Query 000837
Match_columns 1262
No_of_seqs 690 out of 5024
Neff 10.5
Searched_HMMs 46136
Date Tue Apr 2 00:22:33 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.2E-78 2.6E-83 772.3 77.0 764 247-1218 49-837 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.8E-76 6E-81 750.7 73.9 683 351-1230 48-734 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5E-64 1.1E-68 619.3 65.8 543 212-876 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3.1E-63 6.6E-68 612.3 68.0 544 285-944 368-914 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-55 2.3E-60 548.2 54.2 473 248-837 86-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.3E-55 1.4E-59 541.3 54.7 561 595-1218 88-675 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.7E-47 1.9E-51 496.5 110.0 870 177-1214 21-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-46 4.7E-51 492.7 106.5 862 152-1112 33-898 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-24 3.4E-29 282.7 80.2 424 638-1112 277-738 (1157)
10 PRK11447 cellulose synthase su 100.0 1.9E-24 4.1E-29 282.0 78.0 679 178-1042 28-738 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.3E-21 2.9E-26 241.7 70.0 683 462-1236 45-757 (987)
12 PRK09782 bacteriophage N4 rece 99.9 6.2E-21 1.3E-25 235.8 72.4 680 401-1203 56-760 (987)
13 KOG2002 TPR-containing nuclear 99.9 1.1E-19 2.5E-24 207.3 61.1 573 611-1233 146-760 (1018)
14 KOG2002 TPR-containing nuclear 99.9 1.4E-18 2.9E-23 198.7 59.7 421 531-1011 346-800 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 9.5E-21 2.1E-25 203.9 36.9 446 773-1241 51-508 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 5.2E-20 1.1E-24 198.3 37.7 407 777-1203 89-506 (966)
17 KOG4318 Bicoid mRNA stability 99.9 3.9E-16 8.5E-21 176.1 58.5 954 173-1234 20-1064(1088)
18 PRK11788 tetratricopeptide rep 99.8 5.1E-18 1.1E-22 198.1 34.7 301 181-491 38-350 (389)
19 TIGR00990 3a0801s09 mitochondr 99.8 8.6E-16 1.9E-20 188.6 52.9 424 772-1216 129-571 (615)
20 KOG4318 Bicoid mRNA stability 99.8 1.7E-15 3.6E-20 171.1 49.5 552 375-1011 11-596 (1088)
21 PRK15174 Vi polysaccharide exp 99.8 7.1E-16 1.5E-20 188.0 47.8 359 154-559 18-384 (656)
22 PRK11788 tetratricopeptide rep 99.8 1.9E-17 4.2E-22 193.2 33.0 264 219-487 40-310 (389)
23 KOG2076 RNA polymerase III tra 99.8 4.2E-14 9E-19 161.6 56.3 625 568-1238 148-881 (895)
24 KOG2076 RNA polymerase III tra 99.8 2.2E-13 4.7E-18 155.8 61.0 361 184-585 145-552 (895)
25 TIGR00990 3a0801s09 mitochondr 99.8 4.2E-15 9.1E-20 182.5 50.5 91 181-275 130-220 (615)
26 PRK10049 pgaA outer membrane p 99.8 4E-15 8.6E-20 185.8 48.7 410 809-1232 19-470 (765)
27 KOG0495 HAT repeat protein [RN 99.8 7E-12 1.5E-16 137.5 63.1 615 540-1229 264-891 (913)
28 PRK10049 pgaA outer membrane p 99.8 1.2E-14 2.6E-19 181.5 48.4 190 921-1114 248-456 (765)
29 PRK15174 Vi polysaccharide exp 99.8 4.3E-15 9.2E-20 181.2 42.9 330 217-588 45-381 (656)
30 PRK14574 hmsH outer membrane p 99.8 6.5E-14 1.4E-18 170.3 52.0 435 781-1227 45-522 (822)
31 KOG0495 HAT repeat protein [RN 99.8 1.4E-11 2.9E-16 135.3 63.2 507 548-1114 367-880 (913)
32 KOG4422 Uncharacterized conser 99.8 2.8E-14 6.1E-19 148.2 39.8 254 334-621 191-459 (625)
33 PRK14574 hmsH outer membrane p 99.7 1.4E-13 2.9E-18 167.6 49.8 427 640-1114 44-513 (822)
34 KOG4422 Uncharacterized conser 99.7 1.4E-12 3.1E-17 135.7 40.1 357 839-1217 206-591 (625)
35 KOG0985 Vesicle coat protein c 99.6 6E-09 1.3E-13 119.8 64.1 857 220-1241 487-1372(1666)
36 KOG2003 TPR repeat-containing 99.6 7.4E-12 1.6E-16 130.9 37.7 494 669-1211 205-717 (840)
37 KOG0985 Vesicle coat protein c 99.6 3.2E-08 7E-13 114.0 68.5 848 202-1208 348-1241(1666)
38 KOG2003 TPR repeat-containing 99.6 1.1E-11 2.3E-16 129.7 36.2 466 772-1249 203-720 (840)
39 KOG3616 Selective LIM binding 99.6 9.2E-08 2E-12 106.5 67.9 164 530-723 768-931 (1636)
40 KOG1915 Cell cycle control pro 99.5 2.8E-09 6E-14 113.2 47.2 431 677-1159 85-547 (677)
41 KOG4162 Predicted calmodulin-b 99.5 1.7E-09 3.7E-14 122.4 48.4 509 677-1223 239-788 (799)
42 KOG0547 Translocase of outer m 99.5 1.4E-10 3.1E-15 123.6 37.0 224 638-902 334-564 (606)
43 KOG1915 Cell cycle control pro 99.5 4.5E-09 9.7E-14 111.6 47.8 439 629-1114 72-536 (677)
44 KOG1127 TPR repeat-containing 99.5 1.2E-07 2.6E-12 110.1 60.9 584 645-1240 473-1126(1238)
45 KOG1127 TPR repeat-containing 99.5 7E-07 1.5E-11 104.0 68.1 662 542-1234 473-1191(1238)
46 KOG1155 Anaphase-promoting com 99.5 1.4E-09 3E-14 115.5 41.3 382 801-1237 160-555 (559)
47 KOG0547 Translocase of outer m 99.5 3.3E-10 7.2E-15 120.9 36.0 416 773-1216 118-566 (606)
48 TIGR00540 hemY_coli hemY prote 99.5 6.5E-11 1.4E-15 137.1 33.6 256 952-1215 125-398 (409)
49 KOG1173 Anaphase-promoting com 99.5 7.2E-10 1.6E-14 120.9 38.3 282 944-1234 243-534 (611)
50 KOG1155 Anaphase-promoting com 99.5 8.5E-10 1.8E-14 117.1 37.2 360 837-1253 161-535 (559)
51 KOG1126 DNA-binding cell divis 99.5 7.6E-12 1.6E-16 139.2 22.6 192 1015-1215 421-619 (638)
52 KOG3785 Uncharacterized conser 99.4 4E-09 8.7E-14 107.7 39.2 490 638-1202 30-536 (557)
53 KOG2047 mRNA splicing factor [ 99.4 1.2E-07 2.5E-12 105.1 52.6 576 589-1209 76-716 (835)
54 PRK10747 putative protoheme IX 99.4 2.3E-10 4.9E-15 131.7 34.1 250 955-1215 128-389 (398)
55 KOG2047 mRNA splicing factor [ 99.4 1.2E-07 2.5E-12 105.1 51.2 164 702-869 104-277 (835)
56 PF13429 TPR_15: Tetratricopep 99.4 9.5E-13 2.1E-17 144.8 12.2 183 1027-1215 89-276 (280)
57 KOG1126 DNA-binding cell divis 99.4 2.7E-11 5.8E-16 135.0 23.1 199 979-1185 420-624 (638)
58 KOG4162 Predicted calmodulin-b 99.4 1.5E-07 3.3E-12 107.1 52.4 123 1053-1181 653-783 (799)
59 KOG3616 Selective LIM binding 99.4 1.9E-06 4.2E-11 96.3 69.0 230 219-485 620-850 (1636)
60 PRK10747 putative protoheme IX 99.4 1.2E-09 2.7E-14 125.6 36.4 288 186-487 92-389 (398)
61 TIGR00540 hemY_coli hemY prote 99.4 9.5E-10 2.1E-14 127.4 33.6 294 185-487 91-398 (409)
62 KOG1174 Anaphase-promoting com 99.4 1.1E-07 2.3E-12 99.8 43.9 310 922-1245 208-527 (564)
63 PF13429 TPR_15: Tetratricopep 99.3 5.5E-12 1.2E-16 138.8 12.6 262 564-867 13-275 (280)
64 KOG1156 N-terminal acetyltrans 99.3 6.6E-07 1.4E-11 99.9 51.1 431 399-905 17-469 (700)
65 KOG3785 Uncharacterized conser 99.3 4E-08 8.6E-13 100.6 37.2 445 186-732 30-493 (557)
66 COG3071 HemY Uncharacterized e 99.3 9.9E-09 2.2E-13 108.0 33.9 302 775-1114 87-390 (400)
67 KOG1173 Anaphase-promoting com 99.3 4.2E-08 9.2E-13 107.4 39.2 276 564-884 249-531 (611)
68 COG2956 Predicted N-acetylgluc 99.3 2.6E-09 5.6E-14 108.4 27.9 285 853-1145 48-346 (389)
69 COG2956 Predicted N-acetylgluc 99.3 3.4E-09 7.4E-14 107.6 28.5 222 643-905 48-279 (389)
70 COG3071 HemY Uncharacterized e 99.3 1.3E-08 2.7E-13 107.2 31.9 294 888-1216 97-390 (400)
71 PRK12370 invasion protein regu 99.2 2E-09 4.2E-14 129.8 28.2 247 192-453 275-535 (553)
72 KOG1156 N-terminal acetyltrans 99.2 1.1E-06 2.4E-11 98.2 46.6 128 981-1113 372-510 (700)
73 KOG3617 WD40 and TPR repeat-co 99.2 3.2E-06 7E-11 96.0 47.1 257 388-726 725-993 (1416)
74 PF13041 PPR_2: PPR repeat fam 99.2 4.6E-11 1E-15 90.7 5.9 49 352-400 1-49 (50)
75 PF13041 PPR_2: PPR repeat fam 99.2 5.7E-11 1.2E-15 90.2 6.3 49 422-470 1-49 (50)
76 KOG3617 WD40 and TPR repeat-co 99.2 5.2E-06 1.1E-10 94.4 47.4 251 562-866 915-1171(1416)
77 KOG0548 Molecular co-chaperone 99.1 8.5E-08 1.8E-12 104.8 30.9 237 982-1236 226-473 (539)
78 PRK12370 invasion protein regu 99.1 1.7E-08 3.7E-13 121.7 28.7 266 213-491 255-538 (553)
79 KOG2376 Signal recognition par 99.1 3E-06 6.4E-11 93.8 41.2 458 707-1212 19-516 (652)
80 KOG2376 Signal recognition par 99.1 1.4E-06 2.9E-11 96.4 38.6 124 772-899 378-515 (652)
81 TIGR02521 type_IV_pilW type IV 99.1 2.6E-08 5.7E-13 106.9 24.8 97 178-277 31-127 (234)
82 TIGR02521 type_IV_pilW type IV 99.1 3.8E-08 8.3E-13 105.6 25.1 63 215-278 32-94 (234)
83 KOG1129 TPR repeat-containing 99.0 6.2E-09 1.3E-13 105.4 16.4 230 949-1215 227-457 (478)
84 PF12569 NARP1: NMDA receptor- 99.0 3.7E-06 8.1E-11 97.5 41.6 129 878-1008 197-333 (517)
85 PF12569 NARP1: NMDA receptor- 99.0 1.9E-06 4.1E-11 99.8 39.2 290 745-1043 14-333 (517)
86 KOG1174 Anaphase-promoting com 99.0 3E-06 6.6E-11 89.2 35.9 289 885-1181 206-500 (564)
87 PRK11189 lipoprotein NlpI; Pro 99.0 1E-07 2.2E-12 104.8 26.2 234 994-1238 40-286 (296)
88 KOG1129 TPR repeat-containing 99.0 2.8E-08 6.1E-13 100.7 19.0 232 877-1114 225-458 (478)
89 KOG1840 Kinesin light chain [C 99.0 6.3E-08 1.4E-12 110.3 23.6 243 215-488 200-479 (508)
90 KOG1840 Kinesin light chain [C 99.0 1.9E-07 4.2E-12 106.4 27.5 204 986-1215 247-478 (508)
91 COG3063 PilF Tfp pilus assembl 99.0 8.2E-08 1.8E-12 93.6 20.7 196 1052-1253 37-238 (250)
92 KOG4340 Uncharacterized conser 98.9 1.9E-06 4.2E-11 86.5 28.3 313 181-584 13-335 (459)
93 PRK11189 lipoprotein NlpI; Pro 98.9 2.1E-07 4.5E-12 102.4 24.2 222 188-420 36-267 (296)
94 KOG0624 dsRNA-activated protei 98.9 3.1E-05 6.7E-10 79.8 37.2 305 811-1145 44-369 (504)
95 KOG0624 dsRNA-activated protei 98.9 1.2E-05 2.6E-10 82.7 32.5 340 839-1231 37-383 (504)
96 COG3063 PilF Tfp pilus assembl 98.9 1E-06 2.3E-11 86.1 23.4 198 215-418 36-236 (250)
97 cd05804 StaR_like StaR_like; a 98.8 9.8E-06 2.1E-10 93.2 33.9 309 177-489 5-337 (355)
98 KOG0548 Molecular co-chaperone 98.8 7.1E-06 1.5E-10 90.2 29.7 232 427-732 227-458 (539)
99 KOG4340 Uncharacterized conser 98.8 4E-06 8.7E-11 84.3 25.1 285 530-831 47-336 (459)
100 KOG2053 Mitochondrial inherita 98.8 0.0014 3.1E-08 77.0 51.6 161 1052-1214 438-606 (932)
101 cd05804 StaR_like StaR_like; a 98.7 2.3E-05 5.1E-10 90.1 34.6 273 211-489 3-294 (355)
102 KOG2053 Mitochondrial inherita 98.7 0.00073 1.6E-08 79.3 44.1 521 537-1077 19-606 (932)
103 PRK04841 transcriptional regul 98.6 9.2E-05 2E-09 97.0 37.7 262 955-1216 462-760 (903)
104 KOG1125 TPR repeat-containing 98.6 8.9E-06 1.9E-10 90.3 21.9 227 183-416 290-525 (579)
105 PF04733 Coatomer_E: Coatomer 98.6 2.5E-06 5.4E-11 92.2 17.6 151 953-1114 110-265 (290)
106 PF12854 PPR_1: PPR repeat 98.5 9.4E-08 2E-12 64.7 4.0 32 384-415 2-33 (34)
107 PF12854 PPR_1: PPR repeat 98.5 9.6E-08 2.1E-12 64.7 4.1 32 454-485 2-33 (34)
108 PF04733 Coatomer_E: Coatomer 98.5 2.8E-06 6.1E-11 91.8 16.2 152 330-489 110-266 (290)
109 KOG1125 TPR repeat-containing 98.5 1.3E-05 2.9E-10 88.9 21.3 247 813-1068 293-560 (579)
110 PLN02789 farnesyltranstransfer 98.5 6E-05 1.3E-09 82.7 26.2 207 186-401 45-267 (320)
111 PRK04841 transcriptional regul 98.5 0.00015 3.2E-09 95.1 34.3 59 565-624 697-760 (903)
112 KOG1914 mRNA cleavage and poly 98.4 0.0057 1.2E-07 67.9 42.8 207 996-1204 309-527 (656)
113 KOG1914 mRNA cleavage and poly 98.4 0.005 1.1E-07 68.3 37.8 423 766-1216 16-501 (656)
114 KOG1128 Uncharacterized conser 98.4 6E-05 1.3E-09 86.0 23.4 218 907-1145 395-615 (777)
115 PRK15359 type III secretion sy 98.4 6.4E-06 1.4E-10 79.4 13.9 101 1130-1235 37-138 (144)
116 PLN02789 farnesyltranstransfer 98.4 0.00016 3.5E-09 79.3 25.6 206 223-436 46-267 (320)
117 KOG1070 rRNA processing protei 98.3 0.00016 3.5E-09 88.0 26.2 230 979-1215 1457-1699(1710)
118 TIGR03302 OM_YfiO outer membra 98.3 8.3E-05 1.8E-09 79.5 21.2 186 174-383 29-232 (235)
119 PRK15179 Vi polysaccharide bio 98.3 5.7E-05 1.2E-09 91.3 21.0 161 174-348 82-242 (694)
120 KOG1128 Uncharacterized conser 98.2 6.8E-05 1.5E-09 85.6 19.8 215 178-416 398-614 (777)
121 TIGR03302 OM_YfiO outer membra 98.2 7.5E-05 1.6E-09 79.9 19.6 184 1014-1216 32-232 (235)
122 PRK14720 transcript cleavage f 98.2 0.00064 1.4E-08 82.9 27.7 277 910-1241 31-309 (906)
123 PRK10370 formate-dependent nit 98.2 0.00015 3.2E-09 74.0 18.6 118 1063-1216 52-173 (198)
124 PRK15179 Vi polysaccharide bio 98.2 0.0005 1.1E-08 83.4 26.0 139 1046-1191 82-226 (694)
125 KOG1070 rRNA processing protei 98.1 0.00076 1.6E-08 82.5 26.8 201 944-1151 1457-1668(1710)
126 KOG3081 Vesicle coat complex C 98.1 0.0011 2.3E-08 66.9 22.0 70 1030-1101 188-257 (299)
127 PRK10370 formate-dependent nit 98.1 9.7E-05 2.1E-09 75.4 15.3 120 191-317 52-174 (198)
128 KOG3081 Vesicle coat complex C 98.1 0.0015 3.2E-08 65.9 22.5 250 812-1078 15-270 (299)
129 PRK15359 type III secretion sy 98.0 0.0001 2.3E-09 70.9 14.3 100 178-280 24-123 (144)
130 KOG0553 TPR repeat-containing 98.0 3.9E-05 8.5E-10 78.7 11.4 105 1130-1240 94-200 (304)
131 PRK14720 transcript cleavage f 98.0 0.0014 3E-08 80.2 26.4 48 1187-1234 582-629 (906)
132 COG5010 TadD Flp pilus assembl 98.0 0.00042 9.2E-09 70.0 17.9 159 213-378 66-226 (257)
133 COG4783 Putative Zn-dependent 98.0 0.0042 9E-08 68.6 26.5 120 1091-1215 312-436 (484)
134 COG4783 Putative Zn-dependent 98.0 0.0024 5.2E-08 70.4 24.7 141 254-418 311-454 (484)
135 COG5010 TadD Flp pilus assembl 98.0 0.00097 2.1E-08 67.5 20.0 163 177-348 66-228 (257)
136 KOG3060 Uncharacterized conser 97.9 0.0031 6.8E-08 63.1 22.3 184 1030-1221 27-223 (289)
137 TIGR02552 LcrH_SycD type III s 97.9 0.00017 3.7E-09 69.3 13.6 96 1130-1230 30-126 (135)
138 PF07079 DUF1347: Protein of u 97.8 0.092 2E-06 57.5 44.1 219 995-1224 274-527 (549)
139 TIGR02552 LcrH_SycD type III s 97.8 0.00068 1.5E-08 65.0 14.8 110 164-279 6-115 (135)
140 KOG3060 Uncharacterized conser 97.8 0.0029 6.2E-08 63.4 18.6 183 1063-1252 25-218 (289)
141 TIGR00756 PPR pentatricopeptid 97.7 4.7E-05 1E-09 52.7 4.5 33 356-388 2-34 (35)
142 TIGR00756 PPR pentatricopeptid 97.7 5.3E-05 1.1E-09 52.4 4.2 33 426-458 2-34 (35)
143 PF09976 TPR_21: Tetratricopep 97.7 0.00095 2.1E-08 64.7 14.2 112 1098-1213 24-144 (145)
144 COG3898 Uncharacterized membra 97.7 0.13 2.7E-06 55.2 32.2 252 957-1221 132-397 (531)
145 PF07079 DUF1347: Protein of u 97.6 0.17 3.7E-06 55.5 41.5 140 534-677 13-179 (549)
146 PF13812 PPR_3: Pentatricopept 97.6 0.0001 2.2E-09 50.5 4.1 32 426-457 3-34 (34)
147 COG3898 Uncharacterized membra 97.6 0.17 3.7E-06 54.2 29.2 247 923-1185 133-396 (531)
148 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0027 5.9E-08 71.1 16.8 119 1055-1211 174-292 (395)
149 PLN03088 SGT1, suppressor of 97.5 0.0009 1.9E-08 75.6 13.2 102 1130-1236 15-117 (356)
150 PRK15363 pathogenicity island 97.5 0.0051 1.1E-07 58.1 15.7 91 1123-1216 41-132 (157)
151 PF13812 PPR_3: Pentatricopept 97.5 0.00014 3E-09 49.8 4.2 32 356-387 3-34 (34)
152 PF12895 Apc3: Anaphase-promot 97.4 0.00021 4.7E-09 61.5 5.5 82 1130-1213 2-84 (84)
153 PF09976 TPR_21: Tetratricopep 97.4 0.0037 8E-08 60.5 14.5 117 992-1111 23-144 (145)
154 KOG0553 TPR repeat-containing 97.4 0.0057 1.2E-07 63.3 15.9 95 989-1089 90-186 (304)
155 PF14559 TPR_19: Tetratricopep 97.4 0.00053 1.2E-08 56.2 6.5 67 1163-1232 2-68 (68)
156 KOG1130 Predicted G-alpha GTPa 97.3 0.00065 1.4E-08 72.0 8.2 283 955-1237 27-369 (639)
157 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0068 1.5E-07 68.0 16.5 126 214-348 169-294 (395)
158 PF14938 SNAP: Soluble NSF att 97.3 0.039 8.4E-07 60.4 22.4 84 1153-1238 156-247 (282)
159 PF01535 PPR: PPR repeat; Int 97.3 0.00029 6.3E-09 46.9 3.6 29 356-384 2-30 (31)
160 PF13432 TPR_16: Tetratricopep 97.3 0.00087 1.9E-08 54.3 7.1 64 1157-1223 2-65 (65)
161 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0049 1.1E-07 57.4 13.3 101 179-279 3-106 (119)
162 PF08579 RPM2: Mitochondrial r 97.3 0.0032 6.9E-08 54.8 10.1 80 392-471 28-116 (120)
163 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0058 1.3E-07 56.9 13.4 109 215-325 3-113 (119)
164 PF01535 PPR: PPR repeat; Int 97.2 0.00035 7.6E-09 46.6 3.5 29 391-419 2-30 (31)
165 PF10037 MRP-S27: Mitochondria 97.2 0.0025 5.5E-08 71.6 12.1 120 353-472 65-186 (429)
166 PRK10153 DNA-binding transcrip 97.2 0.0096 2.1E-07 70.2 17.4 156 1046-1232 333-495 (517)
167 cd00189 TPR Tetratricopeptide 97.2 0.0036 7.7E-08 55.3 10.9 94 181-277 3-96 (100)
168 KOG0550 Molecular chaperone (D 97.2 0.067 1.4E-06 57.8 21.3 85 1027-1113 261-349 (486)
169 KOG2041 WD40 repeat protein [G 97.2 0.36 7.7E-06 55.6 27.9 106 562-691 799-904 (1189)
170 PF13414 TPR_11: TPR repeat; P 97.2 0.0012 2.5E-08 54.3 6.9 64 1151-1215 2-66 (69)
171 PF08579 RPM2: Mitochondrial r 97.2 0.0032 6.9E-08 54.8 9.2 78 218-298 29-115 (120)
172 PRK02603 photosystem I assembl 97.2 0.011 2.4E-07 59.2 15.0 67 213-279 34-102 (172)
173 PF14938 SNAP: Soluble NSF att 97.1 0.016 3.6E-07 63.3 17.3 94 358-452 159-265 (282)
174 PF10037 MRP-S27: Mitochondria 97.1 0.005 1.1E-07 69.2 13.2 122 316-437 60-186 (429)
175 CHL00033 ycf3 photosystem I as 97.1 0.005 1.1E-07 61.5 11.3 94 214-311 35-137 (168)
176 PRK10866 outer membrane biogen 97.1 0.07 1.5E-06 56.5 20.3 80 177-258 31-113 (243)
177 PRK15363 pathogenicity island 97.1 0.01 2.3E-07 56.1 12.3 99 177-278 34-132 (157)
178 PF05843 Suf: Suppressor of fo 97.0 0.0071 1.5E-07 65.8 12.8 137 1087-1227 3-145 (280)
179 PF13281 DUF4071: Domain of un 97.0 0.07 1.5E-06 58.9 20.0 97 1133-1233 242-349 (374)
180 PRK10866 outer membrane biogen 97.0 0.14 3E-06 54.2 21.7 175 1022-1215 39-240 (243)
181 PLN03088 SGT1, suppressor of 97.0 0.011 2.5E-07 66.7 14.4 92 185-279 9-100 (356)
182 COG4700 Uncharacterized protei 96.9 0.11 2.3E-06 49.7 17.5 151 1022-1207 63-213 (251)
183 KOG0550 Molecular chaperone (D 96.9 0.36 7.8E-06 52.5 23.4 65 628-695 166-233 (486)
184 cd00189 TPR Tetratricopeptide 96.9 0.01 2.2E-07 52.3 10.8 94 217-315 3-96 (100)
185 PF06239 ECSIT: Evolutionarily 96.8 0.02 4.3E-07 56.8 12.6 102 285-403 45-152 (228)
186 PF06239 ECSIT: Evolutionarily 96.8 0.024 5.1E-07 56.3 12.6 88 387-474 45-153 (228)
187 PF10345 Cohesin_load: Cohesin 96.8 2.4 5.1E-05 52.3 35.1 190 1025-1215 371-605 (608)
188 PRK10153 DNA-binding transcrip 96.8 0.035 7.6E-07 65.6 16.7 148 1010-1190 332-489 (517)
189 COG4700 Uncharacterized protei 96.8 0.14 3E-06 49.0 16.9 132 1011-1144 85-220 (251)
190 PF13371 TPR_9: Tetratricopept 96.8 0.0072 1.6E-07 50.3 8.1 69 1159-1230 2-70 (73)
191 PF12895 Apc3: Anaphase-promot 96.7 0.0032 6.9E-08 54.2 6.0 80 1028-1110 2-83 (84)
192 CHL00033 ycf3 photosystem I as 96.7 0.027 5.9E-07 56.2 13.1 100 230-333 15-117 (168)
193 PRK02603 photosystem I assembl 96.7 0.058 1.2E-06 54.1 15.3 97 176-273 33-130 (172)
194 COG4235 Cytochrome c biogenesi 96.7 0.089 1.9E-06 55.2 16.6 99 1084-1216 155-256 (287)
195 KOG1130 Predicted G-alpha GTPa 96.6 0.061 1.3E-06 57.7 15.4 59 527-585 195-261 (639)
196 KOG1538 Uncharacterized conser 96.6 0.47 1E-05 54.2 22.6 101 664-799 746-846 (1081)
197 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.7 3.7E-05 47.8 37.9 141 1085-1230 397-543 (660)
198 PF13414 TPR_11: TPR repeat; P 96.5 0.0094 2E-07 48.9 7.0 63 178-242 3-66 (69)
199 PRK10803 tol-pal system protei 96.5 0.027 5.9E-07 60.0 12.1 90 1130-1225 156-253 (263)
200 PF12688 TPR_5: Tetratrico pep 96.5 0.088 1.9E-06 48.2 13.5 89 989-1077 10-102 (120)
201 KOG1258 mRNA processing protei 96.4 2.6 5.7E-05 48.7 34.3 117 821-939 61-180 (577)
202 KOG1538 Uncharacterized conser 96.4 0.21 4.4E-06 56.9 18.5 99 219-349 561-659 (1081)
203 PF13432 TPR_16: Tetratricopep 96.4 0.011 2.4E-07 47.7 6.9 59 220-279 3-61 (65)
204 PF05843 Suf: Suppressor of fo 96.4 0.063 1.4E-06 58.4 14.8 144 981-1129 2-149 (280)
205 COG4235 Cytochrome c biogenesi 96.4 0.085 1.8E-06 55.4 14.7 101 211-316 153-256 (287)
206 KOG2041 WD40 repeat protein [G 96.4 2.8 6E-05 48.7 30.3 156 302-484 678-847 (1189)
207 KOG2796 Uncharacterized conser 96.4 0.45 9.8E-06 48.3 18.6 132 982-1114 179-315 (366)
208 PF13525 YfiO: Outer membrane 96.3 0.39 8.5E-06 49.5 19.2 167 1022-1208 12-199 (203)
209 PF12688 TPR_5: Tetratrico pep 96.3 0.095 2.1E-06 47.9 12.5 60 183-242 6-66 (120)
210 PF14559 TPR_19: Tetratricopep 96.1 0.021 4.4E-07 46.7 7.0 54 189-244 2-55 (68)
211 KOG2796 Uncharacterized conser 96.1 1 2.3E-05 45.8 19.4 64 631-694 178-241 (366)
212 KOG2114 Vacuolar assembly/sort 96.1 4.9 0.00011 48.3 27.9 180 772-972 336-517 (933)
213 PF13428 TPR_14: Tetratricopep 96.1 0.013 2.7E-07 42.8 4.7 42 1188-1231 2-43 (44)
214 PF13424 TPR_12: Tetratricopep 96.0 0.025 5.4E-07 47.7 7.1 64 1152-1215 5-74 (78)
215 PF03704 BTAD: Bacterial trans 96.0 0.29 6.2E-06 47.4 15.5 114 1095-1224 16-138 (146)
216 KOG1941 Acetylcholine receptor 96.0 0.52 1.1E-05 50.1 17.5 261 981-1241 44-349 (518)
217 PRK10803 tol-pal system protei 95.9 0.12 2.6E-06 55.1 13.3 98 181-280 146-248 (263)
218 PF13525 YfiO: Outer membrane 95.9 0.47 1E-05 48.9 17.3 175 177-373 4-197 (203)
219 PRK15331 chaperone protein Sic 95.8 0.2 4.3E-06 47.9 12.7 91 1130-1226 50-141 (165)
220 KOG0543 FKBP-type peptidyl-pro 95.5 0.3 6.6E-06 53.3 14.4 121 1092-1234 215-336 (397)
221 COG4785 NlpI Lipoprotein NlpI, 95.5 1.3 2.8E-05 43.8 16.9 177 1032-1218 82-268 (297)
222 COG5107 RNA14 Pre-mRNA 3'-end 95.4 5.6 0.00012 44.0 38.2 93 375-472 30-122 (660)
223 PF13281 DUF4071: Domain of un 95.3 1.5 3.3E-05 48.7 19.0 103 176-278 139-255 (374)
224 PF04840 Vps16_C: Vps16, C-ter 95.3 6.1 0.00013 43.6 29.2 109 947-1075 179-287 (319)
225 PF03704 BTAD: Bacterial trans 95.0 0.71 1.5E-05 44.7 14.5 69 1052-1122 64-138 (146)
226 KOG2280 Vacuolar assembly/sort 95.0 11 0.00023 45.0 33.5 138 764-903 426-574 (829)
227 PF09205 DUF1955: Domain of un 95.0 1.4 3.1E-05 39.8 14.2 139 1062-1219 14-152 (161)
228 PF13371 TPR_9: Tetratricopept 95.0 0.08 1.7E-06 43.9 6.6 57 222-279 3-59 (73)
229 PF08631 SPO22: Meiosis protei 94.9 7.2 0.00016 42.5 24.5 102 1017-1120 86-192 (278)
230 KOG1585 Protein required for f 94.9 2.1 4.6E-05 43.3 16.6 35 172-206 25-59 (308)
231 PRK15331 chaperone protein Sic 94.8 0.37 8.1E-06 46.1 11.0 97 178-277 37-133 (165)
232 PF12921 ATP13: Mitochondrial 94.7 0.3 6.5E-06 45.2 10.1 95 322-434 2-98 (126)
233 KOG2610 Uncharacterized conser 94.6 1.9 4.2E-05 45.5 16.5 159 1060-1223 113-283 (491)
234 COG4105 ComL DNA uptake lipopr 94.6 6.5 0.00014 40.8 21.0 103 177-279 33-146 (254)
235 COG0457 NrfG FOG: TPR repeat [ 94.6 7.1 0.00015 41.0 28.8 216 994-1216 37-265 (291)
236 KOG1920 IkappaB kinase complex 94.5 19 0.00041 45.5 26.7 190 953-1179 859-1053(1265)
237 PF13424 TPR_12: Tetratricopep 94.5 0.12 2.5E-06 43.6 6.5 63 1051-1113 6-74 (78)
238 KOG1585 Protein required for f 94.4 2.7 5.9E-05 42.6 16.3 162 960-1139 73-249 (308)
239 PF04840 Vps16_C: Vps16, C-ter 94.4 10 0.00022 42.0 30.4 110 912-1041 179-288 (319)
240 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.98 2.1E-05 50.8 14.8 68 211-278 72-141 (453)
241 COG1729 Uncharacterized protei 94.4 0.57 1.2E-05 48.7 12.2 71 1151-1223 177-249 (262)
242 PF10300 DUF3808: Protein of u 94.3 0.98 2.1E-05 53.2 15.8 115 1098-1215 246-375 (468)
243 COG4785 NlpI Lipoprotein NlpI, 94.3 2.6 5.6E-05 41.8 15.5 68 211-279 96-163 (297)
244 COG0457 NrfG FOG: TPR repeat [ 94.3 8.1 0.00018 40.6 28.5 163 912-1078 61-230 (291)
245 KOG2114 Vacuolar assembly/sort 94.3 17 0.00036 44.1 29.4 55 530-587 337-396 (933)
246 PF13512 TPR_18: Tetratricopep 94.3 1.1 2.3E-05 42.0 12.5 88 177-264 9-97 (142)
247 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 0.19 4.1E-06 56.3 9.1 64 1151-1216 74-141 (453)
248 KOG1258 mRNA processing protei 94.3 14 0.0003 43.1 34.6 129 530-659 48-180 (577)
249 COG4105 ComL DNA uptake lipopr 94.2 8.2 0.00018 40.1 20.3 190 1013-1223 33-238 (254)
250 KOG1941 Acetylcholine receptor 94.1 3.8 8.3E-05 44.0 17.4 129 949-1077 126-273 (518)
251 KOG1920 IkappaB kinase complex 94.1 17 0.00038 45.7 25.4 20 329-348 684-703 (1265)
252 PF09205 DUF1955: Domain of un 94.1 1.7 3.7E-05 39.4 12.7 134 539-695 14-150 (161)
253 PF10345 Cohesin_load: Cohesin 94.0 21 0.00045 44.1 41.5 190 991-1180 372-605 (608)
254 KOG4555 TPR repeat-containing 93.9 0.73 1.6E-05 41.4 10.0 86 1130-1217 56-145 (175)
255 PF13428 TPR_14: Tetratricopep 93.7 0.19 4.2E-06 36.5 5.3 42 1153-1195 2-43 (44)
256 COG3629 DnrI DNA-binding trans 93.6 0.29 6.2E-06 51.8 8.5 95 162-258 136-236 (280)
257 PRK11906 transcriptional regul 93.5 1.3 2.8E-05 50.0 13.7 141 1065-1212 273-432 (458)
258 PF12921 ATP13: Mitochondrial 93.5 0.85 1.8E-05 42.3 10.5 80 389-468 2-97 (126)
259 PF08631 SPO22: Meiosis protei 93.4 14 0.00031 40.2 25.1 16 469-484 256-271 (278)
260 KOG4555 TPR repeat-containing 93.2 1 2.2E-05 40.6 9.7 99 181-281 46-147 (175)
261 COG2976 Uncharacterized protei 93.1 2.9 6.2E-05 41.1 13.5 86 1130-1217 102-189 (207)
262 COG1729 Uncharacterized protei 93.0 0.85 1.8E-05 47.5 10.6 101 181-281 144-247 (262)
263 PF13512 TPR_18: Tetratricopep 92.9 1.8 3.9E-05 40.6 11.5 92 1130-1223 23-133 (142)
264 KOG2610 Uncharacterized conser 92.7 4.9 0.00011 42.7 15.5 151 297-449 113-272 (491)
265 PRK11906 transcriptional regul 92.7 5.7 0.00012 45.0 17.1 82 230-316 320-401 (458)
266 KOG1586 Protein required for f 92.5 13 0.00029 37.7 20.3 48 1099-1146 128-183 (288)
267 KOG0543 FKBP-type peptidyl-pro 92.4 1.4 2.9E-05 48.5 11.6 124 220-348 214-352 (397)
268 COG4649 Uncharacterized protei 92.2 7.1 0.00015 37.5 14.3 92 1130-1221 107-201 (221)
269 PF13170 DUF4003: Protein of u 92.1 17 0.00038 39.6 19.8 142 1069-1210 81-240 (297)
270 PF04184 ST7: ST7 protein; In 92.0 5.2 0.00011 45.4 15.6 57 326-382 263-323 (539)
271 PF10300 DUF3808: Protein of u 91.8 3.5 7.6E-05 48.6 15.3 136 131-277 186-333 (468)
272 PF00515 TPR_1: Tetratricopept 91.7 0.36 7.9E-06 32.6 4.3 32 1188-1221 2-33 (34)
273 PF07719 TPR_2: Tetratricopept 91.7 0.32 7E-06 32.8 4.0 32 1188-1221 2-33 (34)
274 COG4649 Uncharacterized protei 91.6 9 0.00019 36.8 14.2 134 178-315 59-195 (221)
275 KOG4648 Uncharacterized conser 91.4 0.49 1.1E-05 49.8 6.6 126 1130-1260 110-247 (536)
276 COG3118 Thioredoxin domain-con 91.2 18 0.00039 38.4 17.6 148 1059-1210 143-295 (304)
277 COG3118 Thioredoxin domain-con 90.9 23 0.00049 37.7 17.9 144 848-994 142-286 (304)
278 smart00299 CLH Clathrin heavy 90.9 13 0.00028 35.5 15.8 85 182-275 11-95 (140)
279 PF04184 ST7: ST7 protein; In 90.8 7.3 0.00016 44.2 15.2 149 1054-1214 172-322 (539)
280 PF04053 Coatomer_WDAD: Coatom 90.7 3.8 8.2E-05 47.5 13.8 27 805-831 347-373 (443)
281 PF13431 TPR_17: Tetratricopep 90.6 0.27 5.9E-06 33.2 2.7 25 1148-1172 8-33 (34)
282 PF04097 Nic96: Nup93/Nic96; 90.4 52 0.0011 40.4 25.6 88 952-1044 265-356 (613)
283 PF04053 Coatomer_WDAD: Coatom 90.4 6.1 0.00013 45.9 15.1 154 816-1005 272-427 (443)
284 PF04097 Nic96: Nup93/Nic96; 90.3 53 0.0012 40.4 25.2 86 361-453 265-356 (613)
285 smart00299 CLH Clathrin heavy 90.3 17 0.00037 34.7 16.7 45 290-335 10-54 (140)
286 KOG3941 Intermediate in Toll s 90.2 2 4.3E-05 44.3 9.5 35 441-475 140-174 (406)
287 KOG1586 Protein required for f 90.2 23 0.0005 36.0 17.3 98 992-1118 85-187 (288)
288 KOG3941 Intermediate in Toll s 89.8 1.7 3.7E-05 44.8 8.6 104 944-1066 66-174 (406)
289 PF13176 TPR_7: Tetratricopept 89.7 0.66 1.4E-05 31.9 4.1 27 1189-1215 1-27 (36)
290 KOG4234 TPR repeat-containing 89.6 3.9 8.5E-05 40.1 10.4 74 1154-1230 136-209 (271)
291 KOG1550 Extracellular protein 89.1 19 0.00041 43.6 18.7 255 960-1234 227-517 (552)
292 PF13170 DUF4003: Protein of u 89.0 39 0.00085 36.9 19.9 25 303-327 78-102 (297)
293 COG2976 Uncharacterized protei 88.9 18 0.00039 35.8 14.4 96 390-490 55-157 (207)
294 KOG3364 Membrane protein invol 88.7 6.5 0.00014 36.1 10.4 89 1149-1240 29-122 (149)
295 COG1747 Uncharacterized N-term 88.6 51 0.0011 37.7 24.6 96 629-729 65-160 (711)
296 COG3947 Response regulator con 88.5 36 0.00078 35.9 17.2 69 1154-1223 281-354 (361)
297 PF07035 Mic1: Colon cancer-as 88.4 24 0.00053 34.4 15.1 135 756-904 15-149 (167)
298 COG0790 FOG: TPR repeat, SEL1 88.1 46 0.00099 36.6 21.4 84 1134-1224 172-274 (292)
299 COG1747 Uncharacterized N-term 88.0 55 0.0012 37.4 24.2 178 1014-1198 65-250 (711)
300 KOG2280 Vacuolar assembly/sort 87.8 71 0.0015 38.5 36.4 106 1087-1211 686-794 (829)
301 KOG1550 Extracellular protein 86.8 83 0.0018 38.2 24.7 149 888-1045 262-427 (552)
302 PF10602 RPN7: 26S proteasome 85.9 8.2 0.00018 38.5 10.9 64 214-277 36-101 (177)
303 KOG2396 HAT (Half-A-TPR) repea 85.7 74 0.0016 36.5 39.9 78 766-845 101-179 (568)
304 PF06552 TOM20_plant: Plant sp 85.6 4.3 9.3E-05 39.5 8.2 79 1133-1221 51-141 (186)
305 PF13431 TPR_17: Tetratricopep 85.5 1.2 2.6E-05 30.1 3.3 33 1175-1208 2-34 (34)
306 PF02259 FAT: FAT domain; Int 85.4 72 0.0016 36.2 23.1 64 1050-1113 146-212 (352)
307 PF13176 TPR_7: Tetratricopept 85.2 1.8 3.9E-05 29.7 4.2 27 1154-1180 1-27 (36)
308 PF07719 TPR_2: Tetratricopept 85.1 1.9 4.1E-05 28.9 4.3 29 1153-1181 2-30 (34)
309 PF13181 TPR_8: Tetratricopept 84.6 1.4 3.1E-05 29.5 3.5 27 1189-1215 3-29 (34)
310 PRK09687 putative lyase; Provi 84.4 66 0.0014 34.9 29.1 230 978-1232 35-277 (280)
311 PF00515 TPR_1: Tetratricopept 84.0 2.3 5E-05 28.6 4.3 29 1153-1181 2-30 (34)
312 COG3629 DnrI DNA-binding trans 83.7 9.7 0.00021 40.6 10.6 78 390-468 154-236 (280)
313 PRK09687 putative lyase; Provi 83.5 72 0.0016 34.7 26.9 23 1055-1078 240-262 (280)
314 PF09986 DUF2225: Uncharacteri 83.3 21 0.00045 36.9 12.8 81 1152-1232 118-210 (214)
315 KOG4279 Serine/threonine prote 83.2 14 0.00031 43.6 12.3 133 1097-1233 255-410 (1226)
316 TIGR03504 FimV_Cterm FimV C-te 82.9 2 4.4E-05 30.9 3.6 26 1192-1217 4-29 (44)
317 KOG4570 Uncharacterized conser 82.7 18 0.00039 38.4 11.7 101 800-904 59-164 (418)
318 PF09613 HrpB1_HrpK: Bacterial 82.3 49 0.0011 31.9 14.2 53 190-244 22-74 (160)
319 PF09613 HrpB1_HrpK: Bacterial 81.0 33 0.00072 33.1 12.0 85 991-1079 21-106 (160)
320 KOG2066 Vacuolar assembly/sort 80.5 1.5E+02 0.0032 36.2 26.3 73 396-474 363-438 (846)
321 PF02259 FAT: FAT domain; Int 80.5 1.1E+02 0.0024 34.7 24.3 62 947-1008 148-212 (352)
322 KOG4648 Uncharacterized conser 79.9 9.4 0.0002 40.7 8.7 60 219-279 102-161 (536)
323 PF14853 Fis1_TPR_C: Fis1 C-te 79.9 4.2 9.1E-05 30.8 4.6 42 1190-1233 4-45 (53)
324 KOG4234 TPR repeat-containing 79.8 34 0.00073 33.9 11.7 87 1025-1114 105-197 (271)
325 KOG4570 Uncharacterized conser 78.9 35 0.00075 36.4 12.2 101 351-453 61-164 (418)
326 COG2909 MalT ATP-dependent tra 78.9 1.8E+02 0.0039 36.2 28.2 222 260-484 426-684 (894)
327 PF10602 RPN7: 26S proteasome 78.3 25 0.00053 35.1 11.0 64 1050-1113 36-101 (177)
328 KOG2063 Vacuolar assembly/sort 77.9 2E+02 0.0044 36.4 21.2 26 843-868 507-532 (877)
329 TIGR02561 HrpB1_HrpK type III 77.7 66 0.0014 30.6 13.9 66 178-245 7-75 (153)
330 COG5159 RPN6 26S proteasome re 77.6 87 0.0019 33.0 14.4 86 1156-1243 129-225 (421)
331 KOG0890 Protein kinase of the 77.6 3.2E+02 0.0068 38.4 34.4 66 1152-1221 1670-1735(2382)
332 TIGR02561 HrpB1_HrpK type III 75.8 50 0.0011 31.4 11.2 66 300-367 23-89 (153)
333 PF13374 TPR_10: Tetratricopep 75.6 6.1 0.00013 27.8 4.5 28 1153-1180 3-30 (42)
334 PF13929 mRNA_stabil: mRNA sta 75.3 1.2E+02 0.0026 32.5 15.8 132 645-776 143-284 (292)
335 PF07035 Mic1: Colon cancer-as 75.3 86 0.0019 30.7 15.9 131 1071-1217 15-150 (167)
336 KOG2300 Uncharacterized conser 75.2 1.6E+02 0.0035 33.8 39.2 183 1061-1243 334-545 (629)
337 PF13374 TPR_10: Tetratricopep 74.5 6.6 0.00014 27.7 4.4 30 1187-1216 2-31 (42)
338 COG0790 FOG: TPR repeat, SEL1 74.4 1.4E+02 0.003 32.7 22.7 50 1131-1184 205-269 (292)
339 PF13174 TPR_6: Tetratricopept 74.0 4.8 0.00011 26.5 3.4 26 1190-1215 3-28 (33)
340 KOG2168 Cullins [Cell cycle co 73.7 2.4E+02 0.0052 35.1 25.3 25 809-833 329-353 (835)
341 TIGR02508 type_III_yscG type I 73.5 30 0.00064 30.0 8.3 79 302-384 20-98 (115)
342 KOG0276 Vesicle coat complex C 73.2 43 0.00094 39.0 12.1 133 323-485 615-747 (794)
343 TIGR02508 type_III_yscG type I 71.3 33 0.00072 29.7 8.1 62 361-429 46-107 (115)
344 PF11207 DUF2989: Protein of u 70.6 33 0.00072 34.4 9.4 75 1133-1208 122-199 (203)
345 PF13174 TPR_6: Tetratricopept 69.6 6.8 0.00015 25.8 3.3 28 1154-1181 2-29 (33)
346 KOG2471 TPR repeat-containing 69.1 2.2E+02 0.0047 32.7 24.6 63 1153-1215 620-683 (696)
347 COG4455 ImpE Protein of avirul 67.8 26 0.00056 35.3 7.9 95 1130-1236 14-117 (273)
348 PF02284 COX5A: Cytochrome c o 67.1 85 0.0018 27.6 9.7 47 1170-1216 28-74 (108)
349 PF07575 Nucleopor_Nup85: Nup8 67.0 1.8E+02 0.0039 35.6 17.0 59 874-934 404-462 (566)
350 PF13181 TPR_8: Tetratricopept 66.6 14 0.00031 24.5 4.4 29 1153-1181 2-30 (34)
351 KOG1464 COP9 signalosome, subu 65.7 1.8E+02 0.0038 30.4 16.6 191 611-826 43-252 (440)
352 PF07575 Nucleopor_Nup85: Nup8 64.6 3.4E+02 0.0073 33.2 18.9 32 1098-1129 508-539 (566)
353 PRK11619 lytic murein transgly 64.5 3.6E+02 0.0077 33.5 38.0 116 994-1112 255-373 (644)
354 KOG0276 Vesicle coat complex C 64.2 1.5E+02 0.0033 34.9 13.9 149 817-1005 598-746 (794)
355 KOG4507 Uncharacterized conser 63.6 42 0.0009 38.9 9.5 83 1130-1215 620-704 (886)
356 KOG4642 Chaperone-dependent E3 63.3 88 0.0019 32.2 10.6 83 1025-1111 20-104 (284)
357 KOG2396 HAT (Half-A-TPR) repea 63.3 2.9E+02 0.0063 32.1 41.1 91 160-256 90-181 (568)
358 PF11207 DUF2989: Protein of u 62.8 63 0.0014 32.6 9.6 73 266-342 123-198 (203)
359 KOG0687 26S proteasome regulat 62.6 1.5E+02 0.0032 32.1 12.6 103 1151-1254 103-210 (393)
360 COG3947 Response regulator con 62.4 2.2E+02 0.0048 30.4 17.0 58 1053-1112 282-340 (361)
361 PF07721 TPR_4: Tetratricopept 62.3 9.9 0.00022 23.7 2.7 19 1157-1175 6-24 (26)
362 PF07721 TPR_4: Tetratricopept 61.4 10 0.00022 23.6 2.6 23 1189-1211 3-25 (26)
363 KOG2066 Vacuolar assembly/sort 61.3 3.9E+02 0.0085 32.9 27.7 74 777-856 363-439 (846)
364 smart00028 TPR Tetratricopepti 60.8 12 0.00027 23.7 3.4 26 1190-1215 4-29 (34)
365 PF02284 COX5A: Cytochrome c o 60.1 99 0.0021 27.2 8.9 46 1033-1078 28-73 (108)
366 PRK13184 pknD serine/threonine 60.0 4.9E+02 0.011 33.7 26.9 400 701-1177 476-896 (932)
367 KOG2063 Vacuolar assembly/sort 59.9 4.7E+02 0.01 33.3 27.8 73 611-692 494-571 (877)
368 COG4455 ImpE Protein of avirul 59.8 2.1E+02 0.0045 29.2 12.8 72 1056-1129 7-81 (273)
369 KOG0687 26S proteasome regulat 59.4 2.7E+02 0.0058 30.4 15.0 93 1087-1179 106-208 (393)
370 PF09477 Type_III_YscG: Bacter 59.1 90 0.0019 27.7 8.5 87 300-392 19-106 (116)
371 PF00637 Clathrin: Region in C 59.0 4.3 9.3E-05 39.0 1.0 128 1021-1167 13-140 (143)
372 COG2909 MalT ATP-dependent tra 58.5 4.7E+02 0.01 32.9 36.8 29 1221-1249 859-887 (894)
373 cd00923 Cyt_c_Oxidase_Va Cytoc 58.4 60 0.0013 28.1 7.3 33 1010-1042 37-69 (103)
374 PF09986 DUF2225: Uncharacteri 58.3 1.3E+02 0.0027 31.2 11.5 53 1134-1186 142-199 (214)
375 PF08424 NRDE-2: NRDE-2, neces 58.2 2.5E+02 0.0055 31.3 14.8 136 646-801 47-185 (321)
376 PF13929 mRNA_stabil: mRNA sta 57.8 2.7E+02 0.0059 30.0 15.9 112 856-967 144-260 (292)
377 KOG4642 Chaperone-dependent E3 57.7 1.7E+02 0.0037 30.3 11.5 82 992-1077 22-105 (284)
378 KOG0376 Serine-threonine phosp 57.1 16 0.00035 41.4 5.0 98 1131-1233 18-116 (476)
379 PF06552 TOM20_plant: Plant sp 55.5 1.2E+02 0.0025 30.0 9.8 32 195-228 52-83 (186)
380 TIGR03504 FimV_Cterm FimV C-te 54.8 20 0.00043 26.0 3.5 26 564-589 4-29 (44)
381 KOG3364 Membrane protein invol 54.7 1.9E+02 0.004 27.1 10.3 71 1047-1120 29-104 (149)
382 cd00923 Cyt_c_Oxidase_Va Cytoc 54.0 1.5E+02 0.0033 25.8 9.5 46 1170-1215 25-70 (103)
383 PHA02875 ankyrin repeat protei 53.6 1.3E+02 0.0028 35.1 12.5 178 293-491 38-227 (413)
384 PRK11619 lytic murein transgly 53.3 5.3E+02 0.012 32.0 37.9 80 638-720 415-496 (644)
385 PF00637 Clathrin: Region in C 51.4 7.3 0.00016 37.4 1.2 53 952-1004 14-66 (143)
386 smart00028 TPR Tetratricopepti 51.2 24 0.00051 22.2 3.5 29 1153-1181 2-30 (34)
387 KOG4279 Serine/threonine prote 51.0 5.4E+02 0.012 31.4 15.9 57 949-1008 205-271 (1226)
388 KOG4521 Nuclear pore complex, 50.2 4.8E+02 0.01 33.8 15.8 141 215-370 921-1070(1480)
389 PF07163 Pex26: Pex26 protein; 50.0 1.1E+02 0.0024 32.5 9.1 87 707-793 90-181 (309)
390 KOG0292 Vesicle coat complex C 49.9 6.2E+02 0.013 31.7 21.7 48 815-868 653-700 (1202)
391 KOG4507 Uncharacterized conser 49.1 90 0.0019 36.4 9.1 121 799-921 601-721 (886)
392 PF10579 Rapsyn_N: Rapsyn N-te 47.7 47 0.001 27.5 4.9 50 1162-1211 16-67 (80)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 46.2 1.8E+02 0.0038 27.1 9.4 43 1135-1177 81-124 (126)
394 KOG0686 COP9 signalosome, subu 45.8 4.5E+02 0.0097 29.7 13.3 16 1130-1145 317-332 (466)
395 PF10579 Rapsyn_N: Rapsyn N-te 45.8 48 0.001 27.5 4.7 47 1062-1108 18-66 (80)
396 COG5187 RPN7 26S proteasome re 45.7 2.1E+02 0.0045 30.4 10.3 73 1149-1221 112-189 (412)
397 KOG2471 TPR repeat-containing 45.6 5.2E+02 0.011 29.9 13.9 103 1130-1234 253-380 (696)
398 KOG0545 Aryl-hydrocarbon recep 45.6 3E+02 0.0066 28.6 11.1 67 1154-1223 232-298 (329)
399 PRK10941 hypothetical protein; 44.9 1.6E+02 0.0035 31.6 10.1 68 1155-1225 184-251 (269)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 44.8 2.6E+02 0.0056 26.0 10.2 59 1153-1213 66-125 (126)
401 KOG1308 Hsp70-interacting prot 44.4 14 0.0003 39.9 1.9 114 1097-1215 126-243 (377)
402 KOG0889 Histone acetyltransfer 44.4 1.4E+03 0.03 34.3 30.1 217 776-1008 2420-2660(3550)
403 PF07163 Pex26: Pex26 protein; 43.7 2.3E+02 0.005 30.2 10.3 87 987-1073 90-181 (309)
404 PF14853 Fis1_TPR_C: Fis1 C-te 42.4 77 0.0017 24.1 5.1 38 1154-1193 3-40 (53)
405 PF11846 DUF3366: Domain of un 42.1 1.1E+02 0.0023 31.1 8.2 36 1183-1220 140-175 (193)
406 PRK12798 chemotaxis protein; R 42.0 5.8E+02 0.013 29.2 20.6 108 551-658 101-213 (421)
407 PF09670 Cas_Cas02710: CRISPR- 41.4 2.7E+02 0.0058 31.9 11.8 53 1025-1078 141-197 (379)
408 KOG0403 Neoplastic transformat 41.4 5.9E+02 0.013 29.1 28.1 61 1054-1115 513-573 (645)
409 PF12862 Apc5: Anaphase-promot 41.0 1.3E+02 0.0028 26.2 7.3 55 1162-1216 8-70 (94)
410 PF10366 Vps39_1: Vacuolar sor 40.9 2.5E+02 0.0055 25.2 9.2 27 632-658 41-67 (108)
411 KOG1464 COP9 signalosome, subu 39.7 4.7E+02 0.01 27.5 25.1 257 924-1194 41-344 (440)
412 PF08424 NRDE-2: NRDE-2, neces 39.6 5.8E+02 0.012 28.4 16.7 78 265-347 47-127 (321)
413 KOG2062 26S proteasome regulat 39.6 8.1E+02 0.018 30.2 38.9 117 714-833 515-634 (929)
414 PF14561 TPR_20: Tetratricopep 39.0 1.6E+02 0.0034 25.5 7.2 53 1151-1203 21-74 (90)
415 KOG2034 Vacuolar sorting prote 38.8 9.1E+02 0.02 30.5 24.4 171 294-485 365-556 (911)
416 PRK15180 Vi polysaccharide bio 37.3 7E+02 0.015 28.7 30.0 90 534-625 296-387 (831)
417 PF00244 14-3-3: 14-3-3 protei 37.3 1.8E+02 0.0039 30.6 9.0 58 1020-1077 6-64 (236)
418 KOG0890 Protein kinase of the 37.1 1.5E+03 0.032 32.5 35.6 322 219-588 1388-1731(2382)
419 PF14669 Asp_Glu_race_2: Putat 36.8 4.5E+02 0.0097 26.3 15.1 55 845-899 137-205 (233)
420 PF04910 Tcf25: Transcriptiona 36.7 6.8E+02 0.015 28.4 20.1 155 319-489 37-223 (360)
421 COG2137 OraA Uncharacterized p 36.3 4.4E+02 0.0096 26.1 12.8 129 305-452 36-166 (174)
422 PHA02875 ankyrin repeat protei 35.9 7.5E+02 0.016 28.7 15.8 27 564-594 204-230 (413)
423 KOG2659 LisH motif-containing 35.6 4.3E+02 0.0093 27.4 10.7 97 1046-1144 22-130 (228)
424 smart00777 Mad3_BUB1_I Mad3/BU 35.5 1.8E+02 0.004 26.9 7.5 41 1171-1211 82-123 (125)
425 PF15297 CKAP2_C: Cytoskeleton 34.9 2.9E+02 0.0062 30.6 9.9 62 1135-1198 121-186 (353)
426 PF14561 TPR_20: Tetratricopep 34.6 2.3E+02 0.0051 24.4 7.7 32 177-208 21-52 (90)
427 KOG2581 26S proteasome regulat 34.6 7.3E+02 0.016 28.1 15.4 135 976-1114 120-276 (493)
428 COG4976 Predicted methyltransf 34.5 61 0.0013 33.0 4.5 58 1162-1222 5-62 (287)
429 COG4941 Predicted RNA polymera 34.5 6.1E+02 0.013 27.9 11.8 32 1063-1095 269-300 (415)
430 PF12862 Apc5: Anaphase-promot 34.2 1.8E+02 0.004 25.2 7.2 27 1154-1180 43-69 (94)
431 PF14689 SPOB_a: Sensor_kinase 34.1 90 0.002 24.7 4.6 21 465-485 29-49 (62)
432 PF09477 Type_III_YscG: Bacter 34.0 3.5E+02 0.0075 24.2 9.5 86 1030-1123 21-106 (116)
433 PRK13800 putative oxidoreducta 33.5 1.2E+03 0.027 30.4 25.0 60 1049-1112 788-847 (897)
434 PF00244 14-3-3: 14-3-3 protei 32.4 5.5E+02 0.012 27.0 11.6 57 951-1007 7-64 (236)
435 KOG2582 COP9 signalosome, subu 32.2 7.5E+02 0.016 27.6 14.0 20 1163-1182 327-346 (422)
436 PRK12798 chemotaxis protein; R 32.2 8.2E+02 0.018 28.0 21.4 188 958-1150 125-328 (421)
437 PF13762 MNE1: Mitochondrial s 32.1 4.6E+02 0.01 25.1 10.0 81 948-1028 42-128 (145)
438 PF07720 TPR_3: Tetratricopept 31.4 1.2E+02 0.0026 20.9 4.2 19 1191-1209 5-23 (36)
439 KOG2034 Vacuolar sorting prote 31.4 1.2E+03 0.025 29.6 25.9 256 776-1066 364-644 (911)
440 COG4259 Uncharacterized protei 31.2 2.2E+02 0.0047 24.8 6.5 52 1174-1227 59-110 (121)
441 KOG4521 Nuclear pore complex, 30.8 6E+02 0.013 33.0 12.6 55 1053-1108 986-1044(1480)
442 KOG2062 26S proteasome regulat 30.4 1.1E+03 0.024 29.0 44.1 121 849-973 510-634 (929)
443 PRK14956 DNA polymerase III su 30.3 6.1E+02 0.013 29.9 12.3 36 1151-1186 247-282 (484)
444 KOG0292 Vesicle coat complex C 29.8 85 0.0018 38.6 5.4 71 1130-1215 656-726 (1202)
445 COG5159 RPN6 26S proteasome re 29.7 7.2E+02 0.016 26.6 21.6 116 1030-1145 100-234 (421)
446 smart00777 Mad3_BUB1_I Mad3/BU 29.7 2.2E+02 0.0048 26.4 7.0 74 1102-1177 50-124 (125)
447 cd08819 CARD_MDA5_2 Caspase ac 29.5 2.9E+02 0.0062 23.7 6.9 39 436-479 48-86 (88)
448 cd00280 TRFH Telomeric Repeat 29.4 3.6E+02 0.0077 26.9 8.5 63 542-607 84-156 (200)
449 COG0735 Fur Fe2+/Zn2+ uptake r 28.7 2.5E+02 0.0053 27.0 7.6 60 1174-1234 8-67 (145)
450 KOG2582 COP9 signalosome, subu 28.6 8.7E+02 0.019 27.2 15.9 56 1060-1115 287-346 (422)
451 cd00280 TRFH Telomeric Repeat 28.5 4.7E+02 0.01 26.1 9.1 48 1133-1180 85-139 (200)
452 KOG1114 Tripeptidyl peptidase 28.5 1.2E+03 0.026 29.8 14.2 163 1067-1237 1092-1281(1304)
453 KOG2297 Predicted translation 28.1 8E+02 0.017 26.6 18.5 21 840-860 321-341 (412)
454 PF14689 SPOB_a: Sensor_kinase 27.8 1.3E+02 0.0029 23.7 4.6 23 1055-1077 28-50 (62)
455 PF13762 MNE1: Mitochondrial s 27.8 5.5E+02 0.012 24.6 9.7 49 629-677 78-127 (145)
456 KOG4077 Cytochrome c oxidase, 27.8 3.2E+02 0.007 25.2 7.3 60 1135-1195 67-126 (149)
457 COG2178 Predicted RNA-binding 27.7 5E+02 0.011 26.1 9.2 24 325-348 32-55 (204)
458 PRK10941 hypothetical protein; 27.7 4.9E+02 0.011 28.0 10.4 61 218-279 185-245 (269)
459 COG5187 RPN7 26S proteasome re 27.5 7.9E+02 0.017 26.4 18.3 96 354-451 115-219 (412)
460 smart00386 HAT HAT (Half-A-TPR 27.5 1.2E+02 0.0025 19.4 3.8 14 1202-1215 2-15 (33)
461 PF04190 DUF410: Protein of un 27.2 8E+02 0.017 26.3 18.2 159 540-729 3-170 (260)
462 PF11663 Toxin_YhaV: Toxin wit 26.5 56 0.0012 30.3 2.5 30 1062-1093 107-136 (140)
463 PF13934 ELYS: Nuclear pore co 26.3 6.9E+02 0.015 26.1 11.0 104 290-401 79-184 (226)
464 KOG1308 Hsp70-interacting prot 26.1 80 0.0017 34.4 4.0 22 1097-1118 194-215 (377)
465 PF09670 Cas_Cas02710: CRISPR- 25.8 8E+02 0.017 28.1 12.3 54 364-418 141-198 (379)
466 PF11848 DUF3368: Domain of un 25.6 2.3E+02 0.0049 21.0 5.2 35 296-330 11-45 (48)
467 KOG0376 Serine-threonine phosp 25.5 1.6E+02 0.0035 33.9 6.4 99 224-329 14-112 (476)
468 PF11848 DUF3368: Domain of un 25.4 2.3E+02 0.0049 21.0 5.2 30 401-430 14-43 (48)
469 KOG0686 COP9 signalosome, subu 25.1 1.1E+03 0.023 27.0 15.8 62 214-275 150-213 (466)
470 cd08819 CARD_MDA5_2 Caspase ac 25.1 4.4E+02 0.0096 22.6 7.4 65 198-269 22-86 (88)
471 KOG3824 Huntingtin interacting 25.0 2E+02 0.0042 30.8 6.4 58 1163-1223 127-184 (472)
472 PF02184 HAT: HAT (Half-A-TPR) 24.9 1.4E+02 0.0031 20.0 3.4 23 1168-1192 3-25 (32)
473 PF04762 IKI3: IKI3 family; I 24.8 1.7E+03 0.036 29.2 17.1 110 983-1110 815-926 (928)
474 TIGR02710 CRISPR-associated pr 24.7 8.2E+02 0.018 27.8 11.7 16 1164-1179 258-273 (380)
475 PF04190 DUF410: Protein of un 24.5 8.9E+02 0.019 25.9 18.4 103 712-829 2-114 (260)
476 COG2178 Predicted RNA-binding 24.5 7.4E+02 0.016 25.0 10.7 19 470-488 132-150 (204)
477 PRK10564 maltose regulon perip 24.4 1.5E+02 0.0033 32.0 5.6 36 386-421 253-289 (303)
478 KOG2297 Predicted translation 23.8 9.6E+02 0.021 26.1 15.6 73 362-444 263-341 (412)
479 PF11846 DUF3366: Domain of un 22.9 2.7E+02 0.0058 28.2 7.2 32 421-452 141-172 (193)
480 PRK14958 DNA polymerase III su 22.7 7.8E+02 0.017 29.5 11.9 19 263-281 259-277 (509)
481 PF10255 Paf67: RNA polymerase 22.5 1.2E+03 0.026 26.8 14.0 58 529-586 124-191 (404)
482 PHA03100 ankyrin repeat protei 22.5 7.8E+02 0.017 29.2 12.4 207 269-483 48-271 (480)
483 PF13934 ELYS: Nuclear pore co 22.3 9.1E+02 0.02 25.2 13.4 20 360-379 114-133 (226)
484 PF10475 DUF2450: Protein of u 22.0 1E+03 0.022 26.1 11.8 26 290-315 130-155 (291)
485 PF11663 Toxin_YhaV: Toxin wit 21.7 96 0.0021 28.8 3.1 29 1197-1225 105-133 (140)
486 PF11838 ERAP1_C: ERAP1-like C 21.7 1.1E+03 0.024 26.0 21.2 91 396-489 136-231 (324)
487 PRK12323 DNA polymerase III su 21.2 1.4E+03 0.03 28.3 13.3 15 191-205 216-230 (700)
488 PF06957 COPI_C: Coatomer (COP 20.2 6.9E+02 0.015 28.9 10.1 38 465-504 124-161 (422)
489 PRK14956 DNA polymerase III su 20.1 1.4E+03 0.03 27.1 12.7 36 388-423 247-282 (484)
490 PRK10564 maltose regulon perip 20.1 1.6E+02 0.0035 31.8 4.8 46 351-396 253-299 (303)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-78 Score=772.32 Aligned_cols=764 Identities=16% Similarity=0.176 Sum_probs=617.0
Q ss_pred cChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 000837 247 PFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFN 326 (1262)
Q Consensus 247 p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 326 (1262)
|+..++|.++.+|++.|++++|+.+|++|.+.|+. |+..+|..++.+|.+.+.++.|.+++..+.+.|..++..++|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVP---VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34455555555555555555555555555555555 666677777777777777888888888888888889999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 000837 327 EVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLR 406 (1262)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 406 (1262)
.++.+|++.|+++.|.++|++|. .||+++||++|.+|++.|++++|.++|++|...|+.||..||++++.+|++.++++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999996 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000837 407 SALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMA 486 (1262)
Q Consensus 407 ~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 486 (1262)
.+.+++.+|.+.|+.||..+||+||.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|.++|++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999975 688999999999999999999999999888
Q ss_pred HcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHH
Q 000837 487 KSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLI 566 (1262)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li 566 (1262)
+.|..
T Consensus 281 ~~g~~--------------------------------------------------------------------------- 285 (857)
T PLN03077 281 ELSVD--------------------------------------------------------------------------- 285 (857)
T ss_pred HcCCC---------------------------------------------------------------------------
Confidence 76654
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCCh
Q 000837 567 KMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLV 646 (1262)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 646 (1262)
||..||+.++.++++.++ .+.|.+++..|.+.|..||..+||+|+.+|++.|++
T Consensus 286 -------------------------Pd~~ty~~ll~a~~~~g~-~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 286 -------------------------PDLMTITSVISACELLGD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred -------------------------CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 555555555555555554 555555555555555666777777777777777777
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHH
Q 000837 647 RDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECM 726 (1262)
Q Consensus 647 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 726 (1262)
++|.++|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.
T Consensus 340 ~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~------------------ 397 (857)
T PLN03077 340 GEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS------------------ 397 (857)
T ss_pred HHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH------------------
Confidence 777777777753 4666777777777777777777777777766665555555555554
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 000837 727 LVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLD 806 (1262)
Q Consensus 727 ~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 806 (1262)
+|++.|+++.|.++++.+.+.|+.|+..
T Consensus 398 ----------------------------------------------------a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 398 ----------------------------------------------------ACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred ----------------------------------------------------HHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 4455555555556666666677778888
Q ss_pred cHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 000837 807 VSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHC 886 (1262)
Q Consensus 807 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 886 (1262)
+++.|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|+
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 888888888888888888888888754 4778999999999999999999999999986 69999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 000837 887 EANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKR 966 (1262)
Q Consensus 887 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 966 (1262)
+.|+++.+.+++..+++.|+.++..+++.|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 5799999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHH-HCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 000837 967 VLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMV-SKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKG 1045 (1262)
Q Consensus 967 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 1045 (1262)
+|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--- 652 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--- 652 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---
Confidence 99999999999999999999999999999999999999999 58999999999999999999999999999999984
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 000837 1046 LVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYD 1124 (1262)
Q Consensus 1046 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1124 (1262)
+.||..+|++|+.+|...|+.+.|+...+++.+ +.|+ ...|..|...|+..|++++|.++.+.|.+.|+.+++-..+
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 789999999999999999999999999999987 4565 6778888899999999999999999999999988765443
Q ss_pred HHHcc------cCC-----hhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HH----HHHCC--
Q 000837 1125 SIIST------CNK-----LDP----AMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLL-IS----MVQLG-- 1182 (1262)
Q Consensus 1125 ~ll~~------~g~-----~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~-~~----~~~~~-- 1182 (1262)
.-+.. .|+ .++ -.++..+|.+.|..|+.... + +. .+ ++-+..+ .. ++..|
T Consensus 731 ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~--~-~~----~~-~~k~~~~~~hse~la~a~~l~ 802 (857)
T PLN03077 731 VEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSS--M-DE----IE-VSKDDIFCGHSERLAIAFGLI 802 (857)
T ss_pred EEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchh--c-cc----cH-HHHHHHHHhccHHHHHHHhhh
Confidence 33322 222 122 23455667777888874321 1 11 00 1111111 00 01111
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 000837 1183 -DTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGY 1218 (1262)
Q Consensus 1183 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 1218 (1262)
.+|.. -..+.+.++..||...|.++.-++..+.+
T Consensus 803 ~~~~~~--~i~i~knlr~c~dch~~~k~~s~~~~r~i 837 (857)
T PLN03077 803 NTVPGM--PIWVTKNLYMCENCHNTVKFISKIVRREI 837 (857)
T ss_pred cCCCCC--eEEEeCCCEeCccHHHHHHHHHHHhCeEE
Confidence 12221 13345667777888888888887776543
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-76 Score=750.74 Aligned_cols=683 Identities=17% Similarity=0.215 Sum_probs=578.3
Q ss_pred CCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 000837 351 TPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSL 430 (1262)
Q Consensus 351 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l 430 (1262)
.|...++|.++.+|++.|++++|..+|++|.+.|+.|+..+|..++..|.+.+.++.|..++..+.+.|+.++...+|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCC
Q 000837 431 ISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLN 510 (1262)
Q Consensus 431 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1262)
|.+|++.|+++.|.++|++|.+ ||.++|+++|.+|++.|++++|.++|++|...|..
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~------------------- 184 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR------------------- 184 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------------------
Confidence 9999999999999999999975 68899999999999999999999999999888876
Q ss_pred hhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 000837 511 PSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQ 590 (1262)
Q Consensus 511 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 590 (1262)
||..||+.+ +.+|++.+++..+.+++..|.+.|.
T Consensus 185 --------------Pd~~t~~~l--------------------------------l~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 185 --------------PDVYTFPCV--------------------------------LRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred --------------CChhHHHHH--------------------------------HHHhCCccchhhHHHHHHHHHHcCC
Confidence 777776543 4445555666666666666777777
Q ss_pred CCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHH
Q 000837 591 ELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTT 670 (1262)
Q Consensus 591 ~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 670 (1262)
.|+..++++||.+|++.|+ +++|.++|++|.. +|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 219 ~~~~~~~n~Li~~y~k~g~-~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGD-VVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred CcccchHhHHHHHHhcCCC-HHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 7777777777777766666 6666666666642 4666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 000837 671 LLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGF 750 (1262)
Q Consensus 671 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 750 (1262)
++.+|++.|+.+.|.+++..|.+.|+.|
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~---------------------------------------------------- 321 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAV---------------------------------------------------- 321 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcc----------------------------------------------------
Confidence 6666666666666666666555544333
Q ss_pred cccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHH
Q 000837 751 SSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREI 830 (1262)
Q Consensus 751 ~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 830 (1262)
|..+|+.|+.+|++.|++++|.++|++|
T Consensus 322 ------------------d~~~~n~Li~~y~k~g~~~~A~~vf~~m---------------------------------- 349 (857)
T PLN03077 322 ------------------DVSVCNSLIQMYLSLGSWGEAEKVFSRM---------------------------------- 349 (857)
T ss_pred ------------------chHHHHHHHHHHHhcCCHHHHHHHHhhC----------------------------------
Confidence 3333333333333333333333444333
Q ss_pred HhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCh
Q 000837 831 SLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSI 910 (1262)
Q Consensus 831 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 910 (1262)
. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+.
T Consensus 350 -~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 350 -E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred -C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 2 23566788888888888888899999999988899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 000837 911 SSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGF 990 (1262)
Q Consensus 911 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 990 (1262)
.+++.|+++|++.|++++|.++|+.|.+ +|.++|+.|+.+|.+.|+.++|+++|++|.. ++.||..||+.++.+|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 9999999999999999999999998865 5889999999999999999999999999986 5999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 000837 991 SKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAE 1070 (1262)
Q Consensus 991 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 1070 (1262)
++.|+++.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .||..+|++|+.+|++.|+.++|+
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 579999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHC
Q 000837 1071 HFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIML-KKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMAR 1146 (1262)
Q Consensus 1071 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~ 1146 (1262)
++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|..++.. .|++++|.+++++|.
