Query 000835
Match_columns 1263
No_of_seqs 292 out of 397
Neff 5.6
Searched_HMMs 46136
Date Tue Apr 2 00:18:48 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14566 PTPlike_phytase: Inos 100.0 2.8E-41 6.1E-46 347.1 -1.0 145 97-252 1-149 (149)
2 PF14566 PTPlike_phytase: Inos 100.0 1.7E-40 3.8E-45 341.2 -1.1 146 515-671 1-149 (149)
3 PTZ00242 protein tyrosine phos 98.0 9.8E-06 2.1E-10 85.7 6.3 58 195-253 61-123 (166)
4 COG2453 CDC14 Predicted protei 97.8 2.1E-05 4.6E-10 84.2 5.8 59 195-253 72-131 (180)
5 PTZ00242 protein tyrosine phos 97.8 6.1E-05 1.3E-09 79.7 8.8 61 603-668 55-120 (166)
6 PTZ00393 protein tyrosine phos 97.7 4.8E-05 1E-09 84.2 6.4 57 195-252 137-194 (241)
7 PTZ00393 protein tyrosine phos 97.6 0.00011 2.4E-09 81.5 6.5 50 614-663 137-187 (241)
8 COG2453 CDC14 Predicted protei 97.5 0.00011 2.3E-09 78.8 5.8 61 613-673 71-132 (180)
9 PF05706 CDKN3: Cyclin-depende 97.4 0.00023 5E-09 75.0 5.6 71 596-673 87-158 (168)
10 smart00195 DSPc Dual specifici 97.4 0.00031 6.6E-09 71.2 6.1 59 195-253 44-104 (138)
11 PF00782 DSPc: Dual specificit 97.3 0.00027 5.8E-09 71.0 5.3 59 195-253 39-99 (133)
12 KOG1720 Protein tyrosine phosp 97.3 0.00018 3.9E-09 77.7 3.9 56 195-250 115-170 (225)
13 smart00012 PTPc_DSPc Protein t 97.3 0.00033 7.1E-09 66.5 5.3 57 198-254 5-66 (105)
14 smart00404 PTPc_motif Protein 97.3 0.00033 7.1E-09 66.5 5.3 57 198-254 5-66 (105)
15 PLN02727 NAD kinase 97.3 0.00074 1.6E-08 86.1 9.6 57 195-252 310-366 (986)
16 smart00195 DSPc Dual specifici 97.2 0.00053 1.2E-08 69.5 6.2 57 614-670 44-102 (138)
17 PF00782 DSPc: Dual specificit 97.2 0.00059 1.3E-08 68.5 5.6 58 614-671 39-98 (133)
18 cd00127 DSPc Dual specificity 97.1 0.00056 1.2E-08 68.9 5.4 59 195-253 47-107 (139)
19 smart00012 PTPc_DSPc Protein t 97.1 0.001 2.2E-08 63.0 6.1 60 616-675 4-68 (105)
20 smart00404 PTPc_motif Protein 97.1 0.001 2.2E-08 63.0 6.1 60 616-675 4-68 (105)
21 KOG1720 Protein tyrosine phosp 97.0 0.0009 1.9E-08 72.4 5.8 58 614-673 115-172 (225)
22 PF05706 CDKN3: Cyclin-depende 97.0 0.0011 2.3E-08 70.1 6.2 67 1040-1113 89-158 (168)
23 TIGR01244 conserved hypothetic 97.0 0.0016 3.5E-08 66.6 6.7 51 195-249 57-107 (135)
24 cd00127 DSPc Dual specificity 96.7 0.0022 4.8E-08 64.6 5.5 57 614-670 47-105 (139)
25 PRK12361 hypothetical protein; 96.6 0.0023 5E-08 79.7 5.6 59 195-253 142-201 (547)
26 TIGR01244 conserved hypothetic 96.5 0.0052 1.1E-07 63.0 6.5 50 614-667 57-106 (135)
27 PF04273 DUF442: Putative phos 96.4 0.0091 2E-07 59.4 7.5 61 179-248 46-106 (110)
28 PRK12361 hypothetical protein; 96.4 0.0037 8.1E-08 77.9 5.8 57 614-670 142-199 (547)
29 KOG1719 Dual specificity phosp 96.3 0.0052 1.1E-07 63.7 5.0 66 185-255 70-137 (183)
30 KOG1719 Dual specificity phosp 96.2 0.0064 1.4E-07 63.1 5.3 57 613-670 74-132 (183)
31 COG5599 PTP2 Protein tyrosine 96.1 0.0034 7.4E-08 70.0 2.7 48 203-253 193-244 (302)
32 PF03162 Y_phosphatase2: Tyros 96.0 0.013 2.8E-07 62.3 6.7 44 209-253 74-117 (164)
33 PF04273 DUF442: Putative phos 95.7 0.015 3.2E-07 57.9 5.1 60 599-667 47-106 (110)
34 COG5350 Predicted protein tyro 95.7 0.012 2.5E-07 61.1 4.3 58 196-253 60-119 (172)
35 PHA02740 protein tyrosine phos 95.5 0.053 1.1E-06 62.9 9.6 59 614-674 180-249 (298)
36 KOG0792 Protein tyrosine phosp 95.4 0.0082 1.8E-07 77.0 2.7 48 204-253 1037-1089(1144)
37 smart00194 PTPc Protein tyrosi 95.4 0.02 4.4E-07 64.4 5.4 54 198-253 163-219 (258)
38 cd00047 PTPc Protein tyrosine 95.3 0.026 5.6E-07 62.3 5.7 51 203-253 138-192 (231)
39 smart00194 PTPc Protein tyrosi 95.2 0.028 6E-07 63.2 5.6 60 614-675 160-222 (258)
40 KOG0791 Protein tyrosine phosp 95.1 0.022 4.8E-07 66.3 4.8 59 196-254 253-314 (374)
41 COG5599 PTP2 Protein tyrosine 95.0 0.016 3.5E-07 64.9 3.2 51 617-670 188-242 (302)
42 PHA02742 protein tyrosine phos 95.0 0.031 6.7E-07 64.9 5.5 51 203-253 191-255 (303)
43 PHA02740 protein tyrosine phos 95.0 0.028 6E-07 65.2 5.0 48 204-253 187-247 (298)
44 PLN02727 NAD kinase 94.9 0.044 9.4E-07 70.6 6.7 63 601-669 302-364 (986)
45 COG5350 Predicted protein tyro 94.8 0.038 8.2E-07 57.4 4.8 57 614-670 59-117 (172)
46 PRK15375 pathogenicity island 94.6 0.036 7.9E-07 67.4 4.9 48 203-250 431-489 (535)
47 KOG0791 Protein tyrosine phosp 94.1 0.084 1.8E-06 61.7 6.1 61 614-674 252-315 (374)
48 PHA02742 protein tyrosine phos 94.0 0.076 1.6E-06 61.7 5.7 54 620-673 189-256 (303)
49 cd00047 PTPc Protein tyrosine 93.9 0.12 2.6E-06 57.0 6.9 54 622-675 138-195 (231)
50 KOG0790 Protein tyrosine phosp 93.9 0.038 8.3E-07 65.3 3.0 57 197-253 416-477 (600)
51 PHA02747 protein tyrosine phos 93.8 0.072 1.6E-06 62.2 5.0 51 203-253 192-255 (312)
52 KOG1716 Dual specificity phosp 93.7 0.071 1.5E-06 61.4 4.8 59 195-253 121-181 (285)
53 PF13350 Y_phosphatase3: Tyros 93.5 0.12 2.7E-06 54.3 5.9 71 178-250 48-147 (164)
54 KOG0790 Protein tyrosine phosp 93.3 0.08 1.7E-06 62.8 4.2 61 616-676 416-481 (600)
55 PHA02746 protein tyrosine phos 93.3 0.11 2.3E-06 61.1 5.3 27 227-253 247-273 (323)
56 PF13350 Y_phosphatase3: Tyros 92.8 0.17 3.7E-06 53.2 5.7 71 597-667 48-145 (164)
57 PHA02738 hypothetical protein; 92.8 0.17 3.6E-06 59.4 5.9 27 227-253 227-253 (320)
58 PRK15375 pathogenicity island 92.3 0.16 3.4E-06 62.1 4.9 49 620-668 429-488 (535)
59 PHA02746 protein tyrosine phos 92.3 0.23 5E-06 58.3 6.3 59 614-674 204-275 (323)
60 PHA02738 hypothetical protein; 92.2 0.15 3.2E-06 59.8 4.5 58 617-674 182-255 (320)
61 KOG1716 Dual specificity phosp 91.9 0.2 4.2E-06 57.8 5.1 57 614-670 121-179 (285)
62 PHA02747 protein tyrosine phos 91.8 0.18 3.9E-06 58.9 4.6 53 621-673 191-256 (312)
63 KOG1717 Dual specificity phosp 91.5 0.25 5.4E-06 55.6 5.1 63 613-675 216-280 (343)
64 KOG0792 Protein tyrosine phosp 91.5 0.22 4.8E-06 64.6 5.2 53 621-673 1035-1090(1144)
65 PF00102 Y_phosphatase: Protei 90.5 0.31 6.8E-06 53.1 4.7 52 202-255 142-198 (235)
66 KOG4228 Protein tyrosine phosp 90.5 0.16 3.6E-06 66.3 2.8 60 614-673 983-1045(1087)
67 KOG1717 Dual specificity phosp 90.2 0.32 7E-06 54.7 4.4 58 195-252 217-276 (343)
68 PF00102 Y_phosphatase: Protei 89.5 0.4 8.6E-06 52.3 4.5 60 614-675 137-199 (235)
69 KOG4228 Protein tyrosine phosp 89.3 0.3 6.6E-06 63.9 3.8 60 616-675 697-759 (1087)
70 KOG1718 Dual specificity phosp 88.0 0.76 1.6E-05 48.9 5.0 59 614-673 60-120 (198)
71 PF03162 Y_phosphatase2: Tyros 85.8 0.68 1.5E-05 49.3 3.4 54 614-670 56-113 (164)
72 KOG2283 Clathrin coat dissocia 85.7 0.48 1E-05 57.7 2.5 57 616-673 74-133 (434)
73 KOG0789 Protein tyrosine phosp 83.6 1.7 3.7E-05 52.1 5.9 55 196-252 265-324 (415)
74 KOG2836 Protein tyrosine phosp 79.6 8.1 0.00018 39.9 8.0 54 614-667 62-118 (173)
75 KOG2836 Protein tyrosine phosp 77.7 2.2 4.8E-05 43.9 3.4 55 195-249 62-119 (173)
76 COG3453 Uncharacterized protei 77.4 13 0.00028 38.0 8.5 75 154-243 28-102 (130)
77 KOG1718 Dual specificity phosp 76.9 3.5 7.5E-05 44.1 4.7 59 195-254 60-120 (198)
78 KOG0789 Protein tyrosine phosp 76.7 5.1 0.00011 48.0 6.9 55 616-672 266-325 (415)
79 KOG2283 Clathrin coat dissocia 68.6 2.9 6.2E-05 51.1 2.1 55 198-253 75-132 (434)
80 COG3453 Uncharacterized protei 55.2 28 0.0006 35.6 5.8 61 599-671 48-108 (130)
81 KOG1530 Rhodanese-related sulf 55.2 20 0.00044 37.1 4.9 65 596-666 42-108 (136)
82 KOG0793 Protein tyrosine phosp 54.0 9.8 0.00021 48.2 3.0 54 198-254 895-953 (1004)
83 KOG1530 Rhodanese-related sulf 48.7 27 0.00059 36.2 4.7 65 178-248 43-109 (136)
84 COG2365 Protein tyrosine/serin 44.1 22 0.00048 40.4 3.7 41 212-253 122-162 (249)
85 KOG1572 Predicted protein tyro 42.6 52 0.0011 37.4 6.1 61 195-255 109-176 (249)
86 cd01523 RHOD_Lact_B Member of 41.2 58 0.0013 31.0 5.6 23 220-243 54-76 (100)
87 cd03174 DRE_TIM_metallolyase D 39.0 1.7E+02 0.0037 32.8 9.8 83 145-239 120-202 (265)
88 KOG0793 Protein tyrosine phosp 38.7 42 0.0009 42.9 5.0 61 616-679 894-959 (1004)
89 cd01518 RHOD_YceA Member of th 34.6 53 0.0012 31.4 4.2 20 643-663 58-77 (101)
90 COG2365 Protein tyrosine/serin 33.9 44 0.00096 38.0 4.1 35 1077-1113 126-161 (249)
91 PF04212 MIT: MIT (microtubule 29.8 2.4E+02 0.0051 25.5 7.3 51 746-797 5-61 (69)
92 PF11521 TFIIE-A_C-term: C-ter 28.0 34 0.00074 33.0 1.6 33 957-999 39-71 (86)
93 cd07945 DRE_TIM_CMS Leptospira 27.5 2.4E+02 0.0052 32.8 8.7 116 122-257 101-216 (280)
94 PF01656 CbiA: CobQ/CobB/MinD/ 27.4 60 0.0013 34.2 3.5 24 230-253 2-25 (195)
95 cd07938 DRE_TIM_HMGL 3-hydroxy 27.4 3.6E+02 0.0078 31.2 10.0 102 125-238 103-204 (274)
96 KOG2386 mRNA capping enzyme, g 27.4 36 0.00077 41.3 2.0 57 195-252 86-148 (393)
97 PLN02746 hydroxymethylglutaryl 27.2 2.4E+02 0.0053 33.9 8.8 105 122-238 148-252 (347)
98 cd07945 DRE_TIM_CMS Leptospira 26.2 2.6E+02 0.0057 32.5 8.7 115 543-678 103-217 (280)
99 KOG1572 Predicted protein tyro 25.4 1.6E+02 0.0034 33.7 6.3 55 614-670 109-170 (249)
100 TIGR03815 CpaE_hom_Actino heli 25.2 1.1E+02 0.0023 35.9 5.4 63 184-253 55-120 (322)
101 cd07947 DRE_TIM_Re_CS Clostrid 25.1 3.7E+02 0.0081 31.3 9.6 108 122-241 101-219 (279)
102 COG4981 Enoyl reductase domain 24.8 3.8E+02 0.0081 34.1 9.7 138 63-254 62-211 (717)
103 PRK05692 hydroxymethylglutaryl 23.5 6.1E+02 0.013 29.6 11.1 105 123-240 107-212 (287)
104 cd02036 MinD Bacterial cell di 22.8 75 0.0016 33.0 3.2 25 229-253 2-26 (179)
105 cd01518 RHOD_YceA Member of th 22.4 1.2E+02 0.0026 28.9 4.3 21 224-245 58-78 (101)
106 PRK00915 2-isopropylmalate syn 22.0 1.3E+03 0.029 29.1 14.4 97 126-240 110-209 (513)
107 PRK07414 cob(I)yrinic acid a,c 21.5 71 0.0015 34.8 2.7 26 226-253 20-45 (178)
108 cd01523 RHOD_Lact_B Member of 20.8 2.3E+02 0.0049 26.9 5.8 52 597-661 20-75 (100)
109 cd03111 CpaE_like This protein 20.5 91 0.002 30.5 3.0 25 230-254 3-27 (106)
110 cd07948 DRE_TIM_HCS Saccharomy 20.5 3.1E+02 0.0067 31.6 7.8 98 122-238 98-195 (262)
111 cd07939 DRE_TIM_NifV Streptomy 20.2 5.4E+02 0.012 29.3 9.6 99 125-241 99-198 (259)
112 cd03174 DRE_TIM_metallolyase D 20.2 4.3E+02 0.0093 29.6 8.8 55 613-673 158-212 (265)
No 1
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=100.00 E-value=2.8e-41 Score=347.08 Aligned_cols=145 Identities=44% Similarity=0.746 Sum_probs=119.3
Q ss_pred EEcCCCceEEEcCceeEeecCCCCCCcc-ccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCC---ccccce
Q 000835 97 ISLREEPVVYINGRPFVLRDVGRPFSNL-EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQ---MVDQWE 172 (1263)
Q Consensus 97 vdLREEph~yING~p~s~r~~~~~~~N~-~~~Gis~~~ve~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~---~~~~w~ 172 (1263)
|||||||||||||.|||||+..++.+|+ .+.|++.+++|++|.+||+||+.+++++++.+++|++..++. +.+.|+
T Consensus 1 vdLReE~h~~ing~p~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~ 80 (149)
T PF14566_consen 1 VDLREEPHGYINGRPYSWREPDNPANNIKSYPGISADEVEQLEERLKEDILKEAKRFGGRILVHDEDEDGVVSTVIEVWE 80 (149)
T ss_dssp EEEE-S-EEEETTEEEEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCEEEEECEECCCTCCCCEECEEEEE-S-E--
T ss_pred CcCCcCCEEEECCcEeeecccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccchhhhH
Confidence 7999999999999999999998777776 678999999999999999999999999999999999987773 333333
Q ss_pred eeccCcccChHHHHHHhhhcCccceEEEeecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000835 173 PVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVY 252 (1263)
Q Consensus 173 ~v~~~~V~T~~Ev~~~~~~~g~~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 252 (1263)
.+|++++++.. +++|+|||||||.+|++++||+||++++++|+++|||||||+|+||||||||||+|||
T Consensus 81 ------~~~e~~~~~~~-----g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 81 ------EVTEEELVEGN-----GLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -------E-HHHHHHHT-----T-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcC-----CceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888855 6679999999999999999999999999999999999999999999999999999996
