BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000835
(1263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 97 ISLREEPVVYINGRP---FVLRDVGRPFSNLEYTGINRARVEQMEARLKEDIIMEAARFG 153
+ LR+E NG + LRD G NL G N+A V + E+ + AAR
Sbjct: 416 MDLRQETHGVFNGNAVSWYGLRDWG----NL---GKNKAEVLK-----DENSRLNAAR-- 461
Query: 154 NKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQD 213
K L+ EL +M +PV +SV + E+ VE + Y R+ TD P +
Sbjct: 462 GKSLIVAELDKDKMPIDPKPVKIESV-----MTEQQLVEKNGLHYYRIAATDHIWPSAAN 516
Query: 214 FDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLV 251
D ++ N + F+CQ G GRTT M + ++
Sbjct: 517 IDEFINFTRTMPANAWLHFHCQAGAGRTTAYMAMYDMM 554
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 560 LKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYAR 619
LK++ R G +++V D D + V ESV T ++ +E +G + Y R
Sbjct: 450 LKDENSRLNAARGKSLIVAELDKDKMPIDP-KPVKIESVMTEQQL---VEKNG--LHYYR 503
Query: 620 VPITDGKAPKTSDFDMLAVNIASASKDTAFV-FNCQMGRGRTTTGTVIACLLK 671
+ TD P ++ D +N A++ F+CQ G GRTT + ++K
Sbjct: 504 IAATDHIWPSAANIDEF-INFTRTMPANAWLHFHCQAGAGRTTAYMAMYDMMK 555
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 617 YARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
Y R+ + D P D D S KD ++C G GRTT V+ +LK
Sbjct: 203 YFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIFMVMHDILK 257
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 187 EELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMV 246
EE V+ + +Y R+ + D P + D D ++ + + ++C G GRTT MV
Sbjct: 192 EEEMVKQHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIFMV 251
Query: 247 IATLV 251
+ ++
Sbjct: 252 MHDIL 256
>pdb|2PSZ|A Chain A, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|2PSZ|B Chain B, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|3D1H|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1H|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1O|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1O|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1Q|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
pdb|3D1Q|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
Length = 340
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 117 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 174
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 175 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 217
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+C+ G GRTT V+ +LK
Sbjct: 218 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 264
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 25/194 (12%)
Query: 61 DSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVLRDVGRP 120
D+L + G + T ++NV + + G + + LR+E Y++G P
Sbjct: 92 DALHISGSSAFTPAQLKNVAAKLREKTAGP---IYDVDLRQESHGYLDGIPVSW------ 142
Query: 121 FSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILV---TDELPDGQMVDQWEPVSCD 177
+ ++ + ++ Q EA E + AA + +LP+G V + + V
Sbjct: 143 YGERDWANLGKS---QHEALADERHRLHAALHKTVYIAPLGKHKLPEGGEVRRVQKVQT- 198
Query: 178 SVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMG 237
E+ E + Y R+ TD P ++ D + + + F+C+ G
Sbjct: 199 ---------EQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHCEAG 249
Query: 238 RGRTTTGMVIATLV 251
GRTT MV+ ++
Sbjct: 250 VGRTTAFMVMTDML 263
>pdb|1U26|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
pdb|1U26|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
Length = 337
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 112 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 169
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 170 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 212
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+C+ G GRTT V+ +LK
Sbjct: 213 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 259
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 25/194 (12%)
Query: 61 DSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVLRDVGRP 120
D+L + G + T ++NV + + G + + LR+E Y++G P
Sbjct: 87 DALHISGSSAFTPAQLKNVAAKLREKTAGP---IYDVDLRQESHGYLDGIPVSW------ 137
Query: 121 FSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILV---TDELPDGQMVDQWEPVSCD 177
+ ++ + ++ Q EA E + AA + +LP+G V + + V
Sbjct: 138 YGERDWANLGKS---QHEALADERHRLHAALHKTVYIAPLGKHKLPEGGEVRRVQKVQT- 193
Query: 178 SVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMG 237
E+ E + Y R+ TD P ++ D + + + F+C+ G
Sbjct: 194 ---------EQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHCEAG 244
Query: 238 RGRTTTGMVIATLV 251
GRTT MV+ ++
Sbjct: 245 VGRTTAFMVMTDML 258
>pdb|2B4O|A Chain A, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4O|B Chain B, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 111 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 168
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 169 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 211
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+C+ G G+TT V+ +LK
Sbjct: 212 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGKTTAFMVMTDMLK 258
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 25/194 (12%)
Query: 61 DSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVLRDVGRP 120
D+L + G + T ++NV + + G + + LR+E Y++G P
Sbjct: 86 DALHISGSSAFTPAQLKNVAAKLREKTAGP---IYDVDLRQESHGYLDGIPVSW------ 136
Query: 121 FSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILV---TDELPDGQMVDQWEPVSCD 177
+ ++ + ++ Q EA E + AA + +LP+G V + + V
Sbjct: 137 YGERDWANLGKS---QHEALADERHRLHAALHKTVYIAPLGKHKLPEGGEVRRVQKVQT- 192
Query: 178 SVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMG 237
E+ E + Y R+ TD P ++ D + + + F+C+ G
Sbjct: 193 ---------EQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHCEAG 243
Query: 238 RGRTTTGMVIATLV 251
G+TT MV+ ++
Sbjct: 244 VGKTTAFMVMTDML 257
>pdb|2B4P|A Chain A, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4P|B Chain B, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 111 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 168
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + ++Y R+ T+
Sbjct: 169 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATN 211