T Consensus 575 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-- 652 (857)
T PLN03077 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-- 652 (857)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--
Confidence 999999999999999999999999999999999999999999 56999999999999998 899999999999984
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHH
Q 000837 1147 DLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHW 1226 (1262)
Q Consensus 1147 ~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1226 (1262)
+.|+..+|..|+.+|...|+.+.++...+++.+. .+.+...|..+.+.|...|+|++|.++.+.|.+.|+++++..+|
T Consensus 653 -~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 653 -ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL-DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 7899999999999999999999999999999985 24468888899999999999999999999999999998876665
Q ss_pred HHHH
Q 000837 1227 SLIS 1230 (1262)
Q Consensus 1227 ~~l~ 1230 (1262)
.-+.
T Consensus 731 ie~~ 734 (857)
T PLN03077 731 VEVK 734 (857)
T ss_pred EEEC
Confidence 5443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-64 Score=619.32 Aligned_cols=543 Identities=17% Similarity=0.217 Sum_probs=466.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCc-cChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchH
Q 000837 212 KSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLV-PFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSF 290 (1262)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~ 290 (1262)
.+...|..++..|++.|++++|+++|++|.+.|+. ++...++.++.++.+.|..++|+.+|+.|.. |+..+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~~Ty 440 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTLSTF 440 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCHHHH
Confidence 35577888999999999999999999999999864 6778888899999999999999999998853 899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCCCcccHHHHHHHHHhh
Q 000837 291 HDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM---KCTPDVLAGNRIIHTLCSI 367 (1262)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~li~~~~~~ 367 (1262)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| +..||..+|+.||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 000837 368 FGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILS--RGLNPDVHTYNSLISGMFKEGMSKHAKE 445 (1262)
Q Consensus 368 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~y~~li~~~~~~g~~~~A~~ 445 (1262)
|++++|.++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6899999999999999999999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCC
Q 000837 446 ILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFS 525 (1262)
Q Consensus 446 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 525 (1262)
+|++|.+.|+.|+..+|+++|.+||+.|++++|.++|++|.+.|.. |
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~---------------------------------P 647 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK---------------------------------P 647 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------------C
Confidence 9999999999999999999999999999999999999999999987 8
Q ss_pred chhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 000837 526 KVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLC 605 (1262)
Q Consensus 526 ~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 605 (1262)
|..+|+ .++.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|+
T Consensus 648 D~~Tyn--------------------------------sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 648 DEVFFS--------------------------------ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred CHHHHH--------------------------------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888865 667788999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHH
Q 000837 606 ASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLH 685 (1262)
Q Consensus 606 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 685 (1262)
+.|+ +++|.++|++|.+.+..||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 696 k~G~-~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 696 NAKN-WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred hCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcC
Q 000837 686 AFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQG 765 (1262)
Q Consensus 686 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g 765 (1262)
++|.+|.+.|+.||..+|+.++..|. +.++++.++.+.+..-++ +
T Consensus 775 ~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~---------------------------------g 819 (1060)
T PLN03218 775 DLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS---------------------------------G 819 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc---------------------------------c
Confidence 99999999999999999999986543 246666555443321111 0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHH
Q 000837 766 CNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSA 845 (1262)
Q Consensus 766 ~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 845 (1262)
...+.. +..+.|..+|++|.+.|+.||..+|+.++..+++.+..+.+..+++.+...+..|+..+|++
T Consensus 820 ~~~~~n------------~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~ 887 (1060)
T PLN03218 820 RPQIEN------------KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST 887 (1060)
T ss_pred cccccc------------chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHH
Confidence 011111 11234666666666666666666666666555556666666666666655555566666666
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 000837 846 FISGFCVTGKAEEASKLFRDMLSQGMLLEDE 876 (1262)
Q Consensus 846 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 876 (1262)
+++++.+. .++|..+|++|...|+.|+..
T Consensus 888 Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 888 LVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 66665322 245666666666666666553
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-63 Score=612.33 Aligned_cols=544 Identities=17% Similarity=0.224 Sum_probs=420.1
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHH
Q 000837 285 LEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGL-EPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHT 363 (1262)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 363 (1262)
++...|..++..|++.|++++|.++|++|.+.|+ +++..+++.++.+|++.|.+++|..+|+.|.. ||..+|+.+|.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a 446 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSV 446 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 6778899999999999999999999999999885 56788888899999999999999999999964 999999999999
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000837 364 LCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHA 443 (1262)
Q Consensus 364 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A 443 (1262)
|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcccCccchhhhhHHHhcCCChhhhhhccccc
Q 000837 444 KEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK--SGLIELSSLEDPLSKGFMILGLNPSAVRLRRDND 521 (1262)
Q Consensus 444 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1262)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .++.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~------------------------------ 576 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID------------------------------ 576 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC------------------------------
Confidence 99999999999999999999999999999999999999999986 3444
Q ss_pred cCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 000837 522 MGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALV 601 (1262)
Q Consensus 522 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 601 (1262)
||..+|+ .++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|
T Consensus 577 ---PD~vTyn--------------------------------aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 577 ---PDHITVG--------------------------------ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred ---CcHHHHH--------------------------------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 7766654 56777888888888888888888888888888888888
Q ss_pred HHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCH
Q 000837 602 KGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFI 681 (1262)
Q Consensus 602 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 681 (1262)
.+|++.|+ +++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++
T Consensus 622 ~ay~k~G~-~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 622 NSCSQKGD-WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 88888887 88888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHH
Q 000837 682 KDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEEL 761 (1262)
Q Consensus 682 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~ 761 (1262)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~---------------------------------- 746 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK---------------------------------- 746 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------------------
Confidence 8888888888777777777777777777777777777766666553
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH
Q 000837 762 LQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFS 841 (1262)
Q Consensus 762 ~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 841 (1262)
..|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +.+++|.++.+.+.....
T Consensus 747 -~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----- 818 (1060)
T PLN03218 747 -RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----- 818 (1060)
T ss_pred -HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc-----
Confidence 456677777777777777777777777777777777777777777777765443 234555444333221100
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHH
Q 000837 842 FHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMC 921 (1262)
Q Consensus 842 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 921 (1262)
.......+..++|+.+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.++++++
T Consensus 819 -----g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 819 -----GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred -----cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 000111122344666666666666666666666666555555555555555555554444444555555554442
Q ss_pred hcCChhhHHHHHHHHHhCCCCCC
Q 000837 922 MEGGVPWALNLKELMLGQNKSHN 944 (1262)
Q Consensus 922 ~~g~~~~A~~~~~~~~~~~~~~~ 944 (1262)
+. .++|..+|++|...|+.|+
T Consensus 894 ~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred cC--hHHHHHHHHHHHHcCCCCC
Confidence 11 1334444444444444443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-55 Score=548.20 Aligned_cols=473 Identities=18% Similarity=0.193 Sum_probs=424.4
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC-CCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 000837 248 FLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG-NNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFN 326 (1262)
Q Consensus 248 ~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 326 (1262)
+..+|+.++..|.+.|++++|+++|+.|...+ .. |+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~---~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFT---LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 44567777777777777777777777776544 34 778888888888888888888999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 000837 327 EVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLR 406 (1262)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 406 (1262)
.++.+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999996 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000837 407 SALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMA 486 (1262)
Q Consensus 407 ~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 486 (1262)
.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|.+ +|.++||++|.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999975 599999999999999999999999999999
Q ss_pred HcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHH
Q 000837 487 KSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLI 566 (1262)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li 566 (1262)
+.|.. ||..||+ .++
T Consensus 318 ~~g~~---------------------------------pd~~t~~--------------------------------~ll 332 (697)
T PLN03081 318 DSGVS---------------------------------IDQFTFS--------------------------------IMI 332 (697)
T ss_pred HcCCC---------------------------------CCHHHHH--------------------------------HHH
Confidence 99987 8888866 556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCCh
Q 000837 567 KMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLV 646 (1262)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 646 (1262)
.+|++.|++++|.+++.+|.+.|+.||..+|++|+.+|++.|. +++|.++|++|.+ +|..+||+||.+|++.|+.
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPR----KNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCH
Confidence 7788888888888888889888999999999999999999888 9999999998864 5889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHh-cCCCCCcccHHHHHHHHhhhCchHhHHHHHHH
Q 000837 647 RDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQN-RKWLPGLEDCKSLVECLCHKKLLKESLQLFEC 725 (1262)
Q Consensus 647 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 725 (1262)
++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 58999999999999999999999999999886
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 000837 726 MLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCL 805 (1262)
Q Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 805 (1262)
+ +..|+..+|+.|+.+|+..|+++.|..+++++.+.+ +.+.
T Consensus 488 ~--------------------------------------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~ 528 (697)
T PLN03081 488 A--------------------------------------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKL 528 (697)
T ss_pred C--------------------------------------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCC
Confidence 4 356788899999999999999999999988887543 2246
Q ss_pred hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 000837 806 DVSVSLIPQLFRTGRLEKAVALREISLKEQPL 837 (1262)
Q Consensus 806 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 837 (1262)
.+|..+++.|++.|++++|.++++.|.+.|..
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 78999999999999999999999999888765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.3e-55 Score=541.26 Aligned_cols=561 Identities=15% Similarity=0.197 Sum_probs=433.6
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHhhhhc-CCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHH
Q 000837 595 SVFSALVKGLCASRSHIKACTGLLEKMPKLA-NKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLM 673 (1262)
Q Consensus 595 ~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 673 (1262)
.+|+.+|.++.+.+. +++|.++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..|...|+.||..+|+.++.
T Consensus 88 ~~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGR-HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 344444444444444 444444444444332 334555555555555555666666666666666666666666666666
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCccc
Q 000837 674 SLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSN 753 (1262)
Q Consensus 674 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 753 (1262)
.|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-------------------------- 216 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMW-------------------------- 216 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH--------------------------
Confidence 66666666666666666543 566666666666666666666655555543
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhh
Q 000837 754 AHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLK 833 (1262)
Q Consensus 754 a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 833 (1262)
+.|..|+..+|+.++.++++.|..+.+.+++..+.+.|..||..+++.|+++|++.|++++|.++|+.|..
T Consensus 217 ---------~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 287 (697)
T PLN03081 217 ---------EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287 (697)
T ss_pred ---------HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 45566777888888888888888888888888888889999999999999999999999999999999864
Q ss_pred cCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhH
Q 000837 834 EQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSY 913 (1262)
Q Consensus 834 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 913 (1262)
+|+.+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..++
T Consensus 288 ----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 288 ----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcC
Q 000837 914 RNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKH 993 (1262)
Q Consensus 914 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 993 (1262)
+.|+++|+++|++++|.++|+.|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999865 699999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHH-CCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000837 994 KDVSSSKYYIAAMVS-KGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHF 1072 (1262)
Q Consensus 994 g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 1072 (1262)
|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999987 699999999999999999999999999998876 5789999999999999999999999999
Q ss_pred HHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHcc-----cCC---------hhHH
Q 000837 1073 LDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSS-SYDSIIST-----CNK---------LDPA 1136 (1262)
Q Consensus 1073 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~-----~g~---------~~~A 1136 (1262)
++++.+ +.|+ ..+|..|+..|++.|++++|.+++++|.+.|+....- +|..+-.. .|+ ++..
T Consensus 517 ~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l 594 (697)
T PLN03081 517 AEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL 594 (697)
T ss_pred HHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHH
Confidence 999976 5564 6799999999999999999999999999998754322 22211110 221 3445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHH----HHHCCC--CCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1137 MDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAE---RLLIS----MVQLGD--TPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1137 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~---~l~~~----~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
.++..+|.+.|..|+..... .+.++-. .+... ++..|+ .|... -..+.+.++..||...|.
T Consensus 595 ~~l~~~~~~~gy~~~~~~~~---------~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~-~i~i~knlr~c~dch~~~ 664 (697)
T PLN03081 595 DELMKEISEYGYVAEENELL---------PDVDEDEEKVSGRYHSEKLAIAFGLINTSEWT-PLQITQSHRICKDCHKVI 664 (697)
T ss_pred HHHHHHHHHcCCCCCcchhh---------ccccHHHHHHHHHhccHHHHHHhhCccCCCCC-eEEEecCCEECCCchhhH
Confidence 56677777788888743221 1111111 00110 111111 11111 133556667778888888
Q ss_pred HHHHHHHHcCC
Q 000837 1208 ELMQAMQQSGY 1218 (1262)
Q Consensus 1208 ~~~~~~~~~~~ 1218 (1262)
++.-++..+.+
T Consensus 665 k~~s~~~~r~i 675 (697)
T PLN03081 665 KFIALVTKREI 675 (697)
T ss_pred HHHhhhcceEE
Confidence 88877766543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.7e-47 Score=496.51 Aligned_cols=870 Identities=13% Similarity=0.056 Sum_probs=414.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFI 256 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 256 (1262)
++..+...+..+...|++++|...+.+..+.. |.++..+..++..|...|++++|...|+++.+.++. +...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a 97 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKD--PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLA 97 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHH
Confidence 44455555555555555555555555555443 445555555555555555555555555555555432 333444445
Q ss_pred HHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 000837 257 NHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKK 336 (1262)
Q Consensus 257 ~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 336 (1262)
..+...|++++|...+.+. .....+.....+..+...|...|
T Consensus 98 ~~~~~~g~~~~a~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 98 RAYLLQGKFQQVLDELPGK--------------------------------------TLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHCCCHHHHHHhhccc--------------------------------------ccCCchhhHHHHHHHHHHHHHcC
Confidence 5555555555555555433 21111223333444444444444
Q ss_pred CHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 000837 337 DFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSE 414 (1262)
Q Consensus 337 ~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 414 (1262)
++++|...|+++ ..+.+...+..+...+...|++++|.++++++.+.. +++...+..+...+...|++++|...|++
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 218 (899)
T TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRK 218 (899)
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 444444444444 112223344444444455555555555555444432 23344444444455555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccC
Q 000837 415 ILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELS 494 (1262)
Q Consensus 415 m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 494 (1262)
..+..+ .+..++..++..+...|++++|...++.+.+.... +...+......+...|++++|...++++.+.++.
T Consensus 219 a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--- 293 (899)
T TIGR02917 219 AIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE--- 293 (899)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---
Confidence 544432 23444444455555555555555555555443221 1122222222333445555555555555443321
Q ss_pred ccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhc
Q 000837 495 SLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHAR 572 (1262)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~ 572 (1262)
....+..++..+...|++++|...+.+.....+... +..++..+...
T Consensus 294 -------------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 342 (899)
T TIGR02917 294 -------------------------------YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342 (899)
T ss_pred -------------------------------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 111111222222233333333333333322222111 23344444555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHH
Q 000837 573 GNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKI 652 (1262)
Q Consensus 573 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 652 (1262)
|++++|...++++.+... . +...+..+...+.+.|++++|.++
T Consensus 343 g~~~~A~~~~~~~~~~~~-~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~ 385 (899)
T TIGR02917 343 GRVDEAIATLSPALGLDP-D------------------------------------DPAALSLLGEAYLALGDFEKAAEY 385 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-C------------------------------------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555443221 1 333344444444444444444444
Q ss_pred HHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCC
Q 000837 653 FDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPC 732 (1262)
Q Consensus 653 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 732 (1262)
|+++.+..+. +...+..+...+...|++++|...+..+..... ........++..+.+.|++++|.++++.+....|.
T Consensus 386 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 463 (899)
T TIGR02917 386 LAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463 (899)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 4444443222 333344444444444444444444444443320 11222333344444445555555555444433222
Q ss_pred CChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHH
Q 000837 733 LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLI 812 (1262)
Q Consensus 733 ~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 812 (1262)
+...+..+...+...|++++|...|+++.+.. +.+...+..++
T Consensus 464 ------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 506 (899)
T TIGR02917 464 ------------------------------------NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLA 506 (899)
T ss_pred ------------------------------------CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Confidence 23333334444444444444444444443322 11222333344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 000837 813 PQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLR 892 (1262)
Q Consensus 813 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~ 892 (1262)
..+...|++++|.+.++.+....+. +..++..+...+.+.|+.++|...++++...+. .+...+..+...+...|+++
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHH
Confidence 4444444444444444444433322 333344444444444444444444444443221 12233344444444444444
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 893 KVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQ 972 (1262)
Q Consensus 893 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 972 (1262)
+|..+++.+.+.. +.+...+..++..+.+.|++++|+..|+.+.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444332 2233444444444444455555554444444332 1133344455555555555555555555554
Q ss_pred HCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 000837 973 ENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIV 1052 (1262)
Q Consensus 973 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 1052 (1262)
+.. +.+..++..+...+...|++++|..+++.+.+.+ .++...+..+..++...|++++|.+.++.+.+.+ |+..+
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 738 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQN 738 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchH
Confidence 431 1234445555555555555555555555555432 2233444444555555555555555555555432 33344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---
Q 000837 1053 QNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST--- 1129 (1262)
Q Consensus 1053 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--- 1129 (1262)
+..++..+...|++++|...++++.+.. +.+...+..++..|...|++++|.+.|+++.+.. +++...+..+...
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 4455555555555555555555555431 1234455555555555555555555555555542 2222222222222
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|+ .+|+++++++.+ ..| ++..+..++.++.+.|++++|...++++++.+ +.++.++..++.++...|++++|.+
T Consensus 817 ~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 817 LKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred cCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 444 555566665554 334 55677889999999999999999999999875 4489999999999999999999999
Q ss_pred HHHHHH
Q 000837 1209 LMQAMQ 1214 (1262)
Q Consensus 1209 ~~~~~~ 1214 (1262)
++++|+
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 999886
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-46 Score=492.71 Aligned_cols=862 Identities=13% Similarity=0.047 Sum_probs=605.2
Q ss_pred cchhhHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh
Q 000837 152 FRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVE 231 (1262)
Q Consensus 152 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 231 (1262)
...++++.|+..|+.+....| .+++++..++.++.+.|++++|...+.++.+.+ +++......+...|...|+++
T Consensus 33 ~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~ 107 (899)
T TIGR02917 33 LQKNKYKAAIIQLKNALQKDP---NDAEARFLLGKIYLALGDYAAAEKELRKALSLG--YPKNQVLPLLARAYLLQGKFQ 107 (899)
T ss_pred HHcCChHhHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhHHHHHHHHHHCCCHH
Confidence 346788999999999886644 488999999999999999999999999999877 446677888999999999999
Q ss_pred HHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 000837 232 RAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVR 311 (1262)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (1262)
+|+..+..............+..+...+...|++++|...|+++++..+. +...+..+...+...|++++|..+++
T Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR----SLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999988764445557788999999999999999999999999987754 56678889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCH
Q 000837 312 KAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDE 389 (1262)
Q Consensus 312 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 389 (1262)
++.+.. +++...+..+...+...|++++|...|++. ..+.+..++..++..+...|++++|...++.+.+.... +.
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 261 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SP 261 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Cc
Confidence 998864 667888888999999999999999999998 44556778899999999999999999999999886532 33
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 000837 390 ITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGY 469 (1262)
Q Consensus 390 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 469 (1262)
..+......+...|++++|...|.++.+.+.. +...+..+...+...|++++|...|+...+.. +.+...+..+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 339 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQ 339 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34444455567889999999999999887533 23444555667888999999999999998764 23566778888899
Q ss_pred HHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHH
Q 000837 470 CKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERK 549 (1262)
Q Consensus 470 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 549 (1262)
.+.|++++|...++++.+... .+...+..++..+...|++++|...
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 385 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLDP----------------------------------DDPAALSLLGEAYLALGDFEKAAEY 385 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCC----------------------------------CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999887654 4456667777777777777777777
Q ss_pred HHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCC
Q 000837 550 LSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANK 627 (1262)
Q Consensus 550 l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~ 627 (1262)
++++....+... +..+...+...|++++|+..++++.+.... .......++..+...++ +++|..+++.+....+
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~- 462 (899)
T TIGR02917 386 LAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQ-FDKALAAAKKLEKKQP- 462 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCC-HHHHHHHHHHHHHhCC-
Confidence 777766554333 666667777777777777777777654322 12233344455555555 6666666665554322
Q ss_pred CChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHH
Q 000837 628 LDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLV 707 (1262)
Q Consensus 628 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 707 (1262)
.+..+++.+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.++.+.... +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 24455555566666666666666666665554332 34445555555555666666666665555432 12344455555
Q ss_pred HHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 000837 708 ECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFS 787 (1262)
Q Consensus 708 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~ 787 (1262)
..+.+.|+.++|...++++...+|. +...+..++..+...|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQ------------------------------------EIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc------------------------------------chhHHHHHHHHHHHCCCHH
Confidence 5555555555555555555443332 4455566666777777777
Q ss_pred HHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 000837 788 VAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDML 867 (1262)
Q Consensus 788 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 867 (1262)
+|..+++.+.+.. +.+..++..++..+...|++++|+..++.+.+..+. +...+..+...+.+.|++++|...|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766543 334566666777777777777777777776655443 44556666677777777777777777766
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcch
Q 000837 868 SQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLII 947 (1262)
Q Consensus 868 ~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 947 (1262)
+... .+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|...|+.+.... |+..+
T Consensus 663 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 738 (899)
T TIGR02917 663 ELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQN 738 (899)
T ss_pred hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchH
Confidence 6332 245566666667777777777777777766654 2345556666666677777777777777666653 23355
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHh
Q 000837 948 FNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCE 1027 (1262)
Q Consensus 948 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 1027 (1262)
+..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+++.+.. +++...+..+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 5566667777777777777777766642 2355666666667777777777777777777643 3345566666667777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 000837 1028 VGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDL 1107 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1107 (1262)
.|+ ++|+.+++++.+.. +.+..++..++..+...|++++|...|+++++.+.. +..++..++.++.+.|++++|.++
T Consensus 817 ~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred cCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 777 66777777766642 224556666777777777777777777777765433 566777777777777777777777
Q ss_pred HHHHH
Q 000837 1108 LNIML 1112 (1262)
Q Consensus 1108 ~~~~~ 1112 (1262)
+++|+
T Consensus 894 ~~~~~ 898 (899)
T TIGR02917 894 LDKLL 898 (899)
T ss_pred HHHHh
Confidence 77664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.6e-24 Score=282.73 Aligned_cols=424 Identities=13% Similarity=0.052 Sum_probs=204.1
Q ss_pred HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcc---cH-----------
Q 000837 638 QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLE---DC----------- 703 (1262)
Q Consensus 638 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~----------- 703 (1262)
..+...|++++|+..|++.++..+. +...+..+...+.+.|++++|+..|++..+.. |+.. .+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHH
Confidence 4455666777777777766665443 56666666666667777777777776666543 2211 11
Q ss_pred -HHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 000837 704 -KSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCK 782 (1262)
Q Consensus 704 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~ 782 (1262)
......+.+.|++++|++.|+++++..|. +...+..+...+..
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~------------------------------------~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNT------------------------------------DSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------------------------------CHHHHHHHHHHHHH
Confidence 11233455667777777777776665554 44455555666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC--------chHHhHHHHHHHHhhcC
Q 000837 783 EKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPL--------LLFSFHSAFISGFCVTG 854 (1262)
Q Consensus 783 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g 854 (1262)
.|++++|++.|+++.+... .+...+..+...+. .++.++|+.+++.+...... .....+..+...+...|
T Consensus 398 ~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 6666666666666655421 12333444444442 34556666555543322100 00112334445555666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHH
Q 000837 855 KAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKE 934 (1262)
Q Consensus 855 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 934 (1262)
++++|++.|++.++.... +...+..+...|.+.|++++|...++.+++.... +...+..+...+.+.++.++|+..++
T Consensus 476 ~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 476 KWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666666653221 3344555555666666666666666666554321 23333333334445566666666555
Q ss_pred HHHhCCCCCCcc---------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHH
Q 000837 935 LMLGQNKSHNLI---------IFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAA 1005 (1262)
Q Consensus 935 ~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 1005 (1262)
.+......++.. .+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|++
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 543221111100 011223334444555555544441 112223334444444445555555555555
Q ss_pred HHHCCCCC-ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C
Q 000837 1006 MVSKGFNP-SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDL--V 1082 (1262)
Q Consensus 1006 m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~ 1082 (1262)
+++. .| +...+..++.+|...|++++|++.++.+.+.. +.+..++..+..++...|++++|.+++++++.... .
T Consensus 629 al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 629 VLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 4442 22 23334444444444555555555555444321 11233344444444445555555555554443211 1
Q ss_pred C---CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1083 P---DTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1083 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
| +...+..+...+...|++++|++.|++.+
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11233333444444455555555544443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.9e-24 Score=282.00 Aligned_cols=679 Identities=12% Similarity=0.018 Sum_probs=313.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhH-----
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCY----- 252 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----- 252 (1262)
.+.....+++....++.+.|.+.+.++.... |+++.++..++..+...|+.++|...+++..+..+. +...+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~ 104 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 3445566677778899999999999887664 778999999999999999999999999999987643 22222
Q ss_pred -----------HHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 000837 253 -----------RVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKD-SFHDVVRLLCRDRKIQESRNLVRKAMAFGLEP 320 (1262)
Q Consensus 253 -----------~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 320 (1262)
..+...+.+.|++++|+..|+++++..+. +.. ............|+.++|+..++++.+.. +.
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~----~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~ 179 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP----ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PG 179 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC----ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CC
Confidence 12222344455555555555555443321 110 01011111112344555555555544432 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCH-HhHHHHHHHH
Q 000837 321 SSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDE-ITFGILIGWT 399 (1262)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~ 399 (1262)
+...+..+...+...|+.++|+..++++...|.. +...+...++.+...+..|+. ..+...+..+
T Consensus 180 ~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~--------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~ 245 (1157)
T PRK11447 180 NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG--------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVF 245 (1157)
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc--------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHC
Confidence 3444444444444445555555554444111100 001111111222221211111 1122222222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHH
Q 000837 400 CREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAK 479 (1262)
Q Consensus 400 ~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 479 (1262)
-....++.|...+.++......|+... ......+...|++++|...|++..+... .+...+..+...|.+.|++++|.
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~ 323 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAV 323 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 222233444444444433322232211 1222334445555555555555554321 13444555555555555555555
Q ss_pred HHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCC
Q 000837 480 IMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMI 559 (1262)
Q Consensus 480 ~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 559 (1262)
..|++..+..+.. +....+..++.. . ...
T Consensus 324 ~~l~~Al~~~p~~--------------------------------~~~~~~~~ll~~----~------~~~--------- 352 (1157)
T PRK11447 324 AQFEKALALDPHS--------------------------------SNRDKWESLLKV----N------RYW--------- 352 (1157)
T ss_pred HHHHHHHHhCCCc--------------------------------cchhHHHHHHHh----h------hHH---------
Confidence 5555554433210 000001000000 0 000
Q ss_pred CChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHH
Q 000837 560 PNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQA 639 (1262)
Q Consensus 560 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~ 639 (1262)
........+.+.|++++|+..|+++++ ..+. +...+..+...
T Consensus 353 -~~~~~g~~~~~~g~~~eA~~~~~~Al~------------------------------------~~P~-~~~a~~~Lg~~ 394 (1157)
T PRK11447 353 -LLIQQGDAALKANNLAQAERLYQQARQ------------------------------------VDNT-DSYAVLGLGDV 394 (1157)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------hCCC-CHHHHHHHHHH
Confidence 000122334445555555555555544 2211 33444445555
Q ss_pred HHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC--------CCcccHHHHHHHHh
Q 000837 640 CCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWL--------PGLEDCKSLVECLC 711 (1262)
Q Consensus 640 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~li~~~~ 711 (1262)
+...|++++|++.|+++.+..+. +...+..+...+. .++.++|..+++.+...... -....+..+...+.
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55566666666666665554332 3344444444442 33455555555443221100 00112333444555
Q ss_pred hhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 000837 712 HKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFK 791 (1262)
Q Consensus 712 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~ 791 (1262)
..|++++|++.|+++++..|. +...+..+...|.+.|++++|..
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~------------------------------------~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPG------------------------------------SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCC------------------------------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666666666555554 44445555555666666666666
Q ss_pred HHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 000837 792 MLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGM 871 (1262)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 871 (1262)
.++++.+... .+...+..+...+...++.++|+..++.+......++..... ..+
T Consensus 517 ~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~-------------------~~l----- 571 (1157)
T PRK11447 517 LMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA-------------------QRL----- 571 (1157)
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH-------------------HHH-----
Confidence 6666554321 122333333334445556666666555543221111110000 000
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHH
Q 000837 872 LLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNIL 951 (1262)
Q Consensus 872 ~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 951 (1262)
....+......+...|+.++|.++++. .+.+...+..+...+.+.|++++|+..|+.+.+.. +.+...+..+
T Consensus 572 --~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~l 643 (1157)
T PRK11447 572 --QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGL 643 (1157)
T ss_pred --hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 000111233344455555555555441 12233444455555555566666666555555542 1244555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCC--CC---ChhcHHHHHHHH
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLP-DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGF--NP---SNRSLRSVISCL 1025 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~li~~~ 1025 (1262)
+..|...|++++|.+.++...+. .| +..++..+..++...|++++|.+++++++.... .| +...+..+...+
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~ 721 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE 721 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH
Confidence 66666666666666666655443 22 223344445555556666666666666555311 11 112333345555
Q ss_pred HhcCChhHHHHHHHHHH
Q 000837 1026 CEVGELGKSLELSQEMR 1042 (1262)
Q Consensus 1026 ~~~g~~~~A~~~~~~~~ 1042 (1262)
...|++++|++.|+...
T Consensus 722 ~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 722 AQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 56666666666666554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.3e-21 Score=241.66 Aligned_cols=683 Identities=12% Similarity=0.037 Sum_probs=454.8
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhcc
Q 000837 462 YRILLAGYC--KARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYL 539 (1262)
Q Consensus 462 ~~~li~~~~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 539 (1262)
+..++.++. ..|++++|+..|++..+..+ .+..++..+...+..
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP----------------------------------~n~~~~~~LA~~yl~ 90 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVP----------------------------------DNIPLTLYLAEAYRH 90 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------CCHHHHHHHHHHHHH
Confidence 334444432 33999999999999998876 346777888899999
Q ss_pred CCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhCCCc
Q 000837 540 DTDLDEYERKLSKIIEDSMIPN-FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKG--------LCASRSH 610 (1262)
Q Consensus 540 ~~~~~~a~~~l~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--------~~~~~~~ 610 (1262)
.|+.++|...+++.+...+... +..++ ...+++++|..+++++....+. +..++..+... |.+
T Consensus 91 ~g~~~~A~~~~~kAv~ldP~n~~~~~~L---a~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q---- 162 (987)
T PRK09782 91 FGHDDRARLLLEDQLKRHPGDARLERSL---AAIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQ---- 162 (987)
T ss_pred CCCHHHHHHHHHHHHhcCcccHHHHHHH---HHhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhh----
Confidence 9999999999999999888655 33333 2228889999999999885332 23333333333 333
Q ss_pred hHHHHHHHHHhhhhcCCCChHHHHHH-HHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHh-cCCHhhHHHHH
Q 000837 611 IKACTGLLEKMPKLANKLDQESLNLL-IQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCK-KGFIKDLHAFW 688 (1262)
Q Consensus 611 ~~~a~~l~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~ 688 (1262)
.++|.+.++ .....+.|+..+.... ...|.+.|++++|++++.++.+.++. +......|...|.. .++ +.+..++
T Consensus 163 ~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~ 239 (987)
T PRK09782 163 LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQ 239 (987)
T ss_pred HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHh
Confidence 466666666 4444455555555555 88999999999999999999998765 56667777777777 366 7777775
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHhcCCcc-cHHH-HHHHHHhcC
Q 000837 689 DIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPC-LRSDICYIFLEKLCVTGFSS-NAHA-LVEELLQQG 765 (1262)
Q Consensus 689 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~-~a~~-~l~~~~~~g 765 (1262)
+. ....+...+..+...|.+.|+.++|.+.++++....+. +....+... +.+.+... .|.. +.+++...
T Consensus 240 ~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~~~~~~- 311 (987)
T PRK09782 240 SQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTVQFADN- 311 (987)
T ss_pred ch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhhhhHHH-
Confidence 43 23357788889999999999999999999887765444 333333333 33333221 0111 11111110
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHH--HhcCCHHHHHHHHHHHhhcCCCchHHhH
Q 000837 766 CNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQL--FRTGRLEKAVALREISLKEQPLLLFSFH 843 (1262)
Q Consensus 766 ~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 843 (1262)
-......++..+.+.++++-++++.. ..|..... ..... ...+...++.+.+..+....+. +....
T Consensus 312 ---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l 379 (987)
T PRK09782 312 ---RQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--EERYAVSVATRNKAEALRLARLLYQQEPA-NLTRL 379 (987)
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHH
Confidence 11122334677778888886665522 23333322 22222 2346677777777777665333 33334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHC-C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHH
Q 000837 844 SAFISGFCVTGKAEEASKLFRDMLSQ-G-MLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMC 921 (1262)
Q Consensus 844 ~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 921 (1262)
--+.....+.|+.++|.++|+..... + ..++.....-++..|.+.+.+....++..-. ..++...-. .
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~------~ 449 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS----KPLPLAEQR------Q 449 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc----cccccchhH------H
Confidence 44445566788889999988888762 1 2223334457777777776633333222211 111111111 1
Q ss_pred hcCChhhHHHHHHHHHhCC--CCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChh
Q 000837 922 MEGGVPWALNLKELMLGQN--KSH--NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVS 997 (1262)
Q Consensus 922 ~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 997 (1262)
-.|+..++...++.+...- .++ +...|..+..++.. +++.+|+..+.+.... .|+......+...+...|+++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHH
Confidence 1233333333333222211 123 56678888888876 8888899988887765 466555444555567899999
Q ss_pred HHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 998 SSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 998 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
+|...|+++... .|+...+..+..++.+.|+.++|...++...+.. ++....+..+...+...|++++|+..+++.+
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999998663 4444556667778889999999999999998863 2234444444455556699999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCC-CH
Q 000837 1078 DKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKP-SM 1152 (1262)
Q Consensus 1078 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p-~~ 1152 (1262)
+ ..|+...|..+..++.+.|++++|++.+++.++. .|+...+...+.. .|++++|++.+++..+ +.| ++
T Consensus 604 ~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~ 677 (987)
T PRK09782 604 N--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDP 677 (987)
T ss_pred H--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH
Confidence 8 4677888999999999999999999999999986 5665544333332 8999999999999987 667 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISN 1231 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 1231 (1262)
..+..++.++...|++++|+..++++++. .|+ ..+....++......+++.|.+.+++... +.|+.. ...-++.
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~-a~~~~g~ 752 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS-IGLRSGA 752 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch-hccccch
Confidence 88999999999999999999999999985 454 57777889999999999999999999887 566655 4444444
Q ss_pred hhccc
Q 000837 1232 LRNSN 1236 (1262)
Q Consensus 1232 l~~~~ 1236 (1262)
++...
T Consensus 753 ~~~~~ 757 (987)
T PRK09782 753 MSTAN 757 (987)
T ss_pred Hhhhc
Confidence 44433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=6.2e-21 Score=235.84 Aligned_cols=680 Identities=11% Similarity=-0.022 Sum_probs=369.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHH
Q 000837 401 REGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKI 480 (1262)
Q Consensus 401 ~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 480 (1262)
..|++++|+..|+..++..+. +...+..|...|.+.|+.++|...+++..+.. |+...|..++..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHH
Confidence 349999999999999888655 47888889999999999999999999998863 5544444444333 88899999
Q ss_pred HHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhh-----ccCCCHHHHHHHHHHHhh
Q 000837 481 MVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGL-----YLDTDLDEYERKLSKIIE 555 (1262)
Q Consensus 481 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~l~~~~~ 555 (1262)
+++++.+..+ .+...+..+.... ....+.++|.+.++ ...
T Consensus 130 ~ye~l~~~~P----------------------------------~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~ 174 (987)
T PRK09782 130 TVEELLAQQK----------------------------------ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DAT 174 (987)
T ss_pred HHHHHHHhCC----------------------------------CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-Hhh
Confidence 9999998875 3345555444440 11233355555555 333
Q ss_pred cCCCCC----hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChH
Q 000837 556 DSMIPN----FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQE 631 (1262)
Q Consensus 556 ~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 631 (1262)
..+.|. .......|.+.|++++|+..+.++.+.++. +......|-..|...-+. +++..+++. ....+..
T Consensus 175 ~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~ 248 (987)
T PRK09782 175 FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQ 248 (987)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHH
Confidence 334333 334478899999999999999999987644 344456666666663221 666666443 2234888
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHhhcCCC-CCHhhHHHHHHHHHhcCCHh-hHHHHHHHHHhcCCCCC-cccHHHHHH
Q 000837 632 SLNLLIQACCKKGLVRDGKKIFDGMLQRGLT-IENESYTTLLMSLCKKGFIK-DLHAFWDIAQNRKWLPG-LEDCKSLVE 708 (1262)
Q Consensus 632 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~-~~~~~~li~ 708 (1262)
.+..+...|.+.|+.++|.++++++...... |...+|..+ +.+.+... .|..-|.. ...++ ......++.
T Consensus 249 l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 249 SRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHH
Confidence 8899999999999999999999988655333 455555444 34444432 11111111 01111 112233466
Q ss_pred HHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 000837 709 CLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSV 788 (1262)
Q Consensus 709 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~ 788 (1262)
.+.+.+.++.+.++. ...|... .. ..+... ....+...+
T Consensus 322 ~~~~~~~~~~~~~~~----~~~~~~~--~~--~~r~~~---------------------------------~~~~~~~~~ 360 (987)
T PRK09782 322 VLLKEGQYDAAQKLL----ATLPANE--ML--EERYAV---------------------------------SVATRNKAE 360 (987)
T ss_pred HHHhccHHHHHHHHh----cCCCcch--HH--HHHHhh---------------------------------ccccCchhH
Confidence 677777777555442 2222211 11 111111 111233344
Q ss_pred HHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC--CCchHHhHHHHHHHHhhcCCHHHHHHHHHHH
Q 000837 789 AFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ--PLLLFSFHSAFISGFCVTGKAEEASKLFRDM 866 (1262)
Q Consensus 789 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 866 (1262)
+...+..|.... +-+......+.....+.|+.++|..+|+...... ...+.....-++..|.+.+......++..-.
T Consensus 361 ~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 361 ALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 444444443321 1133333333444445555555555555543310 1112222334444444444422111111110
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-cc--ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 000837 867 LSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRK-RL-SL--SISSYRNLVRWMCMEGGVPWALNLKELMLGQNKS 942 (1262)
Q Consensus 867 ~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 942 (1262)
..++...- +.-.|+..++.......... +. ++ +...+..+..++.. ++.++|+..+.......
T Consensus 440 ----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 440 ----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred ----cccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 00111111 11122222222222222211 01 12 33444444444444 45555555555444432
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCCh-hcHHHH
Q 000837 943 HNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSV 1021 (1262)
Q Consensus 943 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 1021 (1262)
|+......+...+...|++++|...|+++... .|+...+..+...+.+.|++++|...+++.++.. |+. ..+..+
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~L 582 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWL 582 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHH
Confidence 22222222233334566666666666665443 2333344455555666666666666666666532 322 122222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCC
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGR 1100 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 1100 (1262)
...+.+.|++++|+..+++..+. .|+...+..+..++.+.|++++|+..|++.++. .|+ ...++.+..++...|+
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 22333446677777776666653 345666666666667777777777777776663 343 5566666666666777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 000837 1101 LDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQEGRTTEAERLL 1175 (1262)
Q Consensus 1101 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~l~ 1175 (1262)
.++|++.+++.++. .|+......-+.. .|++++|...+++..+ +.|+ ..+....+....+..+++.|.+-+
T Consensus 659 ~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 659 IAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 77777777666664 3433322111111 6677777777777765 5563 356667777777777888888877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 000837 1176 ISMVQLGDTPTQEMYSSVVNRYSLENNL 1203 (1262)
Q Consensus 1176 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 1203 (1262)
++... +.|+..+....+.++...+++
T Consensus 735 ~r~~~--~~~~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 735 GRRWT--FSFDSSIGLRSGAMSTANNNV 760 (987)
T ss_pred HHHhh--cCccchhccccchHhhhcccc
Confidence 77766 456555666666666666554
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-19 Score=207.33 Aligned_cols=573 Identities=13% Similarity=0.091 Sum_probs=365.3
Q ss_pred hHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHH
Q 000837 611 IKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDI 690 (1262)
Q Consensus 611 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 690 (1262)
++.|.+.|..+....+. +.-.+-.=.......|++..|+.+|..++...+.--+...-.+..++.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 45555555555554332 22222222222345566666666666654432221112222233455566666666666666
Q ss_pred HHhcCCCC-CcccHHHHHHHH---hhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCC
Q 000837 691 AQNRKWLP-GLEDCKSLVECL---CHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGC 766 (1262)
Q Consensus 691 m~~~~~~p-~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~ 766 (1262)
..+.+ | ++.++..|...- .....+..+++++..+-..++.
T Consensus 225 alqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~---------------------------------- 268 (1018)
T KOG2002|consen 225 ALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE---------------------------------- 268 (1018)
T ss_pred HHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC----------------------------------
Confidence 66533 3 111111111111 1112233344444443333332
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHH
Q 000837 767 NLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMA--PCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHS 844 (1262)
Q Consensus 767 ~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 844 (1262)
++...+.|...|.-.|+++.+..+...+...... .-...|..+.++|-..|++++|...|.+.....+...+..+-
T Consensus 269 --nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 --NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred --CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 5566677777777777777777777776654211 112346667777777777777777777766654443244445
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCccChhhHHHHHHHH
Q 000837 845 AFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEAN----NLRKVRELLSAMIRKRLSLSISSYRNLVRWM 920 (1262)
Q Consensus 845 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 920 (1262)
-+...|.+.|+.+.+...|+....... .+..|...+...|...+ ..++|..++....+.- ..+...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 566777777888888877777776331 13445555655565553 4456666666655543 23455555555554
Q ss_pred HhcCChhhHHHHHHHH----HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHh------hHHHHH
Q 000837 921 CMEGGVPWALNLKELM----LGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQEN---ELLPDEV------TYNFLI 987 (1262)
Q Consensus 921 ~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~------~~~~li 987 (1262)
.. ++.-.++..|..+ ...+..+.+...|.+.......|+++.|...|...... ...+|.. +-..+.
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 43 3333335555433 34455567788899999999999999999999887765 2233332 222334
Q ss_pred HHhhcCCChhHHHHHHHHHHHCCCCCChhcHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 000837 988 YGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLR-SVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 988 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 1066 (1262)
...-..++.+.|.+.|..+++. .|...... .++......+...+|...+.++.+. -..++..+..+.+.+.+..++
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhh
Confidence 4555667999999999999984 45543322 2222223347888999999999875 345788899999999999999
Q ss_pred HHHHHHHHHHHhC-CCCCCHhHHHHHHHHHH------------hcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHcc
Q 000837 1067 QEAEHFLDQIVDK-DLVPDTINYDNLIKRFC------------GYGRLDKAVDLLNIMLKKGSTPNSSSYDS----IIST 1129 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----ll~~ 1129 (1262)
..|..-|+...++ ...+|+.+...|.+.|. ..+..++|+++|.+.++. .|......- ++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhh
Confidence 9999988777654 23367777777777663 345678899999988875 455544322 2223
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL-GDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
+|++.+|.++|.++.+. ......+|-+++++|..+|++-.|+++|+...+. ....++.+...|++++...|++.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa-~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREA-TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHH-HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999984 3345678999999999999999999999999864 234468899999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhh
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~~l~ 1233 (1262)
.+.++.. ..|.+.+....++-+.
T Consensus 738 ~ll~a~~--~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 738 ALLKARH--LAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHH--hCCccchHHhHHHHHH
Confidence 9999988 7898887665555443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.4e-18 Score=198.66 Aligned_cols=421 Identities=14% Similarity=0.081 Sum_probs=233.7
Q ss_pred HhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000837 531 DNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARG----NLKAALLLVDEMVRWGQELSLSVFSALVKGL 604 (1262)
Q Consensus 531 ~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 604 (1262)
.-++..+...|+++.+...|+++....+... ...|...|...+ ..+.|..++.+..+.- ..|...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 3444555555555555555555555444333 222222233222 3455555555554432 12333443333333
Q ss_pred HhCCCchHHHHHHHHHh----hhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhc---CCCCCH------hhHHHH
Q 000837 605 CASRSHIKACTGLLEKM----PKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQR---GLTIEN------ESYTTL 671 (1262)
Q Consensus 605 ~~~~~~~~~a~~l~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~------~~~~~l 671 (1262)
.... ...+...+..+ ...+..+..+..|.+...+...|.++.|...|...... ...++. .+--.+
T Consensus 425 e~~d--~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 425 EQTD--PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HhcC--hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 2222 11223333322 22333456777788888888888888888888777654 122222 122233
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCc-ccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 000837 672 LMSLCKKGFIKDLHAFWDIAQNRKWLPGL-EDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGF 750 (1262)
Q Consensus 672 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 750 (1262)
..++-..++++.|.+.|..++... |+- ..|..+.......+...+|...+..++..+.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~------------------- 561 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS------------------- 561 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-------------------
Confidence 444445556666666666665542 321 2222222222233445555555555443322
Q ss_pred cccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhcHHhHHHHHHh------------
Q 000837 751 SSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKN-MAPCLDVSVSLIPQLFR------------ 817 (1262)
Q Consensus 751 ~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------ 817 (1262)
.++..+..+...+.+...+..|..-|+...+.- ..+|..+...|.+.|..
T Consensus 562 -----------------~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 562 -----------------SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred -----------------CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 245555556667777777777777666665432 22466666666665542
Q ss_pred cCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 000837 818 TGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVREL 897 (1262)
Q Consensus 818 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~ 897 (1262)
.+..++|+++|.+++...|. |..+-|-+.-.++..|++.+|..+|.+..+.... ...+|-.+.++|...|++..|+++
T Consensus 625 kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHH
Confidence 24567788888888777666 6777777777788888888888888888775432 344667778888888888888888
Q ss_pred HHHHHHC-CCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000837 898 LSAMIRK-RLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL 976 (1262)
Q Consensus 898 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 976 (1262)
|+...+. ....+..+..-|..++.+.|.+.+|.+.........+....+.+|..+... ++-...++ ..
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k----------kla~s~lr-~~ 771 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK----------KLAESILR-LE 771 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH----------HHHHHHHh-cc
Confidence 8877766 334566677778888888888888887777766654443444444333221 11111111 11
Q ss_pred CCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCC
Q 000837 977 LPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGF 1011 (1262)
Q Consensus 977 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 1011 (1262)
++ |...+. ...+..+.|.++|..+...+-
T Consensus 772 k~---t~eev~---~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 772 KR---TLEEVL---EAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred cc---cHHHHH---HHHHHHHHHHHHHHHHHhcCC
Confidence 11 222221 223457889999999988543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.5e-21 Score=203.95 Aligned_cols=446 Identities=16% Similarity=0.158 Sum_probs=355.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhh
Q 000837 773 YSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCV 852 (1262)
Q Consensus 773 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 852 (1262)
...|.+-..+.|++++|++.-...-..+ +.+....-.+-..+....+.+....--....+..+. -..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHH
Confidence 4456666778899999988766655443 223334444455666666676665554444444433 56678889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhH-HHHHHHHHhcCChhhHH
Q 000837 853 TGKAEEASKLFRDMLSQGMLL-EDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSY-RNLVRWMCMEGGVPWAL 930 (1262)
Q Consensus 853 ~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~ 930 (1262)
.|+.++|+..++.+.+. +| ....|-.+..++...|+.+.|.+.|.+.++.+ |+.... ..+...+-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhH
Confidence 99999999999999984 44 34578888889999999999999999988863 444433 33455555679999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHhhcCCChhHHHHHHHHHHHC
Q 000837 931 NLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPD-EVTYNFLIYGFSKHKDVSSSKYYIAAMVSK 1009 (1262)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 1009 (1262)
..|.+..+..+ .-.+.|..|...+...|+...|+..|++..+. .|+ ...|..|...|...+.++.|+..|.+...
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~- 280 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN- 280 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-
Confidence 99988887632 24678999999999999999999999998874 455 36788899999999999999999999887
Q ss_pred CCCCC-hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh
Q 000837 1010 GFNPS-NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TI 1086 (1262)
Q Consensus 1010 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 1086 (1262)
..|+ ...+..+...|..+|.+|-|+..++..++. .|+ +..|+.|.+++-..|++.+|...+++.+. +.|+ ..
T Consensus 281 -lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~had 355 (966)
T KOG4626|consen 281 -LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHAD 355 (966)
T ss_pred -cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHH
Confidence 4565 455666777888999999999999999984 666 88999999999999999999999999998 4565 77
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHcccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 000837 1087 NYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS----YDSIISTCNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHK 1161 (1262)
Q Consensus 1087 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~ll~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 1161 (1262)
+.+.|..+|...|..++|..+|....+- .|.... ...++...|++++|+..|++.+. +.|+ .+.|+.++..
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchH
Confidence 8999999999999999999999998884 454332 23333339999999999999996 8895 5789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhccccccc
Q 000837 1162 LCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDN 1240 (1262)
Q Consensus 1162 ~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~ 1240 (1262)
|-..|+.+.|++-+.+++. +.|. ......|+.+|...|+..+|++.|+..+. ++||++..+..+.-+.+---.|.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence 9999999999999999998 5676 67778999999999999999999999999 89999988887777666544444
Q ss_pred c
Q 000837 1241 N 1241 (1262)
Q Consensus 1241 ~ 1241 (1262)
+
T Consensus 508 D 508 (966)
T KOG4626|consen 508 D 508 (966)
T ss_pred c
Confidence 4
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=5.2e-20 Score=198.35 Aligned_cols=407 Identities=13% Similarity=0.114 Sum_probs=323.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCH
Q 000837 777 IRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKA 856 (1262)
Q Consensus 777 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 856 (1262)
-.++.+..+++.....-....+.+ +.-..+|..+.+.+-..|++++|+..++.+.+..++ .+..|..+..++...|+.
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~ 166 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDL 166 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCC
Confidence 344555556666555444444443 234678888889999999999999999999887666 677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHH
Q 000837 857 EEASKLFRDMLSQGMLLEDEVYNM-LIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKEL 935 (1262)
Q Consensus 857 ~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 935 (1262)
+.|.+.|.+.++ +.|+.....+ +...+...|++++|...+.+.++... --...|..|.-.+...|+.-.|++-|++
T Consensus 167 ~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 167 ELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred cccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHH
Confidence 999999999988 5576654433 33444568899999999998888643 2345788888888899999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCC
Q 000837 936 MLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPD-EVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPS 1014 (1262)
Q Consensus 936 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 1014 (1262)
..+.++. -...|-.|...|-..+.+++|+..+.+.... .|+ ...+..+...|...|++|.|+..|++.++. .|+
T Consensus 244 AvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~ 318 (966)
T KOG4626|consen 244 AVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPN 318 (966)
T ss_pred hhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCC
Confidence 8876322 3456888999999999999999999888764 455 456677777788999999999999999984 454
Q ss_pred -hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHH
Q 000837 1015 -NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNL 1091 (1262)
Q Consensus 1015 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 1091 (1262)
...|+.|..++-..|+..+|...+.+.... .|+ ....+.|.++|...|.+++|..+|....+ +.|. ...++.|
T Consensus 319 F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNL 394 (966)
T KOG4626|consen 319 FPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNL 394 (966)
T ss_pred chHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhH
Confidence 568999999999999999999999999885 344 77889999999999999999999999988 6777 6789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 000837 1092 IKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEG 1166 (1262)
Q Consensus 1092 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 1166 (1262)
...|-..|++++|+..|++.+. +.|....-..-+.. .|+.+.|+..|.+.+. ++| -.+..+.|+.+|-..|
T Consensus 395 a~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccC
Confidence 9999999999999999999987 46765432222222 8999999999999986 778 4578899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 000837 1167 RTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNL 1203 (1262)
Q Consensus 1167 ~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 1203 (1262)
+..+|++-++.+++ ++|| +..|..++..+.-..+|
T Consensus 471 ni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 471 NIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred CcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence 99999999999998 5666 66666666655444443
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.86 E-value=3.9e-16 Score=176.10 Aligned_cols=954 Identities=13% Similarity=0.072 Sum_probs=482.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhH
Q 000837 173 GFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCY 252 (1262)
Q Consensus 173 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 252 (1262)
|..++.-+|..++.-++..|+.+.|- +|..|.-+.++ .+..+|+.++.+..++++.+.+- .|.+.+|
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp-v~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP-VREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccc-ccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 33344456666666666666666665 55555544432 24456666666666666655543 4556666
Q ss_pred HHHHHHHHhcCchhHHHHHHHH-HHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 000837 253 RVFINHLVKMKVTHLAFRVCVD-MVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAM-AFGLEPSSLVFNEVAY 330 (1262)
Q Consensus 253 ~~l~~~l~~~~~~~~A~~~~~~-m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~li~ 330 (1262)
..++.+|...|+... ++..++ |.. ++..+...|-...-..++-.+. ..++-||.. .++.
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~---------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLES---------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHH---------------HHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 666666666666554 222222 211 1112222332222222222211 112223333 2333
Q ss_pred HHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHH
Q 000837 331 GYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGF-RPDEITFGILIGWTCREGNLRSAL 409 (1262)
Q Consensus 331 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~ 409 (1262)
-....|-++.+++++..++...-..+.-.+++-..... .-..++. .|.+.+. .|+..+|..++..-...|+++-|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~n--tpvekLl-~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN--TPVEKLL-NMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCC--chHHHHH-HHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 44556667777777776621110001111122211111 1122222 2332222 489999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 000837 410 VFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSG 489 (1262)
Q Consensus 410 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 489 (1262)
.++.+|.+.|+.-+.+-|..|+-+ .++..-+..++..|.+.|+.|+..|+..-+-.+..+|....+.+...-- .|
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~--hg 299 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA--HG 299 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh--hh
Confidence 999999999999999888888877 7888889999999999999999999988777776666533332221110 00
Q ss_pred CcccCccchhhhhHHHhcCCC----------hhhh-hhccccccCCCch-hhHHhhhhhhccCCCHHHHHHHHHHHhhcC
Q 000837 490 LIELSSLEDPLSKGFMILGLN----------PSAV-RLRRDNDMGFSKV-EFFDNLGNGLYLDTDLDEYERKLSKIIEDS 557 (1262)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~ 557 (1262)
....+..+ ...|.. ...+ .+++..-.+..-. ..|...... .-.|+-++..++...+....
T Consensus 300 ------~tAavrsa-a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 300 ------FTAAVRSA-ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred ------hhHHHHHH-HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCc
Confidence 00111111 111100 0000 0111111111111 222222222 22455555555555544322
Q ss_pred CC--CC----hHHHHHHHHhcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHh----hhhc
Q 000837 558 MI--PN----FNSLIKMVHARGNLKAALLLVD--EMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKM----PKLA 625 (1262)
Q Consensus 558 ~~--~~----~~~li~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~----~~~~ 625 (1262)
.. ++ |..++.-|..+-+......++. +.++. ..+....-.+........ ...+.+-+... ....
T Consensus 372 ~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~lr--kns~lr~lv~Lss~Eler~ 447 (1088)
T KOG4318|consen 372 LRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENLR--KNSFLRQLVGLSSTELERS 447 (1088)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHhC--cchHHHHHhhhhHHHHhcc
Confidence 11 11 4444444433222111111111 11111 001111111111111110 11111111111 1111
Q ss_pred CCC-------ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC--C
Q 000837 626 NKL-------DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRK--W 696 (1262)
Q Consensus 626 ~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~ 696 (1262)
+.+ -....+.++-.++..-+..+++..-+.....-+ ...|..||..++...+.+.|..+..+..... +
T Consensus 448 he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~ 524 (1088)
T KOG4318|consen 448 HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESI 524 (1088)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhh
Confidence 111 223345566667666666666655444433211 1578899999999999999999988876543 3
Q ss_pred CCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCC--ChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHH
Q 000837 697 LPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCL--RSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYS 774 (1262)
Q Consensus 697 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~ 774 (1262)
.-|..-+..+.+.+.+.+....+..++..+.+.-... ....++.++...+..|+.+...++.+-+...|+..+ .
T Consensus 525 ~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----g 600 (1088)
T KOG4318|consen 525 HLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----G 600 (1088)
T ss_pred hcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----c
Confidence 3466678888888999999999999988887743322 245666777788888888888888888777765442 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHh--cCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhh
Q 000837 775 HLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFR--TGRLEKAVALREISLKEQPLLLFSFHSAFISGFCV 852 (1262)
Q Consensus 775 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 852 (1262)
.++....+.++...|.+.++....+ .+|.+.....+...+.+ ..+++++..+-.. +..|.+
T Consensus 601 Pl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~----------------iq~f~k 663 (1088)
T KOG4318|consen 601 PLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIP----------------IQKFEK 663 (1088)
T ss_pred cceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcch----------------hHHHHh
Confidence 4555556667777777666655433 23333333333322221 1122222111100 111333
Q ss_pred cCCHHHHHHHH---------------------------HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 853 TGKAEEASKLF---------------------------RDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKR 905 (1262)
Q Consensus 853 ~g~~~~A~~~~---------------------------~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 905 (1262)
.|+..+|-++. +.+.+.| ...-++..|.+.|+++.|..+|.++.
T Consensus 664 ~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q--- 734 (1088)
T KOG4318|consen 664 LGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ--- 734 (1088)
T ss_pred cccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---
Confidence 33333333332 2222222 22337788888899999999888776
Q ss_pred CccChhhHHHHHHHHHhcC---ChhhHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 000837 906 LSLSISSYRNLVRWMCMEG---GVPWALNLKELMLGQN--KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDE 980 (1262)
Q Consensus 906 ~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 980 (1262)
+.|+..+...|++.+.+.. ++.++...-++..+.. .+.+...|.--+....+....+.|.++|.+..+....-+.
T Consensus 735 V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~ta 814 (1088)
T KOG4318|consen 735 VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTA 814 (1088)
T ss_pred CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcH
Confidence 5677777777777666543 3444444444444332 1223333444344444455556788889888887666667
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHH
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLE-LSQEMRLKGLVHDSIVQNAIAEG 1059 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~l~~~ 1059 (1262)
.++.-.+.++.... ..|...+. .|.......-+.+|..+.+.-.+.+|.. ++. | +....+..
T Consensus 815 d~ls~f~k~L~~nd--~~aa~sha----~Ges~~~l~tsRli~~llRrlgl~EA~~~lLg--------P---vv~~~L~k 877 (1088)
T KOG4318|consen 815 DELSDFLKCLVKND--QLAAQSHA----SGESSKELLTSRLINILLRRLGLAEALSALLG--------P---VVRKFLSK 877 (1088)
T ss_pred HHHHHHHHHHHhcC--HHHHHhcc----cccchhhhhhHHHHHHHHHHhhHHHHHHHHHh--------H---HHHHHHHH
Confidence 77777777766554 22222221 2443333333445666666666666666 222 2 33333444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhH
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCG----YGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDP 1135 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~ 1135 (1262)
+.-.|+++.-..+- .+.. - +...++..-..++. .+....-...+-+.++....|+..++..-....+....
T Consensus 878 la~~gdve~~qr~~-~qln--~--~e~r~~l~~~lfr~~n~laq~~~~f~~~~ae~i~~~~t~e~~t~~~q~f~~~~~~~ 952 (1088)
T KOG4318|consen 878 LACPGDVEALQRHC-LQLN--T--DEARMNLQFVLFRGSNFLAQSRMSFAMHFAELISMRKTEEAETFCDQLFHKVDPND 952 (1088)
T ss_pred ccCCccHHHHHHHH-HHhC--C--cHHhHHHHHHHHhcchHHHHHHHhhHHHHHHHHHHhhchhhhHhhHHhccccChHH
Confidence 44444443322222 2221 1 11122211111111 11111111222223333345666666665555333222
Q ss_pred HHHHHHHHHH------CCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH--HCCC-CC--CHHHHHHHHHHHHhcC
Q 000837 1136 AMDLHAEMMA------RDLKPSMNT---WHVLVHKLCQEGRTTEAERLLISMV--QLGD-TP--TQEMYSSVVNRYSLEN 1201 (1262)
Q Consensus 1136 A~~~~~~~~~------~~~~p~~~~---~~~l~~~~~~~g~~~~A~~l~~~~~--~~~~-~p--~~~~~~~l~~~~~~~g 1201 (1262)
.+..+..|.+ ..+.|.... .+.+...+...|+-..+..+++... ..++ .+ ...+|..++..++..|
T Consensus 953 ileal~e~v~~~sl~ae~~a~qf~l~~p~~~l~k~l~s~Gke~a~r~lldl~ri~~~~vlrt~reQ~aYdlL~~~~v~~~ 1032 (1088)
T KOG4318|consen 953 ILEALREMVKETSLKAESVADQFMLDFPALCLRKLLLSDGKEVAQRMLLDLLRICDTRVLRTTREQKAYDLLSEYGVELR 1032 (1088)
T ss_pred HHHHHHHhhhhHHHHHHhhchhhcccchHHHHHHHhhhcccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Confidence 3333333321 123332111 2445555666677666555555222 1111 22 2458999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1202 NLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
|+++|..+|+.+.+...+.+.. +..-+..+.+
T Consensus 1033 d~e~Ak~lla~liak~~kls~~-fL~rl~qlL~ 1064 (1088)
T KOG4318|consen 1033 DYEEAKNLLAALIAKHSKLSKK-FLFRLNQLLN 1064 (1088)
T ss_pred chHHHHHHHHHHHhhcchhhHH-HHHhHHHHHH
Confidence 9999999999999976554444 3333444433
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=5.1e-18 Score=198.08 Aligned_cols=301 Identities=14% Similarity=0.143 Sum_probs=255.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccC---hhhHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF---LSCYRVFIN 257 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 257 (1262)
.+..+..+...|++++|...|.++.+.. |++..++..++..|...|++++|+..++.+...+..+. ...+..++.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4444667788899999999999999876 66788999999999999999999999999987643221 357888999
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHH
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSS----LVFNEVAYGYC 333 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~ 333 (1262)
.|.+.|+++.|+.+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999987643 46778999999999999999999999999987533322 24566778889
Q ss_pred hcCCHHHHHHHHHHc-CCCC-CcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 000837 334 EKKDFEDLLSFFTEM-KCTP-DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVF 411 (1262)
Q Consensus 334 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~ 411 (1262)
+.|++++|...|+++ ...| +...+..+...+++.|++++|.++|+++.+.+......+++.++.+|++.|++++|...
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999 3334 45678889999999999999999999999764333356788999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHc
Q 000837 412 FSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCK---ARQFDEAKIMVSEMAKS 488 (1262)
Q Consensus 412 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~ 488 (1262)
++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.+++..++++|.+.
T Consensus 272 l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 99999874 56666788999999999999999999999886 6899999999988876 56899999999999987
Q ss_pred CCc
Q 000837 489 GLI 491 (1262)
Q Consensus 489 ~~~ 491 (1262)
++.
T Consensus 348 ~~~ 350 (389)
T PRK11788 348 QLK 350 (389)
T ss_pred HHh
Confidence 765
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=8.6e-16 Score=188.58 Aligned_cols=424 Identities=12% Similarity=0.018 Sum_probs=266.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHh
Q 000837 772 AYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFC 851 (1262)
Q Consensus 772 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 851 (1262)
.+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|++.++..++..+. +..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3445667778888888888888888764 456677888888888888888888888888877655 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHH
Q 000837 852 VTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALN 931 (1262)
Q Consensus 852 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 931 (1262)
..|++++|+..|..+...+...+. ....++..+.. ..+.......++... ++...+..+.. +........+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchh
Confidence 888888888888776553322121 11122211111 122222333333221 12222222222 222111222221
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHhhHHHHHHHhhcCCChhHHHHHHHHH
Q 000837 932 LKELMLGQNKSHNLIIFNILVFHL---MSSGNIFHVKRVLDELQENE-LLP-DEVTYNFLIYGFSKHKDVSSSKYYIAAM 1006 (1262)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m 1006 (1262)
-+....+.... ....+..+...+ ...+++++|.+.|++..+.+ ..| +...|..+...+...|++++|+..|++.
T Consensus 279 ~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 279 GLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111111000 111111111111 22467888888888887754 233 3456677777777888888888888888
Q ss_pred HHCCCCCC-hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 000837 1007 VSKGFNPS-NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD- 1084 (1262)
Q Consensus 1007 ~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~- 1084 (1262)
++. .|+ ...|..+..++...|++++|+..++++.+.. +.+..+|..+...+...|++++|+..|++.++. .|+
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~ 432 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDF 432 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccC
Confidence 874 454 4466677777888888888888888887752 334778888888888888888888888888874 444
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHH--HHcc-cCChhHHHHHHHHHHHCCCCCCH-H------
Q 000837 1085 TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS-SSYDS--IIST-CNKLDPAMDLHAEMMARDLKPSM-N------ 1153 (1262)
Q Consensus 1085 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~--ll~~-~g~~~~A~~~~~~~~~~~~~p~~-~------ 1153 (1262)
...+..+..++.+.|++++|+..+++.++. .|+. ..+.. .+.. .|++++|++.|++... +.|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~ 508 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVL 508 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHH
Confidence 667777888888888888888888888774 3332 22222 2222 7888888888888876 33421 1
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1154 T-WHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1154 ~-~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
. +......+...|++++|+++++++++.. +.+..++..+++.+...|++++|++.++++.+.
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 1111222334688888888888888753 334567778888888888888888888888773
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.82 E-value=1.7e-15 Score=171.12 Aligned_cols=552 Identities=15% Similarity=0.126 Sum_probs=282.2
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 000837 375 LFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRG 454 (1262)
Q Consensus 375 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 454 (1262)
.++-.|...|+.|+.+||..+|..||..|+.+.|- +|.-|.-+...-....++.++.+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46778888999999999999999999999999998 8998887777778889999999999999988877
Q ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhh
Q 000837 455 ITPSLSTYRILLAGYCKARQFDEAKIMVSE-MAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNL 533 (1262)
Q Consensus 455 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 533 (1262)
.|...||..|+.+|...|++.. .+..++ |.... ..++..|....... . ...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~------------~sfs~~Gvgs~e~~-------------f-l~k 131 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESIN------------QSFSDHGVGSPERW-------------F-LMK 131 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHH------------hhhhhhccCcHHHH-------------H-Hhh
Confidence 5888999999999999998765 222222 22111 11112221111110 0 000
Q ss_pred hhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCchH
Q 000837 534 GNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWG-QELSLSVFSALVKGLCASRSHIK 612 (1262)
Q Consensus 534 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~ 612 (1262)
+. ...+..|+-...+.-....|-++.+++++..+.... ..|..+ +++.......+++
T Consensus 132 ~~------------------c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpve 189 (1088)
T KOG4318|consen 132 IH------------------CCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVE 189 (1088)
T ss_pred cc------------------cCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHH
Confidence 00 011122222233333444455555555554442211 111111 1332222222222
Q ss_pred HHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 000837 613 ACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQ 692 (1262)
Q Consensus 613 ~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 692 (1262)
++..........++..+|..++..-...|+++.|..++.+|.+.|++.+...|..|+-+ .++...+..++.-|.
T Consensus 190 ---kLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq 263 (1088)
T KOG4318|consen 190 ---KLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ 263 (1088)
T ss_pred ---HHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH
Confidence 22222222222467777888887777788888888888888888887777777777655 667777777777888
Q ss_pred hcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHH------------HH
Q 000837 693 NRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALV------------EE 760 (1262)
Q Consensus 693 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l------------~~ 760 (1262)
+.|+.|+.+|+...+..+..+|....+.+... ....+...+++....| ..|.+.+ ..
T Consensus 264 e~gv~p~seT~adyvip~l~N~~t~~~~e~sq---------~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~ 332 (1088)
T KOG4318|consen 264 EKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ---------LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKK 332 (1088)
T ss_pred HhcCCCCcchhHHHHHhhhcchhhhhcccccc---------hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhH
Confidence 88888888887777666666554332221110 0111112222222233 1222211 11
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC-CChhcHHhHHHHHHhcCCHHHHHHHHH--HHhhcC
Q 000837 761 LLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKN--MA-PCLDVSVSLIPQLFRTGRLEKAVALRE--ISLKEQ 835 (1262)
Q Consensus 761 ~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~ 835 (1262)
..-.|.......|...+.. ..+|.-++.+++...+...- .. .++..+..++..|.+.-+......++. +..+..
T Consensus 333 ~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~ 411 (1088)
T KOG4318|consen 333 LFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN 411 (1088)
T ss_pred HHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 1112333333333333222 22566666666666654211 11 123334444444443222111111111 111100
Q ss_pred CCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHH----CCCC-------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 836 PLLLFSFHSAFISGFCVTGKAEEASKLFRDMLS----QGML-------LEDEVYNMLIQGHCEANNLRKVRELLSAMIRK 904 (1262)
Q Consensus 836 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-------pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 904 (1262)
. ++..--.+.....+. +...+.+-+..+.. .-.. +-...-+.++..++..-+..+++..-+.+...
T Consensus 412 l--~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~ 488 (1088)
T KOG4318|consen 412 L--NSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL 488 (1088)
T ss_pred h--chhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000000000 11111111111100 0000 01112334444555555555554433333222
Q ss_pred CCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-H
Q 000837 905 RLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKS--HNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL-LPD-E 980 (1262)
Q Consensus 905 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd-~ 980 (1262)
-+ ...|..|++.++...+.+.|..+.+++...... .+..-+..+.+.+.+.+...++..+++++.+.-. .|+ .
T Consensus 489 lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a 565 (1088)
T KOG4318|consen 489 LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVA 565 (1088)
T ss_pred Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHH
Confidence 11 145677777777777777777777766654322 2444566667777777777777777777766322 121 2
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHCCC
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGF 1011 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 1011 (1262)
.++-.+++.....|+.+.-.++++-+...|+
T Consensus 566 ~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 566 IILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 3444455556666666666666666655544
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=7.1e-16 Score=188.00 Aligned_cols=359 Identities=11% Similarity=0.052 Sum_probs=274.9
Q ss_pred hhhHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 000837 154 NEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERA 233 (1262)
Q Consensus 154 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 233 (1262)
+.+|+..+-.|+........-..+..-....+..+.+.|++++|..++....... |.++.+...++.++...|++++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHH
Confidence 3455566556665543211111222334456667778899999999999988876 55778888888899999999999
Q ss_pred HHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 234 VLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKA 313 (1262)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 313 (1262)
+..|+++.+..+. +...|..+...+...|++++|...|+++++..+. +...+..++.++...|++++|...++.+
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~----~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG----NSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999988654 6778888899999999999999999999887643 5667888888999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CC--CCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH
Q 000837 314 MAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KC--TPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEI 390 (1262)
Q Consensus 314 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 390 (1262)
.... +.+...+..+ ..+...|++++|...++.+ .. .++...+..+...+.+.|++++|...+++..+.. +.+..
T Consensus 171 ~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 7764 2333344333 3478889999999999987 22 2334445556778888999999999999988765 33567
Q ss_pred hHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHH
Q 000837 391 TFGILIGWTCREGNLRS----ALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILL 466 (1262)
Q Consensus 391 ty~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 466 (1262)
.+..+...+...|++++ |...|++..+..+. +...+..+...+.+.|++++|...+++..+... .+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 77888899999999886 78999988877433 677888889999999999999999999888642 2355677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCch-hhHHhhhhhhccCCCHHH
Q 000837 467 AGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKV-EFFDNLGNGLYLDTDLDE 545 (1262)
Q Consensus 467 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 545 (1262)
..|.+.|++++|...++++.+.+ |+. ..+...+..+...|+.++
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~-----------------------------------P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK-----------------------------------GVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-----------------------------------ccchHHHHHHHHHHHHCCCHHH
Confidence 88999999999999999988765 333 334445677888899999
Q ss_pred HHHHHHHHhhcCCC
Q 000837 546 YERKLSKIIEDSMI 559 (1262)
Q Consensus 546 a~~~l~~~~~~~~~ 559 (1262)
|...+++.+...+.
T Consensus 371 A~~~l~~al~~~P~ 384 (656)
T PRK15174 371 AESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHhChh
Confidence 99999988776654
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=1.9e-17 Score=193.16 Aligned_cols=264 Identities=9% Similarity=0.030 Sum_probs=125.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHH
Q 000837 219 NLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLC 298 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~ 298 (1262)
.++..+...|++++|+..|.++.+.++. +..++..+...+...|++++|...++.++..+..........+..++..+.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3455666778888888888888776543 556777777777777777777777777765432100001123444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCc------ccHHHHHHHHHhhCChh
Q 000837 299 RDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDV------LAGNRIIHTLCSIFGSK 371 (1262)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~li~~~~~~g~~~ 371 (1262)
+.|++++|..++.++.+.. +.+..+++.++..|++.|++++|.+.++++ ...|+. ..+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 5555555555555555432 233444555555555555555555555544 111111 11223333444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 372 RADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMV 451 (1262)
Q Consensus 372 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 451 (1262)
+|...|+++.+.. +.+..++..+...+.+.|++++|.++|+++.+.+......+++.++.+|++.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444322 112233334444444444444444444444433222112333444444444444444444444444
Q ss_pred hCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000837 452 NRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487 (1262)
Q Consensus 452 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 487 (1262)
+. .|+...+..++..+.+.|++++|..+++++.+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33 12333333344444444444444444444433
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=4.2e-14 Score=161.60 Aligned_cols=625 Identities=13% Similarity=0.071 Sum_probs=342.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChH
Q 000837 568 MVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVR 647 (1262)
Q Consensus 568 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 647 (1262)
....+|+.++|..++.++++..+ .+...|.+|-..|-..|+ .+++...+-.+....+. |..-|..+.....+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd-~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGD-IEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHccc-HHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 34445777777777777776532 245566666666666666 66666555444433322 5566666666666666677
Q ss_pred HHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccH----HHHHHHHhhhCchHhHHHHH
Q 000837 648 DGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDC----KSLVECLCHKKLLKESLQLF 723 (1262)
Q Consensus 648 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~ 723 (1262)
.|.-+|.++++..+. +...+---+..|-+.|+...|...|.++....-..|-.-+ -.++..+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777666665443 4334444455566666666666666666554310011111 11223333344444444444
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--
Q 000837 724 ECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNM-- 801 (1262)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-- 801 (1262)
+..... .+-..+...++.++..+.+...++.+......+.....
T Consensus 304 e~~~s~----------------------------------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 304 EGALSK----------------------------------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred HHHHhh----------------------------------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 444331 12233444555556666666666666555555443111
Q ss_pred -------------------------CCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC--CCchHHhHHHHHHHHhhcC
Q 000837 802 -------------------------APCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ--PLLLFSFHSAFISGFCVTG 854 (1262)
Q Consensus 802 -------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 854 (1262)
.++..+ ..+.-++.+....+....+..-+.... +.-++..|..+..+|...|
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG 428 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence 111111 011112222222222222333333332 3344556666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHH
Q 000837 855 KAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKE 934 (1262)
Q Consensus 855 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 934 (1262)
++.+|+.+|..+...-..-+...|-.+..+|-..|.+++|.+.|...+...+ .+...--.|...+-+.|+.++|.+.++
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 7777777777776644434455666677777777777777777777766532 234444556666667777777777776
Q ss_pred HHHhCC--------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-----------------CHhhHH
Q 000837 935 LMLGQN--------KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENE-----LLP-----------------DEVTYN 984 (1262)
Q Consensus 935 ~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p-----------------d~~~~~ 984 (1262)
.+...+ ..|+..........+.+.|+.++-+.+..+|.... +-| ......
