BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000836
(1262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 48/263 (18%)
Query: 970 LPPSTIYNWSCGHFSKPLLTA-ADDTEEILARREEREKFALEHIAKCQRSSVSKLNNP-- 1026
L T Y GH S+ A + D +IL+ ERE + +C+ SS K N+
Sbjct: 105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW 164
Query: 1027 IACWDTRFEKGTKTA-LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK 1085
++C R+ K+A +QPF+P + + R+K+WN + +F H+
Sbjct: 165 VSC--VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHE-------- 213
Query: 1086 LCLVNELDVS----LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ------------- 1128
VN L +S + + + IW + Q+ A S+I
Sbjct: 214 -SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV 272
Query: 1129 GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188
G GV+ N++ + V +I + K + P + + +AL
Sbjct: 273 GTDQGVKIFNLMTQ---------SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL--- 320
Query: 1189 QVHGGQLAAGFVDGSVRLYDVRT 1211
G +L AGF DG +R + T
Sbjct: 321 ---GKKLFAGFTDGVIRTFSFET 340
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC
Length = 431
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186
+Q +PG S+V W ++ YL + + LWD+++++++ N +S + +L+
Sbjct: 152 LQMEQPGEYISSVA--WIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLS 207
Query: 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236
+ L++G G + +DVR + V + H+Q+ V G+ + P
Sbjct: 208 WNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---VCGLRWAP 251
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186
+Q +PG S+V W ++ YL + + LWD+++++++ N +S + +L+
Sbjct: 141 LQMEQPGEYISSVA--WIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLS 196
Query: 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236
+ L++G G + +DVR + V + H+Q+ V G+ + P
Sbjct: 197 WNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---VCGLRWAP 240
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186
+Q +PG S+V W ++ YL + + LWD+++++++ N +S + +L+
Sbjct: 61 LQMEQPGEYISSVA--WIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLS 116
Query: 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236
+ L++G G + +DVR + V + H+Q+ V G+ + P
Sbjct: 117 WNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---VCGLRWAP 160
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
Length = 357
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVD--WQQQSGYLYASGEVSSIM 1160
G+I ++KD + + L TA GV+ V D W + G L AS + ++
Sbjct: 69 GGSIWVFKDPEGAPNESLCTA---------GVQTEAGVTDVAWVSEKGILVAS-DSGAVE 118
Query: 1161 LWD-LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219
LW+ LEKE +VN I + G Q +G D SV+++D+ +L S
Sbjct: 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK-SY 177
Query: 1220 RPHTQQVERVVGISFQPGLD 1239
H+ +V V PG D
Sbjct: 178 NAHSSEVNCVAAC---PGKD 194
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 17/180 (9%)
Query: 1049 IVVAADENERIKIWNY--EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106
I+VA+D +++W +E L+N F ++ D + L + + D + + + ++
Sbjct: 108 ILVASDSGA-VELWEILEKESLLVNKFAKYEHDDI-VKTLSVFS--DGTQAVSGGKDFSV 163
Query: 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK 1166
++W D QK S H V C V + + GE I+LWD K
Sbjct: 164 KVW-DLSQK------AVLKSYNAHSSEVNC---VAACPGKDTIFLSCGEDGRILLWDTRK 213
Query: 1167 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226
+ +SD +++T A G G+V L +++ PD S H+Q +
Sbjct: 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNI 272
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 75/253 (29%)
Query: 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1101
+ P ++V+A E+ IK+W+YE + H + IS D S L+AS
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS-------FDHSGKLLAS 167
Query: 1102 CNGN--IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVD---------------WQ 1144
C+ + I++W D Q ++ GH V +++ + W+
Sbjct: 168 CSADMTIKLW------DFQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 1145 QQSGY----------------------LYAS-GEVSSIMLW---------DLEKEQQMVN 1172
Q+GY L AS ++ +W +L + + +V
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 1173 PI---PSSSDCSISALTASQVH-----GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ 1224
I P SS SIS T S+ G L +G D +++++DV T M + + H
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDN 339
Query: 1225 QVERVVGISFQPG 1237
V G+ F G
Sbjct: 340 WVR---GVLFHSG 349
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 25/195 (12%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNH-------DFPDKGISKLCLVNELDVSLL 1097
P +V+A ++ R+ +WN ++ H F G S C + S+
Sbjct: 76 PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157
++S Q D+ + + GHK V D Q++ + SG+ +
Sbjct: 136 NLSS------------QADRDGNMPVSRVLTGHKGYASSCQYVPD--QETRLITGSGDQT 181
Query: 1158 SIMLWDLEKEQQMV---NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM 1214
+ LWD+ Q++ + PS + +L+ + ++ +G D +VRL+D+R
Sbjct: 182 CV-LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 1215 LVCSTRPHTQQVERV 1229
V + H + V
Sbjct: 241 AVRTYHGHEGDINSV 255
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 41 LAASSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 89
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 90 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 141
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 89
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 90 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 141
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 89
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 90 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 141
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 55 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 103
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 104 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 155
