Query 000836
Match_columns 1262
No_of_seqs 633 out of 3231
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 21:17:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000836.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_22-26//hhsearch_pdb/000836hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 1.0 1 1 218.4 29.2 203 1033-1258 125-331 (344)
2 1vyh_C Platelet-activating fac 1.0 1 1 216.4 28.8 200 1033-1257 190-410 (410)
3 1vyh_C Platelet-activating fac 1.0 1 1 215.3 28.3 201 1033-1258 148-369 (410)
4 3iz6_a 40S ribosomal protein R 1.0 1 1 210.9 24.2 209 1032-1258 154-375 (380)
5 1got_B GT-beta; complex (GTP-b 1.0 1 1 209.7 31.2 198 1033-1255 141-340 (340)
6 4e54_B DNA damage-binding prot 1.0 1 1 209.0 24.8 206 1033-1258 117-327 (435)
7 3fm0_A Protein CIAO1; WDR39,SG 1.0 1 1 208.5 27.7 209 1033-1258 103-335 (345)
8 3ow8_A WD repeat-containing pr 1.0 1 1 208.4 28.6 200 1034-1258 121-321 (321)
9 4gqb_B Methylosome protein 50; 1.0 1 1 207.9 26.7 202 1033-1258 80-289 (344)
10 4g56_B MGC81050 protein; prote 1.0 1 1 206.7 28.0 204 1032-1258 136-343 (357)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=218.35 Aligned_cols=203 Identities=16% Similarity=0.181 Sum_probs=169.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCC-CEEEEEECCCEEEEEEC
Q ss_conf 88998289999379999999968993999988999288894079999998589998541899-68999937982999986
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg-~lLvTgS~DG~IrIWD~ 1111 (1262)
.|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|. ..|+++.|+ +++ .++++|+.||.|++||.
T Consensus 125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~---~~V~~~~~~--~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA---AQVTCVAAS--PHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSCTTEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC---CCEEEEEEC--CCCCCCEEEECCCCCCCCCCC
T ss_conf 789978999998998999999498939999999996999975768---855788865--899974011034435510234
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC
Q ss_conf 7878852277400102478995001420488707999-899996898099996888851357644999998269998749
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~-~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~ 1190 (1262)
+. ++.... .....+...+.+ +.|++.++ .+++++.|+.|++||+++++ ++.++.+|... |+++ .+++
T Consensus 200 ~~--~~~~~~---~~~~~~~~~~~~----~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~~~-v~~v-~fsp 267 (344)
T 4gqb_B 200 RC--PKPASQ---IGCSAPGYLPTS----LAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHSQC-VTGL-VFSP 267 (344)
T ss_dssp TS--SSCEEE---CC----CCCEEE----EEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC-EEEE-EECS
T ss_pred CC--CCEEEE---EECCEEECCCEE----EEECCCCCCCEEEECCCCCEEEEECCCCC-EEEEECCCCCC-EEEE-EECC
T ss_conf 45--520011---101000012123----56617999605886158718989899995-98998378899-8899-9926
Q ss_pred CC-CEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 99-999999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1191 HG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1191 ~g-~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
++ .+|++|+.||.|++||.++++ +. ...+|.+.|++++|+|+ +..+|++++.| .+++|++..
T Consensus 268 ~g~~~lasgs~D~~i~vwd~~~~~-~~----~~~~H~~~V~~v~~sp~-~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 268 HSVPFLASLSEDCSLAVLDSSLSE-LF----RSQAHRDFVRDATWSPL-NHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp SSSCCEEEEETTSCEEEECTTCCE-EE----EECCCSSCEEEEEECSS-STTEEEEEETTSCEEEEECCC
T ss_pred CCCEEEEEEECCCEEEEEECCCCC-EE----EECCCCCCEEEEEEECC-CCEEEEEECCCCEEEEEECCC
T ss_conf 999099999389949999999996-99----97288997789999179-996999993799599998999
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=216.41 Aligned_cols=200 Identities=15% Similarity=0.296 Sum_probs=176.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 88998289999379999999968993999988999288894079999998589998541899689999379829999867
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~ 1112 (1262)
.|...|.++.|+|++.++++|+.|+.|++||+.++.++..+.+|. ..|.++.|+ +++.++++|+.||.|++||..