No 2
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=100.00 E-value=1.7e-40 Score=341.22 Aligned_cols=146 Identities=45% Similarity=0.764 Sum_probs=122.3
Q ss_pred EEccccceEEECCeeeeecccCCccccchhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeecCCC---ccccccc
Q 000835 515 HNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDG---QIFDAWE 591 (1263)
Q Consensus 515 vdLREEpv~yinG~p~slR~~~~~~~N~~~~~Gis~~~VE~~E~~Lk~dil~e~~~~~g~~l~~~e~~~~---~~~~~we 591 (1263)
|||||||||||||+|||||+.+++..|+..+.|++++++|++|.+||+||+.+++..++.+++|++...+ .+.++|+
T Consensus 1 vdLReE~h~~ing~p~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~ 80 (149)
T PF14566_consen 1 VDLREEPHGYINGRPYSWREPDNPANNIKSYPGISADEVEQLEERLKEDILKEAKRFGGRILVHDEDEDGVVSTVIEVWE 80 (149)
T ss_dssp EEEE-S-EEEETTEEEEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCEEEEECEECCCTCCCCEECEEEEE-S-E--
T ss_pred CcCCcCCEEEECCcEeeecccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccchhhhH
Confidence 7999999999999999999999998887788999999999999999999999999999999999987777 4566665
Q ss_pred cccCCCccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHH
Q 000835 592 HVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671 (1263)
Q Consensus 592 ~v~~~~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~~Li~ 671 (1263)
.+|++++++.. |++|+|||+|||+||.+++||+|+++++++|+++|||||||+|+|||||||||++|+.
T Consensus 81 ------~~~e~~~~~~~-----g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 81 ------EVTEEELVEGN-----GLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -------E-HHHHHHHT-----T-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcC-----CceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 68888888876 9999999999999999999999999999999999999999999999999999999984
No 3
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=97.98 E-value=9.8e-06 Score=85.72 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=50.6
Q ss_pred cceEEEeecCCCCCCCccchHHHHHHhhcC-----CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
++.|+++|++|+..|..++++.|++++.+. .++..+++||.+|.|||-|++++| ||+.
T Consensus 61 gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~y-L~~~ 123 (166)
T PTZ00242 61 GIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALA-LVEY 123 (166)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHH-HHHh
Confidence 456999999999999999999999999753 468899999999999999999998 4443
No 4
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.83 E-value=2.1e-05 Score=84.15 Aligned_cols=59 Identities=27% Similarity=0.458 Sum_probs=53.5
Q ss_pred cceEEEeecCCCCCCCccchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
++.+..+|+.|+..|+.+++|.++.++.+. .++..+++||++|.|||-|-++.+.|...
T Consensus 72 ~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~ 131 (180)
T COG2453 72 GIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYG 131 (180)
T ss_pred CceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHc
Confidence 456999999999999999999999999976 45669999999999999999999988874
No 5
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=97.82 E-value=6.1e-05 Score=79.74 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=52.6
Q ss_pred HHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhc-----CCCCeEEEecCCCCCcchhHHHHHH
Q 000835 603 EVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASA-----SKDTAFVFNCQMGRGRTTTGTVIAC 668 (1263)
Q Consensus 603 Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~-----~~~~~l~FhCq~G~GRTTt~Mvi~~ 668 (1263)
+.+... |+.|.++|++|+..|..++++.|++++... .++..+++||.+|.|||-|+++++.
T Consensus 55 ~~~~~~-----gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL 120 (166)
T PTZ00242 55 ELLEKN-----GIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALAL 120 (166)
T ss_pred HHHHHC-----CCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 455554 899999999999999999999999988763 3588999999999999999888773
No 6
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.72 E-value=4.8e-05 Score=84.22 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=48.4
Q ss_pred cceEEEeecCCCCCCCccchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVY 252 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 252 (1263)
+|.|+++|++|+.+|.++.++.|++++... ..+..+.+||.+|.|||-|..++| ||.
T Consensus 137 GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aay-LI~ 194 (241)
T PTZ00393 137 GINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIV-LIE 194 (241)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH-HHH
Confidence 455999999999999999999999999753 467789999999999998776665 444
No 7
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.58 E-value=0.00011 Score=81.50 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=45.2
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc-CCCCeEEEecCCCCCcchhH
Q 000835 614 PIKYARVPITDGKAPKTSDFDMLAVNIASA-SKDTAFVFNCQMGRGRTTTG 663 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~-~~~~~l~FhCq~G~GRTTt~ 663 (1263)
|+.|+++|++|+.+|..+.+++|++++... ..+..+.+||.+|.|||-|.
T Consensus 137 GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl 187 (241)
T PTZ00393 137 GINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVL 187 (241)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 999999999999999999999999999765 36678999999999999654
No 8
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.54 E-value=0.00011 Score=78.78 Aligned_cols=61 Identities=31% Similarity=0.371 Sum_probs=55.0
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 613 FPIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 613 ~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~-~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
.++.+..+|+.|+..|+.++++.++.++.++. .+.-+++||++|.|||-|-++-++|....
T Consensus 71 ~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~ 132 (180)
T COG2453 71 DGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGG 132 (180)
T ss_pred CCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcC
Confidence 38899999999999999999999999999885 55599999999999999999988888544
No 9
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.38 E-value=0.00023 Score=74.96 Aligned_cols=71 Identities=30% Similarity=0.399 Sum_probs=45.1
Q ss_pred CCccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 596 ESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 596 ~~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~-~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
-.|-+..+.+++. |+.++++||+|..+|+.+..-+++..+.... .+.-+++||..|.||| +||.+||+...
T Consensus 87 l~Vp~L~~~~~~~-----Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRt--GlvAAcLLl~L 158 (168)
T PF05706_consen 87 LGVPDLGEAAQAR-----GIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRT--GLVAACLLLEL 158 (168)
T ss_dssp TT-TTHHHHHHHT-----T-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHH--HHHHHHHHHHH
T ss_pred cCCccHHHHHHHc-----CCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHH--HHHHHHHHHHH
Confidence 3456788888887 9999999999999997665555555555443 6788999999999997 67888887554
No 10
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.35 E-value=0.00031 Score=71.20 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=48.8
Q ss_pred cceEEEeecCCC-CCCCccchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDE-KSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 195 ~l~Y~RiPitd~-~~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
++.|.++|+.|+ ..|..+.++..++|+... ..+..+.+||.+|.|||.+++++|.|...
T Consensus 44 ~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 44 GFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred CCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 456999999994 556677888888888765 46788999999999999999999977654
No 11
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.33 E-value=0.00027 Score=71.01 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=52.1
Q ss_pred cceEEEeecCC-CCCCCccchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 195 LVDYERVPVTD-EKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 195 ~l~Y~RiPitd-~~~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
++.|.++|+.| ...|..+.++.+++|+.+. .++..+.+||++|.|||.+.+++|.|-+.
T Consensus 39 ~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 99 (133)
T PF00782_consen 39 GIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKN 99 (133)
T ss_dssp TSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHc
Confidence 56699999999 7888899999999999975 47789999999999999999998876654
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=97.31 E-value=0.00018 Score=77.66 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=49.9
Q ss_pred cceEEEeecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATL 250 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~L 250 (1263)
++.-+++|+.|...|+++.++.||+++.+.-+.-.+-+||.+|.|||-|-.+++.|
T Consensus 115 Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lm 170 (225)
T KOG1720|consen 115 GIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLM 170 (225)
T ss_pred CceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHH
Confidence 45599999999999999999999999999878999999999999999776666633
No 13
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.30 E-value=0.00033 Score=66.47 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=44.2
Q ss_pred EEEeecCCCCCCCc-cchHHHHHHhhcCC----CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000835 198 YERVPVTDEKSPKE-QDFDILVDKISQTD----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 254 (1263)
Q Consensus 198 Y~RiPitd~~~P~~-~~iD~fi~~v~~~p----~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 254 (1263)
|+-...+|+..|+. ++|-.|++.+++.. .+.++++||.+|.|||.++++++.++..-
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 56666778888877 56666666665432 36799999999999999999998887753
No 14
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.30 E-value=0.00033 Score=66.47 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=44.2
Q ss_pred EEEeecCCCCCCCc-cchHHHHHHhhcCC----CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000835 198 YERVPVTDEKSPKE-QDFDILVDKISQTD----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 254 (1263)
Q Consensus 198 Y~RiPitd~~~P~~-~~iD~fi~~v~~~p----~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 254 (1263)
|+-...+|+..|+. ++|-.|++.+++.. .+.++++||.+|.|||.++++++.++..-
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 56666778888877 56666666665432 36799999999999999999998887753
No 15
>PLN02727 NAD kinase
Probab=97.29 E-value=0.00074 Score=86.05 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=49.7
Q ss_pred cceEEEeecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVY 252 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 252 (1263)
+|.|+-||+++..+|.+++|++|.+++++. ...++.+||..|.+||.++.++|.-..
T Consensus 310 GL~yVhIPVs~~~apt~EqVe~fa~~l~~s-lpkPVLvHCKSGarRAGamvA~yl~~~ 366 (986)
T PLN02727 310 KIEVVKIPVEVRTAPSAEQVEKFASLVSDS-SKKPIYLHSKEGVWRTSAMVSRWKQYM 366 (986)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHhh-cCCCEEEECCCCCchHHHHHHHHHHHH
Confidence 466999999999999999999999999542 356899999999999999999996544
No 16
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.23 E-value=0.00053 Score=69.47 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=48.5
Q ss_pred CceEEEeecCC-CCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 614 PIKYARVPITD-GKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 614 gl~Y~RIPitD-~~aP~~~d~D~fi~~v~~~~-~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
++.|.++|+.| ...|..+.+++.++++.... .+..+.+||.+|.|||.+.++.+.|.