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 37 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 85
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 86 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 137
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 86
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 87 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 138
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 34 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 82
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 83 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 134
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 43 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 91
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 92 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 143
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 92
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 93 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 144
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 92
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 93 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 144
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 92
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 93 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 144
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 39 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 87
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 88 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 139
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 86
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 87 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 138
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.50, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 89
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 90 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 141
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.50, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 89
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 90 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 141
>pdb|3SP6|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 285
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHR-----RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 192 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 250
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 251 RQLVTEHAQLVQIIKKTESDAALHPLLQE 279
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHR-----RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 194 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 252
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 253 RQLVTEHAQLVQIIKKTESDAALHPLLQE 281
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 33.9 bits (76), Expect = 0.63, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 108
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 109 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 160
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 33.9 bits (76), Expect = 0.63, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L +S + I+IW YD K ++ +I GHK G+ S+V W S L ++ +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEK-------TISGHKLGI--SDVA--WSSDSNLLVSASDD 110
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
++ +WD+ + + + S+ Q + +G D SVR++DV+T
Sbjct: 111 KTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKT 162
>pdb|3ET1|A Chain A, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET1|B Chain B, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 291
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHR-----RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 198 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 256
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 257 RQLVTEHAQLVQIIKKTESDAALHPLLQE 285
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide
Length = 288
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 195 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 253
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 254 RQLVTEHAQLVQIIKKTESDAALHPLLQE 282
>pdb|3G8I|A Chain A, Aleglitazar, A New, Potent, And Balanced Ppar AlphaGAMMA
Agonist For The Treatment Of Type Ii Diabetes
Length = 270
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 177 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 235
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 236 RQLVTEHAQLVQIIKKTESDAALHPLLQE 264
>pdb|2ZNN|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3VI8|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Aphm13
Length = 273
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 180 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 238
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 239 RQLVTEHAQLVQIIKKTESDAALHPLLQE 267
>pdb|2REW|A Chain A, Crystal Structure Of Pparalpha Ligand Binding Domain With
Bms-631707
pdb|3KDT|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDT|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDU|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
pdb|3KDU|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
Length = 277
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 184 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 242
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 243 RQLVTEHAQLVQIIKKTESDAALHPLLQE 271
>pdb|2NPA|A Chain A, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
pdb|2NPA|C Chain C, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
Length = 270
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 177 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 235
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 236 RQLVTEHAQLVQIIKKTESDAALHPLLQE 264
