BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000835
(1263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ULE6|PALD_HUMAN Paladin OS=Homo sapiens GN=PALD1 PE=1 SV=3
Length = 856
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 213/825 (25%), Positives = 341/825 (41%), Gaps = 173/825 (20%)
Query: 44 GAPNYRQMLFMLLWSYADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEP 103
GAPN+RQ+ L V G+ P++ G R VL+ + QKDG R V++ +REEP
Sbjct: 119 GAPNFRQV--------QGGLTVFGMGQPSLSGFRRVLQKL--QKDGHRECVIFC-VREEP 167
Query: 104 VVYINGR----PFVLRDVGRPFSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVT 159
V+++ + RD NL+ G RVE +E ++++I A N V
Sbjct: 168 VLFLRADEDFVSYTPRDKQNLHENLQGLGPG-VRVESLELAIRKEIHDFAQLSENTYHVY 226
Query: 160 DELPDGQMVDQW-EPVSC-----DSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQD 213
D W EP + D + +VY+ Y R+P+ ++ SP E
Sbjct: 227 H-----NTEDLWGEPHAVAIHGEDDLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEAQ 281
Query: 214 FDILVDKISQTDLNTEV----------IFNCQMGRGRTTTGMVIATLVYLNRIGASGIPR 263
D V + +T ++ +F+CQMG GRT GMV+ TL+ L+R G + P
Sbjct: 282 LDAFVSVLRETPSLLQLRDAHGPPPALVFSCQMGVGRTNLGMVLGTLILLHRSGTTSQP- 340
Query: 264 TNSIGRVFDSGSSVADNLPNSEEAIRRGEYAVIRSLTRVLEGGVEGKRQVDKVIDKCASM 323
++ + A LP ++ VI+S R++ G +VD+ I CA +
Sbjct: 341 --------EAAPTQAKPLPME-------QFQVIQSFLRMVPQGRRMVEEVDRAITACAEL 385
Query: 324 QNLREAIATYRNSILRQPDEMKRQASLSFFVEY------LERYYFLICFAVYIHTERAAL 377
+L+E + + + E Q S S + LERY++LI F Y+H E+ L
Sbjct: 386 HDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQRALWSLERYFYLILFNYYLH-EQYPL 444
Query: 378 CSSSFGHSSFADWMKARPELYSIIRRLLRRDPMGALGYANVKPSLMKMAESADGRPHEMG 437
+ SF+ W+ A PELY + L P+ P ++
Sbjct: 445 AFA----LSFSRWLCAHPELYRLPVTLSSAGPVA---------------------PRDLI 479
Query: 438 VVAALRNGQVLGSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDGIR 497
+LR ++ + R NFR V P+YG A P+ +
Sbjct: 480 ARGSLREDDLVSPDALSTV-------------REMDVANFRRVPRMPIYGTAQPSAKALG 526
Query: 498 SVIRRIGHFK-GCCPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERM 556
S++ + K V W ++REE V+ +G + LR P + +++E +
Sbjct: 527 SILAYLTDAKRRLRKVVWVSLREEAVLECDGHTYSLRWPGPP---------VAPDQLETL 577
Query: 557 EARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIK 616
EA+LK + G + +T T EVF +
Sbjct: 578 EAQLKAHLSEPPPGKEGPLTYRFQT----------------CLTMQEVFSQHRRACPGLT 621
Query: 617 YARVPITDGKAPKTSDFDMLAVNI-ASASKD--TAFVFNCQMGRGRTTTGTVIACLLKLR 673
Y R+P+ D AP+ DFD L + A+ SKD T FVF+C G+GRTTT V+A L
Sbjct: 622 YHRIPMPDFCAPREEDFDQLLEALRAALSKDPGTGFVFSCLSGQGRTTTAMVVAVLAFWH 681
Query: 674 IDYGRPIRVLHEDVTHEELDSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLL 733
I G P +V EEL S + F + ++
Sbjct: 682 IQ-GFP------EVGEEELVSVPDA-------------------------KFTKGEFQVV 709
Query: 734 WKITRLFDNGVKCREALDAIIDRCSALQ-----NIREAVL-HYRKVFNQQHVEPRVRMVA 787
K+ +L +G + ++ +DA +D S ++RE ++ YR+ + + +R +
Sbjct: 710 MKVVQLLPDGHRVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKAAKEAQ-EMRRLQ 768
Query: 788 LSRGAEYLERYFRLIAFAAYLGSEAFDGFCGQGESRMTFKSWLRQ 832
L R +YLERY LI F AYL E D + + F +W+++
Sbjct: 769 L-RSLQYLERYVCLILFNAYLHLEKADSW------QRPFSTWMQE 806
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 189/812 (23%), Positives = 308/812 (37%), Gaps = 164/812 (20%)
Query: 473 GAPNFREVSG-FPVYGVANPTIDGIRSVIRRI---GHFKGCCPVFWHNMREEPVIYINGK 528
GAPNFR+V G V+G+ P++ G R V++++ GH + C +F +REEPV+++
Sbjct: 119 GAPNFRQVQGGLTVFGMGQPSLSGFRRVLQKLQKDGHRE--CVIF--CVREEPVLFLRAD 174
Query: 529 PFVLREVERPYKNMLE-YTGIDRE-RVERMEARLKEDILREAERYGGAIMVIHETND--G 584
+ R +N+ E G+ RVE +E ++++I A+ V H T D G
Sbjct: 175 EDFVSYTPRDKQNLHENLQGLGPGVRVESLELAIRKEIHDFAQLSENTYHVYHNTEDLWG 234
Query: 585 QIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASAS 644
+ H + + EV+K +Y R+P+ + +P + D +
Sbjct: 235 EPHAVAIH-GEDDLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEAQLDAFVSVLRETP 293
Query: 645 K----------DTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRPIRVLHEDVTHEELDS 694
A VF+CQMG GRT G V+ L+ +LH S
Sbjct: 294 SLLQLRDAHGPPPALVFSCQMGVGRTNLGMVLGTLI-----------LLHR--------S 334
Query: 695 GSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLLWKITRLFDNGVKCREALDAII 754
G++S E AA T + + ++ ++ R+ G + E +D I
Sbjct: 335 GTTSQPE-----AAPT----------QAKPLPMEQFQVIQSFLRMVPQGRRMVEEVDRAI 379
Query: 755 DRCSALQNIREAVLHYRKVFNQQHVEPRV-----RMVALSRGAEYLERYFRLIAFAAYLG 809
C+ L +++E VL +K E R R LERYF LI F YL
Sbjct: 380 TACAELHDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQRALWSLERYFYLILFNYYLH 439
Query: 810 SEAFDGFCGQGESRMTFKSWLRQRPEVQAMKWSIRIRPGRFLTVPEELRAPQESQHGDAV 869
+ F ++F WL PE+ + ++ P +L A + D V
Sbjct: 440 EQYPLAFA------LSFSRWLCAHPELYRLPVTLS---SAGPVAPRDLIARGSLREDDLV 490
Query: 870 M-EAIVRARNGSVLGKGSILKMYFFPGQRTSSHIQIHGAPHVYKVDGYPVYSMATPTISG 928
+A+ R V + +M P+Y A P+
Sbjct: 491 SPDALSTVREMDVANFRRVPRM--------------------------PIYGTAQPSAKA 524
Query: 929 AKEMLAYL-GAKTKTEGSFSQKVILTDLREEAVVYINGTPFVLRELNKPVDTLKHVGITG 987
