Query 000834
Match_columns 1263
No_of_seqs 286 out of 814
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 22:01:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000834.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_18-21//hhsearch_pdb/000834hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 1.0 1 1 430.9 28.1 252 385-639 11-265 (266)
2 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 271.9 23.4 227 89-318 2-247 (249)
3 2qk2_A LP04448P; mini spindles 1.0 1 1 241.3 21.5 227 90-319 2-233 (242)
4 4ffb_C Protein STU2; tubulin f 1.0 1 1 224.3 15.3 213 425-637 14-243 (278)
5 4ffb_C Protein STU2; tubulin f 1.0 1 1 207.3 18.1 215 98-318 7-242 (278)
6 2of3_A ZYG-9; multifunctional 1.0 1 1 179.5 19.2 214 101-321 44-265 (266)
7 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 175.8 19.1 218 417-637 13-248 (249)
8 2qk2_A LP04448P; mini spindles 1.0 1 1 166.1 19.1 218 417-638 12-234 (242)
9 1b3u_A Protein (protein phosph 1.0 1 1 150.9 30.1 182 425-615 368-553 (588)
10 1b3u_A Protein (protein phosph 1.0 1 1 147.5 45.3 183 426-615 287-475 (588)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=430.88 Aligned_cols=252 Identities=27% Similarity=0.563 Sum_probs=241.7
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 47854677664631455678866679999999875512989853058228999999999999601150245788999999
Q 000834 385 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLR 464 (1263)
Q Consensus 385 ~~~~k~~~~~~~v~kw~f~~p~~e~ve~L~~q~~~~i~~~l~~~Lfs~dwk~Rl~ale~L~~~l~s~~~~~~~~lDlllk 464 (1263)
|.++..+++++++++|+|++|++|++++|+++|.+++++++..+|||+|||+|++|++.|.+.+++.+++++.++|++|+
T Consensus 11 K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~k 90 (266)
T 2of3_A 11 KKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLK 90 (266)
T ss_dssp HHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 78888875134666688899998999999999998455999998628779999999999998830176999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99986067409999999986999999986317886357798678999998289749999999999999998628736089
Q 000834 465 WFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLP 544 (1263)
Q Consensus 465 ~l~lrl~DtN~qV~~k~Le~l~~ll~~L~~~~~~lsd~ea~~~lP~LieKlGD~K~~vR~~~~~il~~i~~v~~~skv~~ 544 (1263)
|+++||+|+|++|++++|+++.++|.+|.+.+|.+++||+.+|+|+|++|+||+|++||+.++.+++.++.+||++++++
T Consensus 91 w~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~ 170 (266)
T 2of3_A 91 WCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTP 170 (266)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999718879999999999999999998645565098999789999998289748899999999999998789999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf 999731367867599999999999996065422742108---99997611799888999999999999987988999716
Q 000834 545 YILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVG 621 (1263)
Q Consensus 545 ~ll~glksKN~kvR~ecL~~L~~lI~~~G~~v~~~~k~L---~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~i~k~l~ 621 (1263)
++++|++|||||+|+||++|++.+|++||+. +.+.+ +.|+++++|+|++||++|++|++++|+++|+.+|+++|
T Consensus 171 ~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 171 MLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAG 247 (266)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999971698999999999999999862997---2000243479999873998789999999999999981199999884
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999997777
Q 000834 622 KLTDAQKSMLDDRFKWKV 639 (1263)
Q Consensus 622 ~L~~~~~s~Leer~kr~~ 639 (1263)
+|+++++++|++||||++
T Consensus 248 ~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 248 RMADKDKSLVEERIKRTG 265 (266)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC
T ss_conf 489999999999986445
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=271.87 Aligned_cols=227 Identities=16% Similarity=0.193 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHCCCCC--CCCCHHHHHHHHHHH-CCCCHHHHHH
Q ss_conf 99999988565556789879973179991689999999999-9997056789--898015999998531-2432999999
Q 000834 89 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMA 164 (1263)
