus 515 lGD~K~~vR~~~~~il~~l~~v~~~skv~~~ll~gl-ksKN~rvR~ecL~~L~~lI~~~G~~v~~~~k~L~~Iak~i~D~ 593 (1263)
+.|.++-||.++--.+..+|. .-...+.-.++-+ ++-|+.+|.+..-.|+-...-.|.+ .++..+-.+..|+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~--~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-----~a~diL~~L~~D~ 633 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCC--DDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-----VATDILEALMYDT 633 (926)
T ss_pred cccCchHHHHHHHHheeeeEe--cCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-----HHHHHHHHHhhCc
Confidence 467777787665444433331 1223445555655 7899999999888887665555533 3456777888999
Q ss_pred CHHHHHHHHHHHHHHHHHHCHH
Q 000834 594 DGEIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 594 d~~VR~AAl~~l~~ly~~~G~~ 615 (1263)
+.-||++|.-+++.+.....+.
T Consensus 634 ~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 634 NDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred HHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999988888765554443
No 259
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=20.35 E-value=4.7e+02 Score=27.59 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=72.7
Q ss_pred CchhHHHHHHhhhc-cccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHH--hCCCcHHHHHHHHHHHHHHHHh-c
Q 000834 142 GTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC--LGDNKKHMRECTLTVLDAWLAA-V 217 (1263)
Q Consensus 142 ~~~eL~~aLk~rL~-DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~k--l~DkK~~VR~aa~~aL~a~~~~-~ 217 (1263)
+|-+|+..|-+.+. +.+..+...++.++|.|. |+. ||..-.+..-... -.+......+... .+... .
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-ALD----P~~~k~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~ 77 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILG-ALD----PYKHKSIQKSLDSKSSENSNDESTDISL----PMMGISP 77 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ccC----cHHHhcccccCCccccccccccchhhHH----hhccCCC
Confidence 46778888888774 667999999999888763 232 2222111100000 0111111111111 11111 1
Q ss_pred Cchh-----hHHHHHHHHhhccCChhHHHHHHHHHHHHHccCCC--CCchhhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 000834 218 HLDK-----MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 290 (1263)
Q Consensus 218 ~l~~-----ll~~l~~~L~~kk~~p~vR~e~L~~L~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~eVR~aA~~~L~~l~ 290 (1263)
+.++ ++..+..-|.++. -..-...++.-+...|...+. .+.+...++++...+.......|+.-..-|..++
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~s-Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPS-LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222 2233334444431 123334555555556654432 3345566666788887777788888888888777
Q ss_pred HhcC
Q 000834 291 RAGG 294 (1263)
Q Consensus 291 ~~vG 294 (1263)
..++
T Consensus 157 ~ivk 160 (160)
T PF11865_consen 157 SIVK 160 (160)
T ss_pred HHhC
Confidence 6653
No 260
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.27 E-value=4.2e+02 Score=33.36 Aligned_cols=134 Identities=14% Similarity=0.195 Sum_probs=76.1
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHhcCchhhhhhhchHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 000834 148 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVT 227 (1263)
Q Consensus 148 ~aLk~rL~DsN~~V~~~AL~~l~~LA~alg~~f~~~~~~llp~lL~kl~DkK~~VR~aa~~aL~a~~~~~~l~~ll~~l~ 227 (1263)
++++....+.+.-+...+...|. .+..-|. --|.+.+-...+..|++|.++|. .-.|+..+++++.
T Consensus 180 ~~~~~~k~~e~~~~Kp~~~h~LS-------~ElQlYy----~~It~a~~g~~~~~r~eAL~sL~---TDsGL~~LlPyFv 245 (576)
T KOG2549|consen 180 DAVKTLKIGEPVELKPSSKHVLS-------VELQLYY----KEITEACTGSDEPLRQEALQSLE---TDSGLQQLLPYFV 245 (576)
T ss_pred ccccccccCCcccccccchhhcc-------HHHHHHH----HHHHHHHhcCCHHHHHHHHHhhc---cCccHHHHHHHHH
Confidence 34444444555555555443333 2233344 44444444477778888877765 4568889999998
Q ss_pred HHHhhccCCh--hHHHHHHHHHHHHHccC--CCC----CchhhhHHHHHhhh----------cCCCHHHHHHHHHHHHHH
Q 000834 228 TALTDAKLGA--EGRKDLFDWLSKQLTGL--SGF----PDAAHLLKPASIAM----------TDKSSDVRKAAEACIVEI 289 (1263)
Q Consensus 228 ~~L~~kk~~p--~vR~e~L~~L~~~l~~~--~~~----~~~~~ll~pl~~~L----------~D~~~eVR~aA~~~L~~l 289 (1263)
..+....... +--.++|-+|.+.+... ++. +.+-.+++.++.|+ .|.-=.+|+-|..++..+
T Consensus 246 ~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i 325 (576)
T KOG2549|consen 246 TFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQI 325 (576)
T ss_pred HHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHH
Confidence 8886431111 22233444444443322 111 22334444467765 344446999999999999
Q ss_pred HHhcCh
Q 000834 290 LRAGGQ 295 (1263)
Q Consensus 290 ~~~vG~ 295 (1263)
++.+|.
T Consensus 326 ~k~f~~ 331 (576)
T KOG2549|consen 326 CKNFST 331 (576)
T ss_pred HHhhhh
Confidence 999884
Done!