+LAYL AK + +KV+ LREEAV+ +G + LR PV +
Sbjct: 525 LGSILAYLTDAKRRL-----RKVVWVSLREEAVLECDGHTYSLRWPGPPVAPDQ------ 573
Query: 988 PVVEHMEARLKEDILTEVRQSGGRMLLHREEYNPASNQSSVVGYWENIFADDVKTPAEVY 1047
+E +EA+LK H E P + + T EV+
Sbjct: 574 --LETLEAQLKA---------------HLSEPPPGKEGPLTYRFQTCL------TMQEVF 610
Query: 1048 AALQDEGYNITYRRIPLTRERDALASDIDAI------QYCKDDSAGCYLFVSHTGFGGVA 1101
+ + +TY RIP+ D D + KD G ++F +G G
Sbjct: 611 SQHRRACPGLTYHRIPMPDFCAPREEDFDQLLEALRAALSKDPGTG-FVFSCLSGQGRTT 669
Query: 1102 YAMAIICLRLDAEANFASKVPQSLVGPHLPLTYEENLPSWASDEEAHKMGDYRDILNLTR 1161
AM + L F P EE L S D + K G+++ ++ + +
Sbjct: 670 TAMVVAVLAFWHIQGF-------------PEVGEEELVS-VPDAKFTK-GEFQVVMKVVQ 714
Query: 1162 VLVYGPQSKADVDTIIERCAGAG-----HLRDDILHYSEELKKFSNEYDEQRAYLMDIGI 1216
+L G + K +VD ++ + HLR+ I+ + K + +R L +
Sbjct: 715 LLPDGHRVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKAAKEAQEMRRLQLR--SL 772
Query: 1217 KALRRYFFLITFRSFLYCTSPAEIN--FKSWM 1246
+ L RY LI F ++L+ F +WM
Sbjct: 773 QYLERYVCLILFNAYLHLEKADSWQRPFSTWM 804
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 172/353 (48%), Gaps = 59/353 (16%)
Query: 65 VHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVLRDVGRPFSNL 124
++G A P+ + + ++L ++ K R +V+W+SLREE V+ +G + LR G P
Sbjct: 514 IYGTAQPSAKALGSILAYLTDAKRRLR-KVVWVSLREEAVLECDGHTYSLRWPGPP---- 568
Query: 125 EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLD 184
+ ++E +EA+LK + ++ P + + +C +++ +
Sbjct: 569 ----VAPDQLETLEAQLKAHL-------------SEPPPGKEGPLTYRFQTCLTMQ---E 608
Query: 185 VYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRT 241
V+ + + + Y R+P+ D +P+E+DFD L++ + D T +F+C G+GRT
Sbjct: 609 VFSQHRRACPGLTYHRIPMPDFCAPREEDFDQLLEALRAALSKDPGTGFVFSCLSGQGRT 668
Query: 242 TTGMVIATLVYLNRIGASGIPRTNSIGRVFDSGSSVADNLPNSEEAIRRGEYAVIRSLTR 301
TT MV+A L + + G P + G ++P+++ +GE+ V+ + +
Sbjct: 669 TTAMVVAVLAFWH---IQGFP---------EVGEEELVSVPDAK--FTKGEFQVVMKVVQ 714
Query: 302 VLEGGVEGKRQVDKVIDKCASMQ-----NLRE-AIATYRNS-ILRQPDEMKRQASLSFFV 354
+L G K++VD +D + +LRE I TYR + ++ EM+R S +
Sbjct: 715 LLPDGHRVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKAAKEAQEMRRLQLRS--L 772
Query: 355 EYLERYYFLICFAVYIHTERAALCSSSFGHSSFADWMK---ARPELYSIIRRL 404
+YLERY LI F Y+H E+A F+ WM+ ++ +Y I+ L
Sbjct: 773 QYLERYVCLILFNAYLHLEKA-----DSWQRPFSTWMQEVASKAGIYEILNEL 820
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 152/373 (40%), Gaps = 51/373 (13%)
Query: 906 GAPHVYKVDG-YPVYSMATPTISGAKEMLAYLGAKTKTEGSFSQKVILTDLREEAVVYIN 964
GAP+ +V G V+ M P++SG + +L K + +G ++ ++ +REE V+++
Sbjct: 119 GAPNFRQVQGGLTVFGMGQPSLSGFRRVLQ----KLQKDGH--RECVIFCVREEPVLFLR 172
Query: 965 G----TPFVLRELNKPVDTLKHVGITGPVVEHMEARLKEDILTEVRQSGGRMLLHREEYN 1020
+ R+ + L+ +G G VE +E ++++I + S ++ +
Sbjct: 173 ADEDFVSYTPRDKQNLHENLQGLG-PGVRVESLELAIRKEIHDFAQLSENTYHVYHNTED 231
Query: 1021 PASNQSSVVGYWENIFADDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDA-IQ 1079
+V + E DD+ EVY Y R+PL + L + +DA +
Sbjct: 232 LWGEPHAVAIHGE----DDLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEAQLDAFVS 287
Query: 1080 YCKD--------DSAG---CYLFVSHTGFGGVAYAMAIICLRLDAEANFASKVPQSLVGP 1128
++ D+ G +F G G M + L L + S+ P
Sbjct: 288 VLRETPSLLQLRDAHGPPPALVFSCQMGVGRTNLGMVLGTLILLHRSGTTSQ-------P 340
Query: 1129 HLPLTYEENLPSWASDEEAHKMGDYRDILNLTRVLVYGPQSKADVDTIIERCAGAGHLRD 1188
T + LP M ++ I + R++ G + +VD I CA L++
Sbjct: 341 EAAPTQAKPLP----------MEQFQVIQSFLRMVPQGRRMVEEVDRAITACAELHDLKE 390
Query: 1189 DILHYSEELKKFSNEYDEQ----RAYLMDIGIKALRRYFFLITFRSFLYCTSPA--EINF 1242
+L ++L+ E Q R + + +L RYF+LI F +L+ P ++F
Sbjct: 391 VVLENQKKLEGIRPESPAQGSGSRHSVWQRALWSLERYFYLILFNYYLHEQYPLAFALSF 450
Query: 1243 KSWMDGRPELGHL 1255
W+ PEL L
Sbjct: 451 SRWLCAHPELYRL 463
>sp|Q6DIR8|PALD_XENTR Paladin OS=Xenopus tropicalis GN=pald1 PE=2 SV=1
Length = 872
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 189/822 (22%), Positives = 347/822 (42%), Gaps = 157/822 (19%)
Query: 44 GAPNYRQMLFMLLWSYADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEP 103
GAPN+RQ V+G+ P++ G + VL+ + Q +G + + ++ +REEP
Sbjct: 122 GAPNFRQA--------RGGYEVYGMGQPSLNGFKQVLQKL--QSNGHK-ECVFFCVREEP 170
Query: 104 VVYINGR----PFVLRDVGRPFSNLEYTGINRA-RVEQMEARLKEDIIMEAARFGNKILV 158
V+++ P+ R NL + + R E +E +++++ A GN V
Sbjct: 171 VLFLKLEDDFVPYTPRRKENLHENLH--DLEKGLRAENLELAIRKELHDFAQLSGNSYYV 228
Query: 159 TDELPDGQMVDQWEPVSCDS-VKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDIL 217
+++ + + C+ + +VY Y R+P+ + +P E FD
Sbjct: 229 YNDIEHFKDEPHSIIIHCEEDIHVTEEVYNRPVFLLPAYRYHRLPLPMDGAPLETQFDAF 288
Query: 218 VDKISQT-------DLN---TEVIFNCQMGRGRTTTGMVIATLVYLNRIGASGIPRTNSI 267
V+ + + D N ++F+CQ G GRT M++ TLV +R GA
Sbjct: 289 VNILRENPSLLLLHDANHPPPALLFSCQTGVGRTNLAMILGTLVLYHRKGACE------- 341
Query: 268 GRVFDSGSSVADNLPNSEEAIRRGEYAVIRSLTRVLEGGVEGKRQVDKVIDKCASMQNLR 327
+ + + + VI++ ++ G +VDK I+ C+ M +++
Sbjct: 342 ----------KQTISQDTNVLPKQRFQVIQNFINMVPNGEAIVDEVDKAIELCSEMHDIK 391
Query: 328 EAIATYRNSI--LRQPDEMKRQASLSFFVE----YLERYYFLICFAVYIHTERAALCSSS 381