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~ 587 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLK 587 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHH
Confidence 644221 22333334444566667777777665555544321 101 111122
Q ss_pred HHHHHhhcCCChhHHHHH------HHHHHHCCCCCCh--hcHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCH---H
Q 000837 985 FLIYGFSKHKDVSSSKYY------IAAMVSKGFNPSN--RSLRSVISCLCEVGELGKSLELSQEMRLKGL--VHDS---I 1051 (1262)
Q Consensus 985 ~li~~~~~~g~~~~A~~~------~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~---~ 1051 (1262)
.++.+-.+.++....... +......|+.-+. ..+.-++.++++.+++++|+.++..+.+... .++. .
T Consensus 588 ~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~ 667 (895)
T KOG2076|consen 588 QIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKE 667 (895)
T ss_pred HHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHH
Confidence 222333333221111111 1111112222221 2345677799999999999999998887422 2222 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDK---DLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII 1127 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 1127 (1262)
.-...+.+.+..+++..|.+.+..|... ...|. ...||.......+.++----.+++..+... .|+......++
T Consensus 668 l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i 745 (895)
T KOG2076|consen 668 LQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALI 745 (895)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeee
Confidence 4456677788899999999999999864 11232 445665556666666554444454444433 23332223333
Q ss_pred cc-----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH----------hcCCHHHHHHHHHHHHHCCCC-CCHHHH
Q 000837 1128 ST-----CNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLC----------QEGRTTEAERLLISMVQLGDT-PTQEMY 1190 (1262)
Q Consensus 1128 ~~-----~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~l~~~~~~~~~~-p~~~~~ 1190 (1262)
.+ ++.+..|+..|-++.. ..|+ |.+--+++-++. |+-..-++...+++..+.-.. ....++
T Consensus 746 ~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~ 823 (895)
T KOG2076|consen 746 YGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAF 823 (895)
T ss_pred echhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 33 8899999998888876 6675 333333333321 111233566677776664211 247888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh------------hhHHHHHHHhhccccc
Q 000837 1191 SSVVNRYSLENNLGKASELMQAMQQSGYSPDF------------STHWSLISNLRNSNDK 1238 (1262)
Q Consensus 1191 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------~~~~~~l~~l~~~~~~ 1238 (1262)
+.++++|-..|-..-|+.+|+++++. .|-+ ..+...|.-+|++.|.
T Consensus 824 YNigRayh~~gl~~LA~~YYekvL~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn 881 (895)
T KOG2076|consen 824 YNIGRAYHQIGLVHLAVSYYEKVLEV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGN 881 (895)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhCC--CccccccccCCcccHHHHHHhhhhhhhccCCc
Confidence 89999999999999999999999984 3211 1134556667776543
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=2.2e-13 Score=155.85 Aligned_cols=361 Identities=12% Similarity=0.080 Sum_probs=248.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcC
Q 000837 184 MALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMK 263 (1262)
Q Consensus 184 l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~ 263 (1262)
.+..+.-.|++++|.+++.+++++. |.++..|..|...|-..|+.+++...+-..-..++. |...|-.+.......|
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc
Confidence 3444556699999999999999887 567788999999999999999998888877777655 5688888888888899
Q ss_pred chhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHH
Q 000837 264 VTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVF----NEVAYGYCEKKDFE 339 (1262)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~ 339 (1262)
.+++|.-.|.++++..+. +...+..-...|-+.|+...|..-+.++.....+.|..-+ -.+++.+...++-+
T Consensus 222 ~i~qA~~cy~rAI~~~p~----n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPS----NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999888753 5556666677788889999999999998876432232222 23456667777778
Q ss_pred HHHHHHHHc----CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH----------------------hHH
Q 000837 340 DLLSFFTEM----KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEI----------------------TFG 393 (1262)
Q Consensus 340 ~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------ty~ 393 (1262)
.|.+.++.. +...+...++.++..|.+...++.|......+.....++|.. .|.
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 888888877 334456678888999999999999888887777622222221 111
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 000837 394 ----ILIGWTCREGNLRSALVFFSEILSRG--LNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLA 467 (1262)
Q Consensus 394 ----~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 467 (1262)
.+.-++......+....+........ +.-++-.|.-+..+|...|++.+|.++|..+...-.--+...|--+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 12222333333333333344444444 444567788888888888888888888888887755556778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHH
Q 000837 468 GYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYE 547 (1262)
Q Consensus 468 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 547 (1262)
+|-..|.+++|.+.++..+...+ .+...-..+...+.+.|+.++|.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p----------------------------------~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAP----------------------------------DNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC----------------------------------CchhhhhhHHHHHHhcCCHHHHH
Confidence 88888888888888888887654 23344445556667777777777
Q ss_pred HHHHHHhhcCCC--------CC---hHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 548 RKLSKIIEDSMI--------PN---FNSLIKMVHARGNLKAALLLVDEM 585 (1262)
Q Consensus 548 ~~l~~~~~~~~~--------~~---~~~li~~~~~~g~~~~A~~~~~~m 585 (1262)
+.+.++...+.. |. .....+.+.+.|+.++=+..-..|
T Consensus 504 EtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 504 ETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777775533311 11 223344455566665544444444
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=4.2e-15 Score=182.55 Aligned_cols=91 Identities=11% Similarity=-0.118 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLV 260 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~ 260 (1262)
+...+..+.+.|+|++|...+.+.++.. | ++..|..+..+|...|++++|++.+++..+.++. +..+|..+..++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--P-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4444555555555555555555555432 2 2344555555555555555555555555554332 3444555555555
Q ss_pred hcCchhHHHHHHHHH
Q 000837 261 KMKVTHLAFRVCVDM 275 (1262)
Q Consensus 261 ~~~~~~~A~~~~~~m 275 (1262)
..|++++|+..|...
T Consensus 206 ~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 206 GLGKYADALLDLTAS 220 (615)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555444
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=4e-15 Score=185.79 Aligned_cols=410 Identities=12% Similarity=0.019 Sum_probs=250.0
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 000837 809 VSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEA 888 (1262)
Q Consensus 809 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 888 (1262)
.-.+......|+.++|++++.......+. +...+..+...+.+.|++++|..+|++.++... .+...+..+..++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~-~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQL-PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC
Confidence 33444445555555555555555432211 233345555555555555555555555554211 1233344444455555
Q ss_pred CCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 000837 889 NNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVL 968 (1262)
Q Consensus 889 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 968 (1262)
|++++|...++++++... .+.. +..+...+...|+.++|+..++.+.+..+. +...+..+..++...|..++|++.+
T Consensus 97 g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 555555555555555422 2233 555555555556666666666555554222 3334444555555566666666655
Q ss_pred HHHHHCCCCCCH------hhHHHHHHHh-----hcCCCh---hHHHHHHHHHHHC-CCCCChh-cHH----HHHHHHHhc
Q 000837 969 DELQENELLPDE------VTYNFLIYGF-----SKHKDV---SSSKYYIAAMVSK-GFNPSNR-SLR----SVISCLCEV 1028 (1262)
Q Consensus 969 ~~m~~~g~~pd~------~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~ 1028 (1262)
+.... .|+. .....++... ...+++ ++|+..++.+.+. ...|+.. .+. ..+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 54432 1221 0111111111 122233 6788888888863 2233321 111 113345677
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhcCChHHH
Q 000837 1029 GELGKSLELSQEMRLKGLV-HDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP---DTINYDNLIKRFCGYGRLDKA 1104 (1262)
Q Consensus 1029 g~~~~A~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A 1104 (1262)
|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+..... ....+..|..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8999999999998886532 332 22225778889999999999999987643211 124566677788899999999
Q ss_pred HHHHHHHHhCCC-----------CCCHHH--H----HHHHcccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 000837 1105 VDLLNIMLKKGS-----------TPNSSS--Y----DSIISTCNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEG 1166 (1262)
Q Consensus 1105 ~~~~~~~~~~~~-----------~p~~~~--~----~~ll~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 1166 (1262)
.+.++.+..... .|+... . ..++...|++++|++.++++.. ..| +...+..++..+...|
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 999998887521 123211 1 1111128999999999999987 456 7788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 000837 1167 RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1167 ~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l 1232 (1262)
++++|++.++++.+.. +.+...+..++..+...|++++|..+++++++ ..|+++....+=...
T Consensus 408 ~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 408 WPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999852 44578888899999999999999999999999 689988665554444
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=7e-12 Score=137.49 Aligned_cols=615 Identities=10% Similarity=0.029 Sum_probs=380.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHH
Q 000837 540 DTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGL 617 (1262)
Q Consensus 540 ~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l 617 (1262)
.+|...|..+++.+.+-+|... |-+-.+.--..|.+..|..+..+--+. +..+...|-..++ ... .+.|..+
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lhp-~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LHP-PDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cCC-hHHHHHH
Confidence 3467788888888887776544 666666666677777777765443332 3334444443332 222 4556666
Q ss_pred HHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 000837 618 LEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWL 697 (1262)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 697 (1262)
........+. ++..|-.-++ -..+...-.+++++.++.- +.++..|.... ...+.++|..++.+..+. .
T Consensus 338 vA~Avr~~P~-Sv~lW~kA~d---LE~~~~~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec--c 406 (913)
T KOG0495|consen 338 VANAVRFLPT-SVRLWLKAAD---LESDTKNKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC--C 406 (913)
T ss_pred HHHHHHhCCC-ChhhhhhHHh---hhhHHHHHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh--c
Confidence 5555443221 3333322221 1223333445666666652 22555555433 345556677777777663 2
Q ss_pred CCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHH
Q 000837 698 PGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLI 777 (1262)
Q Consensus 698 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li 777 (1262)
|. -.-|.-+|.+..-++.|..+++++.+.-|. +...|.+-.
T Consensus 407 p~---s~dLwlAlarLetYenAkkvLNkaRe~ipt------------------------------------d~~IWitaa 447 (913)
T KOG0495|consen 407 PQ---SMDLWLALARLETYENAKKVLNKAREIIPT------------------------------------DREIWITAA 447 (913)
T ss_pred cc---hHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------------------------------------ChhHHHHHH
Confidence 31 123445566677777888888777766555 334443333
Q ss_pred HHHHhcCCHHHHHHHHHHHh----hCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCc--hHHhHHHHHHHHh
Q 000837 778 RGLCKEKKFSVAFKMLDSML----DKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLL--LFSFHSAFISGFC 851 (1262)
Q Consensus 778 ~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 851 (1262)
..--..|+.+....++++-+ ..|...+..-+..=...|-..|..-.+..+....+.-|.+- -..+|..-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 33334444444444443322 23444444444444445555555555555555544443332 2345666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHH
Q 000837 852 VTGKAEEASKLFRDMLSQGMLL-EDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWAL 930 (1262)
Q Consensus 852 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 930 (1262)
+.+.++-|..+|...++ +.| +...|......=-..|..+....+|++++..- +.....|...+..+...|++..|.
T Consensus 528 k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 66666666666666665 333 23334444333344566666666776666653 234455555566666677777777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCC
Q 000837 931 NLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKG 1010 (1262)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 1010 (1262)
.++....+..+. +...|-.-+.....+..+++|..+|.+.... .|+...|.--+..-...+..++|++++++.++.
T Consensus 605 ~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 777776665333 5566777777777778888888888777663 456666665555556677888888888888773
Q ss_pred CCCCh-hcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 000837 1011 FNPSN-RSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYD 1089 (1262)
Q Consensus 1011 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 1089 (1262)
-|+. ..|..+...+-+.++++.|.+.|..-.+. ++.....|-.|...=-+.|.+-.|..++++..-++.. +...|-
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHH
Confidence 3443 45555666777888888888877766554 3444667777777777888888899999888765433 577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 000837 1090 NLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEG 1166 (1262)
Q Consensus 1090 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 1166 (1262)
..|..-.+.|+.+.|..++.+.++. ++.+-.-|..-|.. -++--.+.+.+++ +.-|+..+-.++..+....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHH
Confidence 8888888899999998888888775 33344445555544 2332333333332 4567778889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHH
Q 000837 1167 RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLI 1229 (1262)
Q Consensus 1167 ~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 1229 (1262)
+++.|.+.|.++++.+ +.+..+|.-+..-+..+|.-+.-.+++++... .+|.....|.-+
T Consensus 832 k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 9999999999999863 44577777788889999998888999999887 577766666544
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=1.2e-14 Score=181.55 Aligned_cols=190 Identities=10% Similarity=-0.003 Sum_probs=111.5
Q ss_pred HhcCChhhHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHhhcCCCh
Q 000837 921 CMEGGVPWALNLKELMLGQNKS-HNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLP---DEVTYNFLIYGFSKHKDV 996 (1262)
Q Consensus 921 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~li~~~~~~g~~ 996 (1262)
...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3446666666666666554321 111 11123555666666666666666655432110 012344445556666666
Q ss_pred hHHHHHHHHHHHCCC-----------CCCh---hcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 000837 997 SSSKYYIAAMVSKGF-----------NPSN---RSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLS 1062 (1262)
Q Consensus 997 ~~A~~~~~~m~~~g~-----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 1062 (1262)
++|..+++++.+... .|+. ..+..+...+...|++++|++.++++... .+.+...+..++..+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 666666666665310 1221 12344555666777777777777777665 23346677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1063 RGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1063 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
.|++++|++.++++++ ..|+ ...+..++..+...|++++|.++++++++.
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777777777777776 3454 555666666677777777777777777764
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=4.3e-15 Score=181.22 Aligned_cols=330 Identities=9% Similarity=0.027 Sum_probs=268.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHH
Q 000837 217 FSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRL 296 (1262)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~ 296 (1262)
....+..+.+.|++++|..++.......+. +...+..++.++...|++++|...|+++++..+. +...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~----~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC----QPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHH
Confidence 445677889999999999999999988666 4556666677888899999999999999998764 56778888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcccHHHHHHHHHhhCChhHHHH
Q 000837 297 LCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVLAGNRIIHTLCSIFGSKRADL 375 (1262)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 375 (1262)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+ ...|+.......+..+.+.|++++|..
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999998864 556788889999999999999999999988 334443332222345788999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHH
Q 000837 376 FVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKH----AKEILDEMV 451 (1262)
Q Consensus 376 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~----A~~l~~~m~ 451 (1262)
.++.+.+....++...+..+...+.+.|++++|...+++..+..+. +...+..+...|...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999887654445556666678888999999999999999987533 57788889999999999986 799999998
Q ss_pred hCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHH
Q 000837 452 NRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFD 531 (1262)
Q Consensus 452 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 531 (1262)
+... .+...+..+...+.+.|++++|...+++..+..+ .+.....
T Consensus 278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P----------------------------------~~~~a~~ 322 (656)
T PRK15174 278 QFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP----------------------------------DLPYVRA 322 (656)
T ss_pred hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------------------------CCHHHHH
Confidence 8642 2567888899999999999999999999988764 3455677
Q ss_pred hhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 000837 532 NLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRW 588 (1262)
Q Consensus 532 ~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 588 (1262)
.++..+...|++++|...++++....+... +..+..++...|++++|+..|++..+.
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 788888889999999999998887766543 344567788899999999999888774
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=6.5e-14 Score=170.32 Aligned_cols=435 Identities=12% Similarity=0.066 Sum_probs=257.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHH
Q 000837 781 CKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEAS 860 (1262)
Q Consensus 781 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 860 (1262)
.+.|+++.|+..|++..+....-...++ .++..+...|+.++|+..+++.....+. .......+...|...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~-~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNI-SSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555555443211101122 4444455555555555555555411111 1122222233455555555555
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 000837 861 KLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQN 940 (1262)
Q Consensus 861 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 940 (1262)
++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 555555553322 2333344444555555555555555555443 2233333333333333344434555555555542
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH------HHHHHHh-----hcCCC---hhHHHHHHHHH
Q 000837 941 KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTY------NFLIYGF-----SKHKD---VSSSKYYIAAM 1006 (1262)
Q Consensus 941 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~------~~li~~~-----~~~g~---~~~A~~~~~~m 1006 (1262)
+.+...+..+..++.+.|-...|.++..+-..- +.+...-+ ..++..- ...++ .+.|+.-++.+
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 223444445555555555555555444332211 11111000 0011000 01112 34555566665
Q ss_pred HHC-CCCCCh-hcH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000837 1007 VSK-GFNPSN-RSL----RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKD 1080 (1262)
Q Consensus 1007 ~~~-g~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 1080 (1262)
... +-.|.. ..| .-.+-++...|++.++++.++.+...|.+....+-..++++|...+++++|+.+|+++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 542 222332 222 22445788899999999999999988766566788899999999999999999999997643
Q ss_pred C-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCCH--HHHHHHHcc----cCChhHHHH
Q 000837 1081 L-----VPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGS-----------TPNS--SSYDSIIST----CNKLDPAMD 1138 (1262)
Q Consensus 1081 ~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~--~~~~~ll~~----~g~~~~A~~ 1138 (1262)
. .++......|..+|...+++++|..+++.+.+... .|+. ..+..+... .|++.+|.+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 22344457889999999999999999999988311 1222 122222221 899999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 000837 1139 LHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSG 1217 (1262)
Q Consensus 1139 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 1217 (1262)
.++++.. ..| |......++..+...|...+|+++++.+... .+.+..+....+.++...|++++|..+.+.+++
T Consensus 438 ~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~-- 512 (822)
T PRK14574 438 KLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVIS-- 512 (822)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--
Confidence 9999987 667 8899999999999999999999999887765 244577888999999999999999999999999
Q ss_pred CCCChhhHHH
Q 000837 1218 YSPDFSTHWS 1227 (1262)
Q Consensus 1218 ~~p~~~~~~~ 1227 (1262)
..|++...-.
T Consensus 513 ~~Pe~~~~~~ 522 (822)
T PRK14574 513 RSPEDIPSQE 522 (822)
T ss_pred hCCCchhHHH
Confidence 6887775433
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=1.4e-11 Score=135.30 Aligned_cols=507 Identities=14% Similarity=0.071 Sum_probs=354.5
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCC
Q 000837 548 RKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANK 627 (1262)
Q Consensus 548 ~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~ 627 (1262)
+++.+.++.-|. -..|-.+.....+.+.|..++.+..+. +..+...|.++ .+... ++.|.+++....+. ++
T Consensus 367 RVlRKALe~iP~--sv~LWKaAVelE~~~darilL~rAvec-cp~s~dLwlAl----arLet-YenAkkvLNkaRe~-ip 437 (913)
T KOG0495|consen 367 RVLRKALEHIPR--SVRLWKAAVELEEPEDARILLERAVEC-CPQSMDLWLAL----ARLET-YENAKKVLNKAREI-IP 437 (913)
T ss_pred HHHHHHHHhCCc--hHHHHHHHHhccChHHHHHHHHHHHHh-ccchHHHHHHH----HHHHH-HHHHHHHHHHHHhh-CC
Confidence 444444444333 334555666777777788888888874 33333444433 33344 88888888888664 44
Q ss_pred CChHHHHHHHHHHHccCChHHHHHHHHHH----hhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC--Ccc
Q 000837 628 LDQESLNLLIQACCKKGLVRDGKKIFDGM----LQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLP--GLE 701 (1262)
Q Consensus 628 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~ 701 (1262)
.+..+|.+-...--.+|+.+...+++++- ...|+..+...|..=...|-+.|..-.+..+....+.-|+.. -..
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 48888877666666788888888887654 456888899999888888888898888888888888777654 345
Q ss_pred cHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 000837 702 DCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLC 781 (1262)
Q Consensus 702 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~ 781 (1262)
||..-...|.+.+.++-|..+|..+++..|. +...|......--
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~------------------------------------k~slWlra~~~ek 561 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPC------------------------------------KKSLWLRAAMFEK 561 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccc------------------------------------hhHHHHHHHHHHH
Confidence 7788888888888888888888888776665 4455555555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHH
Q 000837 782 KEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASK 861 (1262)
Q Consensus 782 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 861 (1262)
..|..+....+|+++...- +-....+......+...|++..|..++.+..+..+. +...|-.-+........++.|..
T Consensus 562 ~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHH
Confidence 5666666677777666542 223344445555666777777777777777776655 66667777777777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 000837 862 LFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNK 941 (1262)
Q Consensus 862 ~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 941 (1262)
+|.+.... .|....|.--+..--..++.++|.+++++.++. ++.-...|..+.+.+-..++++.|...|..-.+. .
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 77777663 345555554444444567777777777777765 3333455666677777777777777777655443 2
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHH
Q 000837 942 SHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSV 1021 (1262)
Q Consensus 942 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 1021 (1262)
+..+..|-.|...--+.|.+-+|..+|++..-++. -+...|...|.+=.+.|..+.|..+..+.++. ++.+...|..-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHH
Confidence 33556677777777778888888888888776643 26677888888888888888888888887774 34445566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCC
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGR 1100 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 1100 (1262)
|....+.++-......+++ ...|+.+.-.+...+....++++|.+.|++..+. .|| ..+|..+...+...|.
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCC
Confidence 6666665554444333332 4567888888889999999999999999999985 444 6788888888999998
Q ss_pred hHHHHHHHHHHHhC
Q 000837 1101 LDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1101 ~~~A~~~~~~~~~~ 1114 (1262)
-++-.+++++....
T Consensus 867 eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 867 EEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888887764
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.8e-14 Score=148.19 Aligned_cols=254 Identities=17% Similarity=0.235 Sum_probs=164.2
Q ss_pred hcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 000837 334 EKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFS 413 (1262)
Q Consensus 334 ~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 413 (1262)
+.|.+.+ -+|+.. +....+|.++|.++|+-...++|.+++++-.+...+.+..+||.+|.+-.-. ...++..
T Consensus 191 K~G~vAd--L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~ 262 (625)
T KOG4422|consen 191 KSGAVAD--LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVA 262 (625)
T ss_pred ccccHHH--HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHH
Confidence 4555554 344444 3455788999999999999999999999988877789999999999875432 2388999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc
Q 000837 414 EILSRGLNPDVHTYNSLISGMFKEGMSKHA----KEILDEMVNRGITPSLSTYRILLAGYCKARQFDE-AKIMVSEMAKS 488 (1262)
Q Consensus 414 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A----~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~ 488 (1262)
+|....+.||..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|.-+|+.++..+ |..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 999999999999999999999999987665 5688899999999999999999999999987643 45555554432
Q ss_pred CCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCC---CCC----
Q 000837 489 GLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSM---IPN---- 561 (1262)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~---~~~---- 561 (1262)
-. | +...+....+...|......+....+.+-|.++..-...... .+.
T Consensus 343 lt-----------------G--------K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 343 LT-----------------G--------KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred hc-----------------c--------CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 10 0 000111114455666666666666666666655443332211 111
Q ss_pred ---hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 000837 562 ---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKM 621 (1262)
Q Consensus 562 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~ 621 (1262)
|..+....|+....+.-...|+.|+-.-.-|+..+...++++....+. ++-.-+++..+
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~-~e~ipRiw~D~ 459 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANR-LEVIPRIWKDS 459 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCc-chhHHHHHHHH
Confidence 334444445555555555555555444444444444444444433333 33333333333
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.4e-13 Score=167.56 Aligned_cols=427 Identities=11% Similarity=0.038 Sum_probs=237.1
Q ss_pred HHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcc-cHHHH--HHHHhhhCch
Q 000837 640 CCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLE-DCKSL--VECLCHKKLL 716 (1262)
Q Consensus 640 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~ 716 (1262)
..+.|+++.|++.|++..+..+.-....+ .++..+...|+.++|+..+++.. .|+.. .+..+ ...+...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 56889999999999999887554212334 77777888899999999998887 24322 23333 4567778999
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 717 KESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSM 796 (1262)
Q Consensus 717 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~ 796 (1262)
++|+++|+++++..|. +...+..++..+...++.++|+..++.+
T Consensus 119 d~Aiely~kaL~~dP~------------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 119 DQALALWQSSLKKDPT------------------------------------NPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHHHhhCCC------------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 9999999999888887 3333344445555555555555555555
Q ss_pred hhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 000837 797 LDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDE 876 (1262)
Q Consensus 797 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 876 (1262)
... .|+...+..++..+...++..+|++.++++.+..|. +...+..+...+.+.|-...|+++.++-..- ..+...
T Consensus 163 ~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~ 238 (822)
T PRK14574 163 AER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHY 238 (822)
T ss_pred ccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHH
Confidence 443 222333333333333344444455555555555433 3344444555555555555555444331110 000000
Q ss_pred h------HHHHHH-HH----HhcCC---HHHHHHHHHHHHHC-CCccCh-h----hHHHHHHHHHhcCChhhHHHHHHHH
Q 000837 877 V------YNMLIQ-GH----CEANN---LRKVRELLSAMIRK-RLSLSI-S----SYRNLVRWMCMEGGVPWALNLKELM 936 (1262)
Q Consensus 877 t------~~~ll~-~~----~~~g~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~ 936 (1262)
. ....+. +. ...++ .+.|+.-++.++.. +..|.. . .....+-++...++..++++.|+.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0 000000 00 00111 23344444444432 111221 1 1122344555667777777777777
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCC
Q 000837 937 LGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENE-----LLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGF 1011 (1262)
Q Consensus 937 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 1011 (1262)
...+.+....+-..+.++|...+++++|..+|+++.... ..++......|..++...+++++|..+++++.+...
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 666544344455666777777777777777777765432 112223345666777777777777777777766210
Q ss_pred -----------CC--Chh-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1012 -----------NP--SNR-SLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1012 -----------~p--~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
.| |-. .+..++..+...|++.+|++.++++... -+-|......+.+.+...|.+.+|++.++.+.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 11 111 1223444566667777777777777654 23356666677777777777777777775555
Q ss_pred hCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1078 DKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1078 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
. +.|+ ..+....+.++...+++.+|.++.+.+.+.
T Consensus 478 ~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 478 S--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred h--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 4 3443 455556666666667777777666666653
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.4e-12 Score=135.70 Aligned_cols=357 Identities=14% Similarity=0.203 Sum_probs=247.1
Q ss_pred hHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHH
Q 000837 839 LFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVR 918 (1262)
Q Consensus 839 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 918 (1262)
+..++.+||.++|+--..+.|.+++++......+.+..+||.+|.+-+- ....+++.+|+.....||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 5677888999999998899999999998887788888899988876543 233788889999889999999999999
Q ss_pred HHHhcCChhhH----HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCCC----CHhhHHH
Q 000837 919 WMCMEGGVPWA----LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFH-VKRVLDELQE----NELLP----DEVTYNF 985 (1262)
Q Consensus 919 ~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----d~~~~~~ 985 (1262)
+..+.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++.. +.++| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999987764 5566777788888888888888888888777644 3444444332 22333 4456677
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHC----CCCCC---hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 000837 986 LIYGFSKHKDVSSSKYYIAAMVSK----GFNPS---NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAE 1058 (1262)
Q Consensus 986 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 1058 (1262)
.+..|.+..+.+-|.++..-+... -+.|+ ...|..+....|.....+.-...|+.|.-.-+.|++.+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 778888888888888776655532 12232 23455677788888888888888888887777788888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHcc-cCChh
Q 000837 1059 GLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSS---SYDSIIST-CNKLD 1134 (1262)
Q Consensus 1059 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~ll~~-~g~~~ 1134 (1262)
+....|.++-.-.++.++...|.. ++. +--++++..|......|+.. .+...... .-++.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght-----~r~-----------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT-----FRS-----------DLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh-----hhH-----------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 888888888777777777764422 111 12223344444433344322 22222221 22222
Q ss_pred HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHhHHHHH
Q 000837 1135 PAMD-LHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD----TPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1135 ~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
++.+ .-+++.+..+ .+...++++-.+.|.|++++|.+++....+.+- .|.-.....+++.-...++.-.|+.+
T Consensus 506 e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 2222 1233333233 455788899999999999999999999975432 34455566888888899999999999
Q ss_pred HHHHHHcC
Q 000837 1210 MQAMQQSG 1217 (1262)
Q Consensus 1210 ~~~~~~~~ 1217 (1262)
++-|...+
T Consensus 584 lQ~a~~~n 591 (625)
T KOG4422|consen 584 LQLASAFN 591 (625)
T ss_pred HHHHHHcC
Confidence 99997753
No 35
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6e-09 Score=119.80 Aligned_cols=857 Identities=12% Similarity=0.089 Sum_probs=488.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHh
Q 000837 220 LIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCR 299 (1262)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~ 299 (1262)
.+..|++.|++++++-+. .+.|..|+ |-.+++.+.+ -..+.+.++...|.... +...-++.++..+..
T Consensus 487 Vi~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~-----~~~~die~I~DlFme 554 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE-----EPLADIEQIVDLFME 554 (1666)
T ss_pred HHHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC-----CCcccHHHHHHHHHH
Confidence 334444444444444332 34577776 5567777766 67888888887776644 334456667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHH
Q 000837 300 DRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQE 379 (1262)
Q Consensus 300 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 379 (1262)
......+..++-..++..-+......+.++..-.. +-..-|..++..- --...-+-.+...|.+.|-..+|++.+..
T Consensus 555 ~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~-~aPqVADAILgN~--mFtHyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 555 LNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLV-HAPQVADAILGND--MFTHYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred HHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhc-cchHHHHHHHhcc--ccccccHHHHHHHHHhcchHHHHHHhccc
Confidence 77777777777666655433333444455543322 2233333333211 11122367788888889999999988766
Q ss_pred HHHCCCCCCHHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--
Q 000837 380 LEHSGFRPDEITFG----ILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR-- 453 (1262)
Q Consensus 380 m~~~g~~p~~~ty~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-- 453 (1262)
+.+- +-..+.-+ -.+-.|.-.-.++++.+.+..|+..+++.+..+.--+..-|...=-.+...++|+....-
T Consensus 632 l~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 632 LYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred HHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 5431 11111100 112344556678899999999999888888887777777777766667777777776652
Q ss_pred ---------CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCC
Q 000837 454 ---------GITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGF 524 (1262)
Q Consensus 454 ---------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1262)
++..|....-..|.+-|+.|++.+..++.++----++. . ++.+.-- .+.
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpE---r-----vKNfLke--------------AkL 767 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPE---R-----VKNFLKE--------------AKL 767 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHH---H-----HHHHHHh--------------ccc
Confidence 23345555566788999999999888877642111100 0 0000000 000
Q ss_pred CchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000837 525 SKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGL 604 (1262)
Q Consensus 525 p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 604 (1262)
+|... ++..+.+-+ +-.-+..|.-+.+..+=+++|-+-+ ++...+.+...|++.-
T Consensus 768 ~DqlP---LiiVCDRf~--------------------fVhdlvlYLyrnn~~kyIE~yVQkv--Nps~~p~VvG~LLD~d 822 (1666)
T KOG0985|consen 768 TDQLP---LIIVCDRFD--------------------FVHDLVLYLYRNNLQKYIEIYVQKV--NPSRTPQVVGALLDVD 822 (1666)
T ss_pred cccCc---eEEEecccc--------------------cHHHHHHHHHHhhHHHHHHHHHhhc--CCcccchhhhhhhcCC
Confidence 11100 111111111 1111112222333333333332211 1222233334444322
Q ss_pred HhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhH
Q 000837 605 CASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDL 684 (1262)
Q Consensus 605 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 684 (1262)
| -++.++-+-.... .....+-|+.-.-+.+++.--...++...+.|.. ++.++++|...|...++-.+-
T Consensus 823 C-----~E~~ik~Li~~v~-----gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~ 891 (1666)
T KOG0985|consen 823 C-----SEDFIKNLILSVR-----GQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER 891 (1666)
T ss_pred C-----cHHHHHHHHHHHh-----ccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH
Confidence 2 2222221111111 1122344566677888888888899999999988 999999999888865543321
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhh----cCCCChhHHHHHHHHHHhcCCcccHHHHHHH
Q 000837 685 HAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVS----CPCLRSDICYIFLEKLCVTGFSSNAHALVEE 760 (1262)
Q Consensus 685 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~ 760 (1262)
. +..+..--+..+.-||...++.-|.-.|++-... +.......+....+-+.
T Consensus 892 --f--------LkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv-------------- 947 (1666)
T KOG0985|consen 892 --F--------LKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLV-------------- 947 (1666)
T ss_pred --h--------cccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHH--------------
Confidence 0 1122222234455577666555443333221000 00000000111111111
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC--C
Q 000837 761 LLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNM--APCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ--P 836 (1262)
Q Consensus 761 ~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~ 836 (1262)
+ +.|...|..++.- .+ .--.++.++....++ ..|+.....-+.++...+-..+-+++++++.-.+ +
T Consensus 948 --~---R~D~~LW~~VL~e---~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F 1017 (1666)
T KOG0985|consen 948 --E---RSDPDLWAKVLNE---EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF 1017 (1666)
T ss_pred --h---ccChHHHHHHHhc---cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc
Confidence 1 1133333333210 00 011234444443332 2244555566778888888888888888875322 1
Q ss_pred CchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHH
Q 000837 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNL 916 (1262)
Q Consensus 837 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 916 (1262)
.-+...-|.|+-.-.+ -+.....+..+++-.-+. |+ +...+...+-+++|..+|+.. ..+....+.|
T Consensus 1018 se~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1018 SENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVL 1084 (1666)
T ss_pred ccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHH
Confidence 1122233444433333 345566677777665322 22 333445667788888888764 2344444444
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCCh
Q 000837 917 VRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDV 996 (1262)
Q Consensus 917 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 996 (1262)
+. ..+.+|.|.+.-+... .+..|..+..+-.+.|...+|++-|-+. -|...|.-++....+.|.+
T Consensus 1085 ie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred HH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcH
Confidence 43 3466777776655542 4567999999999999999998877543 3677899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 997 SSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQI 1076 (1262)
Q Consensus 997 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 1076 (1262)
++-..++.-..++.-+|.. -+.||-+|++.+++.+-.+++ ..|+......+.+-|...|.++.|.-+|...
T Consensus 1150 edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 9999998888876555543 356888999999887766554 3578888888889999999999988877654
Q ss_pred HhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 000837 1077 VDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWH 1156 (1262)
Q Consensus 1077 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1156 (1262)
. .|..|...+...|++..|...-++.. +..||..+..+|-+-++ =-+.+|....+-...+-+.
T Consensus 1221 S---------N~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~E--FrlAQiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1221 S---------NFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEE--FRLAQICGLNIIVHADELE 1283 (1666)
T ss_pred h---------hHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhh--hhHHHhcCceEEEehHhHH
Confidence 3 57778888888999998887776632 34455555444221111 1133444333344677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC------ChhhHHHHHH
Q 000837 1157 VLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSP------DFSTHWSLIS 1230 (1262)
Q Consensus 1157 ~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~~l~ 1230 (1262)
-++.-|...|-+++.+.+++..+-. -+....+|..|+-.|.+- ++++..+-++-...+=--| +..+.|.-+-
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999887643 144566666666555443 5566666666554431111 4456788888
Q ss_pred Hhhcccccccc
Q 000837 1231 NLRNSNDKDNN 1241 (1262)
Q Consensus 1231 ~l~~~~~~~~~ 1241 (1262)
.||...+.++.
T Consensus 1362 fLY~~y~eyDN 1372 (1666)
T KOG0985|consen 1362 FLYDKYEEYDN 1372 (1666)
T ss_pred HHHHhhhhhhH
Confidence 88886655543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=7.4e-12 Score=130.90 Aligned_cols=494 Identities=12% Similarity=0.057 Sum_probs=292.9
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHH-HHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHH----HHHHH
Q 000837 669 TTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCK-SLVECLCHKKLLKESLQLFECMLVSCPCLRSDIC----YIFLE 743 (1262)
Q Consensus 669 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~ 743 (1262)
..|..-|..+..+.+|+..++-+.+....|+.-... .+.+.+.+...+.+|+++|+.++..-|....... ..+..
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 344555666777889999999988888878765443 4556788889999999999988877666444332 22223
Q ss_pred HHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHH
Q 000837 744 KLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEK 823 (1262)
Q Consensus 744 ~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 823 (1262)
.+.+.|.++.|+..++...+. .|+-.+-..|+-.+..-|+-++..+.|..|......||..-|. +..
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~~---- 351 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KEK---- 351 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CCc----
Confidence 344455555555555554443 2333333334444444444555555555554433333322211 100
Q ss_pred HHHHHHHHhhcCCCchHHhHHHH-----HHHHhhcC--CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 000837 824 AVALREISLKEQPLLLFSFHSAF-----ISGFCVTG--KAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRE 896 (1262)
Q Consensus 824 A~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~ 896 (1262)
-.|+....+.- ++-..+.+ +.+.++-.--++..--+.||-.. - .+-..+
T Consensus 352 ------------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~---g---------~dwcle 407 (840)
T KOG2003|consen 352 ------------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA---G---------CDWCLE 407 (840)
T ss_pred ------------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc---c---------cHHHHH
Confidence 11222222211 11111111 11222222222222112222110 0 011111
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHH-h-cCCHHHHHHHHHHHHHC
Q 000837 897 LLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLM-S-SGNIFHVKRVLDELQEN 974 (1262)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~-~g~~~~A~~~~~~m~~~ 974 (1262)
.++.-....+. ...-..-.-.+.+.|+++.|++++..+.+.+...-...-|.|...+. + -.++.+|...-+.....
T Consensus 408 ~lk~s~~~~la--~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 408 SLKASQHAELA--IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHhhhhhhh--hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 11110000000 00011123457789999999999988877654433333444433333 2 34567777666655543
Q ss_pred CCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 000837 975 ELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQN 1054 (1262)
Q Consensus 975 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 1054 (1262)
. .-+......-.+.....|++++|.+.|++.+...-.-....|+ +.-.+...|++++|++.|-++..- +..+..+..
T Consensus 486 d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 486 D-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred c-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 1 1122222222233456799999999999998743222222233 222567789999999999887654 344677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---c
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---C 1130 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~ 1130 (1262)
.+.+.|-...+...|++++.+... +.| |+..+..|...|-+.|+..+|.+.+-.--.. ++-+..+..++-.. .
T Consensus 563 qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence 899999999999999999988776 455 5889999999999999999999887654443 23345555544443 5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 000837 1131 NKLDPAMDLHAEMMARDLKPSMNTWHVLVHKL-CQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1131 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
.-++.|+.+|++..- +.|+..-|..++..| .+.|+++.|.++++..... ++.|..+...|++.+...|- .+|.++
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key 715 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEY 715 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHH
Confidence 558899999999876 889999998777665 5689999999999999865 78889999999988887776 334444
Q ss_pred HH
Q 000837 1210 MQ 1211 (1262)
Q Consensus 1210 ~~ 1211 (1262)
-.
T Consensus 716 ~~ 717 (840)
T KOG2003|consen 716 AD 717 (840)
T ss_pred HH
Confidence 33
No 37
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.2e-08 Score=114.01 Aligned_cols=848 Identities=13% Similarity=0.142 Sum_probs=409.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCC
Q 000837 202 LAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNN 281 (1262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~ 281 (1262)
..|..++..+.-...|..-...+..+|++++|-.+-...++ |+-.+..|-+.+=..=...|...--+..|.-++..|.
T Consensus 348 l~~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGk- 425 (1666)
T KOG0985|consen 348 LRLAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGK- 425 (1666)
T ss_pred HHhhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhccc-
Confidence 33444444455556677777778889999999877766554 2333445555444444445666666666666666663
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHH
Q 000837 282 LTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRII 361 (1262)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li 361 (1262)
.|..---.+.+--..+|+.+-...++.+ +...++-=+.-+.+.-+..-|+++|.+.+++ +.++
T Consensus 426 ---LNk~ETLEL~RpVL~Q~RkqLlekWl~E--------dKLeCSEELGDlVK~~d~~lAL~iYlrAnvp------~KVi 488 (1666)
T KOG0985|consen 426 ---LNKYETLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKPYDTTLALSIYLRANVP------AKVI 488 (1666)
T ss_pred ---ccHHHHHHHHHHHHhhhHHHHHHHHhhh--------hhhhhhHHhcCccccCCchHHHHHHHHcCCc------HHHH
Confidence 2332222233333344444433333322 1111211111112222334455555555322 3456
Q ss_pred HHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 000837 362 HTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSK 441 (1262)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~ 441 (1262)
.+|+..|.++++.-+.. +.|..|| |-.+++...+ -..+.|.++...|.+.. |...-++.+.+.+...+.+.
T Consensus 489 ~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 489 QCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred HHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhh
Confidence 67777777777665543 4577777 3344555544 66777777777666542 12223444444444444444
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccc
Q 000837 442 HAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDND 521 (1262)
Q Consensus 442 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1262)
.+...+-...+. -.|+..... .++++.-...++. +..+.+..++..
T Consensus 560 q~TSFLLdaLK~-~~Pd~g~LQ---------------TrLLE~NL~~aPq--------VADAILgN~mFt---------- 605 (1666)
T KOG0985|consen 560 QCTSFLLDALKL-NSPDEGHLQ---------------TRLLEMNLVHAPQ--------VADAILGNDMFT---------- 605 (1666)
T ss_pred hhHHHHHHHhcC-CChhhhhHH---------------HHHHHHHhccchH--------HHHHHHhccccc----------
Confidence 444444333322 122222111 1122221111111 000111111000
Q ss_pred cCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 000837 522 MGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN-----FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSV 596 (1262)
Q Consensus 522 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 596 (1262)
..-...+...+-+.|-...|.+.+.++.+-.-... --.-+..|...-.++.+.++++.|...++..+..+
T Consensus 606 -----HyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi 680 (1666)
T KOG0985|consen 606 -----HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQI 680 (1666)
T ss_pred -----cccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHH
Confidence 00122333444445555555544443322110000 00112234445556677777777776666666666
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHhhhhc-----------CCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCH
Q 000837 597 FSALVKGLCASRSHIKACTGLLEKMPKLA-----------NKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIEN 665 (1262)
Q Consensus 597 ~~~li~~~~~~~~~~~~a~~l~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 665 (1262)
...+..-|+..-+ .+..+++|+...... ..-|+.+--..|++-|+.|.+.+..++-++ .++.
T Consensus 681 ~VQvatky~eqlg-~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre---sn~Y--- 753 (1666)
T KOG0985|consen 681 VVQVATKYHEQLG-AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE---SNCY--- 753 (1666)
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc---cccC---
Confidence 6666666655554 555555555543211 111333333344444444444444333211 1111
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-----CcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHH
Q 000837 666 ESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLP-----GLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYI 740 (1262)
Q Consensus 666 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 740 (1262)
+++....++.+..-.+-.| |...+..=+-.|.-.++..+-++.|-+ +.+|...+.+...
T Consensus 754 --------------dpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 754 --------------DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSRTPQVVGA 817 (1666)
T ss_pred --------------CHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcccchhhhh
Confidence 1111122222221111112 222222222233333444444444432 2244433333333
Q ss_pred HHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCC
Q 000837 741 FLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGR 820 (1262)
Q Consensus 741 ~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 820 (1262)
++. ....++..+-+-......+ ....|..-.-+.++..--..+++.....|.. +..+++.|...|...++
T Consensus 818 LLD----~dC~E~~ik~Li~~v~gq~-----~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 818 LLD----VDCSEDFIKNLILSVRGQF-----PVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNN 887 (1666)
T ss_pred hhc----CCCcHHHHHHHHHHHhccC-----ChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCC
Confidence 322 2222222222221111111 2233445555667777777777777777754 67788888777775544
Q ss_pred HHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHH----CCC----------------CCCHHhHHH
Q 000837 821 LEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLS----QGM----------------LLEDEVYNM 880 (1262)
Q Consensus 821 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~----------------~pd~~t~~~ 880 (1262)
-.+-. .+.++.-| +..+.-||...++--|.-.+++-.. .++ ..|...|..
T Consensus 888 nPE~f------LkeN~yYD----s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~ 957 (1666)
T KOG0985|consen 888 NPERF------LKENPYYD----SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAK 957 (1666)
T ss_pred ChHHh------cccCCcch----hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHH
Confidence 32211 11111111 1122223333222211111111000 000 012223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCc--cChhhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCcchHHHHHHHHH
Q 000837 881 LIQGHCEANNLRKVRELLSAMIRKRLS--LSISSYRNLVRWMCMEGGVPWALNLKELMLGQN--KSHNLIIFNILVFHLM 956 (1262)
Q Consensus 881 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~ 956 (1262)
++. ..+ .--.++.++.++.+++ .|+.-...-+.++...+-..+-+++++++.-.+ ++.+...-|.|+-.-.
T Consensus 958 VL~---e~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi 1032 (1666)
T KOG0985|consen 958 VLN---EEN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI 1032 (1666)
T ss_pred HHh---ccC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh
Confidence 221 000 0112333444443332 344455556777777777788888888776432 2223334444444433
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHH
Q 000837 957 SSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLE 1036 (1262)
Q Consensus 957 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 1036 (1262)
+ -+..+..+..+++...+. |+ +...+...+-+++|..+|++.- .+......|+. .-+.+|.|.+
T Consensus 1033 k-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1033 K-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred h-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHH
Confidence 3 344566666666654321 22 2233445666788888887642 23333333332 3467777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 000837 1037 LSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGS 1116 (1262)
Q Consensus 1037 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 1116 (1262)
+-+... .+.+|..+..+-...|.+.+|++-|-++- |+..|...+....+.|.|++-++++....++.-
T Consensus 1097 fAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1097 FAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 765542 46789999999889999988887776542 566888889999999999999998888888776
Q ss_pred CCCHHHHHHHHcc-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000837 1117 TPNSSSYDSIIST-CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVN 1195 (1262)
Q Consensus 1117 ~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~ 1195 (1262)
+|...+-..+..+ .+++.+-.+ .+ ..||......+++-|+..|.++.|.-++...- .|..|..
T Consensus 1165 E~~id~eLi~AyAkt~rl~elE~----fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~ 1228 (1666)
T KOG0985|consen 1165 EPYIDSELIFAYAKTNRLTELEE----FI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLAS 1228 (1666)
T ss_pred CccchHHHHHHHHHhchHHHHHH----Hh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHH
Confidence 7777665444444 555444322 22 45777778888888888888888877666542 2444545
Q ss_pred HHHhcCCHhHHHH
Q 000837 1196 RYSLENNLGKASE 1208 (1262)
Q Consensus 1196 ~~~~~g~~~~A~~ 1208 (1262)
.+...|+++.|..
T Consensus 1229 TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.1e-11 Score=129.73 Aligned_cols=466 Identities=13% Similarity=0.109 Sum_probs=291.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcH-HhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH----hHHHH
Q 000837 772 AYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVS-VSLIPQLFRTGRLEKAVALREISLKEQPLLLFS----FHSAF 846 (1262)
Q Consensus 772 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l 846 (1262)
....|..-|.......+|+..++-+++..+.|+...+ ..+...+.+..++.+|++++...+..-|..+.. ..+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344555666667777777777777766666665433 234556677777888888877776664444332 33344
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccC------------hhhHH
Q 000837 847 ISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLS------------ISSYR 914 (1262)
Q Consensus 847 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------------~~~~~ 914 (1262)
...+.+.|.+++|+..|+...+. .|+..+-..|+-++...|+-++..+.|..|+..-..++ ....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 44567778888888888877763 36666544455555567777888888877776422222 11111
Q ss_pred H-----HHHHHHhcC--ChhhHHHHHHHHHhCCCCCCcch---H------------------HHHHHHHHhcCCHHHHHH
Q 000837 915 N-----LVRWMCMEG--GVPWALNLKELMLGQNKSHNLII---F------------------NILVFHLMSSGNIFHVKR 966 (1262)
Q Consensus 915 ~-----li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~~~g~~~~A~~ 966 (1262)
. .+.-+-+.+ +.++++-.-.++...-+.|+-.. | -.-.-.|.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 1 112222221 11222222222222212221110 0 011234788999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhc--CCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 000837 967 VLDELQENELLPDEVTYNFLIYGFSK--HKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLK 1044 (1262)
Q Consensus 967 ~~~~m~~~g~~pd~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 1044 (1262)
+++-+.++.-+.-...-+.|...+.- -.++..|.++-+..+... +-+......-.+.-...|++++|.+.+++.+..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 99988877544333333333333322 236777777777665421 112222222223344579999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 000837 1045 GLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYD 1124 (1262)
Q Consensus 1045 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1124 (1262)
...-....|| +.-.+-..|+.++|++.|-++..- +.-+..++..+...|....++.+|++++-..... ++.|+....
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 3221222333 233467789999999999887652 2235778888899999999999999999776553 233444444
Q ss_pred HHHcc---cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 000837 1125 SIIST---CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNR-YSL 1199 (1262)
Q Consensus 1125 ~ll~~---~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~-~~~ 1199 (1262)
.+-.. .|+-.+|.+.+-.--. .-| +..+..+|+.-|....-++.|+..|+++.- +.|+.+-|..++.. +.+
T Consensus 597 kl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 44333 7888888886544432 445 888999999999999999999999999875 69999999976666 567
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhccccccccccchhhhh
Q 000837 1200 ENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLS 1249 (1262)
Q Consensus 1200 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1249 (1262)
.|++++|.++|+..... .|.+-.+..+|..+..-.|.....+....|.
T Consensus 673 sgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl~d~key~~kle 720 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGLKDAKEYADKLE 720 (840)
T ss_pred cccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccchhHHHHHHHHH
Confidence 89999999999999884 6777767777777766666555544444443
No 39
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.57 E-value=9.2e-08 Score=106.46 Aligned_cols=164 Identities=18% Similarity=0.206 Sum_probs=107.5
Q ss_pred HHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 000837 530 FDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRS 609 (1262)
Q Consensus 530 ~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 609 (1262)
|-.+...|...|+++.|.++|.+.- -++.-|.+|.+.|++..|.++-.+.. |++.....|.+-..-+-..|+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence 4444555555566666665554320 15567888999999999988877663 344455566666666667777
Q ss_pred chHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHH
Q 000837 610 HIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWD 689 (1262)
Q Consensus 610 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 689 (1262)
+.+|.+++-.+. .|+ .-|.+|-+.|..+..+++.++--.. .-..|...+..-+-..|+...|..-|-
T Consensus 840 -f~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 840 -FAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred -hhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 888887765442 222 3467788888888888777654321 234566677778888899988888775
Q ss_pred HHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHH
Q 000837 690 IAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLF 723 (1262)
Q Consensus 690 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 723 (1262)
+.. .|..-+++|-..+.+++|.++-
T Consensus 907 ea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 907 EAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 543 3556677777777777776553
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.8e-09 Score=113.16 Aligned_cols=431 Identities=11% Similarity=0.090 Sum_probs=262.4
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHH
Q 000837 677 KKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHA 756 (1262)
Q Consensus 677 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~ 756 (1262)
..+++..|.++|+.....+ ..+...|...+.+=.++..+..|..+++.++..-|.
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR------------------------ 139 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR------------------------ 139 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch------------------------
Confidence 4556666777777766544 345555666666666666666666666665543332
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 000837 757 LVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQP 836 (1262)
Q Consensus 757 ~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 836 (1262)
-...|.-.+..--..|++..|.++|+...+ ..|+...+.+.|+.=.+-+.++.|..++++..--
T Consensus 140 ------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~-- 203 (677)
T KOG1915|consen 140 ------------VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV-- 203 (677)
T ss_pred ------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--
Confidence 223455555666678899999999988876 4688889999999888999999999999987653
Q ss_pred CchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCccC-hh
Q 000837 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHC----EANNLRKVRELLSAMIRKRLSLS-IS 911 (1262)
Q Consensus 837 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~-~~ 911 (1262)
.|++.+|......-.+.|+...|..+|....+. .-|...-..+..+++ ....++.|.-+|+-.++.=++-. ..
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 478888888888888899999999999888763 223333333333443 35667888888888877622211 23
Q ss_pred hHHHHHHHHHhcCChhhHHHH--------HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---
Q 000837 912 SYRNLVRWMCMEGGVPWALNL--------KELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDE--- 980 (1262)
Q Consensus 912 ~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--- 980 (1262)
.|..+...--+-|+.....+. ++.+.+.+ +-|-.+|--.++..-..|+.+...++|++.+.. ++|-.
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 344444333344554443332 22333321 225556666666666677777777777777764 33421
Q ss_pred ----hhHHH---HHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCC
Q 000837 981 ----VTYNF---LIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLC----EVGELGKSLELSQEMRLKGLVHD 1049 (1262)
Q Consensus 981 ----~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~g~~~~ 1049 (1262)
..|.- .+..=....|++.+.++|+..++. ++-...||..+--.|+ ++.++..|.+++...+. ..|.
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK 436 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCc
Confidence 11111 111112456677777777777762 2334455554433333 45666777777666553 4566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 000837 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKG-STPNSSSYDSII 1127 (1262)
Q Consensus 1050 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll 1127 (1262)
..++...|..=.+.++++....++++.++- .| +..+|......-...|+.+.|..+|+..+... +......+...|
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 667777777666777777777777777763 33 46666666666666777777777777766541 111222333444
Q ss_pred cc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 1128 ST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLV 1159 (1262)
Q Consensus 1128 ~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 1159 (1262)
.. .|.++.|.++|+++++ ..+...+|..++
T Consensus 515 dFEi~~~E~ekaR~LYerlL~--rt~h~kvWisFA 547 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLD--RTQHVKVWISFA 547 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHH--hcccchHHHhHH
Confidence 43 6666666666666665 333344454443
No 41
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=1.7e-09 Score=122.36 Aligned_cols=509 Identities=18% Similarity=0.097 Sum_probs=290.7
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHH---HhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCccc
Q 000837 677 KKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVEC---LCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSN 753 (1262)
Q Consensus 677 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 753 (1262)
+.+...++..-+.....++|..+..++..+..+ |+..++.+++ .+-..+. ..+......++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~--------------es~i~Re~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIE--------------ESLIPRENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHH--------------hhccccccHHH
Confidence 355667777777777777777777776665544 3444555554 1111111 11222222333
Q ss_pred HHH----HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHH
Q 000837 754 AHA----LVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALRE 829 (1262)
Q Consensus 754 a~~----~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 829 (1262)
+.- ++..+....+..|...|..+.-++...|+++.+.+.|++....- .-..+.|..+...|...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 322 22233334455678888888888888888888888888876532 2345677777777788888888888887
Q ss_pred HHhhcCCCchHHhHHHHHHH--HhhcCCHHHHHHHHHHHHHC--CC--CCCHHhHHHHHHHHHhc----C-------CHH
Q 000837 830 ISLKEQPLLLFSFHSAFISG--FCVTGKAEEASKLFRDMLSQ--GM--LLEDEVYNMLIQGHCEA----N-------NLR 892 (1262)
Q Consensus 830 ~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~--g~--~pd~~t~~~ll~~~~~~----g-------~~~ 892 (1262)
......+.|+..+--.++.. +.+.+..++++++-.+.... +. ...+..|..+.-+|... . ...
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 77665544543333333332 22456677777776666551 11 11233454444444321 1 134
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 893 KVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQ 972 (1262)
Q Consensus 893 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 972 (1262)
++.+.+++.++.+.. |+.+...+.--|+..++++.|.+...+..+.+...++..|..+.-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 556666666665433 3333333444566677777777777777777666677777777777777777777777776655
Q ss_pred HCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCH
Q 000837 973 ENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLK-G-LVHDS 1050 (1262)
Q Consensus 973 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g-~~~~~ 1050 (1262)
+. ..-|......-+..-...++.++|+..+..++.- --+.... ...++-....+....+.-. + ..-..
T Consensus 541 ~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 541 EE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccc
Confidence 43 0011111111111112346666666666665541 0000000 0111111111111111100 0 00012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 000837 1051 IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP--D------TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS 1122 (1262)
Q Consensus 1051 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 1122 (1262)
.++..+.......+. .+..-.. +..-...| + ...|......+.+.+..++|.-.+.+..+. .|-...
T Consensus 611 s~sr~ls~l~a~~~~--~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~ 685 (799)
T KOG4162|consen 611 STSRYLSSLVASQLK--SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSAS 685 (799)
T ss_pred hhhHHHHHHHHhhhh--hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHH
Confidence 233333222221111 1100000 11111122 2 124555667788899999999888887764 333322
Q ss_pred -HHH--HHcc-cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHH
Q 000837 1123 -YDS--IIST-CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAER--LLISMVQLGDTPTQEMYSSVVN 1195 (1262)
Q Consensus 1123 -~~~--ll~~-~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--l~~~~~~~~~~p~~~~~~~l~~ 1195 (1262)
|.. .... .|.+++|.+.|..... +.| ++.+...++.++.+.|+-.-|.. ++..+++.+ +.++..|..++.
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 111 1111 8999999999999886 788 56788999999999998888887 999999864 667999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1196 RYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1196 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
++.+.|+.++|.+.|+...+ ++++.+
T Consensus 763 v~k~~Gd~~~Aaecf~aa~q--Le~S~P 788 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQ--LEESNP 788 (799)
T ss_pred HHHHccchHHHHHHHHHHHh--hccCCC
Confidence 99999999999999999988 565544
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.4e-10 Score=123.58 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=145.1
Q ss_pred HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchH
Q 000837 638 QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLK 717 (1262)
Q Consensus 638 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 717 (1262)
..+.-.|+.-.|.+.|+..+...+.++. .|..+...|....+.++..+.|+...+.+ +.++.+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 3455678888899999998887665333 37777777888888888888888887754 236777777777777888899
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 000837 718 ESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSML 797 (1262)
Q Consensus 718 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~ 797 (1262)
+|+.-|++.+..+|. +...|-.+.-+..+.++++++...|++..
T Consensus 412 ~A~aDF~Kai~L~pe------------------------------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k 455 (606)
T KOG0547|consen 412 EAIADFQKAISLDPE------------------------------------NAYAYIQLCCALYRQHKIAESMKTFEEAK 455 (606)
T ss_pred HHHHHHHHHhhcChh------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877776 45555555555556666777777777666
Q ss_pred hCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC-------chHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 000837 798 DKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPL-------LLFSFHSAFISGFCVTGKAEEASKLFRDMLSQG 870 (1262)
Q Consensus 798 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 870 (1262)
++ ++..+.+|+.....+...+++++|.+.|+...+..+. +.......++..-. .+++..|..++++..+.+
T Consensus 456 kk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 456 KK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD 533 (606)
T ss_pred Hh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC
Confidence 54 3445566666666777777777777777766554332 11111222222222 256666666666666632
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 871 MLLEDEVYNMLIQGHCEANNLRKVRELLSAMI 902 (1262)
Q Consensus 871 ~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 902 (1262)
.+ ....|-.|.+.-.+.|+.++|+++|+...
T Consensus 534 pk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 534 PK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 23456666666666666666666666544
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4.5e-09 Score=111.64 Aligned_cols=439 Identities=11% Similarity=0.095 Sum_probs=327.6
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCc-ccHHHHH
Q 000837 629 DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGL-EDCKSLV 707 (1262)
Q Consensus 629 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li 707 (1262)
+...|-...+--...+++..|..+|++.+.-... +...|...+.+=.++..+..|..+|+..+.. .|.+ ..|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 6667776666666788999999999999987643 7778888899889999999999999998763 3432 2333334
Q ss_pred HHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 000837 708 ECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFS 787 (1262)
Q Consensus 708 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~ 787 (1262)
.+=-..|++..|.++|++-. + ..|+...|.+.|+.-.+.+.++
T Consensus 149 ymEE~LgNi~gaRqiferW~-----------------------------------~--w~P~eqaW~sfI~fElRykeie 191 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWM-----------------------------------E--WEPDEQAWLSFIKFELRYKEIE 191 (677)
T ss_pred HHHHHhcccHHHHHHHHHHH-----------------------------------c--CCCcHHHHHHHHHHHHHhhHHH
Confidence 44445566666666666543 2 4789999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC--chHHhHHHHHHHHhhcCCHHHHHHHHHH
Q 000837 788 VAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPL--LLFSFHSAFISGFCVTGKAEEASKLFRD 865 (1262)
Q Consensus 788 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 865 (1262)
.|..+++..+- +.|++..|......=.++|+...|..+|+...+.-.. .+...+.+....-.++..++.|.-+|+-
T Consensus 192 raR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 192 RARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 3588999998888889999999999999988654211 2345566666666678889999999999
Q ss_pred HHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 000837 866 MLSQGMLLED-EVYNMLIQGHCEANNLRKVREL--------LSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELM 936 (1262)
Q Consensus 866 m~~~g~~pd~-~t~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 936 (1262)
.++.-.+... ..|.....-=-+-|+.....+. ++.+++.+ +.|-.+|-..++.....|+.+...++|+..
T Consensus 270 Ald~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 270 ALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9884322222 2333333222334554444333 33444443 357778888888888899999999999999
Q ss_pred HhCCCCCC-cchHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHh----hcCCChhHHHHHH
Q 000837 937 LGQNKSHN-LIIFNILVFHL--------MSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGF----SKHKDVSSSKYYI 1003 (1262)
Q Consensus 937 ~~~~~~~~-~~~~~~li~~~--------~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~----~~~g~~~~A~~~~ 1003 (1262)
...-++.. -..|...|-.. ....+.+.+.++|+..++. ++-...||.-+--.| .++.++..|.+++
T Consensus 349 Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 349 IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 87633322 23344443322 3468899999999999884 444567776654444 4668899999999
Q ss_pred HHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C
Q 000837 1004 AAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDL-V 1082 (1262)
Q Consensus 1004 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~ 1082 (1262)
...+- ..|...+|...|..-.+.+++|.+..+++..++.+ +.+..+|.-.+..=...|+.+.|..+|+-++++.. .
T Consensus 428 G~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 428 GNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred HHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 88764 68999999999999999999999999999999963 33688999888888889999999999999987521 1
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1083 PDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1083 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
.-...|.+.|..-...|..++|..+++.+++.
T Consensus 505 mpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 505 MPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 12456777777778899999999999999986
No 44
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.50 E-value=1.2e-07 Score=110.09 Aligned_cols=584 Identities=11% Similarity=0.005 Sum_probs=308.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHH
Q 000837 645 LVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFE 724 (1262)
Q Consensus 645 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 724 (1262)
+...|+..|-+..+..+. =...|..|...|+..-+...|.+.|+...+.+ ..+........+.|.+..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 366677777666665433 34567778888877777778888888877654 2366677778888888888888877743
Q ss_pred HHHhhcCC-CChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 000837 725 CMLVSCPC-LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAP 803 (1262)
Q Consensus 725 ~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 803 (1262)
..-+..|. .....|-.....+.+.++...+..-++...+. -+-|...|..++.+|...|++..|++.|......+ |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 33332222 11222333333344555666666666665544 24467788888889999999999999888876543 3
Q ss_pred Ch-hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC------chHHhHHHHHHHHhhcCCHHHHHHHHHHHH-------HC
Q 000837 804 CL-DVSVSLIPQLFRTGRLEKAVALREISLKEQPL------LLFSFHSAFISGFCVTGKAEEASKLFRDML-------SQ 869 (1262)
Q Consensus 804 ~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~ 869 (1262)
+. ..--.....-+..|++.+|...+..+...... .-..++-.+...+...|-...|...|++-+ ..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22 22222333456778888888887776543110 011222222222222232333333333222 21
Q ss_pred CCCCCHHhHHHHHHHHHhcCCH------HHHHHHHHH-HHHCC--------------------CccChhhHHHHHHHHHh
Q 000837 870 GMLLEDEVYNMLIQGHCEANNL------RKVRELLSA-MIRKR--------------------LSLSISSYRNLVRWMCM 922 (1262)
Q Consensus 870 g~~pd~~t~~~ll~~~~~~g~~------~~a~~~~~~-~~~~~--------------------~~~~~~~~~~li~~~~~ 922 (1262)
....+...|-.+.++|.-.-.. .....++.. ....+ +..+...|..|+..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 1111222222222221100000 000000100 11111 11123333334333332
Q ss_pred ----cC----ChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCC
Q 000837 923 ----EG----GVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHK 994 (1262)
Q Consensus 923 ----~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 994 (1262)
.+ +...|+..+.+..+. ...+..+||.|.-. ..-|++.-|.-.|-+-... .+....+|..+...+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecc
Confidence 11 123455556555443 12255666666554 4446666665555544433 1235567777777777888
Q ss_pred ChhHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChhHHHHHHHH--HHH--cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000837 995 DVSSSKYYIAAMVSKGFNPS-NRSLRSVISCLCEVGELGKSLELSQE--MRL--KGLVHDSIVQNAIAEGLLSRGKLQEA 1069 (1262)
Q Consensus 995 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~--~~~--~g~~~~~~~~~~l~~~~~~~g~~~~A 1069 (1262)
+++.|...|...+. +.|+ ...|-....+....|+.-++..+|.. ... .|--++..-|-.-.......|+.++-
T Consensus 865 d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 88999888888877 4553 34444444455567777777777775 222 23344444444444445566666655
Q ss_pred HHHHHHHHhC---------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHcccCChhHHHHH
Q 000837 1070 EHFLDQIVDK---------DLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDSIISTCNKLDPAMDL 1139 (1262)
Q Consensus 1070 ~~~~~~m~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~g~~~~A~~~ 1139 (1262)
+...+.+... +.+.+...|.......-..+.+..|.++..+++.- ..+-+..+|+......|++.-+..-
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 5544444321 22324677777777777778888888777765442 1133444444333223333333333
Q ss_pred HHHHHH-CCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 000837 1140 HAEMMA-RDLKPSMNTWHVLV--HKLCQEGRTTEAERLLISMVQLGD-TPT-QEMYSSVVNRYSLENNLGKASELMQAMQ 1214 (1262)
Q Consensus 1140 ~~~~~~-~~~~p~~~~~~~l~--~~~~~~g~~~~A~~l~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1214 (1262)
|++... .+..|-..-=.... -..+-.|+++++.+.|+++....- ..+ ......+++.....+..+.|...+-+..
T Consensus 1023 fe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1023 FESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 333322 12222111001111 112456888888888888886311 111 3444566666777778888888777777
Q ss_pred HcCCCCChhhHHHHHHHhhccccccc
Q 000837 1215 QSGYSPDFSTHWSLISNLRNSNDKDN 1240 (1262)
Q Consensus 1215 ~~~~~p~~~~~~~~l~~l~~~~~~~~ 1240 (1262)
. ..|....+...|..++-....+.
T Consensus 1103 ~--ls~~~~~sll~L~A~~ild~da~ 1126 (1238)
T KOG1127|consen 1103 S--LSKVQASSLLPLPAVYILDADAH 1126 (1238)
T ss_pred H--hCccchhhHHHHHHHHHHhhhhh
Confidence 6 45555556666777766554443
No 45
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.49 E-value=7e-07 Score=103.99 Aligned_cols=662 Identities=13% Similarity=0.029 Sum_probs=388.8
Q ss_pred CHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHH
Q 000837 542 DLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLE 619 (1262)
Q Consensus 542 ~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~ 619 (1262)
+...+...|-+.++..+... |..|...|+...+...|.++|++..+... .+...+....+.|+.... ++.|....-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~-we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEEST-WEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhcccc-HHHHHHHHH
Confidence 36677777777766655444 99999999998899999999999876422 245567778888888888 898888744
Q ss_pred HhhhhcCCC-ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC
Q 000837 620 KMPKLANKL-DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLP 698 (1262)
Q Consensus 620 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 698 (1262)
...+..+.. -...|....-.|.+.++...|+.-|+...+..++ |...|..++.+|...|++..|.++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 333322211 2344555556678899999999999999998776 8889999999999999999999999887763 35
Q ss_pred CcccHHHH--HHHHhhhCchHhHHHHHHHHHhhcCC------CChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCCh
Q 000837 699 GLEDCKSL--VECLCHKKLLKESLQLFECMLVSCPC------LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQ 770 (1262)
Q Consensus 699 ~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~ 770 (1262)
+. +|... .-..|..|++.+|+..+..++..... .-...+......+..+|....+...++.-++.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~------ 700 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES------ 700 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH------
Confidence 43 22222 23467889999999998887653221 11123333344455566666666666554332
Q ss_pred hhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCH---H---HHHHHHHHHhhcCCCchH
Q 000837 771 MAYSHLIRGLCKE----KKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRL---E---KAVALREISLKEQPLLLF 840 (1262)
Q Consensus 771 ~~~~~li~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~ 840 (1262)
..+.++...+.. --...|..+|-+.. .+ .|+......+..-....+.. | -+.+.+-.-.+ ...+.
T Consensus 701 -f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~ 775 (1238)
T KOG1127|consen 701 -FIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHM 775 (1238)
T ss_pred -HHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhcc
Confidence 111111111100 00123333343332 11 23333222222222222222 1 01111111111 11234
Q ss_pred HhHHHHHHHHhh----c----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhh
Q 000837 841 SFHSAFISGFCV----T----GKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISS 912 (1262)
Q Consensus 841 ~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 912 (1262)
.+|..++..|.+ . .+...|+..+++..+..- .+..+|+.|.-. ...|++.-+...|-.-.... +.+..+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 556666555544 1 223467778887766321 245566665544 66688888877776665553 335667
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--C--CCCCCHhhHHHHHH
Q 000837 913 YRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQE--N--ELLPDEVTYNFLIY 988 (1262)
Q Consensus 913 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~--g~~pd~~~~~~li~ 988 (1262)
|..+.-.+.+..+++-|...|.......+ .+...|--........|+.-++..+|..-.+ . |--|+..-|.....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 88888888899999999999998887632 2677777777777778988888888876322 1 22344333333333
Q ss_pred HhhcCCChhHHHHHHHHHHHC---------CCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHH----
Q 000837 989 GFSKHKDVSSSKYYIAAMVSK---------GFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLK-GLVHDSIVQN---- 1054 (1262)
Q Consensus 989 ~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~---- 1054 (1262)
-....|+.++-+...+++... +.+.+...|.......-+.+.+.+|.+....++.. ...-+...|+
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 445566666554444433321 33445667777777777777777777776654431 0122344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHH--HHcc--
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDS--IIST-- 1129 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~--ll~~-- 1129 (1262)
.....++..|.++.|..-+...... .+.....+-+ +..-.|+++++.+.|+++... +-..+.+...+ ++..
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 3344555666666555444332211 1111111111 113478999999999998874 22333222211 1122
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCCHh
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL---G--DTPTQEMYSSVVNRYSLENNLG 1204 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~---~--~~p~~~~~~~l~~~~~~~g~~~ 1204 (1262)
.+.-+.|...+-+.... -.|+..+...|.-.+.-..+-.....+.+++.+. . ..|.+.+ .--.|...|+-.
T Consensus 1088 ~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll---~e~i~~~~~r~~ 1163 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLL---KELIYALQGRSV 1163 (1238)
T ss_pred cccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHH---HHHHHHHhhhhH
Confidence 67778888777666651 3456666666666655444444333333433321 1 1122222 223477889988
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1205 KASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1205 ~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
...+.+++..- +.|.++..|++|..=|.
T Consensus 1164 ~vk~~~qr~~h--~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1164 AVKKQIQRAVH--SNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 89999999877 79999999999996333
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.4e-09 Score=115.55 Aligned_cols=382 Identities=11% Similarity=0.043 Sum_probs=221.5
Q ss_pred CCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhH--
Q 000837 801 MAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVY-- 878 (1262)
Q Consensus 801 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-- 878 (1262)
..-|...+......+-+.|....|+..|.......|- ...+|..|.... .+.+.+. .+.. +...|...+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHHH
Confidence 3445555555566667778888888888777654332 344444433322 2222221 1111 121111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CcchHHHHHHHHH
Q 000837 879 NMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSH--NLIIFNILVFHLM 956 (1262)
Q Consensus 879 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 956 (1262)
-.+..++....+.+++.+-.......|++-+...-+....+.....++|.|+.+|+++.+.++-. |..+|...+- .
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 12334555566777777777777777776666655666666667777777777777777763221 3444444432 2
Q ss_pred hcCCHHHHHHHHH-HHHH-CCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChhH
Q 000837 957 SSGNIFHVKRVLD-ELQE-NELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPS-NRSLRSVISCLCEVGELGK 1033 (1262)
Q Consensus 957 ~~g~~~~A~~~~~-~m~~-~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 1033 (1262)
+..+-. +..+. .... .... ..|..++.+-|+-.++.++|..+|++.++. .|. ...|+.+..-|....+...
T Consensus 309 ~~~~sk--Ls~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HhhhHH--HHHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHH
Confidence 222111 11111 1111 1122 234455555566666667777777776663 333 3344555556666667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1034 SLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1034 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
|++-++.+++- .+-|-..|..|.++|.-.+.+.=|+-.|+++.+ +.| |...|.+|..+|.+.++.++|++.|....
T Consensus 383 Ai~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 383 AIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777766664 233566666677777777777777777776666 344 36667777777777777777777666665
Q ss_pred hCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-C
Q 000837 1113 KKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL----GD-TP-T 1186 (1262)
Q Consensus 1113 ~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~----~~-~p-~ 1186 (1262)
..| ..+...+..|+..|-+.++.++|.+.+++-++. |. .| .
T Consensus 460 ~~~---------------------------------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 460 LLG---------------------------------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred hcc---------------------------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 543 124456778888888888888888888777652 22 22 1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcccc
Q 000837 1187 QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSND 1237 (1262)
Q Consensus 1187 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 1237 (1262)
..+..-|..-+.+.+++++|..+...... ..+.-+..-.+++.+.+...
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLK--GETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhc--CCchHHHHHHHHHHHHHhcC
Confidence 23333455667788888888887777666 37777778888887776543
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.3e-10 Score=120.85 Aligned_cols=416 Identities=12% Similarity=0.029 Sum_probs=254.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHh
Q 000837 773 YSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPC-LDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFC 851 (1262)
Q Consensus 773 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 851 (1262)
+.....-|.+.|++++|+++|.+.++. .|+ +..|.....+|...|+|++..+.-...++.+|. -+.++..=..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 444556777889999999999998875 456 677888888889999999998888888776554 3444555566777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--CccChhhHHHHHHHHHhcCChhh
Q 000837 852 VTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRK-R--LSLSISSYRNLVRWMCMEGGVPW 928 (1262)
Q Consensus 852 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~--~~~~~~~~~~li~~~~~~g~~~~ 928 (1262)
+.|++++|+.-..-..-.+.--+..+ ..++.-.. -..|....++-.+. + .-|+.....+....+...
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~L----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~----- 264 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASI-EPMAERVL----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD----- 264 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchh-HHHHHHHH----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-----
Confidence 78888877653333221111111111 11111111 11222222222221 1 223333333222221100
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHh--c---CCHHHHHHHHHHHHHCC-CCCCHh---------hHHHHH--HHhh
Q 000837 929 ALNLKELMLGQNKSHNLIIFNILVFHLMS--S---GNIFHVKRVLDELQENE-LLPDEV---------TYNFLI--YGFS 991 (1262)
Q Consensus 929 A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g-~~pd~~---------~~~~li--~~~~ 991 (1262)
.......+.......+..++.. . ..+..|.+.+.+-.... ..++.. .-..++ .-+.