T Consensus 44 ~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~ 102 (138)
T smart00195 44 GFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMK 102 (138)
T ss_pred CCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHH
Confidence 89999999999 46677778888888887764 66789999999999999988888665
No 17
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.15 E-value=0.00059 Score=68.54 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=51.2
Q ss_pred CceEEEeecCC-CCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHH
Q 000835 614 PIKYARVPITD-GKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 671 (1263)
Q Consensus 614 gl~Y~RIPitD-~~aP~~~d~D~fi~~v~~~~-~~~~l~FhCq~G~GRTTt~Mvi~~Li~ 671 (1263)
++.|.++|+.| ...|..+.++.+.+++.... ++..+.+||++|.|||.+.++.|-|..
T Consensus 39 ~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 98 (133)
T PF00782_consen 39 GIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK 98 (133)
T ss_dssp TSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence 88999999999 88999999999999998864 778899999999999999777666553
No 18
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.14 E-value=0.00056 Score=68.89 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=46.9
Q ss_pred cceEEEeecCCCC-CCCccchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEK-SPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 195 ~l~Y~RiPitd~~-~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
++.|..+|+.|.. .+....++.+++++... ..+..+.+||.+|.|||.++++.+.|...
T Consensus 47 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 47 DFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred CceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 3459999999987 34456788888888754 34678999999999999999988866654
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.07 E-value=0.001 Score=63.04 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=46.4
Q ss_pred eEEEeecCCCCCCCc-ccHHHHHHHHHhcC----CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000835 616 KYARVPITDGKAPKT-SDFDMLAVNIASAS----KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 675 (1263)
Q Consensus 616 ~Y~RIPitD~~aP~~-~d~D~fi~~v~~~~----~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~ 675 (1263)
.|+=...+|+..|.. ++|-.|+..++... .+.++++||.+|.|||.++.+++.++.....
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~ 68 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLES 68 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHh
Confidence 455566678899988 67777777776643 3679999999999999999888877755543
No 20
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.07 E-value=0.001 Score=63.04 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=46.4
Q ss_pred eEEEeecCCCCCCCc-ccHHHHHHHHHhcC----CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000835 616 KYARVPITDGKAPKT-SDFDMLAVNIASAS----KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 675 (1263)
Q Consensus 616 ~Y~RIPitD~~aP~~-~d~D~fi~~v~~~~----~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~ 675 (1263)
.|+=...+|+..|.. ++|-.|+..++... .+.++++||.+|.|||.++.+++.++.....
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~ 68 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLES 68 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHh
Confidence 455566678899988 67777777776643 3679999999999999999888877755543
No 21
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=97.03 E-value=0.0009 Score=72.40 Aligned_cols=58 Identities=29% Similarity=0.492 Sum_probs=52.7
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 614 PIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
|+.-+++|++|.+.|+++.+++|++.+-.+.++..+-+||.+|.||| +|+|+|.+...
T Consensus 115 Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRT--G~liAc~lmy~ 172 (225)
T KOG1720|consen 115 GIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRT--GTLIACYLMYE 172 (225)
T ss_pred CceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCch--hHHHHHHHHHH
Confidence 99999999999999999999999999999888999999999999998 56777766555
No 22
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.03 E-value=0.0011 Score=70.06 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHhhcCCCeeEeeecCCCcccCChhhHHHHHHhhc---CCCCceEEeccCCCCcchhHHHHHHHHHhh
Q 000835 1040 VKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAIQYCKD---DSAGCYLFVSHTGFGGVAYAMAIICLRLDA 1113 (1263)
Q Consensus 1040 v~Tp~Evy~~~~~~g~~v~Y~RiPitde~aP~~~~fd~l~~~~~---~~~~~~vfnCqmGrGrtTt~Mvia~L~~~~ 1113 (1263)
|-+..|.|.+ .++.++++||.|..+|..+.+-+++..+. ..+...+.-|.-|.||| |||.|||++-.
T Consensus 89 Vp~L~~~~~~-----~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRt--GlvAAcLLl~L 158 (168)
T PF05706_consen 89 VPDLGEAAQA-----RGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRT--GLVAACLLLEL 158 (168)
T ss_dssp -TTHHHHHHH-----TT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHH--HHHHHHHHHHH
T ss_pred CccHHHHHHH-----cCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHH--HHHHHHHHHHH
Confidence 4566777777 67899999999999997665555555554 67889999999999999 99999998654
No 23
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.95 E-value=0.0016 Score=66.65 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=42.8
Q ss_pred cceEEEeecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIAT 249 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~ 249 (1263)
++.|+.||+.... +++++++.|..++.+.| .+++|||.+|. ||..++.++.
T Consensus 57 gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~--~pvL~HC~sG~-Rt~~l~al~~ 107 (135)
T TIGR01244 57 GVTYHHQPVTAGD-ITPDDVETFRAAIGAAE--GPVLAYCRSGT-RSSLLWGFRQ 107 (135)
T ss_pred CCeEEEeecCCCC-CCHHHHHHHHHHHHhCC--CCEEEEcCCCh-HHHHHHHHHH
Confidence 4669999999765 78999999999998763 67999999999 9888776653
No 24
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=96.72 E-value=0.0022 Score=64.59 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=45.3
Q ss_pred CceEEEeecCCCC-CCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 614 PIKYARVPITDGK-APKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 614 gl~Y~RIPitD~~-aP~~~d~D~fi~~v~~~~-~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
++.|..+|+.|.. .+.+..++.+++++.... .+..+.+||.+|.|||.++++.+.|.
T Consensus 47 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~ 105 (139)
T cd00127 47 DFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105 (139)
T ss_pred CceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHH
Confidence 8899999999987 344457777788887643 46789999999999999988766555
No 25
>PRK12361 hypothetical protein; Provisional
Probab=96.59 E-value=0.0023 Score=79.72 Aligned_cols=59 Identities=24% Similarity=0.439 Sum_probs=51.5
Q ss_pred cceEEEeecCCCCCCCccchHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKEQDFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~p-~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
++.|.+||+.|+..|+.++++..++|+.+.- .+..+.+||.+|+|||.+.++.|.|.+.
T Consensus 142 ~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 142 DIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred CceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 3569999999999999999999999998653 4678999999999999999999966554
No 26
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.50 E-value=0.0052 Score=62.97 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=41.7
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHH
Q 000835 614 PIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIA 667 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~ 667 (1263)
|+.|+.||+.... +.++++.+|..++.+.+ .+++|||.+|+ ||...+.++
T Consensus 57 gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~--~pvL~HC~sG~-Rt~~l~al~ 106 (135)
T TIGR01244 57 GVTYHHQPVTAGD-ITPDDVETFRAAIGAAE--GPVLAYCRSGT-RSSLLWGFR 106 (135)
T ss_pred CCeEEEeecCCCC-CCHHHHHHHHHHHHhCC--CCEEEEcCCCh-HHHHHHHHH
Confidence 9999999998754 78999999999997653 67999999999 977665554
No 27
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.44 E-value=0.0091 Score=59.40 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=43.1
Q ss_pred ccChHHHHHHhhhcCccceEEEeecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHH
Q 000835 179 VKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIA 248 (1263)
Q Consensus 179 V~T~~Ev~~~~~~~g~~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~ 248 (1263)
...+++.+++. +|.|+.|||+.. .++.+++++|.+.+.++|+ ++++||..|. |.+..+.++
T Consensus 46 ~~~~~~~a~~~-----Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~--Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 46 SAEEAAAAEAL-----GLQYVHIPVDGG-AITEEDVEAFADALESLPK--PVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HHCHHHHHHHC-----T-EEEE----TT-T--HHHHHHHHHHHHTTTT--SEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCeEEEeecCCC-CCCHHHHHHHHHHHHhCCC--CEEEECCCCh-hHHHHHHHH
Confidence 34577777766 566999999986 4899999999999999864 7999999997 887777765
No 28
>PRK12361 hypothetical protein; Provisional
Probab=96.41 E-value=0.0037 Score=77.90 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=50.0
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 614 PIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~-~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
++.|.+||+.|+..|..+++++.++++.+.. .+..+.+||.+|+|||.+.++.|.|.
T Consensus 142 ~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 142 DIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLC 199 (547)
T ss_pred CceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHH
Confidence 7899999999999999999999999998764 56789999999999999977776543
No 29
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.29 E-value=0.0052 Score=63.72 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=54.7
Q ss_pred HHHHhhhcCccceEEEeecCCC-CCCCccchHHHHHHhh-cCCCCCeEEEEcCCCCCchHHHHHHHHHHHHhh
Q 000835 185 VYEELQVEGYLVDYERVPVTDE-KSPKEQDFDILVDKIS-QTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNR 255 (1263)
Q Consensus 185 v~~~~~~~g~~l~Y~RiPitd~-~~P~~~~iD~fi~~v~-~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~ 255 (1263)
.++.. +|++.+||.+|. .+|.-++|-.=++|+. .++.+...-+||.||+||++|...+|.|..+.+
T Consensus 70 ~wk~~-----giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~w 137 (183)
T KOG1719|consen 70 LWKNY-----GIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNW 137 (183)
T ss_pred HHHhc-----cceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCC
Confidence 66644 677999999986 5788999999999985 567788999999999999999888887766543
No 30
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.23 E-value=0.0064 Score=63.07 Aligned_cols=57 Identities=26% Similarity=0.433 Sum_probs=47.2
Q ss_pred CCceEEEeecCCC-CCCCcccHHHHHHHHHh-cCCCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 613 FPIKYARVPITDG-KAPKTSDFDMLAVNIAS-ASKDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 613 ~gl~Y~RIPitD~-~aP~~~d~D~fi~~v~~-~~~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
+|+.+.+||.+|. .+|.-+++..=++|+.+ ++.+-..-+||.+||||+|| ||.+.||
T Consensus 74 ~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaT-vV~cYLm 132 (183)
T KOG1719|consen 74 YGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSAT-VVACYLM 132 (183)
T ss_pred ccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchh-hhhhhhh
Confidence 3999999999997 68999999998999865 45667888999999999998 4444444
No 31
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.08 E-value=0.0034 Score=70.05 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=38.1
Q ss_pred cCCCCCCCccchHHHHHHhhcC---C-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 203 VTDEKSPKEQDFDILVDKISQT---D-LNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 203 itd~~~P~~~~iD~fi~~v~~~---p-~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
=.|...| ++-.+.++++++ | .+.++++||.||.|||.|||++-.|++.
T Consensus 193 W~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 193 WVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred ccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 5677777 566666666654 4 6789999999999999999999888774
No 32
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=96.04 E-value=0.013 Score=62.26 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=29.4
Q ss_pred CCccchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 209 PKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 209 P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
+.++.+.+.++++.+. .+-++.+||..|..||.+...|+-.+++
T Consensus 74 ~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lRk~Q~ 117 (164)
T PF03162_consen 74 ISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLRKLQG 117 (164)
T ss_dssp --HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHHHHcC
Confidence 4566666666666554 5679999999999999887777765544
No 33
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.70 E-value=0.015 Score=57.92 Aligned_cols=60 Identities=22% Similarity=0.404 Sum_probs=42.8
Q ss_pred cCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHH
Q 000835 599 QTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIA 667 (1263)
Q Consensus 599 ~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~ 667 (1263)
..+++..+.+ |+.|+-|||+-. .+.++++++|.+.+.++++ .+++||..|. |.+..+.++
T Consensus 47 ~~~~~~a~~~-----Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~--Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 47 AEEAAAAEAL-----GLQYVHIPVDGG-AITEEDVEAFADALESLPK--PVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HCHHHHHHHC-----T-EEEE----TT-T--HHHHHHHHHHHHTTTT--SEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHHHHHHc-----CCeEEEeecCCC-CCCHHHHHHHHHHHHhCCC--CEEEECCCCh-hHHHHHHHH
Confidence 4577788887 999999999985 5899999999999998764 6999999997 777766654
No 34
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=95.67 E-value=0.012 Score=61.11 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=47.3
Q ss_pred ceEEEeecCCC--CCCCccchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 196 VDYERVPVTDE--KSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 196 l~Y~RiPitd~--~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
|.+.-|-.+|. .+|.++-++..++|+.+.|..+.+++||.+|++|+|.+..++.|...
T Consensus 60 l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala 119 (172)
T COG5350 60 LHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALA 119 (172)
T ss_pred EeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhc
Confidence 33444544444 58999999999999999999999999999999999988777666443
No 35
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.52 E-value=0.053 Score=62.88 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=39.9
Q ss_pred CceEEEeecCCCCCCC-cccHHHHHHHHHh---------c-CCCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000835 614 PIKYARVPITDGKAPK-TSDFDMLAVNIAS---------A-SKDTAFVFNCQMGRGRTTTGTVIACLLKLRI 674 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~-~~d~D~fi~~v~~---------~-~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~ 674 (1263)
.+.|..= ||++.|. +..|=.|+..++. . ...+++++||.+|.|||-||.++-.++.+..
T Consensus 180 Hfqyt~W--Pd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~ 249 (298)
T PHA02740 180 HFQYTAW--PADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFD 249 (298)
T ss_pred EEeecCC--CCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHH
Confidence 3444444 5888884 4455555544432 1 2457899999999999999999887775543
No 36
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=95.43 E-value=0.0082 Score=77.00 Aligned_cols=48 Identities=25% Similarity=0.467 Sum_probs=35.0
Q ss_pred CCCCCCCccchHHHHHHhhcC-----CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 204 TDEKSPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 204 td~~~P~~~~iD~fi~~v~~~-----p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
+||+-| +|.+.|++|+..+ ..+++|++||.+|.|||.+-..|=++|..