A+ + + + + +++ ++ +F++ LERY++LI F Y+H E+ L +
Sbjct: 392 AALYECKKKLEGIGEGYQIQGSSTKEYFLKGTLHSLERYFYLITFNYYLH-EQYPLAFA- 449
Query: 382 FGHSSFADWMKARPELYSIIRRLLRRDPMGALGYANVKPSLMKMAESADGRPHEMGVVAA 441
SF+ WM +P +Y + +L + + S
Sbjct: 450 ---LSFSKWMCTQPWIYRL---------QASLNLSELTLS-------------------- 477
Query: 442 LRNGQVL--GSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDGIRSV 499
G+++ G++ ++ D +L E NFR V PVYG A P++ SV
Sbjct: 478 ---GELITKGTRVLVLDDRFSPDVLSTLKEM--NVANFRRVPKMPVYGTAQPSLKATGSV 532
Query: 500 IRRIGHFK-GCCPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERMEA 558
+ + K + W N+RE+ ++ N + F RE + + + E++E++EA
Sbjct: 533 LSYLTDAKRKYSNILWVNLREDVILEANEQIFTPREPDN-LEQQIAVPAASPEQLEKLEA 591
Query: 559 RLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFP-IKY 617
+ +L + + + + ++F ++ +T E+F +P + Y
Sbjct: 592 TVANHVLTSQKWLE---VYLEQEKQMKMF--------KTCRTMQEIFN-QHRSAYPGLVY 639
Query: 618 ARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLRI 674
R+PI D AP+ DFDML ++ S AFVFNC G+GRTTT VIA L
Sbjct: 640 RRIPIPDFCAPREQDFDMLLQSMKSMLAEDSSAAFVFNCHGGKGRTTTAMVIAVLTLWHF 699
Query: 675 DYGRPIRVLHEDVTHEELDSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLLW 734
+ I + ED D+ + GE ++
Sbjct: 700 N---SIPEITEDEIVSVPDAKYTKGE-----------------------------FEVVM 727
Query: 735 KITRLFDNGVKCREALDAIIDRCSALQ-----NIREAVL-HYRKVFNQQHVEPRVRMVAL 788
KI +L +G K ++ +D +D S ++RE ++ YR+V ++ + +R++ L
Sbjct: 728 KIVQLLPDGHKIKKEVDMALDSISETMTPMHYHLREIIICTYRQVKTAKNSK-EMRLLQL 786
Query: 789 SRGAEYLERYFRLIAFAAYLGSEAFDGFCGQGESRMTFKSWL 830
R +YLERY LI F AYL E D + + F +W+
Sbjct: 787 -RSLQYLERYIYLILFNAYLHLEKKDTW------QRPFSTWM 821
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 176/822 (21%), Positives = 324/822 (39%), Gaps = 170/822 (20%)
Query: 473 GAPNFREV-SGFPVYGVANPTIDGIRSVIRRI---GHFKGCCPVFWHNMREEPVIYINGK 528
GAPNFR+ G+ VYG+ P+++G + V++++ GH K C VF+ +REEPV+++ +
Sbjct: 122 GAPNFRQARGGYEVYGMGQPSLNGFKQVLQKLQSNGH-KEC--VFF-CVREEPVLFLKLE 177
Query: 529 ----PFVLREVERPYKNMLEY-TGIDRERVERMEARLKEDILREAERYGGAIMVIHETND 583
P+ R E ++N+ + G+ R E +E +++++ A+ G + V ++
Sbjct: 178 DDFVPYTPRRKENLHENLHDLEKGL---RAENLELAIRKELHDFAQLSGNSYYVYNDIEH 234
Query: 584 GQ------IFDAWE--HVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDM 635
+ I E HV+ E P+ + +Y R+P+ AP + FD
Sbjct: 235 FKDEPHSIIIHCEEDIHVTEEVYNRPVFLLPAY-------RYHRLPLPMDGAPLETQFDA 287
Query: 636 LAVNIASASKDT-----------AFVFNCQMGRGRTTTGTVIACLLKLRIDYGRPIRVLH 684
VNI + A +F+CQ G GRT ++ L + Y R
Sbjct: 288 F-VNILRENPSLLLLHDANHPPPALLFSCQTGVGRTNLAMILGTL----VLYHR------ 336
Query: 685 EDVTHEELDSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLLWKITRLFDNGV 744
GA +IS+ + + F + + + NG
Sbjct: 337 --------------------KGACEKQTISQDTNVLPKQRFQV-----IQNFINMVPNGE 371
Query: 745 KCREALDAIIDRCSALQNIREAVLHYRKVFN-----QQHVEPRVRMVALSRGAEYLERYF 799
+ +D I+ CS + +I+ A+ +K Q + L LERYF
Sbjct: 372 AIVDEVDKAIELCSEMHDIKAALYECKKKLEGIGEGYQIQGSSTKEYFLKGTLHSLERYF 431
Query: 800 RLIAFAAYLGSEAFDGFCGQGESRMTFKSWLRQRPEVQAMKWSIRIRPGRFLTVPEELRA 859
LI F YL + F ++F W+ +P + ++ S+ + LT+
Sbjct: 432 YLITFNYYLHEQYPLAFA------LSFSKWMCTQPWIYRLQASLNLSE---LTL------ 476
Query: 860 PQESQHGDAVMEAIVRARNGSVLGKGS---ILKMYFFPGQRTSSHIQIHGAPHVYKVDGY 916
+G ++ KG+ +L F P S ++ + +V
Sbjct: 477 ------------------SGELITKGTRVLVLDDRFSPD--VLSTLKEMNVANFRRVPKM 516
Query: 917 PVYSMATPTISGAKEMLAYLGAKTKTEGSFSQKVILTDLREEAVVYINGTPFVLRELNKP 976
PVY A P++ +L+YL T + +S ++ +LRE+ ++ N F RE +
Sbjct: 517 PVYGTAQPSLKATGSVLSYL---TDAKRKYS-NILWVNLREDVILEANEQIFTPREPDNL 572
Query: 977 VDTLKHVGITGPVVEHMEARLKEDILTEVRQSGGRMLLHREEYNPASNQSSVVGYWENIF 1036
+ + +E +EA + +LT Q + L +E+ +
Sbjct: 573 EQQIAVPAASPEQLEKLEATVANHVLTS--QKWLEVYLEQEK--------------QMKM 616
Query: 1037 ADDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAI-----QYCKDDSAGCYLF 1091
+T E++ + + YRRIP+ D D + +DS+ ++F
Sbjct: 617 FKTCRTMQEIFNQHRSAYPGLVYRRIPIPDFCAPREQDFDMLLQSMKSMLAEDSSAAFVF 676
Query: 1092 VSHTGFGGVAYAMAIICLRLDAEANFASKVPQSLVGPHLPLTYEENLPSWASDEEAHKMG 1151
H G G AM I L L +F S +P E+ + S + + G
Sbjct: 677 NCHGGKGRTTTAMVIAVLTL---WHFNS----------IPEITEDEIVS--VPDAKYTKG 721
Query: 1152 DYRDILNLTRVLVYGPQSKADVDTIIERCAGAG-----HLRDDILHYSEELKKFSNEYDE 1206
++ ++ + ++L G + K +VD ++ + HLR+ I+ ++K N +
Sbjct: 722 EFEVVMKIVQLLPDGHKIKKEVDMALDSISETMTPMHYHLREIIICTYRQVKTAKN--SK 779
Query: 1207 QRAYLMDIGIKALRRYFFLITFRSFLYCTSPAEIN--FKSWM 1246
+ L ++ L RY +LI F ++L+ F +WM
Sbjct: 780 EMRLLQLRSLQYLERYIYLILFNAYLHLEKKDTWQRPFSTWM 821
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 163/353 (46%), Gaps = 46/353 (13%)
Query: 65 VHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVLRDVGRPFSNL 124
V+G A P+++ +VL ++ K K +LW++LRE+ ++ N + F R+ +
Sbjct: 518 VYGTAQPSLKATGSVLSYLTDAKR-KYSNILWVNLREDVILEANEQIFTPREPDNLEQQI 576
Query: 125 EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLD 184
+ ++E++EA + N +L + + + + + + + + +