T Consensus 265 -------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 265 -------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred -------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0000000001111111111111 1 12333333332211110 011111 111111 2234
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEH 1071 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 1071 (1262)
-.|+.-.|.+-|+..++....++ ..|..+..+|....+.++-...|++..+.+ +-++.+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 56889999999999998533222 227777788999999999999999998853 2357788888888888899999999
Q ss_pred HHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHCCC
Q 000837 1072 FLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDSIIST-CNKLDPAMDLHAEMMARDL 1148 (1262)
Q Consensus 1072 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~~~ 1148 (1262)
-|++.+. +.|. ...|..+.-+..+.+++++++..|++..++ ..-|...+|..-+-. .+++++|.+.|+..++ +
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--L 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--h
Confidence 9999988 4554 778888888888899999999999999887 334555555444444 8999999999999987 4
Q ss_pred CCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1149 KPS-------MNTW--HVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1149 ~p~-------~~~~--~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
.|. +..+ ..++-.-.+ +++++|++++.++.+.+ +-..-.|..|+....+.|+.++|+++|++....
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 443 2222 222222233 89999999999999852 334677889999999999999999999987763
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=6.5e-11 Score=137.12 Aligned_cols=256 Identities=12% Similarity=0.053 Sum_probs=153.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHhhcCCChhHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhc
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLPDEV--TYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEV 1028 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 1028 (1262)
..+....|+++.|.+.+.+..+.. |+.. ........+...|+++.|...++.+.+.. | +...+..+...+...
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence 334444555555555555544321 2221 22223444455555555555555555532 3 233444555556666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHhHHHHHHHHHHhcCChH
Q 000837 1029 GELGKSLELSQEMRLKGLVHDSIVQN---AIAEGLLSRGKLQEAEHFLDQIVDKDL---VPDTINYDNLIKRFCGYGRLD 1102 (1262)
Q Consensus 1029 g~~~~A~~~~~~~~~~g~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~g~~~ 1102 (1262)
|++++|.+.++.+.+.+..+...... .....+...+..+++.+.+..+.+... +.+...+..++..+...|+.+
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 66666666666665554322211111 111111222333334445555554311 125667777777778888888
Q ss_pred HHHHHHHHHHhCCCCCCHH-----HHHHHHcc-cCChhHHHHHHHHHHHCCCCC-CH--HHHHHHHHHHHhcCCHHHHHH
Q 000837 1103 KAVDLLNIMLKKGSTPNSS-----SYDSIIST-CNKLDPAMDLHAEMMARDLKP-SM--NTWHVLVHKLCQEGRTTEAER 1173 (1262)
Q Consensus 1103 ~A~~~~~~~~~~~~~p~~~-----~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~ 1173 (1262)
+|.+.+++.+++ .|+.. .+...... .++.+.+.+.+++..+ ..| ++ .....+++.+.+.|++++|.+
T Consensus 281 ~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 281 SAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred HHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 888888887775 23333 22222222 5667778888888776 455 55 677899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1174 LLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1174 l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
.|+........|++..+.+++..+.+.|+.++|.++|++.+.
T Consensus 357 ~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 357 AFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999644444689998899999999999999999999998755
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.2e-10 Score=120.92 Aligned_cols=282 Identities=13% Similarity=0.046 Sum_probs=221.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHH
Q 000837 944 NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVIS 1023 (1262)
Q Consensus 944 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 1023 (1262)
++.....-.+-+...+++.+..+++++..+.. ++....+..-|.++...|+..+-..+=.++++. .+-...+|.++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 45555566677888899999999999998863 445556666677888999988888888888874 2335678888888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCh
Q 000837 1024 CLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRL 1101 (1262)
Q Consensus 1024 ~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 1101 (1262)
-|.-.|+..+|.++|.+.... .|. ...|-.....|.-.|..++|+..+..+.+. .|. ..-+--+..-|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccH
Confidence 888889999999999988763 444 668999999999999999999999888763 222 22333456678899999
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 000837 1102 DKAVDLLNIMLKK-GSTPNSSSYDSIIST-CNKLDPAMDLHAEMMAR--DLKP----SMNTWHVLVHKLCQEGRTTEAER 1173 (1262)
Q Consensus 1102 ~~A~~~~~~~~~~-~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 1173 (1262)
+.|.+.|...... ...|=+.....++.. .+.+.+|...|+..+.. ...+ =..+++.|+++|.+.+.+++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999998875 223333334444444 88999999999988731 1111 23568999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1174 LLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1174 l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
.+++.+.. .+-++.++.+++-.|...|+.+.|++.|.+.+. ++|++.++..+|+..-.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999986 366899999999999999999999999999998 89999888888775544
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=8.5e-10 Score=117.12 Aligned_cols=360 Identities=14% Similarity=0.070 Sum_probs=242.4
Q ss_pred CchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhh--H
Q 000837 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLL-EDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISS--Y 913 (1262)
Q Consensus 837 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~ 913 (1262)
..|...+-.....+-+.|....|+..|...... .| .-..|..|.... .+.+. ...+...+ ..+... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~----~~~l~~~l-~~~~h~M~~ 230 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEI----LSILVVGL-PSDMHWMKK 230 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHH----HHHHHhcC-cccchHHHH
Confidence 345655556666677888888999888887752 22 222333332222 22222 22222221 111111 1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHhh
Q 000837 914 RNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL--LPDEVTYNFLIYGFS 991 (1262)
Q Consensus 914 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~ 991 (1262)
-.+..++-+....+++++-.+.....|++.+...-+....+.-...++++|+.+|+++.+... --|..+|..++..-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 234556666678888888888888888776666666666667778889999999999888742 125567766654432
Q ss_pred cCCChhHHHHHHHHHHH--CCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 000837 992 KHKDVSSSKYYIAAMVS--KGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQE 1068 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~ 1068 (1262)
... .+.++.+-.- ..++| .|...+.+-|.-.++.++|..+|+...+. .|. ...|+.+.+-|...++.+.
T Consensus 311 ~~s----kLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 311 DKS----KLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred hhH----HHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHH
Confidence 221 1222222221 22333 56666777788888889999999988875 344 6788888888999999999
Q ss_pred HHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCC
Q 000837 1069 AEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARD 1147 (1262)
Q Consensus 1069 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~ 1147 (1262)
|++-++.+++- .| |-..|-.|..+|...+++.-|+-.|++..+
T Consensus 383 Ai~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---------------------------------- 426 (559)
T KOG1155|consen 383 AIESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---------------------------------- 426 (559)
T ss_pred HHHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh----------------------------------
Confidence 99999888874 44 678888888888888888888888877765
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----C-CCCC
Q 000837 1148 LKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS----G-YSPD 1221 (1262)
Q Consensus 1148 ~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~ 1221 (1262)
++| |+..|..|+.+|.+.++.++|++-++++...| ..+...+..|++.|.+.++.++|.+.+++-++. | ..|.
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~ 505 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDE 505 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchH
Confidence 445 77899999999999999999999999999876 447788999999999999999999999998884 2 2332
Q ss_pred hhhHHHHHHHhhccccccccccchhhhhhhhc
Q 000837 1222 FSTHWSLISNLRNSNDKDNNRNSQGFLSRLLS 1253 (1262)
Q Consensus 1222 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1253 (1262)
-..+...|++-....+.+. .+......++.
T Consensus 506 t~ka~~fLA~~f~k~~~~~--~As~Ya~~~~~ 535 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFD--EASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhhcchH--HHHHHHHHHhc
Confidence 3334555666555443333 33333444443
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=7.6e-12 Score=139.24 Aligned_cols=192 Identities=13% Similarity=0.071 Sum_probs=83.9
Q ss_pred hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHH
Q 000837 1015 NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVH-DSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLI 1092 (1262)
Q Consensus 1015 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 1092 (1262)
+.+|-++.++|.-+++.+.|++.|+..++. .| ...+|+.+..-+....++|.|...|+.++. +.|+ -.+|..|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLG 496 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhh
Confidence 344444444555555555555555544442 23 244444444444444445555555544443 2222 23344444
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 000837 1093 KRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGR 1167 (1262)
Q Consensus 1093 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 1167 (1262)
..|.+.++++.|.-.|+++.+. .|......+.+.. .|+.|+|+.+++++.. +.| |+..-...+..+.-.++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcc
Confidence 4444555555555444444442 2222221111111 4444455555544443 333 33333444444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1168 TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1168 ~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
+++|+..++++.+. ++.+...+..++.+|.+.|+.+.|+.-|--+.+
T Consensus 573 ~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 573 YVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 45555554444442 122244444444445555554444444444433
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=4e-09 Score=107.70 Aligned_cols=490 Identities=12% Similarity=0.102 Sum_probs=295.3
Q ss_pred HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchH
Q 000837 638 QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLK 717 (1262)
Q Consensus 638 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 717 (1262)
+-+....++..|+.+++.-...+-.-...+-..+..++.+.|++++|...+..+.+.. .|+...+..+..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3455677888888888776654433233445557778889999999999999888754 577778888888888889999
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 000837 718 ESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSML 797 (1262)
Q Consensus 718 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~ 797 (1262)
+|.++-.++ +.++.....|++.-.+.++-++-..+.+.+.
T Consensus 109 eA~~~~~ka----------------------------------------~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 109 EAKSIAEKA----------------------------------------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred HHHHHHhhC----------------------------------------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 987776543 1133333344444455666666655555554
Q ss_pred hCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHH-HHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 000837 798 DKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHS-AFISGFCVTGKAEEASKLFRDMLSQGMLLEDE 876 (1262)
Q Consensus 798 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 876 (1262)
+. .+--.+|.........+.+|++++.++...++. -...| -+.-+|.+..-++-+.++++--+++ .+-+..
T Consensus 149 D~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e--y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSti 220 (557)
T KOG3785|consen 149 DT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE--YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTI 220 (557)
T ss_pred hh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh--hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHH
Confidence 32 122233444444445678888888888765333 22222 2344667777788888888777663 222344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhc-----CChhhHHHHHHHHHhCCCCCCcchHHHH
Q 000837 877 VYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCME-----GGVPWALNLKELMLGQNKSHNLIIFNIL 951 (1262)
Q Consensus 877 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l 951 (1262)
..|.......+.=+-..|.+-.+++.+.+-.. ...+.-+++. .+-+.|++++-.+.+. -+..--.|
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL 291 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNL 291 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhh
Confidence 55555544445433344444444444432211 1122333333 4557788887666553 22233455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHh-----hcCCChhHHHHHHHHHHHCCCCCCh-hcHHHHHHHH
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGF-----SKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSVISCL 1025 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~ 1025 (1262)
+-.|.+.++..+|..+.+++.- ..|-......++.+- .......-|.+.|+-.-+.+..-|. .--.++..++
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 6668899999999988776543 233333333332221 1122345566666666555554443 3345667777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 000837 1026 CEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAV 1105 (1262)
Q Consensus 1026 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 1105 (1262)
.-..++|+++.+++.+...-...|...+ .++++++..|++.+|+++|-+.....++-+..-...|.++|.+.|.++.|+
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 7778899999999999886444444444 478899999999999999988876555533444455668899999999988
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1106 DLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1106 ~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
+++-++- -+.+..+...+|.. ++.+--|-+.|+.+.. +.|+++.|. |+-.....+|..+...
T Consensus 449 ~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe---------GKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 449 DMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE---------GKRGACAGLFRQLANH 514 (557)
T ss_pred HHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC---------CccchHHHHHHHHHcC
Confidence 7765543 23344445555544 6666666777776664 677777773 4444444555555543
Q ss_pred CCCC-CHHHHHHHHHHHHhcCC
Q 000837 1182 GDTP-TQEMYSSVVNRYSLENN 1202 (1262)
Q Consensus 1182 ~~~p-~~~~~~~l~~~~~~~g~ 1202 (1262)
...| ..+.....+..+...++
T Consensus 515 ~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 515 KTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred CCCCCchhHHHHHHHHHHhCCC
Confidence 2222 22333344444444444
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=1.2e-07 Score=105.06 Aligned_cols=576 Identities=12% Similarity=0.062 Sum_probs=358.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhc-CCCCCHhh
Q 000837 589 GQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQR-GLTIENES 667 (1262)
Q Consensus 589 g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~ 667 (1262)
+..|....|..+-++ ++.+...+.+|+ ..|-..++.+.+.|++..-...|+..+.. -+.-....
T Consensus 76 ~~~~T~~~~~~vn~c-------~er~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rI 140 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC-------FERCLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRI 140 (835)
T ss_pred ccCCCChHHHHHHHH-------HHHHHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccc
Confidence 345555566555555 566666666663 46777788888899999999999888764 22223346
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcC------CCChhHHHHH
Q 000837 668 YTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCP------CLRSDICYIF 741 (1262)
Q Consensus 668 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~ 741 (1262)
|...+......+-++.+..++++..+.. | ..-...+..+++.+++++|.+.+...+..+. ..+...|..+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 7778888888888889999999887632 3 3467778888999999999999888765321 1222334433
Q ss_pred HHHHHhcC---CcccHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHH
Q 000837 742 LEKLCVTG---FSSNAHALVEELLQQGCNLDQ--MAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLF 816 (1262)
Q Consensus 742 l~~~~~~g---~~~~a~~~l~~~~~~g~~~d~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 816 (1262)
...+.++. ..-..-.+++..+.. -+|. ..|.+|.+.|.+.|.+++|..+|++.+..- .+..-++.+.++|.
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 33333332 233333333333322 2343 678889999999999999999998877642 23445555566665
Q ss_pred hcCCHHHHHHHHHHHhhcCCC-chHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-----------CCCHHhHHHHHHH
Q 000837 817 RTGRLEKAVALREISLKEQPL-LLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGM-----------LLEDEVYNMLIQG 884 (1262)
Q Consensus 817 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~pd~~t~~~ll~~ 884 (1262)
.-....-+..+= ...+.+.. -+.. +++-.+.-|+.+..... +.+..+|..-+..
T Consensus 293 ~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l 358 (835)
T KOG2047|consen 293 QFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL 358 (835)
T ss_pred HHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh
Confidence 432211111111 00001111 0111 12222333333333110 1133344333322
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCc----cChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---cchHHHHHHHHH
Q 000837 885 HCEANNLRKVRELLSAMIRK-RLS----LSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHN---LIIFNILVFHLM 956 (1262)
Q Consensus 885 ~~~~g~~~~a~~~~~~~~~~-~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~ 956 (1262)
..|+..+....+.++++. ++. .-...|..+.+.|-..|+++.|..+|++..+...+.- ..+|-.-..+-.
T Consensus 359 --~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 --YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred --hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 356777888888888775 111 1123567778888889999999999998887654431 346777777778
Q ss_pred hcCCHHHHHHHHHHHHHCCCC----------C-------CHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHH
Q 000837 957 SSGNIFHVKRVLDELQENELL----------P-------DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLR 1019 (1262)
Q Consensus 957 ~~g~~~~A~~~~~~m~~~g~~----------p-------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 1019 (1262)
++.+++.|+++.+......-. | +...|...++.--..|-++....+|+++++..+...... .
T Consensus 437 rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~ 515 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-I 515 (835)
T ss_pred hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-H
Confidence 888899999888776543111 1 123344444545556788888899999998655332222 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCH-hHH-HHHHH
Q 000837 1020 SVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSR---GKLQEAEHFLDQIVDKDLVPDT-INY-DNLIK 1093 (1262)
Q Consensus 1020 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~-~~~-~~l~~ 1093 (1262)
...-.+-...-++++.++++.-+..-..|+ ...|+..+.-+.+. ...+.|..+|++.++ |.+|.. .+. -....
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 223345566678899999988777644455 56788777666553 468999999999999 677652 222 22222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHcc----cCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHh
Q 000837 1094 RFCGYGRLDKAVDLLNIMLKKGSTPNS--SSYDSIIST----CNKLDPAMDLHAEMMARDLKPSMNT---WHVLVHKLCQ 1164 (1262)
Q Consensus 1094 ~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~ 1164 (1262)
.=-+.|-...|+.++++.-.. .++.. ..|+..|.. .| +..-..+|++.++ .-|+... .-.++..-++
T Consensus 595 lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtk 670 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIE--SLPDSKAREMCLRFADLETK 670 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhh
Confidence 223468888999999996654 44443 347777765 33 4456789999997 4665443 3445556778
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 000837 1165 EGRTTEAERLLISMVQL-GDTPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1165 ~g~~~~A~~l~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
.|..+.|..++...-+. ....+...|.+.=.--.++|+-+--.+.
T Consensus 671 lGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 671 LGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred hhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999988774 2233688888887778899995443333
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=2.3e-10 Score=131.74 Aligned_cols=250 Identities=10% Similarity=0.059 Sum_probs=166.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHH--HHHHHhhcCCChhHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCCh
Q 000837 955 LMSSGNIFHVKRVLDELQENELLPDEVTYN--FLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEVGEL 1031 (1262)
Q Consensus 955 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 1031 (1262)
..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|...++++.+. .| +...+..+...|.+.|++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhH
Confidence 35566666666666666553 33332222 2234556666677777776666663 23 334455566666777777
Q ss_pred hHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHH
Q 000837 1032 GKSLELSQEMRLKGLVHDS-------IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKA 1104 (1262)
Q Consensus 1032 ~~A~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 1104 (1262)
++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 7777777777665433221 12233333333444455555666655432 233566777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 1105 VDLLNIMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLG 1182 (1262)
Q Consensus 1105 ~~~~~~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~ 1182 (1262)
.+.+++..+. .|+.......... .++.+++++..++..+ ..| |+..+..++..|.+.|++++|.+.|+.+.+
T Consensus 283 ~~~L~~~l~~--~~~~~l~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-- 356 (398)
T PRK10747 283 QQIILDGLKR--QYDERLVLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-- 356 (398)
T ss_pred HHHHHHHHhc--CCCHHHHHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 8888888774 3444322222222 5788888888888876 455 667788999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1183 DTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1183 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
..|+...+..++.++.+.|+.++|.++|++.+.
T Consensus 357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 579999888999999999999999999998765
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=1.2e-07 Score=105.10 Aligned_cols=164 Identities=13% Similarity=0.156 Sum_probs=101.2
Q ss_pred cHHHHHHHHhhhCchHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 000837 702 DCKSLVECLCHKKLLKESLQLFECMLVSCPC-LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGL 780 (1262)
Q Consensus 702 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~ 780 (1262)
.|...+..+.++|++......|+.++..-|. ....+|-..+.-+...|-.+.+..+++..++. ++..-+.-|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555556666667777777777666654433 34456666666666667777777777766554 444466667777
Q ss_pred HhcCCHHHHHHHHHHHhhC------CCCCChhcHHhHHHHHHhcCCH---HHHHHHHHHHhhcCCCchHHhHHHHHHHHh
Q 000837 781 CKEKKFSVAFKMLDSMLDK------NMAPCLDVSVSLIPQLFRTGRL---EKAVALREISLKEQPLLLFSFHSAFISGFC 851 (1262)
Q Consensus 781 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 851 (1262)
++.+++++|-+.+...+.. ..+.+...+..+.+...+.-+. -...+++..+.......-...|++|.+.|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 7777777777777766531 1133444555555555544322 223344555554444444567888888888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 000837 852 VTGKAEEASKLFRDMLSQ 869 (1262)
Q Consensus 852 ~~g~~~~A~~~~~~m~~~ 869 (1262)
+.|.++.|.++|++...+
T Consensus 260 r~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 888888888888887663
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=9.5e-13 Score=144.79 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=73.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCChHHHH
Q 000837 1027 EVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKD-LVPDTINYDNLIKRFCGYGRLDKAV 1105 (1262)
Q Consensus 1027 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~ 1105 (1262)
..+++++|.++++...+. .+++..+..++..+...++++++..+++++.... ..++...|..+...+.+.|++++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444443332 1233334444444444444555444444443221 1223444444444445555555555
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHcc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1106 DLLNIMLKKGSTPNSS-SYDSIIST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1106 ~~~~~~~~~~~~p~~~-~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
+.+++.++. .|+.. ....++.. .|+.+++.++++...+. ...++..|..++.+|...|+.++|...+++..+.
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 555554443 23211 11112111 44444444444444431 1335567889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1182 GDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1182 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
.+.|+.....+++++...|+.++|.++++++.+
T Consensus 244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -STT-HHHHHHHHHHHT-----------------
T ss_pred -ccccccccccccccccccccccccccccccccc
Confidence 255788888999999999999999999888765
No 57
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.7e-11 Score=134.95 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=155.7
Q ss_pred CHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 000837 979 DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVH-DSIVQNAI 1056 (1262)
Q Consensus 979 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l 1056 (1262)
...+|.++.++|.-+++.+.|++.|++.++ +.| ..++|+.+..-+.....+|.|...|+..+.. .| +-..|.-|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGl 495 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGL 495 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhh
Confidence 457888888888888888888888888887 456 5677777777788888888888888888763 22 24566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHcccCCh
Q 000837 1057 AEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSY--DSIISTCNKL 1133 (1262)
Q Consensus 1057 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~ll~~~g~~ 1133 (1262)
.-.|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.++|+++++++.....+-...-| ..++...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 8889999999999999999988 5664 667777788889999999999999998875322222222 2233338999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 000837 1134 DPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP 1185 (1262)
Q Consensus 1134 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p 1185 (1262)
++|+..++++.+ +.| +...+..++..|.+.|+.+.|+.-|.-|.+...++
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999999999987 777 56788999999999999999999999998864433
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=1.5e-07 Score=107.05 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHH
Q 000837 1053 QNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS----YDSII 1127 (1262)
Q Consensus 1053 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~ll 1127 (1262)
|......+.+.+..++|...+.++... .| ....|......+...|..++|.+.|...+.. .|+.+- ...++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 334444444444444554444444432 22 2334444444444455555555555444442 222111 11111
Q ss_pred cccCChhHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1128 STCNKLDPAMD--LHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1128 ~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
...|+..-|.+ ++..+.+ +.| ++..|..++..+-+.|+.++|-+-|+.+.+.
T Consensus 729 le~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 11333333333 5555554 556 7889999999999999999999999998875
No 59
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.39 E-value=1.9e-06 Score=96.27 Aligned_cols=230 Identities=15% Similarity=0.155 Sum_probs=143.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHH
Q 000837 219 NLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLC 298 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~ 298 (1262)
..|..|.++|.+..|.+.-..-.+ +..+......+..++.+..-|+.|-.+|++... +..-+..+.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d------------~dkale~fk 685 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD------------FDKALECFK 685 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC------------HHHHHHHHH
Confidence 456667777777776655432221 123555666677777777777777777776532 222233333
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHH
Q 000837 299 RDRKIQESRNLVRKAMAFGLEPSSLVFN-EVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFV 377 (1262)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 377 (1262)
+-.-+..|.++-+-. +|..+++.. .-..-+...|.++.|..-|-+..+ .-.-|.+-.....+.+|.-++
T Consensus 686 kgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred cccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------HHHHHHHHhhhhhhhhhHhHH
Confidence 333444555444332 233333322 123345566777777777766621 122355556677788888888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 000837 378 QELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITP 457 (1262)
Q Consensus 378 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 457 (1262)
+.+.++. .-.-.|..+...|...|+++.|.++|.+. -.++--|.+|.+.|+++.|.++-++.. |.+.
T Consensus 756 dniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~ 822 (1636)
T KOG3616|consen 756 DNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEA 822 (1636)
T ss_pred HHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--Cchh
Confidence 8777653 22345777788888999999999988753 234567888999999999988876664 3455
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000837 458 SLSTYRILLAGYCKARQFDEAKIMVSEM 485 (1262)
Q Consensus 458 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 485 (1262)
..+.|-+-..-+-+.|++.+|.+++-.+
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 6677777777788888888888877443
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=1.2e-09 Score=125.64 Aligned_cols=288 Identities=12% Similarity=0.048 Sum_probs=225.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCc
Q 000837 186 LMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNL-IQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKV 264 (1262)
Q Consensus 186 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~ 264 (1262)
....-.|+++.|++.+....+.. +++..+..+ ..+-.+.|+++.|...|.++.+..+.+.....-.....+...|+
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC
Confidence 33344699999998888765543 234555544 34448899999999999999886443322222234678889999
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCC
Q 000837 265 THLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSS-------LVFNEVAYGYCEKKD 337 (1262)
Q Consensus 265 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~ 337 (1262)
+++|...++++.+..+. +......+...+.+.|++++|..++.++.+.+..++. .+|..++.......+
T Consensus 169 ~~~Al~~l~~~~~~~P~----~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 169 NHAARHGVDKLLEVAPR----HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998864 6778889999999999999999999999997754322 133344444445556
Q ss_pred HHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 338 FEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEI 415 (1262)
Q Consensus 338 ~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 415 (1262)
.+...++++.. ..+.++.....+...+...|+.++|.+.+++..+. .||.. -.++.+.+..++.+++.+..+..
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHH
Confidence 77777888887 44567788899999999999999999999998874 45542 22344555679999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000837 416 LSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487 (1262)
Q Consensus 416 ~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 487 (1262)
.+..+ -|...+..+...+.+.|++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-..
T Consensus 321 lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98854 36677889999999999999999999999986 69999999999999999999999999998754
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=9.5e-10 Score=127.44 Aligned_cols=294 Identities=11% Similarity=-0.000 Sum_probs=216.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCc
Q 000837 185 ALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKV 264 (1262)
Q Consensus 185 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~ 264 (1262)
+.+....|+++.|.+.+.+..+.. +.....+.....++...|++++|...|.+..+..+.+.....-.....+...|+
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 334457899999999999887764 333444556677888899999999999998776444333344445788889999
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCH---
Q 000837 265 THLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGY---CEKKDF--- 338 (1262)
Q Consensus 265 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~--- 338 (1262)
++.|...++++.+..+. +...+..+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..
T Consensus 169 ~~~Al~~l~~l~~~~P~----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPR----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998864 56788899999999999999999999999987543332211111111 222232
Q ss_pred -HHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHH
Q 000837 339 -EDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEIT---FGILIGWTCREGNLRSALVFF 412 (1262)
Q Consensus 339 -~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~~~ 412 (1262)
+.....+... ..+.+...+..+...+...|+.++|.+++++..+.. ||... ........+..++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3333333333 122478889999999999999999999999999864 44432 122222334468889999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000837 413 SEILSRGLNPDV--HTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487 (1262)
Q Consensus 413 ~~m~~~g~~p~~--~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 487 (1262)
+...+..+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 323 e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888877322 33 456688889999999999999999533333468999999999999999999999999998654
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-07 Score=99.84 Aligned_cols=310 Identities=13% Similarity=0.096 Sum_probs=232.4
Q ss_pred hcCChhhHHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHhhcCCChhHH
Q 000837 922 MEGGVPWALNLKELMLGQN-KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVT-YNFLIYGFSKHKDVSSS 999 (1262)
Q Consensus 922 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~A 999 (1262)
-.++...|...+--+.... ++.|......+...+...|+..+|+..|++.... .|+..+ .......+.+.|+++..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 3455555555554444332 4447778888999999999999999999988764 333322 12222234577888888
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000837 1000 KYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDK 1079 (1262)
Q Consensus 1000 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 1079 (1262)
..+...+.... +-+...|..-+..+...+++..|+.+-++.++.. +.+...+-.-...+...|++++|.-.|..++.
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 77777777631 2233344444455667789999999999988753 22355666667888999999999999999887
Q ss_pred CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH----cc--cCChhHHHHHHHHHHHCCCCCC-
Q 000837 1080 DLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII----ST--CNKLDPAMDLHAEMMARDLKPS- 1151 (1262)
Q Consensus 1080 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll----~~--~g~~~~A~~~~~~~~~~~~~p~- 1151 (1262)
+.| +...|..|+..|...|+..+|.-+-+...+. -|...--..++ .. ..--++|.+++++.++ ++|+
T Consensus 363 -Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y 437 (564)
T KOG1174|consen 363 -LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIY 437 (564)
T ss_pred -cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCcc
Confidence 455 5889999999999999999999888777664 22222222222 22 4457899999999986 7885
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 000837 1152 MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISN 1231 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 1231 (1262)
......++..+...|++++++.++++.+. ..||...-+.|++.+...+.+++|.+.|..++. ++|.+.....-+.-
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHH
Confidence 45678889999999999999999999997 589999999999999999999999999999999 79999999999999
Q ss_pred hhccccccccccch
Q 000837 1232 LRNSNDKDNNRNSQ 1245 (1262)
Q Consensus 1232 l~~~~~~~~~~~~~ 1245 (1262)
+-++.+..+++++.
T Consensus 514 lEK~~~~~DATdE~ 527 (564)
T KOG1174|consen 514 LEKSDDESDATDES 527 (564)
T ss_pred HHhccCCCCccccc
Confidence 98877766665443
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=5.5e-12 Score=138.77 Aligned_cols=262 Identities=18% Similarity=0.143 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHcc
Q 000837 564 SLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKK 643 (1262)
Q Consensus 564 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 643 (1262)
.+...+.+.|++++|++++.+.......|+...|..++..++...++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4456667777777777777554443324455555555554554444477777777776655433 45556666655 577
Q ss_pred CChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC-CCCCcccHHHHHHHHhhhCchHhHHHH
Q 000837 644 GLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRK-WLPGLEDCKSLVECLCHKKLLKESLQL 722 (1262)
Q Consensus 644 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~ 722 (1262)
+++++|.++++...+.. +++..+..++..+.+.++++++..+++.+.... ..++...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888887777665542 355566667777777788888888777766432 234566667777777777777777777
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 000837 723 FECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMA 802 (1262)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 802 (1262)
++++++..|+ |......++..+...|+.+++..+++...+.. +
T Consensus 169 ~~~al~~~P~------------------------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~ 211 (280)
T PF13429_consen 169 YRKALELDPD------------------------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAA-P 211 (280)
T ss_dssp HHHHHHH-TT-------------------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHcCCC------------------------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c
Confidence 7777776666 55666666666666677766666666665543 3
Q ss_pred CChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 000837 803 PCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDML 867 (1262)
Q Consensus 803 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 867 (1262)
.+...+..+..++...|+.++|...+++.....+. |......+..++.+.|+.++|.++.+++.
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 34445556666666667777777776666655443 55555566666666777777666665544
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=6.6e-07 Score=99.89 Aligned_cols=431 Identities=15% Similarity=0.122 Sum_probs=221.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHH
Q 000837 399 TCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEA 478 (1262)
Q Consensus 399 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 478 (1262)
|...+++...+.+.+.++++ ..-...|.....-.+...|+-++|......-....++ +.+.|.++.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHH
Confidence 34667778888888877774 2223344444434456678888888877766665443 567788877777777888888
Q ss_pred HHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCC
Q 000837 479 KIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSM 558 (1262)
Q Consensus 479 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~ 558 (1262)
++.+......+. .|...+..+...-...+++......-.+.++..+
T Consensus 95 iKcy~nAl~~~~----------------------------------dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 95 IKCYRNALKIEK----------------------------------DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHHHHhcCC----------------------------------CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 888888877664 3444555444444555666666666666655554
Q ss_pred CCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHH
Q 000837 559 IPN--FNSLIKMVHARGNLKAALLLVDEMVRWG-QELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNL 635 (1262)
Q Consensus 559 ~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 635 (1262)
... |..++.++.-.|+...|..++++..+.. ..|+...+......+.+
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~----------------------------- 191 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ----------------------------- 191 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-----------------------------
Confidence 444 7888888888999999999999887653 24555544333222111
Q ss_pred HHHHHHccCChHHHHHHHHHHhhcCCCCCHhh-HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHH-HHHHhhh
Q 000837 636 LIQACCKKGLVRDGKKIFDGMLQRGLTIENES-YTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSL-VECLCHK 713 (1262)
Q Consensus 636 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~ 713 (1262)
.....+.|..+.|++.+..-... +. |-.. -.+-...+.+.+++++|..++..++... ||...|... ..++.+-
T Consensus 192 -n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 192 -NQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKI 266 (700)
T ss_pred -HHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHH
Confidence 11233455555555555443322 11 2222 2233444556666666666666666654 544444333 3333222
Q ss_pred CchHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 000837 714 KLLKESL-QLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKM 792 (1262)
Q Consensus 714 g~~~~A~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~ 792 (1262)
.+--+++ .+|...-+..|. .......-+..+......+...+.+..+++.|+++- +..+...|-.....+-..++
T Consensus 267 ~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~L 342 (700)
T KOG1156|consen 267 KDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKL 342 (700)
T ss_pred hhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHH
Confidence 2222222 333333222222 111111111111112223334445555666665543 23333333222211111111
Q ss_pred HHHHhh----CCC----------CCCh--hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCH
Q 000837 793 LDSMLD----KNM----------APCL--DVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKA 856 (1262)
Q Consensus 793 ~~~~~~----~~~----------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 856 (1262)
.-.+.. .|. +|.. .++..++..+-+.|+++.|...++.....-|+ -+..|..=.+.+...|++
T Consensus 343 vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l 421 (700)
T KOG1156|consen 343 VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLL 421 (700)
T ss_pred HHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCCh
Confidence 111111 110 2222 23344556666667777777766666654222 122333334556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 857 EEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKR 905 (1262)
Q Consensus 857 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 905 (1262)
++|...+++..+.+. +|...-.--..-..+.++.++|.++.....+.|
T Consensus 422 ~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 422 DEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 666666666665322 232222123333345566666666666655554
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=4e-08 Score=100.59 Aligned_cols=445 Identities=11% Similarity=0.023 Sum_probs=256.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCch
Q 000837 186 LMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVT 265 (1262)
Q Consensus 186 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~ 265 (1262)
.-+...++|..|+.+++.-...+-+-. ..+-.++...|...|++++|+.+|.-+.+.. .|+...+-.+..++.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 445556788888888876554432211 1344468888999999999999999887643 45566677777788888999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000837 266 HLAFRVCVDMVVMGNNLTDLEKDSFHD-VVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSF 344 (1262)
Q Consensus 266 ~~A~~~~~~m~~~g~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 344 (1262)
.+|..+-.+. |+...... +...--+.++-.+-..+.+.+.+ .....-+|.........+.+|+++
T Consensus 108 ~eA~~~~~ka---------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 108 IEAKSIAEKA---------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHhhC---------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9998876655 44444444 44445566887777777777643 234445666666667788999999
Q ss_pred HHHc-CCCCCcccHHH-HHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 000837 345 FTEM-KCTPDVLAGNR-IIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNP 422 (1262)
Q Consensus 345 ~~~~-~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 422 (1262)
+.++ ...|.-...|. +.-+|.+..-++-+.+++.-..+. ++.+.+.-|....-..+.=+-..|..-..++...+-.
T Consensus 174 YkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~- 251 (557)
T KOG3785|consen 174 YKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ- 251 (557)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-
Confidence 9998 44566655554 455667777788888888776654 2333445554444444433333444444555444311
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccc
Q 000837 423 DVHTYNSLISGMFKE-----GMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLE 497 (1262)
Q Consensus 423 ~~~~y~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 497 (1262)
. -..+.-+++. ..-+.|.+++-.+.+. .|.. ---|+-.|.+.+++.+|..+.+++.-..
T Consensus 252 ~----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~Ptt-------- 315 (557)
T KOG3785|consen 252 E----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTT-------- 315 (557)
T ss_pred c----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCC--------
Confidence 1 1122222322 2336677766555542 3332 2234556777888888887776543111
Q ss_pred hhhhhHHHhcCCChhhhhhccccccCCCchhh-----HHhhhhhhccCCCHHHHHHHHHHHhhc----CCCCChHHHHHH
Q 000837 498 DPLSKGFMILGLNPSAVRLRRDNDMGFSKVEF-----FDNLGNGLYLDTDLDEYERKLSKIIED----SMIPNFNSLIKM 568 (1262)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~~~~~~a~~~l~~~~~~----~~~~~~~~li~~ 568 (1262)
|-... +..++.-......+.-|.+.|+-+-.. +..|...++..+
T Consensus 316 ---------------------------P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 316 ---------------------------PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred ---------------------------hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 22211 222222222222233333333222111 112223333333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHH
Q 000837 569 VHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRD 648 (1262)
Q Consensus 569 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 648 (1262)
+.-.-+ ++++...+..+..--...|...+| +.++++..|++.+
T Consensus 369 fFL~~q------------------------------------FddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~e 411 (557)
T KOG3785|consen 369 FFLSFQ------------------------------------FDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVE 411 (557)
T ss_pred HHHHHH------------------------------------HHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHH
Confidence 333333 455555555444333333444444 5678888889999
Q ss_pred HHHHHHHHhhcCCCCCHhhHHH-HHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHH-HHHHHhhhCchHhHHHHHHHH
Q 000837 649 GKKIFDGMLQRGLTIENESYTT-LLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKS-LVECLCHKKLLKESLQLFECM 726 (1262)
Q Consensus 649 A~~l~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~ 726 (1262)
|.++|-++....++ |..+|.. |.++|.+++.++.|+.++-.+ +.+.+..+... +.+-|.+.+.+--|.+.|+.+
T Consensus 412 aEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 412 AEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99988777665555 5666654 557788888888887665433 32233333333 345566777777777777776
Q ss_pred HhhcCC
Q 000837 727 LVSCPC 732 (1262)
Q Consensus 727 ~~~~~~ 732 (1262)
...+|.
T Consensus 488 E~lDP~ 493 (557)
T KOG3785|consen 488 EILDPT 493 (557)
T ss_pred HccCCC
Confidence 666555
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=9.9e-09 Score=107.99 Aligned_cols=302 Identities=13% Similarity=0.076 Sum_probs=219.1
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhh
Q 000837 775 HLIRGLCK--EKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCV 852 (1262)
Q Consensus 775 ~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 852 (1262)
.+..++.+ .|+|.+|+++..+..+.+-.| ...|..-+.+.-..|+.+.|-..+.+..+....++....-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34445544 799999999999988776554 456666777888999999999999999888667777778888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHH
Q 000837 853 TGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNL 932 (1262)
Q Consensus 853 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 932 (1262)
.|+...|..-+.++.+.+.. .........++|.+.|++.....++..+.+.|.-.+...-..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------- 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------- 227 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-----------------
Confidence 99999999999999986654 566788889999999999999999999998876544321110
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCC
Q 000837 933 KELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFN 1012 (1262)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 1012 (1262)
...+|+.+++-....+..+.-...|+....+ .+-+...-..++.-+.+.|+.++|.++..+..+++..
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D 295 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD 295 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 0112333433333333333334455554433 3334555566667777888888888888888887766
Q ss_pred CChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 000837 1013 PSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLI 1092 (1262)
Q Consensus 1013 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 1092 (1262)
|+. .. .-.+.+.++...-++..++..+. .+.++-.+.+|...|.+.+.+.+|.+.|+..++ ..|+..+|+.+.
T Consensus 296 ~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la 368 (400)
T COG3071 296 PRL---CR-LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELA 368 (400)
T ss_pred hhH---HH-HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHH
Confidence 651 11 12345567777777777766654 344567888888888888999999999987776 578888888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 000837 1093 KRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1093 ~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
.++.+.|++++|.+..++.+..
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 369 DALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999888888877654
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.2e-08 Score=107.43 Aligned_cols=276 Identities=14% Similarity=0.074 Sum_probs=189.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHcc
Q 000837 564 SLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKK 643 (1262)
Q Consensus 564 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 643 (1262)
.-.+-+...+++.+..++++++.+.. ++....+..-|.++...++ ..+-.-+-.++++..+. .+.+|-++...|.--
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~-~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGK-SNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcc-cchHHHHHHHHHHhCCC-CCcchhhHHHHHHHh
Confidence 34555677788888888888887752 3445555566667766666 44444444455554333 778888888888888
Q ss_pred CChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-CcccHHHHHHHHhhhCchHhHHHH
Q 000837 644 GLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLP-GLEDCKSLVECLCHKKLLKESLQL 722 (1262)
Q Consensus 644 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 722 (1262)
|+..+|.+.|.+....+.. =...|-.+...|.-.|.-+.|...+....+. .| ....+.-+.--|.+.++++.|.++
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 9999999999888765433 2446778888888888888888888776553 12 111222333446677888888888
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---
Q 000837 723 FECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK--- 799 (1262)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--- 799 (1262)
|.++....|. |+...+.+.-..-+.+.+.+|..+|+..+..
T Consensus 403 f~~A~ai~P~------------------------------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 403 FKQALAIAPS------------------------------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHhcCCC------------------------------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 8887766665 6777777766666777888888888776521
Q ss_pred -C--CCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 000837 800 -N--MAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDE 876 (1262)
Q Consensus 800 -~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 876 (1262)
+ ......+++.|.++|.+.+.+++|+..+++.+...+. +..++.++.-.|...|+++.|.+.|.+.+- +.|+..
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~ 523 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNI 523 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccH
Confidence 0 1123446777788888888888888888887776555 777778888888888888888888888776 667766
Q ss_pred hHHHHHHH
Q 000837 877 VYNMLIQG 884 (1262)
Q Consensus 877 t~~~ll~~ 884 (1262)
+...++..
T Consensus 524 ~~~~lL~~ 531 (611)
T KOG1173|consen 524 FISELLKL 531 (611)
T ss_pred HHHHHHHH
Confidence 66555543
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2.6e-09 Score=108.41 Aligned_cols=285 Identities=14% Similarity=0.096 Sum_probs=188.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CccC--hhhHHHHHHHHHhcCChhhH
Q 000837 853 TGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKR-LSLS--ISSYRNLVRWMCMEGGVPWA 929 (1262)
Q Consensus 853 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A 929 (1262)
+++.++|.+.|-+|.+... -...+--+|.+.|-+.|..+.|+.+++.+.++- ...+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4567777777777776221 123344566667777777777777777777651 1111 12334556677777888888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHhhcCCChhHHHHHHHH
Q 000837 930 LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDE----VTYNFLIYGFSKHKDVSSSKYYIAA 1005 (1262)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~ 1005 (1262)
+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888887776421 13445667788888888899998888888876543332 2234444555566788888888888
Q ss_pred HHHCCCCCChhcHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 000837 1006 MVSKGFNPSNRSLR-SVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD 1084 (1262)
Q Consensus 1006 m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 1084 (1262)
..+. .|+.+--+ .+.+.+...|+++.|++.++...+.+..--+.+...|..+|...|+.++.+.++.++.+. .+.
T Consensus 206 Alqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 206 ALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 8874 34433333 355578888888888888888888643333677788888888888888888888888874 333
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc------cCChhHHHHHHHHHHH
Q 000837 1085 TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST------CNKLDPAMDLHAEMMA 1145 (1262)
Q Consensus 1085 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~g~~~~A~~~~~~~~~ 1145 (1262)
...-..+........-.+.|...+.+-+.. +|+...+..++.. .|...+.+.++.+|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 334444544444455556666666665554 6888877777766 4556666666666664
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=3.4e-09 Score=107.57 Aligned_cols=222 Identities=15% Similarity=0.148 Sum_probs=150.2
Q ss_pred cCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcc------cHHHHHHHHhhhCch
Q 000837 643 KGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLE------DCKSLVECLCHKKLL 716 (1262)
Q Consensus 643 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~ 716 (1262)
....++|.++|-+|.+.... +..+--+|.+.|-+.|..+.|+.+.+.+.++ ||.. ....+..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 45678888888888875333 4445567778888888888888888877764 3322 122233334444445
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 717 KESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSM 796 (1262)
Q Consensus 717 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~ 796 (1262)
|.|.++|. .+.+.+ ..-....-.|+..|-+..+|++|++.-+++
T Consensus 124 DRAE~~f~-----------------------------------~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L 167 (389)
T COG2956 124 DRAEDIFN-----------------------------------QLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERL 167 (389)
T ss_pred hHHHHHHH-----------------------------------HHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55544444 443322 112345667788888888999999888888
Q ss_pred hhCCCCCCh----hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 000837 797 LDKNMAPCL----DVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGML 872 (1262)
Q Consensus 797 ~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 872 (1262)
.+.+..+.. ..|..+...+....+++.|..++.+..+.+++ .+.+--.+.+.+...|+++.|.+.++...+++..
T Consensus 168 ~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 168 VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 776544332 24555666666677888888888888777655 4444456677788888888888888888887655
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 873 LEDEVYNMLIQGHCEANNLRKVRELLSAMIRKR 905 (1262)
Q Consensus 873 pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 905 (1262)
--+.+...|..+|...|+.++....+..+.+..
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 455667778888888888888888888877763
No 70
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=1.3e-08 Score=107.25 Aligned_cols=294 Identities=10% Similarity=0.047 Sum_probs=180.0
Q ss_pred cCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 000837 888 ANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRV 967 (1262)
Q Consensus 888 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 967 (1262)
.|+|.+|++......+.+-.| ...|..-+.+.-..|+.+.+-..+.++.+....++....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777776655554322 2233344455555566666666666666554444455555555555666666666655
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 000837 968 LDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLV 1047 (1262)
Q Consensus 968 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 1047 (1262)
.+++.+.+.. +.........+|.+.|++.....+..++.+.|.-.+...- .
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~----------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R----------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------
Confidence 5555554322 2334444555555555555555555555554432221100 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 000837 1048 HDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII 1127 (1262)
Q Consensus 1048 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 1127 (1262)
....+|+.+++-....+..+.-...++....+ .+-++..-.+++.-+...|+.++|.++..+.++++..|....+..-+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l 305 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc
Confidence 01234555555444444444444455554432 23344555666777778888888888888888777666632222211
Q ss_pred cccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1128 STCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1128 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
. -++.+.-++..++-.+. ...++..+..|+..|.+.+.+.+|...|+.+.+ ..|+.+.|..+++++.+.|+..+|.
T Consensus 306 ~-~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 306 R-PGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred C-CCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHH
Confidence 1 45555555555555541 223567899999999999999999999998887 6899999999999999999999999
Q ss_pred HHHHHHHHc
Q 000837 1208 ELMQAMQQS 1216 (1262)
Q Consensus 1208 ~~~~~~~~~ 1216 (1262)
++++..+-.
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 999988754
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=2e-09 Score=129.78 Aligned_cols=247 Identities=11% Similarity=0.005 Sum_probs=163.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhc
Q 000837 192 GMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVG---------VGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKM 262 (1262)
Q Consensus 192 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~ 262 (1262)
+.+++|..++++.++.. |.++..|..+..+|.. .+++++|...+++..+.++. +..+|..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 34677888888877665 6667777766665542 23477888888888877655 667777787888888
Q ss_pred CchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 000837 263 KVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLL 342 (1262)
Q Consensus 263 ~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 342 (1262)
|++++|...|+++++.++. +...+..+..++...|++++|...++++++.. +.+...+..++..+...|++++|+
T Consensus 352 g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI----SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHH
Confidence 8888888888888887743 45567777778888888888888888887765 223333334444566678888888
Q ss_pred HHHHHc--CCCCC-cccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000837 343 SFFTEM--KCTPD-VLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEI-TFGILIGWTCREGNLRSALVFFSEILSR 418 (1262)
Q Consensus 343 ~~~~~~--~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~~~~~m~~~ 418 (1262)
..+++. ..+|+ ...+..+..++...|++++|...+.++... .|+.. ..+.+...++..| +.|...++.+.+.
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 888877 22343 334667777788888888888888876654 34433 3444555666666 4777767766643
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 419 -GLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR 453 (1262)
Q Consensus 419 -g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 453 (1262)
.-.|.......++ |.-.|+-+.+..+ +++.+.
T Consensus 503 ~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 503 EQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhcc
Confidence 2222222333333 3345666666666 777765
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=1.1e-06 Score=98.15 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=84.8
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCCh-hcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEG 1059 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 1059 (1262)
.|+..++..+-..|+++.|..+.+..+.+ .|+. ..|..-.+.+...|.+++|..++++..+.+ .+|..+=.--+.-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 34455677778888888888888888774 5553 344455567788888888888888887753 3344443355556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHh--------HHHHH--HHHHHhcCChHHHHHHHHHHHh
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDTI--------NYDNL--IKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
..+.++.++|..+.....+.|. +.. .|..+ ..+|.+.|++..|++-|....+
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 6677888888888877776653 111 22222 3567777788777777666544
No 73
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.2e-06 Score=96.03 Aligned_cols=257 Identities=15% Similarity=0.112 Sum_probs=135.7
Q ss_pred CHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------Cc
Q 000837 388 DEITFGILIG--WTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR-G--------IT 456 (1262)
Q Consensus 388 ~~~ty~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~ 456 (1262)
|..|--.+++ .|...|++|.|.+-.+.++ +...|..+..+|++..+++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4556666654 3556788888877766654 3356777888888887777777777766642 1 11
Q ss_pred cC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhh
Q 000837 457 PS-LSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGN 535 (1262)
Q Consensus 457 p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 535 (1262)
|+ ...-.+. .-...|.+++|..++++-.+.+ .+-.
T Consensus 799 ~~e~eakvAv--LAieLgMlEeA~~lYr~ckR~D------------------------------------------LlNK 834 (1416)
T KOG3617|consen 799 GEEDEAKVAV--LAIELGMLEEALILYRQCKRYD------------------------------------------LLNK 834 (1416)
T ss_pred CcchhhHHHH--HHHHHhhHHHHHHHHHHHHHHH------------------------------------------HHHH
Confidence 21 1111111 1234566777777776655432 2333
Q ss_pred hhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHH
Q 000837 536 GLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACT 615 (1262)
Q Consensus 536 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~ 615 (1262)
.|...|.+++|.++-+.--+-.....|.....-+-.+++.+.|++.|++... |--.+...|.. + +....
T Consensus 835 lyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~e-~------p~~~e 903 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLKE-Y------PKQIE 903 (1416)
T ss_pred HHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHHh-C------hHHHH
Confidence 4445566666666655444334444455556666667777777777766421 11111111110 0 22222
Q ss_pred HHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 000837 616 GLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRK 695 (1262)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 695 (1262)
++.+.+. |...|.=-...+-..|+.+.|+.++....+ |-++.+..|-.|+.++|..+-++-
T Consensus 904 ~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---- 964 (1416)
T KOG3617|consen 904 QYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---- 964 (1416)
T ss_pred HHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc----
Confidence 2222221 222222223333456666666666665543 344555666666666666655432
Q ss_pred CCCCcccHHHHHHHHhhhCchHhHHHHHHHH
Q 000837 696 WLPGLEDCKSLVECLCHKKLLKESLQLFECM 726 (1262)
Q Consensus 696 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 726 (1262)
-|...+-.+...|...|++.+|+.+|-++
T Consensus 965 --gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 965 --GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23444555666666666666666666554
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=4.6e-11 Score=90.70 Aligned_cols=49 Identities=33% Similarity=0.566 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 000837 352 PDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTC 400 (1262)
Q Consensus 352 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 400 (1262)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=5.7e-11 Score=90.19 Aligned_cols=49 Identities=51% Similarity=0.849 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 000837 422 PDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYC 470 (1262)
Q Consensus 422 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 470 (1262)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=5.2e-06 Score=94.41 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=117.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHH
Q 000837 562 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACC 641 (1262)
Q Consensus 562 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 641 (1262)
|..-..-.-..|+.+.|+.+|..... |-++++..|-.|+ .++|.++-++-. |....-.|...|-
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk-~~kAa~iA~esg------d~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK-TDKAARIAEESG------DKAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC-chHHHHHHHhcc------cHHHHHHHHHHhh
Confidence 33333344456777777777766543 4455566666666 777766665542 4455556667777
Q ss_pred ccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC-chHhHH
Q 000837 642 KKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKK-LLKESL 720 (1262)
Q Consensus 642 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~ 720 (1262)
..|++.+|...|.+.. ++...|+. ||.++.++-+.-+..|. + .........-|...| ..+.|.
T Consensus 979 n~g~v~~Av~FfTrAq---------afsnAIRl-cKEnd~~d~L~nlal~s--~----~~d~v~aArYyEe~g~~~~~AV 1042 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQ---------AFSNAIRL-CKENDMKDRLANLALMS--G----GSDLVSAARYYEELGGYAHKAV 1042 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHH-HHhcCHHHHHHHHHhhc--C----chhHHHHHHHHHHcchhhhHHH
Confidence 7777777777776653 34444443 34444433222222211 1 111112222233333 444444
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 000837 721 QLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKN 800 (1262)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 800 (1262)
.+|.++- .+...+....++.++ .|++++.+= .....|+...+.-.+.++...++++|..++-...+..
T Consensus 1043 mLYHkAG---------m~~kALelAF~tqQf-~aL~lIa~D--Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1043 MLYHKAG---------MIGKALELAFRTQQF-SALDLIAKD--LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred HHHHhhc---------chHHHHHHHHhhccc-HHHHHHHHh--cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444320 000111111111111 111211111 1223456666666677777777777777665554311
Q ss_pred CCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhc-CCCchH----HhHHHHHHHHhhcCCHHHHHHHHHHH
Q 000837 801 MAPCLDVSVSLIPQLFRTGRLEKAVALREISLKE-QPLLLF----SFHSAFISGFCVTGKAEEASKLFRDM 866 (1262)
Q Consensus 801 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 866 (1262)
. .-.+|+..++.-..++-+.|... ...|+. .....+...+.+.|.+..|-+-|-+.
T Consensus 1111 ---------~-AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1111 ---------G-ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred ---------H-HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 0 11233344444444444444221 122222 23444556666777777666655543
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.5e-08 Score=104.84 Aligned_cols=237 Identities=14% Similarity=0.093 Sum_probs=173.1
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHHHHH
Q 000837 982 TYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD------SIVQNA 1055 (1262)
Q Consensus 982 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~ 1055 (1262)
-+..+.++..+..+++.|++-+...++. .-+..-++....+|...|.+.+.........+.|-..- ......
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456667777778888888888888874 33333344555578888888888877777766543210 112233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHcc--cC
Q 000837 1056 IAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSS--SYDSIIST--CN 1131 (1262)
Q Consensus 1056 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~--~g 1131 (1262)
+..+|.+.++++.|+..|++.+.....|+. ..+....+++++..+...-. .|+.. ........ .|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 455777788999999999998875445442 23445566666666555443 33332 22222222 89
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 000837 1132 KLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELM 1210 (1262)
Q Consensus 1132 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 1210 (1262)
++..|+..|.++++. .| |...|.+.+-+|.+.|.+..|++=.+...+.. ++....|..-+.++....+|++|.+.|
T Consensus 373 dy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999984 46 77889999999999999999999999998862 445788888899999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhhccc
Q 000837 1211 QAMQQSGYSPDFSTHWSLISNLRNSN 1236 (1262)
Q Consensus 1211 ~~~~~~~~~p~~~~~~~~l~~l~~~~ 1236 (1262)
++.++ .+|+...+...+..++.+.
T Consensus 450 ~eale--~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 450 QEALE--LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHh--cCchhHHHHHHHHHHHHHh
Confidence 99999 6899999999999999863
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=1.7e-08 Score=121.67 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHh---------cCchhHHHHHHHHHHHc
Q 000837 213 SNEIFSNLIQGYVG-----VGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVK---------MKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 213 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~---------~~~~~~A~~~~~~m~~~ 278 (1262)
+.+.|...+++-.. .+.+++|+..|++..+..+. +...|..+..++.. .+++++|...++++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45555544444211 24568999999999988655 56677777665542 24589999999999998
Q ss_pred CCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcc-c
Q 000837 279 GNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVL-A 356 (1262)
Q Consensus 279 g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~ 356 (1262)
++. +..++..+...+...|++++|...++++++.+ +.+...+..+...|...|++++|+..+++. ...|+.. .
T Consensus 334 dP~----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 334 DHN----NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred CCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 864 67788888889999999999999999999886 556788888999999999999999999998 5556543 3
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 000837 357 GNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPD-VHTYNSLISGMF 435 (1262)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~ 435 (1262)
+..++..+...|++++|...+++......+-+...+..+...+...|++++|...+.++... .|+ ....+.+...|+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 44555567778999999999999886542224455777888888999999999999987666 333 444555666777
Q ss_pred hcCChHHHHHHHHHHHhC-CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 000837 436 KEGMSKHAKEILDEMVNR-GITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLI 491 (1262)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 491 (1262)
..| ++|...++.+.+. +..|....+..++ |.-.|+-+.+..+ +++.+.+..
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccchH
Confidence 777 4777777776663 2223333333333 4446666767666 888777653
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3e-06 Score=93.80 Aligned_cols=458 Identities=15% Similarity=0.109 Sum_probs=218.1
Q ss_pred HHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHH--hcC
Q 000837 707 VECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLC--KEK 784 (1262)
Q Consensus 707 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~--~~~ 784 (1262)
++.+...|++++|.+...+++...|+. ..++..-+.++.+.+.+++|+.+.+.-... ..+...+ +=.+|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd-~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDD-EDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCc-HhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 455667888999999999988887763 344445555677777777777554431110 0111111 234444 567
Q ss_pred CHHHHHHHHHHHhhCCCCCC-hhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC-chHHhHHHHHHHHhhcCCHHHHHHH
Q 000837 785 KFSVAFKMLDSMLDKNMAPC-LDVSVSLIPQLFRTGRLEKAVALREISLKEQPL-LLFSFHSAFISGFCVTGKAEEASKL 862 (1262)
Q Consensus 785 ~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 862 (1262)
..++|+..++ |..+. ..+...-...+.+.|++++|..+|+.+.+.+.. .+...-..++.+ + .+..
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~---a~l~- 160 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----A---AALQ- 160 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----H---Hhhh-
Confidence 7777777766 22222 235555566677777777777777777655332 111111111111 0 0001
Q ss_pred HHHHHHCCCCCCHHhHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 000837 863 FRDMLSQGMLLEDEVYNMLIQ---GHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQ 939 (1262)
Q Consensus 863 ~~~m~~~g~~pd~~t~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 939 (1262)
-+.+......| ..+|..+.+ .+...|++.+|++++....+.+.. .++ .++.. -..+-+++
T Consensus 161 ~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~-eEeie~el--- 223 (652)
T KOG2376|consen 161 VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN-EEEIEEEL--- 223 (652)
T ss_pred HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc-hhhHHHHH---
Confidence 11122222222 223333332 334567777777777766433210 000 00000 00000000
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH----HHHHHHhhcCCChh--HHHHHHHHHHHCC---
Q 000837 940 NKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTY----NFLIYGFSKHKDVS--SSKYYIAAMVSKG--- 1010 (1262)
Q Consensus 940 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~----~~li~~~~~~g~~~--~A~~~~~~m~~~g--- 1010 (1262)
...-..|...+...|+.++|..++...+.... +|.... |.|+.. ....++- .++..++......
T Consensus 224 -----~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 224 -----NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred -----HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHH
Confidence 00112334445556666666666666655532 233221 112111 1111111 1111111111100
Q ss_pred ----C---CCChhcH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC
Q 000837 1011 ----F---NPSNRSL-RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSR-GKLQEAEHFLDQIVDKDL 1081 (1262)
Q Consensus 1011 ----~---~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~ 1081 (1262)
+ .-..... +.++..| .+..+.+.++...+.. ..|....-..+..+.... ..+..|.+++...-+...
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 0 0000111 1122222 3344445554444332 233333333333332222 246677777777665422
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHC--C---
Q 000837 1082 VPDTINYDNLIKRFCGYGRLDKAVDLLN--------IMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHAEMMAR--D--- 1147 (1262)
Q Consensus 1082 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~--~--- 1147 (1262)
.-...+.-.++......|+++.|++++. .+.+.+..|..+.+...+.. .++.+-|.+++.+.++- .
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 2123445555566677888888888887 55555666776665554444 44444455554444430 0
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 000837 1148 LKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQA 1212 (1262)
Q Consensus 1148 ~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1212 (1262)
..+ -..++..++..=.+.|+-++|..+++++.+.. ++|..+...++.+|+.. |.++|..+-+.
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 111 12334444444556688888888888888752 66777777777777765 55777766553
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.4e-06 Score=96.39 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH--------HHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCC--Cch--
Q 000837 772 AYSHLIRGLCKEKKFSVAFKMLD--------SMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQP--LLL-- 839 (1262)
Q Consensus 772 ~~~~li~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~-- 839 (1262)
....++......|+++.|++++. .+.+.+..| .+...+...+.+.++-+.|..+++....... .+.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 33444555556677777777766 444444444 4555666677777777777777766543210 011
Q ss_pred --HHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 000837 840 --FSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLS 899 (1262)
Q Consensus 840 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~ 899 (1262)
...+..+...-.+.|+.++|..+++++.+.+. +|..+...++.+|+.. +++.|..+-.
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 12233333444566888888888888887443 4777777777777654 4555555543
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=2.6e-08 Score=106.91 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHH
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 257 (1262)
+..+..++..+...|++++|...+.++.+.. |.+...+..+...|...|++++|...|++..+.++. +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 4455555555555555555555555555443 334455555555555555555555555555544322 3334444444
Q ss_pred HHHhcCchhHHHHHHHHHHH
Q 000837 258 HLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~ 277 (1262)
.+...|++++|...|++.+.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHcccHHHHHHHHHHHHh
Confidence 44455555555555544443
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.06 E-value=3.8e-08 Score=105.65 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~ 278 (1262)
..+..+...|...|++++|...|++..+..+. +...+..+...+...|++++|...|++.++.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444555555555555555555554443221 2344444444444444444444444444443
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=6.2e-09 Score=105.35 Aligned_cols=230 Identities=12% Similarity=0.075 Sum_probs=137.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHH-HHHHHHHh
Q 000837 949 NILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLR-SVISCLCE 1027 (1262)
Q Consensus 949 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~ 1027 (1262)
+.|...|.+.|.+.+|.+.|+..++. .|-..||..|-.+|.+..++..|+.++.+-++. .|-.++|. .+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45667777777777777777766664 345556666667777777777777777766663 44444443 35556666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 000837 1028 VGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDL 1107 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1107 (1262)
.++.++|.++++...+.. +.+......+...|.-.++++.|+.++.++++.|+. +...|+.+..+|...+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 667777777777666541 233445555555666666666666666666666655 555666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 000837 1108 LNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQ 1187 (1262)
Q Consensus 1108 ~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~ 1187 (1262)
|.+.+.---.|+. ..++|..++....-.||+.-|.+-|.-.+..+ ..+.
T Consensus 381 f~RAlstat~~~~------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ 429 (478)
T KOG1129|consen 381 FQRALSTATQPGQ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHG 429 (478)
T ss_pred HHHHHhhccCcch------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccC-cchH
Confidence 6665543212221 23455555555555566666655555555431 3335
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1188 EMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1188 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
..++.|+-.-.+.|+.++|..++..+..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5555555555555666666665555544
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=3.7e-06 Score=97.46 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 000837 878 YNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMS 957 (1262)
Q Consensus 878 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 957 (1262)
+..+.+.|...|++++|++..+..++..+. .+..|..-...+-+.|++.+|.+.++...+.+.. |-..-+..+..+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 344445555555555555555555554211 2344445555555555555555555555544221 33333444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHh--------hHHHHHHHhhcCCChhHHHHHHHHHHH
Q 000837 958 SGNIFHVKRVLDELQENELLPDEV--------TYNFLIYGFSKHKDVSSSKYYIAAMVS 1008 (1262)
Q Consensus 958 ~g~~~~A~~~~~~m~~~g~~pd~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~ 1008 (1262)
.|+.++|.+++....+.+..|-.. -..-...+|.+.|++..|+..|..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 566666655555554443322111 112334456666666666666555554
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=1.9e-06 Score=99.85 Aligned_cols=290 Identities=14% Similarity=0.085 Sum_probs=182.5
Q ss_pred HHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhc-----C
Q 000837 745 LCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRT-----G 819 (1262)
Q Consensus 745 ~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g 819 (1262)
+...|.+++|++.++.-... +.............+.+.|+.++|...+..++++++ .+..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccc
Confidence 34444444444444432221 222345556667888889999999999999988763 3444444455554222 2
Q ss_pred CHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCH-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 000837 820 RLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKA-EEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELL 898 (1262)
Q Consensus 820 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~ 898 (1262)
+.+...++++.+....|..+..-.-.| .+.....+ ..+...+..+..+|+++ +|+.+-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L--~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPL--DFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhc--ccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 567778888888776554333222221 12222223 24556667777888753 5666666666555666666666
Q ss_pred HHHHHC----C----------CccCh--hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 000837 899 SAMIRK----R----------LSLSI--SSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIF 962 (1262)
Q Consensus 899 ~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 962 (1262)
..+... + -.|+. .++..+...|-..|++++|+..++..++..+. .+..|..-...|-..|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 665543 1 12333 24455677777888888888888888876322 3556777788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhc------H--HHHHHHHHhcCChhHH
Q 000837 963 HVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRS------L--RSVISCLCEVGELGKS 1034 (1262)
Q Consensus 963 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~------~--~~li~~~~~~g~~~~A 1034 (1262)
+|.+.++.....+. -|...-+-.+..+.+.|++++|.+++....+.+..|-... | .....+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888888877643 3666667777788888888888888888877654332211 1 2345578888888888
Q ss_pred HHHHHHHHH
Q 000837 1035 LELSQEMRL 1043 (1262)
Q Consensus 1035 ~~~~~~~~~ 1043 (1262)
++.|..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 887776665
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3e-06 Score=89.20 Aligned_cols=289 Identities=10% Similarity=0.048 Sum_probs=203.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 000837 885 HCEANNLRKVRELLSAMIRK-RLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFH 963 (1262)
Q Consensus 885 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 963 (1262)
.+..++-..+...+-.+... .+..+......+.+.+...|+.++|+..|+.....++. +...-....-.+.+.|+.++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhh
Confidence 34455555555555444333 35567778888999999999999999999988765221 22222233344677889988
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 000837 964 VKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEVGELGKSLELSQEMR 1042 (1262)
Q Consensus 964 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 1042 (1262)
...+-..+.... .-....|-.-........+++.|+.+-++.++. .| +...|-.-...+...|+.++|.-.|+..+
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 888877776642 122333444444455677889999999888873 33 33344444557888999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH-HHHH-hcCChHHHHHHHHHHHhC--CCCC
Q 000837 1043 LKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLI-KRFC-GYGRLDKAVDLLNIMLKK--GSTP 1118 (1262)
Q Consensus 1043 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~--~~~p 1118 (1262)
.. -+-+...|..|+..|...|++.+|..+-+..... +..+..+...+. ..+. ..-.-++|.+++++-++. ++.|
T Consensus 362 ~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 362 ML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred hc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 75 2335889999999999999999999888877653 233455555442 3332 233458899999888774 2233
Q ss_pred CHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1119 NSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1119 ~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
.+.-...+....|+.+++++++++.+. ..||....+.|+..+...+.+++|+..|..++..
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333334444448999999999999987 7789999999999999999999999999999874
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=1e-07 Score=104.83 Aligned_cols=234 Identities=14% Similarity=0.071 Sum_probs=162.4
Q ss_pred CChhHHHHHHHHHHHC-CCCCC--hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 000837 994 KDVSSSKYYIAAMVSK-GFNPS--NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAE 1070 (1262)
Q Consensus 994 g~~~~A~~~~~~m~~~-g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 1070 (1262)
+..+.++.-+.+++.. ...|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4556677777777753 12222 2346666777888888889988888888752 234788899999999999999999
Q ss_pred HHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHcccCChhHHHHHHHHHHHC
Q 000837 1071 HFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS---YDSIISTCNKLDPAMDLHAEMMAR 1146 (1262)
Q Consensus 1071 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~~g~~~~A~~~~~~~~~~ 1146 (1262)
..|+++++ +.|+ ..+|..+..++...|++++|++.+++.++. .|+... +..+....++.++|.+.+++....
T Consensus 119 ~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999987 4565 678888888888899999999999998885 344321 222222277889999999776542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 000837 1147 DLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLG-----DT-PTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSP 1220 (1262)
Q Consensus 1147 ~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~-----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 1220 (1262)
..|+ .|. ........|+..++ +.++.+.+.. .. .....|..++..+.+.|++++|+..|+++++.+ .|
T Consensus 195 -~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 195 -LDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred -CCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 2333 232 23344456666554 3455554310 11 135688999999999999999999999999842 45
Q ss_pred ChhhHHHHHHHhhccccc
Q 000837 1221 DFSTHWSLISNLRNSNDK 1238 (1262)
Q Consensus 1221 ~~~~~~~~l~~l~~~~~~ 1238 (1262)
++..+...+.++....+.
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 777787777777775544
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=2.8e-08 Score=100.73 Aligned_cols=232 Identities=10% Similarity=-0.023 Sum_probs=159.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 000837 877 VYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLM 956 (1262)
Q Consensus 877 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 956 (1262)
--+.+..+|.+.|.+.+|...++..+++ .|-+.+|-.|-+.|.+..+...|+.+|.+-.+. ++.++....-+.+.+-
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 3455666777777777777777766665 344556666677777777777777777666654 2224444445566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHH
Q 000837 957 SSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLE 1036 (1262)
Q Consensus 957 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 1036 (1262)
..++.++|.++++...+.. ..+.....++..+|...++++.|+.+|+++++.|+ .+...|..+.-||.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 7777788888887777642 22344445555667777888888888888888775 355667777777777788888888
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1037 LSQEMRLKGLVHD--SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1037 ~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
-|+.....--.|+ ..+|..|.......||+..|...|+-.+..+.. +...+|.|.-.-.+.|+.++|..+++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8887776544444 567777777777888888888888877764322 3677888877777888888888888776654
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=6.3e-08 Score=110.28 Aligned_cols=243 Identities=16% Similarity=0.165 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC-----CCc-cCh-hhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCc
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGR-----GLV-PFL-SCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEK 287 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~~-~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 287 (1262)
.++..|...|..+|++++|...|.+..+. |.. |.+ ...+.+...|...+++++|..+|++++..-..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~------ 273 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE------ 273 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------
Confidence 44555667777777777777777665443 111 111 22333445555555555555555555442211
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---------CCCCCccc-H
Q 000837 288 DSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM---------KCTPDVLA-G 357 (1262)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~~-~ 357 (1262)
......+--..+++.|...|++.|++++|...+++. ...|++.+ +
T Consensus 274 -------------------------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 274 -------------------------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred -------------------------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 000011111234555555666666666666555554 12233322 4
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHC---CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCC-
Q 000837 358 NRIIHTLCSIFGSKRADLFVQELEHS---GFRPD----EITFGILIGWTCREGNLRSALVFFSEILSR----GL--NPD- 423 (1262)
Q Consensus 358 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p~- 423 (1262)
+.++..++..+++++|..+++...+. -+.++ ..+|+.|...|...|++++|.++|.+.+.. +. .+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 56666777778888888777654432 12333 347899999999999999999999987633 12 222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-ccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 000837 424 VHTYNSLISGMFKEGMSKHAKEILDEMVNR----GI-TPS-LSTYRILLAGYCKARQFDEAKIMVSEMAKS 488 (1262)
Q Consensus 424 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 488 (1262)
...++-|...|.+.+++++|.++|.+...- |. -|+ ..+|.-|...|.+.|++++|.++.+.....
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456778888899999999999999876542 32 123 468888999999999999999999887743
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=1.9e-07 Score=106.35 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=116.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHC-----CC-CCC-hhcHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCC-CC-HH
Q 000837 986 LIYGFSKHKDVSSSKYYIAAMVSK-----GF-NPS-NRSLRSVISCLCEVGELGKSLELSQEMRL-----KGLV-HD-SI 1051 (1262)
Q Consensus 986 li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~-~~-~~ 1051 (1262)
+...|...+++++|..+|++++.. |- .|. ..+++.|..+|.+.|++++|..+++...+ .|.. |. ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555555566666655555531 10 111 12334444455556665555555554433 1111 11 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDK---DLVPD----TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYD 1124 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1124 (1262)
.++.++..+...+++++|..+++...+. -..++ ..+++.|...|...|++++|.+++++.++..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~--------- 397 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL--------- 397 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---------
Confidence 3444555566666666666666554431 01111 2356666666666666666666666555420
Q ss_pred HHHcccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CC-CHHHHHHHHHHH
Q 000837 1125 SIISTCNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQ----LGD-TP-TQEMYSSVVNRY 1197 (1262)
Q Consensus 1125 ~ll~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~----~~~-~p-~~~~~~~l~~~~ 1197 (1262)
++.. .+..+ ....++.++..|.+.+++++|.++|.+... .|. .| ...+|..|+..|
T Consensus 398 ----------------~~~~-~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 398 ----------------RELL-GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred ----------------Hhcc-cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 0000 01122 235678999999999999999999887764 221 22 368888999999
Q ss_pred HhcCCHhHHHHHHHHHHH
Q 000837 1198 SLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1198 ~~~g~~~~A~~~~~~~~~ 1215 (1262)
...|++++|.++.+++..