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+C+ G GRTT V+ +LK
Sbjct: 212 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 258
>pdb|3MOZ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
pdb|3MOZ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
Length = 314
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 91 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 148
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 149 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 191
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+ + G GRTT V+ +LK
Sbjct: 192 HVWPTPENIDRFLAFYRTLPQDAWLHFHAEAGVGRTTAFMVMTDMLK 238
>pdb|1U24|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
pdb|1U24|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
pdb|1U25|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
pdb|1U25|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
pdb|1U25|C Chain C, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
Length = 337
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 112 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 169
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + +Y R+ TD
Sbjct: 170 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----XRYFRIAATD 212
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+C+ G GRTT V LK
Sbjct: 213 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGRTTAFXVXTDXLK 259
>pdb|3P3A|A Chain A, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
pdb|3P3A|B Chain B, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
Length = 320
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 436 MGVVAALRNGQVLGSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDG 495
MG + A G GS L +D P + + PER+ A G P + D
Sbjct: 9 MGTLEAQTQGP--GSMVSLPADPSPELKQYAHPERLVTADWLASNLGRPGLVIVESDED- 65
Query: 496 IRSVIRRIGHFKGCCPVFWHNMREEPVI--YINGKPF 530
++ GH G + WH +P + YING+ F
Sbjct: 66 --VLLYDTGHIPGAVKIDWHTDLNDPAVRDYINGEQF 100
>pdb|3O3L|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
pdb|3O3L|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
Length = 340
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 117 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 174
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 175 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 217
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+ + G GRTT V+ +LK
Sbjct: 218 HVWPTPENIDRFLAFYRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLK 264
>pdb|3MMJ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
Hexakisphosphate
pdb|3MMJ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
Hexakisphosphate
Length = 314
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 91 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 148
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 149 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 191
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+ + G GRTT V+ +LK
Sbjct: 192 HVWPTPENIDRFLAFYRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLK 238
>pdb|2PT0|A Chain A, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
pdb|2PT0|B Chain B, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
Length = 340
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 507 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 564
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 117 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 174
Query: 565 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 624
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 175 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 217
Query: 625 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
P + D + +D F+ + G GRTT V+ +LK
Sbjct: 218 HVWPTPENIDRFLAFYRTLPQDAWLHFHXEAGVGRTTAFMVMTDMLK 264
>pdb|3HZU|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Ssea (Rhodanese) From Mycobacterium
Tuberculosis
Length = 318
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 436 MGVVAALRNGQVLGSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDG 495
MG + A G GS L +D P + PER+ A G P + D
Sbjct: 9 MGTLEAQTQGP--GSMP-LPADPSPTLSAYAHPERLVTADWLSAHMGAPGLAIVESDED- 64
Query: 496 IRSVIRRIGHFKGCCPVFWHNMREEPVI--YINGKPF 530
++ +GH G + WH +P + YING+ F
Sbjct: 65 --VLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQF 99
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 811 EAFDGFCGQGESRMTFKSWLRQRP----EVQAMKWSIRIRP---GRFLTVPEELRAPQES 863
E DG QG R K W +Q + ++ + P G ++T E AP+E
Sbjct: 215 EMMDGLM-QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF-EGANAPKEP 272
Query: 864 QHGDAVMEAIVRARNGSVL 882
Q DAV+ A RA NG ++
Sbjct: 273 QRYDAVLVAAGRAPNGKLI 291
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 811 EAFDGFCGQGESRMTFKSWLRQRP----EVQAMKWSIRIRP---GRFLTVPEELRAPQES 863
E DG QG R K W +Q + ++ + P G ++T E AP+E
Sbjct: 215 EMMDGLM-QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF-EGANAPKEP 272
Query: 864 QHGDAVMEAIVRARNGSVL 882
Q DAV+ A RA NG ++
Sbjct: 273 QRYDAVLVAAGRAPNGKLI 291
>pdb|2QGM|A Chain A, Crystal Structure Of Succinoglycan Biosynthesis Protein At
The Resolution 1.7 A. Northeast Structural Genomics
Consortium Target Bcr136
Length = 445
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 528 KPFVLREVERPYKNMLEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDGQIF 587
+P +L EVE YK + +TG +E ++ +LKE AER + +E + +I
Sbjct: 191 RPDLLAEVEENYKELSSFTGSIQE-YXKLTPKLKEKFKANAERVARLLKDENEQANTEII 249
Query: 588 DAWEHVSSESVQTPLEVF 605
+ E++ +++ + +E F
Sbjct: 250 PS-EYIWAKATASAIEKF 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,057,720
Number of Sequences: 62578
Number of extensions: 1651376
Number of successful extensions: 3562
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3543
Number of HSP's gapped (non-prelim): 33
length of query: 1263
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1153
effective length of database: 8,089,757
effective search space: 9327489821
effective search space used: 9327489821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)