Sbjct: 577 AVPAASPEQLEKLEATV-----------ANHVLTSQKWLEVYLEQEKQMKMFKTCRTMQE 625
Query: 185 VYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRT 241
++ + + + Y R+P+ D +P+EQDFD+L+ + D + +FNC G+GRT
Sbjct: 626 IFNQHRSAYPGLVYRRIPIPDFCAPREQDFDMLLQSMKSMLAEDSSAAFVFNCHGGKGRT 685
Query: 242 TTGMVIATLVYLNRIGASGIPRTNSIGRVFDSGSSVADNLPNSEEAIRRGEYAVIRSLTR 301
TT MVIA L + + IP D SV D +GE+ V+ + +
Sbjct: 686 TTAMVIAVLTLWH---FNSIPEITE-----DEIVSVPD------AKYTKGEFEVVMKIVQ 731
Query: 302 VLEGGVEGKRQVDKVIDKCASMQ-----NLRE-AIATYRN-SILRQPDEMKRQASLSFFV 354
+L G + K++VD +D + +LRE I TYR + EM+ S +
Sbjct: 732 LLPDGHKIKKEVDMALDSISETMTPMHYHLREIIICTYRQVKTAKNSKEMRLLQLRS--L 789
Query: 355 EYLERYYFLICFAVYIHTERAALCSSSFGHSSFADWM---KARPELYSIIRRL 404
+YLERY +LI F Y+H E+ F+ WM ++ +Y ++ +L
Sbjct: 790 QYLERYIYLILFNAYLHLEK-----KDTWQRPFSTWMYEVASKAGVYEVLNQL 837
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/368 (21%), Positives = 142/368 (38%), Gaps = 52/368 (14%)
Query: 906 GAPHVYKV-DGYPVYSMATPTISGAKEMLAYLGAKTKTEGSF----SQKVILTDLREEAV 960
GAP+ + GY VY M P+++G K++L L + E F + V+ L ++ V
Sbjct: 122 GAPNFRQARGGYEVYGMGQPSLNGFKQVLQKLQSNGHKECVFFCVREEPVLFLKLEDDFV 181
Query: 961 VYINGTPFVLRELNKPVDTLKHVGITGPVVEHMEARLKEDILTEVRQSGGRMLLHREEYN 1020
Y TP L++ + L+ G E++E +++++ + SG ++ + +
Sbjct: 182 PY---TPRRKENLHENLHDLE----KGLRAENLELAIRKELHDFAQLSGNSYYVYNDIEH 234
Query: 1021 PASNQSSVVGYWENIFADDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDA--- 1077
S++ + E +D+ EVY Y R+PL + L + DA
Sbjct: 235 FKDEPHSIIIHCE----EDIHVTEEVYNRPVFLLPAYRYHRLPLPMDGAPLETQFDAFVN 290
Query: 1078 ---------IQYCKDDSAGCYLFVSHTGFGGVAYAMAIICLRLDAEANFASKVPQSLVGP 1128
+ + + LF TG G AM + L L K
Sbjct: 291 ILRENPSLLLLHDANHPPPALLFSCQTGVGRTNLAMILGTLVLYHRKGACEK-------- 342
Query: 1129 HLPLTYEENLPSWASDEEAHKMGDYRDILNLTRVLVYGPQSKADVDTIIERCAGAGHLRD 1188
+ + D ++ I N ++ G +VD IE C+ ++
Sbjct: 343 ----------QTISQDTNVLPKQRFQVIQNFINMVPNGEAIVDEVDKAIELCSEMHDIKA 392
Query: 1189 DILHYSEELKKFSNEYDEQ----RAYLMDIGIKALRRYFFLITFRSFLYCTSPA--EINF 1242
+ ++L+ Y Q + Y + + +L RYF+LITF +L+ P ++F
Sbjct: 393 ALYECKKKLEGIGEGYQIQGSSTKEYFLKGTLHSLERYFYLITFNYYLHEQYPLAFALSF 452
Query: 1243 KSWMDGRP 1250
WM +P
Sbjct: 453 SKWMCTQP 460
>sp|Q8JHZ8|PALD_CHICK Paladin OS=Gallus gallus GN=PALD1 PE=2 SV=2
Length = 868
Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 196/825 (23%), Positives = 347/825 (42%), Gaps = 160/825 (19%)
Query: 44 GAPNYRQMLFMLLWSYADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEP 103
GAPN+RQ V G+ P++ G + VL+ + Q++G + + ++ +REEP
Sbjct: 118 GAPNFRQA--------KGGYAVFGMGQPSLGGFKLVLQKL--QREGHK-ECVFFCVREEP 166
Query: 104 VVYI----NGRPFVLRDVGRPFSNLEYTGINRA-RVEQMEARLKEDIIMEAARFGNKILV 158
V+++ + P+ R NL + R RVE +E ++++I A V
Sbjct: 167 VLFLRVESDFVPYTPRGKENLHENLH--SLRRGLRVEDLELTIRKEIHDFAQLSEGVYYV 224
Query: 159 TDELPDGQMVDQWEPVSC---DSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFD 215
+++ + D+ V + + +VY Y R+P+ + +P E+ FD
Sbjct: 225 YNDIE--RFRDEPHTVRVQGEEDIHVTEEVYRRPIFLLPTYRYHRLPLPVDGAPLEEQFD 282
Query: 216 ILVDKISQTD---------LNTEVIFNCQMGRGRTTTGMVIATLVYLNRIGASGIPRTNS 266
+ + ++ ++F+CQ G GRT M + TL+ + GA+ P
Sbjct: 283 AFICFLRESSGLLLRDPSRPPPALLFSCQTGVGRTNLAMALGTLILHHHRGAAPKP---- 338
Query: 267 IGRVFDSGSSVADNLPNSEEAIRRGEYAVIRSLTRVLEGGVEGKRQVDKVIDKCASMQNL 326
+ P+ + R + VI+S ++ G + +VD VI C+ M ++
Sbjct: 339 -------------DPPHPAKMPPRARFRVIQSFIEMVPKGQQMVEEVDSVIASCSEMHDM 385
Query: 327 REAIATYRNSI--LRQPDEMKRQASLSFFVE----YLERYYFLICFAVYIHTERAALCSS 380
+EAI + + + + +++ ++ +F++ LERY++LI F Y+H +
Sbjct: 386 KEAIYESKKKLEGIGEDYQIQGNSTKEYFLQRTLQSLERYFYLIAFNYYLHEQYP----- 440
Query: 381 SFGHS-SFADWMKARPELYSIIRRLLRRDPMGALGYANVKPSLMKMAESADGRPHEMGVV 439
G + SF+ WM PELY + A E+ +
Sbjct: 441 -LGFALSFSRWMCRHPELYRL---------------------------QAIMNSSELTIT 472
Query: 440 AAL--RNGQVLGSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDGIR 497
L + +VL V+ CP + + NFR V P+YG A P+ +
Sbjct: 473 GDLITKGTRVL----VVDERFCPDVLSTV---KEMSVANFRRVPKMPIYGTAQPSSKALG 525
Query: 498 SVIRRIGHFK-GCCPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERM 556
SV+R + K + W ++REE V+ N + + LRE ++ E++E++
Sbjct: 526 SVLRYLTDAKRKHSRILWVSLREEVVLEGNEQIYTLRE-PGSLDQLIPVPVSTPEQLEKL 584
Query: 557 EARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIK 616
E+ LK D+L+ + + + ++F +S T E+F + +
Sbjct: 585 ESTLKGDLLKSQKWLE---VYLEAEKQMKMF--------KSCLTTQEIFNQHKSTCQGLT 633
Query: 617 YARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 673
Y R+PI D APK DFD L + SA TAFVFNC GRGRTTT VIA L
Sbjct: 634 YRRIPIPDFCAPKEQDFDRLLEAMKSALAEDSQTAFVFNCASGRGRTTTAMVIAVLTLWH 693
Query: 674 IDYGRPIRVLHEDVTHEELDSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLL 733
+ G P +++ EE+ S + G + ++
Sbjct: 694 FN-GIP------EMSEEEIVSVPDAKYTKG-------------------------EFEVV 721
Query: 734 WKITRLFDNGVKCREALDAIIDRCSALQ-----NIREAVL-HYRKVFNQQHVEPRVRMVA 787
K+ +L +G + ++ +D +D S ++RE ++ YR+ + + + R +
Sbjct: 722 MKVVQLLPDGHRMKKEVDMALDTVSETMTPMHYHLREIIICTYRQ--GRSGKDEQERRLL 779