T Consensus 461 ~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHcccHHHHHHHHHHHHH
Confidence 999999999999998774
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=8.2e-08 Score=93.58 Aligned_cols=196 Identities=17% Similarity=0.181 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS----SSYDSI 1126 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l 1126 (1262)
+...|.-.|...|+...|..-++++++. .|+ ..+|..+...|.+.|+.+.|.+.|++.++. .|+. ..|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3444556667777777777777777763 343 556666667777777777777777776664 2321 136666
Q ss_pred HcccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 000837 1127 ISTCNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1127 l~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 1205 (1262)
++..|++++|...|++....-.-| -+.+|.+++.+..+.|+.+.|+..|++.++.. +-.+.....+.+.....|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 666667777777777776421111 35688888888889999999999999988852 3346677788888889999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhccccccccccchhhhhhhhc
Q 000837 1206 ASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLSRLLS 1253 (1262)
Q Consensus 1206 A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1253 (1262)
|...+++.+..+. +..+..|..|.--...++.+.+...+.-|.+.-+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999998888754 7777777777777777766666555555555443
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.9e-06 Score=86.51 Aligned_cols=313 Identities=17% Similarity=0.115 Sum_probs=178.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHH-HHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYR-VFINHL 259 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~l 259 (1262)
+...+..|.+..+|.+|++++....+.. |.+....+.|...|....++.+|-++|+++-..-++ ..-|. .-..++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHH
Confidence 5666777778888888888887776665 445566777888888888888888888877665332 22222 123455
Q ss_pred HhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCC
Q 000837 260 VKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNE--VAYGYCEKKD 337 (1262)
Q Consensus 260 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~ 337 (1262)
.+.+.+..|+++...|... +....-.. -.......++
T Consensus 89 Y~A~i~ADALrV~~~~~D~-----------------------------------------~~L~~~~lqLqaAIkYse~D 127 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-----------------------------------------PALHSRVLQLQAAIKYSEGD 127 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-----------------------------------------HHHHHHHHHHHHHHhccccc
Confidence 5666666666665555221 11110000 0112245677
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 338 FEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHS-GFRPDEITFGILIGWTCREGNLRSALVFFSEIL 416 (1262)
Q Consensus 338 ~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 416 (1262)
+..+..+.+......+..+.+...-...+.|++++|++-|++..+- |..| -..|+..+..| +.|+++.|+++..+++
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEII 205 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 7777777777744455566666666677889999999999887765 6555 46777655544 7789999999999999
Q ss_pred hCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 000837 417 SRGLNPDVH----TYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIE 492 (1262)
Q Consensus 417 ~~g~~p~~~----~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 492 (1262)
++|++.... .-+-.|++ ..+..-.. |...+ =+..+|.-...+.+.|+++.|.+-+..|.-+.-.+
T Consensus 206 eRG~r~HPElgIGm~tegiDv----rsvgNt~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDV----RSVGNTLV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HhhhhcCCccCccceeccCch----hcccchHH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 888652211 01111110 00000000 00000 01223333344556677777777766665333211
Q ss_pred cCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHH
Q 000837 493 LSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVH 570 (1262)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~ 570 (1262)
.|+.|..++.-. -..+++.+..+.+.-.+...|-|. |..++-.||
T Consensus 275 --------------------------------lDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 275 --------------------------------LDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred --------------------------------CCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 233333322111 123344444455555555555555 667777777
Q ss_pred hcCCHHHHHHHHHH
Q 000837 571 ARGNLKAALLLVDE 584 (1262)
Q Consensus 571 ~~g~~~~A~~~~~~ 584 (1262)
++.-++-|-+++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 77777777776654
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=2.1e-07 Score=102.43 Aligned_cols=222 Identities=10% Similarity=-0.052 Sum_probs=146.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCch
Q 000837 188 LIRVGMLKEVELLLLAMEREGI-LL-KSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVT 265 (1262)
Q Consensus 188 l~~~~~~~~a~~~l~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~ 265 (1262)
+...+..+.+..-+.+++.... .+ ..+..|..++..|...|+.++|+..|++..+..+. +...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCH
Confidence 3334455666666767765321 11 22456778888888889999999999888887654 678888888888899999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 000837 266 HLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFF 345 (1262)
Q Consensus 266 ~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 345 (1262)
+.|...|++.++..+. +..+|..+..++...|++++|.+.+++..+.. +.+.. .......+...++.++|...|
T Consensus 115 ~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~-~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 115 DAAYEAFDSVLELDPT----YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPY-RALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHccCCHHHHHHHH
Confidence 9999999888887643 45677777788888888888888888888764 22331 112222234556788888888
Q ss_pred HHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHC---CC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000837 346 TEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHS---GF---RPDEITFGILIGWTCREGNLRSALVFFSEILS 417 (1262)
Q Consensus 346 ~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~---~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 417 (1262)
.+. ...|+...+ .......|+..++ +.+..+.+. .+ +....+|..+...+.+.|++++|...|++..+
T Consensus 189 ~~~~~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 189 KQRYEKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHhhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665 333333322 2223335555444 344444421 11 11234677788888888888888888888876
Q ss_pred CCC
Q 000837 418 RGL 420 (1262)
Q Consensus 418 ~g~ 420 (1262)
..+
T Consensus 265 ~~~ 267 (296)
T PRK11189 265 NNV 267 (296)
T ss_pred hCC
Confidence 653
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=3.1e-05 Score=79.75 Aligned_cols=305 Identities=11% Similarity=0.064 Sum_probs=135.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcC
Q 000837 811 LIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNM-LIQGHCEAN 889 (1262)
Q Consensus 811 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~g 889 (1262)
+...+...|++.+|+.-|+...+.+|. +-.++-.-...|...|+..-|+.-+.+.++ .+||-..-.. -...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 334444455555555555555443222 111111222345555555555555555555 4455432211 112344566
Q ss_pred CHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 000837 890 NLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLD 969 (1262)
Q Consensus 890 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 969 (1262)
.+++|..-|+.+++....... ...++.+.-..++-. .....+..+...|+...|++...
T Consensus 121 ele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHH
Confidence 666666666666554321110 011111111111111 11122333445566666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 000837 970 ELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD 1049 (1262)
Q Consensus 970 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 1049 (1262)
.+++. ...|...|..-..+|...|++..|+.-++...+.. ..+...+..+-..+...|+.+.++..+++.++ +.||
T Consensus 180 ~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 180 HLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 66654 23355555555566666666666666555555532 22333344444455566666666666666655 3344
Q ss_pred HHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 000837 1050 SIVQNAI-------------AEGLLSRGKLQEAEHFLDQIVDKDLVPDTIN---YDNLIKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1050 ~~~~~~l-------------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
....... +......+++.++++..+..++....-..+. +..+-.++...+++.+|++...+.++
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 2211110 1112234455555555555554322211112 22223344455555566655555554
Q ss_pred CCCCCC-HHHHHHHHcc---cCChhHHHHHHHHHHH
Q 000837 1114 KGSTPN-SSSYDSIIST---CNKLDPAMDLHAEMMA 1145 (1262)
Q Consensus 1114 ~~~~p~-~~~~~~ll~~---~g~~~~A~~~~~~~~~ 1145 (1262)
. .|+ +.++.--..+ ...+++|+.-|++..+
T Consensus 336 ~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 336 I--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred c--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2 333 2222221111 3445555555555554
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=1.2e-05 Score=82.68 Aligned_cols=340 Identities=11% Similarity=0.069 Sum_probs=211.4
Q ss_pred hHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHH-HH
Q 000837 839 LFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLED-EVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYR-NL 916 (1262)
Q Consensus 839 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l 916 (1262)
++.-..-+.+.+...|++.+|+..|....+- .|+. .++-.-...|...|+-.-|+.-+...++. +||-..-+ .-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3334445677788889999999999998872 2332 23333344677778888888888887775 45543222 23
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCCh
Q 000837 917 VRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDV 996 (1262)
Q Consensus 917 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 996 (1262)
...+.+.|.++.|..-|+.+++..++.+. ..+|.+-+....+ .......+..+.-.||.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~---------------~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL---------------VLEAQSKLALIQE------HWVLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch---------------hHHHHHHHHhHHH------HHHHHHHHHHHhcCCch
Confidence 45677889999999888888876433211 1111111111111 11223334455678999
Q ss_pred hHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 997 SSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQI 1076 (1262)
Q Consensus 997 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 1076 (1262)
..|+.....+++.. ..|...|..-..||...|.+..|+.-++...+.. ..+.....-+-..+...|+.+.++....+-
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999842 3366667777889999999999998888776642 334666667778888899999999999988
Q ss_pred HhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCC-----
Q 000837 1077 VDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPS----- 1151 (1262)
Q Consensus 1077 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~----- 1151 (1262)
++ +.||...... .|-+.....+.++-.++.++ .++|-++++..++.++ ..|.
T Consensus 250 LK--ldpdHK~Cf~---~YKklkKv~K~les~e~~ie----------------~~~~t~cle~ge~vlk--~ep~~~~ir 306 (504)
T KOG0624|consen 250 LK--LDPDHKLCFP---FYKKLKKVVKSLESAEQAIE----------------EKHWTECLEAGEKVLK--NEPEETMIR 306 (504)
T ss_pred Hc--cCcchhhHHH---HHHHHHHHHHHHHHHHHHHh----------------hhhHHHHHHHHHHHHh--cCCccccee
Confidence 87 5677432211 12222222222222222222 2455566666666665 2332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 000837 1152 MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISN 1231 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 1231 (1262)
...+..+..++...|++.+|++...++++. .+.|..++.--..+|.....++.|+.-|+++++ ..|++...-.-+..
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNTRAREGLER 383 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccHHHHHHHHH
Confidence 234455666666677777777777777763 133366777777777777777777777777777 56665554444433
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=1e-06 Score=86.07 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHH
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVV 294 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~ 294 (1262)
.+...|.-.|.+.|++..|..-+++..+.++. +..+|..+...|-+.|+.+.|.+.|++.+...+. +....|...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN----NGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----ccchhhhhh
Confidence 45567888999999999999999999998765 7788999999999999999999999999888764 677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCC-CcccHHHHHHHHHhhCChh
Q 000837 295 RLLCRDRKIQESRNLVRKAMAFG-LEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTP-DVLAGNRIIHTLCSIFGSK 371 (1262)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~ 371 (1262)
..+|..|++++|.+.|++....- +..-..+|.-+.-+..+.|+.+.|.+.|++. ...| ...+.-.+.....+.|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 88888888888888888877632 2223456666666666778888888888777 3333 3455666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000837 372 RADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSR 418 (1262)
Q Consensus 372 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 418 (1262)
.|..+++.....+. ++..+.--.|..--..|+.+.|-++=.++.+.
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777776653 66666666666666677777777665555544
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=9.8e-06 Score=93.23 Aligned_cols=309 Identities=8% Similarity=-0.031 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGI-LLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
.+.+|..++..+...++.+.+..-+....+... ..+..+........+...|++++|...+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 467788888888888888887666666554432 2223344445556678899999999999998887544 4444442
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 256 INHLVKMKVTHLAFRVCVDMVVMGNNLTDLE-KDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCE 334 (1262)
Q Consensus 256 ~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 334 (1262)
...+...+....+.....+.+..... ..|+ ......+...+...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 22333333333333333333332211 1133 3344556677889999999999999999876 6667888899999999
Q ss_pred cCCHHHHHHHHHHc-CCC---CCcc--cHHHHHHHHHhhCChhHHHHHHHHHHHCCC-CCCHHhH-H--HHHHHHHhcCC
Q 000837 335 KKDFEDLLSFFTEM-KCT---PDVL--AGNRIIHTLCSIFGSKRADLFVQELEHSGF-RPDEITF-G--ILIGWTCREGN 404 (1262)
Q Consensus 335 ~g~~~~A~~~~~~~-~~~---p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~ty-~--~li~~~~~~g~ 404 (1262)
.|++++|+..+++. ... |+.. .|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999988 322 2322 355788889999999999999999864432 1222211 2 23333444555
Q ss_pred HHHHHHH--HHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCcc---CH---HHHHHHH--HHHHHc
Q 000837 405 LRSALVF--FSEILSRGLNPDVHTY--NSLISGMFKEGMSKHAKEILDEMVNRGITP---SL---STYRILL--AGYCKA 472 (1262)
Q Consensus 405 ~~~A~~~--~~~m~~~g~~p~~~~y--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~---~~~~~li--~~~~~~ 472 (1262)
.+.+.++ +..............+ .....++...|+.++|..+++.+......+ .. .+-..++ -++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 5555544 2222111111111222 245667788999999999999987743220 11 1112223 345678
Q ss_pred CCHHHHHHHHHHHHHcC
Q 000837 473 RQFDEAKIMVSEMAKSG 489 (1262)
Q Consensus 473 g~~~~A~~l~~~m~~~~ 489 (1262)
|+.++|.+++.+.....
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.1e-06 Score=90.21 Aligned_cols=232 Identities=11% Similarity=0.052 Sum_probs=140.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHh
Q 000837 427 YNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMI 506 (1262)
Q Consensus 427 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~ 506 (1262)
+.-+.+...+..+++.|.+-++...+.. .+..-++....+|...|.+.++........+.|..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre--------------- 289 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE--------------- 289 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH---------------
Confidence 4556666667777788887777777654 34455556667788888888887777776666542
Q ss_pred cCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 507 LGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMV 586 (1262)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 586 (1262)
...-|+.+... +..+..+|.+.++++.|+..|.+.+
T Consensus 290 -------------------~rad~klIak~-------------------------~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 290 -------------------LRADYKLIAKA-------------------------LARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred -------------------HHHHHHHHHHH-------------------------HHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 11122221111 1123446667777888888887765
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHh
Q 000837 587 RWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENE 666 (1262)
Q Consensus 587 ~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 666 (1262)
..-..|+...-. ...+++.+..+...-.++..-...... ...+.+.|++..|+..+.+++...+. |..
T Consensus 326 te~Rt~~~ls~l----------k~~Ek~~k~~e~~a~~~pe~A~e~r~k-Gne~Fk~gdy~~Av~~YteAIkr~P~-Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLLSKL----------KEAEKALKEAERKAYINPEKAEEEREK-GNEAFKKGDYPEAVKHYTEAIKRDPE-DAR 393 (539)
T ss_pred hhhcCHHHHHHH----------HHHHHHHHHHHHHHhhChhHHHHHHHH-HHHHHhccCHHHHHHHHHHHHhcCCc-hhH
Confidence 533333322111 113333333333322222221112222 45677889999999999999888765 888
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCC
Q 000837 667 SYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPC 732 (1262)
Q Consensus 667 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 732 (1262)
.|....-+|.+.|.+..|++-.+..++.. ++....|..-..++....+++.|.+.|...++.+|.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 89999999999999998888777766653 123334444445555566777777777777665554
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=4e-06 Score=84.30 Aligned_cols=285 Identities=12% Similarity=0.019 Sum_probs=151.3
Q ss_pred HHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHh
Q 000837 530 FDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSV-FSALVKGLCA 606 (1262)
Q Consensus 530 ~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~ 606 (1262)
.+.++..|+...++..|...+++.....|... .---...+.+.+.+..|+.+...|... |+... ...|-.+..-
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence 33444444444444444444444443333333 112344556667777777777666432 22211 1112222223
Q ss_pred CCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhc-CCCCCHhhHHHHHHHHHhcCCHhhHH
Q 000837 607 SRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQR-GLTIENESYTTLLMSLCKKGFIKDLH 685 (1262)
Q Consensus 607 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 685 (1262)
+.+++..+..+.++.... -+..+.+.......+.|+++.|++-|+...+- |.. ....|+..+ +..+.|+++.|+
T Consensus 124 se~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasAL 198 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASAL 198 (459)
T ss_pred ccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHH
Confidence 334477777777776532 25556666666677899999999999998776 444 556676554 455778999999
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhc-
Q 000837 686 AFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQ- 764 (1262)
Q Consensus 686 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~- 764 (1262)
+...+++++|++..++.-..+..--.....+...+.+....+ ..++..-.....+.|+++.|.+.+.+|-..
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 999999998865332211000000000000111111111111 112222223344566666666666665432
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHH
Q 000837 765 GCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREIS 831 (1262)
Q Consensus 765 g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 831 (1262)
....|+++...+.-.- ..+++.+..+-+.-+.+.+.. ...|+..++-.||+..-++.|-.++.+-
T Consensus 272 E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 272 EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 2345666655443221 234444445555555555443 3577888888888888888887776653
No 100
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.75 E-value=0.0014 Score=76.97 Aligned_cols=161 Identities=12% Similarity=0.040 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHc
Q 000837 1052 VQNAIAEGLLSRGKL---QEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIS 1128 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 1128 (1262)
+-+.|++.+.+.++. -+|+-+++..+... +-|..+--.|+..|+..|-...|.++|+.|--+.+.-|...|..+-.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~ 516 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR 516 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH
Confidence 446777778777764 34555555555431 12445556677888888888888888888877777777776666555
Q ss_pred c--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 000837 1129 T--CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLI---SMVQLGDTPTQEMYSSVVNRYSLENNL 1203 (1262)
Q Consensus 1129 ~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~---~~~~~~~~p~~~~~~~l~~~~~~~g~~ 1203 (1262)
. .|++..+...+....+.=-.--.++-..+ ..-++.|.+....+... ++...-..-...+-+......+..++.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI-~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYI-ALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHH-HHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 5 67776666666655541000011222222 23345566665544432 221100011122223455556666777
Q ss_pred hHHHHHHHHHH
Q 000837 1204 GKASELMQAMQ 1214 (1262)
Q Consensus 1204 ~~A~~~~~~~~ 1214 (1262)
++-...++.|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 66666666554
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=2.3e-05 Score=90.06 Aligned_cols=273 Identities=9% Similarity=-0.081 Sum_probs=177.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCc-cCh-hhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcc
Q 000837 211 LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLV-PFL-SCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKD 288 (1262)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 288 (1262)
|+.+..+..+...|...|+.+++...+....+.... ++. .........+...|+++.|...+++.++..+. +..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~ 78 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR----DLL 78 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----cHH
Confidence 556677888888888899999988888876654321 222 22223344567789999999999999987643 333
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHHHH
Q 000837 289 SFHDVVRLLC----RDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIH 362 (1262)
Q Consensus 289 ~~~~l~~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~ 362 (1262)
.+.. ...+. ..+....+.+.+.. .....+.+......+...+...|++++|...+++. ..+.+...+..+..
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3332 21222 24555666665554 11222334455566778889999999999999999 33445677889999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCC-CCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHH
Q 000837 363 TLCSIFGSKRADLFVQELEHSGF-RPDE--ITFGILIGWTCREGNLRSALVFFSEILSRGL-NPDVHTY-N--SLISGMF 435 (1262)
Q Consensus 363 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y-~--~li~~~~ 435 (1262)
++...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 99999999999999998876532 2332 3455788889999999999999999865433 1222211 1 3344444
Q ss_pred hcCChHHHHHH--HHHHHhCCCc--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 000837 436 KEGMSKHAKEI--LDEMVNRGIT--PSLSTYRILLAGYCKARQFDEAKIMVSEMAKSG 489 (1262)
Q Consensus 436 ~~g~~~~A~~l--~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 489 (1262)
..|....+.++ +......... ...........++...|+.++|..+++.+....
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55544444443 2222111111 111222345667788899999999999887643
No 102
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.72 E-value=0.00073 Score=79.26 Aligned_cols=521 Identities=11% Similarity=0.051 Sum_probs=288.8
Q ss_pred hccCCCHHHHHHHHHHHhhcCCCCChHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHH
Q 000837 537 LYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMV--HARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKAC 614 (1262)
Q Consensus 537 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a 614 (1262)
....+++..|.+.+.+++++.|...|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|-..+. .++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~-~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK-LDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh-hhHH
Confidence 345678889999999999998887777777765 5689999999999888765554 78888888888888888 9999
Q ss_pred HHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCC----------HhhH
Q 000837 615 TGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGF----------IKDL 684 (1262)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A 684 (1262)
..++++.....+ +......+..+|.+.+.+.+-.+.--++-.. ++-+.+.+.++++...+.-. ..-|
T Consensus 97 ~~~Ye~~~~~~P--~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQKYP--SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999887644 4777777888888888776644443333332 23366777777776654211 2235
Q ss_pred HHHHHHHHhcC-CCCCcccHHHHHHHHhhhCchHhHHHHH-HHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHH
Q 000837 685 HAFWDIAQNRK-WLPGLEDCKSLVECLCHKKLLKESLQLF-ECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELL 762 (1262)
Q Consensus 685 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~ 762 (1262)
...++.+.+.+ -.-+..-.......+...|++++|.+++ ....+..+..+...-...+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666666654 1111111222233455678888888888 334444455455555566667777788888888887777
Q ss_pred hcCCCCChhhHHHHHHHHHh----------------cCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHH
Q 000837 763 QQGCNLDQMAYSHLIRGLCK----------------EKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVA 826 (1262)
Q Consensus 763 ~~g~~~d~~~~~~li~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 826 (1262)
..|... |...++.+.+ .+..+...+..............-..-.+...+..-|+.+++.-
T Consensus 254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 775332 3332222111 11222222222222211111001111112222234466666543
Q ss_pred HH-HHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHHhcCC-----HHH
Q 000837 827 LR-EISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDE-------VYNMLIQGHCEANN-----LRK 893 (1262)
Q Consensus 827 ~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~~~~~~g~-----~~~ 893 (1262)
.| ++.-.. + .|..=+..|...=..+.-..++...... .++.. .+...+..-...|. -+.
T Consensus 330 ~y~~kfg~k-p-----cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 330 YYFKKFGDK-P-----CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HHHHHhCCC-c-----HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 33 222211 1 1111122222222222222333332221 11111 01111111112221 122
Q ss_pred HHHHHHHHH---HCC------CccChh---------hHHHHHHHHHhcCChhh---HHHHHHHHHhCCCCCCcchHHHHH
Q 000837 894 VRELLSAMI---RKR------LSLSIS---------SYRNLVRWMCMEGGVPW---ALNLKELMLGQNKSHNLIIFNILV 952 (1262)
Q Consensus 894 a~~~~~~~~---~~~------~~~~~~---------~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li 952 (1262)
...++.+.. ++| +.|+.. +.+.|++.+.+.++... |+-+++...... +.|..+=-.+|
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHH
Confidence 233332221 222 223332 34567788888877664 555555554432 22445555778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChh
Q 000837 953 FHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELG 1032 (1262)
Q Consensus 953 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 1032 (1262)
+.|.-.|-+..|.++|+.+.-+.+..|...|..+ .-+...|++..+...++...+- +..+..--.-+|..-.+.|.+.
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~yS 558 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYS 558 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchh
Confidence 8999999999999999999888787776666443 4455677888888888776652 0111111112333334556665
Q ss_pred HHHHHHH---HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1033 KSLELSQ---EMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1033 ~A~~~~~---~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
+..++.. .+...-......+-+..++.++..++.++-...+..|.
T Consensus 559 kI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 559 KIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 5554432 22222112224455777888888899888888888776
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.59 E-value=9.2e-05 Score=96.99 Aligned_cols=262 Identities=15% Similarity=0.064 Sum_probs=124.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHhhcCCChhHHHHHHHHHHHC--CC-CC--ChhcHHHHHHHH
Q 000837 955 LMSSGNIFHVKRVLDELQENELLPDE----VTYNFLIYGFSKHKDVSSSKYYIAAMVSK--GF-NP--SNRSLRSVISCL 1025 (1262)
Q Consensus 955 ~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p--~~~~~~~li~~~ 1025 (1262)
+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... .. .+ ....+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 44556666666666555442111111 12333444455566666666666665531 00 01 112223344455
Q ss_pred HhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHhHHHHHHHH
Q 000837 1026 CEVGELGKSLELSQEMRLK----GLV--H-DSIVQNAIAEGLLSRGKLQEAEHFLDQIVDK--DLVP--DTINYDNLIKR 1094 (1262)
Q Consensus 1026 ~~~g~~~~A~~~~~~~~~~----g~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~l~~~ 1094 (1262)
...|++++|...+++..+. +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 5666666666666654431 111 1 1223344455555666666666666665432 1111 12334444555
Q ss_pred HHhcCChHHHHHHHHHHHhCC-CCCCHHHH-------HHHHcc-cCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 000837 1095 FCGYGRLDKAVDLLNIMLKKG-STPNSSSY-------DSIIST-CNKLDPAMDLHAEMMARDLKPS---MNTWHVLVHKL 1162 (1262)
Q Consensus 1095 ~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~-------~~ll~~-~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 1162 (1262)
+...|++++|.+.+....... .......+ ...... .|+.+.|...+........... ...+..++.++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 566666666666666654320 00000000 000011 5666666666555432110001 11134555666
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1163 CQEGRTTEAERLLISMVQL----GDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1163 ~~~g~~~~A~~l~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
...|++++|..+++++.+. |...+ ..+...++.++...|+.++|...+.++++.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677777777777666542 21111 234455666677777777777777766664
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=8.9e-06 Score=90.27 Aligned_cols=227 Identities=15% Similarity=0.071 Sum_probs=143.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhc
Q 000837 183 VMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKM 262 (1262)
Q Consensus 183 ~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~ 262 (1262)
..+..|.+.|.+.+|.-+|+..+++. |...++|..|+......++-..|+..+.+..+.++. +..+.-.|..+|...
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhh
Confidence 45666778888888888888888877 667888888888888888888888888888888765 777888888888888
Q ss_pred CchhHHHHHHHHHHHcCCCCC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcC
Q 000837 263 KVTHLAFRVCVDMVVMGNNLT-----DLEKDSFHDVVRLLCRDRKIQESRNLVRKA-MAFGLEPSSLVFNEVAYGYCEKK 336 (1262)
Q Consensus 263 ~~~~~A~~~~~~m~~~g~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g 336 (1262)
|.-..|+..++++++..++.. .++...-+. ..+.....+....++|-++ ...+..+|+.++..|.-.|.-.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 888888888888877664311 000000000 1111122233333333333 23443456666666666666666
Q ss_pred CHHHHHHHHHHc-CCCC-CcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHH
Q 000837 337 DFEDLLSFFTEM-KCTP-DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPD-EITFGILIGWTCREGNLRSALVFFS 413 (1262)
Q Consensus 337 ~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~ 413 (1262)
+++.|...|+.. ..+| |...||.|...++...+.++|+.-+++..+. +|+ +.....|.-.|...|.+++|.+.|-
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777766666 3333 4556666666666666666666666666653 444 2222224445666666666666555
Q ss_pred HHH
Q 000837 414 EIL 416 (1262)
Q Consensus 414 ~m~ 416 (1262)
+.+
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 443
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=2.5e-06 Score=92.17 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=91.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHH----Hhc
Q 000837 953 FHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCL----CEV 1028 (1262)
Q Consensus 953 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~ 1028 (1262)
.++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. ..|. +...+..++ .-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCc
Confidence 3455567777776665432 23444555666777777777777777777663 2332 222233322 223
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh-HHHHHH
Q 000837 1029 GELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRL-DKAVDL 1107 (1262)
Q Consensus 1029 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~ 1107 (1262)
+.+.+|..+|+++.+. +.+++.+.+.++.++...|++++|.+++++..+.+.. +..+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3677888888887665 5567777788888888888888888888887764322 466666777777777777 556666
Q ss_pred HHHHHhC
Q 000837 1108 LNIMLKK 1114 (1262)
Q Consensus 1108 ~~~~~~~ 1114 (1262)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 6666653
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=9.4e-08 Score=64.70 Aligned_cols=32 Identities=34% Similarity=0.731 Sum_probs=16.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 384 GFRPDEITFGILIGWTCREGNLRSALVFFSEI 415 (1262)
Q Consensus 384 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 415 (1262)
|+.||.+||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=9.6e-08 Score=64.66 Aligned_cols=32 Identities=47% Similarity=0.822 Sum_probs=17.2
Q ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000837 454 GITPSLSTYRILLAGYCKARQFDEAKIMVSEM 485 (1262)
Q Consensus 454 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 485 (1262)
|+.||.+||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.50 E-value=2.8e-06 Score=91.78 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCH
Q 000837 330 YGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCR----EGNL 405 (1262)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~ 405 (1262)
..+...|++++|++++.+. .+.......+..|++.++++.|.+.++.|.+.+ .|. +...+..++.. .+++
T Consensus 110 ~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhH
Confidence 4555566677666666543 234444556667777777777777777776542 232 33333333322 2356
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 000837 406 RSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQF-DEAKIMVSE 484 (1262)
Q Consensus 406 ~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~ 484 (1262)
.+|..+|+++..+ +.++..+.+.+..++...|++++|.+++.+..+.+.. |..+...++......|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 7777777776544 4556666777777777777777777777776654321 334444455555555665 455666666
Q ss_pred HHHcC
Q 000837 485 MAKSG 489 (1262)
Q Consensus 485 m~~~~ 489 (1262)
+....
T Consensus 262 L~~~~ 266 (290)
T PF04733_consen 262 LKQSN 266 (290)
T ss_dssp CHHHT
T ss_pred HHHhC
Confidence 66544
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.3e-05 Score=88.95 Aligned_cols=247 Identities=11% Similarity=0.026 Sum_probs=157.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCH
Q 000837 813 PQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLL-EDEVYNMLIQGHCEANNL 891 (1262)
Q Consensus 813 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~ 891 (1262)
.-+.+.|++.+|.-.|+......|. +..+|..|.......++-..|+..+++.++ +.| +....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhH
Confidence 3456777788888888887777666 677788888888888888888888888877 444 345566666777777877
Q ss_pred HHHHHHHHHHHHCCCccC--------hhhHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCcchHHHHHHHHHhcCCHH
Q 000837 892 RKVRELLSAMIRKRLSLS--------ISSYRNLVRWMCMEGGVPWALNLKELMLG-QNKSHNLIIFNILVFHLMSSGNIF 962 (1262)
Q Consensus 892 ~~a~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 962 (1262)
..|...++..+...++-- ...-.. ........+....++|-++.. .+..+|+.++..|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 888888887766532200 000000 000111112233344444333 333357777778888888888888
Q ss_pred HHHHHHHHHHHCCCCC-CHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCCh-hcHHHHHHHHHhcCChhHHHHHHHH
Q 000837 963 HVKRVLDELQENELLP-DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSVISCLCEVGELGKSLELSQE 1040 (1262)
Q Consensus 963 ~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~ 1040 (1262)
+|++.|+..+.. +| |...||.|...++...+.++|+..|++.++ +.|.. .....|.-+|...|.+++|.+.|-.
T Consensus 448 raiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 888888888774 34 567888888888888888888888888888 45653 2334455567788888888888776
Q ss_pred HHHc---C------CCCCHHHHHHHHHHHHhcCCHHH
Q 000837 1041 MRLK---G------LVHDSIVQNAIAEGLLSRGKLQE 1068 (1262)
Q Consensus 1041 ~~~~---g------~~~~~~~~~~l~~~~~~~g~~~~ 1068 (1262)
.+.. + ..++..+|.+|=.++.-.++.+-
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 6542 1 11123456555555555555543
No 110
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=6e-05 Score=82.66 Aligned_cols=207 Identities=5% Similarity=-0.017 Sum_probs=145.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCc
Q 000837 186 LMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVG-DVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKV 264 (1262)
Q Consensus 186 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~ 264 (1262)
.++...++.++|..+..++++.. |.+..+|+.....+...| ++++++..++++.+.+++ +..+|+.....+.+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 33445567778888888888776 667788888777888887 679999999999988776 66778877777777776
Q ss_pred h--hHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH-
Q 000837 265 T--HLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEK---KDF- 338 (1262)
Q Consensus 265 ~--~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~- 338 (1262)
. +.++.+++++++..++ |..+|+....++...|+++++++.+.++++.+ +.+...|+-....+.+. |+.
T Consensus 122 ~~~~~el~~~~kal~~dpk----Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 122 DAANKELEFTRKILSLDAK----NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred hhhHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccc
Confidence 3 6788999999988765 78889888888888899999999999999876 44556666555544443 222
Q ss_pred ---HHHHHHHHHc--CCCCCcccHHHHHHHHHhh----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 000837 339 ---EDLLSFFTEM--KCTPDVLAGNRIIHTLCSI----FGSKRADLFVQELEHSGFRPDEITFGILIGWTCR 401 (1262)
Q Consensus 339 ---~~A~~~~~~~--~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 401 (1262)
++++.+..++ ..+-|..+|+-+...+... ++..+|.+++.+..+.+ ..+......|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3555555444 3445566777777777662 33455666666655433 2244555556666654
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.00015 Score=95.09 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=29.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCchHHHHHHHHHhhhh
Q 000837 565 LIKMVHARGNLKAALLLVDEMVRW----GQELS-LSVFSALVKGLCASRSHIKACTGLLEKMPKL 624 (1262)
Q Consensus 565 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~ 624 (1262)
+..++...|+.++|...+++.... |..++ ..+...+...+...|+ .++|...+.+..+.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~-~~~A~~~L~~Al~l 760 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR-KSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 444555566666666666555432 11111 1233344445555555 66666666666554
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.0057 Score=67.87 Aligned_cols=207 Identities=13% Similarity=0.122 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000837 996 VSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEV---GELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHF 1072 (1262)
Q Consensus 996 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 1072 (1262)
.+++..++++.+..-..-+...|..+.+---.. ...+...++++++...-..--..+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 455666666666532222333444333311111 13556666666666542221234666777777777778888888
Q ss_pred HHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-HHHHHHHcccCChhHHHHHHHHHHHCCCC
Q 000837 1073 LDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNS-SSYDSIISTCNKLDPAMDLHAEMMARDLK 1149 (1262)
Q Consensus 1073 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~ll~~~g~~~~A~~~~~~~~~~~~~ 1149 (1262)
|.++.+.+..+ +...+++++.-|| .++.+-|.++|+.-+++ |-.|.- .-|...+...|+-..|..+|+++...++.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 88888877666 5667777777665 67888888888877765 322221 12333444477778888888888877666
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHh
Q 000837 1150 P--SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDT----PTQEMYSSVVNRYSLENNLG 1204 (1262)
Q Consensus 1150 p--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~ 1204 (1262)
| ...+|..++.--+.-|+++-+.++-+++... ++ +....-..+.+.|.-.+.+.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhccccc
Confidence 6 3478888888888888888888888877653 22 11122334555565555543
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.41 E-value=0.005 Score=68.25 Aligned_cols=423 Identities=14% Similarity=0.128 Sum_probs=238.0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHH
Q 000837 766 CNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSA 845 (1262)
Q Consensus 766 ~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 845 (1262)
-+-|..+|+.||+-+..+ .++++...++++... .+.....+..-|..-.+.++++..+.+|.+.+..-. +...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 366888999999888777 899999999998754 233456777778888888999999999998876533 4555665
Q ss_pred HHHHHhh-cCCHH----HHHHHHHHHH-HCCCCCCHH-hHHHHH---HH------HHhcCCHHHHHHHHHHHHHCCCccC
Q 000837 846 FISGFCV-TGKAE----EASKLFRDML-SQGMLLEDE-VYNMLI---QG------HCEANNLRKVRELLSAMIRKRLSLS 909 (1262)
Q Consensus 846 li~~~~~-~g~~~----~A~~~~~~m~-~~g~~pd~~-t~~~ll---~~------~~~~g~~~~a~~~~~~~~~~~~~~~ 909 (1262)
.+..-.+ .++.. ...+.|+-.+ +.|+.+-+. .|+..+ .. +....+++...++++.++..-+.-=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5543222 22222 2223333333 334433222 233222 21 1222234445555555544311100
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhh-----
Q 000837 910 ISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQE--NELLPDEVT----- 982 (1262)
Q Consensus 910 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~~----- 982 (1262)
...|+.. . .++..+ |..+-..++ --+...+..|..+++++.. +|+.-...+
T Consensus 172 EkLW~DY----~---~fE~~I-------------N~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 172 EKLWKDY----E---AFEQEI-------------NIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred HHHHHHH----H---HHHHHH-------------HHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 1111111 0 011100 000100000 0112233444444444432 122211111
Q ss_pred ----------HHHHHHHhhcC------CCh--hHHHHHHHHHHH-CCCCCChhcHHH-----HHHHHHhcCC-------h
Q 000837 983 ----------YNFLIYGFSKH------KDV--SSSKYYIAAMVS-KGFNPSNRSLRS-----VISCLCEVGE-------L 1031 (1262)
Q Consensus 983 ----------~~~li~~~~~~------g~~--~~A~~~~~~m~~-~g~~p~~~~~~~-----li~~~~~~g~-------~ 1031 (1262)
|..+|..=... |.. ....-++++.+. .+..|+.....+ .-+.+...|+ .
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 22222211111 000 011112222222 233443321111 1113334444 3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 000837 1032 GKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRG---KLQEAEHFLDQIVDK-DLVPDTINYDNLIKRFCGYGRLDKAVDL 1107 (1262)
Q Consensus 1032 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1107 (1262)
+++..+++..++.-..-+..+|..+.+-=-..- ..+....++++++.. ...| ..+|..+++.-.+..-+..|..+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHH
Confidence 455556665554322234444544443222222 256666777777653 2344 35788888888888899999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHcc--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 000837 1108 LNIMLKKGSTP-NSSSYDSIIST--CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDT 1184 (1262)
Q Consensus 1108 ~~~~~~~~~~p-~~~~~~~ll~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~ 1184 (1262)
|.++.+.+..+ .+..+.+++.. .++..-|.++|+--++. ...++..-...+.-+...|+-+.|..+|++.+..+..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99999987777 67777777776 89999999999998862 3345555578888899999999999999999988666
Q ss_pred CC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1185 PT--QEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1185 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
|+ ..+|..++.--.+-|+...++++-+++...
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66 689999999999999999999999988774
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=6e-05 Score=86.01 Aligned_cols=218 Identities=13% Similarity=0.049 Sum_probs=137.8
Q ss_pred ccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 000837 907 SLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFL 986 (1262)
Q Consensus 907 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 986 (1262)
+|--..-..+...+.+.|-...|..+|+++.. |...+..|...|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34444445566666777777777777766543 556666777777777777776666663 4667777777
Q ss_pred HHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 000837 987 IYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 987 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 1066 (1262)
.+......-+++|.++.+..... .-..+.......+++.++.+.++.-.+. -+....+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhh
Confidence 76666666667777766654432 0111111122356777777777766553 122466777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc--cCChhHHHHHHHHH
Q 000837 1067 QEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST--CNKLDPAMDLHAEM 1143 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--~g~~~~A~~~~~~~ 1143 (1262)
+.|...|..... ..|| ...||++..+|.+.|+..+|...+.+.++.+..|=...-+.++.. -|.+++|++.+.++
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777777766 4555 667777777777777777777777777776654444433333333 67777777777776
Q ss_pred HH
Q 000837 1144 MA 1145 (1262)
Q Consensus 1144 ~~ 1145 (1262)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 65
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=6.4e-06 Score=79.36 Aligned_cols=101 Identities=14% Similarity=-0.007 Sum_probs=84.9
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|...|+.... +.| +...|..++.++.+.|++++|+..++++.+.. +.++..+..++..+...|++++|++
T Consensus 37 ~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 37 EGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred cCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666664 455 77889999999999999999999999999863 5578999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcc
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLRNS 1235 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~~l~~~ 1235 (1262)
.+++.++ ..|++...|...++....
T Consensus 114 ~~~~Al~--~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 114 AFQTAIK--MSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHH--hCCCChHHHHHHHHHHHH
Confidence 9999999 789999888888776653
No 116
>PLN02789 farnesyltranstransferase
Probab=98.35 E-value=0.00016 Score=79.30 Aligned_cols=206 Identities=11% Similarity=0.040 Sum_probs=140.3
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcC-chhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcC
Q 000837 223 GYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMK-VTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDR 301 (1262)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~-~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g 301 (1262)
.+...++.++|+..+.++.+.++. +..+|+.....+.+.+ .+++++..++++++..++ +..+|+.....+.+.|
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk----nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK----NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc----chHHhHHHHHHHHHcC
Confidence 345567888999999999988765 6678888888888887 579999999999988764 5556766655555666
Q ss_pred CH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHhh---CCh----
Q 000837 302 KI--QESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSI---FGS---- 370 (1262)
Q Consensus 302 ~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~---g~~---- 370 (1262)
+. +++..+++++++.. +.+..+|+-...++.+.|++++|++.++++ ..+.|..+|+....++.+. |+.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 53 66788888888765 567777877777788888888888888888 3345566677666555443 222
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 000837 371 KRADLFVQELEHSGFRPDEITFGILIGWTCR----EGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFK 436 (1262)
Q Consensus 371 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~ 436 (1262)
+++.++..++.... +-|...|+-+...+.. .++..+|.+.+.+..+.++ .+......|++.|+.
T Consensus 200 e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 35566665665543 2345566666666655 2344557676666655432 245566666666664
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=0.00016 Score=87.96 Aligned_cols=230 Identities=9% Similarity=0.075 Sum_probs=170.3
Q ss_pred CHhhHHHHHHHhhcCCChhHHHHHHHHHHHC-CCCCC---hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 000837 979 DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSK-GFNPS---NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQN 1054 (1262)
Q Consensus 979 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 1054 (1262)
++..|-..|.-+.+.++.++|.++.++++.. +++-. ...|.++++.....|.-+...++|+.+.+. .....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3467777788888888899999998888873 22222 235677777777778888888899988874 33467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-----HHHHcc
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSY-----DSIIST 1129 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~ll~~ 1129 (1262)
.|...|.+.+.+++|.++++.|.++ .......|..++..+.+..+.+.|..++.+.++. -|...+. ...+..
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999875 3345678888899999998889999999888875 3442221 111222
Q ss_pred -cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhH
Q 000837 1130 -CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT--QEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1130 -~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 1205 (1262)
+|+.+.+..+|+..+. -.| ..+.|+.+++.-.++|+.+.+.++|++++..++.|- --.|...+.---..|+-+.
T Consensus 1612 k~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8999999999999886 334 668899999999999999999999999999888775 3444455544555677555
Q ss_pred HHHHHHHHHH
Q 000837 1206 ASELMQAMQQ 1215 (1262)
Q Consensus 1206 A~~~~~~~~~ 1215 (1262)
+..+=.++.+
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 5444444444
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=8.3e-05 Score=79.53 Aligned_cols=186 Identities=14% Similarity=-0.004 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccCh-
Q 000837 174 FRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSN---EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFL- 249 (1262)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 249 (1262)
....+..+...+..+...|++++|...++++.... |.++ .++..+..+|...|++++|+..|+++.+..+....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 44567889999999999999999999999998765 3333 57788999999999999999999999886553222
Q ss_pred -hhHHHHHHHHHhc--------CchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 000837 250 -SCYRVFINHLVKM--------KVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEP 320 (1262)
Q Consensus 250 -~~~~~l~~~l~~~--------~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 320 (1262)
.++..+..++... +++++|.+.|++++...+. +...+..+.... . ... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~~~-~---~~~------~~------- 165 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN----SEYAPDAKKRMD-Y---LRN------RL------- 165 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC----ChhHHHHHHHHH-H---HHH------HH-------
Confidence 2566666666654 7889999999999887643 222222111110 0 000 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCC----CcccHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 000837 321 SSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTP----DVLAGNRIIHTLCSIFGSKRADLFVQELEHS 383 (1262)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 383 (1262)
......+...|.+.|++.+|+..|++. ...| ....+..+..++.+.|++++|...++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011124556788899999999999988 3333 2457889999999999999999998888765
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=5.7e-05 Score=91.34 Aligned_cols=161 Identities=10% Similarity=0.020 Sum_probs=136.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHH
Q 000837 174 FRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYR 253 (1262)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 253 (1262)
|.+.++++..++.+..+.|++++|..+++.+.+.. |++..++..++..+.+.+++++|+..+++....++. +....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 77889999999999999999999999999998876 889999999999999999999999999999998766 788899
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 254 VFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYC 333 (1262)
Q Consensus 254 ~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 333 (1262)
.+..++.+.|++++|..+|++++..++. +..++..+..++...|+.++|...|++.++.- .+.+.-|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~---- 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE----FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL---- 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH----
Confidence 9999999999999999999999985532 47788899999999999999999999998753 34445555433
Q ss_pred hcCCHHHHHHHHHHc
Q 000837 334 EKKDFEDLLSFFTEM 348 (1262)
Q Consensus 334 ~~g~~~~A~~~~~~~ 348 (1262)
+++..-..+++++
T Consensus 230 --~~~~~~~~~~~~~ 242 (694)
T PRK15179 230 --VDLNADLAALRRL 242 (694)
T ss_pred --HHHHHHHHHHHHc
Confidence 3344444555555
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=6.8e-05 Score=85.58 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHH
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 257 (1262)
...--.++..+...|..+.|..++++. +.|...|..|...|+..+|-++..+-.+. +|++..|..+++
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 334457788888888888888888753 67888888888888888888888877773 568888888888
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKD 337 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 337 (1262)
..-...-+++|+++++..... +-..+.....+.++++++.+-++.-.+.. +.-..+|-....+..+.++
T Consensus 466 v~~d~s~yEkawElsn~~sar----------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR----------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH----------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 887777788888887764221 11222222334677777777777666554 4445666666666666777
Q ss_pred HHHHHHHHHHc-CCCC-CcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 338 FEDLLSFFTEM-KCTP-DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEI 415 (1262)
Q Consensus 338 ~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 415 (1262)
...|.+.|... ...| +...||.+-.+|.+.++-.+|...+.|..+.+ .-+...|-.-+....+.|.+++|++.+.++
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77777776666 3333 34557777777777777777777777766655 223333444455556677777777766665
Q ss_pred H
Q 000837 416 L 416 (1262)
Q Consensus 416 ~ 416 (1262)
.
T Consensus 614 l 614 (777)
T KOG1128|consen 614 L 614 (777)
T ss_pred H
Confidence 5
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.23 E-value=7.5e-05 Score=79.87 Aligned_cols=184 Identities=14% Similarity=0.090 Sum_probs=131.4
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---h
Q 000837 1014 SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD---SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-T---I 1086 (1262)
Q Consensus 1014 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~ 1086 (1262)
....+..+...+...|++++|...++++.... +.+ ..++..+..++...|++++|+..++++.+. .|+ . .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 44566677778889999999999999998752 222 256788899999999999999999999874 343 2 2
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 000837 1087 NYDNLIKRFCGY--------GRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVL 1158 (1262)
Q Consensus 1087 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 1158 (1262)
++..+..++... |++++|++.++++.+. .|+...... +...+..+.. ........+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~----------a~~~~~~~~~----~~~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPD----------AKKRMDYLRN----RLAGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHH----------HHHHHHHHHH----HHHHHHHHH
Confidence 566666667654 7788899999888875 444322111 1111111110 000122467
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1159 VHKLCQEGRTTEAERLLISMVQLGD-TP-TQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1159 ~~~~~~~g~~~~A~~l~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
+..+.+.|++++|+..++.+.+... .| .+..+..++.++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7789999999999999999997521 12 3678899999999999999999999988774
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.18 E-value=0.00064 Score=82.95 Aligned_cols=277 Identities=10% Similarity=0.088 Sum_probs=173.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 000837 910 ISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYG 989 (1262)
Q Consensus 910 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 989 (1262)
...+..|+..+...+++++|.++.+...+.. +.....|..+...+.+.++..++..+ .++..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3455566666667777777777776555442 11344444444466666665554433 22333
Q ss_pred hhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000837 990 FSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEA 1069 (1262)
Q Consensus 990 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 1069 (1262)
+....++.....++..|... .-+...+..+..+|-+.|+.++|..+++++++.. +.+..+.|.++..|... +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 33444444444444455542 2244567778888888888888888888888865 44588888888888888 88888
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHC-CC
Q 000837 1070 EHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMAR-DL 1148 (1262)
Q Consensus 1070 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~-~~ 1148 (1262)
++++.++.+. |...+++.++.++|.++... .|+... .-..+.+++... +.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d------------~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFD------------FFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Ccccch------------HHHHHHHHHHhhhcc
Confidence 8888888763 55667888888888888875 344322 222333333321 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCCChhhHHH
Q 000837 1149 KPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ-SGYSPDFSTHWS 1227 (1262)
Q Consensus 1149 ~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ 1227 (1262)
.--..++.-+...|...+++++++.+++.+++.. +.|..+...++..|. +.+.. -..++..++ .|+.-.....-.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~ 295 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKD 295 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHH
Confidence 2334566666677778889999999999999863 446777777777766 44444 233333322 456666566667
Q ss_pred HHHHhhcccccccc
Q 000837 1228 LISNLRNSNDKDNN 1241 (1262)
Q Consensus 1228 ~l~~l~~~~~~~~~ 1241 (1262)
+|++.-.-...+.+
T Consensus 296 ~i~~fek~i~f~~G 309 (906)
T PRK14720 296 CIADFEKNIVFDTG 309 (906)
T ss_pred HHHHHHHHeeecCC
Confidence 77777665555554
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.15 E-value=0.00015 Score=74.02 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHH
Q 000837 1063 RGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAE 1142 (1262)
Q Consensus 1063 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~ 1142 (1262)
.++.++++..+++.++.+ +.|...|..|...|...|++++|+..|++..+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----------------------------- 101 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ----------------------------- 101 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------
Confidence 445555555555555532 11355566666666666666666666655554
Q ss_pred HHHCCCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1143 MMARDLKP-SMNTWHVLVHKL-CQEGR--TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1143 ~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
+.| +...+..++.++ ...|+ .++|.++++++++.+ +.++..+..++..+...|++++|+..|+++++.
T Consensus 102 -----l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 102 -----LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred -----hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334 455666666653 45555 467777777777642 335666666777777777777777777777663
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.15 E-value=0.0005 Score=83.37 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 000837 1046 LVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYD 1124 (1262)
Q Consensus 1046 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1124 (1262)
+..+...+..|..+....|++++|+.+++...+ +.|+ ...+..++.++.+.+++++|+..+++++.. .|+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 455677788888888888888888888888887 5666 566777778888888888888888887775 46655544
Q ss_pred HHHcc----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 000837 1125 SIIST----CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYS 1191 (1262)
Q Consensus 1125 ~ll~~----~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~ 1191 (1262)
..... .|++++|.++|+++.. ..| ++.++..++.++-..|+.++|...|+++.+. ..|-...|.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~ 226 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLT 226 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHH
Confidence 44333 7777777777777775 334 4678888888888888888888888888875 344444444
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.15 E-value=0.00076 Score=82.47 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=140.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcH
Q 000837 944 NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPD-----EVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSL 1018 (1262)
Q Consensus 944 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 1018 (1262)
+...|-..|......++.++|.+++++.+.. +.+. ...|.++++.-...|.-+...++|+++.+. ......|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 5566777777788888888888888877654 3221 145666666666666667777888887773 2334556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHH
Q 000837 1019 RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD---TINYDNLIKRF 1095 (1262)
Q Consensus 1019 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~ 1095 (1262)
..|...|.+.+..++|.++++.|.++ +.-...+|...++.+.++++-++|..++.++++. -|. .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 77788888888888888888888876 4456778888888888888888888888888763 333 22333334445
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHCCCCCC
Q 000837 1096 CGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMARDLKPS 1151 (1262)
Q Consensus 1096 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~ 1151 (1262)
.+.|+.+.+..+|+.++.. ++--...|+.++.. .|+.+.+..+|++++..++.|.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 6778888888888887775 23344557777776 6777888888888888777773
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0011 Score=66.87 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 000837 1030 ELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRL 1101 (1262)
Q Consensus 1030 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 1101 (1262)
.+.+|.-+|++|.++ ..|++.+.+-.+.++...|++++|..++++++.+... ++.+...++-.-...|..
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 344555555555443 3445555555555555555555555555555543222 333444444333333333
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.07 E-value=9.7e-05 Score=75.38 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=75.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHH-HhcCc--hhH
Q 000837 191 VGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHL-VKMKV--THL 267 (1262)
Q Consensus 191 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l-~~~~~--~~~ 267 (1262)
.++.+++...+....+.. |++...|..|+..|...|++++|+..|++..+.++. +...+..+..++ ...|+ +++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 344455555555555554 556677777777777777777777777777666544 556666666653 45555 467
Q ss_pred HHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 268 AFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFG 317 (1262)
Q Consensus 268 A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 317 (1262)
|..++++.++.++. +..++..+...+...|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~dP~----~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN----EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777666643 45556666666666666666666666666544
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0015 Score=65.89 Aligned_cols=250 Identities=14% Similarity=0.104 Sum_probs=121.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 000837 812 IPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNL 891 (1262)
Q Consensus 812 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~ 891 (1262)
++-+.-.|.+..++..-....... .++..-.-+.++|...|....... ++.... .|....+..+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 444555566666666655543331 122222234455555555433222 222211 23333333333333334443
Q ss_pred HHHH-HHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 000837 892 RKVR-ELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDE 970 (1262)
Q Consensus 892 ~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 970 (1262)
+... ++.+.+.......+......-+..|++.+++++|++...... +......=...+.+..+.+-|...+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 333333333333333333333455666677777766665421 112222223445556666666666666
Q ss_pred HHHCCCCCCHhhHHHHHHHhhc----CCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 000837 971 LQENELLPDEVTYNFLIYGFSK----HKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGL 1046 (1262)
Q Consensus 971 m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 1046 (1262)
|.+- -+..|.+.|..++.+ .+++.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+..
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 6653 244566656555543 24566666677766653 456666666666666666777777777776666532
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 000837 1047 VHDSIVQNAIAEGLLSRG-KLQEAEHFLDQIVD 1078 (1262)
Q Consensus 1047 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 1078 (1262)
. ++.+...++-.-...| +.+-..+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 2 3444333333222333 33334445555544
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.05 E-value=0.0001 Score=70.94 Aligned_cols=100 Identities=10% Similarity=-0.075 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHH
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 257 (1262)
|..+...+..+...|++++|...+..+.... |.+..+|..+..++...|++++|+..|++..+.++. +...+..+..
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~ 100 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 3345566777788888888888888877665 557777888888888888888888888888776643 6777777888
Q ss_pred HHHhcCchhHHHHHHHHHHHcCC
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGN 280 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~ 280 (1262)
++...|++++|...|++.++..+
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888777664
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=3.9e-05 Score=78.75 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=88.7
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
.+++.+|+..|.+.++ +.| |+..|..-+.+|++.|.++.|.+=.+.++. +.|. ..+|.+|+.+|...|++++|+
T Consensus 94 ~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred hhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHH
Confidence 5677788888888776 777 667778888999999999999999999987 4565 789999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhccccccc
Q 000837 1208 ELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDN 1240 (1262)
Q Consensus 1208 ~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~ 1240 (1262)
+.|++.++ ++|++++++..|.-..+....-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999 89999999998887766554433
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.03 E-value=0.0014 Score=80.17 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1187 QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1187 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
......+++.+...|..++..+.+++++...-.....-.|.+-...+.
T Consensus 582 ~~l~~~~~~~L~~~g~~~~l~~~~~~~~~~~~~~~e~~iW~~k~~~~~ 629 (906)
T PRK14720 582 HKVNKYVFDSLYEEGKFDELNSLFKYVIKNYKEYPEAFIWVAKSILSY 629 (906)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhccCccchhhhhhhhccc
Confidence 555556778888888888888888888875333333335555555443
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00042 Score=70.00 Aligned_cols=159 Identities=11% Similarity=0.043 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHH
Q 000837 213 SNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHD 292 (1262)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 292 (1262)
...+ ..+-..|.-.|+-+....+..+.....+. +....+..+....+.|++..|...+.+.....+ +|...|+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p----~d~~~~~~ 139 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP----TDWEAWNL 139 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC----CChhhhhH
Confidence 3344 55555666666666666666654433222 334444466666666666666666666655443 35566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCCh
Q 000837 293 VVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGS 370 (1262)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~ 370 (1262)
+.-+|.+.|++++|..-|.+..+.- +-+...+|-+.-.|.-.|++++|..++.+. .-.-|...-..|..+....|++
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 6666666666666666666665542 334445555555555566666666666655 2223455555555555666666
Q ss_pred hHHHHHHH
Q 000837 371 KRADLFVQ 378 (1262)
Q Consensus 371 ~~A~~~~~ 378 (1262)
++|.++-.
T Consensus 219 ~~A~~i~~ 226 (257)
T COG5010 219 REAEDIAV 226 (257)
T ss_pred HHHHhhcc
Confidence 66655543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.0042 Score=68.57 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=71.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 000837 1091 LIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQE 1165 (1262)
Q Consensus 1091 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 1165 (1262)
....+...|.+++|+..++.++.. .|++..|..+... .|+.++|.+.++++.. ..|+ ...+..++.+|.+.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhc
Confidence 333444566666666666666654 5566555555444 5666666666666665 4554 44555666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1166 GRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1166 g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
|+..+|+++++..... .+.|+..|..|..+|...|+..+|...+.+...
T Consensus 388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6666666666666653 355566666666666666666555555555544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.0024 Score=70.36 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=89.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 000837 254 VFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPS-SLVFNEVAYGY 332 (1262)
Q Consensus 254 ~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~ 332 (1262)
.....+...++++.|+..+..++..-+. |++........+.+.++..+|.+.++++... .|+ ....-.+..+|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPD----NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 3334445566677777777776665532 4555555566666777777777777777665 233 45555666777
Q ss_pred HhcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 000837 333 CEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALV 410 (1262)
Q Consensus 333 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 410 (1262)
.+.|++.+|+..+... ..+.|...|..|..+|...|+..+|..-..|+. ...|++++|..
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~ 446 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAII 446 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHH
Confidence 7777777777777766 445566777777777777777777666555442 23566667766
Q ss_pred HHHHHHhC
Q 000837 411 FFSEILSR 418 (1262)
Q Consensus 411 ~~~~m~~~ 418 (1262)
.+....+.
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 66666544
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.00097 Score=67.49 Aligned_cols=163 Identities=14% Similarity=0.046 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFI 256 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 256 (1262)
.+++ ......+.-.|+-+.....+....... +.+..+...++....+.|++.+|+..|.+..... ++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 4555 666666777777666666655544333 4466777789999999999999999999998875 45899999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 000837 257 NHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKK 336 (1262)
Q Consensus 257 ~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 336 (1262)
-+|.+.|+++.|..-|.+.++..+. +....+.+.-.+.-.|+++.|+.++......+ .-|..+-.-+..+....|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~----~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN----EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC----CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcC
Confidence 9999999999999999999998764 67788999999999999999999999998775 447777778888899999
Q ss_pred CHHHHHHHHHHc
Q 000837 337 DFEDLLSFFTEM 348 (1262)
Q Consensus 337 ~~~~A~~~~~~~ 348 (1262)
++++|+.+-..-
T Consensus 217 ~~~~A~~i~~~e 228 (257)
T COG5010 217 DFREAEDIAVQE 228 (257)
T ss_pred ChHHHHhhcccc
Confidence 999999877654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0031 Score=63.14 Aligned_cols=184 Identities=15% Similarity=0.196 Sum_probs=111.2
Q ss_pred ChhHHHHHHHHHHH---cC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHH
Q 000837 1030 ELGKSLELSQEMRL---KG-LVHDS-IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDK 1103 (1262)
Q Consensus 1030 ~~~~A~~~~~~~~~---~g-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 1103 (1262)
+.++..+++.++.. .| ..++. ..|..++-+....|+.+.|...++++.++ . |. ..+-..-...+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhh
Confidence 34445555554443 22 33332 23344445555666777777777776654 2 33 2222222333455677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH---HcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1104 AVDLLNIMLKKGSTPNSSSYDSI---ISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1104 A~~~~~~~~~~~~~p~~~~~~~l---l~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
|+++++.+++.. +-|.+++..- +.+.|+.-+|++.+....+ .+..|.+.|..+...|...|+++.|.--+++++=
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777653 3344444322 2226776677776666665 2445788888888888888888888888888875
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCCC
Q 000837 1181 LGDTP-TQEMYSSVVNRYSLENN---LGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1181 ~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~ 1221 (1262)
..| ++-++..++..++-.|. ..-|.++|.+.++ +.|.
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~ 223 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNPK 223 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChH
Confidence 344 45566678887776664 4557788888887 4553
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00017 Score=69.26 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=74.8
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|.+.++++.. ..| ++..|..++..+.+.|++++|...+++..+.+ +.++..+..++..|...|++++|..
T Consensus 30 ~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 30 QGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred cccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555556555555554 234 67788899999999999999999999988763 5568888889999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHH
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~ 1230 (1262)
.+++.++ ..|++........
T Consensus 107 ~~~~al~--~~p~~~~~~~~~~ 126 (135)
T TIGR02552 107 ALDLAIE--ICGENPEYSELKE 126 (135)
T ss_pred HHHHHHH--hccccchHHHHHH
Confidence 9999999 5787776544443
No 138
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.80 E-value=0.092 Score=57.49 Aligned_cols=219 Identities=13% Similarity=0.133 Sum_probs=127.3
Q ss_pred ChhHHHHHHHHHHHCCCCC----ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHhc
Q 000837 995 DVSSSKYYIAAMVSKGFNP----SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQ-------NAIAEGLLSR 1063 (1262)
Q Consensus 995 ~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-------~~l~~~~~~~ 1063 (1262)
+.+++..+.+.+....+.+ -..++..++....+.++..+|.+.+.-+.-. .|+...- ..+.+..+.-
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~D 351 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCED 351 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcc
Confidence 5556666555555432222 1235666677777778888888777766542 3332211 2222333311
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHhHHHHH---HHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHcc-cCC--
Q 000837 1064 ----GKLQEAEHFLDQIVDKDLVPDTINYDNL---IKRFCGYGR-LDKAVDLLNIMLKKGSTPNSSSYDSIIST-CNK-- 1132 (1262)
Q Consensus 1064 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~g~-- 1132 (1262)
-+...=+.+++.....++... .....| +.-+-+.|. -++|+++++..++-. .-|...-+.+... ...
T Consensus 352 D~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 352 DESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYK 429 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 123334555666655443321 111122 233445555 788888888887741 2222222222222 222
Q ss_pred -------hhHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 1133 -------LDPAMDLHAEMMARDLKP----SMNTWHVLVHK--LCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSL 1199 (1262)
Q Consensus 1133 -------~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~ 1199 (1262)
+..-+++-+-+.+.|+.| +...-+.|.++ ++.+|++.++.-.-.-..+ +.|++.+|.-+|-.+..
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHH
Confidence 333333333344567877 56677888887 6788999999876666665 78999999999999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhh
Q 000837 1200 ENNLGKASELMQAMQQSGYSPDFST 1224 (1262)
Q Consensus 1200 ~g~~~~A~~~~~~~~~~~~~p~~~~ 1224 (1262)
..++++|..+++. +.|+..+
T Consensus 508 ~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 508 NKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred HhhHHHHHHHHHh-----CCCchhh
Confidence 9999999999886 4666554
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.78 E-value=0.00068 Score=65.03 Aligned_cols=110 Identities=12% Similarity=-0.021 Sum_probs=84.1
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 000837 164 FKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGR 243 (1262)
Q Consensus 164 f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (1262)
|+.+..++|. +..+...++..+...|++++|.+.+..+...+ |.++..+..+...|...|++++|...|++..+.
T Consensus 6 ~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 6 LKDLLGLDSE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHcCChh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444332 45677788888888888888888888887765 557788888888888888888888888888777
Q ss_pred CCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 244 GLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 244 ~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
++. +...+..+...+...|+++.|...|++.++..
T Consensus 81 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 DPD-DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 543 56677777888888888888888888887766
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0029 Score=63.42 Aligned_cols=183 Identities=15% Similarity=0.203 Sum_probs=136.8
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHcccCCh
Q 000837 1063 RGKLQEAEHFLDQIVD---KD-LVPDT-INYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS----YDSIISTCNKL 1133 (1262)
Q Consensus 1063 ~g~~~~A~~~~~~m~~---~~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~ll~~~g~~ 1133 (1262)
..+.++..+++.+++. .| ..|+. ..|..++-+....|+.+.|...++.+... .|.+.- ...++.+.|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 3567777777777763 24 55664 35666667778899999999999999886 244332 33334449999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 000837 1134 DPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQA 1212 (1262)
Q Consensus 1134 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1212 (1262)
++|+++|+.+++.. | |..++..-+.+.-..|+.-+|++.+....+. +..|...|..+...|...|++++|.=.++.
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999743 5 6677777777788889889999999999986 788999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhh-ccccccccccchhhhhhhh
Q 000837 1213 MQQSGYSPDFSTHWSLISNLR-NSNDKDNNRNSQGFLSRLL 1252 (1262)
Q Consensus 1213 ~~~~~~~p~~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~ 1252 (1262)
++- ..|-++.+..-+++++ .-+|..+-+-+..+..+.+
T Consensus 180 ~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 180 LLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999 6888777666666654 3444333333333444433
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.74 E-value=4.7e-05 Score=52.66 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=18.4
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC
Q 000837 356 AGNRIIHTLCSIFGSKRADLFVQELEHSGFRPD 388 (1262)
Q Consensus 356 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 388 (1262)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.70 E-value=5.3e-05 Score=52.39 Aligned_cols=33 Identities=48% Similarity=0.853 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 000837 426 TYNSLISGMFKEGMSKHAKEILDEMVNRGITPS 458 (1262)
Q Consensus 426 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 458 (1262)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666655
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.00095 Score=64.68 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=72.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-HH-HHHHHcc-----cCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH
Q 000837 1098 YGRLDKAVDLLNIMLKKGSTPNS-SS-YDSIIST-----CNKLDPAMDLHAEMMARDLKPS--MNTWHVLVHKLCQEGRT 1168 (1262)
Q Consensus 1098 ~g~~~~A~~~~~~~~~~~~~p~~-~~-~~~ll~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 1168 (1262)
.++...+.+.++.+.+.. |+. .. ...+..+ .|++++|.+.|+.+.+..-.|. ......++.++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 556666666666666541 222 11 1111111 5666666666666665331221 23456778889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 000837 1169 TEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAM 1213 (1262)
Q Consensus 1169 ~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 1213 (1262)
++|+..++.... ....+..+...+++|...|++++|+..|++.
T Consensus 102 d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999977443 2334667778999999999999999999875
No 144
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.66 E-value=0.13 Score=55.18 Aligned_cols=252 Identities=15% Similarity=0.207 Sum_probs=163.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChhH
Q 000837 957 SSGNIFHVKRVLDELQENELLPDE--VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPS-NRSLRSVISCLCEVGELGK 1033 (1262)
Q Consensus 957 ~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 1033 (1262)
-.|++++|.+-|+.|... |.. .-...|.-...+.|+.+.|.++-++.-.. .|. .......+...|..|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHH
Confidence 357777777777777762 211 11222333334667777787777776653 332 3455667788888888888
Q ss_pred HHHHHHHHHHc-CCCCCHH--HHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCChHHHHH
Q 000837 1034 SLELSQEMRLK-GLVHDSI--VQNAIAEGL---LSRGKLQEAEHFLDQIVDKDLVPDT-INYDNLIKRFCGYGRLDKAVD 1106 (1262)
Q Consensus 1034 A~~~~~~~~~~-g~~~~~~--~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 1106 (1262)
|+++++.-.+. -+.++.. .--.|+.+- .-.-+...|...-.+..+ +.||. ..-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 88888765543 2233321 111222111 112346666666666655 56663 233444578889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000837 1107 LLNIMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHAEMMA-RDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD 1183 (1262)
Q Consensus 1107 ~~~~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~ 1183 (1262)
+++.+.+. .|-.......+.. .|+. +++-+++..+ ..++| +......++.+-...|++..|..--+.... .
T Consensus 285 ilE~aWK~--ePHP~ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~ 358 (531)
T COG3898 285 ILETAWKA--EPHPDIALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E 358 (531)
T ss_pred HHHHHHhc--CCChHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h
Confidence 99999986 4555555555555 4542 2333333222 12566 567778888888999999998888887776 5
Q ss_pred CCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCC
Q 000837 1184 TPTQEMYSSVVNRYSLE-NNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1184 ~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
.|..+.|..+.++-... ||-+++...+-+.+...-+|.
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 88899999998887766 999999999999998765654
No 145
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.62 E-value=0.17 Score=55.53 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=76.6
Q ss_pred hhhhccCCCHHHHHHHHHHHhhcCCCCC--------hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 000837 534 GNGLYLDTDLDEYERKLSKIIEDSMIPN--------FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLC 605 (1262)
Q Consensus 534 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 605 (1262)
+-.+.+.+++.++..+|.++.+..-... -+.++.+|.. .+.+.-...+.++.+. .| ...|-.+..++.
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALV 88 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence 3455678889999999998877654432 3445555543 3444444455555442 22 223333433332
Q ss_pred -hCCCchHHHHHHHHHhhhh--cCCC---C---------hHHHHHHHHHHHccCChHHHHHHHHHHhhc----CCCCCHh
Q 000837 606 -ASRSHIKACTGLLEKMPKL--ANKL---D---------QESLNLLIQACCKKGLVRDGKKIFDGMLQR----GLTIENE 666 (1262)
Q Consensus 606 -~~~~~~~~a~~l~~~~~~~--~~~~---~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~ 666 (1262)
-..+++..|.+.+...... +..+ | -..-+..+..+...|++.++..+++++... ....+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 2333477887777766544 2211 1 112234455666777777777777666543 3335667
Q ss_pred hHHHHHHHHHh
Q 000837 667 SYTTLLMSLCK 677 (1262)
Q Consensus 667 ~~~~li~~~~~ 677 (1262)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 77765555543
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.57 E-value=0.0001 Score=50.47 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 000837 426 TYNSLISGMFKEGMSKHAKEILDEMVNRGITP 457 (1262)
Q Consensus 426 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 457 (1262)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 147
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.56 E-value=0.17 Score=54.21 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=144.5
Q ss_pred cCChhhHHHHHHHHHhCCCCCCcch----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhH
Q 000837 923 EGGVPWALNLKELMLGQNKSHNLII----FNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSS 998 (1262)
Q Consensus 923 ~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 998 (1262)
.|+++.|.+-|+.|... +.+ ...|.-.-.+.|..+.|..+-++.-+.- ..-...+...+...+..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 46666666666666542 222 1122222234566666666665554431 1123556666777777777777
Q ss_pred HHHHHHHHHH-CCCCCChhcH--HHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 000837 999 SKYYIAAMVS-KGFNPSNRSL--RSVISCLC---EVGELGKSLELSQEMRLKGLVHDSI-VQNAIAEGLLSRGKLQEAEH 1071 (1262)
Q Consensus 999 A~~~~~~m~~-~g~~p~~~~~--~~li~~~~---~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~ 1071 (1262)
|+++.+.-.+ +-+.++..-- ..|+.+-. -..+...|...-.+..+ +.||.. .--.-..+|.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 7777776655 2234443211 12222111 12245555555555544 455522 23344567889999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHC
Q 000837 1072 FLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDSIIST----CNKLDPAMDLHAEMMAR 1146 (1262)
Q Consensus 1072 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~ 1146 (1262)
+++.+.+....|++. +...+.+.|+. ++.-+++..+. .++|+..--...+.. .|++..|..--+....
T Consensus 285 ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 285 ILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred HHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 999999876666532 12234455554 44444444332 356665543333332 7888888877777765
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC
Q 000837 1147 DLKPSMNTWHVLVHKLCQE-GRTTEAERLLISMVQLGDTP 1185 (1262)
Q Consensus 1147 ~~~p~~~~~~~l~~~~~~~-g~~~~A~~l~~~~~~~~~~p 1185 (1262)
..|....|-.|.+.-... |+-.++..++.+.++..-.|
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 788888898888886554 99999999999998754444
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.53 E-value=0.0027 Score=71.09 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChh
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLD 1134 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~ 1134 (1262)
.|+..+...++++.|+.+|+++.+.. |+ ....++..+...++..+|++++++.++. .|.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~--------------- 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQ--------------- 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCC---------------
Confidence 33444444455555555555555532 33 2233445555555555555555555543 121
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1135 PAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1135 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
+...+..-+..|...++++.|+++.+++++. .+.+..+|..|+.+|...|++++|+..++
T Consensus 233 ----------------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 233 ----------------DSELLNLQAEFLLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred ----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 3344444444455555555555555555542 12234455555555555555555554444
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0009 Score=75.56 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=82.5
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|++.|++++. +.| +...|..++.+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+.
T Consensus 15 ~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 15 DDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5667777777777775 455 56788888899999999999999999998852 4467888889999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhccc
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLRNSN 1236 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~~l~~~~ 1236 (1262)
.++++++ +.|++......+..+....
T Consensus 92 ~~~~al~--l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 92 ALEKGAS--LAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence 9999988 7888888887777775544
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.52 E-value=0.0051 Score=58.14 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=74.8
Q ss_pred HHHHHcccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 000837 1123 YDSIISTCNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLEN 1201 (1262)
Q Consensus 1123 ~~~ll~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g 1201 (1262)
+...+...|++++|.++|+-+.. +.| +..-|..|+-++...|++++|+..+..+.... +.++..+..++..+...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33344447888888888888876 667 67788899999999999999999999999864 456888888999999999
Q ss_pred CHhHHHHHHHHHHHc
Q 000837 1202 NLGKASELMQAMQQS 1216 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~~ 1216 (1262)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988874
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.52 E-value=0.00014 Score=49.78 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=15.5
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC
Q 000837 356 AGNRIIHTLCSIFGSKRADLFVQELEHSGFRP 387 (1262)
Q Consensus 356 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 387 (1262)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00021 Score=61.49 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=62.0
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDL-KPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|+.+++++.+..- .|+...+..++.+|.+.|++++|..++++ .+.+ ..+......++..+...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3678889999988887322 12456677789999999999999999998 4322 2344666677999999999999999
Q ss_pred HHHHH
Q 000837 1209 LMQAM 1213 (1262)
Q Consensus 1209 ~~~~~ 1213 (1262)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.43 E-value=0.0037 Score=60.54 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=71.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC---hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPS---NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD--SIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~ 1066 (1262)
..++...+...++.+.+.. ..+ ....-.+...+...|++++|...|+.+.+....|. ......|...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3666667766777777642 111 11222344566677777777777777777642222 23445567777777778
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 000837 1067 QEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIM 1111 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 1111 (1262)
++|+..++...... .....+..+..+|...|++++|...|+..
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777776643322 23445666677777788888877777653
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0057 Score=63.35 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=72.2
Q ss_pred HhhcCCChhHHHHHHHHHHHCCCCCCh-hcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 000837 989 GFSKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 989 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~ 1066 (1262)
-+.+.+++.+|+..|.++++ +.|+. +.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 35577888888888888888 46644 44455677888888888888888888774 444 77888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHH
Q 000837 1067 QEAEHFLDQIVDKDLVPDTINYD 1089 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~~~~p~~~~~~ 1089 (1262)
++|++.|++.++ +.|+-.+|.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHH
Confidence 888888888887 677655443
No 155
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.35 E-value=0.00053 Score=56.23 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=55.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 000837 1163 CQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1163 ~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l 1232 (1262)
.+.|++++|+++++++.+. .+.+...+..++..|...|++++|.++++++.. ..|+++.++.+++.|
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHHhcC
Confidence 5678999999999999875 244788888899999999999999999999988 588888788877654
No 156
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.33 E-value=0.00065 Score=71.99 Aligned_cols=283 Identities=14% Similarity=0.060 Sum_probs=153.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC---CCHhhHHHHHHHhhcCCChhHHHHHHHHHH--H--CCCC-CChhcHHHHHHHHH
Q 000837 955 LMSSGNIFHVKRVLDELQENELL---PDEVTYNFLIYGFSKHKDVSSSKYYIAAMV--S--KGFN-PSNRSLRSVISCLC 1026 (1262)
Q Consensus 955 ~~~~g~~~~A~~~~~~m~~~g~~---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~-p~~~~~~~li~~~~ 1026 (1262)
+++.|+....+.+|+..++.|.. .=+..|..|.++|...+|+++|+++...=+ . .|-+ -...+...|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 45555555555555555555421 122445556666666666666665543211 0 0100 11222233444455
Q ss_pred hcCChhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHh---
Q 000837 1027 EVGELGKSLELSQEMR----LKGLV-HDSIVQNAIAEGLLSRGK--------------------LQEAEHFLDQIVD--- 1078 (1262)
Q Consensus 1027 ~~g~~~~A~~~~~~~~----~~g~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~--- 1078 (1262)
-.|.+++|+.....-. +.|-. .....+..|.+.|...|+ ++.|.++|.+-++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665544322 22211 123445556666655542 2334444433222
Q ss_pred -CCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHH-HHHHHHcc---cCChhHHHHHHHHHHHC--
Q 000837 1079 -KDLV-PDTINYDNLIKRFCGYGRLDKAVDLLNIMLK----KGSTPNSS-SYDSIIST---CNKLDPAMDLHAEMMAR-- 1146 (1262)
Q Consensus 1079 -~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~-~~~~ll~~---~g~~~~A~~~~~~~~~~-- 1146 (1262)
.|-. .--..|..|...|.-.|+++.|+...+.=+. .|-..... .+.-+-.+ .|+++.|.+.|+.....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 1100 0124567777777778899998877654332 23222111 12222222 78889999888876542
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 000837 1147 --DLK-PSMNTWHVLVHKLCQEGRTTEAERLLISMVQ----LG-DTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGY 1218 (1262)
Q Consensus 1147 --~~~-p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 1218 (1262)
|-+ ......+.|+..|.-..+++.|+..+++-+. .+ ..-..-.|.+|+.++...|..++|..+.+.-++...