T Consensus 1037 PDHg~P--~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~l 1089 (1144)
T KOG0792|consen 1037 PDHGVP--DDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCL 1089 (1144)
T ss_pred ccCCCC--CChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHH
Confidence 455555 4666777766543 25789999999999999988777666654
No 37
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=95.39 E-value=0.02 Score=64.36 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=42.4
Q ss_pred EEEeecCCCCCC-CccchHHHHHHhhcCCC--CCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 198 YERVPVTDEKSP-KEQDFDILVDKISQTDL--NTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 198 Y~RiPitd~~~P-~~~~iD~fi~~v~~~p~--~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
|..-| |++.| ..+.+-.|+..++.... +.++++||.+|.|||.++.++..++..
T Consensus 163 y~~W~--d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~ 219 (258)
T smart00194 163 YTNWP--DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQ 219 (258)
T ss_pred eCCCC--CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHH
Confidence 44444 88888 45677788887776543 689999999999999999988877664
No 38
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=95.27 E-value=0.026 Score=62.32 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=42.4
Q ss_pred cCCCCCCCc-cchHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 203 VTDEKSPKE-QDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 203 itd~~~P~~-~~iD~fi~~v~~~---p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
-+|+..|.. +++-.|+..++.. +.+.++++||.+|.|||-++.++..++..
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~ 192 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQR 192 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 568888887 7888888888766 35789999999999999999888777664
No 39
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=95.15 E-value=0.028 Score=63.22 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=46.7
Q ss_pred CceEEEeecCCCCCC-CcccHHHHHHHHHhcCC--CCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000835 614 PIKYARVPITDGKAP-KTSDFDMLAVNIASASK--DTAFVFNCQMGRGRTTTGTVIACLLKLRID 675 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP-~~~d~D~fi~~v~~~~~--~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~ 675 (1263)
.+.|..-| |+..| ..+++-+|+..++.... ..++++||.+|.|||.++.++..++.....
T Consensus 160 ~~~y~~W~--d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~ 222 (258)
T smart00194 160 HYHYTNWP--DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEA 222 (258)
T ss_pred EEeeCCCC--CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHH
Confidence 44555555 88999 55788888888877643 689999999999999999888877765544
No 40
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.13 E-value=0.022 Score=66.34 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=45.5
Q ss_pred ceEEEeecCCCCCCC-ccchHHHHHHhhcCC--CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000835 196 VDYERVPVTDEKSPK-EQDFDILVDKISQTD--LNTEVIFNCQMGRGRTTTGMVIATLVYLN 254 (1263)
Q Consensus 196 l~Y~RiPitd~~~P~-~~~iD~fi~~v~~~p--~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 254 (1263)
.++++..-+||+.|+ ...+-+|+.-++... ..+|+++||.+|+|||.||++|=-|++.-
T Consensus 253 r~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~ 314 (374)
T KOG0791|consen 253 RHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQI 314 (374)
T ss_pred EEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHh
Confidence 468889999999993 233444555555443 35699999999999999999999998853
No 41
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.04 E-value=0.016 Score=64.87 Aligned_cols=51 Identities=27% Similarity=0.409 Sum_probs=40.6
Q ss_pred EEEeecCCCCCCCcccHHHHHHHHHhc---C-CCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 617 YARVPITDGKAPKTSDFDMLAVNIASA---S-KDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 617 Y~RIPitD~~aP~~~d~D~fi~~v~~~---~-~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
|.=.-=.|.+.| ++-.+.++++++ | ....+++||.||.|||-|||++-.|+
T Consensus 188 f~y~nW~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll 242 (302)
T COG5599 188 FQYINWVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILL 242 (302)
T ss_pred EEecCccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHH
Confidence 333445799999 676677777665 4 67899999999999999999998887
No 42
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=94.99 E-value=0.031 Score=64.87 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=36.3
Q ss_pred cCCCCCCC-ccchHHHHHHhhcC-------------CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 203 VTDEKSPK-EQDFDILVDKISQT-------------DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 203 itd~~~P~-~~~iD~fi~~v~~~-------------p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
=+|++.|. +..|=.|+..++.. +.+.++++||.+|.|||-+|.++..++..
T Consensus 191 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~ 255 (303)
T PHA02742 191 WPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISK 255 (303)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHH
Confidence 35777765 34555555555431 13479999999999999999998877754
No 43
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=94.97 E-value=0.028 Score=65.19 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=35.0
Q ss_pred CCCCCCCccchHHHHHHhhcC-------------CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 204 TDEKSPKEQDFDILVDKISQT-------------DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 204 td~~~P~~~~iD~fi~~v~~~-------------p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
+|++.|. +.+.|++|++.. ....++++||.+|.|||-+|.++-.++..
T Consensus 187 Pd~gvP~--~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~ 247 (298)
T PHA02740 187 PADGFSH--DPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATE 247 (298)
T ss_pred CCCCcCC--CHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHH
Confidence 4677664 455666665311 23579999999999999999998877764
No 44
>PLN02727 NAD kinase
Probab=94.85 E-value=0.044 Score=70.63 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=51.7
Q ss_pred HHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHH
Q 000835 601 PLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACL 669 (1263)
Q Consensus 601 ~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~~L 669 (1263)
++|..++. |+.|+-||+++..+|.++++++|.+.++... ..++.+||..|.+||-+..++|--
T Consensus 302 e~eAae~~-----GL~yVhIPVs~~~apt~EqVe~fa~~l~~sl-pkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 302 VDDAISSG-----KIEVVKIPVEVRTAPSAEQVEKFASLVSDSS-KKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred HHHHHHHc-----CCeEEEeecCCCCCCCHHHHHHHHHHHHhhc-CCCEEEECCCCCchHHHHHHHHHH
Confidence 34555555 9999999999999999999999999995422 357999999999999887777644
No 45
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=94.78 E-value=0.038 Score=57.45 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=48.6
Q ss_pred CceEEEeecCCC--CCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 614 PIKYARVPITDG--KAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 614 gl~Y~RIPitD~--~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
.+.+.-|..+|. .+|.++-++..++|+.+.|..+.+++||.+|.+|+|.+-.++-|.
T Consensus 59 ~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~a 117 (172)
T COG5350 59 TLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALA 117 (172)
T ss_pred eEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHh
Confidence 455666666665 489999999999999999999999999999999999887776654
No 46
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=94.62 E-value=0.036 Score=67.40 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=33.8
Q ss_pred cCCCCCCCc-cchHHHHHHhhcCCC----------CCeEEEEcCCCCCchHHHHHHHHH
Q 000835 203 VTDEKSPKE-QDFDILVDKISQTDL----------NTEVIFNCQMGRGRTTTGMVIATL 250 (1263)
Q Consensus 203 itd~~~P~~-~~iD~fi~~v~~~p~----------~~~l~FhCq~G~GRTTt~Mvm~~L 250 (1263)
=+||+.|.. +.+..|+..++.... ....++||.+|.|||-||++++.|
T Consensus 431 WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~ll 489 (535)
T PRK15375 431 WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVL 489 (535)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHH
Confidence 377777654 446677777765421 112389999999999999999764
No 47
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=94.08 E-value=0.084 Score=61.74 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=47.3
Q ss_pred CceEEEeecCCCCCCCcc-cHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000835 614 PIKYARVPITDGKAPKTS-DFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 674 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~~~-d~D~fi~~v~~~~--~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~ 674 (1263)
=..+++...+||..|++. ..-+|+..++... ..+|+++||.+|.|||-||+++=-|++..-
T Consensus 252 ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~ 315 (374)
T KOG0791|consen 252 IRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQID 315 (374)
T ss_pred eEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhc
Confidence 346888999999999433 3445555555554 457999999999999999999999986653
No 48
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=93.99 E-value=0.076 Score=61.69 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=39.7
Q ss_pred eecCCCCCCC-cccHHHHHHHHHhc-------------CCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 620 VPITDGKAPK-TSDFDMLAVNIASA-------------SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 620 IPitD~~aP~-~~d~D~fi~~v~~~-------------~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
.-=||+..|. +..|-.|+..++.. ...+++++||.+|.|||-||.++..++...
T Consensus 189 ~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~ 256 (303)
T PHA02742 189 EDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKY 256 (303)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHH
Confidence 3345888885 45677777766542 124789999999999999999988777544
No 49
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=93.92 E-value=0.12 Score=57.01 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=43.6
Q ss_pred cCCCCCCCc-ccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000835 622 ITDGKAPKT-SDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLRID 675 (1263)
Q Consensus 622 itD~~aP~~-~d~D~fi~~v~~~---~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~ 675 (1263)
-+|+..|.. +++-+|+..++.. ....++++||.+|.|||-++.++..++.....
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~ 195 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEA 195 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHh
Confidence 468888887 7888888888776 35779999999999999999887777655443
No 50
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=93.91 E-value=0.038 Score=65.34 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=42.2
Q ss_pred eEEEeecCCCCCCCc-cchHHHHHHhh----cCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 197 DYERVPVTDEKSPKE-QDFDILVDKIS----QTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 197 ~Y~RiPitd~~~P~~-~~iD~fi~~v~----~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
+|+=+.=+||+-|.+ --+=.|++=|. +++.-.++++||.||.|||.||+||-.||-+
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~ 477 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQ 477 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHH
Confidence 388889999999974 34444444443 2335569999999999999999998766553
No 51
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=93.78 E-value=0.072 Score=62.15 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=34.8
Q ss_pred cCCCCCCCc-cchHHHHHHhhcC---------C---CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 203 VTDEKSPKE-QDFDILVDKISQT---------D---LNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 203 itd~~~P~~-~~iD~fi~~v~~~---------p---~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
=+|++.|.. ..|-.|+..++.. | ...++++||.+|.|||-+|.++-.++..
T Consensus 192 Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~ 255 (312)
T PHA02747 192 WFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQ 255 (312)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHH
Confidence 357777753 3454555444321 1 2369999999999999999998777654
No 52
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.73 E-value=0.071 Score=61.37 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=45.9
Q ss_pred cceEEEeecCCCCCCCc-cchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKE-QDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~-~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
.++|.+||+.|.-.++- ..++.-+.||..+ ..+.-+.+||++|.+|+++..+.|.|...
T Consensus 121 ~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 121 GIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred CceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 46699999999555442 2366667777654 36889999999999999999999977665
No 53
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.55 E-value=0.12 Score=54.31 Aligned_cols=71 Identities=14% Similarity=0.288 Sum_probs=33.5
Q ss_pred cccChHHHHHHhhhcCccceEEEeecCCCCCCCccchH-----------------------------HHHHHhhcCCCCC
Q 000835 178 SVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFD-----------------------------ILVDKISQTDLNT 228 (1263)
Q Consensus 178 ~V~T~~Ev~~~~~~~g~~l~Y~RiPitd~~~P~~~~iD-----------------------------~fi~~v~~~p~~~ 228 (1263)
+.+|+.|.-+.-....-++.|+.+|+.+.....+..+. .+++.+.+. + .
T Consensus 48 DLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~-~-~ 125 (164)
T PF13350_consen 48 DLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADA-P-G 125 (164)
T ss_dssp E-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-T-T--
T ss_pred ECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccC-C-C
Confidence 56677777765211122456888888887777433332 122223333 3 6
Q ss_pred eEEEEcCCCCCchHHHHHHHHH
Q 000835 229 EVIFNCQMGRGRTTTGMVIATL 250 (1263)
Q Consensus 229 ~l~FhCq~G~GRTTt~Mvm~~L 250 (1263)
+++|||.+|+-||-++.++...
T Consensus 126 p~l~HC~aGKDRTG~~~alll~ 147 (164)
T PF13350_consen 126 PVLFHCTAGKDRTGVVAALLLS 147 (164)
T ss_dssp -EEEE-SSSSSHHHHHHHHHHH
T ss_pred cEEEECCCCCccHHHHHHHHHH
Confidence 9999999999999776665533
No 54
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=93.29 E-value=0.08 Score=62.77 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=47.1
Q ss_pred eEEEeecCCCCCCCcc-cHHHHHHHHHh----cCCCCeEEEecCCCCCcchhHHHHHHHHHHHHhc
Q 000835 616 KYARVPITDGKAPKTS-DFDMLAVNIAS----ASKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDY 676 (1263)
Q Consensus 616 ~Y~RIPitD~~aP~~~-d~D~fi~~v~~----~~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~~ 676 (1263)
.|+=+.=|||+-|.+. .+-.|++-|.. +....++++||.+|.|||-|++||-.|+-.....
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~ 481 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREK 481 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhc
Confidence 5777888999999765 56667766633 2355689999999999999999998887666553
No 55
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=93.26 E-value=0.11 Score=61.06 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 227 NTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 227 ~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
..++++||.+|.|||-+|.++-.++..