Query: 788 LSRGAEYLERYFRLIAFAAYLGSEAFDGFCGQGESRMTFKSWLRQ 832
R +YLERY LI F +YL E D + + F W+R+
Sbjct: 780 RLRSLQYLERYIYLILFNSYLHLEKKDSW------QRPFSLWMRE 818
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 186/821 (22%), Positives = 320/821 (38%), Gaps = 169/821 (20%)
Query: 473 GAPNFREVSG-FPVYGVANPTIDGIRSVIRRI---GHFKGCCPVFWHNMREEPVIYINGK 528
GAPNFR+ G + V+G+ P++ G + V++++ GH K C VF+ +REEPV+++ +
Sbjct: 118 GAPNFRQAKGGYAVFGMGQPSLGGFKLVLQKLQREGH-KEC--VFF-CVREEPVLFLRVE 173
Query: 529 PFVLREVERPYKNMLEYTGIDRE--RVERMEARLKEDILREAERYGGAIMVIHETNDGQI 586
+ R +N+ E R RVE +E ++++I A+ G V ND +
Sbjct: 174 SDFVPYTPRGKENLHENLHSLRRGLRVEDLELTIRKEIHDFAQLSEGVYYVY---NDIER 230
Query: 587 FDAWEHV----SSESVQTPLEVFKCLEDDGFPI------KYARVPITDGKAPKTSDFDML 636
F H E + EV++ PI +Y R+P+ AP FD
Sbjct: 231 FRDEPHTVRVQGEEDIHVTEEVYR------RPIFLLPTYRYHRLPLPVDGAPLEEQFDAF 284
Query: 637 AVNIASAS---------KDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRPIRVLHEDV 687
+ +S A +F+CQ G GRT + L +LH
Sbjct: 285 ICFLRESSGLLLRDPSRPPPALLFSCQTGVGRTNLAMALGTL------------ILHH-- 330
Query: 688 THEELDSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLLWKITRLFDNGVKCR 747
G +K+ + R ++ + G +
Sbjct: 331 -------------HRGAAPKPDPPHPAKMPPRARFR--------VIQSFIEMVPKGQQMV 369
Query: 748 EALDAIIDRCSALQNIREAVLHYRKVF-----NQQHVEPRVRMVALSRGAEYLERYFRLI 802
E +D++I CS + +++EA+ +K + Q + L R + LERYF LI
Sbjct: 370 EEVDSVIASCSEMHDMKEAIYESKKKLEGIGEDYQIQGNSTKEYFLQRTLQSLERYFYLI 429
Query: 803 AFAAYLGSEAFDGFCGQGESRMTFKSWLRQRPEVQAMKWSIRIRPGRFLTVPEELRAPQE 862
AF YL + GF ++F W+ + PE+ ++
Sbjct: 430 AFNYYLHEQYPLGFA------LSFSRWMCRHPELYRLQ---------------------- 461
Query: 863 SQHGDAVMEAIVRARNGSVLGKGS---ILKMYFFPGQRTSSHIQIHGAPHVYKVDGYPVY 919
A+M + G ++ KG+ ++ F P S ++ + +V P+Y
Sbjct: 462 -----AIMNSSELTITGDLITKGTRVLVVDERFCPD--VLSTVKEMSVANFRRVPKMPIY 514
Query: 920 SMATPTISGAKEMLAYL-GAKTKTEGSFSQKVILTDLREEAVVYINGTPFVLRELNKPVD 978
A P+ +L YL AK K +++ LREE V+ N + LRE +D
Sbjct: 515 GTAQPSSKALGSVLRYLTDAKRK-----HSRILWVSLREEVVLEGNEQIYTLREPGS-LD 568
Query: 979 TLKHVGITGP-VVEHMEARLKEDILTEVRQSGGRMLLHREEYNPASNQSSVVGYWENIFA 1037
L V ++ P +E +E+ LK D+L + E Y A Q +
Sbjct: 569 QLIPVPVSTPEQLEKLESTLKGDLLKSQKW--------LEVYLEAEKQMKMF-------- 612
Query: 1038 DDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAI-----QYCKDDSAGCYLFV 1092
T E++ + +TYRRIP+ D D + +DS ++F
Sbjct: 613 KSCLTTQEIFNQHKSTCQGLTYRRIPIPDFCAPKEQDFDRLLEAMKSALAEDSQTAFVFN 672
Query: 1093 SHTGFGGVAYAMAIICLRLDAEANFASKVPQSLVGPHLPLTYEENLPSWASDEEAHKMGD 1152
+G G AM I L L +F +P EE + S + + G+
Sbjct: 673 CASGRGRTTTAMVIAVLTL---WHFNG----------IPEMSEEEIVS--VPDAKYTKGE 717
Query: 1153 YRDILNLTRVLVYGPQSKADVDTIIERCAGAG-----HLRDDILHYSEELKKFSNEYDEQ 1207
+ ++ + ++L G + K +VD ++ + HLR+ I+ + + S + +++
Sbjct: 718 FEVVMKVVQLLPDGHRMKKEVDMALDTVSETMTPMHYHLREIIICTYRQGR--SGKDEQE 775
Query: 1208 RAYLMDIGIKALRRYFFLITFRSFLYCTSPAEIN--FKSWM 1246
R L ++ L RY +LI F S+L+ F WM
Sbjct: 776 RRLLRLRSLQYLERYIYLILFNSYLHLEKKDSWQRPFSLWM 816
>sp|Q803E0|PALD_DANRE Paladin OS=Danio rerio GN=pald1 PE=2 SV=1
Length = 860
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 195/819 (23%), Positives = 344/819 (42%), Gaps = 147/819 (17%)
Query: 44 GAPNYRQMLFMLLWSYADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEP 103
GAPN+RQ ++G+ ++ G + VL+ + Q G + +V++ LREEP
Sbjct: 110 GAPNFRQS--------GGGFPLYGMGQTSLGGFKRVLESL--QTRGHQ-EVIFFCLREEP 158
Query: 104 VVYINGR----PFVLRDVGRPFSNLEYTGINR-ARVEQMEARLKEDIIMEAARFGNKILV 158
VV+++ + P+ R NL++ + R A E +E +++++ A N V
Sbjct: 159 VVFLHLQEDFLPYTPRRKENLHENLQH--LQRGASSEDLELTIRKELHDFAKLNDNMFYV 216
Query: 159 TDELPDGQMVDQWEPV-SCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDIL 217
+++ + Q + S + + +VY + Y R+P+ E +P E+ FD
Sbjct: 217 YNDIEHLKGEPQKICICSEEDIHITEEVYRRPRFTMPAYRYYRLPLPMEGAPMEEQFDAF 276
Query: 218 VDKISQT---DLNTE-------VIFNCQMGRGRTTTGMVIATLVYLNRIGASGIPRTNSI 267
V + + LN + ++F+CQ+G GRT G+++ TLV ++ +
Sbjct: 277 VKVLRENPSLSLNRDASRLLPALLFSCQVGVGRTNLGLILGTLVMMH------------L 324
Query: 268 GRVFDSGSSVADNLPNSEEAIRRGEYAVIRSLTRVLEGGVEGKRQVDKVIDKCASMQNLR 327
R ++ A+ E I ++ VI SL L G E +V++ ID C+ M ++R
Sbjct: 325 TRTTAEKTTPAEEEVKDEHKI---QFRVIESLIGKLPKGQEVMEEVNRAIDLCSEMHDIR 381
Query: 328 EAIATYRNSILRQPDEMKRQASLS--FF----VEYLERYYFLICFAVYIHTERAALCSSS 381
E+I + + ++ + Q S + +F ++ LERY++LI F Y+H E+ L +
Sbjct: 382 ESIYENKQKLEGIGEDYQTQGSSTKDYFLHGALQSLERYFYLIVFNAYLH-EQYPLAFA- 439
Query: 382 FGHSSFADWMKARPELYSIIRRLLRRDPMGALGYANVKPSLMKMAESADGRPHEMGVVAA 441
SF+ W+ + +Y + L M +S P ++
Sbjct: 440 ---CSFSQWLCSNAWIYRL---------------------LSCMNQSELRAPADL----V 471
Query: 442 LRNGQVLGSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDGIRSVIR 501
+ +VL + L D + + NFR V +YG+A PT + V+
Sbjct: 472 TKGARVLVADEYLAPDVLSTIKEMKV-------ANFRRVPKMSIYGMAQPTSEAASVVLA 524
Query: 502 RIGHFK-GCCPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERMEARL 560
+ K V W N+++E ++ N + F RE R + + E ++ +EA L
