BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000837
(1262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 280 NNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKD-- 337
N + ++EKD+ HDVV R + ES RK + +GL + +V ++Y + D
Sbjct: 57 NRILEIEKDTRHDVVAFT---RAVSESLGEERKWVHYGLTSTDVVDTALSYLLKQANDIL 113
Query: 338 FEDLLSFF-------TEMKCTPDVLAG-NRIIHTLCSIFGSKRADLFVQELEHSGFRPDE 389
+DL F E K T V+ G +H + FG K A L+ +E++ + R +
Sbjct: 114 LKDLERFVDIIKEKAKEHKYT--VMMGRTHGVHAEPTTFGLKLA-LWHEEMKRNLERFKQ 170
Query: 390 ITFGILIG 397
GI +G
Sbjct: 171 AKAGIEVG 178
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 831 SLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQ 883
+ E+P+ L ++ F + + E+ +L+RDML+ ML DE Y +LI+
Sbjct: 10 TFTEEPIRLIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARML--DERYTILIR 60
>pdb|3GKU|A Chain A, Crystal Structure Of A Probable Rna-binding Protein From
Clostridium Symbiosum Atcc 14940
pdb|3GKU|B Chain B, Crystal Structure Of A Probable Rna-binding Protein From
Clostridium Symbiosum Atcc 14940
pdb|3GKU|C Chain C, Crystal Structure Of A Probable Rna-binding Protein From
Clostridium Symbiosum Atcc 14940
Length = 225
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 482 VSEMAKSGLIELSSLEDPL--------SKGFMILGLNPSAVRLRRDNDMGFSKVEF---- 529
V E LIEL + D L S GF+ +G P+ +R +R + +EF
Sbjct: 14 VEEAVTKALIELQTTSDKLTYEIVEKGSAGFLGIGSKPAIIRAKRKETLQDKAIEFLEQV 73
Query: 530 FDNLGNGLYLDTDLDEYERK 549
FD + + + +E E++
Sbjct: 74 FDAXNXAVDISVEYNETEKE 93
>pdb|3K9T|A Chain A, Crystal Structure Of Putative Peptidase (np_348812.1) From
Clostridium Acetobutylicum At 2.37 A Resolution
Length = 435
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 857 EEASKLFRDMLSQGMLLEDEVYNML-----IQGHCEANNLRKVRELLSAMIRKRLSLSIS 911
EE +K ++ G E+YN++ I N +RK ++ IRK + L I
Sbjct: 3 EEINKYIQNSSETG----GEIYNLIEELFPICRSITGNGVRKTXDI----IRKHIPLEIH 54
Query: 912 SYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDEL 971
++ + + VP N+K+ + +K +I F H+ S H LDEL
Sbjct: 55 EVKSGTK--VFDWTVPKEWNIKDAYVRNSKGEKVIDFKENNLHVXSYSVPVHKTXTLDEL 112
Query: 972 Q 972
+
Sbjct: 113 K 113
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 367 IFGSKRADLFVQELEHSGF-RPDEITFGILIGWTC--REGNLRSALVFFSEILSRG-LNP 422
I G+ +++EL H DE I W +G+L F L RG LNP
Sbjct: 229 IIGTGTNACYMEELRHIDLVEGDEGRMCINTEWGAFGDDGSLEDIRTEFDRELDRGSLNP 288
Query: 423 DVHTYNSLISGMFKEGMSKHAKEILDEMVNRG------ITPSLST 461
+ ++SGM+ M + + IL +M G ITP L T
Sbjct: 289 GKQLFEKMVSGMY---MGELVRLILVKMAKEGLLFEGRITPELLT 330
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T05|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T07|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T07|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
With A Naturally Occurring Bis-Indole Alkaloid
pdb|3T0T|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase
pdb|3T0T|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase
Length = 606
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 745 LCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSV-AFKMLDSMLDKNMAP 803
+C G +S + ++E+L+ G N+ ++ +SH G +E K + + + LDK +A
Sbjct: 28 VCTIGPASESEEMIEKLINAGMNVARLNFSH---GSHEEHKGRIDTIRKVAKRLDKIVAI 84
Query: 804 CLD 806
LD
Sbjct: 85 LLD 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,895,994
Number of Sequences: 62578
Number of extensions: 1362595
Number of successful extensions: 3564
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3563
Number of HSP's gapped (non-prelim): 8
length of query: 1262
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1152
effective length of database: 8,089,757
effective search space: 9319400064
effective search space used: 9319400064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)