T Consensus 247 ~~PIvVHCsaGvGRTGtfcaid~~l~~ 273 (323)
T PHA02746 247 LGPIVVHCSAGIGRAGTFCAIDNALEQ 273 (323)
T ss_pred CCCEEEEcCCCCCcchhHHHHHHHHHH
Confidence 379999999999999999988877664
No 56
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=92.85 E-value=0.17 Score=53.25 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=33.9
Q ss_pred CccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHH-----------HHHHHh---------------c-CCCCeE
Q 000835 597 SVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDML-----------AVNIAS---------------A-SKDTAF 649 (1263)
Q Consensus 597 ~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~f-----------i~~v~~---------------~-~~~~~l 649 (1263)
|-.|+.|.-+.......++.|+.+|+.+.....+..+..+ ...+.. + .++.++
T Consensus 48 DLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~ 127 (164)
T PF13350_consen 48 DLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPV 127 (164)
T ss_dssp E-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--E
T ss_pred ECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcE
Confidence 4578888888765555699999999998877754333222 122211 1 123699
Q ss_pred EEecCCCCCcchhHHHHH
Q 000835 650 VFNCQMGRGRTTTGTVIA 667 (1263)
Q Consensus 650 ~FhCq~G~GRTTt~Mvi~ 667 (1263)
+|||.+|+-||-.+.++.
T Consensus 128 l~HC~aGKDRTG~~~all 145 (164)
T PF13350_consen 128 LFHCTAGKDRTGVVAALL 145 (164)
T ss_dssp EEE-SSSSSHHHHHHHHH
T ss_pred EEECCCCCccHHHHHHHH
Confidence 999999999986544433
No 57
>PHA02738 hypothetical protein; Provisional
Probab=92.76 E-value=0.17 Score=59.36 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 227 NTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 227 ~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
.+++++||.+|.|||-+|.++-.++..
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~ 253 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISR 253 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHH
Confidence 468999999999999999998887765
No 58
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=92.27 E-value=0.16 Score=62.13 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=35.1
Q ss_pred eecCCCCCCCc-ccHHHHHHHHHhcC----------CCCeEEEecCCCCCcchhHHHHHH
Q 000835 620 VPITDGKAPKT-SDFDMLAVNIASAS----------KDTAFVFNCQMGRGRTTTGTVIAC 668 (1263)
Q Consensus 620 IPitD~~aP~~-~d~D~fi~~v~~~~----------~~~~l~FhCq~G~GRTTt~Mvi~~ 668 (1263)
.-=|||..|.. +.+..|++.++... .....++||.+|.|||-|+++++.
T Consensus 429 TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~l 488 (535)
T PRK15375 429 KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALV 488 (535)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHH
Confidence 34489888754 45777877776542 112238999999999999999865
No 59
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=92.27 E-value=0.23 Score=58.30 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=40.1
Q ss_pred CceEEEeecCCCCCCC-cccHHHHHHHHHhc-----------C-CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000835 614 PIKYARVPITDGKAPK-TSDFDMLAVNIASA-----------S-KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 674 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~-~~d~D~fi~~v~~~-----------~-~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~ 674 (1263)
.+.|.-= ||++.|. +..|-.|+..++.. + ..+++++||.+|.|||-|+.++-.++.+..
T Consensus 204 h~~y~~W--pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~ 275 (323)
T PHA02746 204 HFWFPDW--PDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLE 275 (323)
T ss_pred EEEECCC--CCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHH
Confidence 3344444 5888875 34566666555431 1 237999999999999999988877775543
No 60
>PHA02738 hypothetical protein; Provisional
Probab=92.16 E-value=0.15 Score=59.80 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=40.6
Q ss_pred EEEeecCCCCCCCc-ccHHHHHHHHHhc---------C------CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000835 617 YARVPITDGKAPKT-SDFDMLAVNIASA---------S------KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 674 (1263)
Q Consensus 617 Y~RIPitD~~aP~~-~d~D~fi~~v~~~---------~------~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~ 674 (1263)
|+=..=||+..|.. .+|-.|+..|+.. . ..+++++||.+|.|||-||.++-.++....
T Consensus 182 ~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~ 255 (320)
T PHA02738 182 FNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFD 255 (320)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHH
Confidence 33344468888853 4666666655531 0 146899999999999999998888775553
No 61
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=91.91 E-value=0.2 Score=57.81 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=42.2
Q ss_pred CceEEEeecCCCCCCCcc-cHHHHHHHHHhc-CCCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 614 PIKYARVPITDGKAPKTS-DFDMLAVNIASA-SKDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~~~-d~D~fi~~v~~~-~~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
+++|.+||+.|.-.+.-. .|+.-++|+-.+ ..+.-..+||++|.+|++|..+-|.|.
T Consensus 121 ~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~ 179 (285)
T KOG1716|consen 121 GIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMK 179 (285)
T ss_pred CceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHH
Confidence 889999999994332222 255555666555 378889999999999999977777665
No 62
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=91.77 E-value=0.18 Score=58.88 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=37.3
Q ss_pred ecCCCCCCC-cccHHHHHHHHHhc---------C---CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 621 PITDGKAPK-TSDFDMLAVNIASA---------S---KDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 621 PitD~~aP~-~~d~D~fi~~v~~~---------~---~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
-=||+..|. ..+|-.|+..++.. + ..+++++||.+|.|||-||.++-.++.+.
T Consensus 191 ~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l 256 (312)
T PHA02747 191 EWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQL 256 (312)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHH
Confidence 335888885 34566666555321 1 23689999999999999999887766544
No 63
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=91.55 E-value=0.25 Score=55.60 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=47.5
Q ss_pred CCceEEEeecCCCCCCCccc-HHHHHHHHHhc-CCCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000835 613 FPIKYARVPITDGKAPKTSD-FDMLAVNIASA-SKDTAFVFNCQMGRGRTTTGTVIACLLKLRID 675 (1263)
Q Consensus 613 ~gl~Y~RIPitD~~aP~~~d-~D~fi~~v~~~-~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~ 675 (1263)
..+.|.+|||.||-.-.-+. |-.=|+|+-.+ .++...++||.+|..|+.|-.|.|.|-..+++
T Consensus 216 g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~ls 280 (343)
T KOG1717|consen 216 GEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLS 280 (343)
T ss_pred CceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccc
Confidence 37789999999996543222 22334677666 48899999999999999998888887766554
No 64
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=91.45 E-value=0.22 Score=64.58 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=37.3
Q ss_pred ecCCCCCCCcc-cHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 621 PITDGKAPKTS-DFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 621 PitD~~aP~~~-d~D~fi~~v~~~~--~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
.=+||+-|++. +|-.|++.|++.- .++++++||.+|.|||-+-..|=.+++..
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~ll 1090 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLL 1090 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHH
Confidence 44788877643 5555555566653 47899999999999999866665555443
No 65
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=90.54 E-value=0.31 Score=53.11 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=38.6
Q ss_pred ecCCCCCCCccchHHHHHHhhc---C--CCCCeEEEEcCCCCCchHHHHHHHHHHHHhh
Q 000835 202 PVTDEKSPKEQDFDILVDKISQ---T--DLNTEVIFNCQMGRGRTTTGMVIATLVYLNR 255 (1263)
Q Consensus 202 Pitd~~~P~~~~iD~fi~~v~~---~--p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~ 255 (1263)
.-++++.| .+.+.|+.+++. . +.+.++++||..|.|||.+|.++..++..-.
T Consensus 142 ~W~~~~~P--~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~ 198 (235)
T PF00102_consen 142 NWPDDGVP--PSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLK 198 (235)
T ss_dssp SSSSSSSG--SSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHH
T ss_pred eccccccc--cccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccc
Confidence 44577777 345555555543 3 3789999999999999999999988877643
No 66
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=90.46 E-value=0.16 Score=66.27 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=44.2
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 614 PIKYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~---~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
.+.|..=|.-...+....-++..+...+.. ..+..+++||..|.|||-+|..|..++.+.
T Consensus 983 qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~ 1045 (1087)
T KOG4228|consen 983 QFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERM 1045 (1087)
T ss_pred EEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHH
Confidence 566777777775555555566555555443 358899999999999999999999887554
No 67
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=90.24 E-value=0.32 Score=54.73 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=46.5
Q ss_pred cceEEEeecCCCCCCCc-cchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKE-QDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVY 252 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~-~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 252 (1263)
...|.+|||.||-.-.- .-|-.=|.||-+. .++....+||-+|+.|+-|-.|.|.|=+
T Consensus 217 ~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 217 EFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred ceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 35699999999987653 3345567888765 4889999999999999999999987744
No 68
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=89.46 E-value=0.4 Score=52.31 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=42.9
Q ss_pred CceEEEeecCCCCCC-CcccHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000835 614 PIKYARVPITDGKAP-KTSDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 675 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP-~~~d~D~fi~~v~~~~--~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~ 675 (1263)
.+.|.. -+|++.| ..+.+-.|++.++... ....+++||..|.|||-++.++..++.....
T Consensus 137 ~~~~~~--W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~ 199 (235)
T PF00102_consen 137 HFHYTN--WPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKK 199 (235)
T ss_dssp EEEEES--SSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHH
T ss_pred ceeeee--ccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhcccccc
Confidence 344554 4477877 3445555555555443 7899999999999999999988888766554
No 69
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=89.27 E-value=0.3 Score=63.94 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=47.7
Q ss_pred eEEEeecCCCCCCCc-ccHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000835 616 KYARVPITDGKAPKT-SDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 675 (1263)
Q Consensus 616 ~Y~RIPitD~~aP~~-~d~D~fi~~v~~~~--~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~ 675 (1263)
.||=--=+||+.|.. ..+=.|+..++... ...++|+||.+|.|||-+|.+|=.|+.+...
T Consensus 697 qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~ 759 (1087)
T KOG4228|consen 697 QFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLEC 759 (1087)
T ss_pred eeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHh
Confidence 345555689999987 67777777777764 5689999999999999999999888866654
No 70
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=87.99 E-value=0.76 Score=48.90 Aligned_cols=59 Identities=29% Similarity=0.485 Sum_probs=46.9
Q ss_pred CceEEEeecCCC-CCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 614 PIKYARVPITDG-KAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 614 gl~Y~RIPitD~-~aP~~~d~D~fi~~v~~~~-~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
++.|.+||+.|. .++...-||.--+.+.+.. ++..-++||-+|..|+.+ +.++.|++.+
T Consensus 60 ~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAs-LClAYLmK~~ 120 (198)
T KOG1718|consen 60 DIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSAS-LCLAYLMKYH 120 (198)
T ss_pred CceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHH-HHHHHHHHHc
Confidence 889999999997 5666777777777777764 778899999999999976 5666666443
No 71
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=85.82 E-value=0.68 Score=49.30 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=29.4
Q ss_pred CceEEEeecCCCCC----CCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 614 PIKYARVPITDGKA----PKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 614 gl~Y~RIPitD~~a----P~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
+++++.+|+..... +.++.+.+.++.+... .+-++.+||..|..||.+ |++||-
T Consensus 56 ~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~--vvg~lR 113 (164)
T PF03162_consen 56 GIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGL--VVGCLR 113 (164)
T ss_dssp T-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHH--HHHHHH
T ss_pred CceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhh--HHHHHH
Confidence 88999999987765 4566666666665443 356899999999998855 555554
No 72
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=85.66 E-value=0.48 Score=57.65 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=43.2
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 616 KYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 616 ~Y~RIPitD~~aP~~~d~D~fi~~v~~~---~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
+-.++|.+||.+|.-+.+-.|-+-+-+. .+..-.++||.+|+|||++ ||++-|+..-
T Consensus 74 ~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~-~icA~L~~~~ 133 (434)
T KOG2283|consen 74 RVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV-MICAYLIYSG 133 (434)
T ss_pred ceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE-EEeHHHHhhh
Confidence 3456999999999988776666544332 3556789999999999987 8888777443
No 73
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=83.63 E-value=1.7 Score=52.12 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=38.5
Q ss_pred ceEEEeecCCCCCCCccchHHHHHHhh-----cCCCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000835 196 VDYERVPVTDEKSPKEQDFDILVDKIS-----QTDLNTEVIFNCQMGRGRTTTGMVIATLVY 252 (1263)
Q Consensus 196 l~Y~RiPitd~~~P~~~~iD~fi~~v~-----~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 252 (1263)
.+|+=.--+|++.|+ +...++++++ .-|...++++||.+|.|||-|+.++-..+.
T Consensus 265 ~~~~~~~WPd~~~p~--~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~ 324 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPD--SVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALI 324 (415)
T ss_pred EEEeeCCCccccCCc--chHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHH
Confidence 346655566775554 4555666663 234578999999999999999998884444
No 74
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=79.55 E-value=8.1 Score=39.93 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=47.0
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHH
Q 000835 614 PIKYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIA 667 (1263)
Q Consensus 614 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~---~~~~~l~FhCq~G~GRTTt~Mvi~ 667 (1263)
|++-.-.|..|...|..+.+|..++.++.. .++..+-+||-+|.||.-.-.+++
T Consensus 62 GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvala 118 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALA 118 (173)
T ss_pred CceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHH
Confidence 999999999999999999999999988765 478899999999999987644444
No 75
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=77.69 E-value=2.2 Score=43.89 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=47.4
Q ss_pred cceEEEeecCCCCCCCccchHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHHH
Q 000835 195 LVDYERVPVTDEKSPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIAT 249 (1263)
Q Consensus 195 ~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~---p~~~~l~FhCq~G~GRTTt~Mvm~~ 249 (1263)
+|+-.-.|-.|..+|..+.+|..++.++.- .++..+-+||-+|.||.-.-.+++.