T Consensus 190 ~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~~--~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR---EWVRMVRPN--QDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS---SCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEEC--CCCCEEEEECCCCEEEEEECC
T ss_conf 899977899996799999999689969999899994899992788---628999998--999999999189909999898
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCC--------------------CCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 8788522774001024789950014204887079--------------------99899996898099996888851357
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--------------------SGYLYASGEVSSIMLWDLEKEQQMVN 1172 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~--------------------~~~Llssg~Dg~IrIWDlrs~~~~i~ 1172 (1262)
. +... ..+.+|...+.+ +.|+++ +..+++++.|+.|++||++++. ++.
T Consensus 265 ~--~~~~-----~~~~~h~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~ 332 (410)
T 1vyh_C 265 T--KECK-----AELREHRHVVEC----ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLM 332 (410)
T ss_dssp T--CCEE-----EEECCCSSCEEE----EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEE
T ss_pred C--CCEE-----EEECCCCCEEEE----EEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC-EEE
T ss_conf 9--7436-----673378745899----998586554310121255555667888899999389849999889996-699
Q ss_pred EECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CE
Q ss_conf 64499999826999874999999999789919999788998102320578878889399999429999899994399-55
Q 000836 1173 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LP 1251 (1262)
Q Consensus 1173 ti~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I 1251 (1262)
.+.+|... |+++ .+++++.++++|+.||.|++||.+.++ ....+ .+|...|++++|+|+ +..|++|+.| .+
T Consensus 333 ~~~~h~~~-v~~v-~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~~---~~h~~~v~~l~~~~~--~~~l~sgs~D~~i 404 (410)
T 1vyh_C 333 TLVGHDNW-VRGV-LFHSGGKFILSCADDKTLRVWDYKNKR-CMKTL---NAHEHFVTSLDFHKT--APYVVTGSVDQTV 404 (410)
T ss_dssp EEECCSSC-EEEE-EECSSSSCEEEEETTTEEEEECCTTSC-CCEEE---ECCSSCEEEEEECSS--SSCEEEEETTSEE
T ss_pred EEECCCCC-EEEE-EECCCCCEEEEEECCCEEEEEECCCCC-EEEEE---CCCCCCEEEEEECCC--CCEEEEEECCCCE
T ss_conf 99778885-8999-994998999999597929999899990-68998---477786899998289--9999999279948
Q ss_pred EEEECC
Q ss_conf 998443
Q 000836 1252 SFSDLI 1257 (1262)
Q Consensus 1252 ~iWDLr 1257 (1262)
++|++|
T Consensus 405 ~vW~~r 410 (410)
T 1vyh_C 405 KVWECR 410 (410)
T ss_dssp EEEC--
T ss_pred EEEECC
T ss_conf 997379
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=215.28 Aligned_cols=201 Identities=14% Similarity=0.270 Sum_probs=176.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 88998289999379999999968993999988999288894079999998589998541899689999379829999867
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~ 1112 (1262)
.|...|.+++|+|++.++++|+.|+.|++||+.+++++..+.+|. ..|+++.|+ +++.++++|+.||+|++||..