Sbjct: 525 YLCDEKRKHSSVLWVNLQDELLLEANNQIFSPREPTR-VEQCIRVCSAQPEDIQSLEASL 583
Query: 561 KEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARV 620
K +L A + + + E I +S T E+F L+ ++Y R+
Sbjct: 584 KAQLL--ASQQWLEVTLEQEKQMKMI---------KSCSTVQEIFNQLKSSHHALQYRRI 632
Query: 621 PITDGKAPKTSDFD-MLAVNIASASKD--TAFVFNCQMGRGRTTTGTVIACLLKLRIDYG 677
P + AP FD +L V A+ ++D +AFVFNC G+ RTTT VIA L + G
Sbjct: 633 PFPECSAPSEEGFDQLLDVMKATLAEDSLSAFVFNCSNGKARTTTAMVIATLTLWHFN-G 691
Query: 678 RPIRVLHEDVTHEELDSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLLWKIT 737
P ED D+ + GE ++ K+
Sbjct: 692 FP--EFCEDEIVSVPDAKYTKGE-----------------------------FEVVMKLV 720
Query: 738 RLFDNGVKCREALDAIIDRCSALQNIREAVLHYRKVFNQQHVEPRV----RMVALSRGAE 793
RL +G + + +DA +D S + + H R++ + + R + +
Sbjct: 721 RLLPDGQRMKREVDAALDSVS--ETMTPLHYHLREIIICTYRQIRSCKSDAELLALQALL 778
Query: 794 YLERYFRLIAFAAYLGSEAFDGFCGQGESRMTFKSWLRQ 832
YLERY LI + +YL E D + R F W++Q
Sbjct: 779 YLERYIYLILYNSYLHLEKRDSW------RRPFSVWMQQ 811
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 173/805 (21%), Positives = 312/805 (38%), Gaps = 164/805 (20%)
Query: 473 GAPNFREVSG-FPVYGVANPTIDGIRSVIRRIGHFKGCCPVFWHNMREEPVIYINGK--- 528
GAPNFR+ G FP+YG+ ++ G + V+ + +G V + +REEPV++++ +
Sbjct: 110 GAPNFRQSGGGFPLYGMGQTSLGGFKRVLESL-QTRGHQEVIFFCLREEPVVFLHLQEDF 168
Query: 529 -PFVLREVERPYKNMLEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDGQIF 587
P+ R E ++N+ + ++R + ++ E + A + N ++
Sbjct: 169 LPYTPRRKENLHENL--------QHLQRGASSEDLELTIRKELHDFAKL---NDNMFYVY 217
Query: 588 DAWEHVSSESVQTPLEVFKCLEDD-------------GFP-IKYARVPITDGKAPKTSDF 633
+ EH+ E P ++ C E+D P +Y R+P+ AP F
Sbjct: 218 NDIEHLKGE----PQKICICSEEDIHITEEVYRRPRFTMPAYRYYRLPLPMEGAPMEEQF 273
Query: 634 DM----------LAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRPIRVL 683
D L++N ++ A +F+CQ+G GRT G ++ L+ + + R
Sbjct: 274 DAFVKVLRENPSLSLNRDASRLLPALLFSCQVGVGRTNLGLILGTLVMMHL-----TRTT 328
Query: 684 HEDVTHEELDSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLLWKITRLFDNG 743
E T E +V+ E K + I+ L+ K+ + G
Sbjct: 329 AEKTTPAE----------------------EEVKDEHKIQFRVIES--LIGKLPK----G 360
Query: 744 VKCREALDAIIDRCSALQNIREAVLHYRKVF-----NQQHVEPRVRMVALSRGAEYLERY 798
+ E ++ ID CS + +IRE++ ++ + Q + L + LERY
Sbjct: 361 QEVMEEVNRAIDLCSEMHDIRESIYENKQKLEGIGEDYQTQGSSTKDYFLHGALQSLERY 420
Query: 799 FRLIAFAAYLGSEAFDGFCGQGESRMTFKSWLRQRPEVQAMKWSIRIRPGRFLTVPEELR 858
F LI F AYL + F +F WL + W R+ ELR
Sbjct: 421 FYLIVFNAYLHEQYPLAFA------CSFSQWL------CSNAWIYRLLS---CMNQSELR 465
Query: 859 APQESQHGDAVMEAIVRARNGSVLGKGSILKMYFFPGQRTSSHIQIHGAPHVYKVDGYPV 918
AP A + + VL + Y P S I+ + +V +
Sbjct: 466 AP-----------ADLVTKGARVL----VADEYLAPD--VLSTIKEMKVANFRRVPKMSI 508
Query: 919 YSMATPTISGAKEMLAYLGAKTKTEGSFSQKVILTDLREEAVVYINGTPFVLRELNKPVD 978
Y MA PT A +LAYL + + S V+ +L++E ++ N F RE +
Sbjct: 509 YGMAQPTSEAASVVLAYLCDEKRKHSS----VLWVNLQDELLLEANNQIFSPREPTRVEQ 564
Query: 979 TLKHVGITGPVVEHMEARLKEDILTEVRQSGGRMLLHREEYNPASNQSSVVGYWENIFAD 1038
++ ++ +EA LK +L Q + L +E+ S V
Sbjct: 565 CIRVCSAQPEDIQSLEASLKAQLLAS--QQWLEVTLEQEKQMKMIKSCSTV--------- 613
Query: 1039 DVKTPAEVYAALQDEGYNITYRRIPLTR----ERDALASDIDAIQ-YCKDDSAGCYLFVS 1093
E++ L+ + + YRRIP + +D ++ +DS ++F
Sbjct: 614 -----QEIFNQLKSSHHALQYRRIPFPECSAPSEEGFDQLLDVMKATLAEDSLSAFVFNC 668
Query: 1094 HTGFGGVAYAMAIICLRLDAEANFASKVPQSLVGPHLPLTYEENLPSWASDEEAHKMGDY 1153
G AM I L L F +V ++P + + G++
Sbjct: 669 SNGKARTTTAMVIATLTLWHFNGFPEFCEDEIV----------SVP-----DAKYTKGEF 713
Query: 1154 RDILNLTRVLVYGPQSKADVDTIIERCAGAG-----HLRDDILHYSEELKKFSNEYDEQR 1208
++ L R+L G + K +VD ++ + HLR+ I+ +++ ++ +
Sbjct: 714 EVVMKLVRLLPDGQRMKREVDAALDSVSETMTPLHYHLREIIICTYRQIRSCKSDAELLA 773
Query: 1209 AYLMDIGIKALRRYFFLITFRSFLY 1233
+ L RY +LI + S+L+
Sbjct: 774 L----QALLYLERYIYLILYNSYLH 794
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 151/367 (41%), Gaps = 54/367 (14%)
Query: 905 HGAPHVYKVDG-YPVYSMATPTISGAKEMLAYLGAKTKTEGSFSQKVILTDLREEAVVYI 963
+GAP+ + G +P+Y M ++ G K +L L +T G Q+VI LREE VV++
Sbjct: 109 YGAPNFRQSGGGFPLYGMGQTSLGGFKRVLESL----QTRGH--QEVIFFCLREEPVVFL 162
Query: 964 ----NGTPFVLRELNKPVDTLKHVGITGPVVEHMEARLKEDILTEVRQSGGRMLLHRE-E 1018
+ P+ R + L+H+ G E +E +++++ + + ++ + E
Sbjct: 163 HLQEDFLPYTPRRKENLHENLQHLQ-RGASSEDLELTIRKELHDFAKLNDNMFYVYNDIE 221
Query: 1019 YNPASNQSSVVGYWENIFADDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDA- 1077
+ Q + E D+ EVY + Y R+PL E + DA
Sbjct: 222 HLKGEPQKICICSEE-----DIHITEEVYRRPRFTMPAYRYYRLPLPMEGAPMEEQFDAF 276
Query: 1078 ---------IQYCKDDS--AGCYLFVSHTGFGGVAYAMAIICLRLDAEANFASKVPQSLV 1126
+ +D S LF G G + + +LV
Sbjct: 277 VKVLRENPSLSLNRDASRLLPALLFSCQVGVGRTNLGLIL----------------GTLV 320
Query: 1127 GPHLP-LTYEENLPSWASDEEAHKMGDYRDILNLTRVLVYGPQSKADVDTIIERCAGAGH 1185
HL T E+ P+ ++ HK+ +R I +L L G + +V+ I+ C+
Sbjct: 321 MMHLTRTTAEKTTPAEEEVKDEHKI-QFRVIESLIGKLPKGQEVMEEVNRAIDLCSEMHD 379
Query: 1186 LRDDILHYSEELKKFSNEYDEQ----RAYLMDIGIKALRRYFFLITFRSFLYCTSPAEI- 1240