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 211 1455677888999988999999998887653 11 122355667899999999999999988887766533
Q ss_pred CCC----hhhHHHHHHHhhcccc
Q 000837 1219 SPD----FSTHWSLISNLRNSND 1237 (1262)
Q Consensus 1219 ~p~----~~~~~~~l~~l~~~~~ 1237 (1262)
+.. ..|....|.++....|
T Consensus 347 ev~D~sgelTar~Nlsdl~~~lG 369 (639)
T KOG1130|consen 347 EVNDTSGELTARDNLSDLILELG 369 (639)
T ss_pred HhCCcchhhhhhhhhHHHHHHhC
Confidence 332 3334445555544333
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.31 E-value=0.0068 Score=68.00 Aligned_cols=126 Identities=15% Similarity=0.209 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHH
Q 000837 214 NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDV 293 (1262)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l 293 (1262)
......|+..+...++++.|+.+|+++.+.. |. ....++..+...++-.+|.+++++.+...+. +......-
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~----d~~LL~~Q 240 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ----DSELLNLQ 240 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----CHHHHHHH
Confidence 3555577777777888888998888888775 33 3445677777778888888888888866543 44455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 000837 294 VRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM 348 (1262)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 348 (1262)
...|.+.++++.|+.+.+++.+.. |.+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666778888888888888887763 445568888888888888888888888877
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.039 Score=60.39 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhH-
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP-----TQ-EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTH- 1225 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~- 1225 (1262)
..+..++..+.+.|++++|.++|++........ +. ..+...+-.+...||...|...+++... ..|.+.+.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~ 233 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcH
Confidence 456677777888888888888888877632211 11 2233344456667888888888888766 34433332
Q ss_pred -HHHHHHhhccccc
Q 000837 1226 -WSLISNLRNSNDK 1238 (1262)
Q Consensus 1226 -~~~l~~l~~~~~~ 1238 (1262)
..++.+|-.+-+.
T Consensus 234 E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 234 EYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 4455555554433
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.30 E-value=0.00029 Score=46.93 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=15.1
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 000837 356 AGNRIIHTLCSIFGSKRADLFVQELEHSG 384 (1262)
Q Consensus 356 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 384 (1262)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.00087 Score=54.30 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1157 VLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1157 ~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
.++..+.+.|++++|+..|+++++.. +-++..+..++.++...|++++|..+++++++ ..|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCC
Confidence 46778999999999999999999863 44689999999999999999999999999988 477653
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.29 E-value=0.0049 Score=57.39 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCcc--ChhhHHHH
Q 000837 179 RSCEVMALMLIRVGMLKEVELLLLAMEREGIL-LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVP--FLSCYRVF 255 (1262)
Q Consensus 179 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l 255 (1262)
+++...+..+.+.|++++|...+..+.+.... +..+.++..++.++.+.|++++|+..|+.+....+.. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 44555666666666666666666666654311 1113445556666666666666666666665543221 23445555
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcC
Q 000837 256 INHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 256 ~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
..++.+.+++++|...|+++++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 556666666666666666665554
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.26 E-value=0.0032 Score=54.80 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCccCHHHH
Q 000837 392 FGILIGWTCREGNLRSALVFFSEILSRGL-NPDVHTYNSLISGMFKEG--------MSKHAKEILDEMVNRGITPSLSTY 462 (1262)
Q Consensus 392 y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~~~ 462 (1262)
-...|..|...+++.....+|+.+++.|+ .|++.+|+.++...++.. ++-+...+++.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666666777777777777777777 777777777777766542 345567778888888888888888
Q ss_pred HHHHHHHHH
Q 000837 463 RILLAGYCK 471 (1262)
Q Consensus 463 ~~li~~~~~ 471 (1262)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.26 E-value=0.0058 Score=56.91 Aligned_cols=109 Identities=10% Similarity=-0.051 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCc--cChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHH
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLV--PFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHD 292 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 292 (1262)
.++..++..+.+.|++++|...|.++.+..+. ....++..+..++.+.|+++.|...|+++....+.. .....++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-PKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-CcccHHHHH
Confidence 56778888999999999999999999875432 124567778899999999999999999998866430 012345777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 000837 293 VVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVF 325 (1262)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 325 (1262)
+..++.+.|+.++|...++++++.. +.+..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY-PGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC-cCChhHH
Confidence 7778888888888888888888764 3344433
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.24 E-value=0.00035 Score=46.55 Aligned_cols=29 Identities=38% Similarity=0.670 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000837 391 TFGILIGWTCREGNLRSALVFFSEILSRG 419 (1262)
Q Consensus 391 ty~~li~~~~~~g~~~~A~~~~~~m~~~g 419 (1262)
||+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44455555555555555555555554443
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.23 E-value=0.0025 Score=71.57 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=91.2
Q ss_pred CcccHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 000837 353 DVLAGNRIIHTLCSIFGSKRADLFVQELEHS--GFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSL 430 (1262)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l 430 (1262)
.....-.+++......+++.+..++.+.... ....-..|..++|+.|.+.|..++++.++..=...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344555566666666666777777766654 22223346678999999999999999999888888999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc
Q 000837 431 ISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKA 472 (1262)
Q Consensus 431 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 472 (1262)
|+.+.+.|++..|.+++.+|...+...+..|+..-+.++.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888777777777766666554
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.0096 Score=70.19 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 000837 1046 LVHDSIVQNAIAEGLLSR--G---KLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPN 1119 (1262)
Q Consensus 1046 ~~~~~~~~~~l~~~~~~~--g---~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 1119 (1262)
.+.+...|...+.+.... + +.+.|..+|+++++ ..|+ ...|..+..+|.....+ .|.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~---------------~~~ 395 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQ---------------QPL 395 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhc---------------CCc
Confidence 345567777666654332 2 26677777777776 3555 44444443333221111 110
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1120 SSSYDSIISTCNKLDPAMDLHAEMMARD-LKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYS 1198 (1262)
Q Consensus 1120 ~~~~~~ll~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~ 1198 (1262)
. ..++..+.+..++..... ...++..+..++-.....|++++|...++++++. .|+...|..++..+.
T Consensus 396 ~---------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~ 464 (517)
T PRK10153 396 D---------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYE 464 (517)
T ss_pred c---------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 0 011233444444433321 2225577888877777889999999999999985 578888999999999
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 000837 1199 LENNLGKASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1199 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l 1232 (1262)
..|+.++|.+.++++.+ +.|.++++ .+..|+
T Consensus 465 ~~G~~~eA~~~~~~A~~--L~P~~pt~-~~~~~~ 495 (517)
T PRK10153 465 LKGDNRLAADAYSTAFN--LRPGENTL-YWIENL 495 (517)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCCchH-HHHHhc
Confidence 99999999999999988 78998874 444444
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.20 E-value=0.0036 Score=55.30 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLV 260 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~ 260 (1262)
+..++..+...|++++|...+..+.+.. +.++.++..+...|...|++++|+..|+...+..+. +..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 4455566666666666666666665543 334455566666666666666666666666554432 3345555556666
Q ss_pred hcCchhHHHHHHHHHHH
Q 000837 261 KMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 261 ~~~~~~~A~~~~~~m~~ 277 (1262)
..|+++.|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666655544
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.067 Score=57.82 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=37.1
Q ss_pred hcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChH
Q 000837 1027 EVGELGKSLELSQEMRLK---GLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLD 1102 (1262)
Q Consensus 1027 ~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 1102 (1262)
+.|++.+|.+.+.+.+.. ...|+...|........+.|+.++|+.--+..++ +.|. +..|..-..++...++|+
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444432 1122333444444444455555555555554444 2222 222333334444455555
Q ss_pred HHHHHHHHHHh
Q 000837 1103 KAVDLLNIMLK 1113 (1262)
Q Consensus 1103 ~A~~~~~~~~~ 1113 (1262)
+|++-+++..+
T Consensus 339 ~AV~d~~~a~q 349 (486)
T KOG0550|consen 339 EAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHh
Confidence 55555555444
No 169
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.36 Score=55.55 Aligned_cols=106 Identities=8% Similarity=0.011 Sum_probs=63.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHH
Q 000837 562 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACC 641 (1262)
Q Consensus 562 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 641 (1262)
++.+...+.....+++|.+.|..-... ...+.++..... +++-+.+.+.+.+ +......+.+++.
T Consensus 799 ~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~-f~~LE~la~~Lpe-----~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 799 FRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL-FGELEVLARTLPE-----DSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh-hhhHHHHHHhcCc-----ccchHHHHHHHHH
Confidence 556666667777777777776554210 123334433333 5555555554433 6666777888888
Q ss_pred ccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 000837 642 KKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIA 691 (1262)
Q Consensus 642 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 691 (1262)
..|.-++|.+.|-+.-. + .+.+..|...+++.+|.++-+..
T Consensus 864 svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhchHHHHHHHHHhccC---c------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888887744321 1 13455666677777777766543
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.19 E-value=0.0012 Score=54.34 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLEN-NLGKASELMQAMQQ 1215 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 1215 (1262)
++..|..++..+...|++++|+..|+++++.. +.++.+|..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999963 446889999999999999 79999999999988
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.17 E-value=0.0032 Score=54.79 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCC-ccChhhHHHHHHHHHhcCc--------hhHHHHHHHHHHHcCCCCCCCCcc
Q 000837 218 SNLIQGYVGVGDVERAVLVFDQMRGRGL-VPFLSCYRVFINHLVKMKV--------THLAFRVCVDMVVMGNNLTDLEKD 288 (1262)
Q Consensus 218 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~l~~~~~--------~~~A~~~~~~m~~~g~~~~~~~~~ 288 (1262)
...|..+...+++...-.+|+.+++.|+ .|++.+||.++.+..++.- .-.++.+|++|+..+++ |+..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK---P~~e 105 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK---PNDE 105 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC---CcHH
Confidence 4556666777999999999999999998 8999999999998877542 23445555555555555 5555
Q ss_pred hHHHHHHHHH
Q 000837 289 SFHDVVRLLC 298 (1262)
Q Consensus 289 ~~~~l~~~~~ 298 (1262)
+|+.++..+.
T Consensus 106 tYnivl~~Ll 115 (120)
T PF08579_consen 106 TYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.17 E-value=0.011 Score=59.21 Aligned_cols=67 Identities=6% Similarity=-0.112 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccC--hhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 213 SNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF--LSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
....+..++..|...|++++|+..|++..+.+..+. ...|..+...+.+.|++++|...|.+.++..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345566777777777777777777777765443322 3466666667777777777777777666654
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.15 E-value=0.016 Score=63.32 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=50.4
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHCCCC-----CCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHH
Q 000837 358 NRIIHTLCSIFGSKRADLFVQELEHSGFR-----PDEI-TFGILIGWTCREGNLRSALVFFSEILSR--GLNPD--VHTY 427 (1262)
Q Consensus 358 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-ty~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~y 427 (1262)
..+...+.+.|++++|.++|++....... .+.. .|-..+-.+...|++..|.+.+++.... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 34566677777777777777776654221 1222 2333344555678888888888887755 33322 2344
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHh
Q 000837 428 NSLISGMFKEGM---SKHAKEILDEMVN 452 (1262)
Q Consensus 428 ~~li~~~~~~g~---~~~A~~l~~~m~~ 452 (1262)
..||.++- .|+ +++|..-|+.+..
T Consensus 239 ~~l~~A~~-~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 239 EDLLEAYE-EGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHH-TT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHcccCc
Confidence 55555553 333 4555555555443
No 174
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.14 E-value=0.005 Score=69.25 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=101.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCC-----CcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH
Q 000837 316 FGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTP-----DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEI 390 (1262)
Q Consensus 316 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 390 (1262)
.+.+-+......+++......+++++..++-+....| ...|..++|+.|.+.|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445677777788888888888999999888883333 24566799999999999999999999988899999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 000837 391 TFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKE 437 (1262)
Q Consensus 391 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 437 (1262)
||+.||+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887666777777777776654
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.06 E-value=0.005 Score=61.53 Aligned_cols=94 Identities=4% Similarity=-0.111 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCcc--ChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHH
Q 000837 214 NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVP--FLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFH 291 (1262)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 291 (1262)
...+..++..+...|++++|+..|++.......| ...+|..+...+...|++++|+..|++.++..+. ...++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~----~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF----LPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----cHHHHH
Confidence 4556677777788888888888888876653332 2347777888888888888888888888766432 234455
Q ss_pred HHHHHHH-------hcCCHHHHHHHHH
Q 000837 292 DVVRLLC-------RDRKIQESRNLVR 311 (1262)
Q Consensus 292 ~l~~~~~-------~~g~~~~a~~~~~ 311 (1262)
.+...+. ..|++++|...++
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555554 4455554443333
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.06 E-value=0.07 Score=56.45 Aligned_cols=80 Identities=16% Similarity=0.055 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIF---SNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYR 253 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 253 (1262)
++......+..+.+.|++++|...|+.+.... |.++.+- ..++.+|.+.+++++|+..|++..+..+.-.-..|-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 55666677777888889999999988888765 4444443 577888888899999998888887765543333343
Q ss_pred HHHHH
Q 000837 254 VFINH 258 (1262)
Q Consensus 254 ~l~~~ 258 (1262)
..+.+
T Consensus 109 ~Y~~g 113 (243)
T PRK10866 109 LYMRG 113 (243)
T ss_pred HHHHH
Confidence 33433
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.05 E-value=0.01 Score=56.08 Aligned_cols=99 Identities=9% Similarity=-0.025 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFI 256 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 256 (1262)
..+....++..|...|++++|..+|+-+.... |.+..-|..|.-.+-..|++++|+..|......++. ++..+-.+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 45667777888888899999988888887765 556777888888888888899999888888877754 777788888
Q ss_pred HHHHhcCchhHHHHHHHHHHHc
Q 000837 257 NHLVKMKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 257 ~~l~~~~~~~~A~~~~~~m~~~ 278 (1262)
.++.+.|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888877664
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.02 E-value=0.0071 Score=65.77 Aligned_cols=137 Identities=8% Similarity=0.071 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHcc--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1087 NYDNLIKRFCGYGRLDKAVDLLNIMLKKG-STPNSSSYDSIIST--CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLC 1163 (1262)
Q Consensus 1087 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 1163 (1262)
+|..+++...+.+..+.|..+|.+..+.+ .........+.+.. .++.+.|.++|+..++. ...+...|..++.-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 45566666666666666666666666432 22333333334433 34444477777777652 4446777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHH
Q 000837 1164 QEGRTTEAERLLISMVQLGDTPT---QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWS 1227 (1262)
Q Consensus 1164 ~~g~~~~A~~l~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 1227 (1262)
..|+.+.|..+|++.+.. +.++ ..+|..++.--...|+.+...++.+++.+ +.|+......
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~ 145 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLEL 145 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHH
Confidence 888888888888888864 3332 25888888888888888888888888888 4555443443
No 179
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.07 Score=58.86 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHH----HHHHHCCC---CCCHHHHHHHHHHHHhcC
Q 000837 1133 LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEA----ERLL----ISMVQLGD---TPTQEMYSSVVNRYSLEN 1201 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A----~~l~----~~~~~~~~---~p~~~~~~~l~~~~~~~g 1201 (1262)
.++|++.|.+..+ +.|+...=.+++..+...|...+. .++- ....+.|. ..+-+.+-+++.+..-.|
T Consensus 242 ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~ 319 (374)
T PF13281_consen 242 LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG 319 (374)
T ss_pred HHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC
Confidence 6778888887775 456544444444455555532222 2222 11222332 234566668899999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 000837 1202 NLGKASELMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~ 1233 (1262)
++++|.+.+++|... +|..+..-+.+.++.
T Consensus 320 d~~ka~~a~e~~~~l--~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKL--KPPAWELESTLENIK 349 (374)
T ss_pred CHHHHHHHHHHHhhc--CCcchhHHHHHHHHH
Confidence 999999999999984 565554555555543
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.98 E-value=0.14 Score=54.22 Aligned_cols=175 Identities=11% Similarity=0.095 Sum_probs=107.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHH
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLVHDSIV---QNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD--TINYDNLIKRFC 1096 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~ 1096 (1262)
...+.+.|++++|++.|+++...-.. +... .-.++.++.+.+++++|...+++.++. .|+ ..-+...+.+.+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 33455677888888888887775221 1222 245667777888888888888888774 333 122222222222
Q ss_pred --hc---------------CC---hHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 000837 1097 --GY---------------GR---LDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWH 1156 (1262)
Q Consensus 1097 --~~---------------g~---~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1156 (1262)
.. .+ ..+|++.|+++++. -|+.. -..+|...+..+.+. -...-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~----------ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ----------YTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh----------hHHHHHHHHHHHHHH----HHHHHH
Confidence 11 12 23566666676664 45542 233444444443320 111223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1157 VLVHKLCQEGRTTEAERLLISMVQL--GDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1157 ~l~~~~~~~g~~~~A~~l~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
.++.-|.+.|.+.-|..-++.+++. +.+........+..+|...|..++|.++.+.+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 6677799999999999999999974 1122366777888999999999999998877654
No 181
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.98 E-value=0.011 Score=66.72 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=62.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCc
Q 000837 185 ALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKV 264 (1262)
Q Consensus 185 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~ 264 (1262)
+..+...|++++|..++.++++.. |.++..|..+..+|...|++++|+..++++.+.++. +..+|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 445556677777777777776655 556667777777777777777777777777666543 55666667777777777
Q ss_pred hhHHHHHHHHHHHcC
Q 000837 265 THLAFRVCVDMVVMG 279 (1262)
Q Consensus 265 ~~~A~~~~~~m~~~g 279 (1262)
+++|...|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777776655
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.92 E-value=0.11 Score=49.72 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRL 1101 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 1101 (1262)
..+..+.=+++...+-..+-.+ .-|+...-..|.+++...|++.+|...|++...--.--|....-.+.++....++.
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3334444444444333332222 34566666667777777777777777777776532233466666777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1102 DKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1102 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
..|...++++-+.+ |+ +-.|+ ..-.+++.|...|+..+|+..|+.+.+
T Consensus 141 A~a~~tLe~l~e~~--pa---------------------------~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~- 188 (251)
T COG4700 141 AAAQQTLEDLMEYN--PA---------------------------FRSPD--GHLLFARTLAAQGKYADAESAFEVAIS- 188 (251)
T ss_pred HHHHHHHHHHhhcC--Cc---------------------------cCCCC--chHHHHHHHHhcCCchhHHHHHHHHHH-
Confidence 77777777766642 22 12222 334455556666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1182 GDTPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1182 ~~~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
..|++..-..+...+.++|+.++|.
T Consensus 189 -~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 189 -YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred -hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 4555544444555555666554444
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.36 Score=52.47 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=37.1
Q ss_pred CChHHHHHHH-HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH--hcCCHhhHHHHHHHHHhcC
Q 000837 628 LDQESLNLLI-QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLC--KKGFIKDLHAFWDIAQNRK 695 (1262)
Q Consensus 628 ~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~ 695 (1262)
|...+|-.+- ..+...|++++|.+.--..+..... ..+..++++.| -.++.+.|...|++.+..+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 3444444443 3455677778877776666654322 23333444433 4667777777777776654
No 184
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.88 E-value=0.01 Score=52.29 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHH
Q 000837 217 FSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRL 296 (1262)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~ 296 (1262)
+..++..+...|++++|+..|+++.+..+. +...+..+...+...+++++|...|++.....+. +..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD----NAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----chhHHHHHHHH
Confidence 456777778888888888888888776433 3466777777888888888888888887776543 33456666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 000837 297 LCRDRKIQESRNLVRKAMA 315 (1262)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~ 315 (1262)
+...|+.++|...+....+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 78 YYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHhHHHHHHHHHHHHc
Confidence 6667777777776666654
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.84 E-value=0.02 Score=56.76 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=61.7
Q ss_pred CCcchHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcccHH
Q 000837 285 LEKDSFHDVVRLLCR-----DRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVLAGN 358 (1262)
Q Consensus 285 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 358 (1262)
.+..+|..++..+.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |++- -..+|+.+ ...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hy------- 115 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHY------- 115 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccC-------
Confidence 345566666666653 46667777778888888888888888888877643 3221 22222222 000
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 000837 359 RIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREG 403 (1262)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 403 (1262)
-.+.+-|++++++|+..|+-||..|+..|++.+.+.+
T Consensus 116 --------p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 116 --------PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1223456667777777777777777777777665443
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.77 E-value=0.024 Score=56.27 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=56.4
Q ss_pred CCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 000837 387 PDEITFGILIGWTCRE-----GNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKE----------------GMSKHAKE 445 (1262)
Q Consensus 387 p~~~ty~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~----------------g~~~~A~~ 445 (1262)
.|..+|..+|..|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444555555554432 34444444455555555555555555555543321 24577899
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCC
Q 000837 446 ILDEMVNRGITPSLSTYRILLAGYCKARQ 474 (1262)
Q Consensus 446 l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 474 (1262)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999966654
No 187
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.77 E-value=2.4 Score=52.27 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=99.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHhHH
Q 000837 1025 LCEVGELGKSLELSQEMRLKGL-VHD-------SIVQNAIAEGLLSRGKLQEAEHFLD--------QIVDKDLVPDTINY 1088 (1262)
Q Consensus 1025 ~~~~g~~~~A~~~~~~~~~~g~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~ 1088 (1262)
.+-.+++..|...++.+.+.-- .|+ +.++...+-.+-..|+.+.|+..|. .....+..++...+
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 3456788888888888876311 111 3333333344455688999999997 44444444444433
Q ss_pred HHH--HHHHHhcCCh--HH--HHHHHHHHHhC-CCCCC--HHHHHHHHcc------cCChhHHHHHHHHHHHC---CCCC
Q 000837 1089 DNL--IKRFCGYGRL--DK--AVDLLNIMLKK-GSTPN--SSSYDSIIST------CNKLDPAMDLHAEMMAR---DLKP 1150 (1262)
Q Consensus 1089 ~~l--~~~~~~~g~~--~~--A~~~~~~~~~~-~~~p~--~~~~~~ll~~------~g~~~~A~~~~~~~~~~---~~~p 1150 (1262)
..| +..+...+.. ++ +-++++.+... ...|+ ..+...++.. .-...++...+.+..+. .+..
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 332 2223322322 22 55666554442 22332 2233333222 22233555544443321 1111
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHH-----HHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1151 ---SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD-TP--TQEMY-----SSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1151 ---~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~-~p--~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
-..+++.+...+. .|+..+..+......+... .| ....| ..+.+.|...|+.++|....++...
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1234555555555 7888887766665543211 22 34444 2455568888999999998887654
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.77 E-value=0.035 Score=65.56 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=88.5
Q ss_pred CCCCChhcHHHHHHHHHhc--C---ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 000837 1010 GFNPSNRSLRSVISCLCEV--G---ELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP 1083 (1262)
Q Consensus 1010 g~~p~~~~~~~li~~~~~~--g---~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 1083 (1262)
+...+...|...+.+.... + ..+.|..+|++.++. .|+ ...|..+..++..... ..|
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~---------------~~~ 394 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHS---------------QQP 394 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHh---------------cCC
Confidence 4456778888888865433 2 377999999999985 566 4455554443322111 111
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHH--Hcc-cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 1084 DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKG-STPNSSSYDSI--IST-CNKLDPAMDLHAEMMARDLKPSMNTWHVLV 1159 (1262)
Q Consensus 1084 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l--l~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 1159 (1262)
.. ..+...+.+...+..... ...+...|..+ ... .|++++|...++++.. +.|+...|..++
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG 460 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLG 460 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHH
Confidence 00 012223333333322221 11222222222 222 6778888888888876 668888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 000837 1160 HKLCQEGRTTEAERLLISMVQLGDTPTQEMY 1190 (1262)
Q Consensus 1160 ~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~ 1190 (1262)
..+...|+.++|...++++... .|...+|
T Consensus 461 ~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 461 KVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 9999999999999999999884 4543343
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.77 E-value=0.14 Score=49.04 Aligned_cols=132 Identities=13% Similarity=0.228 Sum_probs=98.4
Q ss_pred CCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhH
Q 000837 1011 FNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD---TIN 1087 (1262)
Q Consensus 1011 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~ 1087 (1262)
..|+...-..|..++.+.|+..+|...|++...--+-.|....-.+.++....+++.+|...++++.+.. |+ +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 4677777778888999999999999999998876566678888889999999999999999999988742 32 335
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHcccCChhHHHHHHHHHH
Q 000837 1088 YDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSS-SYDSIISTCNKLDPAMDLHAEMM 1144 (1262)
Q Consensus 1088 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~g~~~~A~~~~~~~~ 1144 (1262)
.-.+...|...|++.+|...|+..+..-..|... .|..++...|+.++|..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5566788888999999999999888852223322 34445555776666655544444
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.76 E-value=0.0072 Score=50.28 Aligned_cols=69 Identities=17% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 000837 1159 VHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1159 ~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 1230 (1262)
...|.+.+++++|.+.++++++.+ +.++..|...+..+...|++++|.+.+++.++ ..|++.+...+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHHHH
Confidence 457889999999999999999863 55788888999999999999999999999998 5787776655443
No 191
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.75 E-value=0.0032 Score=54.17 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=42.5
Q ss_pred cCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHH
Q 000837 1028 VGELGKSLELSQEMRLKGL-VHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAV 1105 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 1105 (1262)
.|++++|+.+++++.+... .++...+..++.+|.+.|++++|+.++++ .+ ..|. ......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666665422 11344444566666666666666666665 22 1222 233334456666666666666
Q ss_pred HHHHH
Q 000837 1106 DLLNI 1110 (1262)
Q Consensus 1106 ~~~~~ 1110 (1262)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.69 E-value=0.027 Score=56.19 Aligned_cols=100 Identities=5% Similarity=-0.147 Sum_probs=66.5
Q ss_pred hhHHHHHHHHhh-hCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCC--CcchHHHHHHHHHhcCCHHHH
Q 000837 230 VERAVLVFDQMR-GRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDL--EKDSFHDVVRLLCRDRKIQES 306 (1262)
Q Consensus 230 ~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~~~~l~~~~~~~g~~~~a 306 (1262)
+..+...+..+. ..+-.-...+|..++..+...|++++|+..|++.+..... + ...++..+...+...|++++|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHH
Confidence 334444444442 3332234567788888888889999999999998876533 2 234677778888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 307 RNLVRKAMAFGLEPSSLVFNEVAYGYC 333 (1262)
Q Consensus 307 ~~~~~~m~~~g~~~~~~~~~~li~~~~ 333 (1262)
...+++..... +.....+..+...|.
T Consensus 92 ~~~~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 92 LEYYFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 88888887653 334455555555555
No 193
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.67 E-value=0.058 Score=54.06 Aligned_cols=97 Identities=10% Similarity=-0.156 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHH
Q 000837 176 HLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLK-SNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRV 254 (1262)
Q Consensus 176 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 254 (1262)
....++...+..+...|++++|...+.+..+....+. ....+..++..|.+.|++++|+..|.+..+..+. +...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 3456788889999999999999999999987643221 2467889999999999999999999999887544 5667777
Q ss_pred HHHHHHhcCchhHHHHHHH
Q 000837 255 FINHLVKMKVTHLAFRVCV 273 (1262)
Q Consensus 255 l~~~l~~~~~~~~A~~~~~ 273 (1262)
+...+...|+...+..-+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHcCChHhHhhCHH
Confidence 8888888877555444433
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.089 Score=55.22 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=65.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1084 DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLC 1163 (1262)
Q Consensus 1084 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 1163 (1262)
|...|..|..+|...|+.+.|...|.+..+. .| +++..+..++.++.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g-------------------------------~n~~~~~g~aeaL~ 201 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AG-------------------------------DNPEILLGLAEALY 201 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CC-------------------------------CCHHHHHHHHHHHH
Confidence 5788888888898889888888888887764 22 24455555555544
Q ss_pred hcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1164 QEG---RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1164 ~~g---~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
... +..++..+|++++... +.|......|+..+...|++++|...|+.|++.
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 332 3446666777776642 334555556666677777777777777777664
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.061 Score=57.67 Aligned_cols=59 Identities=22% Similarity=0.126 Sum_probs=42.2
Q ss_pred hhhHHhhhhhhccCCCHHHHHHHHHHHhhc----CCCCC----hHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 527 VEFFDNLGNGLYLDTDLDEYERKLSKIIED----SMIPN----FNSLIKMVHARGNLKAALLLVDEM 585 (1262)
Q Consensus 527 ~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~----~~~~~----~~~li~~~~~~g~~~~A~~~~~~m 585 (1262)
-..|-++++.|+..|++++|+...+.-+.- +.... +..+..++.-.|+++.|.+.|+..
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 356788899999999999999877654431 22222 666777777788888888777665
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.47 Score=54.18 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=67.5
Q ss_pred CHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 000837 664 ENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLE 743 (1262)
Q Consensus 664 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 743 (1262)
+..+...+...+.+...+.-|.++|..|-+. .+++......+++++|..+-++ .|+..+.++....+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh----CccccccccchHHH
Confidence 4455556666666777777888888777543 3567777888888888877654 35555556666666
Q ss_pred HHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 000837 744 KLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK 799 (1262)
Q Consensus 744 ~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 799 (1262)
-++...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 813 wLAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 6666666666654 344566777777777776543
No 197
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.54 E-value=1.7 Score=47.80 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=103.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHcc--cCChhHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 000837 1085 TINYDNLIKRFCGYGRLDKAVDLLNIMLKKG-STPNSSSYDSIIST--CNKLDPAMDLHAEMMARDLKPSMNTW-HVLVH 1160 (1262)
Q Consensus 1085 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~--~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~ 1160 (1262)
..+|..++++..+..-.+.|..+|-++.+.| ..+++..+..++.. .|+...|..+|+.-+. --||...| +....
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 4567777777777777888889998888887 56778888888877 7888888888888765 34544444 55566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 000837 1161 KLCQEGRTTEAERLLISMVQLGDTPT--QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1161 ~~~~~g~~~~A~~l~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 1230 (1262)
-+.+.++-+.|..+|+..++. +..+ ..+|..++.--.+-|+...+..+-+++.+ ..|...+.....+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~S 543 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTS 543 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHH
Confidence 677788888899999877653 3333 56777777777888888888888888877 5676654444433
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.51 E-value=0.0094 Score=48.90 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhh
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVG-DVERAVLVFDQMRG 242 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 242 (1262)
+.+|..++.++...|++++|...+.+.++.. |.++.+|..+..+|...| ++++|+..|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444444555555555555555555544443 334444444444455444 34455444444433
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.50 E-value=0.027 Score=59.98 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=69.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcC
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPS----MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP----TQEMYSSVVNRYSLEN 1201 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p----~~~~~~~l~~~~~~~g 1201 (1262)
.|++++|+..|+..++ ..|+ +..+..++.+|...|++++|...|+.+++. .| .+..+..++..+...|
T Consensus 156 ~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 156 KSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred cCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 3555566666666554 2342 467889999999999999999999999974 33 3677777888999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhH
Q 000837 1202 NLGKASELMQAMQQSGYSPDFSTH 1225 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~~~~~p~~~~~ 1225 (1262)
++++|..+|+++++ ..|+....
T Consensus 232 ~~~~A~~~~~~vi~--~yP~s~~a 253 (263)
T PRK10803 232 DTAKAKAVYQQVIK--KYPGTDGA 253 (263)
T ss_pred CHHHHHHHHHHHHH--HCcCCHHH
Confidence 99999999999998 46766643
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.46 E-value=0.088 Score=48.15 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=39.3
Q ss_pred HhhcCCChhHHHHHHHHHHHCCCCCC--hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcC
Q 000837 989 GFSKHKDVSSSKYYIAAMVSKGFNPS--NRSLRSVISCLCEVGELGKSLELSQEMRLKGLV--HDSIVQNAIAEGLLSRG 1064 (1262)
Q Consensus 989 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g 1064 (1262)
++-..|+.++|+.+|++.++.|.... ...+..+...+...|++++|..++++....... .+......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 33444555555555555554443332 122333444455555555555555555443100 01222223334455555
Q ss_pred CHHHHHHHHHHHH
Q 000837 1065 KLQEAEHFLDQIV 1077 (1262)
Q Consensus 1065 ~~~~A~~~~~~m~ 1077 (1262)
+.++|++.+-..+
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 6665555554443
No 201
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.43 E-value=2.6 Score=48.71 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHH
Q 000837 821 LEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGH-CEANNLRKVRELLS 899 (1262)
Q Consensus 821 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~-~~~g~~~~a~~~~~ 899 (1262)
.+.+..++..++...|. -..-|......-.+.|..+.+.++|++-.. +++.+...|...+.-+ ...|+.+.....|+
T Consensus 61 ~~~~r~~y~~fL~kyPl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPL-CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34445555555544332 222344455555556666666666666554 3333333333333222 23455555666666
Q ss_pred HHHHC-CCc-cChhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 000837 900 AMIRK-RLS-LSISSYRNLVRWMCMEGGVPWALNLKELMLGQ 939 (1262)
Q Consensus 900 ~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 939 (1262)
.++.. |.. .+...|...+..-..+++......+++.+++.
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 55554 221 23344555555555666666666666666653
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.43 E-value=0.21 Score=56.89 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=55.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHH
Q 000837 219 NLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLC 298 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~ 298 (1262)
.-+..|.+.|.+++|..+ .++-.....|..+...-...=+++-|.+.|.+....
T Consensus 561 ~~m~q~Ieag~f~ea~~i------aclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-------------------- 614 (1081)
T KOG1538|consen 561 APMYQYIERGLFKEAYQI------ACLGVTDTDWRELAMEALEALDFETARKAYIRVRDL-------------------- 614 (1081)
T ss_pred ccchhhhhccchhhhhcc------cccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------------------
Confidence 344567777777776543 222223344666665555555666666666554221
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q 000837 299 RDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMK 349 (1262)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 349 (1262)
++-+...-++++.+.|-.|+.... ...+.-.|++.+|.++|.+-|
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcC
Confidence 122223334566667766666543 344566788888888888764
No 203
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.43 E-value=0.011 Score=47.72 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=33.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 220 LIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
+...+.+.|++++|+..|+++.+..+. +...+..+..++...|++++|...|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344555666666666666666655433 55555666666666666666666666655544
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.42 E-value=0.063 Score=58.42 Aligned_cols=144 Identities=8% Similarity=0.066 Sum_probs=97.2
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISC-LCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEG 1059 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 1059 (1262)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888887532 2233444444443 33356677788888888876 56677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDT---INYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST 1129 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 1129 (1262)
+...|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+. .|+......++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 88889999999999988865 33322 47888888778889999988888888874 4444444444443
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.085 Score=55.37 Aligned_cols=101 Identities=10% Similarity=0.017 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcC---chhHHHHHHHHHHHcCCCCCCCCc
Q 000837 211 LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMK---VTHLAFRVCVDMVVMGNNLTDLEK 287 (1262)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~---~~~~A~~~~~~m~~~g~~~~~~~~ 287 (1262)
|.+.+-|..|..+|...|+++.|...|.+..+..++ +...+..+..++.... ...++..+|++++..++. |+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~----~i 227 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA----NI 227 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc----cH
Confidence 556666777777777777777777777766655322 5555555555555432 244555566666555432 44
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 288 DSFHDVVRLLCRDRKIQESRNLVRKAMAF 316 (1262)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 316 (1262)
.+...+...+...|++.+|...|+.|.+.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555555555555555555555544
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=2.8 Score=48.72 Aligned_cols=156 Identities=8% Similarity=0.071 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHh----------hCChh
Q 000837 302 KIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCS----------IFGSK 371 (1262)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~ 371 (1262)
.+++|.++.+. .|.+..|..+...-.+.-.++.|+..|-+.+.-|.+..-..|-..+.+ -|+++
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 34555555543 688999988888888888999999999988555554333222222222 36777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 000837 372 RADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPD----VHTYNSLISGMFKEGMSKHAKEIL 447 (1262)
Q Consensus 372 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~l~ 447 (1262)
+|.+++-+|-++. ..|..+.+.|++-...+++.. -|-..| ...++.+.+.+.....+++|.+.+
T Consensus 752 eaek~yld~drrD---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred Hhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776665432 234555566666555554432 111111 245666777777666777777766
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000837 448 DEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSE 484 (1262)
Q Consensus 448 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 484 (1262)
...... .-.+.+|.+..++++-..+.+.
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~ 847 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLART 847 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHh
Confidence 554321 1234455555555544444433
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.45 Score=48.30 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=84.5
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHH
Q 000837 982 TYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-----SIVQNAI 1056 (1262)
Q Consensus 982 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l 1056 (1262)
..+.++..+.-.+.+.-.+..+++.++...+.++.....|.+.-.+.|+.+.|..+|+...+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34555666666677777777777777755455666667777777777888888887776554322222 2233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1057 AEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1057 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
...|.-++++..|...+++....+- .|+...|+-..+....|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666777777777777776432 24555666666666677777777777777764
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.31 E-value=0.39 Score=49.48 Aligned_cols=167 Identities=15% Similarity=0.134 Sum_probs=94.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHH
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLV--HDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDT----INYDNLIKRF 1095 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~ 1095 (1262)
...+...|++++|++.|+.+...... --....-.++.++.+.|++++|...+++.++. .|+. ..+-.++.++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 33455667777777777777664211 11445566677777777777777777777663 3331 1222222221
Q ss_pred H-----------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 1096 C-----------GYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQ 1164 (1262)
Q Consensus 1096 ~-----------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 1164 (1262)
. ..+...+|...|+.+++. -|++ .-..+|...+..+.+. -...-..++..|.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S----------~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNS----------EYAEEAKKRLAELRNR----LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTS----------TTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH--CcCc----------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 1 122334666677776664 3442 2344555554444320 11223456777999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHH
Q 000837 1165 EGRTTEAERLLISMVQLGDTPT----QEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1165 ~g~~~~A~~l~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|.+..|..-++.+++. .|+ ......++.+|.+.|..+.|..
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999985 443 4555678888999999885543
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.26 E-value=0.095 Score=47.94 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=25.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 000837 183 VMALMLIRVGMLKEVELLLLAMEREGILLK-SNEIFSNLIQGYVGVGDVERAVLVFDQMRG 242 (1262)
Q Consensus 183 ~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (1262)
..+..+-..|+.++|..++++....|+... ...++..+..+|...|++++|+.+|++...
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444442211 123333444444444444444444444433
No 210
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.12 E-value=0.021 Score=46.68 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 000837 189 IRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRG 244 (1262)
Q Consensus 189 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 244 (1262)
.+.|++++|.+++..+.... |.+..++..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677777777777777665 5567777777777777777777777777777653
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=1 Score=45.82 Aligned_cols=64 Identities=8% Similarity=-0.022 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhc
Q 000837 631 ESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNR 694 (1262)
Q Consensus 631 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 694 (1262)
.+-+.++..+.-.|.+.-....+.+.++...+-++.....|++.-.+.|+.+.|...|++..+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4556677777778888888888888888877778888888888888899999888888876654
No 212
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=4.9 Score=48.28 Aligned_cols=180 Identities=12% Similarity=0.093 Sum_probs=119.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHH
Q 000837 772 AYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCL--DVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISG 849 (1262)
Q Consensus 772 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 849 (1262)
....-+..+++...+.-|+.+.+.- +..++. .......+.+.+.|++++|...|-+.... .+|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3455677788888888888876553 222221 23334455667899999999888776543 2222 35777
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhH
Q 000837 850 FCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWA 929 (1262)
Q Consensus 850 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 929 (1262)
|....++.+-..+++.+.++|+. +...-..|+.+|.+.++.++..+..+..- .|.- ..-....+..+.+.+-.+.|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 78888888888999999999886 55566789999999999988777665432 1111 11245567777777878887
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 930 LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQ 972 (1262)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 972 (1262)
..+-..... +.... --.+-..+++++|++.+..+.
T Consensus 483 ~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcCC
Confidence 766655443 22222 223445688999999887764
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.05 E-value=0.013 Score=42.77 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 000837 1188 EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISN 1231 (1262)
Q Consensus 1188 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 1231 (1262)
.+|..++..|...|++++|+++++++++ ..|++...|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhhh
Confidence 4566777888888888888888888887 57777777777664
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.025 Score=47.74 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC---CC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1152 MNTWHVLVHKLCQEGRTTEAERLLISMVQLG--DT---PT-QEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~--~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
..+++.++..|.+.|++++|+..++++++.. .. |+ ..++..++..|...|++++|++++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999998531 12 22 67788999999999999999999999876
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.98 E-value=0.29 Score=47.44 Aligned_cols=114 Identities=22% Similarity=0.351 Sum_probs=75.7
Q ss_pred HHhcCChHHHHHHHHHHHhC--CC-CCCHHHHHHHHcccCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 000837 1095 FCGYGRLDKAVDLLNIMLKK--GS-TPNSSSYDSIISTCNK-LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTE 1170 (1262)
Q Consensus 1095 ~~~~g~~~~A~~~~~~~~~~--~~-~p~~~~~~~ll~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 1170 (1262)
....++.+.+.+.+.++... |. -|+... .. .......++... ......++..+...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY-------LDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHHH
Confidence 35567888888888888774 22 122111 11 122233333333 2467788888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCChhh
Q 000837 1171 AERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS-----GYSPDFST 1224 (1262)
Q Consensus 1171 A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~ 1224 (1262)
|..++++++.. .+-+...|..++.+|...|+..+|.++|+++.+. |+.|++.+
T Consensus 81 a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 81 ALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 99999999986 3557889999999999999999999999987553 89999884
No 216
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.96 E-value=0.52 Score=50.12 Aligned_cols=261 Identities=12% Similarity=0.066 Sum_probs=141.2
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHC--CCCC---ChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCC---HH
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSK--GFNP---SNRSLRSVISCLCEVGELGKSLELSQEMRLK-GLVHD---SI 1051 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~---~~ 1051 (1262)
.+|..+..+.++.|.+++++..----+.. .... -...|..+..++.+..++.+++.+-..-... |..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 44555666666777666655432211110 0111 1233444555555555566666665544432 22221 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDKD---LVP--DTINYDNLIKRFCGYGRLDKAVDLLNIMLKK----GSTPNSSS 1122 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~ 1122 (1262)
...++..++...+.++++++.|+.+.+-. -.| ....+..|...|....|+++|.-+..+..+. ++..=..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 34456777777788888888888876421 111 2457788888888888888888777665542 22211112
Q ss_pred HHHHH--cc------cCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 000837 1123 YDSII--ST------CNKLDPAMDLHAEMMA----RDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQ----LGDTP 1185 (1262)
Q Consensus 1123 ~~~ll--~~------~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~----~~~~p 1185 (1262)
|..+. .. .|.+.+|.+.-++..+ .|-.| ..-..-.+++.|...|+.+.|..-++.+.. .|-+-
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm 283 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM 283 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
Confidence 22221 11 7887788777777654 23333 234456778889999999988887777653 11110
Q ss_pred -CHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHc----CCCCChhhHHHHHHHhhcccccccc
Q 000837 1186 -TQEMYSSVVNRYSLENNL-----GKASELMQAMQQS----GYSPDFSTHWSLISNLRNSNDKDNN 1241 (1262)
Q Consensus 1186 -~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~----~~~p~~~~~~~~l~~l~~~~~~~~~ 1241 (1262)
.........+.+....-. =+|+++-+++++. |.+-..--....++.+|++.|...+
T Consensus 284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 112222222222211111 3366666666653 3333334456678899988765443
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.91 E-value=0.12 Score=55.09 Aligned_cols=98 Identities=9% Similarity=-0.117 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--ccChhhHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKS---NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGL--VPFLSCYRVF 255 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 255 (1262)
|......+.+.|++++|...|..+++.. |++ +.++..++.+|...|++++|+..|..+.+.-+ .....++-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444444456688888888888888765 333 46777888888888888888888888875422 1234455556
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCC
Q 000837 256 INHLVKMKVTHLAFRVCVDMVVMGN 280 (1262)
Q Consensus 256 ~~~l~~~~~~~~A~~~~~~m~~~g~ 280 (1262)
+..+...|+++.|...|++.++.-+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 6677777888888888887777653
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.87 E-value=0.47 Score=48.86 Aligned_cols=175 Identities=15% Similarity=0.074 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGI-LLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
+++.....+..+...|++.+|...|..+..... .+-.+.+...++.+|.+.|++++|+..|++..+.-|.-....+-..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 467777888888899999999999999987632 2334577778899999999999999999997765433222223322
Q ss_pred HHHHH--h-----------cCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 000837 256 INHLV--K-----------MKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSS 322 (1262)
Q Consensus 256 ~~~l~--~-----------~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 322 (1262)
+.+++ + .+...+|...|++++..-+. +.-..+|...+..+.+. .-.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~------------------S~y~~~A~~~l~~l~~~---la~ 142 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN------------------SEYAEEAKKRLAELRNR---LAE 142 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT------------------STTHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC------------------chHHHHHHHHHHHHHHH---HHH
Confidence 22222 1 12234566666666655533 33344454444444321 001
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcc----cHHHHHHHHHhhCChhHH
Q 000837 323 LVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVL----AGNRIIHTLCSIFGSKRA 373 (1262)
Q Consensus 323 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~li~~~~~~g~~~~A 373 (1262)
. --.+...|.+.|++..|..-++.+ ..-|++. ..-.++.+|.+.|..+.|
T Consensus 143 ~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 H-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp H-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred H-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1 112456677777777777777777 3334433 345677777777776644
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=95.81 E-value=0.2 Score=47.87 Aligned_cols=91 Identities=11% Similarity=-0.060 Sum_probs=73.2
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|..+|.-+.- ..| ++.-|..|+.++-..+++++|+..+..+...+ ..|+..+.+.+.-|...|+.++|..
T Consensus 50 ~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 50 QGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred CCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 8889999998888875 455 66778888888889999999999999888764 3455566778889999999999999
Q ss_pred HHHHHHHcCCCCChhhHH
Q 000837 1209 LMQAMQQSGYSPDFSTHW 1226 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~ 1226 (1262)
.|+..++ .|......
T Consensus 127 ~f~~a~~---~~~~~~l~ 141 (165)
T PRK15331 127 CFELVNE---RTEDESLR 141 (165)
T ss_pred HHHHHHh---CcchHHHH
Confidence 9999988 45555433
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.3 Score=53.35 Aligned_cols=121 Identities=8% Similarity=-0.042 Sum_probs=85.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 000837 1092 IKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTE 1170 (1262)
Q Consensus 1092 ~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 1170 (1262)
.+.|.+.|++..|...|++.... +..- .-+.++. +.... .-...+.+++-+|.+.+++.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~-----------~~~~ee~-~~~~~-------~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRR-----------SFDEEEQ-KKAEA-------LKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccc-----------cCCHHHH-HHHHH-------HHHHHhhHHHHHHHhhhhHHH
Confidence 34577888888888888876652 1000 0000111 11111 123457788888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1171 AERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1171 A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
|++..++.++.+ ++|......-+.+|...|+++.|+..|+++++ +.|++..+-.-|.-|.+
T Consensus 276 Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 276 AIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 999999998864 77788888889999999999999999999998 78988877666655554
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.46 E-value=1.3 Score=43.81 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 000837 1032 GKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNI 1110 (1262)
Q Consensus 1032 ~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1110 (1262)
+-|.--|.+... +.|+ +.+||.|.--+...|+++.|.+.|+...+.+..- ..+.-.-.-++-.-|++.-|.+-+..
T Consensus 82 ~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 82 ALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHH
Confidence 333333444433 4566 7788888888889999999999999998843222 22222223344567899999888777
Q ss_pred HHhCC-CCCCHHHHHHHHcccCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 000837 1111 MLKKG-STPNSSSYDSIISTCNKLDPAMDLH-AEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-- 1186 (1262)
Q Consensus 1111 ~~~~~-~~p~~~~~~~ll~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-- 1186 (1262)
.-+.. ..|=..-|..+....-+..+|..-+ ++..+ .+..-|...+-.|.- |... -+.+++++.+- -..+
T Consensus 159 fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~ 231 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTS 231 (297)
T ss_pred HHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHH
Confidence 66652 1222222222222256666666544 33332 233444333333222 2221 12334444431 1222
Q ss_pred -----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 000837 1187 -----QEMYSSVVNRYSLENNLGKASELMQAMQQSGY 1218 (1262)
Q Consensus 1187 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 1218 (1262)
..+|..|++-|...|+.++|..+|+-.+..++
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 56788899999999999999999999888643
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.39 E-value=5.6 Score=44.02 Aligned_cols=93 Identities=9% Similarity=0.209 Sum_probs=64.6
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 000837 375 LFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRG 454 (1262)
Q Consensus 375 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 454 (1262)
++-+++.+. +.|..+|-.||..+..+|.+++..+.+++|..- ++--...|..-|.+=....+++..+.+|.+.....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444442 456778999999999999999999999998754 22233566666776666778888888888888764
Q ss_pred CccCHHHHHHHHHHHHHc
Q 000837 455 ITPSLSTYRILLAGYCKA 472 (1262)
Q Consensus 455 ~~p~~~~~~~li~~~~~~ 472 (1262)
. +...|...+..-.+.
T Consensus 107 l--~ldLW~lYl~YIRr~ 122 (660)
T COG5107 107 L--NLDLWMLYLEYIRRV 122 (660)
T ss_pred c--cHhHHHHHHHHHHhh
Confidence 4 456666666544443
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.27 E-value=1.5 Score=48.70 Aligned_cols=103 Identities=11% Similarity=-0.003 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHhhhCCCccChh
Q 000837 176 HLPRSCEVMALMLIRVGMLKEVELLLLAMEREGI--LLKSNEIFSNLIQGYVG---VGDVERAVLVFDQMRGRGLVPFLS 250 (1262)
Q Consensus 176 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~--~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 250 (1262)
-++++...+.-.+....+|+.+.++++.+..... .+..+.+-....-++.+ .|+.++|+.++..+....-.++..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 3455555555567777888888888887765521 12233433445555666 788888888888755555556777
Q ss_pred hHHHHHHHHHhc---------CchhHHHHHHHHHHHc
Q 000837 251 CYRVFINHLVKM---------KVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 251 ~~~~l~~~l~~~---------~~~~~A~~~~~~m~~~ 278 (1262)
+|..+++.|-.. ...++|...|.+.-+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 777777665331 2355666666655443
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.25 E-value=6.1 Score=43.62 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHH
Q 000837 947 IFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLC 1026 (1262)
Q Consensus 947 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 1026 (1262)
+.+..+.-+...|+...|.++-.+.. .||..-|...+.+++..+++++-.++... +-++..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444555666666666666654442 25666677777777777777665543221 123466666777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000837 1027 EVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQ 1075 (1262)
Q Consensus 1027 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1075 (1262)
+.|+..+|..++..+. +..-+..|.++|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776666521 13345556667777766655444
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.04 E-value=0.71 Score=44.65 Aligned_cols=69 Identities=25% Similarity=0.406 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLK-----KGSTPNSSS 1122 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 1122 (1262)
+...++..+...|++++|....+.+... .| +...|..+|.+|...|+..+|++.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 5566777788888888888888888874 33 577888888888889998888888887654 266666544
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=11 Score=44.96 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=73.1
Q ss_pred cCCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCH--HHHHHHHHHHhhcCC
Q 000837 764 QGCNLDQMAYSH-----LIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRL--EKAVALREISLKEQP 836 (1262)
Q Consensus 764 ~g~~~d~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~ 836 (1262)
-|++.+..-|.. +|+-+...+.+..|+++-..+...-... ..+|......+.+..+. +++.+.+++-.+...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 455555554443 4667777888888888877764332222 56666666666655322 223333332222222
Q ss_pred CchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC-C---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGML-L---EDEVYNMLIQGHCEANNLRKVRELLSAMIR 903 (1262)
Q Consensus 837 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p---d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 903 (1262)
. ...+|..+...-...|+.+-|..+++.=...+.. | +..-+...+.-+.+.|+.+....++-.+.+
T Consensus 505 ~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 T-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred C-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2 3445777777777888888887776543221110 0 111233334444555666655555555544
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.98 E-value=1.4 Score=39.82 Aligned_cols=139 Identities=17% Similarity=0.279 Sum_probs=81.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHH
Q 000837 1062 SRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHA 1141 (1262)
Q Consensus 1062 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~ 1141 (1262)
-.|.+++..+++.+.... .+..-+|..|--....-+=+-..+.++..=+. -| +..+|++...+.-+-
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD-------is~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD-------ISKCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--------GGG-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------chhhcchHHHHHHHH
Confidence 356677777777776642 23444555554444343433333333332211 00 111677766666655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 000837 1142 EMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYS 1219 (1262)
Q Consensus 1142 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 1219 (1262)
.+- .+....+.....+..+|+-++-.+++..+.+. -.++++....++.+|.+.|+..+|.+++.++.+.|++
T Consensus 81 ~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 81 KRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred Hhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 442 35566777778888999999999999988764 4788999999999999999999999999999998754
No 228
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.98 E-value=0.08 Score=43.89 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=34.4
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 222 QGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
..|.+.+++++|+.+++.+...++. ++..|......+.+.|++++|...|++.++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455666666666666666665544 55556666666666666666666666666554
No 229
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.90 E-value=7.2 Score=42.52 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=53.3
Q ss_pred cHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 000837 1017 SLRSVISCLCEVGELG---KSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIK 1093 (1262)
Q Consensus 1017 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 1093 (1262)
++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+++.+.+.+|+..-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 3445566666655543 455555555443 2223555555556666677788888888888764111 2233444443
Q ss_pred HHH--hcCChHHHHHHHHHHHhCCCCCCH
Q 000837 1094 RFC--GYGRLDKAVDLLNIMLKKGSTPNS 1120 (1262)
Q Consensus 1094 ~~~--~~g~~~~A~~~~~~~~~~~~~p~~ 1120 (1262)
.+. .......|...+..++.....|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 331 123334566666665554444443
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=2.1 Score=43.35 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000837 172 KGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMER 206 (1262)
Q Consensus 172 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~ 206 (1262)
|++......|...+..+..+++|+.|..-|.+..+
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 56777889999999999999999999998887763
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=94.79 E-value=0.37 Score=46.08 Aligned_cols=97 Identities=9% Similarity=-0.137 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHH
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 257 (1262)
.+.....+.-+...|++++|+.+|.-+.-.. +-+++-|..|...|-..+++++|+..|...-..+. -|+..+-....
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agq 113 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHH
Confidence 3445566667778888888888888877655 34667777888888888888888888887654432 24444556777
Q ss_pred HHHhcCchhHHHHHHHHHHH
Q 000837 258 HLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~ 277 (1262)
++...|+.+.|...|...+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 88888888888888877766
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.72 E-value=0.3 Score=45.22 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 000837 322 SLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTC 400 (1262)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 400 (1262)
..++..++.++++.|+++....+.++. |...+...- .+. --......|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 455666666677777777666666665 222111000 000 0011234566666666666666
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 000837 401 REGNLRSALVFFSEILSR-GLNPDVHTYNSLISGM 434 (1262)
Q Consensus 401 ~~g~~~~A~~~~~~m~~~-g~~p~~~~y~~li~~~ 434 (1262)
.+|++..|+++.+...+. +++-+..+|..|+.-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 666666666666655544 4444455555555443
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=1.9 Score=45.53 Aligned_cols=159 Identities=17% Similarity=0.113 Sum_probs=97.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHcc-----cCC
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS--SSYDSIIST-----CNK 1132 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~-----~g~ 1132 (1262)
+...|++.+|...++++++. .+.|..+++.--.+|...|+.+.-...+++.+-+ ..||. .+|..-+.+ +|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34567777777777777764 4446777777777777788877777777777654 22333 223222222 788
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHhHHH
Q 000837 1133 LDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP----TQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
+++|.+.-++..+ ++| |...-..+++.+.-.|++.++.+...+-.+. ... -...|=+..--+...+.++.|+
T Consensus 191 y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 8888887777765 555 5566677777788888888887766654321 111 0222323333345557788888
Q ss_pred HHHHHHHHcCCCCChh
Q 000837 1208 ELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1208 ~~~~~~~~~~~~p~~~ 1223 (1262)
++|++-+-..+.-++.
T Consensus 268 eIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHhhccch
Confidence 8877544433444433
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.63 E-value=6.5 Score=40.80 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREG-ILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
++..+..-+....+.|++++|.+.|+.+..+. ..+-++.+-..++.++.+.+++++|+..+++-...-+.-.-..|-.-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 44555555566678899999999999998664 22335677788999999999999999999987665443333446556
Q ss_pred HHHHHhcC-------c---hhHHHHHHHHHHHcC
Q 000837 256 INHLVKMK-------V---THLAFRVCVDMVVMG 279 (1262)
Q Consensus 256 ~~~l~~~~-------~---~~~A~~~~~~m~~~g 279 (1262)
+.++.... + ...|..-|++.+..-
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 66555421 2 334555556665554
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.57 E-value=7.1 Score=41.00 Aligned_cols=216 Identities=17% Similarity=0.141 Sum_probs=137.0
Q ss_pred CChhHHHHHHHHHHHCCCC-CChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000837 994 KDVSSSKYYIAAMVSKGFN-PSNRSLRSVISCLCEVGELGKSLELSQEMRLK-GLVHDSIVQNAIAEGLLSRGKLQEAEH 1071 (1262)
Q Consensus 994 g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~ 1071 (1262)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555555555543211 12345555666677777777777777766642 233345666666777777777788888
Q ss_pred HHHHHHhCCCCCCHhHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHcc---cCChhHHHHHHHHH
Q 000837 1072 FLDQIVDKDLVPDTINYDNLIK-RFCGYGRLDKAVDLLNIMLKKGSTP----NSSSYDSIIST---CNKLDPAMDLHAEM 1143 (1262)
Q Consensus 1072 ~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~ll~~---~g~~~~A~~~~~~~ 1143 (1262)
.+.........+ ......... .+...|+.++|...+.+.... .| ....+...... .++.+.|...+.+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 887777643332 122222223 677788888888888887552 23 11111111111 67788888888888
Q ss_pred HHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1144 MARDLKP--SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1144 ~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
.+ ..+ ....+..+...+...+++++|...+...... .|+ ...+..+...+...|..+++...+++....
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76 333 3567788888888888899999999888874 343 556666666777777788888888888873
No 236
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.50 E-value=19 Score=45.50 Aligned_cols=190 Identities=15% Similarity=0.100 Sum_probs=103.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChh
Q 000837 953 FHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELG 1032 (1262)
Q Consensus 953 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 1032 (1262)
-+...+.++.+-+-+++++... .++..-| .|+. ..++++.|+.-+.++- ...|.-.++.--+.|-++
T Consensus 859 VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~--~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~ 925 (1265)
T KOG1920|consen 859 VAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDD--YLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYD 925 (1265)
T ss_pred HHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHHH--HHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccch
Confidence 3344556666666666666632 1221111 1121 1244555554444432 123333444445566667
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1033 KSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1033 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
+|+.++..=.+. -..+|.+.++-|...+.+++|.-+|+..=+ ...-+.+|..+|+|.+|+.+..++.
T Consensus 926 ~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 926 EALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred hhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 666664422111 134555566666677778888777766532 1223566777888888888877654
Q ss_pred hCCCCCCHHH--HHHHHcc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1113 KKGSTPNSSS--YDSIIST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMV 1179 (1262)
Q Consensus 1113 ~~~~~p~~~~--~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~ 1179 (1262)
.- -+... -..|... .++.-+|-+++++... . ....+..|++...+++|.++.....
T Consensus 993 ~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 993 EG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred CC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 31 11111 1222222 7777777777777653 1 3455666788888888888776654
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.46 E-value=0.12 Score=43.58 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 000837 1051 IVQNAIAEGLLSRGKLQEAEHFLDQIVDK----D-LVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1051 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
.+++.+...|...|++++|+..|++.++. | -.|+ ..++..+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555556666666666666666555431 1 0122 44566666666777777777766666543
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=2.7 Score=42.57 Aligned_cols=162 Identities=10% Similarity=-0.031 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHH
Q 000837 960 NIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQ 1039 (1262)
Q Consensus 960 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 1039 (1262)
.++.|.-+.++|.+- .--+..|+-....|...|.++.|-..+++.-+. .+.-++++|+++++
T Consensus 73 ayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYq 134 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQ 134 (308)
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHH
Confidence 345555555555542 112344556666777777777776666665541 12334555666655
Q ss_pred HHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 000837 1040 EMRLKGLVH-----DSIVQNAIAEGLLSRGKLQEAEHFLDQIVD----KDLVPD-TINYDNLIKRFCGYGRLDKAVDLLN 1109 (1262)
Q Consensus 1040 ~~~~~g~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 1109 (1262)
.....-... -...+..+..+|.+..++++|-..|.+-.. -.-.|+ ...|...|..|....++..|.+.++
T Consensus 135 ralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 135 RALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 544321111 123444455566666777766555544321 111222 2345666666777778888888877
Q ss_pred HHHhCCC---CCCHHHHHHHHcc--cCChhHHHHH
Q 000837 1110 IMLKKGS---TPNSSSYDSIIST--CNKLDPAMDL 1139 (1262)
Q Consensus 1110 ~~~~~~~---~p~~~~~~~ll~~--~g~~~~A~~~ 1139 (1262)
.-.+.+- .-+..+..-|+.+ .|+.+++.++
T Consensus 215 ~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 215 DCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKV 249 (308)
T ss_pred chhcCccccChHHHHHHHHHHHHhccCCHHHHHHH
Confidence 7554321 1223344444444 5555554443
No 239
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.41 E-value=10 Score=41.99 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 000837 912 SYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFS 991 (1262)
Q Consensus 912 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 991 (1262)
+.+.-+.-+...|....|.++..+.. -|+-..|...+.+|+..++|++-.++... +-+++.|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445666677888888887766652 36788899999999999999887665432 124588899999999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEM 1041 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 1041 (1262)
+.|...+|..+..+ ..+..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888776 22245677889999999998764443
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.39 E-value=0.98 Score=50.80 Aligned_cols=68 Identities=16% Similarity=-0.010 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccCh--hhHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 000837 211 LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFL--SCYRVFINHLVKMKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~l~~~~~~~~A~~~~~~m~~~ 278 (1262)
|+.+..++.+..+|...|++++|+..|++..+.++.... .+|..+..+|.+.|++++|+..|+++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566666666666666666666666666555433111 34566666666666666666666666553
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.39 E-value=0.57 Score=48.74 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQL-GDTP-TQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
.+..+.+|+..++..|++++|...|..+.+. +-.| -+..+.-|+......|+.++|...|+.+.+. -|+.+
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 3456788999999999999999999999873 1112 2688888999999999999999999999885 55544
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.32 E-value=0.98 Score=53.17 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=69.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHC--CCCC-CHHHHHHHHHHHHhcCCHHH
Q 000837 1098 YGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMAR--DLKP-SMNTWHVLVHKLCQEGRTTE 1170 (1262)
Q Consensus 1098 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~ 1170 (1262)
....+.|.++++.+.+. .|+...|...-.. .|++++|++.|++.... ..+. ....+.-+++.+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 44566777777777764 5665554443333 77777777777765531 1111 33456677778888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCH-------hHHHHHHHHHHH
Q 000837 1171 AERLLISMVQLGDTPTQEMYS-SVVNRYSLENNL-------GKASELMQAMQQ 1215 (1262)
Q Consensus 1171 A~~l~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 1215 (1262)
|.+.+.++.+.+ .=+..+|. ..+-.+...|+. ++|.++++++-.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888742 11222222 233335566777 777777765543
No 243
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.31 E-value=2.6 Score=41.83 Aligned_cols=68 Identities=15% Similarity=-0.075 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 211 LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
|+-+.+||.|+--+...|+++.|.+.|+...+.++.-+.. ...-..++.--|+++.|.+-+.+.-..+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-HhccceeeeecCchHhhHHHHHHHHhcC
Confidence 5556777777777777777777777777776665442211 1112223334466666666555554444
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.31 E-value=8.1 Score=40.56 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH-H
Q 000837 912 SYRNLVRWMCMEGGVPWALNLKELMLGQ-NKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIY-G 989 (1262)
Q Consensus 912 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~-~ 989 (1262)
.+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3333444444444455444444444331 112233334444444444555555555555554432221 111111111 3
Q ss_pred hhcCCChhHHHHHHHHHHHCCCCC----ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 000837 990 FSKHKDVSSSKYYIAAMVSKGFNP----SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVH-DSIVQNAIAEGLLSRG 1064 (1262)
Q Consensus 990 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g 1064 (1262)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcc
Confidence 4455555555555555533 111 1111111222233444444444444444443 111 2334444444444444
Q ss_pred CHHHHHHHHHHHHh
Q 000837 1065 KLQEAEHFLDQIVD 1078 (1262)
Q Consensus 1065 ~~~~A~~~~~~m~~ 1078 (1262)
+.+.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 44444444444443
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=17 Score=44.07 Aligned_cols=55 Identities=7% Similarity=-0.006 Sum_probs=31.9
Q ss_pred HHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 530 FDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN-----FNSLIKMVHARGNLKAALLLVDEMVR 587 (1262)
Q Consensus 530 ~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 587 (1262)
....+..++++..+.-|..+-+. .+..++ .....+-+.+.|++++|...|-+.+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 34456666677777777665543 222222 23334455667888888877766654
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.27 E-value=1.1 Score=42.05 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREG-ILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
++..+..-+....+.|+|++|...|+.+..+- ..+-.+.+-..|+.+|.+.+++++|+..+++.++..+.---.-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 56667777788889999999999999998763 12235577789999999999999999999999988776444566666
Q ss_pred HHHHHhcCc
Q 000837 256 INHLVKMKV 264 (1262)
Q Consensus 256 ~~~l~~~~~ 264 (1262)
+.+|.....
T Consensus 89 ~~gL~~~~~ 97 (142)
T PF13512_consen 89 MRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHH
Confidence 666655443
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.26 E-value=0.19 Score=56.26 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-Q---EMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
++..|+.++.+|.+.|++++|+..++++++. .|+ . .+|+.++..|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677788888888888888888888888774 454 2 34777888888888888888888887774
No 248
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.25 E-value=14 Score=43.08 Aligned_cols=129 Identities=11% Similarity=0.107 Sum_probs=95.4
Q ss_pred HHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 000837 530 FDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCAS 607 (1262)
Q Consensus 530 ~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 607 (1262)
+..++.---...+.+.+...+..++..-|.-. |-..+.--.+.|..+.+.++|++-+.. +..++..|...+..++..
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~ 126 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNN 126 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcc
Confidence 33444444444445556666666665554433 666666678899999999999998874 667888898888888887
Q ss_pred CCchHHHHHHHHHhhhhcC-CC-ChHHHHHHHHHHHccCChHHHHHHHHHHhhc
Q 000837 608 RSHIKACTGLLEKMPKLAN-KL-DQESLNLLIQACCKKGLVRDGKKIFDGMLQR 659 (1262)
Q Consensus 608 ~~~~~~a~~l~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 659 (1262)
..+.+...++|+.....-. .. ....|...|.--...+++.....++++.++.
T Consensus 127 ~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 127 NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 7778888889988876433 33 6777888888888888999999999999875
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.18 E-value=8.2 Score=40.10 Aligned_cols=190 Identities=12% Similarity=0.126 Sum_probs=110.3
Q ss_pred CChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHH
Q 000837 1013 PSNRSLRSVISCLCEVGELGKSLELSQEMRLKGL--VHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKD-LVPDTINYD 1089 (1262)
Q Consensus 1013 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~ 1089 (1262)
|-...|+.-+. -.+.|++++|.+.|+.+..... +-...+.-.++.++.+.+++++|+..+++....- -.|| .-|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33444544433 4467888888888888876421 1225666677778888888888888888887642 2222 2344
Q ss_pred HHHHHHHh-------cCChHH---HHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 1090 NLIKRFCG-------YGRLDK---AVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLV 1159 (1262)
Q Consensus 1090 ~l~~~~~~-------~g~~~~---A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 1159 (1262)
..+.+++. ..|..- |..-|+++++. -|++. =..+|...+..+.+. -...=..++
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~----------Ya~dA~~~i~~~~d~----LA~~Em~Ia 174 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR----------YAPDAKARIVKLNDA----LAGHEMAIA 174 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc----------chhhHHHHHHHHHHH----HHHHHHHHH
Confidence 44444432 122222 33333333332 33321 011222222222210 011224566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1160 HKLCQEGRTTEAERLLISMVQLGDTPT---QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1160 ~~~~~~g~~~~A~~l~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
+-|.+.|.+..|..-++.|++. ++.+ ...+..+..+|...|-.++|.+.-+-+.. -.|+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~--N~p~s~ 238 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA--NYPDSQ 238 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh--cCCCCc
Confidence 7789999999999999999986 4443 34455677889999999999997776655 355543
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.12 E-value=3.8 Score=43.95 Aligned_cols=129 Identities=15% Similarity=0.083 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhhHHHHHHHhhcCCChhHHHHHHHHHHH----CCCCCChhcH-
Q 000837 949 NILVFHLMSSGNIFHVKRVLDELQENEL-----LPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVS----KGFNPSNRSL- 1018 (1262)
Q Consensus 949 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~- 1018 (1262)
-+|..+....+.++++++.|+...+.-. ...-..+..|...|.+..|+++|.-+..+..+ .++..-..-|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3455666667777888887777654311 11235567777778888888888776666554 1222222222
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1019 ----RSVISCLCEVGELGKSLELSQEMRL----KGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1019 ----~~li~~~~~~g~~~~A~~~~~~~~~----~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
..|.-++...|++.+|.+..++..+ .|-.+- ......+.++|...|+.+.|..-|+++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234467778888888888887655 332221 3344567788888888888877777765
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.10 E-value=17 Score=45.74 Aligned_cols=20 Identities=0% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHHc
Q 000837 329 AYGYCEKKDFEDLLSFFTEM 348 (1262)
Q Consensus 329 i~~~~~~g~~~~A~~~~~~~ 348 (1262)
+.-++..+++.+|.++.++-
T Consensus 684 vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 684 VRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455556666665555554
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.09 E-value=1.7 Score=39.36 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=59.1
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhCCCchHHHH
Q 000837 539 LDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSV---FSALVKGLCASRSHIKACT 615 (1262)
Q Consensus 539 ~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~~a~ 615 (1262)
..|..++..+++.+.....+...+|..|.-....-+-+-..+.++..-+ --|... .-..+.++...+.
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK------ 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT-------
T ss_pred HhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc------
Confidence 3566666777776666665555555555544433333333333333321 111111 1223333333333
Q ss_pred HHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 000837 616 GLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRK 695 (1262)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 695 (1262)
+....+.-++.+.+.|+-+.-.++...+... -.+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444455555555555555555555432 23455555555666666666666666666555554
No 253
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.99 E-value=21 Score=44.10 Aligned_cols=190 Identities=17% Similarity=0.101 Sum_probs=87.5
Q ss_pred hcCCChhHHHHHHHHHHHCC-CCCC-----hhcHHHHHH--HHHhcCChhHHHHHHH--------HHHHcCCCCCHHHHH
Q 000837 991 SKHKDVSSSKYYIAAMVSKG-FNPS-----NRSLRSVIS--CLCEVGELGKSLELSQ--------EMRLKGLVHDSIVQN 1054 (1262)
Q Consensus 991 ~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~--~~~~~g~~~~A~~~~~--------~~~~~g~~~~~~~~~ 1054 (1262)
+-.+++..|....+.|.+.- -.|+ ...+..++. .+...|+++.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 34567777777777777531 1111 112222222 3344678888888886 333444444433333
Q ss_pred H--HHHHHHhcCC--HHH--HHHHHHHHHhC-CCCC--CHhHHHHH-HHHHHhc--CChHHHHHHHHHHHhCC--CCCCH
Q 000837 1055 A--IAEGLLSRGK--LQE--AEHFLDQIVDK-DLVP--DTINYDNL-IKRFCGY--GRLDKAVDLLNIMLKKG--STPNS 1120 (1262)
Q Consensus 1055 ~--l~~~~~~~g~--~~~--A~~~~~~m~~~-~~~p--~~~~~~~l-~~~~~~~--g~~~~A~~~~~~~~~~~--~~p~~ 1120 (1262)
. ++..+...+. .++ +.++++.+... .-.| +..++..+ +.++... -...++...+.+.++.- -..+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 1222222222 222 55666655431 1122 23333333 3333211 12224444443332210 11111
Q ss_pred HH---HHHHHcc---cCChhHHHHHHHHHHHCC-CCC--CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1121 SS---YDSIIST---CNKLDPAMDLHAEMMARD-LKP--SMNTW-----HVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1121 ~~---~~~ll~~---~g~~~~A~~~~~~~~~~~-~~p--~~~~~-----~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
.. ...++.. .|+..+..+......... -.| ....| ..+...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 1222222 588777766666544311 112 33445 2344457788999999998887654
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.85 E-value=0.73 Score=41.42 Aligned_cols=86 Identities=23% Similarity=0.265 Sum_probs=68.2
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT---QEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~ 1205 (1262)
.|+++.|++.|.+.+. +.| .+..|+.-+.++.-+|+.++|++=++++++..-.-+ ...|..-+-.|...|+.+.
T Consensus 56 ~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 56 AGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred ccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 6778888888888775 555 778899999999999999999999999998522222 3455566777999999999
Q ss_pred HHHHHHHHHHcC
Q 000837 1206 ASELMQAMQQSG 1217 (1262)
Q Consensus 1206 A~~~~~~~~~~~ 1217 (1262)
|..-|+..-+-|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 999998887765
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.65 E-value=0.19 Score=36.51 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVN 1195 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~ 1195 (1262)
.+|..++..|.+.|++++|+++++++++. .+.|+..|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhhh
Confidence 46889999999999999999999999996 3556888777653
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.58 E-value=0.29 Score=51.79 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=75.7
Q ss_pred HHHHHhhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 000837 162 EIFKWASKLYKGFRH-LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQM 240 (1262)
Q Consensus 162 ~~f~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (1262)
+||.|+..+..-|.. -..++..++..+...++++.+.+.+.+++... |-+...|..++.+|...|+...|+..|+++
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 489999877433321 24467788888999999999999999999876 557789999999999999999999999988
Q ss_pred hh-----CCCccChhhHHHHHHH
Q 000837 241 RG-----RGLVPFLSCYRVFINH 258 (1262)
Q Consensus 241 ~~-----~~~~p~~~~~~~l~~~ 258 (1262)
.+ .|+.|...+.......