T Consensus 148 ~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~---~~V~~v~~~--p~~~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD---HNVSSVSIM--PNGDHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS---SCEEEEEEC--SSSSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC---CCEEEEEEE--CCCCEEEEEECCCEEEEEECC
T ss_conf 667868789985999999999189819999589982669982899---977899996--799999999689969999899
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC-
Q ss_conf 8788522774001024789950014204887079998999968980999968888513576449999982699987499-
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH- 1191 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~- 1191 (1262)
. +.. ...+.+|...+.. +.|++++..+++++.|+.|++||++++. +...+..|... |.++ .++++
T Consensus 223 ~--~~~-----~~~~~~h~~~v~~----~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~-v~~~-~~~~~~ 288 (410)
T 1vyh_C 223 T--GYC-----VKTFTGHREWVRM----VRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHV-VECI-SWAPES 288 (410)
T ss_dssp T--CCE-----EEEEECCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSC-EEEE-EECCSC
T ss_pred C--CCE-----EEEEECCCCCEEE----EEECCCCCEEEEECCCCEEEEEECCCCC-EEEEECCCCCE-EEEE-EECCCC
T ss_conf 9--948-----9999278862899----9998999999999189909999898974-36673378745-8999-985865
Q ss_pred -------------------CCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CE
Q ss_conf -------------------9999999789919999788998102320578878889399999429999899994399-55
Q 000836 1192 -------------------GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LP 1251 (1262)
Q Consensus 1192 -------------------g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I 1251 (1262)
+.++++|+.||.|++||++++. +... +.+|..+|.++.|+|+ +.+|++|+.| .+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~---~~~h~~~v~~v~~~~~--g~~l~s~s~D~~i 362 (410)
T 1vyh_C 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMT---LVGHDNWVRGVLFHSG--GKFILSCADDKTL 362 (410)
T ss_dssp GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEE---EECCSSCEEEEEECSS--SSCEEEEETTTEE
T ss_pred CCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC-EEEE---EECCCCCEEEEEECCC--CCEEEEEECCCEE
T ss_conf 54310121255555667888899999389849999889996-6999---9778885899999499--8999999597929
Q ss_pred EEEECCC
Q ss_conf 9984431
Q 000836 1252 SFSDLIY 1258 (1262)
Q Consensus 1252 ~iWDLry 1258 (1262)
++||+..
T Consensus 363 ~vwd~~~ 369 (410)
T 1vyh_C 363 RVWDYKN 369 (410)
T ss_dssp EEECCTT
T ss_pred EEEECCC
T ss_conf 9998999
No 4
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=210.91 Aligned_cols=209 Identities=12% Similarity=0.258 Sum_probs=173.8
Q ss_pred CCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCEEEEE-----ECCCCCCCCEEEEEEEECCCCCEEEEEECCCE
Q ss_conf 688998289999379-999999968993999988999288894-----07999999858999854189968999937982
Q 000836 1032 TRFEKGTKTALLQPF-SPIVVAADENERIKIWNYEEDTLLNSF-----DNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspd-g~~Lvsgs~dg~I~IWD~~tg~~l~~l-----~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~ 1105 (1262)
..|...+.++.|+|+ +..+++|+.|+.|++||+.+++.+..+ .+|. ..|.++.|. +.++.++++|+.||.
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~---~~v~~~~~~-~~~~~~l~sgs~D~~ 229 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT---ADVLSLSIN-SLNANMFISGSCDTT 229 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC---SCEEEEEEC-SSSCCEEEEEETTSC
T ss_pred CCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCC---CCEEEEEEE-CCCCCEEEEEECCCE
T ss_conf 6897546899996489978999779981999986779578996056678875---676999920-699998999978986
Q ss_pred EEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC------
Q ss_conf 99998678788522774001024789950014204887079998999968980999968888513576449999------
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD------ 1179 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~------ 1179 (1262)
|++||.+.. +.. .+.+.+|...|.+ +.|+|++..+++++.|+.|++||++++. ++..+..+..