+R+ I ++L+ +Y Q + Y + +++L RYF+LI F ++L+ P
Sbjct: 380 IRESIYENKQKLEGIGEDYQTQGSSTKDYFLHGALQSLERYFYLIVFNAYLHEQYPLAFA 439
Query: 1241 -NFKSWM 1246
+F W+
Sbjct: 440 CSFSQWL 446
>sp|P70261|PALD_MOUSE Paladin OS=Mus musculus GN=Pald1 PE=1 SV=1
Length = 859
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 197/824 (23%), Positives = 327/824 (39%), Gaps = 171/824 (20%)
Query: 44 GAPNYRQMLFMLLWSYADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEP 103
GAPN+RQ+ L V G+ P++ G R VL+ + Q DG + + + +REEP
Sbjct: 122 GAPNFRQV--------RGGLPVFGMGQPSLLGFRRVLQKL--QTDGLK-ECIIFCVREEP 170
Query: 104 VVYINGR----PFVLRDVGRPFSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVT 159
VV++ + RD NL + E +E ++++I A N V
Sbjct: 171 VVFLRAEEDFVSYTPRDKESLHENLRDPSPG-VKAENLELAIQKEIHDFAQLRDNVYHVY 229
Query: 160 DELPDGQMVDQWEPVSC-----DSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDF 214
D + EP + D V +V++ + Y +P+ ++ P E F
Sbjct: 230 HNTEDLR----GEPHTVAIRGEDGVCVTEEVFKRPLLLQPTYRYHHLPLPEQGPPLEAQF 285
Query: 215 DILVDKISQTDLN----------TEVIFNCQMGRGRTTTGMVIATLVYLNRIGASGIPRT 264
D V + +T ++F+CQ G GRT GMV+ TLV + RT
Sbjct: 286 DAFVSVLRETPSLLPLRDNHGPLPALLFSCQSGVGRTNLGMVLGTLVMFHH------SRT 339
Query: 265 NSIGRVFDSGSSVADNLPNSEEAIRRGEYAVIRSLTRVLEGGVEGKRQVDKVIDKCASMQ 324
S ++ S +A LP ++ VI+ + G + +VD+ I CA +
Sbjct: 340 TS---QLEAASPLAKPLPME-------QFQVIQGFICKVPQGKKMVEEVDRAISACAELH 389
Query: 325 NLREAIATYRNSI------LRQPDEMKRQASLSFFVEYLERYYFLICFAVYIHTERAALC 378
+L+E + + + R + +QA + LE Y++L+ F Y+H E+ L
Sbjct: 390 DLKEEVLKNQRRLESFRPESRGQECGSQQAVQQRALWSLELYFYLLLFNYYLH-EQYPLA 448
Query: 379 SSSFGHSSFADWMKARPELYSIIRRLLRRDPMGALGYANVKPSLMKMAESADGRPHEMGV 438
+ SF+ W+ PELY ++ E+
Sbjct: 449 FA----LSFSRWLCTHPELYRLLV--------------------------------ELNS 472
Query: 439 VAALRNGQVLGSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDGIRS 498
V L G ++ + L++D S ++ A NFR V P+YG A P+ + +
Sbjct: 473 VGPLVPGDLIAKGS-LEADDLVSLDALSTVREMDVA-NFRRVPRMPIYGTAQPSAKALGN 530
Query: 499 VIRRIGHFK-GCCPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERME 557
++ + K V W +REE V+ +G L + E + +E
Sbjct: 531 ILAYLSDAKRKLRQVVWIFLREEVVLECDGHTHSLWP---------PGPALAPEHLVALE 581
Query: 558 ARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKY 617
A+LK + A + ++ F + T EVF + + Y
Sbjct: 582 AQLKAHL--------SAPVPNTKSPTAPRF--------QKCLTTQEVFSQHQGACLGLTY 625
Query: 618 ARVPITDGKAPKTSDFDMLAVNI-ASASKD--TAFVFNCQMGRGRTTTGTVIACLLKLRI 674
R+P+ D AP+ DFD L + A+ +KD T FVF+C G+GRTTT V+A L I
Sbjct: 626 CRIPVPDFCAPREEDFDRLLEALRAALTKDPGTGFVFSCLSGQGRTTTAMVVAVLACWHI 685
Query: 675 DYGRPIRVLHEDVTHEELDSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLLW 734
G P +V EEL S + F + ++
Sbjct: 686 G-GCP------EVGEEELVSVPDA-------------------------KFTKGEFQVVM 713
Query: 735 KITRLFDNGVKCREALDAIIDRCSALQ-----NIREAVLH-YRKVFNQQHVEPRVRMVAL 788
K+ +L +G ++ +DA +D S ++RE ++ YR+ + + R+
Sbjct: 714 KVVQLLPDGHHVKKEVDAALDIVSETMTPMHYHLREIIISTYRQAKATKEAQEAQRLQL- 772
Query: 789 SRGAEYLERYFRLIAFAAYLGSEAFDGFCGQGESRMTFKSWLRQ 832
R +YLERY LI F AYL E + + F +W+R+
Sbjct: 773 -RSLQYLERYIYLILFNAYLRLEKTSSW------QRPFSTWMRE 809
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 158/353 (44%), Gaps = 59/353 (16%)
Query: 65 VHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVLRDVGRPFSNL 124
++G A P+ + + N+L ++ K R QV+WI LREE V+ +G L G +
Sbjct: 517 IYGTAQPSAKALGNILAYLSDAKRKLR-QVVWIFLREEVVLECDGHTHSLWPPGPALAPE 575
Query: 125 EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLD 184
+ + A + A RF K L T E
Sbjct: 576 HLVALEAQLKAHLSAPVPNTKSPTAPRF-QKCLTTQE----------------------- 611
Query: 185 VYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRT 241
V+ + Q + Y R+PV D +P+E+DFD L++ + D T +F+C G+GRT
Sbjct: 612 VFSQHQGACLGLTYCRIPVPDFCAPREEDFDRLLEALRAALTKDPGTGFVFSCLSGQGRT 671
Query: 242 TTGMVIATLVYLNRIGASGIPRTNSIGRVFDSGSSVADNLPNSEEAIRRGEYAVIRSLTR 301
TT MV+A L + IG + G ++P+++ +GE+ V+ + +
Sbjct: 672 TTAMVVAVLACWH------------IGGCPEVGEEELVSVPDAK--FTKGEFQVVMKVVQ 717
Query: 302 VLEGGVEGKRQVDKVIDKCASMQ-----NLRE-AIATYRNS-ILRQPDEMKRQASLSFFV 354
+L G K++VD +D + +LRE I+TYR + ++ E +R S +
Sbjct: 718 LLPDGHHVKKEVDAALDIVSETMTPMHYHLREIIISTYRQAKATKEAQEAQRLQLRS--L 775
Query: 355 EYLERYYFLICFAVYIHTERAALCSSSFGHSSFADWMK---ARPELYSIIRRL 404
+YLERY +LI F Y+ E+ +S F+ WM+ + +Y I+ +L
Sbjct: 776 QYLERYIYLILFNAYLRLEK-----TSSWQRPFSTWMREVATKAGIYEILNQL 823
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 177/828 (21%), Positives = 301/828 (36%), Gaps = 196/828 (23%)
Query: 473 GAPNFREV-SGFPVYGVANPTIDGIRSVIRRIGHFKGCCPVFWHNMREEPVIYINGK--- 528
GAPNFR+V G PV+G+ P++ G R V++++ G +REEPV+++ +
Sbjct: 122 GAPNFRQVRGGLPVFGMGQPSLLGFRRVLQKL-QTDGLKECIIFCVREEPVVFLRAEEDF 180
Query: 529 -PFVLREVERPYKNMLEYT-GIDRERVERMEARLKEDILREAERYGGAIMVIHETNDGQI 586
+ R+ E ++N+ + + G+ + E +E ++++I A+ V H T D
Sbjct: 181 VSYTPRDKESLHENLRDPSPGV---KAENLELAIQKEIHDFAQLRDNVYHVYHNTED--- 234
Query: 587 FDAWEHVSS----ESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIAS 642