Q Consensus 89 ~~~~d~lprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~-il~~a~~kI~--p~~~geL~~aLk~rL-~DsN~~V~~~ 164 (1263)
++++|++++|||+++||++|++.+.+++|++|++|+++|.. +++. ++++. ..+|++++..|++.+ .|+|..|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CCHHHHCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8657616714665517720787851687999999999999999745-986566742399999999998335898999999
Q ss_pred HHHHHHHHHHHCC-CHHH-HHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC------C-CHHHHHHHHHHHHHCCC
Q ss_conf 9999999999619-1123-213304999999919892879999999999999963------8-03258999999710468
Q 000834 165 TLITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKL 235 (1263)
Q Consensus 165 AL~~l~~LA~~lg-~~f~-~~~~~llp~lL~~l~DkK~~VR~aa~~aL~a~~~~~------~-ld~ile~l~~~L~~kk~ 235 (1263)
|+++++.|+.+++ +.|. +|...++|.++++++|+|+.|++++..||+++++++ + ++.+++.+..+|.++
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-- 158 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-- 158 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC--
T ss_conf 999999999762654541878999999999987379779999999999999997301235776999999999987699--
Q ss_pred CHHHHHHHHHHHHHHHCCCCCC-----CCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHH
Q ss_conf 9568999999999997038999-----861-3207999964069997799999998999998258023546530599158
Q 000834 236 GAEGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPA 309 (1263)
Q Consensus 236 ~p~vR~e~L~wL~~~l~~~~~~-----~~~-~~li~pi~~~L~D~~~dVR~aA~~~L~~l~~~iG~~~i~~~l~~L~~~~ 309 (1263)
+|++|.+++.||.+++...+.. ..+ ..+++.+..+++|++++||++|.++++.+++++|++.+.+++.+|+..+
T Consensus 159 ~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k 238 (249)
T 2qk1_A 159 TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLK 238 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 83999999999999998767850668898799999999998669989999999999999999819787899999870889
Q ss_pred HHHHHHHHH
Q ss_conf 999999963
Q 000834 310 LALILERIK 318 (1263)
Q Consensus 310 ~~~ilek~~ 318 (1263)
+++|.+.++
T Consensus 239 ~~ki~~~~~ 247 (249)
T 2qk1_A 239 RKKIEETVK 247 (249)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999874
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=241.34 Aligned_cols=227 Identities=19% Similarity=0.264 Sum_probs=207.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHH
Q ss_conf 999998856555678987997317999168999999999999970567898980159999985312-4329999999999
Q 000834 90 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLIT 168 (1263)
Q Consensus 90 ~~~d~lprvDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~kI~p~~~geL~~aLk~rL~-DsN~~V~~~AL~~ 168 (1263)
+++|++|++||+.+|+++|++.+.|++|++|++|++.|..+++. ++.+...++++++..|++++. |+|.+|+..|+.+
T Consensus 2 d~~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~-~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTD-HPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHH-CSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 87773886532001798999662638789999999999998712-88888777999999999984568989999999999
Q ss_pred HHHHHHHCCCHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999961911232133049999999198928799999999999999638032589999997104689568999999999
Q 000834 169 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 248 (1263)
Q Consensus 169 l~~LA~~lg~~f~~~~~~llp~lL~~l~DkK~~VR~aa~~aL~a~~~~~~ld~ile~l~~~L~~kk~~p~vR~e~L~wL~ 248 (1263)
++.|+.++|+.|.+|+..++|.++++++|+|+.||+++..+|.+++..++++.+++.+...+.++ +|.+|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHH
T ss_conf 99999998661798999999999999768988999999999999997289999999999988489--8399999999999
Q ss_pred HHHCCCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 997038999----86132079999640699977999999989999982580235465305991589999999632
Q 000834 249 KQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 319 (1263)
Q Consensus 249 ~~l~~~~~~----~~~~~li~pi~~~L~D~~~dVR~aA~~~L~~l~~~iG~~~i~~~l~~L~~~~~~~ilek~~~ 319 (1263)
..+..+++. ..+..+++.+..+++|++.+||++|.++++.++.++|++.+.+++.+|++.++++|.+.+..