T Consensus 230 v~~wd~~~~-~~~-----~~~~~~h~~~v~~----v~~~p~~~~l~s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~~~ 298 (380)
T 3iz6_a 230 VRLWDLRIT-SRA-----VRTYHGHEGDINS----VKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNEL 298 (380)
T ss_dssp EEEEETTTT-CCC-----CEEECCCSSCCCE----EEECTTSSEEEEECSSSCEEEEETTTTE-EEEEECCCCSSSCCSS
T ss_pred EEEEECCCC-CCC-----EEEECCCCCCEEE----EEEECCCCEEEEECCCCEEEEEECCCCC-EEEEECCCCCCCCCCC
T ss_conf 999978889-734-----6998874887579----9991699969998389969999888996-8898615655566556
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 9826999874999999999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1180 s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
..++++ .+++++.++++|+.||.|++||...++..........+|.+.|.+++|+|+ +..|++|+.| .+++|++.-
T Consensus 299 ~~v~~~-~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 299 PIVTSV-AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD--GSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSCSEE-EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS--SSEEEEECTTSCEEEEECCS
T ss_pred CCEEEE-EECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCC--CCEEEEEECCCCEEEEECCC
T ss_conf 863899-988999989999799979999887781578970236777784579998999--99899960899889995378
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=209.70 Aligned_cols=198 Identities=15% Similarity=0.261 Sum_probs=171.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 88998289999379999999968993999988999288894079999998589998541899689999379829999867
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~ 1112 (1262)
.|...+.++.|++++. +++++.|+.|++||+.+++.+..+.+|. +.|+++.|+ +++.++++|+.||.|++||.+
T Consensus 141 ~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~~--~~~~~l~sg~~d~~v~~wd~~ 214 (340)
T 1got_B 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT---GDVMSLSLA--PDTRLFVSGACDASAKLWDVR 214 (340)
T ss_dssp CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEECCCCC-EEEEECCCCEEEEECCCCCEEEEECCCC---CCEEEEEEC--CCCCEEEEEECCCCEEEEECC
T ss_conf 8776389999879996-9999899929999899991889976999---866899998--999999999389939997789
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEEECCC
Q ss_conf 8788522774001024789950014204887079998999968980999968888513576449999-982699987499
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD-CSISALTASQVH 1191 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~-s~ItsLs~~s~~ 1191 (1262)
. +.. + ..+.+|...|.+ ++|+|++..+++++.|+.|++||++..+ .+..+..+.. ..|+++ .++++
T Consensus 215 ~--~~~--~---~~~~~h~~~v~~----v~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~v~~~-~~s~~ 281 (340)
T 1got_B 215 E--GMC--R---QTFTGHESDINA----ICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSV-SFSKS 281 (340)
T ss_dssp T--CSE--E---EEECCCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCTTCCSCEEEE-EECTT
T ss_pred C--CEE--E---EEECCCCCCEEE----EEECCCCCEEEEECCCCCEEEEECCCCC-EEEEECCCCCCCCEEEE-EECCC
T ss_conf 9--816--7---897487687799----9994999989997489819999889991-89997268852416999-99899
Q ss_pred CCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEE
Q ss_conf 9999999789919999788998102320578878889399999429999899994399-559984
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1192 g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWD 1255 (1262)
+.++++|+.||.|++||.+..+ .... +.+|..+|.+++|+|+ +..|++|+.| .+++||
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~-~~~~---~~~h~~~v~~~~~s~d--g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKAD-RAGV---LAGHDNRVSCLGVTDD--GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCC-EEEE---EECCSSCEEEEEECTT--SSCEEEEETTSCEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCC-EEEE---EECCCCCEEEEEECCC--CCEEEEECCCCCEEECC
T ss_conf 9999997799909998841383-8658---5057784889998299--99899972886189559
No 6
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=1.00 E-value=1 Score=209.04 Aligned_cols=206 Identities=15% Similarity=0.166 Sum_probs=154.9
Q ss_pred CCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCE--EEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 8899828999937-999999996899399998899928--8894079999998589998541899689999379829999
Q 000836 1033 RFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fsp-dg~~Lvsgs~dg~I~IWD~~tg~~--l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIW 1109 (1262)
.|...|++++||| ++.+||+|+.||.|+|||+.++.. ...+.+|. +.|++++|+ +.++.+|++|+.||+|++|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~---~~V~~l~f~-p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG---GSITGLKFN-PLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS---CCCCEEEEC-SSCTTEEEEECSSSCEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCC---CCEEEEEEE-CCCCCEEEEEECCCEEEEE
T ss_conf 899989999991899999999918897999979899713689736899---988899990-7999999999589979996
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 86787885227740010247899500142048870799989999689809999688885135764499999826999874
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s 1189 (1262)
|+.. +..... .....+...+.+ +.|++++..+++++.|+.|++||++. + .+..+..|... |+++ .++
T Consensus 193 d~~~--~~~~~~---~~~~~~~~~~~~----~~~~~~~~~l~~g~~dg~i~~wd~~~-~-~~~~~~~h~~~-v~~v-~~~ 259 (435)
T 4e54_B 193 DFKG--NILRVF---ASSDTINIWFCS----LDVSASSRMVVTGDNVGNVILLNMDG-K-ELWNLRMHKKK-VTHV-ALN 259 (435)
T ss_dssp ETTS--CEEEEE---ECCSSCSCCCCC----EEEETTTTEEEEECSSSBEEEEESSS-C-BCCCSBCCSSC-EEEE-EEC
T ss_pred ECCC--CCEEEE---ECCCCCCCCEEE----EEECCCCCEEEEEECCCCEEEECCCC-C-EEEEEECCCCE-EEEE-EEC
T ss_conf 4567--722588---616777753799----99899999999995899676632675-0-56898413433-7753-333
Q ss_pred CCCC-EEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 9999-99999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1190 VHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1190 ~~g~-lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+++. ++++|+.||.|++||++...... .+....+|..+|++++|+|+ +.+|++++.| .+++||++.