H + + V EVFK +Y +P+ + P + FD +
Sbjct: 235 LRGEPHTVAIRGEDGVCVTEEVFKRPLLLQPTYRYHHLPLPEQGPPLEAQFDAFVSVLRE 294
Query: 643 AS-----KDT-----AFVFNCQMGRGRTTTGTVIACLLKLRIDYGRPIRVLHEDVTHEEL 692
+D A +F+CQ G GRT G V+ L+ + H T +L
Sbjct: 295 TPSLLPLRDNHGPLPALLFSCQSGVGRTNLGMVLGTLV-----------MFHHSRTTSQL 343
Query: 693 DSGSSSGEENGGNGAASTSSISKVRSEGKGRAFGIDDILLLWKITRLFDNGVKCREALDA 752
++ S + ++ ++ G K E +D
Sbjct: 344 EAASP-----------------------LAKPLPMEQFQVIQGFICKVPQGKKMVEEVDR 380
Query: 753 IIDRCSALQNIREAVLHYRKVF-------------NQQHVEPRVRMVALSRGAEYLERYF 799
I C+ L +++E VL ++ +QQ V+ R L Y
Sbjct: 381 AISACAELHDLKEEVLKNQRRLESFRPESRGQECGSQQAVQQRALWSLELYFYLLLFNY- 439
Query: 800 RLIAFAAYLGSEAFDGFCGQGESRMTFKSWLRQRPEVQAMKWSIR-IRPGRFLTVPEELR 858
YL + F ++F WL PE+ + + + P VP +L
Sbjct: 440 -------YLHEQYPLAFA------LSFSRWLCTHPELYRLLVELNSVGP----LVPGDLI 482
Query: 859 APQESQHGDAV-MEAIVRARNGSVLGKGSILKMYFFPGQRTSSHIQIHGAPHVYKVDGYP 917
A + D V ++A+ R V + +M P
Sbjct: 483 AKGSLEADDLVSLDALSTVREMDVANFRRVPRM--------------------------P 516
Query: 918 VYSMATPTISGAKEMLAYLG-AKTKTEGSFSQKVILTDLREEAVVYINGTPFVLRELNKP 976
+Y A P+ +LAYL AK K ++V+ LREE V+ +G L
Sbjct: 517 IYGTAQPSAKALGNILAYLSDAKRKL-----RQVVWIFLREEVVLECDGHTHSLWP---- 567
Query: 977 VDTLKHVGITGPVV--EHM---EARLKEDILTEVRQSGGRMLLHREEYNPASNQSSVVGY 1031
GP + EH+ EA+LK + V P + + +
Sbjct: 568 ---------PGPALAPEHLVALEAQLKAHLSAPV---------------PNTKSPTAPRF 603
Query: 1032 WENIFADDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAI------QYCKDDS 1085
+ + T EV++ Q +TY RIP+ D D + KD
Sbjct: 604 QKCL------TTQEVFSQHQGACLGLTYCRIPVPDFCAPREEDFDRLLEALRAALTKDPG 657
Query: 1086 AGCYLFVSHTGFGGVAYAMAIICLRLDAEANFASKVPQSLVGPHLPLTYEENLPSWASDE 1145
G ++F +G G AM + L P EE L S D
Sbjct: 658 TG-FVFSCLSGQGRTTTAMVVAVLACWHIGG-------------CPEVGEEELVS-VPDA 702
Query: 1146 EAHKMGDYRDILNLTRVLVYGPQSKADVDTIIERCAGAG-----HLRDDILHYSEELKKF 1200
+ K G+++ ++ + ++L G K +VD ++ + HLR+ I+ + K
Sbjct: 703 KFTK-GEFQVVMKVVQLLPDGHHVKKEVDAALDIVSETMTPMHYHLREIIISTYRQAKAT 761
Query: 1201 SNEYDEQRAYLMDIGIKALRRYFFLITFRSFLYC--TSPAEINFKSWM 1246
+ QR L + + L RY +LI F ++L TS + F +WM
Sbjct: 762 KEAQEAQRLQLRSL--QYLERYIYLILFNAYLRLEKTSSWQRPFSTWM 807
>sp|Q79LY0|HOPD2_PSESM Effector protein hopD2 OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=hopD2 PE=1 SV=1
Length = 468
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 70 IPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVLRDVGRPFSNLEYTGI 129
I ++E ++++ +G G + VL LREE +NG P LR +++
Sbjct: 231 ISSVEQVKSIRAALG----GGPLTVL--DLREESHAIVNGLPITLR------GPMDWAN- 277
Query: 130 NRARVEQMEARLKED-IIMEAARFGNKILVTDELPDGQMVD-QWEPVSCDSVKAPLDVYE 187
A + Q++ +E +I E R + LV G+ + Q + +V++ +V
Sbjct: 278 --AGLSQVDGAARESAMITELKRTKSLTLVDANYVKGKKSNPQTTELKNLNVRSEREVVT 335
Query: 188 ELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMV 246
E Y RV +TD P + D LVD + N ++ +C GRGRTTT M+
Sbjct: 336 EAGAT-----YRRVAITDHNRPSPEATDELVDIMRHCLQANESLVVHCNGGRGRTTTAMI 390
Query: 247 IATLV 251
+ ++
Sbjct: 391 MVDML 395
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 500 IRRIGHFKGCCPVFWHNMREEPVIYINGKPFVLR-EVERPYKNMLEYTGIDRERVERME- 557
++ I G P+ ++REE +NG P LR ++ + + G RE E
Sbjct: 237 VKSIRAALGGGPLTVLDLREESHAIVNGLPITLRGPMDWANAGLSQVDGAARESAMITEL 296
Query: 558 ARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKY 617
R K L +A G + ++ Q + + + +V++ EV + + G Y
Sbjct: 297 KRTKSLTLVDANYVKG------KKSNPQTTE----LKNLNVRSEREV---VTEAG--ATY 341
Query: 618 ARVPITDGKAPKTSDFDMLAVNIA--SASKDTAFVFNCQMGRGRTTTGTVIACLLK 671
RV ITD P D L V+I + + V +C GRGRTTT ++ +LK
Sbjct: 342 RRVAITDHNRPSPEATDEL-VDIMRHCLQANESLVVHCNGGRGRTTTAMIMVDMLK 396
>sp|Q57668|Y215_METJA Uncharacterized protein MJ0215 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0215 PE=4 SV=1
Length = 159
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 201 VPVTDEKSPKEQDFDILVDKIS-QTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRI 256
VP+ D P +D D++VD I EV+ +C G GR TG V+A LN I
Sbjct: 70 VPIEDYGIPTVEDMDLIVDFIKYHVSKEKEVVVSCIGGHGR--TGTVLAVWAGLNGI 124
>sp|A8NZY7|DUS3_COPC7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=DUS3 PE=3 SV=1
Length = 676
Score = 34.3 bits (77), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 699 GEENGGNGAASTSSISKVRSEG-----KGRAFGI--DDILLLWKITR--LFDNGVKCR 747
GE++ GNG S +++K + + KGR FG D++ L WK+ + D G CR
Sbjct: 43 GEDDSGNGQPSRRALAKAQKKARQGANKGRRFGKVRDEVELCWKVANGAICDFGTSCR 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,390,676
Number of Sequences: 539616
Number of extensions: 21696699
Number of successful extensions: 52834
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 52719
Number of HSP's gapped (non-prelim): 48
length of query: 1263
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1134
effective length of database: 121,958,995
effective search space: 138301500330
effective search space used: 138301500330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)