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~ 233 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999871887766899999999999884699858999999999999998499999999985279999999999988
No 4
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=224.35 Aligned_cols=213 Identities=18% Similarity=0.174 Sum_probs=141.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHH--H---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 985305822899999999999960115024578--8---9999999998606740999999998699999998631--78
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE--V---LDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDE--GY 497 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~s~~~~~~~--~---lDlllk~l~lrl~DtN~qV~~k~Le~l~~ll~~L~~~--~~ 497 (1263)
+..+|.|++||.|++|++++.+.+......... . +.-+..++..++.|+|++|+.++|+++..++..+... .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77752068189999999999999863865555306799999989999998545449999999999999999851221012
Q ss_pred CCCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 86357798678999998-2897499999999999999986-287360899997313678675999999999999960654
Q 000834 498 SLTESEAAVFLPCLVEK-SGHNIEKVREKMRELTKQIVNF-YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 575 (1263)
Q Consensus 498 ~lsd~ea~~~lP~LieK-lGD~K~~vR~~~~~il~~i~~v-~~~skv~~~ll~glksKN~kvR~ecL~~L~~lI~~~G~~ 575 (1263)
.+....+..++|.|++| +||.|..+|+.+..++..++.. ++...+++.++.++++|||++|.+|+.||..++..||..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 02588899998999999705763899999999999999861769999999999884268778999999999999984987
Q ss_pred CCCC---CCHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHH----HHHCCCCHHHHHHHHHHHHH
Q ss_conf 2274---2108-9999761179988899999999999998798899----97169999999999999977
Q 000834 576 ISGQ---LKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIW----RYVGKLTDAQKSMLDDRFKW 637 (1263)
Q Consensus 576 v~~~---~k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~i~----k~l~~L~~~~~s~Leer~kr 637 (1263)
++.+ .+.+ +.+.++++|+|++||++|+++++++|+++|+.++ .++++++|.+++.|+++|.+
T Consensus 174 ~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k 243 (278)
T 4ffb_C 174 NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAK 243 (278)
T ss_dssp TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 6881447999999999998178699999999999999999684344555666611899999999999986
No 5
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=207.30 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=179.0
Q ss_pred CCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 65556789879973179991689999999999999705678989-----8015999998531243299999999999999
Q 000834 98 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-----GTGELFGGLRGRLYDSNKNLVMATLITLGAV 172 (1263)
Q Consensus 98 vDI~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~kI~p~-----~~geL~~aLk~rL~DsN~~V~~~AL~~l~~L 172 (1263)
+| ..+|| |.+++.||+||+|++|+++|.+++.. ++...+. .++++...|++++.|+|+.|+..+++++..+
T Consensus 7 ~d-~sklp--l~e~l~sk~WK~R~eale~l~~~~~~-~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~ 82 (278)
T 4ffb_C 7 VD-YTTLP--LEERLTYKLWKARLEAYKELNQLFRN-SVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSL 82 (278)
T ss_dssp -----CCC--HHHHTTCSSHHHHHHHHHHHHHHHHT-C----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-HHCCC--HHHHCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 22-54099--77752068189999999999999863-8655553067999999899999985454499999999999999
Q ss_pred HHHCCCH------HHHHHHCHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9961911------232133049999999-198928799999999999999638-03258999999710468956899999
Q 000834 173 ASAMGPA------VEKSSKGVLSDILKC-LGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLF 244 (1263)
Q Consensus 173 A~~lg~~------f~~~~~~llp~lL~~-l~DkK~~VR~aa~~aL~a~~~~~~-ld~ile~l~~~L~~kk~~p~vR~e~L 244 (1263)
+..++.. +..++..++|.++++ ++|.|+.+|+.+.+++..+++.+. .+.+++.+..++.++ +|++|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~K--npkv~~~~l 160 (278)
T 4ffb_C 83 IDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKK--LPKLIAAAA 160 (278)
T ss_dssp HTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCS--CHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHH
T ss_conf 998512210120258889999899999970576389999999999999986176999999999988426--877899999
Q ss_pred HHHHHHHCCCCCCC-CH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHH---HHHHHCCCHHHHHHHHHH
Q ss_conf 99999970389998-61----32079999640699977999999989999982580235---465305991589999999
Q 000834 245 DWLSKQLTGLSGFP-DA----AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETI---EKNLKDIQGPALALILER 316 (1263)
Q Consensus 245 ~wL~~~l~~~~~~~-~~----~~li~pi~~~L~D~~~dVR~aA~~~L~~l~~~iG~~~i---~~~l~~L~~~~~~~ilek 316 (1263)
.||.+++..++... .. ..+++.+..+++|++++||++|.++++++|+++|+... ..++++|++..++.+.+.