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spd--g~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPD--GARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTT--SSEEEEEESSSCEEEEESSS
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCC-EEEEEEECCCCCCCEEECCC--CCEEEEECCCCEEEEEECCC
T ss_conf 7774499983376402588634466652-47874202465421338999--98248775999799998999
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=208.50 Aligned_cols=209 Identities=14% Similarity=0.290 Sum_probs=163.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC---CEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 88998289999379999999968993999988999---288894079999998589998541899689999379829999
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg---~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIW 1109 (1262)
.|...|.+++|+|++.+|++++.|+.|++||+.++ .++..+..|. ..|+++.|+ +++.+|++|+.||.|++|
T Consensus 103 ~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~---~~v~~~~~~--p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT---QDVKHVVWH--PSQELLASASYDDTVKLY 177 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC---SCEEEEEEC--SSSSCEEEEETTSCEEEE
T ss_pred CCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCC---CCEEEEEEC--CCCCEEEEEECCCCEEEE
T ss_conf 787882699992899999999899909998878999808999952767---886899999--999999999489809999
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCC--------------EEEEEEC
Q ss_conf 86787885227740010247899500142048870799989999689809999688885--------------1357644
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--------------QMVNPIP 1175 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~--------------~~i~ti~ 1175 (1262)
+... +..... ..+.+|...|.+ ++|++++..+++++.|+.|++||..... .++..+.
T Consensus 178 ~~~~--~~~~~~---~~~~~h~~~v~~----l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T 3fm0_A 178 REEE--DDWVCC---ATLEGHESTVWS----LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248 (345)
T ss_dssp EEET--TEEEEE---EEECCCSSCEEE----EEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred EECC--CCEEEE---EEECCCCCCEEE----EEECCCCCEEEEEECCCEEEEECCCCCCCCCCCEEECCCCCCCEEEEEC
T ss_conf 9369--977999---992577785679----9999999989998089929995153688876505633678633368814
Q ss_pred C-CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE---E--EEECCCCCCCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 9-999982699987499999999978991999978899810---2--320578878889399999429999899994399
Q 000836 1176 S-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML---V--CSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1176 ~-hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~---v--~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd 1249 (1262)
. |... |.++ .+++++..+++++.|+.|++|+....... . .....+.+|...|++++|+|+ +...|++|+.|
T Consensus 249 ~~h~~~-v~~v-~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~laS~s~D 325 (345)
T 3fm0_A 249 GFHSRT-IYDI-AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK-EPGLLASCSDD 325 (345)
T ss_dssp SSCSSC-EEEE-EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS-STTEEEEEETT
T ss_pred CCCCCC-EEEE-EEECCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECC-CCEEEEECCCC
T ss_conf 778884-7788-99157999999747981899992787886302589874004454686757478379-95599982799
Q ss_pred -CEEEEECCC
Q ss_conf -559984431
Q 000836 1250 -LPSFSDLIY 1258 (1262)
Q Consensus 1250 -~I~iWDLry 1258 (1262)
.+++|++..