T Consensus 214 ~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 214 KKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHhhhhcCCCccHHHHHHHHHH
Confidence 64 6888877766655554
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=93.51 E-value=1.3 Score=49.96 Aligned_cols=141 Identities=15% Similarity=0.119 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHH-hCCCCCC-HhHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHH---HHHHHcc-
Q 000837 1065 KLQEAEHFLDQIV-DKDLVPD-TINYDNLIKRFCGY---------GRLDKAVDLLNIMLKKGSTPNSSS---YDSIIST- 1129 (1262)
Q Consensus 1065 ~~~~A~~~~~~m~-~~~~~p~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~- 1129 (1262)
..+.|+.+|.+.. ...+.|+ ...|..+..++... ....+|.++.++..+.+ |+... ....+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 4678888999988 2225666 66777766555321 23345566666666642 32222 2222222
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT---QEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~ 1205 (1262)
.++++.|...|++... ++|| +.+|...+..+.-.|+.++|.+.+++..+. .|. ..+....++.|+.. -.++
T Consensus 351 ~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~ 425 (458)
T PRK11906 351 SGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKN 425 (458)
T ss_pred hcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhh
Confidence 6668888888888776 6774 567777777777788888888888887764 443 23333333344444 3466
Q ss_pred HHHHHHH
Q 000837 1206 ASELMQA 1212 (1262)
Q Consensus 1206 A~~~~~~ 1212 (1262)
|+.+|-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 6666654
No 258
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.50 E-value=0.85 Score=42.26 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 389 EITFGILIGWTCREGNLRSALVFFSEIL---------------SRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR 453 (1262)
Q Consensus 389 ~~ty~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 453 (1262)
..++.++|.++++.|+++....+++..- .....|+..+..+++.+|+.+|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555555555555555554331 2345688888899999999999999999988887775
Q ss_pred -CCccCHHHHHHHHHH
Q 000837 454 -GITPSLSTYRILLAG 468 (1262)
Q Consensus 454 -g~~p~~~~~~~li~~ 468 (1262)
+++-+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 666677888888764
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.35 E-value=14 Score=40.18 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=9.8
Q ss_pred HHHcCCHHHHHHHHHH
Q 000837 469 YCKARQFDEAKIMVSE 484 (1262)
Q Consensus 469 ~~~~g~~~~A~~l~~~ 484 (1262)
..+.+++++|.+.++-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3455667777666654
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.23 E-value=1 Score=40.60 Aligned_cols=99 Identities=15% Similarity=-0.004 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCccCh--hhHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGR-GLVPFL--SCYRVFIN 257 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~--~~~~~l~~ 257 (1262)
...-+..+++.|+++.|.+.|.+.+..- |..+.+||.-..+|.-+|+.++|++-+++..+. |.+.-. .+|-.-..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3445566777777777777777766554 556677777777777777777777777776653 333111 22333333
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCC
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNN 281 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~ 281 (1262)
.|...|+-+.|..-|+..-+.|.+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 455566666776666666666543
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.09 E-value=2.9 Score=41.13 Aligned_cols=86 Identities=13% Similarity=0.005 Sum_probs=63.1
Q ss_pred cCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP--SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
+|++++|...++......-.. ...+--.|+......|.+|+|+++++...+.++ .+.....-++++...|+.++|+
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar 179 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEAR 179 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHH
Confidence 788888888888776411111 122334677788999999999999998765322 2334556799999999999999
Q ss_pred HHHHHHHHcC
Q 000837 1208 ELMQAMQQSG 1217 (1262)
Q Consensus 1208 ~~~~~~~~~~ 1217 (1262)
..|++.++.+
T Consensus 180 ~ay~kAl~~~ 189 (207)
T COG2976 180 AAYEKALESD 189 (207)
T ss_pred HHHHHHHHcc
Confidence 9999999974
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.98 E-value=0.85 Score=47.52 Aligned_cols=101 Identities=17% Similarity=0.045 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCc-c-ChhhHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGIL-LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLV-P-FLSCYRVFIN 257 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~l~~ 257 (1262)
.+..+--+.++|+|..|...|...++.... .-.+.++.+|+.++...|++++|..+|..+.+.-+. | .+.+.-.+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444556678889999999999999987521 224678899999999999999999999998775332 2 3478888999
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCC
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNN 281 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~ 281 (1262)
++.+.|+.++|...|++..+.-+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999987643
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.86 E-value=1.8 Score=40.58 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=58.3
Q ss_pred cCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCC---
Q 000837 1130 CNKLDPAMDLHAEMMAR-DLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD-TPT-QEMYSSVVNRYSLENN--- 1202 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~--- 1202 (1262)
.|++++|++.|+.+... -..| ....--.++.+|.+.|++++|...+++.+++.. .|+ ...+...+-++.....
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~ 102 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSL 102 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHH
Confidence 56677777777766652 1111 345667888889999999999999999888522 111 3444444444555544
Q ss_pred ------------HhHHHHHHHHHHHcCCCCChh
Q 000837 1203 ------------LGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1203 ------------~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
..+|...|+.+++. -|+.+
T Consensus 103 ~~~~~~drD~~~~~~A~~~f~~lv~~--yP~S~ 133 (142)
T PF13512_consen 103 QSFFRSDRDPTPARQAFRDFEQLVRR--YPNSE 133 (142)
T ss_pred hhhcccccCcHHHHHHHHHHHHHHHH--CcCCh
Confidence 66777777777773 55543
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.72 E-value=4.9 Score=42.68 Aligned_cols=151 Identities=13% Similarity=-0.055 Sum_probs=103.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHH----HHHHHhhCCh
Q 000837 297 LCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRI----IHTLCSIFGS 370 (1262)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l----i~~~~~~g~~ 370 (1262)
+...|++.+|-..++++++. +|.|...+...=.+|...|+.+.-...++++ ...||...|.-+ .-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 44578888888888888865 4778888888888888899988888888888 457777655433 3444567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 000837 371 KRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSR---GLNPDVHTYNSLISGMFKEGMSKHAKEIL 447 (1262)
Q Consensus 371 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~y~~li~~~~~~g~~~~A~~l~ 447 (1262)
++|++.-++..+.+ +-|...-.++...+--.|+..++.++..+-... +--.-.+.|--..-.+...+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99988888877765 456777778888888888888888876653321 10001122222222344556777777777
Q ss_pred HH
Q 000837 448 DE 449 (1262)
Q Consensus 448 ~~ 449 (1262)
++
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 53
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=92.68 E-value=5.7 Score=45.04 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 000837 230 VERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNL 309 (1262)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (1262)
..+|++.-++..+.+.. |+.+...+..++.-.++++.|..+|++....++. ...+|......+.-.|+.++|.+.
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn----~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD----IASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444455555554433 4455555555445555555555555555554422 223333333444445555555555
Q ss_pred HHHHHHC
Q 000837 310 VRKAMAF 316 (1262)
Q Consensus 310 ~~~m~~~ 316 (1262)
+++..+.
T Consensus 395 i~~alrL 401 (458)
T PRK11906 395 IDKSLQL 401 (458)
T ss_pred HHHHhcc
Confidence 5554443
No 266
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=13 Score=37.66 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHhC--CCCCCHHHHHHHHcc------cCChhHHHHHHHHHHHC
Q 000837 1099 GRLDKAVDLLNIMLKK--GSTPNSSSYDSIIST------CNKLDPAMDLHAEMMAR 1146 (1262)
Q Consensus 1099 g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~------~g~~~~A~~~~~~~~~~ 1146 (1262)
.+.++|+..|+..-+. |-+.+...--+++.. .+++.+|+++|+++...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555442 223333323333332 66677777777776653
No 267
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=1.4 Score=48.53 Aligned_cols=124 Identities=12% Similarity=0.098 Sum_probs=86.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhC-----CCc---------cChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCC
Q 000837 220 LIQGYVGVGDVERAVLVFDQMRGR-----GLV---------PFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDL 285 (1262)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~-----~~~---------p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~ 285 (1262)
-+..|.+.|++..|...|++.... +.. .-..+++-+.-++.|.+++..|+...++.++.+. +
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~----~ 289 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP----N 289 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC----C
Confidence 344677888888888888774321 111 1234677777788888888888888888888775 4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHc
Q 000837 286 EKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDL-LSFFTEM 348 (1262)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 348 (1262)
|+...-.-..+|...|+++.|+..|+++.+.. |.|..+-+-++..-.+..+..+. .++|..|
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888764 34455555566555555544433 5677777
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.22 E-value=7.1 Score=37.46 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=45.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPSMN---TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKA 1206 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 1206 (1262)
.|+...|+..|.++-...-.|... .--.-+..+...|-+++....++-+..-+-+-..+.-..|+-+-.+.|++.+|
T Consensus 107 kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A 186 (221)
T COG4649 107 KGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKA 186 (221)
T ss_pred cccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHH
Confidence 455555555555554422222111 11122233455566666555555544333223344555666666666666666
Q ss_pred HHHHHHHHHcCCCCC
Q 000837 1207 SELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1207 ~~~~~~~~~~~~~p~ 1221 (1262)
.+.|+.+.+....|.
T Consensus 187 ~~~F~qia~Da~apr 201 (221)
T COG4649 187 KSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHHccccCcH
Confidence 666666655444443
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.10 E-value=17 Score=39.60 Aligned_cols=142 Identities=10% Similarity=0.095 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHHHHHHHHcc-cCC----hh
Q 000837 1069 AEHFLDQIVDKDLVPDTINYDNLIKRFCG--Y----GRLDKAVDLLNIMLKKGS---TPNSSSYDSIIST-CNK----LD 1134 (1262)
Q Consensus 1069 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~ll~~-~g~----~~ 1134 (1262)
.+.+++.|.+.|..-+..+|-+....... . ....+|.++|+.|.+... .++...+..++.. .++ .+
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~ 160 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAE 160 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHH
Confidence 34455555555555444443332211111 1 223456666666666421 3455556666555 333 34
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 000837 1135 PAMDLHAEMMARDLKPSMN--TWHVLVHKLCQEGR--TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELM 1210 (1262)
Q Consensus 1135 ~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 1210 (1262)
....+|+.+.+.|+..+.. ....++..+..... ...+..+++.+.+.|+++....|..+|-.....+..++..+-+
T Consensus 161 ~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i 240 (297)
T PF13170_consen 161 RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEI 240 (297)
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHH
Confidence 4455566666556655322 12222211111111 3356667777777776666655655543333333332433333
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.02 E-value=5.2 Score=45.39 Aligned_cols=57 Identities=11% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc-CCCCC---cccHHHHHHHHHhhCChhHHHHHHHHHHH
Q 000837 326 NEVAYGYCEKKDFEDLLSFFTEM-KCTPD---VLAGNRIIHTLCSIFGSKRADLFVQELEH 382 (1262)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 382 (1262)
-.+..++-+.|+.++|++.|++| ...|. ......||.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444445556666666666666 22221 22344566666666666666666665543
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.82 E-value=3.5 Score=48.60 Aligned_cols=136 Identities=18% Similarity=0.070 Sum_probs=67.6
Q ss_pred CChhHHHHHHhcccccchhcccchhhHHHHHHHHHHhhcccCCCCCCHHH-----HHHHHHHHHH----cCChHHHHHHH
Q 000837 131 LKPENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRS-----CEVMALMLIR----VGMLKEVELLL 201 (1262)
Q Consensus 131 l~p~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~-----~~~l~~~l~~----~~~~~~a~~~l 201 (1262)
+=|..+++++.-+.|...+ +..++....+... ++.+...-+ |+.++..+.. ....+.|.+++
T Consensus 186 lLPp~~~kll~~vGF~gdR--------~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 186 LLPPKVLKLLSFVGFSGDR--------ELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred hCCHHHHHHHhhcCcCCcH--------HHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHH
Confidence 4455566666555554432 3456666666543 444433222 3333332222 34456677777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--C-ccChhhHHHHHHHHHhcCchhHHHHHHHHHHH
Q 000837 202 LAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRG--L-VPFLSCYRVFINHLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~ 277 (1262)
..+.+.- |.+.-....-.+.+...|++++|++.|++..... . +....++--+.-.++-..++++|...|..+.+
T Consensus 257 ~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 257 EEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 7776654 4333333355566666777777777777654211 0 11122233333334444555555555555544
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.75 E-value=0.36 Score=32.57 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 000837 1188 EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1188 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
.+|..++..|...|++++|+..++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777777 4554
No 273
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.67 E-value=0.32 Score=32.76 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 000837 1188 EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1188 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
..|..++..|...|++++|++.+++.++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777766 4554
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.55 E-value=9 Score=36.81 Aligned_cols=134 Identities=12% Similarity=0.036 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHH-
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFI- 256 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~- 256 (1262)
-++|.. +--|+..+..++|...|..+.+.|...=..-..........+.|+-..|+..|+++-.....|...-=..-+
T Consensus 59 gd~fla-AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLA-ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHH-HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344433 445778888899999999988877432111222344555677889999999999988776666443111222
Q ss_pred --HHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 257 --NHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMA 315 (1262)
Q Consensus 257 --~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 315 (1262)
-.|+..|.|++.....+.+-..+.. ...+.-..|.-+-.+.|++..|.+.|.++..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~---mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNP---MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCCh---hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2345667777666655544332221 2233344444445555666666665555544
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.38 E-value=0.49 Score=49.80 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=81.5
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|++.|.+.+. ..| |+.++..-+.+|.+..++..|+.=...++.++ ..=...|..-+.+-...|+..+|.+
T Consensus 110 QgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred ccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555555543 566 77788888888888888888888777777542 1124556666777777888899999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhccccccc----------c-ccchhhhhhhhcCCCcccc
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLRNSNDKDN----------N-RNSQGFLSRLLSGSGFIKF 1260 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~ 1260 (1262)
-++.+++ ++|+.-..-.-++.+.+-..++- + ..-+..|+..-+|.||++|
T Consensus 187 D~E~vL~--LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~ 247 (536)
T KOG4648|consen 187 DCETVLA--LEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKK 247 (536)
T ss_pred hHHHHHh--hCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhh
Confidence 9999888 78876655555554443221111 1 1223344445578888876
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=18 Score=38.39 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=84.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHcccCChhH
Q 000837 1059 GLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS---YDSIISTCNKLDP 1135 (1262)
Q Consensus 1059 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~~g~~~~ 1135 (1262)
.....|+..+|...|...++.... +...--.|+.+|...|+.+.|..++..+-..--...... ...++.......+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777777777764222 345556667777777777777777766543211111111 0111111333333
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 000837 1136 AMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD-TPTQEMYSSVVNRYSLENNLGKASELM 1210 (1262)
Q Consensus 1136 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~ 1210 (1262)
...+-.+.. -.| |...-..++..+...|+.++|.+.+-.++..+. .-|...-..++..+...|..+.+...+
T Consensus 222 ~~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 222 IQDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 334434443 356 677778888889999999999888877775422 223455556666666666444443333
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=23 Score=37.71 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=82.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChh
Q 000837 848 SGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVP 927 (1262)
Q Consensus 848 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 927 (1262)
......|+..+|...|+........ +......+..+|...|+.+.|..++..+-..--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777888877777764332 234455667777788888888888776544321111222222344444555555
Q ss_pred hHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHhhcCC
Q 000837 928 WALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL-LPDEVTYNFLIYGFSKHK 994 (1262)
Q Consensus 928 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g 994 (1262)
+...+-...... +.|...-..+...+...|+.++|++.+-.+.+++. --|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 544444444432 22555566677777788888888887776665532 123344455555555554
No 278
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.86 E-value=13 Score=35.48 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHh
Q 000837 182 EVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVK 261 (1262)
Q Consensus 182 ~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~ 261 (1262)
..++..+.+.+....+..+++.+...+. .++..++.++..|++. +..+.++.+.. ..+......+++.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~-~~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKY-DPQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHH-CHHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3455666666677777777777776652 3556777777777654 23444444442 0122223334555555
Q ss_pred cCchhHHHHHHHHH
Q 000837 262 MKVTHLAFRVCVDM 275 (1262)
Q Consensus 262 ~~~~~~A~~~~~~m 275 (1262)
.+.++++..+|.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.79 E-value=7.3 Score=44.25 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCC
Q 000837 1054 NAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDT-INYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNK 1132 (1262)
Q Consensus 1054 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~ 1132 (1262)
..++.--.+..+...-++.-.++++ +.||. ..|..|.. -......+|.+++++..+.|-. ..-........|.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~--~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA--SLGKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH--hhchhhhhhcccc
Confidence 3455556677788888888888887 56774 34433322 2345578888888887764310 0000000000111
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1133 LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDT-PTQEMYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
.++....+..+|-..+-..++.++.+.|+.+||++.+..+.+.... .+..+...|+..+...+.+.++..++.
T Consensus 246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1111222223343444456777777778888888888877753211 134556677777788888888877777
Q ss_pred HHH
Q 000837 1212 AMQ 1214 (1262)
Q Consensus 1212 ~~~ 1214 (1262)
+--
T Consensus 320 kYd 322 (539)
T PF04184_consen 320 KYD 322 (539)
T ss_pred Hhc
Confidence 753
No 280
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.72 E-value=3.8 Score=47.50 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=13.1
Q ss_pred hhcHHhHHHHHHhcCCHHHHHHHHHHH
Q 000837 805 LDVSVSLIPQLFRTGRLEKAVALREIS 831 (1262)
Q Consensus 805 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 831 (1262)
...|..|.+...+.|+++-|++.|.+.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344444555555555555555444443
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.64 E-value=0.27 Score=33.24 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=13.4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 000837 1148 LKP-SMNTWHVLVHKLCQEGRTTEAE 1172 (1262)
Q Consensus 1148 ~~p-~~~~~~~l~~~~~~~g~~~~A~ 1172 (1262)
+.| ++..|+.++..|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344 4555555555555555555553
No 282
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.43 E-value=52 Score=40.45 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCC-CCCChhcHHHHHHHHHh---
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKG-FNPSNRSLRSVISCLCE--- 1027 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~--- 1027 (1262)
...+.-.|.++.|++.+-+ ..+...|.+.+.+.+.-|.-.+-.+... ..+.... -.|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445667888888887766 1122334444444444332222111111 2233210 11222556667777765
Q ss_pred cCChhHHHHHHHHHHHc
Q 000837 1028 VGELGKSLELSQEMRLK 1044 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~ 1044 (1262)
..+..+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35667777777665543
No 283
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.37 E-value=6.1 Score=45.86 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=84.8
Q ss_pred HhcCCHHHHHHHHH--HHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 000837 816 FRTGRLEKAVALRE--ISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRK 893 (1262)
Q Consensus 816 ~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~ 893 (1262)
.-.++++++.++.. .+.. ..+....+.++..+.+.|..+.|+.+..+ +.+ -.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHH
Confidence 34556666554443 1111 11233356677777777777777765333 211 1222346677777
Q ss_pred HHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 894 VRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQE 973 (1262)
Q Consensus 894 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 973 (1262)
|.++.++ ..+...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7766543 23566777777777777888887777776544 56677777777887776666666665
Q ss_pred CCCCCCHhhHHHHHHHhhcCCChhHHHHHHHH
Q 000837 974 NELLPDEVTYNFLIYGFSKHKDVSSSKYYIAA 1005 (1262)
Q Consensus 974 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 1005 (1262)
.| -++....++...|++++..+++.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53 245555566666777776665543
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.35 E-value=53 Score=40.39 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=42.0
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 000837 361 IHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSR---GLNPDVHTYNSLISGMFKE 437 (1262)
Q Consensus 361 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~y~~li~~~~~~ 437 (1262)
...+.-.|.++.|.+++-+ ..+...|.+.+...+..|.-.+-.+... ..+... +..| .-+..||..|++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~--ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPP--LNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-----------------------------HHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCC--cCHHHHHHHHHHH
Confidence 3444567999999998877 2234567777776666543322222211 333222 1222 5678888888753
Q ss_pred ---CChHHHHHHHHHHHhC
Q 000837 438 ---GMSKHAKEILDEMVNR 453 (1262)
Q Consensus 438 ---g~~~~A~~l~~~m~~~ 453 (1262)
.+..+|.+.|--+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 5677777777666654
No 285
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.34 E-value=17 Score=34.65 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 000837 290 FHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEK 335 (1262)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 335 (1262)
...++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4455555555566666666666666655 35556666666666654
No 286
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.20 E-value=2 Score=44.32 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCH
Q 000837 441 KHAKEILDEMVNRGITPSLSTYRILLAGYCKARQF 475 (1262)
Q Consensus 441 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 475 (1262)
+=+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 45789999999999999999999999999777653
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.20 E-value=23 Score=36.02 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=50.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEH 1071 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 1071 (1262)
+.+++++|.+.++..++ .|...|++..|-....++-+. ++.+. .+++.|+.
T Consensus 85 kk~~~~eAv~cL~~aie---------------Iyt~~Grf~~aAk~~~~iaEi-yEsdl-------------~d~ekaI~ 135 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIE---------------IYTDMGRFTMAAKHHIEIAEI-YESDL-------------QDFEKAIA 135 (288)
T ss_pred hccChHHHHHHHHHHHH---------------HHHhhhHHHHHHhhhhhHHHH-HhhhH-------------HHHHHHHH
Confidence 44477777666665544 466677776666655544332 11111 34455555
Q ss_pred HHHHHHh--CCCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCC
Q 000837 1072 FLDQIVD--KDLVPDTINYDNL---IKRFCGYGRLDKAVDLLNIMLKKGSTP 1118 (1262)
Q Consensus 1072 ~~~~m~~--~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p 1118 (1262)
.|++.-+ +|-..+...-..+ ...-...+++.+|+++|++.....+..
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555432 1111122222222 222345678888888888877754433
No 288
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.83 E-value=1.7 Score=44.81 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=62.8
Q ss_pred CcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcH
Q 000837 944 NLIIFNILVFHLMSS-----GNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSL 1018 (1262)
Q Consensus 944 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 1018 (1262)
|-.+|-+++..+... ++.+-....++.|.+.|+.-|..+|+.|++.+-+-. +.|....-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nvfQ 129 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNVFQ 129 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHHHH
Confidence 455566666555432 445555555667777777777777777776654322 12211111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 000837 1019 RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 1019 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 1066 (1262)
... --|- .+-+=++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 130 ~~F-~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVF-LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHH-hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 000 0111 12344788899999999999999999999998877653
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.66 E-value=0.66 Score=31.87 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1189 MYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1189 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
+|..|+.+|...|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999988654
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.58 E-value=3.9 Score=40.08 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 1230 (1262)
.|..-+.++.+.+.++.|++-..++++.+ +........-..+|.+..++++|++-|+++++ ..|.....-..+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRREAREAIA 209 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34445555666666666666666666643 22233444445566666667777777777766 4565444433333
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.06 E-value=19 Score=43.64 Aligned_cols=255 Identities=11% Similarity=0.051 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHH----HH-hhcCCChhHHHHHHHHHHH-------CCCCCChhcHHHHHHHHHh
Q 000837 960 NIFHVKRVLDELQENELLPDEVTYNFLI----YG-FSKHKDVSSSKYYIAAMVS-------KGFNPSNRSLRSVISCLCE 1027 (1262)
Q Consensus 960 ~~~~A~~~~~~m~~~g~~pd~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~ 1027 (1262)
....|.+.++...+.|. ...-..+. .+ +....|++.|+.+|+.+.+ +| .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 35678888888877753 22222222 22 4566788999999998877 45 33455666777766
Q ss_pred cC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH---
Q 000837 1028 VG-----ELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSR---GKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFC--- 1096 (1262)
Q Consensus 1028 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--- 1096 (1262)
.. +.+.|..++....+.|.+ +.. ..|...+... .+...|.++|..+.+.|..+ .+-.+...|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCC
Confidence 43 556688888888877633 322 2233333222 35678888888888776543 2222332221
Q ss_pred -hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---H-h---cCC
Q 000837 1097 -GYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKL---C-Q---EGR 1167 (1262)
Q Consensus 1097 -~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~-~---~g~ 1167 (1262)
-.-+.+.|..++++.-++|..........+... .+.++.+.-.+..+...|..-....-..+.... . . ..+
T Consensus 375 gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 344678888888888887722223222222222 467777777666666544433111111111111 1 1 124
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1168 TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLE----NNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1168 ~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
.+.+..++.+... .-++.....|++.|..- .++..|...|.+.-..+ ......++.++.
T Consensus 455 ~~~~~~~~~~a~~---~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-----~~~~~nlg~~~e 517 (552)
T KOG1550|consen 455 LERAFSLYSRAAA---QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-----AQALFNLGYMHE 517 (552)
T ss_pred hhHHHHHHHHHHh---ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-----hHHHhhhhhHHh
Confidence 4556666666654 34677777777776654 34677777777776644 334444555544
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.00 E-value=39 Score=36.94 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q 000837 303 IQESRNLVRKAMAFGLEPSSLVFNE 327 (1262)
Q Consensus 303 ~~~a~~~~~~m~~~g~~~~~~~~~~ 327 (1262)
+.+...+++.|++.|+..+.++|-+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHH
Confidence 3444567777777777777766654
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.94 E-value=18 Score=35.82 Aligned_cols=96 Identities=7% Similarity=0.019 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHH--
Q 000837 390 ITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNS--LISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRIL-- 465 (1262)
Q Consensus 390 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-- 465 (1262)
..|-.++.... .+.. +.......+.........-++.+ +...++..|++++|...++..... |....+..+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 44555555543 2222 33344444444422222222322 245577888888888888877653 333444443
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHHcCC
Q 000837 466 ---LAGYCKARQFDEAKIMVSEMAKSGL 490 (1262)
Q Consensus 466 ---i~~~~~~g~~~~A~~l~~~m~~~~~ 490 (1262)
.......|++|+|+.+++.....++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w 157 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESW 157 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccH
Confidence 3456777888888888887776554
No 294
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.69 E-value=6.5 Score=36.08 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1149 KPSMNTWHVLVHKLCQEGRTT---EAERLLISMVQLGDTP--TQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1149 ~p~~~~~~~l~~~~~~~g~~~---~A~~l~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
.++..+-..+++++.+..+.+ +.+.+++...+. -.| ...+...|.-++++.|++++++.+.+.+++ .+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 567778889999998877555 677888888862 233 355556677789999999999999999999 689999
Q ss_pred hHHHHHHHhhccccccc
Q 000837 1224 THWSLISNLRNSNDKDN 1240 (1262)
Q Consensus 1224 ~~~~~l~~l~~~~~~~~ 1240 (1262)
....+=..+..+..+++
T Consensus 106 Qa~~Lk~~ied~itkeg 122 (149)
T KOG3364|consen 106 QALELKETIEDKITKEG 122 (149)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 88888888887766655
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.58 E-value=51 Score=37.70 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHH
Q 000837 629 DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVE 708 (1262)
Q Consensus 629 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 708 (1262)
|...+.+++..+..+.+..-...+-.+|+..|- +-..|..++.+|..+ ..+.-..+|+++.+..+ +......-+-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 777788899999999999999999999998764 677888999999888 67888999999888653 3333333333
Q ss_pred HHhhhCchHhHHHHHHHHHhh
Q 000837 709 CLCHKKLLKESLQLFECMLVS 729 (1262)
Q Consensus 709 ~~~~~g~~~~A~~~~~~~~~~ 729 (1262)
.+...++.+.+..+|.+++..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH
Confidence 444458888898888887653
No 296
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.54 E-value=36 Score=35.93 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCChh
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS-----GYSPDFS 1223 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~ 1223 (1262)
++...+..|..+|.+.+|.++.++.+... +.+...|..++..+...||--.|.+-++++-+. |++.++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 45667778999999999999999999863 557888899999999999988888777766542 6666665
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.37 E-value=24 Score=34.42 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC
Q 000837 756 ALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ 835 (1262)
Q Consensus 756 ~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 835 (1262)
+.++.+.+.+++++...+..+++.+.+.|++..... +...++.+|.......+-.+. +....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 445556678889999999999999999998766444 444455555554443332222 2223333332223221
Q ss_pred CCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 836 PLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRK 904 (1262)
Q Consensus 836 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 904 (1262)
=...+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+.
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0012556777888889999988888775331 2223345666666777766666666655543
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.13 E-value=46 Score=36.63 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 000837 1134 DPAMDLHAEMMARDLKPSMNTWHVLVHKLCQ----EGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLEN-------- 1201 (1262)
Q Consensus 1134 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 1201 (1262)
..|...|.++...+ ++.....++..|.. ..+.++|..+|+++.+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 46777788877654 45556666655543 3488899999999998764 44444455 566555
Q ss_pred -------CHhHHHHHHHHHHHcCCCCChhh
Q 000837 1202 -------NLGKASELMQAMQQSGYSPDFST 1224 (1262)
Q Consensus 1202 -------~~~~A~~~~~~~~~~~~~p~~~~ 1224 (1262)
+...|...+......|.......
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEA 274 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 77888888888888765554443
No 299
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.00 E-value=55 Score=37.43 Aligned_cols=178 Identities=11% Similarity=0.114 Sum_probs=107.9
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 000837 1014 SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIK 1093 (1262)
Q Consensus 1014 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 1093 (1262)
|.....+++..+...-...-+..++.+|...| .+.-.+..++..|... ..+.-..+++++.+..+. |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45555666777777777777777777777643 4566677777777766 456666777777665443 4444445555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC------CHHHHHHHHcc-cCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 000837 1094 RFCGYGRLDKAVDLLNIMLKKGSTP------NSSSYDSIIST-CNKLDPAMDLHAEMMA-RDLKPSMNTWHVLVHKLCQE 1165 (1262)
Q Consensus 1094 ~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~ll~~-~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~ 1165 (1262)
.|-+ ++.+++..+|.+.... .-| -...|..+... ..+.|.-+.+..++.+ .|..--...+..+-.-|...
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 4544 6777777777776653 112 11234444443 4456666666666654 23333344455555667788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1166 GRTTEAERLLISMVQLGDTPTQEMYSSVVNRYS 1198 (1262)
Q Consensus 1166 g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~ 1198 (1262)
.++++|++++..+.+.. ..|.++-..++..++
T Consensus 219 eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 219 ENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred cCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 89999999999888764 445555555555444
No 300
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.83 E-value=71 Score=38.52 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1087 NYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLC 1163 (1262)
Q Consensus 1087 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 1163 (1262)
+.+--+..+...|+..+|.++-.+.. -||...|..-+.+ .+++++-.++-++.. .|.-|.=++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 33334444556777777777665543 4666666555555 566666555444332 2345666777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1164 QEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1164 ~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
+.|+.++|.+.+.+.-. .+ ..+.+|...|++.+|.++--
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 88888888888777432 11 46777888888888776543
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.79 E-value=83 Score=38.22 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHHH-------CCCccChhhHHHHHHHHHhcC-----ChhhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 000837 888 ANNLRKVRELLSAMIR-------KRLSLSISSYRNLVRWMCMEG-----GVPWALNLKELMLGQNKSHNLIIFNILVFHL 955 (1262)
Q Consensus 888 ~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 955 (1262)
..+.+.|...++.+.+ .+ .+.....+..+|.+.. +.+.|..++....+.|.+ +. ...+...+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a--~~~lg~~~ 335 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DA--QYLLGVLY 335 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hH--HHHHHHHH
Confidence 3455555555555544 33 2223344444444432 344466666555554322 11 11222222
Q ss_pred Hh---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHh--hcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 000837 956 MS---SGNIFHVKRVLDELQENELLPDEVTYNFLIYGF--SKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGE 1030 (1262)
Q Consensus 956 ~~---~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 1030 (1262)
.. ..+...|.++|...-..|.. +..-+..++... .-..+...|..++.+..+.| .|....-...+..+.. ++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 22 13456677777666666532 111111111111 12235666777777766665 2222211222223333 55
Q ss_pred hhHHHHHHHHHHHcC
Q 000837 1031 LGKSLELSQEMRLKG 1045 (1262)
Q Consensus 1031 ~~~A~~~~~~~~~~g 1045 (1262)
++.+.-.+..+.+.|
T Consensus 413 ~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 413 YDTALALYLYLAELG 427 (552)
T ss_pred ccHHHHHHHHHHHhh
Confidence 555555555555543
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.95 E-value=8.2 Score=38.49 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCcc--ChhhHHHHHHHHHhcCchhHHHHHHHHHHH
Q 000837 214 NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVP--FLSCYRVFINHLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~ 277 (1262)
...+..++..|.+.|+.++|++.|.++++....+ -...+-.+++.....+++..+.....++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567789999999999999999999998865433 234556666666666777766666555533
No 303
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.65 E-value=74 Score=36.53 Aligned_cols=78 Identities=22% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHH
Q 000837 766 CNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK-NMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHS 844 (1262)
Q Consensus 766 ~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 844 (1262)
+..|+..|...+..+.+.+.+.+...+|.+|... +..|+..++.+ -.-|...-+++.|..+|..-+..++. +...|.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalflrgLR~npd-sp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALFLRGLRFNPD-SPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHHHHHhhcCCC-ChHHHH
Confidence 4458899999998888888899999999998865 34455444432 22344455589999999888877665 344443
Q ss_pred H
Q 000837 845 A 845 (1262)
Q Consensus 845 ~ 845 (1262)
.
T Consensus 179 e 179 (568)
T KOG2396|consen 179 E 179 (568)
T ss_pred H
Confidence 3
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.63 E-value=4.3 Score=39.53 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC----CH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 000837 1133 LDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQEG----RT-------TEAERLLISMVQLGDTPTQEMYSSVVNRYSLE 1200 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g----~~-------~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~ 1200 (1262)
+++|++-|++.+. ++|+ ..++.+++.+|...+ +. ++|...|+++.+ ..|+...|..-+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~--- 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA--- 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH---
Confidence 5666677777775 7884 478888888876443 33 344444455554 478877777544333
Q ss_pred CCHhHHHHHHHHHHHcCCCCC
Q 000837 1201 NNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1201 g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
.+|-++..++++.+..+.
T Consensus 124 ---~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 124 ---AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp ---HTHHHHHHHHHHSSS---
T ss_pred ---HhhHHHHHHHHHHHhhhh
Confidence 457777777777654443
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.45 E-value=1.2 Score=30.11 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1175 LISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1175 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
++++++.. +.++..|..++..|...|++++|++
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 45666642 5568999999999999999998863
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.41 E-value=72 Score=36.18 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 000837 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP---DTINYDNLIKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1050 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
..+|..++..+.+.|+++.|...+..+...+..+ .+.....-++..-..|+.++|+..++..++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666666666666666666665532111 122333334445556666666666666665
No 307
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.17 E-value=1.8 Score=29.67 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
+|..|+..|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478999999999999999999999664
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.10 E-value=1.9 Score=28.89 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
..|..++..+...|++++|++.++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999974
No 309
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.58 E-value=1.4 Score=29.54 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1189 MYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1189 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
+|..++..|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666777777666666665
No 310
>PRK09687 putative lyase; Provisional
Probab=84.40 E-value=66 Score=34.95 Aligned_cols=230 Identities=11% Similarity=0.019 Sum_probs=136.8
Q ss_pred CCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHHHH
Q 000837 978 PDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGEL----GKSLELSQEMRLKGLVHDSIVQ 1053 (1262)
Q Consensus 978 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~ 1053 (1262)
+|.......+.++...|. .++...+..+.. .++...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555556666666554 333344444443 23445555556667777653 4566666666432 3566666
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHc
Q 000837 1054 NAIAEGLLSRGKL-----QEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIS 1128 (1262)
Q Consensus 1054 ~~l~~~~~~~g~~-----~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 1128 (1262)
...+.++...+.. ..+...+..+.. .++..+-...+.++.+.++ ++|+..+-.+++. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6666666655421 233444444333 2355566667777777776 5677777777763 33332222222
Q ss_pred ccCC----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 000837 1129 TCNK----LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLG 1204 (1262)
Q Consensus 1129 ~~g~----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 1204 (1262)
+.|+ ..++...+..+.. .++..+-...+.++.+.|+ .+|...+-+..+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 2332 4467777777763 5677777888888888887 56777777776542 2 345677888888984
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 000837 1205 KASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1205 ~A~~~~~~~~~~~~~p~~~~~~~~l~~l 1232 (1262)
+|+..++.+.+. .||.......+..|
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 799999999873 55666554444443
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.95 E-value=2.3 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
.+|..++.+|...|++++|+..++++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999984
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.66 E-value=9.7 Score=40.60 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCccCHHHHHH
Q 000837 390 ITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVN-----RGITPSLSTYRI 464 (1262)
Q Consensus 390 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~~ 464 (1262)
.++..++..+...|+.+.+.+.++++....+. +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45667777777777777777777777777533 667777788888888887777777776665 588888777666
Q ss_pred HHHH
Q 000837 465 LLAG 468 (1262)
Q Consensus 465 li~~ 468 (1262)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 313
>PRK09687 putative lyase; Provisional
Probab=83.54 E-value=72 Score=34.68 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVD 1078 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~ 1078 (1262)
..+.++...|.. +|...+.++.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444444443 34555555443
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.26 E-value=21 Score=36.87 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 000837 1152 MNTWHVLVHKLCQEGRTT-------EAERLLISMVQLGDTP-----TQEMYSSVVNRYSLENNLGKASELMQAMQQSGYS 1219 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~-------~A~~l~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 1219 (1262)
...+-.++|.|...|+-+ .|.+.|.++.+....| ...+...++....+.|+.++|.+.+.+++..+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 355667777777777744 3555555555433232 2455667788888888888888888888886555
Q ss_pred CChhhHHHHHHHh
Q 000837 1220 PDFSTHWSLISNL 1232 (1262)
Q Consensus 1220 p~~~~~~~~l~~l 1232 (1262)
+.++.......++
T Consensus 198 s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 198 SKEPKLKDMARDQ 210 (214)
T ss_pred CCcHHHHHHHHHH
Confidence 5544344444433
No 315
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.19 E-value=14 Score=43.62 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=64.2
Q ss_pred hcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHc-----c-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 1097 GYGRLDKAVDLLNIMLKK--GSTPNSSSYDSIIS-----T-----CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQ 1164 (1262)
Q Consensus 1097 ~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~-----~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 1164 (1262)
+.|+-++|+...-.|.++ ...||.+....-|. . .+..+.|.+.|++..+ ..|+...=..++..+..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 455666666666555554 33455443211111 1 4456666777777665 55644333333333444
Q ss_pred cC-CHHHHHHHHHHHH-------HCCCCCC-HHHHH--HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 000837 1165 EG-RTTEAERLLISMV-------QLGDTPT-QEMYS--SVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1165 ~g-~~~~A~~l~~~~~-------~~~~~p~-~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~ 1233 (1262)
.| .++...++-+-.. +.|.-.. ...|. .+..+-...+|+.+|++.-+.|.+ ++|-.+-..+.+.++.
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK--Lk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK--LKPPVWYLKSTMENIL 410 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc--cCCceehHHHHHHHHH
Confidence 44 2222222211111 1111111 22222 233445567888888888888877 5666555555555543
No 316
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.89 E-value=2 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC
Q 000837 1192 SVVNRYSLENNLGKASELMQAMQQSG 1217 (1262)
Q Consensus 1192 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 1217 (1262)
.|..+|...|+.+.|.++++.+++.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 45666666777777777776666543
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.68 E-value=18 Score=38.37 Aligned_cols=101 Identities=6% Similarity=0.074 Sum_probs=61.6
Q ss_pred CCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC-----CCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 000837 800 NMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ-----PLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLE 874 (1262)
Q Consensus 800 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 874 (1262)
|......+...++.......++++++..+-++.... +..+.++|..++ -.-++++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 444444555555555556667777777666654331 111223332222 22356677777777777777778
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 875 DEVYNMLIQGHCEANNLRKVRELLSAMIRK 904 (1262)
Q Consensus 875 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 904 (1262)
.++++.+++.+.+.+++.+|..+...|+.+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888887877777777777766654
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.33 E-value=49 Score=31.93 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=39.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 000837 190 RVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRG 244 (1262)
Q Consensus 190 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 244 (1262)
+.+..++++.++..+.-.. |..++.-..-...+...|++.+|+.+|+.+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 5567888888888877665 5555655566667888888888888888887654
No 319
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.05 E-value=33 Score=33.06 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=41.5
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCChhcHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000837 991 SKHKDVSSSKYYIAAMVSKGFNPSNRSLRS-VISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEA 1069 (1262)
Q Consensus 991 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 1069 (1262)
.+.++.+++..++..+.- ++|....... -...+...|++++|+.+|+++.+.+ |....-..|+..|....+-..-
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 345566666666666665 3444332222 1224556667777777777665542 3333333444444433333333
Q ss_pred HHHHHHHHhC
Q 000837 1070 EHFLDQIVDK 1079 (1262)
Q Consensus 1070 ~~~~~~m~~~ 1079 (1262)
...-+++.+.
T Consensus 97 r~~A~evle~ 106 (160)
T PF09613_consen 97 RRYADEVLES 106 (160)
T ss_pred HHHHHHHHhc
Confidence 3344444443
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.50 E-value=1.5e+02 Score=36.22 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=37.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc
Q 000837 396 IGWTCREGNLRSALVFFSEILSRGLNP---DVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKA 472 (1262)
Q Consensus 396 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 472 (1262)
|+++.+.+.+++|+..-+... |..| -.......|..+...|++++|-...-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 566666666666665444322 2232 1234455555566666666666655555543 444444444444444
Q ss_pred CC
Q 000837 473 RQ 474 (1262)
Q Consensus 473 g~ 474 (1262)
++
T Consensus 437 ~~ 438 (846)
T KOG2066|consen 437 DQ 438 (846)
T ss_pred cc
Confidence 43
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.46 E-value=1.1e+02 Score=34.67 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 000837 947 IFNILVFHLMSSGNIFHVKRVLDELQENELLP---DEVTYNFLIYGFSKHKDVSSSKYYIAAMVS 1008 (1262)
Q Consensus 947 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 1008 (1262)
+|..++..+.+.|+++.|...+..+...+... +......-...+-..|+..+|+..++..+.
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555554432111 111222222333344555555555555444
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.89 E-value=9.4 Score=40.70 Aligned_cols=60 Identities=13% Similarity=-0.030 Sum_probs=48.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 219 NLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
.-+..|.++|++++|+++|.......+. +.++|..-..+|.+..+|..|+.-...++..+
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD 161 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 3455788999999999999987766432 77888888899999999999988888776644
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.86 E-value=4.2 Score=30.80 Aligned_cols=42 Identities=17% Similarity=0.053 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 000837 1190 YSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1190 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~ 1233 (1262)
...+.-++.+.|++++|....+.+++ .+|++.....+-..+-
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHHH
Confidence 34456667788888888888888877 5777776665555443
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.85 E-value=34 Score=33.94 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhc
Q 000837 1025 LCEVGELGKSLELSQEMRLKGLVHD-----SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGY 1098 (1262)
Q Consensus 1025 ~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 1098 (1262)
+.+.|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.-..+.++ +.|+ .....--..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhh
Confidence 34455555555555555443 1111 23344444555666666666666666665 3332 22222223456666
Q ss_pred CChHHHHHHHHHHHhC
Q 000837 1099 GRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1099 g~~~~A~~~~~~~~~~ 1114 (1262)
..+++|++-|+++++.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6777777777776664
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.87 E-value=35 Score=36.38 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=61.1
Q ss_pred CCCcccHHHHHHHHHhhCChhHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 000837 351 TPDVLAGNRIIHTLCSIFGSKRADLFVQELEHS---GFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTY 427 (1262)
Q Consensus 351 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y 427 (1262)
+....+-..++..-....+++.+..++-+++.. ...|+...| +++. ++-.-+.++++.++..=+..|+-||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchhhH
Confidence 334445555555555566677777776666643 122222222 2222 23344566777777666677777777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 428 NSLISGMFKEGMSKHAKEILDEMVNR 453 (1262)
Q Consensus 428 ~~li~~~~~~g~~~~A~~l~~~m~~~ 453 (1262)
+.+|+.+.+.+++.+|..+.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777776666654
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.86 E-value=1.8e+02 Score=36.23 Aligned_cols=222 Identities=10% Similarity=-0.022 Sum_probs=127.1
Q ss_pred HhcCchhHHHHHHHHHHHcCCCCCCCCcc-------hHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 000837 260 VKMKVTHLAFRVCVDMVVMGNNLTDLEKD-------SFHDVV-RLLCRDRKIQESRNLVRKAMAF----GLEPSSLVFNE 327 (1262)
Q Consensus 260 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~ 327 (1262)
....++++|..+..++...-.. |+.. .++.+- .+....|+++.|..+.+..... -..+....+.+
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~---~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKA---PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCc---CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 4467888898888887665443 2221 233332 2234578999999888887763 23345666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHc---CCCCCcccHHH-----HHHHHHhhCChh--HHHHHHHHHHHC--CCCC----CHHh
Q 000837 328 VAYGYCEKKDFEDLLSFFTEM---KCTPDVLAGNR-----IIHTLCSIFGSK--RADLFVQELEHS--GFRP----DEIT 391 (1262)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~-----li~~~~~~g~~~--~A~~~~~~m~~~--g~~p----~~~t 391 (1262)
+..+..-.|++++|..+.... -..-|+..+.. -...+-..|... +.+..|...... .-+| -.-+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 778888889999998877765 22334433322 233345567333 333333333221 1111 1234
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCcc----CHHHHHH
Q 000837 392 FGILIGWTCR-EGNLRSALVFFSEILSRGLNPDVHTYN--SLISGMFKEGMSKHAKEILDEMVNRGITP----SLSTYRI 464 (1262)
Q Consensus 392 y~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~y~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~~~~~ 464 (1262)
+..+..++.+ .+...+|...+.--......|-...+. .|+..+...|++++|...++++......+ +..+-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4555555544 333444444444444444455444444 67888889999999999999988753333 2222222
Q ss_pred HHHH--HHHcCCHHHHHHHHHH
Q 000837 465 LLAG--YCKARQFDEAKIMVSE 484 (1262)
Q Consensus 465 li~~--~~~~g~~~~A~~l~~~ 484 (1262)
.++. ....|+..+|...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3332 3445777777766655
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.33 E-value=25 Score=35.14 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 000837 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD--TINYDNLIKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1050 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
...+..+++-|++.|+.++|.+.|.++.+....|. ...+-.++......+++..+...+.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777888888888888888888777654444 44566777777778888887777766654
No 328
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.92 E-value=2e+02 Score=36.35 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=15.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 000837 843 HSAFISGFCVTGKAEEASKLFRDMLS 868 (1262)
Q Consensus 843 ~~~li~~~~~~g~~~~A~~~~~~m~~ 868 (1262)
|..|+..|...|+.++|++++.++.+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45556666666666666666666554
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.67 E-value=66 Score=30.57 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHH---HcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 000837 178 PRSCEVMALMLI---RVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGL 245 (1262)
Q Consensus 178 ~~~~~~l~~~l~---~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 245 (1262)
..+...|+.++. ...++++++.+++.|.-.. |..++.-..-+..+...|++.+|+++|+++.+.+.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 344444444443 4688888888888887665 44555555566678888999999999998887753
No 330
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.64 E-value=87 Score=32.96 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCChhh
Q 000837 1156 HVLVHKLCQEGRTTEAERLLISMVQ----LGDTPT---QEMYSSVVNRYSLENNLGKASELMQAMQQS----GYSPDFST 1224 (1262)
Q Consensus 1156 ~~l~~~~~~~g~~~~A~~l~~~~~~----~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~ 1224 (1262)
..++..+.+.|.+.+|+.+++.... ..-+|+ ...+. ..+|....+..++..-+..+.-. =++|....
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllE--SKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa 206 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLE--SKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQA 206 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhh--HHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHH
Confidence 4577788899999999888776652 333443 22222 34455555555555444433221 24455555
Q ss_pred HHHHHHHhhcccccccccc
Q 000837 1225 HWSLISNLRNSNDKDNNRN 1243 (1262)
Q Consensus 1225 ~~~~l~~l~~~~~~~~~~~ 1243 (1262)
-..+++.++.+.+++..+.
T Consensus 207 ~lDL~sGIlhcdd~dyktA 225 (421)
T COG5159 207 QLDLLSGILHCDDRDYKTA 225 (421)
T ss_pred HHHHhccceeeccccchhH
Confidence 6778888888888887743
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.63 E-value=3.2e+02 Score=38.39 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 000837 1152 MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
..+|-..++....+|.++.|-..+-.+.+.. -+.++...++.++..|+...|+.+++..++. ..|+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~-~~~~ 1735 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK-NFPD 1735 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh-hccc
Confidence 4789999999999999999999888888743 4566677888999999999999999999975 3444
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.83 E-value=50 Score=31.35 Aligned_cols=66 Identities=6% Similarity=0.117 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 000837 300 DRKIQESRNLVRKAMAFGL-EPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSI 367 (1262)
Q Consensus 300 ~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~ 367 (1262)
.++.++++.+++.|.-... .+...++-.. .+...|++++|.++|+++...+....|..-+.++|-.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4555555555555544321 1122233222 3355666666666666663333333444444444443
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.55 E-value=6.1 Score=27.84 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
.+++.++..|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666654
No 334
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.33 E-value=1.2e+02 Score=32.47 Aligned_cols=132 Identities=15% Similarity=0.220 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHhh-cCCCCCHhhHHHHHHHHHh-cC-CHhhHHHHHHHHHhc-CCCCCcccHHHHHHHHhhhCchHhHH
Q 000837 645 LVRDGKKIFDGMLQ-RGLTIENESYTTLLMSLCK-KG-FIKDLHAFWDIAQNR-KWLPGLEDCKSLVECLCHKKLLKESL 720 (1262)
Q Consensus 645 ~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 720 (1262)
.+.+|+.+|+..-- ..+--|...-..+++.... .+ ....-.++.+-+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666663211 1233355555556655554 11 222223333333322 34567777778888888888888888
Q ss_pred HHHHHHHhh-cCCCChhHHHHHHHHHHhcCCcccHHHHHHH-----HHhcCCCCChhhHHHH
Q 000837 721 QLFECMLVS-CPCLRSDICYIFLEKLCVTGFSSNAHALVEE-----LLQQGCNLDQMAYSHL 776 (1262)
Q Consensus 721 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~-----~~~~g~~~d~~~~~~l 776 (1262)
++++..... .|..+...|..++.....+|+.....+++++ +.+.++..+...-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 888777664 6777777777777777777777666666654 3344444444443333
No 335
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=75.31 E-value=86 Score=30.73 Aligned_cols=131 Identities=12% Similarity=0.219 Sum_probs=78.9
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc-cCC----hhHHHHHHHHHHH
Q 000837 1071 HFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST-CNK----LDPAMDLHAEMMA 1145 (1262)
Q Consensus 1071 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~g~----~~~A~~~~~~~~~ 1145 (1262)
+++..+.+.++.|+...+..++..+.+.|+... +..++..++-||.......+-. .+. ..-|+++++++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 444555556666666677777777777766443 3344455555555554444433 222 3345555555541
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 000837 1146 RDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSG 1217 (1262)
Q Consensus 1146 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 1217 (1262)
.+..+++.+...|++-+|.+...+..... .+++ ..+..+..+.+|..--..+++-..+++
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 46788888999999999999998863321 2222 334556667777776666666666643
No 336
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.20 E-value=1.6e+02 Score=33.76 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=105.7
Q ss_pred HhcCCHHHHHHHHHHHHhC-CCCCC--H------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH----H
Q 000837 1061 LSRGKLQEAEHFLDQIVDK-DLVPD--T------INYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSI----I 1127 (1262)
Q Consensus 1061 ~~~g~~~~A~~~~~~m~~~-~~~p~--~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----l 1127 (1262)
.-.|++.+|++-+.+|.+- .-.|. . .....+..-++..+.++.|..-|....+.--.-|.-.+..+ .
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 3468999999988888752 11232 1 12222334456788889998888877764222222211111 1
Q ss_pred cc-cCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHH
Q 000837 1128 ST-CNKLDPAMDLHAEMMARDLKP------SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-----QEMYSSVVN 1195 (1262)
Q Consensus 1128 ~~-~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-----~~~~~~l~~ 1195 (1262)
.. .|+-+.-.++++.+--.+..+ ....+...+-....++++.||...+.+-.+..-..| .-...-|+.
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 11 444444444444332111111 023344444456788999999999988876431222 233345677
Q ss_pred HHHhcCCHhHHHHHHHHHHH-cCCCCChhh---HHHHHHHhhcccccccccc
Q 000837 1196 RYSLENNLGKASELMQAMQQ-SGYSPDFST---HWSLISNLRNSNDKDNNRN 1243 (1262)
Q Consensus 1196 ~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~---~~~~l~~l~~~~~~~~~~~ 1243 (1262)
.....|+..++.+......+ ..--||..+ ...++..++++.|.++..+
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~ 545 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEM 545 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhH
Confidence 78888999998887775554 233466555 3567889999888876643
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.53 E-value=6.6 Score=27.68 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1187 QEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1187 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
..++..++..|...|++++|..+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999998873
No 338
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.45 E-value=1.4e+02 Score=32.74 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=26.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCCC
Q 000837 1131 NKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEG---------------RTTEAERLLISMVQLGDT 1184 (1262)
Q Consensus 1131 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~l~~~~~~~~~~ 1184 (1262)
.+.++|...|++..+.|- ......+. .+...| +...|...+......+..
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 345666666666665443 33333444 444444 555666666666655433
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.04 E-value=4.8 Score=26.54 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1190 YSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1190 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
+..++.++...|++++|.+.++++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666677777777777777666
No 340
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=73.72 E-value=2.4e+02 Score=35.09 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.8
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHhh
Q 000837 809 VSLIPQLFRTGRLEKAVALREISLK 833 (1262)
Q Consensus 809 ~~li~~~~~~g~~~~A~~~~~~~~~ 833 (1262)
-.++..+.++|+.+.|.+++.+...
T Consensus 329 W~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 329 WPLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 3466778899999999999887654
No 341
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.52 E-value=30 Score=30.01 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHH
Q 000837 302 KIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELE 381 (1262)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 381 (1262)
..++|.-+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+ +.||...|-.|.. .+.|-.+++..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-CYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-CCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345555555555443311 1111112234445555555555555544 2444444444432 23344444444444444
Q ss_pred HCC
Q 000837 382 HSG 384 (1262)
Q Consensus 382 ~~g 384 (1262)
.+|
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 444
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.17 E-value=43 Score=39.03 Aligned_cols=133 Identities=14% Similarity=0.043 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 000837 323 LVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCRE 402 (1262)
Q Consensus 323 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 402 (1262)
...+.+++.+.+.|..++|+++ .+|....- ....+.|+++.|.++..+. -+..-|..|.++..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~------s~D~d~rF---elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL------STDPDQRF---ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc------CCChhhhh---hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhc
Confidence 3445566666666666666543 22222221 2234556667776665443 2455677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000837 403 GNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMV 482 (1262)
Q Consensus 403 g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 482 (1262)
|++..|.+.|..... |..|+-.+...|+-+.-..+-....+.|.. | .+|. +|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-~AF~----~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-LAFL----AYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-hHHH----HHHHcCCHHHHHHHH
Confidence 777777777765432 334444555556655555555555555432 2 2222 344567777777766
Q ss_pred HHH
Q 000837 483 SEM 485 (1262)
Q Consensus 483 ~~m 485 (1262)
.+-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 543
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.31 E-value=33 Score=29.72 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 000837 361 IHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNS 429 (1262)
Q Consensus 361 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 429 (1262)
+..+...|++++|..+.+.+ +.||...|-+|-.+ +.|-.+++...+.+|..+| .|....|.+
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 45677889999999888766 57999988877665 6788888888888888887 455555443
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.63 E-value=33 Score=34.42 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1133 LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL---GDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
-++|...|-++...+.--++.....|+.-|. ..+.+.|++++.++++. +-.+|+..+..|+..|.+.|+++.|.-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 4567777766665444456777777766665 56889999999999874 225679999999999999999998853
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.61 E-value=6.8 Score=25.80 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
.+..++.++.+.|++++|.+.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667889999999999999999999874
No 346
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.10 E-value=2.2e+02 Score=32.73 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGD-TPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
..+..|+.+++-+|++++|..++..+...=. ..++.........-.+.|+.+.|...+++-+-
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 3567889999999999999999966654211 11222222223334578999999888887654
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.77 E-value=26 Score=35.28 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=61.5
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHhHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLG--DTPTQEMYSSVVNRYSLENNLGKA 1206 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 1206 (1262)
.+.+.+|+.+.+.-++ .+| +...-..+...||-.|+++.|..-++...+.. ..+-..+|.+++..
T Consensus 14 ~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~---------- 81 (273)
T COG4455 14 DNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC---------- 81 (273)
T ss_pred hccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH----------
Confidence 5778899988887776 566 56667888899999999999999888887642 12235666665532
Q ss_pred HHHHHHHHHcCCCC------ChhhHHHHHHHhhccc
Q 000837 1207 SELMQAMQQSGYSP------DFSTHWSLISNLRNSN 1236 (1262)
Q Consensus 1207 ~~~~~~~~~~~~~p------~~~~~~~~l~~l~~~~ 1236 (1262)
........+-+..| .++-...+++++.-..
T Consensus 82 ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~ 117 (273)
T COG4455 82 EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHS 117 (273)
T ss_pred HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhccc
Confidence 22333344444444 3444556666665533
No 348
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.10 E-value=85 Score=27.57 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1170 EAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1170 ~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
+..+-++.+....+-|++.+....+++|++.+|+.-|+.+++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55566666666666777777777777777777777777777776664
No 349
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.98 E-value=1.8e+02 Score=35.59 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=23.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHH
Q 000837 874 EDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKE 934 (1262)
Q Consensus 874 d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 934 (1262)
+.....-++..|.+.|-.+.+.++.+.+-.+-. ...-|..-+..+.+.|+.+....+..
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 444455566666666666666666665543311 12234444444555555544443333
No 350
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.55 E-value=14 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
.+|..++..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999999873
No 351
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.72 E-value=1.8e+02 Score=30.44 Aligned_cols=191 Identities=14% Similarity=0.175 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhhhhcCCC---ChHHHHHHHHHHHccCChHHHHHHHHHHhhc---CC--CCCHhhHHHHHHHHHhcCCHh
Q 000837 611 IKACTGLLEKMPKLANKL---DQESLNLLIQACCKKGLVRDGKKIFDGMLQR---GL--TIENESYTTLLMSLCKKGFIK 682 (1262)
Q Consensus 611 ~~~a~~l~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~~~~~li~~~~~~g~~~ 682 (1262)
.++|..-|+++.+..+.- .-.++-.+|..+.+.|++++..+.+.+++-. .+ .-+..+.+++++......+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 555555555555443322 2233344566778888888888888877421 11 123445667776666555554
Q ss_pred hHHHHHHHHHh----c-CCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHH
Q 000837 683 DLHAFWDIAQN----R-KWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHAL 757 (1262)
Q Consensus 683 ~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~ 757 (1262)
-...+++.-.+ . +-+.-..|-+.+...|...+.+.+-.+++.++..++...+. +.-
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG----------------edD--- 183 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG----------------EDD--- 183 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC----------------chh---
Confidence 44444432221 1 11112234455666677777777776666666543322110 000
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhcHHhHHHHH-----HhcCCHHHHHH
Q 000837 758 VEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK-NMAPCLDVSVSLIPQL-----FRTGRLEKAVA 826 (1262)
Q Consensus 758 l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~-----~~~g~~~~A~~ 826 (1262)
...|. -=...|..-|..|....+-.+...++++.... ...|.+.. .-.|+-| .+.|++++|..
T Consensus 184 ----~kKGt-QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 184 ----QKKGT-QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred ----hhccc-hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHh
Confidence 00110 01234555677777777777777777766532 22233222 2233333 46678887753
No 352
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=64.57 E-value=3.4e+02 Score=33.24 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc
Q 000837 1098 YGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST 1129 (1262)
Q Consensus 1098 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 1129 (1262)
.|+..+|.+.+-.+++.+..|.......+...
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp --------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 46666666666666666666665554444444
No 353
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.49 E-value=3.6e+02 Score=33.49 Aligned_cols=116 Identities=12% Similarity=0.126 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHHC-CCCCChh--cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 000837 994 KDVSSSKYYIAAMVSK-GFNPSNR--SLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAE 1070 (1262)
Q Consensus 994 g~~~~A~~~~~~m~~~-g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 1070 (1262)
.+.+.|..++...... ++.+... ....+.......+..++|...+....... .+.....--+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 4556677777665442 2222211 12222222222222455555555543321 12222333333334667777777
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1071 HFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1071 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
..+..|.... .-...-..-+..++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777765421 1133444556666666777777777777763
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.25 E-value=1.5e+02 Score=34.92 Aligned_cols=149 Identities=15% Similarity=0.046 Sum_probs=86.8
Q ss_pred hcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 000837 817 RTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRE 896 (1262)
Q Consensus 817 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~ 896 (1262)
-.|+++.|..++..+. ....+.++..+.+.|-.++|+++ .+|+.-- .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 3455555555444332 22345566667777777776653 3333221 112246777777777
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000837 897 LLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL 976 (1262)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 976 (1262)
+..+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 76543 2556677777777777888888777766544 45566666666776655555555554442
Q ss_pred CCCHhhHHHHHHHhhcCCChhHHHHHHHH
Q 000837 977 LPDEVTYNFLIYGFSKHKDVSSSKYYIAA 1005 (1262)
Q Consensus 977 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 1005 (1262)
.|....+|...|+++++.+++..
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHh
Confidence 23344456667777777766544
No 355
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.62 E-value=42 Score=38.93 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=44.4
Q ss_pred cCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP--SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
.|+.-.|.+.+..... ..| .....-.|+..+.+.|...+|-+++.+.+... ...+-++..++++|....+.++|+
T Consensus 620 ~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4555555555544443 233 22234455555555555556666666555543 344555555666666666666666
Q ss_pred HHHHHHHH
Q 000837 1208 ELMQAMQQ 1215 (1262)
Q Consensus 1208 ~~~~~~~~ 1215 (1262)
+.++.+.+
T Consensus 697 ~~~~~a~~ 704 (886)
T KOG4507|consen 697 EAFRQALK 704 (886)
T ss_pred HHHHHHHh
Confidence 66665555
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.28 E-value=88 Score=32.25 Aligned_cols=83 Identities=11% Similarity=-0.020 Sum_probs=43.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChH
Q 000837 1025 LCEVGELGKSLELSQEMRLKGLVHDSI-VQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLD 1102 (1262)
Q Consensus 1025 ~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 1102 (1262)
|....+++.|+.-+.+.+. +.|+.. -|..=+-.+.+..+++.+..--.+.++ +.|| ......+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4444556666665555544 344442 233344445555666665555555554 4454 233444455555556666
Q ss_pred HHHHHHHHH
Q 000837 1103 KAVDLLNIM 1111 (1262)
Q Consensus 1103 ~A~~~~~~~ 1111 (1262)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666555
No 357
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.27 E-value=2.9e+02 Score=32.05 Aligned_cols=91 Identities=10% Similarity=0.033 Sum_probs=66.7
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHH
Q 000837 160 LWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGD-VERAVLVFD 238 (1262)
Q Consensus 160 a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 238 (1262)
-..+|+.+-.. |.+++..+...+...-+.+.+.++..++..|.... |.++.+|..-..-....+. ++.|..+|.
T Consensus 90 Iv~lyr~at~r---f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 90 IVFLYRRATNR---FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHh---cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 35677777543 77899999988888888888999999999999876 6678888755544444444 888899998
Q ss_pred HhhhCCCccChhhHHHHH
Q 000837 239 QMRGRGLVPFLSCYRVFI 256 (1262)
Q Consensus 239 ~m~~~~~~p~~~~~~~l~ 256 (1262)
+..+.++. ++..|-...
T Consensus 165 rgLR~npd-sp~Lw~eyf 181 (568)
T KOG2396|consen 165 RGLRFNPD-SPKLWKEYF 181 (568)
T ss_pred HHhhcCCC-ChHHHHHHH
Confidence 88877654 444444333
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.81 E-value=63 Score=32.56 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 000837 266 HLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAF---GLEPSSLVFNEVAYGYCEKKDFEDLL 342 (1262)
Q Consensus 266 ~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~ 342 (1262)
+.|++.|-++...+.- +....-.-+..|....+.+.+.+++-+..+. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l----~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL----ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC----CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4555555555443321 2222222233333355566666666665552 22567778888888888888877764
No 359
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.62 E-value=1.5e+02 Score=32.11 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhH
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMV----QLGDTPTQEMYS-SVVNRYSLENNLGKASELMQAMQQSGYSPDFSTH 1225 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~----~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 1225 (1262)
-...+-..+.-||+.|+-+.|.+.+.+.. ..|.+-|.-.+. .++-.|....-..+-++..+.+.+.|.+=+-.--
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 35667788888999999999988877655 356666755544 5565666666667777778888887765444334
Q ss_pred HHHHHHhhccccccccccchhhhhhhhcC
Q 000837 1226 WSLISNLRNSNDKDNNRNSQGFLSRLLSG 1254 (1262)
Q Consensus 1226 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 1254 (1262)
+.....+|...-++=. .|..++...+|+
T Consensus 183 lKvY~Gly~msvR~Fk-~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFK-EAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhHH-HHHHHHHHHccc
Confidence 4444444443222222 344445555544
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.36 E-value=2.2e+02 Score=30.42 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1053 QNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1053 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
.+.....|..+|.+.+|.++-+..+.. .| +...+..|+..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344445566666666666666666552 22 34555556666666666555555555543
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=62.28 E-value=9.9 Score=23.70 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=9.1
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 000837 1157 VLVHKLCQEGRTTEAERLL 1175 (1262)
Q Consensus 1157 ~l~~~~~~~g~~~~A~~l~ 1175 (1262)
.++.++...|+.++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 4444444455555554444
No 362
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.42 E-value=10 Score=23.65 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1189 MYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1189 ~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999999876
No 363
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.34 E-value=3.9e+02 Score=32.90 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC---ChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhc
Q 000837 777 IRGLCKEKKFSVAFKMLDSMLDKNMAP---CLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVT 853 (1262)
Q Consensus 777 i~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 853 (1262)
++-+.+.+.+++|+.+.+.... ..| -.......|..+.-.|++++|-...-.|... +...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3445556666777666555432 222 2334555666666677777776666665533 344444444444444
Q ss_pred CCH
Q 000837 854 GKA 856 (1262)
Q Consensus 854 g~~ 856 (1262)
++.
T Consensus 437 ~~l 439 (846)
T KOG2066|consen 437 DQL 439 (846)
T ss_pred ccc
Confidence 443
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.76 E-value=12 Score=23.67 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1190 YSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1190 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
|..++..+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34445555555555555555555444
No 365
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=60.11 E-value=99 Score=27.20 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000837 1033 KSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVD 1078 (1262)
Q Consensus 1033 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 1078 (1262)
+..+-++.+....+-|++.+..+.+.+|.+.+++..|..+|+....
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555555566666666666666666666666666666654
No 366
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=60.05 E-value=4.9e+02 Score=33.67 Aligned_cols=400 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred ccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 000837 701 EDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGL 780 (1262)
Q Consensus 701 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~ 780 (1262)
+.+..+=+++...+.++.|+..|+++..+.|. +.-..-..+.....+++...+.|-+.+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 534 (932)
T PRK13184 476 VSCLAVPDAFLAEKLYDQALIFYRRIRESFPG----------RKEGYEAQFRLGITLLEKASEQGDPRD----------- 534 (932)
T ss_pred eecccCcHHHHhhHHHHHHHHHHHHHhhcCCC----------cccchHHHHHhhHHHHHHHHhcCChHH-----------
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHH
Q 000837 781 CKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEAS 860 (1262)
Q Consensus 781 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 860 (1262)
+++|+.-|+.+ +|...-+--|.--.-+|-+.|++++-++.+....++.+..... ..--.
T Consensus 535 -----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 593 (932)
T PRK13184 535 -----FTQALSEFSYL--HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI--------------SRLRD 593 (932)
T ss_pred -----HHHHHHHHHHh--cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc--------------HHHHH
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 000837 861 KLFRDMLSQGMLLEDEVYNMLIQGHCEANN---LRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELML 937 (1262)
Q Consensus 861 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 937 (1262)
.+..+|.+.-......+|.-++-+...... ..+-+.+|+.+..+ ..|....+-...-.-.+..+++--+..+.
T Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 669 (932)
T PRK13184 594 HLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHK-QQATLFCQLDKTPLQFRSSKMELFLSFWS--- 669 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhh-ccCCceeeccCchhhhhhhhHHHHHHHHh---
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHH--CCCCCCh
Q 000837 938 GQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVS--KGFNPSN 1015 (1262)
Q Consensus 938 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~ 1015 (1262)
|..---.++|+...+. +|..+..-...+.+..|.++-+.+..+.+.+ ..+....
T Consensus 670 ---------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (932)
T PRK13184 670 ---------------------GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTE 725 (932)
T ss_pred ---------------------cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchH
Q ss_pred hc----------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 000837 1016 RS----------LRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD- 1084 (1262)
Q Consensus 1016 ~~----------~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~- 1084 (1262)
.. |-.-+.++.....++++.+.+..+...-+ ...+..++.-..-.++.+.-..+.+.+...-....
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (932)
T PRK13184 726 SIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLI---LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEER 802 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHH---HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhh
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 1085 -TINYDNLIKRFCGYGRLDKAVDLLNIMLK----KGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLV 1159 (1262)
Q Consensus 1085 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 1159 (1262)
......-+.+|.-..++.+|.++++..-. ....+-.+-|.+.+...++.+-|...|....+...-|. ...+
T Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 878 (932)
T PRK13184 803 HDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFPR----SLDG 878 (932)
T ss_pred hhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCcc----hhhc
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 000837 1160 HKLCQEGRTTEAERLLIS 1177 (1262)
Q Consensus 1160 ~~~~~~g~~~~A~~l~~~ 1177 (1262)
..+...|..++...++++
T Consensus 879 ~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 879 DIFDYLGKISDNLSWWEK 896 (932)
T ss_pred cccchhccccccccHHHH
No 367
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.88 E-value=4.7e+02 Score=33.34 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcC---CCCCHhhHHHHHHHHHhcCCH--hhHH
Q 000837 611 IKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRG---LTIENESYTTLLMSLCKKGFI--KDLH 685 (1262)
Q Consensus 611 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~--~~A~ 685 (1262)
+++....+.+. .-|..|+.-|...|+.++|++++.+....- -.--...+..++..+.+.+.. +-++
T Consensus 494 vee~e~~L~k~---------~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~ 564 (877)
T KOG2063|consen 494 VEEIETVLKKS---------KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLIL 564 (877)
T ss_pred hHHHHHHHHhc---------ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHH
Confidence 55555555443 236778888999999999999998887631 111122344456655555554 4444
Q ss_pred HHHHHHH
Q 000837 686 AFWDIAQ 692 (1262)
Q Consensus 686 ~~~~~m~ 692 (1262)
+.-....
T Consensus 565 ~y~~wvl 571 (877)
T KOG2063|consen 565 EYADWVL 571 (877)
T ss_pred HHhhhhh
Confidence 4433333
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.78 E-value=2.1e+02 Score=29.24 Aligned_cols=72 Identities=26% Similarity=0.316 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHcc
Q 000837 1056 IAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKK--GSTPNSSSYDSIIST 1129 (1262)
Q Consensus 1056 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~ 1129 (1262)
-+..+.+.+...+|+...++-.+. +| |...-..|+..|+-.|+|++|..-++..-+. ...+....|..++.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344555566666666666655543 23 3455556666666777777766666555442 223333444444433
No 369
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=59.44 E-value=2.7e+02 Score=30.36 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHcc-cCC---hhHHHHHHHHHHHCCCCCCH-HHHHH
Q 000837 1087 NYDNLIKRFCGYGRLDKAVDLLNIMLKK----GSTPNSSSYDSIIST-CNK---LDPAMDLHAEMMARDLKPSM-NTWHV 1157 (1262)
Q Consensus 1087 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~ll~~-~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~ 1157 (1262)
.+.....-|++.|+.+.|++.+++..++ |.+-|+..+..-+.. .++ +.+-++..+.+.+.|-.-+. .-+..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4444455566666666666666554442 555555554444433 232 22333333344444433321 11222
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHH
Q 000837 1158 LVHKLC-QEGRTTEAERLLISMV 1179 (1262)
Q Consensus 1158 l~~~~~-~~g~~~~A~~l~~~~~ 1179 (1262)
.-..|+ ...++.+|-.+|-..+
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHc
Confidence 222222 2346666666666554
No 370
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.13 E-value=90 Score=27.66 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcccHHHHHHHHHhhCChhHHHHHHH
Q 000837 300 DRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVLAGNRIIHTLCSIFGSKRADLFVQ 378 (1262)
Q Consensus 300 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 378 (1262)
....++|..+.+.+...+. -...+--+-+..+.+.|++++| +..-. ...||...|-.|-. .+.|-.+++...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3467788888888777653 2223333444567777888777 22222 44566666655543 45566666666666
Q ss_pred HHHHCCCCCCHHhH
Q 000837 379 ELEHSGFRPDEITF 392 (1262)
Q Consensus 379 ~m~~~g~~p~~~ty 392 (1262)
++..+| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 666555 3433333
No 371
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=58.95 E-value=4.3 Score=38.97 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=75.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 000837 1021 VISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGR 1100 (1262)
Q Consensus 1021 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 1100 (1262)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 455666677777777788877766555567778888888888877777777776221 1233455666777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 000837 1101 LDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGR 1167 (1262)
Q Consensus 1101 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 1167 (1262)
+++|.-++.++-... .... ++...++++.|+++..+. +++..|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~---~al~---i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---EALE---ILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---TCSS---TSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---HHHH---HHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 777777766533211 1110 111144555555333322 356677777777766554
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.55 E-value=4.7e+02 Score=32.89 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=21.3
Q ss_pred ChhhHHHHHHHhhccccccccccchhhhh
Q 000837 1221 DFSTHWSLISNLRNSNDKDNNRNSQGFLS 1249 (1262)
Q Consensus 1221 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1249 (1262)
...|+.+++.|+|+..|...-+.+...-+
T Consensus 859 sl~TVKtH~rniy~KLgV~~RtqAV~rAk 887 (894)
T COG2909 859 SLTTVKTHIRNIYQKLGVANRTQAVQRAK 887 (894)
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45689999999999988776655444333
No 373
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=58.42 E-value=60 Score=28.14 Aligned_cols=33 Identities=6% Similarity=0.310 Sum_probs=14.1
Q ss_pred CCCCChhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 000837 1010 GFNPSNRSLRSVISCLCEVGELGKSLELSQEMR 1042 (1262)
Q Consensus 1010 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 1042 (1262)
.+-|++....+.+.+|.+.+++..|+++++-+.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 374
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.32 E-value=1.3e+02 Score=31.19 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 000837 1134 DPAMDLHAEMMARDLKP-----SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT 1186 (1262)
Q Consensus 1134 ~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~ 1186 (1262)
..|.+.|++..+..-.| .......++....+.|+.++|.+.|.+++..+-.+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 35666676666543332 245667888889999999999999999997543333
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.20 E-value=2.5e+02 Score=31.29 Aligned_cols=136 Identities=15% Similarity=0.055 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhh---hCchHhHHHH
Q 000837 646 VRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCH---KKLLKESLQL 722 (1262)
Q Consensus 646 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 722 (1262)
.+.-+.+++++++.++. +......++..+.+..+.+...+.|+.+.... +-+...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 45667788888777553 66777788888888888888888888888763 1256666666665443 3356666666
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 000837 723 FECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNM 801 (1262)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 801 (1262)
|.+.+..-..... ..........-++. .-...+..+...+...|..+.|..+++.+++.++
T Consensus 125 y~~~l~~L~~~~~-----------~~~~~~~~~~~~e~-------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRS-----------GRMTSHPDLPELEE-------FMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhc-----------cccccccchhhHHH-------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6665432110000 00000000000000 0113344455666678888999999988888765
No 376
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.83 E-value=2.7e+02 Score=29.97 Aligned_cols=112 Identities=13% Similarity=0.229 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCccChhhHHHHHHHHHhcCChhhHHH
Q 000837 856 AEEASKLFRDMLS-QGMLLEDEVYNMLIQGHCE-AN-NLRKVRELLSAMIRK-RLSLSISSYRNLVRWMCMEGGVPWALN 931 (1262)
Q Consensus 856 ~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 931 (1262)
+.+|+++|+.... ..+.-|......+++.... .+ ....-.++.+-+... +-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666653221 2233466666666666654 11 222223333333322 344566666666777777777777777
Q ss_pred HHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 000837 932 LKELMLGQ-NKSHNLIIFNILVFHLMSSGNIFHVKRV 967 (1262)
Q Consensus 932 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 967 (1262)
.++..... ++..|...|...|......|+..-..++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 76665544 4455666777777777777775444333
No 377
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.71 E-value=1.7e+02 Score=30.30 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=47.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhcH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPSNRSL-RSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEA 1069 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A 1069 (1262)
...+++.|+..|.+.+. +.|+..+| ..-+-++.+..+++.+.+-....++ +.|+ ......+..++.....+++|
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 44455666665555555 45555333 3445566666666666666666655 3444 33444555666666667777
Q ss_pred HHHHHHHH
Q 000837 1070 EHFLDQIV 1077 (1262)
Q Consensus 1070 ~~~~~~m~ 1077 (1262)
+..+.+..