>pdb|2P54|A Chain A, A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide
And Gw735
pdb|3FEI|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
Length = 267
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 174 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 232
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 233 RQLVTEHAQLVQIIKKTESDAALHPLLQE 261
>pdb|1KKQ|A Chain A, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|B Chain B, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|C Chain C, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|D Chain D, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
Length = 269
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 564 MAAFVLAVIVDGHRRG-----QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
++ FV A+I G R G ++ G++HV HLQ + P+D P LQ + L
Sbjct: 176 ISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMA-DL 234
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSE 647
+L + + I ++ ++ A PLL E
Sbjct: 235 RQLVTEHAQLVQIIKKTESDAALHPLLQE 263
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 1050 VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109
V++A + I++W T +++F+ + P G++ + L D L +++ N +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1169
Y K V I GH GV I + ++ ++Q
Sbjct: 256 GTY-----GKYV-----IAGHVSGV------------------------ITVHNVFSKEQ 281
Query: 1170 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213
+ +PS CS ++LT + + AG+ +G + +D+R+P+
Sbjct: 282 TI-QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg
Particle Of The Proteasome
Length = 417
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 35/164 (21%)
Query: 1050 VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109
V++A + I++W T +++F+ + P G++ + L D L +++ N +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1169
Y + I GH GV + V KEQ
Sbjct: 253 GTYGKY----------VIAGHVSGVITVHNV-----------------------FSKEQT 279
Query: 1170 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213
+ +PS CS ++LT + + AG+ +G + +D+R+P+
Sbjct: 280 I--QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 321
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 1044 QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103
P ++ + + RI+IW E D+ + + + + K+ + L AS +
Sbjct: 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW--SPCGNYLASASFD 82
Query: 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW- 1162
IWK +Q D + + T ++GH+ V+ V W L S+ +W
Sbjct: 83 ATTCIWKK-NQDDFECVTT----LEGHENEVK----SVAWAPSGNLLATCSRDKSVWVWE 133
Query: 1163 -DLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1220
D E E + V+ + S + D SQ LA+ D +V+LY D + C+T
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQE---LLASASYDDTVKLYREEEDDWVCCATL 190
Query: 1221 PHTQQVERVVGISFQP 1236
+ V ++F P
Sbjct: 191 EGHEST--VWSLAFDP 204
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
+L AS +G +W D + Q L S GH V C ++ ++G + SG
Sbjct: 169 ILTASGDGTCALW---DVESGQLL----QSFHGHGADVLCLDLA---PSETGNTFVSGGC 218
Query: 1157 -SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210
M+WD+ Q + SD + S G A+G D + RLYD+R
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS---GDAFASGSDDATCRLYDLR 270
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 376 FRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLP 423
FRN L ER + + + I P++ HQ+ WD W EI S+ P
Sbjct: 93 FRNTALTERYLTTTSADYIG-PIV--EHQYLQWDNWPRLGEILRSEKP 137
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1154
SLL S + + IW + D+ + + I+GH+ V+ V W YL
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG----VAWSNDGYYLATCS 126
Query: 1155 EVSSIMLWDLEK 1166
S+ +W+ ++
Sbjct: 127 RDKSVWIWETDE 138
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 1086 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ 1145
LC D S + S + ++IW KLV + H V C + +
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIW----DSATGKLVHTYDE---HSEQVNCCHFT---NK 710
Query: 1146 QSGYLYASGEVSSIM-LWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1201
+ L A+G + LWDL +++ M S + C S LA+ D
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP------DDELLASCSAD 764
Query: 1202 GSVRLYDVRTPD 1213
G++RL+DVR+ +
Sbjct: 765 GTLRLWDVRSAN 776
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 1086 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ 1145
LC D S + S + ++IW KLV + H V C + +
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIW----DSATGKLVHTYDE---HSEQVNCCHFT---NK 717
Query: 1146 QSGYLYASGEVSSIM-LWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1201
+ L A+G + LWDL +++ M S + C S LA+ D
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP------DDELLASCSAD 771
Query: 1202 GSVRLYDVRTPD 1213
G++RL+DVR+ +
Sbjct: 772 GTLRLWDVRSAN 783
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 1050 VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109
VV+ + +K+W+ E +T L++ H + + D ++ S + +IR+W
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGH-------TNRVYSLQFDGIHVVSGSLDTSIRVW 304
Query: 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1169
D + + ++ GH+ ++ + + L + S++ +WD++ Q
Sbjct: 305 -DVETGN------CIHTLTGHQ------SLTSGMELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 1170 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML 1215
+ + SA+T Q + + DG+V+L+D++T + +
Sbjct: 352 L--QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,479,465
Number of Sequences: 62578
Number of extensions: 1542855
Number of successful extensions: 3459
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 3399
Number of HSP's gapped (non-prelim): 100
length of query: 1262
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1152
effective length of database: 8,089,757
effective search space: 9319400064
effective search space used: 9319400064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)