T Consensus 326 g~v~~W~~~~ 335 (345)
T 3fm0_A 326 GEVAFWKYQR 335 (345)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEEEECC
T ss_conf 8199998448
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=208.43 Aligned_cols=200 Identities=17% Similarity=0.223 Sum_probs=177.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 89982899993799999999689939999889992888940799999985899985418996899993798299998678
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~ 1113 (1262)
+...+.+++|+|+++++++++.++.|++|++.+++....+..+. ..|++++|+ +++.+|++|+.||.|++||..+
T Consensus 121 ~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~---~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~ 195 (321)
T 3ow8_A 121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG---KFILSIAYS--PDGKYLASGAIDGIINIFDIAT 195 (321)
T ss_dssp CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS---SCEEEEEEC--TTSSEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCC---CEEEEEEEC--CCCCEEEEECCCCEEEEEECCC
T ss_conf 98567999999999989998389919999867994667743899---429999998--9999999992898399999999
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 78852277400102478995001420488707999899996898099996888851357644999998269998749999
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~ 1193 (1262)
++. + ..+.+|...+.+ ++|+|++..+++++.|+.|++||++... ++..+.+|... |+++ .+++++.
T Consensus 196 --~~~--~---~~~~~h~~~v~~----l~~spd~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~-v~~~-~~sp~~~ 261 (321)
T 3ow8_A 196 --GKL--L---HTLEGHAMPIRS----LTFSPDSQLLVTASDDGYIKIYDVQHAN-LAGTLSGHASW-VLNV-AFCPDDT 261 (321)
T ss_dssp --TEE--E---EEECCCSSCCCE----EEECTTSCEEEEECTTSCEEEEETTTCC-EEEEECCCSSC-EEEE-EECTTSS
T ss_pred --CCE--E---EEECCCCCCEEE----EEECCCCCEEEEECCCCEEEEEECCCCC-EEEEECCCCCC-EEEE-EECCCCC
T ss_conf --909--9---998025896018----9994899989999099809998789963-25898688882-6899-9979999
Q ss_pred EEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 99999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1194 lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+|++|+.||.|++||+++++ ++..+ .+|...|.+++|+|+ +..|++++.| .+++||..+
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~-~~~~~---~~h~~~v~~v~~s~~--g~~l~s~~~d~~i~vwd~p~ 321 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRT-CVHTF---FDHQDQVWGVKYNGN--GSKIVSVGDDQEIHIYDCPI 321 (321)
T ss_dssp EEEEEETTSCEEEEETTTTE-EEEEE---CCCSSCEEEEEECTT--SSEEEEEETTCCEEEEECC-
T ss_pred EEEEEECCCCEEEEECCCCE-EEEEE---CCCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCC
T ss_conf 89998189809999499988-88898---378773899999899--99999975898089995779
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=207.93 Aligned_cols=202 Identities=19% Similarity=0.262 Sum_probs=165.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE----EECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 8899828999937999999996899399998899928889----407999999858999854189968999937982999
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS----FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~----l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrI 1108 (1262)
.+...|.+++|++++ .+++|+.||.|+|||+.+++.+.. ..+|. ..|++++|+ +++.+|++|+.||+|++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~---~~V~~v~~s--pdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHD---DIVSTVSVL--SSGTQAVSGSKDICIKV 153 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCS---SCEEEEEEC--TTSSEEEEEETTSCEEE
T ss_pred CCCCCEEEEEEECCC-EEEEEECCCEEEEEECCCCCCEEEEECCCCCCC---CCEEEEEEC--CCCCEEEEEECCCEEEE
T ss_conf 367987899992998-299998979899996538874358601346789---978999998--99899999949893999
Q ss_pred EECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCC-CCCEEEEE
Q ss_conf 9867878852277400102478995001420488707999-899996898099996888851357644999-99826999
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISALT 1186 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~-~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs-~s~ItsLs 1186 (1262)
||..+ ++. + +.+.+|...|.+ +.|++++. .+++++.|+.|++||+++++ ++..+..+. ...++++
T Consensus 154 wd~~~--~~~--~---~~~~~h~~~V~~----~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~- 220 (344)
T 4gqb_B 154 WDLAQ--QVV--L---SSYRAHAAQVTC----VAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGYLPTSL- 220 (344)
T ss_dssp EETTT--TEE--E---EEECCCSSCEEE----EEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CCCEEEE-
T ss_pred EECCC--CCE--E---EEECCCCCCEEE----EEECCCCCCCEEEECCCCCCCCCCCCCCC-EEEEEECCEEECCCEEE-
T ss_conf 99999--969--9---997576885578----88658999740110344355102344552-00111010000121235-
Q ss_pred EECC-CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 8749-99999999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1187 ASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1187 ~~s~-~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
.+++ ++.++++|+.||.|++||+++++ ++.. +.+|...|++++|+|+ +..+|++|+.| .+++||+..