T Consensus 98 I~~Lqra~ 105 (284)
T KOG4642|consen 98 IKVLQRAY 105 (284)
T ss_pred HHHHHHHH
Confidence 77776663
No 378
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.07 E-value=16 Score=41.37 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 000837 1131 NKLDPAMDLHAEMMARDLKPSMNTW-HVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1131 g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
+.++.|+.+|-++++ +.||...| ..-..++.+.+++..|+.=+.++++.. +.-...|..-+.++.+.+.+.+|...
T Consensus 18 ~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred chHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHHH
Confidence 345555555555554 44533332 222344555555555555555555532 11244455555555555666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhh
Q 000837 1210 MQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1210 ~~~~~~~~~~p~~~~~~~~l~~l~ 1233 (1262)
|+.... +.|+.......+..+-
T Consensus 95 l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 95 LEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHhhh--cCcCcHHHHHHHHHHH
Confidence 665555 5555555555554443
No 379
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=55.52 E-value=1.2e+02 Score=30.05 Aligned_cols=32 Identities=6% Similarity=0.034 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 000837 195 KEVELLLLAMEREGILLKSNEIFSNLIQGYVGVG 228 (1262)
Q Consensus 195 ~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g 228 (1262)
++|.+-|++.+.-. |....++..++.+|...+
T Consensus 52 edAisK~eeAL~I~--P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALKIN--PNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHH
Confidence 33444444444333 556677777777776544
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.81 E-value=20 Score=25.98 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 000837 564 SLIKMVHARGNLKAALLLVDEMVRWG 589 (1262)
Q Consensus 564 ~li~~~~~~g~~~~A~~~~~~m~~~g 589 (1262)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57788999999999999999998654
No 381
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.67 E-value=1.9e+02 Score=27.12 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 000837 1047 VHDSIVQNAIAEGLLSRGK---LQEAEHFLDQIVDKDLVPD--TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS 1120 (1262)
Q Consensus 1047 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 1120 (1262)
.++..+...+..++.+..+ ..+.+.++++..+. -.|+ .....-|.-++.+.|++++++++.+.+++. +|+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCc
Confidence 4566677777778877654 66778889988862 2332 334445667788999999999999999885 5554
No 382
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=54.05 E-value=1.5e+02 Score=25.85 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1170 EAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1170 ~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
++.+-++.+....+.|++.+....+++|.+.+|+.-|+.+++-+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555555555555666666666666666666666666666665553
No 383
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.58 E-value=1.3e+02 Score=35.05 Aligned_cols=178 Identities=16% Similarity=0.104 Sum_probs=91.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHcCCCCCc--ccHHHHHHHHHhhC
Q 000837 293 VVRLLCRDRKIQESRNLVRKAMAFGLEPSSL--VFNEVAYGYCEKKDFEDLLSFFTEMKCTPDV--LAGNRIIHTLCSIF 368 (1262)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~li~~~~~~g 368 (1262)
.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++.-....+. ....+.+...+..|
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~ 113 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK 113 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhC
Confidence 344445566654 444555566555432 1123455667788888877766644211111 11234455556666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHH
Q 000837 369 GSKRADLFVQELEHSGFRPDEIT--FGILIGWTCREGNLRSALVFFSEILSRGLNPD---VHTYNSLISGMFKEGMSKHA 443 (1262)
Q Consensus 369 ~~~~A~~~~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~y~~li~~~~~~g~~~~A 443 (1262)
+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..++ +.|..++ ..-.+.|. ..+..|..+
T Consensus 114 ~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~e-- 182 (413)
T PHA02875 114 KL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIA-- 182 (413)
T ss_pred CH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHH--
Confidence 65 44555566676665432 134555666788876554444 4454433 22334443 344556654
Q ss_pred HHHHHHHHhCCCccCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 000837 444 KEILDEMVNRGITPSLSTY---RILLAGYCKARQFDEAKIMVSEMAKSGLI 491 (1262)
Q Consensus 444 ~~l~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 491 (1262)
+++.+.+.|..|+.... .+.+..-+..|+.+- .+-+.+.|..
T Consensus 183 --iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad 227 (413)
T PHA02875 183 --ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGAD 227 (413)
T ss_pred --HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcC
Confidence 44445567776664332 244554456676653 4444555643
No 384
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.30 E-value=5.3e+02 Score=31.99 Aligned_cols=80 Identities=5% Similarity=-0.119 Sum_probs=39.3
Q ss_pred HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC--CCcccHHHHHHHHhhhCc
Q 000837 638 QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWL--PGLEDCKSLVECLCHKKL 715 (1262)
Q Consensus 638 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~ 715 (1262)
..+...|+...|...+..+... .+......+.....+.|..+.+..........+.. --+..|...+..+.+...
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~ 491 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKG 491 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcC
Confidence 3455667777777777666653 23344444445555566666655544322211000 011235555555555555
Q ss_pred hHhHH
Q 000837 716 LKESL 720 (1262)
Q Consensus 716 ~~~A~ 720 (1262)
++.++
T Consensus 492 v~~~l 496 (644)
T PRK11619 492 IPQSY 496 (644)
T ss_pred CCHHH
Confidence 55443
No 385
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=51.37 E-value=7.3 Score=37.36 Aligned_cols=53 Identities=8% Similarity=0.011 Sum_probs=24.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHH
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIA 1004 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 1004 (1262)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544333344444555555555544444444433
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.18 E-value=24 Score=22.23 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
..|..++..+...|++++|...++..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35788899999999999999999988863
No 387
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.99 E-value=5.4e+02 Score=31.41 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------hhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 000837 949 NILVFHLMSSGNIFHVKRVLDELQENELLPDE----------VTYNFLIYGFSKHKDVSSSKYYIAAMVS 1008 (1262)
Q Consensus 949 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 1008 (1262)
..++-.|....+++..+++.+.+... ||. ..|...++---+-||-++|+...-.|++
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve 271 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE 271 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHH
Confidence 33444455555566666665555543 221 1122222222344566666666665555
No 388
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.22 E-value=4.8e+02 Score=33.79 Aligned_cols=141 Identities=18% Similarity=0.126 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCC--cchHHH
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLE--KDSFHD 292 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~--~~~~~~ 292 (1262)
..-..++.+|...|...+|++.|.+...- . ..++. +.-+++..-+ ..--+..|-.++.+. ..-|..
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg-~----ge~~a-L~~lv~~~~p------~~~sv~dG~t~s~e~t~lhYYlk 988 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSG-F----GEGNA-LRKLVYFLLP------KRFSVADGKTPSEELTALHYYLK 988 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhc-c----ccHHH-HHHHHHHhcC------CCCchhcCCCCCchHHHHHHHHH
Confidence 33446777788899999999999887642 1 12332 2222211000 000011222212222 234667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcc----cHHHHHHHHH
Q 000837 293 VVRLLCRDRKIQESRNLVRKAMAFGLE--P-SSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVL----AGNRIIHTLC 365 (1262)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~m~~~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~----~~~~li~~~~ 365 (1262)
+++.+-..+-.+++.++-..+++.--+ | -..+++.+-+-....|.+-+|...+-.- ||.. ....|+-.++
T Consensus 989 v~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 989 VVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHH
Confidence 777788888888888887777763211 1 1245555666666667766666555443 3322 2334555555
Q ss_pred hhCCh
Q 000837 366 SIFGS 370 (1262)
Q Consensus 366 ~~g~~ 370 (1262)
.+|+.
T Consensus 1066 ecg~l 1070 (1480)
T KOG4521|consen 1066 ECGEL 1070 (1480)
T ss_pred hccch
Confidence 55554
No 389
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.99 E-value=1.1e+02 Score=32.45 Aligned_cols=87 Identities=14% Similarity=0.057 Sum_probs=46.2
Q ss_pred HHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHH-----
Q 000837 707 VECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLC----- 781 (1262)
Q Consensus 707 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~----- 781 (1262)
|.++.+.+++.+++...-+......+.++.+...-|-.|.+.|....+.++-...++..-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455566666666655554444444444555555555555666666555555555554433333333555444333
Q ss_pred hcCCHHHHHHHH
Q 000837 782 KEKKFSVAFKML 793 (1262)
Q Consensus 782 ~~~~~~~A~~~~ 793 (1262)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.94 E-value=6.2e+02 Score=31.74 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=27.3
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 000837 815 LFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLS 868 (1262)
Q Consensus 815 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 868 (1262)
+...|+.+.|++.-..+. +..+|..|+..-...|+.+-|...|++.+.
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345566666665554443 344566666666666666666666655543
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.08 E-value=90 Score=36.41 Aligned_cols=121 Identities=17% Similarity=0.035 Sum_probs=70.6
Q ss_pred CCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 000837 799 KNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVY 878 (1262)
Q Consensus 799 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 878 (1262)
+...|-...++...-.+-..|+...|...+.......|.-..+....|.....+.|...+|-.++.+.+... ...+.++
T Consensus 601 ~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~ 679 (886)
T KOG4507|consen 601 KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTF 679 (886)
T ss_pred CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHH
Confidence 333444444443333334557777777777666554444344444556666666777777777776666544 2345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHH
Q 000837 879 NMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMC 921 (1262)
Q Consensus 879 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 921 (1262)
..+.+++....+++.|++.|+++.+.... +...-+.|...-|
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 66777777777777777777777766422 3444455544433
No 392
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.72 E-value=47 Score=27.53 Aligned_cols=50 Identities=6% Similarity=-0.043 Sum_probs=30.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1162 LCQEGRTTEAERLLISMVQLGDTPT--QEMYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1162 ~~~~g~~~~A~~l~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
++..++.++|+..|.++++.-..+. ..++-.+..+|+..|++.+++++--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888887522222 2333345566777777777665443
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.24 E-value=1.8e+02 Score=27.14 Aligned_cols=43 Identities=7% Similarity=0.092 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000837 1135 PAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLIS 1177 (1262)
Q Consensus 1135 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~ 1177 (1262)
++.++|+.|...|+-- -+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4445555554444333 234444444445555555555555443
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.78 E-value=4.5e+02 Score=29.74 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=9.8
Q ss_pred cCChhHHHHHHHHHHH
Q 000837 1130 CNKLDPAMDLHAEMMA 1145 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~ 1145 (1262)
.+++...+++++++..
T Consensus 317 ~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 317 SSKYASCLELLREIKP 332 (466)
T ss_pred hhhHHHHHHHHHHhcc
Confidence 5666666666666543
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.75 E-value=48 Score=27.50 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCChHHHHHHH
Q 000837 1062 SRGKLQEAEHFLDQIVDKDLVPD--TINYDNLIKRFCGYGRLDKAVDLL 1108 (1262)
Q Consensus 1062 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 1108 (1262)
...+.++|+..++..+++-..|. -.++..|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777776533322 345666677777777777766654
No 396
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.69 E-value=2.1e+02 Score=30.39 Aligned_cols=73 Identities=8% Similarity=0.024 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 000837 1149 KPSMNTWHVLVHKLCQEGRTTEAERLLISMVQ----LGDTPTQEMY-SSVVNRYSLENNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1149 ~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~----~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
.--..+|..++.-|++.++.+.+.++..+..+ .|.+-|.-.. ..++-.|....-.++.++..+.|++.|.+=+
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 33467888999999999999988887766553 4555554333 3666677777777888888888888876543
No 397
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.61 E-value=5.2e+02 Score=29.92 Aligned_cols=103 Identities=16% Similarity=0.034 Sum_probs=62.5
Q ss_pred cCChhHHHHHHHHHHHC---C--CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC--------
Q 000837 1130 CNKLDPAMDLHAEMMAR---D--LKP---SMNTWHVLVHKLCQEGRTTEAERLLISMVQ-------LGDTPT-------- 1186 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~---~--~~p---~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~-------~~~~p~-------- 1186 (1262)
.|++..|.+++...--. | +.| .-..|+.++-..++.|.+.-+..+|.++++ .|++|.
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 67777777766554311 1 122 223456777777777777777777777763 454442
Q ss_pred --HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1187 --QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1187 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
-.+.+..+-.|...|++-.|.+.|.+...- .-.++-.|.=++++.-
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 234445666778888888888888777662 2333446666666554
No 398
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.58 E-value=3e+02 Score=28.63 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
.+.++..++...|++-++++--..++.. .+.|..+|..-+.+....=+.++|..=++++++ ++|...
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 4667778888899999999999999876 466789999889999999999999999999988 566543
No 399
>PRK10941 hypothetical protein; Provisional
Probab=44.92 E-value=1.6e+02 Score=31.63 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhH
Q 000837 1155 WHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTH 1225 (1262)
Q Consensus 1155 ~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 1225 (1262)
...+-.+|.+.++++.|++..+.++... +.++.-+.--|-.|.+.|.+..|..=++..++. -|+++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCchhH
Confidence 4677778999999999999999999852 556777888899999999999999999999874 5555543
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.82 E-value=2.6e+02 Score=26.03 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQAM 1213 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 1213 (1262)
..|-.+--.|.+. .+++.++|+.|...|+.-. +..|...+..+...|++++|.++++..
T Consensus 66 ~RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 66 ERYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3343433344443 3399999999999887665 778889999999999999999999875
No 401
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.44 E-value=14 Score=39.92 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=65.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 000837 1097 GYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMARDLKPSM-NTWHVLVHKLCQEGRTTEAE 1172 (1262)
Q Consensus 1097 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 1172 (1262)
..|.+++|++.|...++.+ +|....|..--.. .++...|+.-+...++ ++||. .-|-.-..+-.-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 4677888888887777653 2222222211111 5667777777776665 55643 33444455555567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1173 RLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1173 ~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
..+..+.++++.+....|. -.+.-..+..++-...+++.++
T Consensus 203 ~dl~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSATL--KEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhccccHHHHHHH--HHhccchhhhhhchhHHHHHHH
Confidence 7777777776666555542 2334444555555555555554
No 402
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.44 E-value=1.4e+03 Score=34.25 Aligned_cols=217 Identities=14% Similarity=0.115 Sum_probs=105.9
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhhC----CCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHH
Q 000837 776 LIRGLCKE-KKFSVAFKMLDSMLDK----NMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGF 850 (1262)
Q Consensus 776 li~~~~~~-~~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 850 (1262)
|+..+.+. |.|-.++.+++..... +..++......+...|....+.|--.-++++-.. .|+ +.....|
T Consensus 2420 Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~---~~e----T~~a~s~ 2492 (3550)
T KOG0889|consen 2420 LIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEEDMFYGLWRRRAK---FPE----TMVALSY 2492 (3550)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhc---cHH----HHHHHHH
Confidence 33444433 2366666666654322 1334455556666666665555554444444321 111 2344568
Q ss_pred hhcCCHHHHHHHHHHHHHC---CCCC-CHHhHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHh
Q 000837 851 CVTGKAEEASKLFRDMLSQ---GMLL-EDEVYNM----LIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCM 922 (1262)
Q Consensus 851 ~~~g~~~~A~~~~~~m~~~---g~~p-d~~t~~~----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 922 (1262)
.+.|.+++|..++++...+ |..| +..-|.. -|.++.+..+|+-..++= -....+..++.+..+
T Consensus 2493 eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~---------k~~~~~~llle~aWr 2563 (3550)
T KOG0889|consen 2493 EQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFG---------KHEGNYELLLECAWR 2563 (3550)
T ss_pred HHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hccCCceeeeehhcc
Confidence 8899999999999887643 2222 2222333 333444455554433332 122334445666666
Q ss_pred cCChhhHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCC-HHHHHHHHHHHHHCC-----CCCCHhhH--HHHHHHhh
Q 000837 923 EGGVPWALNLKELMLGQNKSH---NLIIFNILVFHLMSSGN-IFHVKRVLDELQENE-----LLPDEVTY--NFLIYGFS 991 (1262)
Q Consensus 923 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g-----~~pd~~~~--~~li~~~~ 991 (1262)
..++..-...+....+...++ ....|..+...+-...+ ..+.....++..+.. --|+.+++ ..++.++.
T Consensus 2564 lsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~Q 2643 (3550)
T KOG0889|consen 2564 LSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQ 2643 (3550)
T ss_pred CCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHH
Confidence 777776666666555442222 22334444433333222 222222222222110 12444443 34556666
Q ss_pred cCCChhHHHHHHHHHHH
Q 000837 992 KHKDVSSSKYYIAAMVS 1008 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~ 1008 (1262)
.--...+|..++..+..
T Consensus 2644 qivEl~Ea~~I~s~l~~ 2660 (3550)
T KOG0889|consen 2644 QIVELQEAAQIYSDLND 2660 (3550)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 66666677666666554
No 403
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.69 E-value=2.3e+02 Score=30.22 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=39.8
Q ss_pred HHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 000837 987 IYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLS---- 1062 (1262)
Q Consensus 987 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~---- 1062 (1262)
|.+++..+++.+++.+.-+--+.--+.........|-.|.+.+.+..+.++-.......-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4556666666665554444333111112223333344555666666665555555543111122234444443332
Q ss_pred -cCCHHHHHHHH
Q 000837 1063 -RGKLQEAEHFL 1073 (1262)
Q Consensus 1063 -~g~~~~A~~~~ 1073 (1262)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555554
No 404
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.43 E-value=77 Score=24.14 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSV 1193 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 1193 (1262)
.+..++-++.+.|++++|.+.++.+++ ..|+..-...|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 456788889999999999999999998 46764444333
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.15 E-value=1.1e+02 Score=31.11 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 000837 1183 DTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSP 1220 (1262)
Q Consensus 1183 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 1220 (1262)
..|++..|..++.++...|+.++|....++++. +-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 467777777777777777777777777777776 455
No 406
>PRK12798 chemotaxis protein; Reviewed
Probab=41.95 E-value=5.8e+02 Score=29.15 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=70.9
Q ss_pred HHHhhcCCCCC-hHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCC
Q 000837 551 SKIIEDSMIPN-FNSLIKMVHA--RGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANK 627 (1262)
Q Consensus 551 ~~~~~~~~~~~-~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~ 627 (1262)
+.++..+..+. -..++.+..+ .|+..+|.+.+..+......+...-+-.|+.+-.....+...|..+|+...-..+.
T Consensus 101 r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPG 180 (421)
T PRK12798 101 RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPG 180 (421)
T ss_pred HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCc
Confidence 33344444444 3455665544 78888898888888776677778888888888888877788888888886544332
Q ss_pred C--ChHHHHHHHHHHHccCChHHHHHHHHHHhh
Q 000837 628 L--DQESLNLLIQACCKKGLVRDGKKIFDGMLQ 658 (1262)
Q Consensus 628 ~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 658 (1262)
. ....+-.-|....+.|+.+++..+-.+-..
T Consensus 181 TLvEEAALRRsi~la~~~g~~~rf~~la~~Y~r 213 (421)
T PRK12798 181 TLVEEAALRRSLFIAAQLGDADKFEALARNYLR 213 (421)
T ss_pred hHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHH
Confidence 2 333444445556677777776655444433
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.38 E-value=2.7e+02 Score=31.91 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 000837 1025 LCEVGELGKSLELSQEMRLKGLVHDSI--VQNAIAEGL--LSRGKLQEAEHFLDQIVD 1078 (1262)
Q Consensus 1025 ~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 1078 (1262)
+.+.+++..|.++++++... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555666666666655554 333322 222222222 334455555555555443
No 408
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.37 E-value=5.9e+02 Score=29.07 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 000837 1054 NAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKG 1115 (1262)
Q Consensus 1054 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 1115 (1262)
..|+.-|...|+..+|...++++--- ..-....+.+++.+.-+.|+-..-+.+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45666777788888888887776321 11125677788888888888777777777766654
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.98 E-value=1.3e+02 Score=26.18 Aligned_cols=55 Identities=9% Similarity=0.026 Sum_probs=34.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC---CCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1162 LCQEGRTTEAERLLISMVQLGD---TPT-----QEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1162 ~~~~g~~~~A~~l~~~~~~~~~---~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
..+.|++.+|.+.+.+..+... .+. ......++......|++++|.+.+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566777777666666654211 111 233345666677888888888888877764
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.87 E-value=2.5e+02 Score=25.23 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHhh
Q 000837 632 SLNLLIQACCKKGLVRDGKKIFDGMLQ 658 (1262)
Q Consensus 632 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 658 (1262)
-|..|+..|..+|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477778888888888888888887766
No 411
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.70 E-value=4.7e+02 Score=27.49 Aligned_cols=257 Identities=13% Similarity=0.086 Sum_probs=137.6
Q ss_pred CChhhHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHhhHHHHHHHhhcCCC
Q 000837 924 GGVPWALNLKELMLGQNKSHNLI---IFNILVFHLMSSGNIFHVKRVLDELQEN---EL--LPDEVTYNFLIYGFSKHKD 995 (1262)
Q Consensus 924 g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~pd~~~~~~li~~~~~~g~ 995 (1262)
.+.++|+.-|+++.+........ ....++..+.+.|++++..+.+.+|+.. .+ .-+....|.+++--+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35555666666555543322222 3345667777788888877777776542 11 1234455666665555555
Q ss_pred hhHHHHHHHHHHHC-----CCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC------CCHHHHHHHHHH
Q 000837 996 VSSSKYYIAAMVSK-----GFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLK-----GLV------HDSIVQNAIAEG 1059 (1262)
Q Consensus 996 ~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~~------~~~~~~~~l~~~ 1059 (1262)
.+.-.+.|+.-++. +-+.--.+-..|...|...|.+.+-.+++.++... |-. --..+|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 44444444433221 11111123345677788888888888888777642 110 014567777888
Q ss_pred HHhcCCHHHHHHHHHHHHh-CCCCCCHhHHHHHHHH-----HHhcCChHHHHHHHHHHHh----CCCCCCHHHHHHHHcc
Q 000837 1060 LLSRGKLQEAEHFLDQIVD-KDLVPDTINYDNLIKR-----FCGYGRLDKAVDLLNIMLK----KGSTPNSSSYDSIIST 1129 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~ll~~ 1129 (1262)
|...++...-..++++.+. +.-.|.+.... .|+- ..+.|++++|-.-|=+.-+ .| .|...+....+..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVL 278 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVL 278 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHH
Confidence 9888888888888988764 22344444333 3333 3567888888655544433 23 3333332221111
Q ss_pred cCChhHHHHHHHHHHHCCCCC-----------CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-----------SM--NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVV 1194 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-----------~~--~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~ 1194 (1262)
-..+.+.|++| ++ .....++.+|.. ++..+-++++..-.. .+-.|+-+-.++-
T Consensus 279 ----------ANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-~IM~DpFIReh~E 344 (440)
T KOG1464|consen 279 ----------ANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-NIMDDPFIREHIE 344 (440)
T ss_pred ----------HHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-cccccHHHHHHHH
Confidence 11222344444 23 345677777654 566666666655443 2455655544443
No 412
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=39.65 E-value=5.8e+02 Score=28.44 Aligned_cols=78 Identities=4% Similarity=-0.099 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHH
Q 000837 265 THLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEK---KDFEDL 341 (1262)
Q Consensus 265 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A 341 (1262)
.+.-+.+|+++++..+ .+......++..+.+..+.+...+-++++.... +-+...|...+...... -.+++.
T Consensus 47 ~E~klsilerAL~~np----~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKHNP----DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHH
Confidence 3455666677666643 244555666666666677777777777776653 33555555555433321 134444
Q ss_pred HHHHHH
Q 000837 342 LSFFTE 347 (1262)
Q Consensus 342 ~~~~~~ 347 (1262)
..+|.+
T Consensus 122 ~~~y~~ 127 (321)
T PF08424_consen 122 RDVYEK 127 (321)
T ss_pred HHHHHH
Confidence 444443
No 413
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.62 E-value=8.1e+02 Score=30.16 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=56.2
Q ss_pred CchHhHHHHHHHHHh-hcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 000837 714 KLLKESLQLFECMLV-SCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKM 792 (1262)
Q Consensus 714 g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~ 792 (1262)
|+.++|..+.+++.. .+|.....-.+.+..+++-+|+.....+++.-.... ...|+.-+..+.-++.-..+++....+
T Consensus 515 grqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~ 593 (929)
T KOG2062|consen 515 GRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPST 593 (929)
T ss_pred hhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHH
Confidence 333444444444433 233333334444445555555554444444332222 233555555666666667777777777
Q ss_pred HHHHhhCCCCCChhcH--HhHHHHHHhcCCHHHHHHHHHHHhh
Q 000837 793 LDSMLDKNMAPCLDVS--VSLIPQLFRTGRLEKAVALREISLK 833 (1262)
Q Consensus 793 ~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~ 833 (1262)
.+-+.+. ..|-+..- ..|.-+|+-.| ..+|+.+++.|..
T Consensus 594 V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 594 VSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred HHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 6666553 23332222 22222333333 3566677666654
No 414
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.99 E-value=1.6e+02 Score=25.52 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP-TQEMYSSVVNRYSLENNL 1203 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 1203 (1262)
|...-..++..+...|++++|++.+-.+++..... +...-..++..+...|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 55666777777777777777777777777643222 233334555555555553
No 415
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.80 E-value=9.1e+02 Score=30.49 Aligned_cols=171 Identities=12% Similarity=0.165 Sum_probs=90.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChh
Q 000837 294 VRLLCRDRKIQESRNLVRKAMAFGLEPSS--LVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSK 371 (1262)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 371 (1262)
=+.|...|+++.|.++-+. .|+. .++-.-...|.+.+.+..|-+++.++ ...+..+.--+....+.+
T Consensus 365 Wk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t-----~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAET-----LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-----hhhHHHHHHHHHhcCCHH
Confidence 3566777777777776443 3443 23334456677777888888888777 233444544555555444
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHH-HHHHH-----HhcCCHH----HHHHHHHH--------HHhC-CCCCCHHHHHHHHH
Q 000837 372 RADLFVQELEHSGFRPDEITFGI-LIGWT-----CREGNLR----SALVFFSE--------ILSR-GLNPDVHTYNSLIS 432 (1262)
Q Consensus 372 ~A~~~~~~m~~~g~~p~~~ty~~-li~~~-----~~~g~~~----~A~~~~~~--------m~~~-g~~p~~~~y~~li~ 432 (1262)
++..|-.=+-..++|...+-.. |..++ .+.++++ ++.+-++. +.+. ...-+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Confidence 4443322111233455444333 22221 1223222 23322221 1110 01112223344444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000837 433 GMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEM 485 (1262)
Q Consensus 433 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 485 (1262)
.+...|+.+++..+-.-|.+ |..++.-+++.|.+++|++++..-
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566777777776666654 677888899999999999888654
No 416
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.26 E-value=7e+02 Score=28.71 Aligned_cols=90 Identities=11% Similarity=0.040 Sum_probs=44.7
Q ss_pred hhhhccCCCHHHHHHHHHHHhhcCC-CCC-hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCch
Q 000837 534 GNGLYLDTDLDEYERKLSKIIEDSM-IPN-FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHI 611 (1262)
Q Consensus 534 ~~~~~~~~~~~~a~~~l~~~~~~~~-~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 611 (1262)
+.-....||+..|-+.+...+...+ .|+ .......+...|+++.+...+...... +.....+...+++...+.++ +
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r-~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR-W 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh-H
Confidence 3444556777777766666555433 333 222333445567777776666554321 22233344444444444444 4
Q ss_pred HHHHHHHHHhhhhc
Q 000837 612 KACTGLLEKMPKLA 625 (1262)
Q Consensus 612 ~~a~~l~~~~~~~~ 625 (1262)
++|..+-+.|....
T Consensus 374 ~~a~s~a~~~l~~e 387 (831)
T PRK15180 374 REALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHHHHHhccc
Confidence 55554444444433
No 417
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.26 E-value=1.8e+02 Score=30.62 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=36.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 000837 1020 SVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLS-RGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1020 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~ 1077 (1262)
.++..+.+.|+++++.++++++.+.+...+..-.+.|-.+|-. -|....++.++....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4566777888888888888888887666666666666666633 244455555555554
No 418
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.14 E-value=1.5e+03 Score=32.49 Aligned_cols=322 Identities=9% Similarity=0.038 Sum_probs=164.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHh----hhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHH
Q 000837 219 NLIQGYVGVGDVERAVLVFDQM----RGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVV 294 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~ 294 (1262)
.|.++=.+++.+.+|+-.+++- ++.. .....|-.+...|...+++|....+...-. -......-+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---------a~~sl~~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF---------ADPSLYQQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh---------cCccHHHHH
Confidence 5666777888899999888883 3221 122334444447888888887776665311 112234445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHH-HHHHHhhCChh
Q 000837 295 RLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRI-IHTLCSIFGSK 371 (1262)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l-i~~~~~~g~~~ 371 (1262)
-.....|++..|...|+.+.+.+ ++..-.++.+++.....|.+..++-..+.. ...+....++++ +.+-.+.++++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchh
Confidence 56677788888888888888765 344667777777777778887777766655 333444444443 33335555555
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHH--HHHHHhcCCHHH--HHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcC
Q 000837 372 RADLFVQELEHSGFRPDEITFGIL--IGWTCREGNLRS--ALVFFSEILSR--------GLNP-DVHTYNSLISGMFKEG 438 (1262)
Q Consensus 372 ~A~~~~~~m~~~g~~p~~~ty~~l--i~~~~~~g~~~~--A~~~~~~m~~~--------g~~p-~~~~y~~li~~~~~~g 438 (1262)
....... . .+..+|.+. +..+.+..+-+. -....+-+.+. ++.- =...|..++....-..
T Consensus 1536 ~~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 5554433 1 122233332 222222211111 11122222211 1111 1234444443332211
Q ss_pred ChHHHHHHHHHHHh-CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCcccCccchhhhhHHHhcCCChhhhhh
Q 000837 439 MSKHAKEILDEMVN-RGITPSLSTYRILLAGYCKARQFDEAKIMVSE-MAKSGLIELSSLEDPLSKGFMILGLNPSAVRL 516 (1262)
Q Consensus 439 ~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1262)
.+.-.+.+..... ....-+..-|..-+.--....+..+-+--+++ +......
T Consensus 1609 -l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~------------------------- 1662 (2382)
T KOG0890|consen 1609 -LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR------------------------- 1662 (2382)
T ss_pred -HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc-------------------------
Confidence 1111111111100 00001111122211110001111111111111 1110000
Q ss_pred ccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 000837 517 RRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRW 588 (1262)
Q Consensus 517 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 588 (1262)
...+..-.++|....+...+.|.++.|...+-...+......+-..+.-.-+.|+...|+.++++.++.
T Consensus 1663 ---~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1663 ---SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred ---ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 011113356788888888889999999998888877773333888899999999999999999998754
No 419
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.78 E-value=4.5e+02 Score=26.34 Aligned_cols=55 Identities=7% Similarity=0.082 Sum_probs=31.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCC--------------CCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 000837 845 AFISGFCVTGKAEEASKLFRDMLSQGML--------------LEDEVYNMLIQGHCEANNLRKVRELLS 899 (1262)
Q Consensus 845 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--------------pd~~t~~~ll~~~~~~g~~~~a~~~~~ 899 (1262)
+++..|.+.-++.+..++++.|.+..+. +.-...|.....+.+.|+++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3555666777777777777777653221 122334555555555666666655554
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.68 E-value=6.8e+02 Score=28.42 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHH-HHHHHH------hhCChhHHHHHHHHHHHCCCCCCHHh
Q 000837 319 EPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNR-IIHTLC------SIFGSKRADLFVQELEHSGFRPDEIT 391 (1262)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-li~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~t 391 (1262)
+-.+.++..+-..+...|+.+.|.++.++.- .++.. +...+. ..|.. . ..-...-|..-
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL-----f~~e~~~~~~F~~~~~~~~~g~~---r------L~~~~~eNR~f 102 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL-----FAFERAFHPSFSPFRSNLTSGNC---R------LDYRRPENRQF 102 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHhhhhhcccccCcc---c------cCCccccchHH
Confidence 5566677777777777777777777777650 00000 000000 00000 0 00001123333
Q ss_pred HHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhC------CCccCHHH
Q 000837 392 FGIL---IGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMF-KEGMSKHAKEILDEMVNR------GITPSLST 461 (1262)
Q Consensus 392 y~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~-~~g~~~~A~~l~~~m~~~------g~~p~~~~ 461 (1262)
|.++ |..+.+.|.+..|+++.+-+.+..+.-|...--.+|+.|+ +.++++--.++.+..... ..-|+ ..
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a 181 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FA 181 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HH
Confidence 4433 4567788999999999988888877667777777788774 667777777777765542 11333 44
Q ss_pred HHHHHHHHHHcCCH---------------HHHHHHHHHHHHcC
Q 000837 462 YRILLAGYCKARQF---------------DEAKIMVSEMAKSG 489 (1262)
Q Consensus 462 ~~~li~~~~~~g~~---------------~~A~~l~~~m~~~~ 489 (1262)
|+.-+.-+ ..++. +.|.+.+.+....-
T Consensus 182 ~S~aLA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 182 FSIALAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHH-HhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 55544433 33443 77877777766543
No 421
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=36.27 E-value=4.4e+02 Score=26.14 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 000837 305 ESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSG 384 (1262)
Q Consensus 305 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 384 (1262)
.-.++.+++.+.++.++. +++++..+.+.++..|..---..|..-.+.| ..-..+.+++.+.|
T Consensus 36 se~ELr~kL~k~~~~~~~---------------Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG 98 (174)
T COG2137 36 SEKELRRKLAKKEFSEEI---------------IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG 98 (174)
T ss_pred HHHHHHHHHHhccCCHHH---------------HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC
Confidence 345677778777777655 4555555555555555554445555555555 45667788888888
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 000837 385 FRPDEITFGILIGWTCREGNLRSALVFFSEILSRG-LNPDVHTYNSLISGMFKEG-MSKHAKEILDEMVN 452 (1262)
Q Consensus 385 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~y~~li~~~~~~g-~~~~A~~l~~~m~~ 452 (1262)
+.+ .+-...+..++.....+.|..++..-.+.. ..|+..-...+...+...| .++.+..++..+..
T Consensus 99 i~~--~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~~ 166 (174)
T COG2137 99 IDD--EIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAEE 166 (174)
T ss_pred CCH--HHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Confidence 544 344455555666666667776666555443 4455444444555444444 34555555554443
No 422
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.89 E-value=7.5e+02 Score=28.66 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 000837 564 SLIKMVHARGNLKAALLLVDEMVRWGQELSL 594 (1262)
Q Consensus 564 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 594 (1262)
.++...+..|+.+- .+-+.+.|..++.
T Consensus 204 t~l~~A~~~~~~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 204 AALCYAIENNKIDI----VRLFIKRGADCNI 230 (413)
T ss_pred hHHHHHHHcCCHHH----HHHHHHCCcCcch
Confidence 33443445565543 3344556666654
No 423
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.58 E-value=4.3e+02 Score=27.36 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 000837 1046 LVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP---DTINY--DNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS 1120 (1262)
Q Consensus 1046 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 1120 (1262)
+.+...-.|.|+--|.-...+.+|...|..-. |+.| |..++ ..-|......|+.++|++..+.+.-.-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 44555556666655555555555555554432 3444 22222 34456667888888888888776543223332
Q ss_pred HHHHHHH--cc-----cCChhHHHHHHHHHH
Q 000837 1121 SSYDSII--ST-----CNKLDPAMDLHAEMM 1144 (1262)
Q Consensus 1121 ~~~~~ll--~~-----~g~~~~A~~~~~~~~ 1144 (1262)
..+-.+. .. .|..++|+++.+.-.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 1121111 11 666777777665543
No 424
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.48 E-value=1.8e+02 Score=26.91 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1171 AERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1171 A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
+.++|..|...|+-.. +..|...+..+...|++++|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444332 3333344444555555555555443
No 425
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.86 E-value=2.9e+02 Score=30.58 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1135 PAMDLHAEMMARDLKPS----MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYS 1198 (1262)
Q Consensus 1135 ~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~ 1198 (1262)
+...++..+++ --|+ +..|.++++...+.|.+++.+.+|+.++..|..|-..+-..+++++-
T Consensus 121 ei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 121 EILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 55566666654 2343 46789999999999999999999999999999998888777777766
No 426
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.65 E-value=2.3e+02 Score=24.44 Aligned_cols=32 Identities=22% Similarity=0.114 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREG 208 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~ 208 (1262)
++++-..++..+...|++++|.+.|..+++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45555666666666666666666666665543
No 427
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.61 E-value=7.3e+02 Score=28.14 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=74.6
Q ss_pred CCCCHhhHHHHHHHh--hcCCChhHHHHHHHHHHHCCCCCChhcHHHHHH--------HHHhcCChhHHHHHHHHHHHc-
Q 000837 976 LLPDEVTYNFLIYGF--SKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVIS--------CLCEVGELGKSLELSQEMRLK- 1044 (1262)
Q Consensus 976 ~~pd~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--------~~~~~g~~~~A~~~~~~~~~~- 1044 (1262)
+.+....|-.++-.+ ..+.++.+|..+-+..+..-...+..++..+.. .|-..|+..+-..++......
T Consensus 120 ~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 120 LPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 334455565555443 334678888887777665433445555544332 233456666666666554432
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH-------HHHHHHHhcCChHHHHHHHHHHHh
Q 000837 1045 GLVHD----SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYD-------NLIKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1045 g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
.+..| ....|.|+..|...+.++.|..+..+.. .|+..+-+ -+.....-.+++..|.+.|-..+.
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 23333 3444556666666777777777666553 33322211 122333456778888888877776
Q ss_pred C
Q 000837 1114 K 1114 (1262)
Q Consensus 1114 ~ 1114 (1262)
+
T Consensus 276 k 276 (493)
T KOG2581|consen 276 K 276 (493)
T ss_pred h
Confidence 5
No 428
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.55 E-value=61 Score=33.04 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh
Q 000837 1162 LCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDF 1222 (1262)
Q Consensus 1162 ~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 1222 (1262)
..+.|+.+.|.+++.++.+. .+.....|..++..-.+.|+.+.|.+.|++.++ ++|++
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCccc
Confidence 34556666666666666653 123355666666666666666666666666666 44443
No 429
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.48 E-value=6.1e+02 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 000837 1063 RGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRF 1095 (1262)
Q Consensus 1063 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 1095 (1262)
.+-++++..++++....+. |..+.....|.++
T Consensus 269 r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~ 300 (415)
T COG4941 269 RALIDEGLALLDRALASRR-PGPYQLQAAIAAL 300 (415)
T ss_pred HHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHH
Confidence 3455666666666655433 4555555444443
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.22 E-value=1.8e+02 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
..-.++......|++++|...++++++
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566677888999999999999886
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.13 E-value=90 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 000837 465 LLAGYCKARQFDEAKIMVSEM 485 (1262)
Q Consensus 465 li~~~~~~g~~~~A~~l~~~m 485 (1262)
+|.||...|++++|.+.++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 432
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.96 E-value=3.5e+02 Score=24.23 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 000837 1030 ELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLN 1109 (1262)
Q Consensus 1030 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 1109 (1262)
..++|..+.+-+...+. -...+--+-+..+.++|++++| +..-.. ...||...|-.|. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 56777777777666543 2233334445567778888888 222222 2456766665543 356777777777777
Q ss_pred HHHhCCCCCCHHHH
Q 000837 1110 IMLKKGSTPNSSSY 1123 (1262)
Q Consensus 1110 ~~~~~~~~p~~~~~ 1123 (1262)
++-.+| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 666655 3443333
No 433
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=33.47 E-value=1.2e+03 Score=30.43 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1049 DSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1049 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
+..+-...+.++.+.|..+.+...+..+++. ++...-...+.++...+. +++...+-.++
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 4555555555555555544333333333331 233333444444444443 23444444444
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.40 E-value=5.5e+02 Score=27.04 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhc-CCChhHHHHHHHHHH
Q 000837 951 LVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSK-HKDVSSSKYYIAAMV 1007 (1262)
Q Consensus 951 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 1007 (1262)
++...-+.|+++++.+.++++.+.+...+..-.+.+-.+|-. .|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 344455566666666666666665544444444444444422 133334444444443
No 435
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.25 E-value=7.5e+02 Score=27.60 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=14.9
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 000837 1163 CQEGRTTEAERLLISMVQLG 1182 (1262)
Q Consensus 1163 ~~~g~~~~A~~l~~~~~~~~ 1182 (1262)
.+.+.-++|.+.+-+|.+.|
T Consensus 327 vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 327 VQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHhcchHHHHHHHHHHhccC
Confidence 35577788888888888754
No 436
>PRK12798 chemotaxis protein; Reviewed
Probab=32.16 E-value=8.2e+02 Score=28.02 Aligned_cols=188 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh-cCCChhHHHHHHHHHHHCCCCCCh----hcHHHHHHHHHhcCChh
Q 000837 958 SGNIFHVKRVLDELQENELLPDEVTYNFLIYGFS-KHKDVSSSKYYIAAMVSKGFNPSN----RSLRSVISCLCEVGELG 1032 (1262)
Q Consensus 958 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~ 1032 (1262)
.|+..++.+.|..+......+....|-.|+.+-. ...++..|+++|+...-. -|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4555666666655555444455555555555432 334566666666655541 2221 12222233445566666
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCChHHHHHH
Q 000837 1033 KSLELSQEMRLKGLVHDS---IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD--TINYDNLIKRFCGYGRLDKAVDL 1107 (1262)
Q Consensus 1033 ~A~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 1107 (1262)
++..+-..-... +..++ ..+..+...+.+.++-.. ..-+..++.. +.|+ ...|-.+...-...|+.+-|.-.
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 655554444332 22221 122233333333332111 1223333332 2222 44666666666777887777777
Q ss_pred HHHHHhCCCCCC--H---HHHHHHHcc-cCChhHHHHHHHHHHHCCCCC
Q 000837 1108 LNIMLKKGSTPN--S---SSYDSIIST-CNKLDPAMDLHAEMMARDLKP 1150 (1262)
Q Consensus 1108 ~~~~~~~~~~p~--~---~~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p 1150 (1262)
-++.+...-..+ . ..|...... ..++++|.+.+..+-...+.|
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 776666421111 1 112222222 566777777777776655655
No 437
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=32.12 E-value=4.6e+02 Score=25.09 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---C--CCCHhhHHHHHHHhhcCCC-hhHHHHHHHHHHHCCCCCChhcHHHH
Q 000837 948 FNILVFHLMSSGNIFHVKRVLDELQENE---L--LPDEVTYNFLIYGFSKHKD-VSSSKYYIAAMVSKGFNPSNRSLRSV 1021 (1262)
Q Consensus 948 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 1021 (1262)
.|.++......+++.-.+.+++.+..-. + ..+...|++++.+.++..- ---+..+|+-|.+.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555556666666666655553210 0 1245667788887766554 34566777777776777788888888
Q ss_pred HHHHHhc
Q 000837 1022 ISCLCEV 1028 (1262)
Q Consensus 1022 i~~~~~~ 1028 (1262)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8766554
No 438
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=31.44 E-value=1.2e+02 Score=20.87 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCCHhHHHHH
Q 000837 1191 SSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1191 ~~l~~~~~~~g~~~~A~~~ 1209 (1262)
..++-.+...|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444445555555555555
No 439
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.39 E-value=1.2e+03 Score=29.58 Aligned_cols=256 Identities=13% Similarity=0.096 Sum_probs=122.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhc
Q 000837 776 LIRGLCKEKKFSVAFKMLDSMLDKNMAPCL--DVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVT 853 (1262)
Q Consensus 776 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 853 (1262)
+-+.|...|++++|+++-.. .|+. .++..-.+.|...+++..|-+++.++.+. +..+.--+...
T Consensus 364 vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~--------FEEVaLKFl~~ 429 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSS--------FEEVALKFLEI 429 (911)
T ss_pred HHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------HHHHHHHHHhc
Confidence 34567778888888776433 2332 24445566778888888888888877432 33344444455
Q ss_pred CCHHHHHHHH-HHHHHCCCCCCHHhHHH-----HHHHHH-hcCCH----HHHHHHHHHHHHC---------CCccChhhH
Q 000837 854 GKAEEASKLF-RDMLSQGMLLEDEVYNM-----LIQGHC-EANNL----RKVRELLSAMIRK---------RLSLSISSY 913 (1262)
Q Consensus 854 g~~~~A~~~~-~~m~~~g~~pd~~t~~~-----ll~~~~-~~g~~----~~a~~~~~~~~~~---------~~~~~~~~~ 913 (1262)
.+.+ +++.| .+=++ +++|...+-.. ++..|. +.+++ +++.+.++.-.+. ....+...+
T Consensus 430 ~~~~-~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nr 507 (911)
T KOG2034|consen 430 NQER-ALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNR 507 (911)
T ss_pred CCHH-HHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhH
Confidence 5544 33332 22111 24443322111 222221 22222 2222222211110 011122233
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcC
Q 000837 914 RNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKH 993 (1262)
Q Consensus 914 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 993 (1262)
.+....+...|+.+.....-..+.. |..++..+...+.+++|++++..-.. |+. .| .. .--...
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~----~el-~y-k~-ap~Li~ 571 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRN----PEL-FY-KY-APELIT 571 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccc----hhh-HH-Hh-hhHHHh
Confidence 4444555566777766655444433 56777778888888888887755411 111 11 00 000112
Q ss_pred CChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 000837 994 KDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEV---GELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 994 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 1066 (1262)
..+.+....|.++.. ..+......++..+.+. .....+..+++-....--.-++..+|.++..|.+..+-
T Consensus 572 ~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 572 HSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD 644 (911)
T ss_pred cCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc
Confidence 233333333333322 11222233344444443 23445555555554432334677888888877765543
No 440
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.23 E-value=2.2e+02 Score=24.83 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHH
Q 000837 1174 LLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWS 1227 (1262)
Q Consensus 1174 l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 1227 (1262)
.++++...+....+..-.+|+-.|.+.|+.+.|..-|+.-.. .-|+..++..
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmD 110 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMD 110 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHH
Confidence 344444333333333333455555555555555555554333 4444444433
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.79 E-value=6e+02 Score=32.99 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCChHHHHHHH
Q 000837 1053 QNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD----TINYDNLIKRFCGYGRLDKAVDLL 1108 (1262)
Q Consensus 1053 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 1108 (1262)
|...+..+-..+-.+++.++...+++. +.++ ..+++++.+.....|.+.+|.+.+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 444555555556666666665555543 2222 234445555555555555554443
No 442
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=1.1e+03 Score=29.04 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=70.4
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCh
Q 000837 849 GFCVTGKAEEASKLFRDMLSQGMLL--EDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGV 926 (1262)
Q Consensus 849 ~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 926 (1262)
++.-.|+.++|-.+.++|.... .| .....-.+..+|+-.|+.....+++.-.+.. ...|+..+....-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 4555677778888888887632 22 1112334556788888887777777665543 233444444455555566777
Q ss_pred hhHHHHHHHHHhCCCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 000837 927 PWALNLKELMLGQNKSHNLIIFNILVFH--LMSSGNIFHVKRVLDELQE 973 (1262)
Q Consensus 927 ~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~ 973 (1262)
+....+.+.+.+. ..|.+..-.++.-+ |+..| ..+|+.+++.|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 7777666655543 34444333333333 33333 3567888887776
No 443
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.31 E-value=6.1e+02 Score=29.94 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT 1186 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~ 1186 (1262)
+...+..++..+...+....|+.++.++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 333444444444444445566666666666665443
No 444
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=85 Score=38.55 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=48.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
+|+++.|++.-+++ .+..+|..|+....++|+.+-|+..+++... |..|...|.-.|+.++-.++
T Consensus 656 ~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 656 CGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred cCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 77777777766555 2566788888888888888888887777654 45555566666776666665
Q ss_pred HHHHHH
Q 000837 1210 MQAMQQ 1215 (1262)
Q Consensus 1210 ~~~~~~ 1215 (1262)
.+.++.
T Consensus 721 ~~iae~ 726 (1202)
T KOG0292|consen 721 MKIAEI 726 (1202)
T ss_pred HHHHHh
Confidence 555544
No 445
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.73 E-value=7.2e+02 Score=26.59 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=61.4
Q ss_pred ChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHhHHHHH-HHHHHhcC
Q 000837 1030 ELGKSLELSQEMRLKGLVHD-----SIVQNAIAEGLLSRGKLQEAEHFLDQIV----DKDLVPDTINYDNL-IKRFCGYG 1099 (1262)
Q Consensus 1030 ~~~~A~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l-~~~~~~~g 1099 (1262)
.+++.++++...++...+.. ...-.-++..+.+.|.+.+|+.+...+. +.+-+|+..+...+ -.+|....
T Consensus 100 sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~ir 179 (421)
T COG5159 100 SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIR 179 (421)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHH
Confidence 45555555555544211111 1222456778888899999888776554 33445554333322 24555555
Q ss_pred ChHHHHHHHHHHHhC----CCCCCHHHHHHHHcc-----cCChhHHHHHHHHHHH
Q 000837 1100 RLDKAVDLLNIMLKK----GSTPNSSSYDSIIST-----CNKLDPAMDLHAEMMA 1145 (1262)
Q Consensus 1100 ~~~~A~~~~~~~~~~----~~~p~~~~~~~ll~~-----~g~~~~A~~~~~~~~~ 1145 (1262)
+..++..-+...... -.+|-...-.-++.+ ..++..|..+|-+..+
T Consensus 180 nv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 180 NVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 555555444433321 234444433334444 4557777777776665
No 446
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.66 E-value=2.2e+02 Score=26.39 Aligned_cols=74 Identities=8% Similarity=0.103 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000837 1102 DKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQEGRTTEAERLLIS 1177 (1262)
Q Consensus 1102 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~l~~~ 1177 (1262)
+++.+.|.... .++-|......-+......++..++|..|...++-.. +..|...+..+...|++.+|.++++.
T Consensus 50 erc~~~f~~~~--~YknD~RyLkiWi~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 50 ERCIRYFEDDE--RYKNDPRYLKIWLKYADNCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHhhhhh--hhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34444444332 3455555444433333334568889999998888774 45678888889999999999999864
No 447
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.54 E-value=2.9e+02 Score=23.70 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=23.5
Q ss_pred hcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHH
Q 000837 436 KEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAK 479 (1262)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 479 (1262)
..|+.+.|.++++.+. +| | ..|..++.++...|+-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 4466677777777766 53 2 34556666666666655443
No 448
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.44 E-value=3.6e+02 Score=26.87 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHhhcCCCCC----------hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 000837 542 DLDEYERKLSKIIEDSMIPN----------FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCAS 607 (1262)
Q Consensus 542 ~~~~a~~~l~~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 607 (1262)
-++.|..+++.+.+..+.|. --..+..|.+.|.+++|.+++++... .|+......-+....+.
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 35666667776666665553 12345578899999999999999876 34444444444443333
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.71 E-value=2.5e+02 Score=26.96 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1174 LLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1174 l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
+.+.+.+.|+++++.= ..++..+...+++-.|.++++.+.+.+-.-+.+|.|..|..+..
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 4445555677766554 34566777777778888888888887666677777777766654
No 450
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.55 E-value=8.7e+02 Score=27.15 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=36.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH----HhcCChHHHHHHHHHHHhCC
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRF----CGYGRLDKAVDLLNIMLKKG 1115 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~ 1115 (1262)
+.+-++..-|...+..+.++++..-..+|.+|-.-+ ...+..++|.+..-.|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 445677777777777777665554455666664333 34567777777777777754
No 451
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.53 E-value=4.7e+02 Score=26.07 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHCCCCCC--H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1133 LDPAMDLHAEMMARDLKPS--M-----NTWHVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p~--~-----~~~~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
++.|+.+++.+.+.--.|. . ..-...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5677777777775322221 0 1223444557777777777777777765
No 452
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.46 E-value=1.2e+03 Score=29.77 Aligned_cols=163 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHH----HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHH
Q 000837 1067 QEAEHFLDQIVDKDLVPDTINYDNLIKR----FCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHA 1141 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~ 1141 (1262)
++|.++|+.+++.-..--....+.+-.. -....+..+..++++..-.--..-|.......+.. .....+|.++-.
T Consensus 1092 e~~~k~~~~l~s~ypd~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL~~y~~~k~D~r~da~klk~ 1171 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYPDYLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQEIDTEALARYYALKEDTRPDAVKLKK 1171 (1304)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhcccCCcchHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 1142 EMMARDLKPSMNTWHVLVHKLCQEGR----------------------TTEAERLLISMVQLGDTPTQEMYSSVVNRYSL 1199 (1262)
Q Consensus 1142 ~~~~~~~~p~~~~~~~l~~~~~~~g~----------------------~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~ 1199 (1262)
+|.+ .-+.++.++++.|. .+.-.+.|.++.+.=-..|+.+|..-.+-+..
T Consensus 1172 ~me~--------qk~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~ 1243 (1304)
T KOG1114|consen 1172 KMEK--------QKDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKHAKA 1243 (1304)
T ss_pred HHHH--------HHHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHHHH
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcccc
Q 000837 1200 ENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSND 1237 (1262)
Q Consensus 1200 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 1237 (1262)
.|++..|.+++.++++..-+-.....|..+.+|....|
T Consensus 1244 ~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1244 LGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
No 453
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=28.10 E-value=8e+02 Score=26.60 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHhhcCCHHHHH
Q 000837 840 FSFHSAFISGFCVTGKAEEAS 860 (1262)
Q Consensus 840 ~~~~~~li~~~~~~g~~~~A~ 860 (1262)
..+|..|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 445777888888888776543
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.81 E-value=1.3e+02 Score=23.74 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
.++.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 455
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=27.78 E-value=5.5e+02 Score=24.59 Aligned_cols=49 Identities=10% Similarity=0.278 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHccCC-hHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHh
Q 000837 629 DQESLNLLIQACCKKGL-VRDGKKIFDGMLQRGLTIENESYTTLLMSLCK 677 (1262)
Q Consensus 629 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 677 (1262)
+...|.+++.+.++..- ---+..+|..|.+.+.++++.-|..+|.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44555566655544444 23345555555555555566666666655543
No 456
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=27.76 E-value=3.2e+02 Score=25.17 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000837 1135 PAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVN 1195 (1262)
Q Consensus 1135 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~ 1195 (1262)
+..+-+..+....+-|++.....-.++|.+.+|+..|.++|+-.... ..+.-..|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
No 457
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.66 E-value=5e+02 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc
Q 000837 325 FNEVAYGYCEKKDFEDLLSFFTEM 348 (1262)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~~ 348 (1262)
++..+-.....|++++|..-++++
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 333333344455566665555544
No 458
>PRK10941 hypothetical protein; Provisional
Probab=27.66 E-value=4.9e+02 Score=28.03 Aligned_cols=61 Identities=11% Similarity=-0.084 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 218 SNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 218 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
+.|-.+|.+.++++.|+.+.+.+....+. ++.-+.-.+-.|.+.|.+..|..-++..++.-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34455556666666666666666655433 34444444555556666666665555555544
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.54 E-value=7.9e+02 Score=26.37 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHhhCChhHHHHHHHHHHH----CCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----
Q 000837 354 VLAGNRIIHTLCSIFGSKRADLFVQELEH----SGFRPDEITFGI-LIGWTCREGNLRSALVFFSEILSRGLNPDV---- 424 (1262)
Q Consensus 354 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~ty~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---- 424 (1262)
...+..+...||+.++.+.+.++..+..+ .|.+.|+.-.-+ |.-.|....=+++-++..+.|.++|...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44555666666666666666665554332 244555432222 222233344455566666666666654332
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 425 HTYNSLISGMFKEGMSKHAKEILDEMV 451 (1262)
Q Consensus 425 ~~y~~li~~~~~~g~~~~A~~l~~~m~ 451 (1262)
.+|..+-.+. ..++.+|-.++.+..
T Consensus 195 K~Y~Gi~~m~--~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIFKMM--RRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHH--HHhhHHHHHHHHHHh
Confidence 2333332221 234555555555444
No 460
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.52 E-value=1.2e+02 Score=19.43 Aligned_cols=14 Identities=7% Similarity=0.321 Sum_probs=6.9
Q ss_pred CHhHHHHHHHHHHH
Q 000837 1202 NLGKASELMQAMQQ 1215 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~ 1215 (1262)
+.+.|..+|++++.
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34445555555554
No 461
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.24 E-value=8e+02 Score=26.31 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhCCCchHHHH
Q 000837 540 DTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDE----MVRWGQELSLSVFSALVKGLCASRSHIKACT 615 (1262)
Q Consensus 540 ~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~ 615 (1262)
.+++++|.+++.+. ...+.+.|+...|-++-.- ..+.+...+......++..+...+..-.+-.
T Consensus 3 ~kky~eAidLL~~G------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp TT-HHHHHHHHHHH------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred cccHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45667777766543 3445556665555444332 2334555555555555554444433222233
Q ss_pred HHHHHhhhh---cCCC--ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHH
Q 000837 616 GLLEKMPKL---ANKL--DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDI 690 (1262)
Q Consensus 616 ~l~~~~~~~---~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 690 (1262)
++.+.+.+- +..+ |+..-..+...|.+.|++.+|...|-.-. .|+...+..++......|...++--.+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~dlfi-- 144 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEADLFI-- 144 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HHHHH--
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcchhHHH--
Confidence 333333221 1222 66666777778888888888776653221 122233322333333333333221111
Q ss_pred HHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhh
Q 000837 691 AQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVS 729 (1262)
Q Consensus 691 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 729 (1262)
...+-.|.-.++...|...+....+.
T Consensus 145 -------------~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 145 -------------ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -------------HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12233455667777787777665543
No 462
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.48 E-value=56 Score=30.26 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=16.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 000837 1062 SRGKLQEAEHFLDQIVDKDLVPDTINYDNLIK 1093 (1262)
Q Consensus 1062 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 1093 (1262)
+.|.-..|..+|.+|++.|-+|| .|+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 34444555666666666665555 3444443
No 463
>PF13934 ELYS: Nuclear pore complex assembly
Probab=26.32 E-value=6.9e+02 Score=26.11 Aligned_cols=104 Identities=10% Similarity=0.048 Sum_probs=51.1
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhh
Q 000837 290 FHDVVRLLC--RDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSI 367 (1262)
Q Consensus 290 ~~~l~~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~ 367 (1262)
|...++++. ..+++++|.+.+-+- .+.| .--.-++.++...|+...|..++..++.......-..+......+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~ 153 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALAN 153 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHc
Confidence 444444433 345555555555221 1111 112235566666778888888887773222222112222223556
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 000837 368 FGSKRADLFVQELEHSGFRPDEITFGILIGWTCR 401 (1262)
Q Consensus 368 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 401 (1262)
+.+.+|+.+-+...+.. ....+..++..+..
T Consensus 154 ~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 154 GLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred CCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 77777777665543311 12355556665553
No 464
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.07 E-value=80 Score=34.43 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=10.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCC
Q 000837 1097 GYGRLDKAVDLLNIMLKKGSTP 1118 (1262)
Q Consensus 1097 ~~g~~~~A~~~~~~~~~~~~~p 1118 (1262)
..|++++|...+....+.++.+
T Consensus 194 llg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred HhhchHHHHHHHHHHHhccccH
Confidence 3444555544444444444333
No 465
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.77 E-value=8e+02 Score=28.11 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=35.7
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 000837 364 LCSIFGSKRADLFVQELEHSGFRPDEI--TFGILIGWTCR--EGNLRSALVFFSEILSR 418 (1262)
Q Consensus 364 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--ty~~li~~~~~--~g~~~~A~~~~~~m~~~ 418 (1262)
+.+.+++..|.++|+++.+. ++++.. .|..+..+|.. .-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567777888888888776 444444 34555555543 55777888888876655
No 466
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=25.62 E-value=2.3e+02 Score=21.05 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000837 296 LLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAY 330 (1262)
Q Consensus 296 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 330 (1262)
...+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34456777788888888888888888887776654
No 467
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.51 E-value=1.6e+02 Score=33.86 Aligned_cols=99 Identities=6% Similarity=-0.071 Sum_probs=49.8
Q ss_pred HHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCH
Q 000837 224 YVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKI 303 (1262)
Q Consensus 224 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~ 303 (1262)
....+.++.|+..|.+..+..+. .+..|.--..++.+.+++..|+.-+.++++..+. ....|..-..++.+.+++
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~----~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPT----YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCch----hhheeeeccHHHHhHHHH
Confidence 34455666666666666665432 3333433445666666666666666666665432 222333333344444455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 304 QESRNLVRKAMAFGLEPSSLVFNEVA 329 (1262)
Q Consensus 304 ~~a~~~~~~m~~~g~~~~~~~~~~li 329 (1262)
.+|...|+..... .|+..-....+
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHH
Confidence 5555555544432 34444333333
No 468
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=25.41 E-value=2.3e+02 Score=21.03 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=14.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 000837 401 REGNLRSALVFFSEILSRGLNPDVHTYNSL 430 (1262)
Q Consensus 401 ~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l 430 (1262)
+.|-++++..++++|.+.|+.-+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 444455555555555555554444444443
No 469
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.12 E-value=1.1e+03 Score=26.99 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--ccChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 000837 214 NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGL--VPFLSCYRVFINHLVKMKVTHLAFRVCVDM 275 (1262)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m 275 (1262)
......+..-|..+|+++.|++.|.+.++..- +.....|-.++..-...++|......-.+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 35677899999999999999999999887632 223344555555555566666655555444
No 470
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=25.06 E-value=4.4e+02 Score=22.61 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHH
Q 000837 198 ELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAF 269 (1262)
Q Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~ 269 (1262)
.++++.+.++|+- +......+-.+-...|+.+.|..+++.+. +|+. .|...+.++-..|.-..|.
T Consensus 22 ~~v~d~ll~~~il--T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL--TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC--CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhh
Confidence 3555666666643 33333333333335577777777777777 6433 4666677766666655543
No 471
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=24.96 E-value=2e+02 Score=30.82 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=32.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1163 CQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1163 ~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
.+.|+.+.|.++|+.+.+.. +.++.+...++......++.-+|.++|-+++. +.|.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~ns 184 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPGNS 184 (472)
T ss_pred HhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCCch
Confidence 45566666666666666531 33455555566555555666666666665555 455444
No 472
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.94 E-value=1.4e+02 Score=19.97 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q 000837 1168 TTEAERLLISMVQLGDTPTQEMYSS 1192 (1262)
Q Consensus 1168 ~~~A~~l~~~~~~~~~~p~~~~~~~ 1192 (1262)
++.|..++++.+. +.|++.+|..
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHH
Confidence 4455555555554 3455555543
No 473
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=24.80 E-value=1.7e+03 Score=29.24 Aligned_cols=110 Identities=20% Similarity=0.203 Sum_probs=54.9
Q ss_pred HHHHHHHhhcCC--ChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000837 983 YNFLIYGFSKHK--DVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGL 1060 (1262)
Q Consensus 983 ~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 1060 (1262)
...++.+|.+.+ ++++|+....++.+. +.......+.-++ -+-++.++|+.++.. + |. --+++-+-
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~---fLvDvn~Ly~~ALG~-Y--Dl--~Lal~VAq 882 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLC---FLVDVNKLYDVALGT-Y--DL--ELALMVAQ 882 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhe---eeccHHHHHHHHhhh-c--CH--HHHHHHHH
Confidence 345566666666 777777777777664 1111111111111 122333334333321 0 10 01233334
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 000837 1061 LSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNI 1110 (1262)
Q Consensus 1061 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1110 (1262)
-.+.|+.|=+-+++++.+ ++|+..-| .|+ ...|++++|++-+.+
T Consensus 883 ~SQkDPKEYLPfL~~L~~--l~~~~rry--~ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 883 QSQKDPKEYLPFLQELQK--LPPLYRRY--KID--DHLKRYEKALRHLSA 926 (928)
T ss_pred HhccChHHHHHHHHHHHh--CChhheee--eHh--hhhCCHHHHHHHHHh
Confidence 456778888888888776 33332222 122 347889999887654
No 474
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.75 E-value=8.2e+02 Score=27.84 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=8.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 000837 1164 QEGRTTEAERLLISMV 1179 (1262)
Q Consensus 1164 ~~g~~~~A~~l~~~~~ 1179 (1262)
..|++++|...+-+++
T Consensus 258 ~~~ry~da~~r~yR~~ 273 (380)
T TIGR02710 258 TQGRYDDAAARLYRAL 273 (380)
T ss_pred HccCHHHHHHHHHHHH
Confidence 4566666655444443
No 475
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.48 E-value=8.9e+02 Score=25.94 Aligned_cols=103 Identities=15% Similarity=0.063 Sum_probs=49.6
Q ss_pred hhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHH----HHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 000837 712 HKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHAL----VEELLQQGCNLDQMAYSHLIRGLCKEKKFS 787 (1262)
Q Consensus 712 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~----l~~~~~~g~~~d~~~~~~li~~~~~~~~~~ 787 (1262)
+++++++|++++.. ....+.+.|+...|.++ ++-+.+.+.+.|......++..+.....-+
T Consensus 2 ~~kky~eAidLL~~---------------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS---------------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHH---------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 46778888776544 33445556655444443 333444566666666566665555433211
Q ss_pred -HHHHHHHHHhh---CC--CCCChhcHHhHHHHHHhcCCHHHHHHHHH
Q 000837 788 -VAFKMLDSMLD---KN--MAPCLDVSVSLIPQLFRTGRLEKAVALRE 829 (1262)
Q Consensus 788 -~A~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 829 (1262)
+-.++.+.+.+ .+ ..-+......+...|.+.|++.+|+..|-
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 12222232221 11 22345566667777778887777776554
No 476
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.47 E-value=7.4e+02 Score=24.99 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.5
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 000837 470 CKARQFDEAKIMVSEMAKS 488 (1262)
Q Consensus 470 ~~~g~~~~A~~l~~~m~~~ 488 (1262)
.+.|+++.|.+.++-|.+.
T Consensus 132 l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 132 LRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4568999999999888764
No 477
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.36 E-value=1.5e+02 Score=31.97 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 000837 386 RPDEIT-FGILIGWTCREGNLRSALVFFSEILSRGLN 421 (1262)
Q Consensus 386 ~p~~~t-y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 421 (1262)
.||..+ |+..|....+.|++++|+.+++|..+.|..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344443 346666666666666666666666666654
No 478
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=23.79 E-value=9.6e+02 Score=26.05 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=40.8
Q ss_pred HHHHhhCChhHHHHHH-HHHHHCCCCCCH----HhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000837 362 HTLCSIFGSKRADLFV-QELEHSGFRPDE----ITFGILIGWTCREGNLRS-ALVFFSEILSRGLNPDVHTYNSLISGMF 435 (1262)
Q Consensus 362 ~~~~~~g~~~~A~~~~-~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~y~~li~~~~ 435 (1262)
.-..+...+++..... ++|.+.++ |+. +.|..++++--.+.+-+. |...+. ...+|..|+.++|
T Consensus 263 ~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~ 332 (412)
T KOG2297|consen 263 EQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFC 332 (412)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHh
Confidence 3334444555655544 45666664 443 247777776533322111 122222 3567899999999
Q ss_pred hcCChHHHH
Q 000837 436 KEGMSKHAK 444 (1262)
Q Consensus 436 ~~g~~~~A~ 444 (1262)
..|+.+-+.
T Consensus 333 s~g~sEL~L 341 (412)
T KOG2297|consen 333 SQGQSELEL 341 (412)
T ss_pred cCChHHHHH
Confidence 999876654
No 479
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.92 E-value=2.7e+02 Score=28.23 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 000837 421 NPDVHTYNSLISGMFKEGMSKHAKEILDEMVN 452 (1262)
Q Consensus 421 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 452 (1262)
.|+..+|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555444
No 480
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.67 E-value=7.8e+02 Score=29.54 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHHHHcCCC
Q 000837 263 KVTHLAFRVCVDMVVMGNN 281 (1262)
Q Consensus 263 ~~~~~A~~~~~~m~~~g~~ 281 (1262)
++.+.++.++++|...|..
T Consensus 259 ~d~~~~l~~~~~l~~~g~~ 277 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVD 277 (509)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 5556666666666666644
No 481
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.49 E-value=1.2e+03 Score=26.80 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=44.8
Q ss_pred hHHhhhhhhccCCCHHHHHHHHHHHhhcCC-----CCC-----hHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 529 FFDNLGNGLYLDTDLDEYERKLSKIIEDSM-----IPN-----FNSLIKMVHARGNLKAALLLVDEMV 586 (1262)
Q Consensus 529 ~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~-----~~~-----~~~li~~~~~~g~~~~A~~~~~~m~ 586 (1262)
+...+++..+..||+..|.+.++.+--... .|. +..+.-+|...+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999887643211 122 6778889999999999999998874
No 482
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.45 E-value=7.8e+02 Score=29.23 Aligned_cols=207 Identities=8% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHH--hcCCHHHHHHH
Q 000837 269 FRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVF--NEVAYGYC--EKKDFEDLLSF 344 (1262)
Q Consensus 269 ~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~--~~g~~~~A~~~ 344 (1262)
.++.+.+++.|..+...+......+-.+....--...-.++.+.+.+.|..++.... .+.+...+ ..|+.+-..-+
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~L 127 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYL 127 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHH
Q ss_pred HHHc-CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 000837 345 FTEM-KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITF--GILIGWTCREGNLRSALVFFSEILSRGLN 421 (1262)
Q Consensus 345 ~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 421 (1262)
++.- ..........+.+...+..|. .-.++++.+.+.|..++...- .+.+...+..| -.++.+.+.+.|..
T Consensus 128 l~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ga~ 201 (480)
T PHA03100 128 LDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDNGAD 201 (480)
T ss_pred HHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHcCCC
Q ss_pred CCHHHH--------HHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 000837 422 PDVHTY--------NSLISGMFKEGMSKHAKEILDEMVNRGITPSLST--YRILLAGYCKARQFDEAKIMVS 483 (1262)
Q Consensus 422 p~~~~y--------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~l~~ 483 (1262)
++.... ...+...+..|. ...++++.+.+.|..++... -.+-+...+..|..+-+..+++
T Consensus 202 ~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~ 271 (480)
T PHA03100 202 INAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD 271 (480)
T ss_pred ccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
No 483
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.26 E-value=9.1e+02 Score=25.22 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=9.4
Q ss_pred HHHHHHhhCChhHHHHHHHH
Q 000837 360 IIHTLCSIFGSKRADLFVQE 379 (1262)
Q Consensus 360 li~~~~~~g~~~~A~~~~~~ 379 (1262)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444444444444443
No 484
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.00 E-value=1e+03 Score=26.10 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 290 FHDVVRLLCRDRKIQESRNLVRKAMA 315 (1262)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 315 (1262)
-...++.+...|++..|.+++.+..+
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445556666777777766666543
No 485
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=21.74 E-value=96 Score=28.84 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=21.3
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChhhH
Q 000837 1197 YSLENNLGKASELMQAMQQSGYSPDFSTH 1225 (1262)
Q Consensus 1197 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 1225 (1262)
+...|....|..+|++|+++|-.||+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPddW~~ 133 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDDWDA 133 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCccHHH
Confidence 45667777788888888888877776643
No 486
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.69 E-value=1.1e+03 Score=25.98 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=58.5
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 000837 396 IGWTC-REGNLRSALVFFSEILSRGL----NPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYC 470 (1262)
Q Consensus 396 i~~~~-~~g~~~~A~~~~~~m~~~g~----~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 470 (1262)
+...| ..+-.++|.+.|.+....+. ..+......++...++.|..+....+++..... ++......++.+++
T Consensus 136 ~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa 212 (324)
T PF11838_consen 136 LSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALA 212 (324)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHT
T ss_pred HHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhh
Confidence 45545 12235678888888876421 335556666777777888866666666666653 46777888999998
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 000837 471 KARQFDEAKIMVSEMAKSG 489 (1262)
Q Consensus 471 ~~g~~~~A~~l~~~m~~~~ 489 (1262)
...+.+...++++.....+
T Consensus 213 ~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 213 CSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp T-S-HHHHHHHHHHHHCTS
T ss_pred ccCCHHHHHHHHHHHcCCc
Confidence 8888888888888877744
No 487
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.25 E-value=1.4e+03 Score=28.33 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=8.0
Q ss_pred cCChHHHHHHHHHHH
Q 000837 191 VGMLKEVELLLLAME 205 (1262)
Q Consensus 191 ~~~~~~a~~~l~~~~ 205 (1262)
.|....|.++++...
T Consensus 216 ~Gs~RdALsLLdQai 230 (700)
T PRK12323 216 QGSMRDALSLTDQAI 230 (700)
T ss_pred CCCHHHHHHHHHHHH
Confidence 355555655555433
No 488
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=20.22 E-value=6.9e+02 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=18.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHH
Q 000837 465 LLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGF 504 (1262)
Q Consensus 465 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~ 504 (1262)
+..-+...|.++.|.+++++ +.|+..-.++...+...+
T Consensus 124 laadhvAAGsFetAm~LLnr--QiGivnF~PLk~~Fl~~y 161 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNR--QIGIVNFEPLKPLFLEVY 161 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHH--HC-B---GGGHHHHHHHH
T ss_pred cHHHHHHhCCHHHHHHHHHH--HhCccccHHHHHHHHHHH
Confidence 34456677777777777765 334433334444444444
No 489
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.12 E-value=1.4e+03 Score=27.11 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=19.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 000837 388 DEITFGILIGWTCREGNLRSALVFFSEILSRGLNPD 423 (1262)
Q Consensus 388 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 423 (1262)
+...+..++.+....+....|+.++++|.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 334444455544444444566666666666665544
No 490
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=20.09 E-value=1.6e+02 Score=31.79 Aligned_cols=46 Identities=20% Similarity=0.079 Sum_probs=33.1
Q ss_pred CCCccc-HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 000837 351 TPDVLA-GNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILI 396 (1262)
Q Consensus 351 ~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li 396 (1262)
.||..+ ||.-|..-.+.|++++|+.+++|.++.|+.--..||-..+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 344444 5678888888899999999999999888765555554433
Done!