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~ 240 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKL 240 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999849876881447999999999998178699999999999999999684344555666611899999999999
Q ss_pred HH
Q ss_conf 63
Q 000834 317 IK 318 (1263)
Q Consensus 317 ~~ 318 (1263)
+.
T Consensus 241 f~ 242 (278)
T 4ffb_C 241 FA 242 (278)
T ss_dssp HS
T ss_pred HH
T ss_conf 98
No 6
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=179.50 Aligned_cols=214 Identities=19% Similarity=0.250 Sum_probs=179.9
Q ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 56789879973179991689999999999999705678-9898015999998531243299999999999999996191-
Q 000834 101 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP- 178 (1263)
Q Consensus 101 ~~kl~~~ll~~l~dk~WK~RkEaLe~L~~il~~a~~kI-~p~~~geL~~aLk~rL~DsN~~V~~~AL~~l~~LA~~lg~- 178 (1263)
...+++++...+-+++||.|.+|++.|...+.+ ++.. ... +.-++.-+.-|+.|+|.+|...+++++..+...|+.
T Consensus 44 ~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~-~~~~~~~~-lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 44 GNQAKVSLMSQLFHKDFKQHLAALDSLVRLADT-SPRSLLSN-SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp HTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHH-CHHHHHHT-HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 984559999986287799999999999988301-76999999-9999999999971887999999999999999999864
Q ss_pred --HHHHH-HHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf --12321-330499999991989287999999999999996380325899999971046895689999999999970389
Q 000834 179 --AVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 255 (1263)
Q Consensus 179 --~f~~~-~~~llp~lL~~l~DkK~~VR~aa~~aL~a~~~~~~ld~ile~l~~~L~~kk~~p~vR~e~L~wL~~~l~~~~ 255 (1263)
.+..| +..++|.+++|+||+|..||+++.+.+..+...+++..+++.+..++.+| ||++|.+++.|+...++.++
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSK--NARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCC
T ss_conf 5565098999789999998289748899999999999998789999999999997169--89999999999999998629
Q ss_pred CCCCHHHHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 998613207---999964069997799999998999998258023546530599158999999963207
Q 000834 256 GFPDAAHLL---KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 321 (1263)
Q Consensus 256 ~~~~~~~li---~pi~~~L~D~~~dVR~aA~~~L~~l~~~iG~~~i~~~l~~L~~~~~~~ilek~~~~g 321 (1263)
.. ....+ +.++.+++|+|++||++|..|+.++|+++|++ +.+++++|.+..+.-|.|+++..+
T Consensus 200 ~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~-v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 200 IS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp SG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH-HHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred CC--CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 97--2000243479999873998789999999999999981199-999884489999999999986445
No 7
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=175.82 Aligned_cols=218 Identities=18% Similarity=0.308 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCCCCHHH--HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 875512989853058228999999999999-601150245--788999999999860-6740999999998699999998
Q 000834 417 MMKYFREDLHRRLLSTDFKKQVDGLEMLQK-ALPSIRKDI--IEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTL 492 (1263)