T Consensus 62 GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalal 119 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALAL 119 (173)
T ss_pred CceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHH
Confidence 456888999999999999999999998743 4789999999999999988777663
No 76
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.38 E-value=13 Score=37.97 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=52.1
Q ss_pred CeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEeecCCCCCCCccchHHHHHHhhcCCCCCeEEEE
Q 000835 154 NKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFN 233 (1263)
Q Consensus 154 g~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~Fh 233 (1263)
|.-.+...-+||.-..+ .+-..+++..+.. +|.|.-||++... +++++|+.|..-+.++ .-++.-|
T Consensus 28 GFksiI~nRPDgEe~~Q------P~~~~i~~aa~~a-----Gl~y~~iPV~~~~-iT~~dV~~f~~Al~ea--egPVlay 93 (130)
T COG3453 28 GFKSIICNRPDGEEPGQ------PGFAAIAAAAEAA-----GLTYTHIPVTGGG-ITEADVEAFQRALDEA--EGPVLAY 93 (130)
T ss_pred ccceecccCCCCCCCCC------CChHHHHHHHHhc-----CCceEEeecCCCC-CCHHHHHHHHHHHHHh--CCCEEee
Confidence 44445555556543222 2344566666655 5669999999765 7899999999999887 5678889
Q ss_pred cCCCCCchHH
Q 000835 234 CQMGRGRTTT 243 (1263)
Q Consensus 234 Cq~G~GRTTt 243 (1263)
|+.| .|+|+
T Consensus 94 CrsG-tRs~~ 102 (130)
T COG3453 94 CRSG-TRSLN 102 (130)
T ss_pred ecCC-chHHH
Confidence 9999 45554
No 77
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=76.87 E-value=3.5 Score=44.15 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=44.9
Q ss_pred cceEEEeecCCCC-CCCccchHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000835 195 LVDYERVPVTDEK-SPKEQDFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVYLN 254 (1263)
Q Consensus 195 ~l~Y~RiPitd~~-~P~~~~iD~fi~~v~~~p-~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 254 (1263)
+++|.+||+.|+. ++.-.-||..-+.|.+.. ++..-.+||-||+.|+-.-. |+-||+.+
T Consensus 60 ~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLC-lAYLmK~~ 120 (198)
T KOG1718|consen 60 DIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLC-LAYLMKYH 120 (198)
T ss_pred CceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHH-HHHHHHHc
Confidence 3559999999974 455677888888888765 67888999999999987544 44466654
No 78
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=76.74 E-value=5.1 Score=48.03 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=38.1
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHHH-----hcCCCCeEEEecCCCCCcchhHHHHHHHHHH
Q 000835 616 KYARVPITDGKAPKTSDFDMLAVNIA-----SASKDTAFVFNCQMGRGRTTTGTVIACLLKL 672 (1263)
Q Consensus 616 ~Y~RIPitD~~aP~~~d~D~fi~~v~-----~~~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~ 672 (1263)
.|+=.--+|++.|. ++..++.+++ ..+...++++||.+|.|||-|+..+-..+..
T Consensus 266 ~~~~~~WPd~~~p~--~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~ 325 (415)
T KOG0789|consen 266 HYHYINWPDHGAPD--SVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIE 325 (415)
T ss_pred EEeeCCCccccCCc--chHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 45555558886665 3334455553 2345789999999999999999988855544
No 79
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=68.56 E-value=2.9 Score=51.14 Aligned_cols=55 Identities=25% Similarity=0.460 Sum_probs=37.9
Q ss_pred EEEeecCCCCCCCccchHHHHHHhh---cCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 198 YERVPVTDEKSPKEQDFDILVDKIS---QTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 198 Y~RiPitd~~~P~~~~iD~fi~~v~---~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
-.++|.+||.+|.-+.+=.|-+=+. +.++.--.++||.+|+|||++ ||++-|+..
T Consensus 75 V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~-~icA~L~~~ 132 (434)
T KOG2283|consen 75 VARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV-MICAYLIYS 132 (434)
T ss_pred eeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE-EEeHHHHhh
Confidence 4568999999998655544433222 123556779999999999986 556656665
No 80
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.19 E-value=28 Score=35.65 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=44.7
Q ss_pred cCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHH
Q 000835 599 QTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 671 (1263)
Q Consensus 599 ~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~~Li~ 671 (1263)
..+++..+.. |+.|.=|||+- .-+.++||+.|...+-++. .+..-||..| .|+|+ +|.+..
T Consensus 48 ~~i~~aa~~a-----Gl~y~~iPV~~-~~iT~~dV~~f~~Al~eae--gPVlayCrsG-tRs~~---ly~~~~ 108 (130)
T COG3453 48 AAIAAAAEAA-----GLTYTHIPVTG-GGITEADVEAFQRALDEAE--GPVLAYCRSG-TRSLN---LYGLGE 108 (130)
T ss_pred HHHHHHHHhc-----CCceEEeecCC-CCCCHHHHHHHHHHHHHhC--CCEEeeecCC-chHHH---HHHHHH
Confidence 3445555655 99999999998 4589999999988886653 4688899999 45543 454443
No 81
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=55.15 E-value=20 Score=37.09 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=38.0
Q ss_pred CCccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhc-C-CCCeEEEecCCCCCcchhHHHH
Q 000835 596 ESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASA-S-KDTAFVFNCQMGRGRTTTGTVI 666 (1263)
Q Consensus 596 ~~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~-~-~~~~l~FhCq~G~GRTTt~Mvi 666 (1263)
=||.||+|+-.-+....+.+=|.-. ++..+-.+. .|++.+... | .+.-|+|+|+.|+ |..+|--+
T Consensus 42 lDVRepeEfk~gh~~~siNiPy~~~--~~~~~l~~~---eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~A~~~ 108 (136)
T KOG1530|consen 42 LDVREPEEFKQGHIPASINIPYMSR--PGAGALKNP---EFLKQVGSSKPPHDKEIIFGCASGV-RSLKATKI 108 (136)
T ss_pred EeecCHHHhhccCCcceEecccccc--ccccccCCH---HHHHHhcccCCCCCCcEEEEeccCc-chhHHHHH
Confidence 3789999988877553333333211 222222232 456777554 4 4558999999994 55555433
No 82
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=54.02 E-value=9.8 Score=48.15 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=37.3
Q ss_pred EEEeecCCCCCCCccchHHHHHHhhcCC-----CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000835 198 YERVPVTDEKSPKEQDFDILVDKISQTD-----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 254 (1263)
Q Consensus 198 Y~RiPitd~~~P~~~~iD~fi~~v~~~p-----~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 254 (1263)
||=+-=++++-|. .--.+++|=|+.. ..-+|++||..|.|||.|... .||+.|+
T Consensus 895 FHfLSWp~egvPa--sarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yil-iDmvl~R 953 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPA--SARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYIL-IDMVLNR 953 (1004)
T ss_pred eeeecccccCCcc--chHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeee-HHHHHHH
Confidence 5555555666655 3345566655443 568999999999999999854 4677764
No 83
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=48.70 E-value=27 Score=36.19 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=36.0
Q ss_pred cccChHHHHHHhhhcCccceEEEeecCCCCCCCccchHHHHHHhhcC-C-CCCeEEEEcCCCCCchHHHHHHH
Q 000835 178 SVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT-D-LNTEVIFNCQMGRGRTTTGMVIA 248 (1263)
Q Consensus 178 ~V~T~~Ev~~~~~~~g~~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~-p-~~~~l~FhCq~G~GRTTt~Mvm~ 248 (1263)
||+|++|+=.-.....++|-|--. ++...-.+ -.|.+-+... | .+.-|+|+|+.|+ |+++|--++
T Consensus 43 DVRepeEfk~gh~~~siNiPy~~~--~~~~~l~~---~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~A~~~l 109 (136)
T KOG1530|consen 43 DVREPEEFKQGHIPASINIPYMSR--PGAGALKN---PEFLKQVGSSKPPHDKEIIFGCASGV-RSLKATKIL 109 (136)
T ss_pred eecCHHHhhccCCcceEecccccc--ccccccCC---HHHHHHhcccCCCCCCcEEEEeccCc-chhHHHHHH
Confidence 788999986643322333222111 22222222 2466666544 4 5569999999995 666665443
No 84
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=44.06 E-value=22 Score=40.44 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=28.1
Q ss_pred cchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 212 QDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 212 ~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
+.+-.++.++.+. .+-++.+||.+|+=||.++.+++-.+..
T Consensus 122 e~~~~~~~l~~~~-e~~PvL~HC~~GkdRTGl~~al~r~~~~ 162 (249)
T COG2365 122 ERLVELLQLLADA-ENGPVLIHCTAGKDRTGLVAALYRKLVG 162 (249)
T ss_pred HHHHHHHHHHhhc-ccCCEEEecCCCCcchHHHHHHHHHHhC
Confidence 3333344444333 4689999999999999888887755543
No 85
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=42.59 E-value=52 Score=37.37 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=44.1
Q ss_pred cceEEEeecCCCC----CCCccchHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHHHHHHHhh
Q 000835 195 LVDYERVPVTDEK----SPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATLVYLNR 255 (1263)
Q Consensus 195 ~l~Y~RiPitd~~----~P~~~~iD~fi~~v~~~---p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~ 255 (1263)
+|+|+-|-|..++ -|.....|.-|...-++ ..+-++..||..|.=||.+-.-+.--+++|.
T Consensus 109 ~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~ 176 (249)
T KOG1572|consen 109 GIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWS 176 (249)
T ss_pred CceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccc
Confidence 4557777777777 78888888877665542 4889999999999999866555444466643
No 86
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=41.23 E-value=58 Score=30.99 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=17.5
Q ss_pred HhhcCCCCCeEEEEcCCCCCchHH
Q 000835 220 KISQTDLNTEVIFNCQMGRGRTTT 243 (1263)
Q Consensus 220 ~v~~~p~~~~l~FhCq~G~GRTTt 243 (1263)
....+|++..++|+|..| +|+..
T Consensus 54 ~~~~~~~~~~ivv~C~~G-~rs~~ 76 (100)
T cd01523 54 ILDQLPDDQEVTVICAKE-GSSQF 76 (100)
T ss_pred HHhhCCCCCeEEEEcCCC-CcHHH
Confidence 455678889999999998 46543
No 87
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=39.00 E-value=1.7e+02 Score=32.83 Aligned_cols=83 Identities=17% Similarity=0.077 Sum_probs=53.3
Q ss_pred HHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEeecCCCCCCCccchHHHHHHhhcC
Q 000835 145 IIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT 224 (1263)
Q Consensus 145 vl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~ 224 (1263)
.++.+++.|-.+.+..++..+. ..+..-..++++.....| ++..+++-|.. ...|+++..+++.+++.
T Consensus 120 ~i~~a~~~G~~v~~~~~~~~~~---------~~~~~~l~~~~~~~~~~g--~~~i~l~Dt~G-~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 120 AIEAAKEAGLEVEGSLEDAFGC---------KTDPEYVLEVAKALEEAG--ADEISLKDTVG-LATPEEVAELVKALREA 187 (265)
T ss_pred HHHHHHHCCCeEEEEEEeecCC---------CCCHHHHHHHHHHHHHcC--CCEEEechhcC-CcCHHHHHHHHHHHHHh
Confidence 3567787787776665432110 122233445555544444 55888888855 58899999999999987
Q ss_pred CCCCeEEEEcCCCCC
Q 000835 225 DLNTEVIFNCQMGRG 239 (1263)
Q Consensus 225 p~~~~l~FhCq~G~G 239 (1263)
-++..|.|||+--.|
T Consensus 188 ~~~~~~~~H~Hn~~g 202 (265)
T cd03174 188 LPDVPLGLHTHNTLG 202 (265)
T ss_pred CCCCeEEEEeCCCCC
Confidence 555788777776553
No 88
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=38.71 E-value=42 Score=42.95 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=41.3
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHHHh---c--CCCCeEEEecCCCCCcchhHHHHHHHHHHHHhcCCC
Q 000835 616 KYARVPITDGKAPKTSDFDMLAVNIAS---A--SKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRP 679 (1263)
Q Consensus 616 ~Y~RIPitD~~aP~~~d~D~fi~~v~~---~--~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~~g~~ 679 (1263)
.||=+-=+++..|.-. ..+++|-|+ . ....++++||..|-|||-|.. +.||++..+.+|..
T Consensus 894 QFHfLSWp~egvPasa--rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yi-liDmvl~Rm~kGak 959 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASA--RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYI-LIDMVLNRMAKGAK 959 (1004)
T ss_pred eeeeecccccCCccch--HHHHHHHHHhhhhccCCCCceEEEccCCCCccceee-eHHHHHHHHhccch
Confidence 3455566677766544 344555444 3 367899999999999999864 45777777766654
No 89
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=34.58 E-value=53 Score=31.36 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.4
Q ss_pred cCCCCeEEEecCCCCCcchhH
Q 000835 643 ASKDTAFVFNCQMGRGRTTTG 663 (1263)
Q Consensus 643 ~~~~~~l~FhCq~G~GRTTt~ 663 (1263)
.+++..++|.|+.| +|+..+
T Consensus 58 ~~~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 58 LLKGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred hcCCCEEEEECCCc-hhHHHH
Confidence 36788899999988 666544
No 90
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=33.90 E-value=44 Score=38.04 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=26.6
Q ss_pred HHHHhhcCCC-CceEEeccCCCCcchhHHHHHHHHHhh
Q 000835 1077 AIQYCKDDSA-GCYLFVSHTGFGGVAYAMAIICLRLDA 1113 (1263)
Q Consensus 1077 ~l~~~~~~~~-~~~vfnCqmGrGrtTt~Mvia~L~~~~ 1113 (1263)
.++.-+.+.. ..+++.|.+|.-|| |+|+||++...