T Consensus 221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~---~~~h~~~v~~v~fsp~-g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 221 AWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLS---SAVHSQCVTGLVFSPH-SVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp EECSSCTTEEEEEETTSEEEEEESCC---CCEE---EECCSSCEEEEEECSS-SSCCEEEEETTSCEEEECTTC
T ss_pred EECCCCCCCEEEECCCCCEEEEECCCCC-EEEE---ECCCCCCEEEEEECCC-CCEEEEEEECCCEEEEEECCC
T ss_conf 6617999605886158718989899995-9899---8378899889999269-990999993899499999999
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=206.68 Aligned_cols=204 Identities=16% Similarity=0.231 Sum_probs=170.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCC-CEEEEEECCCEEEEEE
Q ss_conf 688998289999379999999968993999988999288894079999998589998541899-6899993798299998
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg-~lLvTgS~DG~IrIWD 1110 (1262)
..|...|.+++|+|++.+|++++.++.|++||..+++.+..+..|. ..|++++|+ +++ .++++++.||.|++||
T Consensus 136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---~~v~~v~~s--~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---SEVNCVAAC--PGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--TTCSSCEEEEETTSCEEECC
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC---CCEEEEEEC--CCCCCEEEEECCCCCEEEEE
T ss_conf 7888988999997998999999698939999899995999982778---978899983--68872266550578638878
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 67878852277400102478995001420488707999-89999689809999688885135764499999826999874
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~-~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s 1189 (1262)
.+. ++.... .....+...+.+ +.|+|+++ .+++++.|+.|++||+++.+ ++..+..|... |+++ .++
T Consensus 211 ~~~--~~~~~~---~~~~~~~~~v~~----v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~-v~~l-~~s 278 (357)
T 4g56_B 211 TRK--PKPATR---IDFCASDTIPTS----VTWHPEKDDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQN-ITGL-AYS 278 (357)
T ss_dssp TTS--SSCBCB---CCCTTCCSCEEE----EEECTTSTTEEEEEESSSCEEEEESSCGG-GCEEECCCSSC-EEEE-EEC
T ss_pred CCC--CCEEEE---EEECCCCCCCCC----HHHHHCCCCEEEEEECCCCEEEEECCCCC-EEEEEECCCEE-EEEE-EEC
T ss_conf 899--964012---330023344421----11121353059982135420689899995-82899355313-8779-976
Q ss_pred CCC-CEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 999-999999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1190 VHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1190 ~~g-~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+++ .+|++|+.||.|+|||+++++ +.... +|...|++++|+|. ++..|++++.| .+++|++..
T Consensus 279 p~~~~~lasgs~D~~i~iwd~~~~~-~~~~~----~H~~~V~~vafsP~-d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 279 YHSSPFLASISEDCTVAVLDADFSE-VFRDL----SHRDFVTGVAWSPL-DHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSSSCCEEEEETTSCEEEECTTSCE-EEEEC----CCSSCEEEEEECSS-STTEEEEEETTSCEEEEECC-
T ss_pred CCCCCEEEEEECCCEEEEEECCCCC-EEEEC----CCCCCEEEEEEECC-CCCEEEEECCCCEEEEEECCC
T ss_conf 8999899999589979999899995-86978----89998899999589-999999991899599997799
Done!