Q Consensus 417 ~~~~i~~~l~~~Lfs~dwk~Rl~ale~L~~-~l~s~~~~~--~~~lDlllk~l~lrl-~DtN~qV~~k~Le~l~~ll~~L 492 (1263)
+.+.++++|...|.|++|++|.+|++.|.. .+++.++-. ...++-+++.+...+ +|+|+.|...++..+..+...+
T Consensus 13 i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 13 ILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 65517720787851687999999999999999745986566742399999999998335898999999999999999762
Q ss_pred HHCCCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC------C-CCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 63178863-5779867899999828974999999999999999862------8-73608999973136786759999999
Q 000834 493 RDEGYSLT-ESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFY------S-ATKTLPYILEGLRSKNNRTRIECVDL 564 (1263)
Q Consensus 493 ~~~~~~ls-d~ea~~~lP~LieKlGD~K~~vR~~~~~il~~i~~v~------~-~skv~~~ll~glksKN~kvR~ecL~~ 564 (1263)
.. ..|. .| +..++|.+++++||.|..|++.+...+..++..+ + ...+++.+.+.+++|||++|.+++.|
T Consensus 93 ~~--~~f~~~y-~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 93 KT--PGFSKDY-VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp CT--TTSCHHH-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CC--CCCCHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 65--4541878-99999999998737977999999999999999730123577699999999998769983999999999
Q ss_pred HHHHHHHHCCC--CC-CCC-CHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH-HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999960654--22-742-108-99997611799888999999999999987988-9997169999999999999977
Q 000834 565 VGFLIDHHGAE--IS-GQL-KSL-QIVASLTAERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFKW 637 (1263)
Q Consensus 565 L~~lI~~~G~~--v~-~~~-k~L-~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~-i~k~l~~L~~~~~s~Leer~kr 637 (1263)
|..++..++.. .. ... +.+ +.+.++++|+++.||.+|..|++.+++.+|++ +..|+.+|++..++.|++.+++
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~~~~~ 248 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999987678506688987999999999986699899999999999999998197878999998708899999998745
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=166.12 Aligned_cols=218 Identities=17% Similarity=0.170 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 875512989853058228999999999999601150245788999999999860-6740999999998699999998631
Q 000834 417 MMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDE 495 (1263)
Q Consensus 417 ~~~~i~~~l~~~Lfs~dwk~Rl~ale~L~~~l~s~~~~~~~~lDlllk~l~lrl-~DtN~qV~~k~Le~l~~ll~~L~~~ 495 (1263)
+...+++++...+.++||+.|.+|+..|...+...+.-......-++..+..++ +|.|.+|...++..+..+...+..
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~- 90 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK- 90 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-
T ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-
T ss_conf 2001798999662638789999999999998712888887779999999999845689899999999999999999866-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78863577986789999982897499999999999999986287360899997313678675999999999999960654
Q 000834 496 GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 575 (1263)
Q Consensus 496 ~~~lsd~ea~~~lP~LieKlGD~K~~vR~~~~~il~~i~~v~~~skv~~~ll~glksKN~kvR~ecL~~L~~lI~~~G~~ 575 (1263)
.|. ..+..++|.|++++||.+..||+.+..++..++...+...+++.+..++++|||++|.+++.|++.++..++..