T Consensus 126 ~~~~l~~~~e~~PvL~HC~~GkdRT--Gl~~al~r~~~ 161 (249)
T COG2365 126 ELLQLLADAENGPVLIHCTAGKDRT--GLVAALYRKLV 161 (249)
T ss_pred HHHHHHhhcccCCEEEecCCCCcch--HHHHHHHHHHh
Confidence 3333333444 89999999999999 99999998543
No 91
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=29.80 E-value=2.4e+02 Score=25.45 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhhhccCHHHHHHHHHHHhh------hhccChhHHHHHHHHHHHHHHH
Q 000835 746 CREALDAIIDRCSALQNIREAVLHYRKVFN------QQHVEPRVRMVALSRGAEYLER 797 (1263)
Q Consensus 746 ~K~~VD~aID~cs~~~nLReaI~~yr~~~~------~~a~~~~~r~~~~~r~l~yLeR 797 (1263)
+...+..|+. |..-.|..+||-.|++.+. ....++..|..+..+..+||.|
T Consensus 5 A~~~~~~Av~-~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R 61 (69)
T PF04212_consen 5 AIELIKKAVE-ADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLER 61 (69)
T ss_dssp HHHHHHHHHH-HHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3444555554 4457899999988877655 3344666678889999999988
No 92
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=27.99 E-value=34 Score=33.04 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=22.3
Q ss_pred cceEEEECCeeeecccCCCcccccccccCChhHHHHHHHHHHH
Q 000835 957 EEAVVYINGTPFVLRELNKPVDTLKHVGITGPVVEHMEARLKE 999 (1263)
Q Consensus 957 EEpVlyi~g~p~vLR~~~~p~~n~e~~Gi~~~~vE~mE~~lk~ 999 (1263)
++|+|+|+||||.|.++.+ .++-|+.|=.+=|+
T Consensus 39 d~p~V~V~Gr~~~~~eVtq----------~p~LV~qMT~~EKE 71 (86)
T PF11521_consen 39 DDPTVMVAGRPYPYSEVTQ----------RPELVAQMTPEEKE 71 (86)
T ss_dssp SS-EEEETTEEEEHHHHHH-----------HHHHHHS-HHHHH
T ss_pred cCceEEECCEEeehhhcCc----------chHHHHHcCHHHHH
Confidence 4899999999999999742 15666666554443
No 93
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.48 E-value=2.4e+02 Score=32.78 Aligned_cols=116 Identities=11% Similarity=-0.023 Sum_probs=68.3
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEe
Q 000835 122 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 201 (1263)
Q Consensus 122 ~N~~~~Gis~~~ve~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~Ri 201 (1263)
.+..+.+.|.+++.+ .-.++++.++..|-.+.+.-++ -+. |. .+ +..-..++++..... +++..+|
T Consensus 101 h~~~~~~~t~~e~l~----~~~~~i~~a~~~G~~v~~~~~d-~~~--~~--r~---~~~~~~~~~~~~~~~--G~~~i~l 166 (280)
T cd07945 101 HCTEQLRKTPEEHFA----DIREVIEYAIKNGIEVNIYLED-WSN--GM--RD---SPDYVFQLVDFLSDL--PIKRIML 166 (280)
T ss_pred HHHHHHCcCHHHHHH----HHHHHHHHHHhCCCEEEEEEEe-CCC--CC--cC---CHHHHHHHHHHHHHc--CCCEEEe
Confidence 455568888777643 2234577888888787777653 111 10 11 112333444444333 4457777
Q ss_pred ecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHHhhcc
Q 000835 202 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRIG 257 (1263)
Q Consensus 202 Pitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~~~ 257 (1263)
+-|-.. -.|.++-.++..+++.-++..|.|||+.-. +|.++-.+..-+.+
T Consensus 167 ~DT~G~-~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~-----Gla~AN~laA~~aG 216 (280)
T cd07945 167 PDTLGI-LSPFETYTYISDMVKRYPNLHFDFHAHNDY-----DLAVANVLAAVKAG 216 (280)
T ss_pred cCCCCC-CCHHHHHHHHHHHHhhCCCCeEEEEeCCCC-----CHHHHHHHHHHHhC
Confidence 777655 457778888888876545677888887655 45555555544444
No 94
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=27.39 E-value=60 Score=34.18 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=22.0
Q ss_pred EEEEcCCCCCchHHHHHHHHHHHH
Q 000835 230 VIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 230 l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
.+.++..|.|+||+++.++..+..
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~ 25 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALAR 25 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCccHHHHHHHHHhcccc
Confidence 478999999999999999998887
No 95
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=27.36 E-value=3.6e+02 Score=31.23 Aligned_cols=102 Identities=12% Similarity=-0.045 Sum_probs=55.4
Q ss_pred ccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEeecC
Q 000835 125 EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVT 204 (1263)
Q Consensus 125 ~~~Gis~~~ve~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~RiPit 204 (1263)
.|.+.+.+++.+.- .+.++.+++.|..+.++-...-+.... ...+..-..++++.+.. ++++..+|+-|
T Consensus 103 ~~~~~s~~~~~~~~----~~~v~~ak~~G~~v~~~i~~~f~~~~~-----~~~~~~~~~~~~~~~~~--~Ga~~i~l~DT 171 (274)
T cd07938 103 KNINCSIAESLERF----EPVAELAKAAGLRVRGYVSTAFGCPYE-----GEVPPERVAEVAERLLD--LGCDEISLGDT 171 (274)
T ss_pred HHcCCCHHHHHHHH----HHHHHHHHHCCCeEEEEEEeEecCCCC-----CCCCHHHHHHHHHHHHH--cCCCEEEECCC
Confidence 34777765543222 234567888887775544322111000 01122223344444433 34557777777
Q ss_pred CCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCC
Q 000835 205 DEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGR 238 (1263)
Q Consensus 205 d~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~ 238 (1263)
-.. -.|.++-.++..+++.-++..|.|||+.-.
T Consensus 172 ~G~-~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 172 IGV-ATPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred CCc-cCHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 766 457778778888776434567777777654
No 96
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=27.35 E-value=36 Score=41.30 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=46.0
Q ss_pred cceEEEeecCCCC-CCCccchHHHHHHhhcC-----CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000835 195 LVDYERVPVTDEK-SPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVY 252 (1263)
Q Consensus 195 ~l~Y~RiPitd~~-~P~~~~iD~fi~~v~~~-----p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 252 (1263)
++.|.++-..-+. .|....++.|++.+... .++.-+.+||-.|.-||..-++ ..|+.
T Consensus 86 g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~-~yL~~ 148 (393)
T KOG2386|consen 86 GVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLIC-AYLAD 148 (393)
T ss_pred ceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeee-eeeee
Confidence 4559999988888 99999999999998753 3678899999999999986444 44544
No 97
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.25 E-value=2.4e+02 Score=33.93 Aligned_cols=105 Identities=7% Similarity=-0.119 Sum_probs=58.8
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEe
Q 000835 122 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 201 (1263)
Q Consensus 122 ~N~~~~Gis~~~ve~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~Ri 201 (1263)
.+..|.++|.+++.+ .-.++++.++..|..+.++-....|-... ...++.-..++++.+...| ++..+|
T Consensus 148 h~~~n~~~t~~e~l~----~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~-----~r~~~~~l~~~~~~~~~~G--ad~I~l 216 (347)
T PLN02746 148 FSKSNINCSIEESLV----RYREVALAAKKHSIPVRGYVSCVVGCPIE-----GPVPPSKVAYVAKELYDMG--CYEISL 216 (347)
T ss_pred HHHHHhCCCHHHHHH----HHHHHHHHHHHcCCeEEEEEEeeecCCcc-----CCCCHHHHHHHHHHHHHcC--CCEEEe
Confidence 455568888877643 12345778888887775444332221111 1113344556666654444 447777
Q ss_pred ecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCC
Q 000835 202 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGR 238 (1263)
Q Consensus 202 Pitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~ 238 (1263)
+-|-... .|.++-.++..+++.-+...|.|||+.-.
T Consensus 217 ~DT~G~a-~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 252 (347)
T PLN02746 217 GDTIGVG-TPGTVVPMLEAVMAVVPVDKLAVHFHDTY 252 (347)
T ss_pred cCCcCCc-CHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 7776654 47777778887775423344555555433
No 98
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=26.23 E-value=2.6e+02 Score=32.50 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=65.1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeecCCCccccccccccCCCccCHHHHHhcccCCCCCceEEEeec
Q 000835 543 LEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPI 622 (1263)
Q Consensus 543 ~~~~Gis~~~VE~~E~~Lk~dil~e~~~~~g~~l~~~e~~~~~~~~~we~v~~~~V~T~~Ev~~~~~~~~~gl~Y~RIPi 622 (1263)
..|.+.+++++.++= .+++..++..+-.+.+.-++ -+. |. .+.++ -..++++.. ...|.+..+|+=
T Consensus 103 ~~~~~~t~~e~l~~~----~~~i~~a~~~G~~v~~~~~d-~~~--~~--r~~~~---~~~~~~~~~--~~~G~~~i~l~D 168 (280)
T cd07945 103 TEQLRKTPEEHFADI----REVIEYAIKNGIEVNIYLED-WSN--GM--RDSPD---YVFQLVDFL--SDLPIKRIMLPD 168 (280)
T ss_pred HHHHCcCHHHHHHHH----HHHHHHHHhCCCEEEEEEEe-CCC--CC--cCCHH---HHHHHHHHH--HHcCCCEEEecC
Confidence 355678876664322 23355666666555554432 110 00 00111 122222222 223777777777
Q ss_pred CCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHHHHhcCC
Q 000835 623 TDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGR 678 (1263)
Q Consensus 623 tD~~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~~~~g~ 678 (1263)
|- +.-.|.++..++..+++..++..|.||||.-. +|.++-.+.-... |.
T Consensus 169 T~-G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~-----Gla~AN~laA~~a-Ga 217 (280)
T cd07945 169 TL-GILSPFETYTYISDMVKRYPNLHFDFHAHNDY-----DLAVANVLAAVKA-GI 217 (280)
T ss_pred CC-CCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCC-----CHHHHHHHHHHHh-CC
Confidence 77 46778889999999988766778888888765 5666666544433 43
No 99
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=25.44 E-value=1.6e+02 Score=33.70 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=43.1
Q ss_pred CceEEEeecCCCC----CCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHH
Q 000835 614 PIKYARVPITDGK----APKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLL 670 (1263)
Q Consensus 614 gl~Y~RIPitD~~----aP~~~d~D~fi~~v~~~---~~~~~l~FhCq~G~GRTTt~Mvi~~Li 670 (1263)
++.|+-|-|.-++ -|.....|..|...... ..+-++..||..|+=|| +.+++||-
T Consensus 109 ~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRt--g~lVgclR 170 (249)
T KOG1572|consen 109 GIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRT--GCLVGCLR 170 (249)
T ss_pred CceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcch--hhhHHHHH
Confidence 7788888888777 88888888888655443 37889999999988887 55777775
No 100
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=25.19 E-value=1.1e+02 Score=35.87 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=39.0
Q ss_pred HHHHHhhhcCccceEEEeecCCCCCCCccchHHHHHHhhcCC---CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 184 DVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTD---LNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 184 Ev~~~~~~~g~~l~Y~RiPitd~~~P~~~~iD~fi~~v~~~p---~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
+++......|.+ +|...|.. ++++-.++.-+...+ ....-++++..|.|.||++..++..+..
T Consensus 55 ~~~~~a~~~Ga~-~~l~~P~~------~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~ 120 (322)
T TIGR03815 55 ALWRAAAAVGAE-HVAVLPEA------EGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAAR 120 (322)
T ss_pred HHHHHHHHhChh-heeeCCCC------HHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHh
Confidence 344443334654 58887766 223233333332112 2356689999999999999999988764
No 101
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=25.14 E-value=3.7e+02 Score=31.31 Aligned_cols=108 Identities=11% Similarity=-0.052 Sum_probs=59.5
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccce-EEE
Q 000835 122 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVD-YER 200 (1263)
Q Consensus 122 ~N~~~~Gis~~~ve~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~-Y~R 200 (1263)
.|..|.|+|.+++.+ .-.++++.++..|-.+.++-|+.-- .+ ....-+.-.+++++.... .+++ -.+
T Consensus 101 ~~~~~~~~t~~e~l~----~~~~~v~~a~~~g~~v~~~~ed~~r--~d----~~~~v~~~~~~~~~~~~~--~G~~~~i~ 168 (279)
T cd07947 101 HIFKKLKMTREEAME----KYLEIVEEALDHGIKPRCHLEDITR--AD----IYGFVLPFVNKLMKLSKE--SGIPVKIR 168 (279)
T ss_pred HHHHHhCcCHHHHHH----HHHHHHHHHHHCCCeEEEEEEcccC--CC----cccchHHHHHHHHHHHHH--CCCCEEEE
Confidence 455568889888743 2345678888888787777643100 00 000111234444444322 3455 377
Q ss_pred eecCCCCC-CC-----ccchHHHHHHhhcC-C-CC--CeEEEEcCCCCCch
Q 000835 201 VPVTDEKS-PK-----EQDFDILVDKISQT-D-LN--TEVIFNCQMGRGRT 241 (1263)
Q Consensus 201 iPitd~~~-P~-----~~~iD~fi~~v~~~-p-~~--~~l~FhCq~G~GRT 241 (1263)
|+-|-..+ |. |+++..++..+++. + ++ -.+|+|+-.|.+=.