T Consensus 91 --~~~-~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 91 --RFS-NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp --GGH-HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred --HHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf --179-89999999999997689889999999999999972899999999999884898399999999999999871887
Q ss_pred CCC--CC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH-HHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 227--42-10899997611799888999999999999987988-99971699999999999999777
Q 000834 576 ISG--QL-KSLQIVASLTAERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFKWK 638 (1263)
Q Consensus 576 v~~--~~-k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~-i~k~l~~L~~~~~s~Leer~kr~ 638 (1263)
... .. ..++.+..+++|+++.||.+|..+++.++..+|++ +..++.+|++..++.|.+.++++
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 7668999999999998846998589999999999999984999999999852799999999999888
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=150.94 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=80.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 98530582289999999999996011502457889999999998606740999999998699999998631788635779
Q 000834 425 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 504 (1263)
Q Consensus 425 l~~~Lfs~dwk~Rl~ale~L~~~l~s~~~~~~~~lDlllk~l~lrl~DtN~qV~~k~Le~l~~ll~~L~~~~~~lsd~ea 504 (1263)
+...+.+.++..|..+++.+...+...+... ..+.++-.+...+.|.+..|...+++.+..+...+.... + .
T Consensus 368 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~----~ 439 (588)
T 1b3u_A 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--F----D 439 (588)
T ss_dssp HHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--C----C
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH--H----H
T ss_conf 9998379836899999998999997549898--988889999998359981399999999999998809898--9----9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 867899999828974999999999999999862873----6089999731367867599999999999996065422742
Q 000834 505 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT----KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 580 (1263)
Q Consensus 505 ~~~lP~LieKlGD~K~~vR~~~~~il~~i~~v~~~s----kv~~~ll~glksKN~kvR~ecL~~L~~lI~~~G~~v~~~~ 580 (1263)
..++|.++..+.|....||..+-..+..++..++.. .+++.+...+.+.++.+|..++..++.+...+|.... ..
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~-~~ 518 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT-TK 518 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHH-HH
T ss_conf 99999999882598199999999999999999684457888999999983189879999999999999976698999-99
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 10899997611799888999999999999987988
Q 000834 581 KSLQIVASLTAERDGEIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 581 k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~ 615 (1263)
..++.+.+++.|.++.||.+++.+++.+...+|+.
T Consensus 519 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 99999986678998627999999999999986536
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=147.52 Aligned_cols=183 Identities=14% Similarity=0.157 Sum_probs=92.7
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 8530582289999999999996011502457--88999999999860674099999999869999999863178863577
Q 000834 426 HRRLLSTDFKKQVDGLEMLQKALPSIRKDII--EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 503 (1263)
Q Consensus 426 ~~~Lfs~dwk~Rl~ale~L~~~l~s~~~~~~--~~lDlllk~l~lrl~DtN~qV~~k~Le~l~~ll~~L~~~~~~lsd~e 503 (1263)
...+.+.+|..|..+...+.......+.... ...+.++.++...+.|.+..|-..++..+..+...+... ..
T Consensus 287 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~------~~ 360 (588)
T 1b3u_A 287 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD------NT 360 (588)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH------HH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------HH
T ss_conf 998589958999999987999999727444365799999999999861998899999999999998886276------78
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9867899999828974999999999999999862873----608999973136786759999999999999606542274
Q 000834 504 AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT----KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQ 579 (1263)
Q Consensus 504 a~~~lP~LieKlGD~K~~vR~~~~~il~~i~~v~~~s----kv~~~ll~glksKN~kvR~ecL~~L~~lI~~~G~~v~~~ 579 (1263)
...++|.+...+.|..+.||..+-..+..++..++.. .+++.+...+++++|++|..++..++.+....|.... .
T Consensus 361 ~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-~ 439 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-D 439 (588)
T ss_dssp HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC-C
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHH-H
T ss_conf 888999999983798368999999989999975498989888899999983599813999999999999988098989-9
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 210899997611799888999999999999987988
Q 000834 580 LKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 615 (1263)
Q Consensus 580 ~k~L~~Iak~i~D~d~~VR~AAl~~l~~ly~~~G~~ 615 (1263)
...++.+...+.|.+..||.+|..+++.+...+|+.
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 999999998825981999999999999999996844
Done!