T Consensus 169 l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~A 219 (279)
T cd07947 169 LCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVA 219 (279)
T ss_pred eccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHH
Confidence 77776654 42 47888898888764 2 33 34566666665433
No 102
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=24.78 E-value=3.8e+02 Score=34.14 Aligned_cols=138 Identities=17% Similarity=0.264 Sum_probs=83.1
Q ss_pred cceeeccCCCHHHHHHHHHHhccC-CCCCcceEEEEEcCCCceEEEcCceeEeecCCCCCCccccCCCCHHHHHHHHHHH
Q 000835 63 LRVHGVAIPTIEGIRNVLKHIGAQ-KDGKRVQVLWISLREEPVVYINGRPFVLRDVGRPFSNLEYTGINRARVEQMEARL 141 (1263)
Q Consensus 63 l~v~G~aQPS~~gl~~vl~~L~~~-~~g~~~~ivwvdLREEph~yING~p~s~r~~~~~~~N~~~~Gis~~~ve~~E~rl 141 (1263)
.-+.|-||+|.+.+.+-+.+|... ..| .-+-|| .+|+| ||.|-. ...| . ||
T Consensus 62 aELAGGGq~t~e~~~~~i~ql~~~lepG---~t~qfN-----~ifld--pylw~~--------qig~---k-------rL 113 (717)
T COG4981 62 AELAGGGQVTEEIFTNAIEQLVSLLEPG---RTAQFN-----SIFLD--PYLWKL--------QIGG---K-------RL 113 (717)
T ss_pred eeecCCcccCHHHHHHHHHHHHhccCCC---ccceee-----EEEec--hHHhhh--------cCCh---H-------HH
Confidence 456799999999999999888653 123 334555 36665 676633 2233 3 33
Q ss_pred hHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEeecCCCCCCCccchHHHHHHh
Q 000835 142 KEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKI 221 (1263)
Q Consensus 142 k~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~RiPitd~~~P~~~~iD~fi~~v 221 (1263)
+.++...|-.|- |- -++....++..--|+.+.+...|+. |.-+ .|..||+.=+++
T Consensus 114 ----v~kara~G~~I~-------gv----vIsAGIP~le~A~ElI~~L~~~G~~--yv~f--------KPGtIeqI~svi 168 (717)
T COG4981 114 ----VQKARASGAPID-------GV----VISAGIPSLEEAVELIEELGDDGFP--YVAF--------KPGTIEQIRSVI 168 (717)
T ss_pred ----HHHHHhcCCCcc-------eE----EEecCCCcHHHHHHHHHHHhhcCce--eEEe--------cCCcHHHHHHHH
Confidence 567777676661 11 1222333455556777777555554 7654 455555554444
Q ss_pred ---hcCCCCCeEEEEcCCCCCc--------hHHHHHHHHHHHHh
Q 000835 222 ---SQTDLNTEVIFNCQMGRGR--------TTTGMVIATLVYLN 254 (1263)
Q Consensus 222 ---~~~p~~~~l~FhCq~G~GR--------TTt~Mvm~~Li~~~ 254 (1263)
+.. ++.+++.|-..|++= -+.-+.+|.=||.+
T Consensus 169 ~IAka~-P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~ 211 (717)
T COG4981 169 RIAKAN-PTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSR 211 (717)
T ss_pred HHHhcC-CCCceEEEEecCccCCccchhhcccHHHHHHHHHhcC
Confidence 444 688999999999853 34555666666654
No 103
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=23.53 E-value=6.1e+02 Score=29.60 Aligned_cols=105 Identities=12% Similarity=-0.040 Sum_probs=55.9
Q ss_pred ccccCCCCHHHH-HHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEe
Q 000835 123 NLEYTGINRARV-EQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 201 (1263)
Q Consensus 123 N~~~~Gis~~~v-e~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~Ri 201 (1263)
+..|.|++.+++ +.++ ++++.+++.|..+.++-...-+.... ...+..-..++++.+..- +++-.+|
T Consensus 107 ~~~n~~~~~~e~l~~~~-----~~v~~ak~~g~~v~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--G~d~i~l 174 (287)
T PRK05692 107 SQKNINCSIAESLERFE-----PVAEAAKQAGVRVRGYVSCVLGCPYE-----GEVPPEAVADVAERLFAL--GCYEISL 174 (287)
T ss_pred HHHHhCCCHHHHHHHHH-----HHHHHHHHcCCEEEEEEEEEecCCCC-----CCCCHHHHHHHHHHHHHc--CCcEEEe
Confidence 344588888774 4443 34567888887764332211110000 001122233344444333 4456666
Q ss_pred ecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCCCc
Q 000835 202 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGR 240 (1263)
Q Consensus 202 Pitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GR 240 (1263)
+-|-... .|.++-.++..+++.-++..|.|||+.-.|-
T Consensus 175 ~DT~G~~-~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 175 GDTIGVG-TPGQVRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred ccccCcc-CHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 6666554 6778888888887543445677777765543
No 104
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=22.85 E-value=75 Score=33.00 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 229 EVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 229 ~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
..+++|..|.|.||++..++..+..
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~ 26 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQ 26 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 3589999999999999999988875
No 105
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=22.40 E-value=1.2e+02 Score=28.93 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.6
Q ss_pred CCCCCeEEEEcCCCCCchHHHH
Q 000835 224 TDLNTEVIFNCQMGRGRTTTGM 245 (1263)
Q Consensus 224 ~p~~~~l~FhCq~G~GRTTt~M 245 (1263)
.+++..++|+|+.| +|+..+.
T Consensus 58 ~~~~~~ivvyC~~G-~rs~~a~ 78 (101)
T cd01518 58 LLKGKKVLMYCTGG-IRCEKAS 78 (101)
T ss_pred hcCCCEEEEECCCc-hhHHHHH
Confidence 47888999999988 6776553
No 106
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.98 E-value=1.3e+03 Score=29.13 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=59.8
Q ss_pred cCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEeecCC
Q 000835 126 YTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTD 205 (1263)
Q Consensus 126 ~~Gis~~~ve~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~RiPitd 205 (1263)
+.|+|.+++.++ -.+.++.++..|..+.+.-|+ +.. .+..-..++++.....| .+..+||-|-
T Consensus 110 ~l~~s~~e~l~~----~~~~v~~ak~~g~~v~f~~ed--~~r---------~d~~~l~~~~~~~~~~G--a~~i~l~DTv 172 (513)
T PRK00915 110 KLKMSREEVLEM----AVEAVKYARSYTDDVEFSAED--ATR---------TDLDFLCRVVEAAIDAG--ATTINIPDTV 172 (513)
T ss_pred HhCCCHHHHHHH----HHHHHHHHHHCCCeEEEEeCC--CCC---------CCHHHHHHHHHHHHHcC--CCEEEEccCC
Confidence 477888776432 234467888888777655542 211 12223344555544334 4588999888
Q ss_pred CCCCCccchHHHHHHhhc-CC--CCCeEEEEcCCCCCc
Q 000835 206 EKSPKEQDFDILVDKISQ-TD--LNTEVIFNCQMGRGR 240 (1263)
Q Consensus 206 ~~~P~~~~iD~fi~~v~~-~p--~~~~l~FhCq~G~GR 240 (1263)
... .|.++-.++..+++ +| ++..|-|||+.-.|=
T Consensus 173 G~~-~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~Gl 209 (513)
T PRK00915 173 GYT-TPEEFGELIKTLRERVPNIDKAIISVHCHNDLGL 209 (513)
T ss_pred CCC-CHHHHHHHHHHHHHhCCCcccceEEEEecCCCCH
Confidence 876 57777778887765 44 237788888876653
No 107
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=21.46 E-value=71 Score=34.85 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000835 226 LNTEVIFNCQMGRGRTTTGMVIATLVYL 253 (1263)
Q Consensus 226 ~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 253 (1263)
+..-+|++|..|+|.||.||=++ +|.
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGla--lRA 45 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQA--LRI 45 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHH--HHH
Confidence 66789999999999999987665 554
No 108
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.83 E-value=2.3e+02 Score=26.87 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=29.2
Q ss_pred CccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHH----HHHHHhcCCCCeEEEecCCCCCcch
Q 000835 597 SVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDML----AVNIASASKDTAFVFNCQMGRGRTT 661 (1263)
Q Consensus 597 ~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~f----i~~v~~~~~~~~l~FhCq~G~GRTT 661 (1263)
||.++.|.-..+.+ | -.-||+.+ -++.+ -+.....+++..++|+|..| +|+.
T Consensus 20 DvR~~~e~~~ghi~---g--a~~ip~~~-------~~~~~~~~~~~~~~~~~~~~~ivv~C~~G-~rs~ 75 (100)
T cd01523 20 DVRNESDYERWKID---G--ENNTPYFD-------PYFDFLEIEEDILDQLPDDQEVTVICAKE-GSSQ 75 (100)
T ss_pred EeCCHHHHhhcccC---C--Cccccccc-------chHHHHHhhHHHHhhCCCCCeEEEEcCCC-CcHH
Confidence 66788886555433 1 12244433 22222 12344457888999999988 3543
No 109
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=20.52 E-value=91 Score=30.48 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHHHHh
Q 000835 230 VIFNCQMGRGRTTTGMVIATLVYLN 254 (1263)
Q Consensus 230 l~FhCq~G~GRTTt~Mvm~~Li~~~ 254 (1263)
.+.+|+.|.|.||+++.++.-+...
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~ 27 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKE 27 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhc
Confidence 4689999999999999999888864
No 110
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=20.50 E-value=3.1e+02 Score=31.57 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=56.0
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEe
Q 000835 122 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 201 (1263)
Q Consensus 122 ~N~~~~Gis~~~ve~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~Ri 201 (1263)
.|..+.|.+.++..+ .-.++++.++..|-.+.+.-++.-+. +.....++++.....|. +-.+|
T Consensus 98 ~~~~~~~~~~~e~~~----~~~~~i~~a~~~G~~v~~~~eda~r~-----------~~~~l~~~~~~~~~~g~--~~i~l 160 (262)
T cd07948 98 LREASHGKSITEIIE----SAVEVIEFVKSKGIEVRFSSEDSFRS-----------DLVDLLRVYRAVDKLGV--NRVGI 160 (262)
T ss_pred HHHHHhCCCHHHHHH----HHHHHHHHHHHCCCeEEEEEEeeCCC-----------CHHHHHHHHHHHHHcCC--CEEEE
Confidence 344457778766422 12344677777777777766542221 12234566666544343 34555
Q ss_pred ecCCCCCCCccchHHHHHHhhcCCCCCeEEEEcCCCC
Q 000835 202 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGR 238 (1263)
Q Consensus 202 Pitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~ 238 (1263)
+-|-. .-.|.++..++..+++..+ ..|.|||+.-.
T Consensus 161 ~Dt~G-~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~ 195 (262)
T cd07948 161 ADTVG-IATPRQVYELVRTLRGVVS-CDIEFHGHNDT 195 (262)
T ss_pred CCcCC-CCCHHHHHHHHHHHHHhcC-CeEEEEECCCC
Confidence 55554 4568899999999987533 55555555443
No 111
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.25 E-value=5.4e+02 Score=29.29 Aligned_cols=99 Identities=20% Similarity=0.091 Sum_probs=52.1
Q ss_pred ccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccChHHHHHHhhhcCccceEEEeecC
Q 000835 125 EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVT 204 (1263)
Q Consensus 125 ~~~Gis~~~ve~~E~rlk~dvl~ea~~~gg~i~v~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~l~Y~RiPit 204 (1263)
.+.|.|.+++.. .+ .+.++.+++.|-.+.+.-+.. + ..+..-..++++.... ++++...|+-|
T Consensus 99 ~~~~~~~~~~~~---~~-~~~i~~a~~~G~~v~~~~~~~-~----------~~~~~~~~~~~~~~~~--~G~~~i~l~DT 161 (259)
T cd07939 99 HKLGKDRAWVLD---QL-RRLVGRAKDRGLFVSVGAEDA-S----------RADPDFLIEFAEVAQE--AGADRLRFADT 161 (259)
T ss_pred HHhCCCHHHHHH---HH-HHHHHHHHHCCCeEEEeeccC-C----------CCCHHHHHHHHHHHHH--CCCCEEEeCCC
Confidence 457788776531 11 234567777776665443211 1 0111222333343333 34446666666
Q ss_pred CCCCCCccchHHHHHHhhc-CCCCCeEEEEcCCCCCch
Q 000835 205 DEKSPKEQDFDILVDKISQ-TDLNTEVIFNCQMGRGRT 241 (1263)
Q Consensus 205 d~~~P~~~~iD~fi~~v~~-~p~~~~l~FhCq~G~GRT 241 (1263)
-.. -.|+++-.++..+++ .|-.-.+|+|+-.|.+=.
T Consensus 162 ~G~-~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~A 198 (259)
T cd07939 162 VGI-LDPFTTYELIRRLRAATDLPLEFHAHNDLGLATA 198 (259)
T ss_pred CCC-CCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH
Confidence 654 567788888887764 453445555555555433
No 112
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.20 E-value=4.3e+02 Score=29.56 Aligned_cols=55 Identities=15% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000835 613 FPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLR 673 (1263)
Q Consensus 613 ~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~FhCq~G~GRTTt~Mvi~~Li~~~ 673 (1263)
.|.+..+++-|.. ...|+++..+++.+++..++..+.||||.-.| |.++..+.-+
T Consensus 158 ~g~~~i~l~Dt~G-~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g-----la~an~laA~ 212 (265)
T cd03174 158 AGADEISLKDTVG-LATPEEVAELVKALREALPDVPLGLHTHNTLG-----LAVANSLAAL 212 (265)
T ss_pred cCCCEEEechhcC-CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC-----hHHHHHHHHH
Confidence 4788888888864 69999999999999988766888888887654 5555444333
Done!