Query 000837
Match_columns 1262
No_of_seqs 684 out of 5024
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 21:51:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000837.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_22-26//hhsearch_pdb/000837hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 311.0 42.1 252 948-1234 342-595 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 310.8 40.3 60 426-487 274-333 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 236.8 23.8 184 289-472 28-223 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 236.3 23.6 185 307-491 10-207 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 207.3 47.2 381 812-1237 6-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 205.3 45.4 161 947-1112 171-332 (388)
7 1xi4_A Clathrin heavy chain; a 1.0 1 1 198.9 94.4 765 219-1070 487-1375(1630)
8 1xi4_A Clathrin heavy chain; a 1.0 1 1 196.9 87.1 87 327-419 487-573 (1630)
9 2gw1_A Mitochondrial precursor 1.0 1 1 194.8 38.6 73 1154-1229 414-489 (514)
10 2gw1_A Mitochondrial precursor 1.0 1 1 185.0 40.5 25 948-972 307-331 (514)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=311.02 Aligned_cols=252 Identities=12% Similarity=0.061 Sum_probs=105.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHH
Q ss_conf 99999999943998899999999987998889765999999966279954799999999978998783019999999992
Q 000837 948 FNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCE 1027 (1262)
Q Consensus 948 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 1027 (1262)
+..++..+...|++++|..+++++.... +.+..++..++..|.+.|++++|..+|+++.+.. +.+...+..++.+|.+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAI 419 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_conf 9999999998277779999999998518-3547999999999998356999999999998729-7778999999999997
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 19955899999999873999779999999999994599878999999987599997876899999999925996899999
Q 000837 1028 VGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDL 1107 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 1107 (1262)
.|++++|.++++++.+.+ +.+..+|..++.+|...|++++|..+|+++.+.. +.+..+|..++..|.+.|++++|.++
T Consensus 420 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 577799999999999868-1343899999999998579999999999999848-88767999999999981899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99998689997878799997005992479999999987999988--9889999999995399879999999999789999
Q 000837 1108 LNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPS--MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP 1185 (1262)
Q Consensus 1108 ~~~~~~~g~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~ 1185 (1262)
++++.+.. | +.+..|+ ..+|..++.+|.+.|++++|...++++.+.+ +.
T Consensus 498 ~~~~~~~~--~--------------------------~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 498 FQNALLLV--K--------------------------KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp HHHHHHHH--H--------------------------HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred HHHHHHHH--H--------------------------CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC
T ss_conf 99999853--2--------------------------3454535499999999999998047999999999999738-99
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999999999409976899999999983999996639999999512
Q 000837 1186 TQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1186 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~~l~~l~~ 1234 (1262)
++.+|..++.+|...|++++|...++++.+ ..|++...+..++++|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHH
T ss_conf 738999999999981789999999999972--08887489999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=310.77 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 89999999993499579999999998699866999999999999980998899999999988
Q 000837 426 TYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487 (1262)
Q Consensus 426 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 487 (1262)
+|+.++..|.+.|++++|.++|+++.+. .++..+|..++..|.+.|++++|..+++++.+
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999980731399999999876438--83099999999999984689999999999997
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=236.82 Aligned_cols=184 Identities=14% Similarity=0.173 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHC---CCCCCCCC
Q ss_conf 2999999999239989999999999988999889899999999994299---------89999999982---87999110
Q 000837 289 SFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKD---------FEDLLSFFTEM---KCTPDVLA 356 (1262)
Q Consensus 289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~---~~~p~~~~ 356 (1262)
.++.+|..|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+. ++.|.++|++| +..||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999930894489999999997799978976999999999439989999999999859998788789999999993
Q 000837 357 GNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFK 436 (1262)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~ 436 (1262)
||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999846977889999999997289886111048999999888999999999999862999999999999999853
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 499579999999998699866999999999999980
Q 000837 437 EGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKA 472 (1262)
Q Consensus 437 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 472 (1262)
.|++++|.+++++|.+.|+.|+..||+.++..|+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 898999999999999948996999999999998307
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=236.33 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=99.9
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHCC---------HHHH
Q ss_conf 9999999988999889-89999999999429989999999982---879991109999999993089---------4489
Q 000837 307 RNLVRKAMAFGLEPSS-LVFNEVAYGYCEKKDFEDLLSFFTEM---KCTPDVLAGNRIIHTLCSIFG---------SKRA 373 (1262)
Q Consensus 307 ~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~li~~~~~~g~---------~~~A 373 (1262)
+.+.+++.+.+....+ .+++.+|.+||+.|++++|.++|++| |..||..+||+||.+|++.+. .++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHH
T ss_conf 99999999826668979999999999985989999999999999818998783999999999857830433321249999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999779997897699999999943998999999999985999878878999999999349957999999999869
Q 000837 374 DLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR 453 (1262)
Q Consensus 374 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 453 (1262)
.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999808999899999999999846977889999999997289886111048999999888999999999999862
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98669999999999999809988999999999885995
Q 000837 454 GITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLI 491 (1262)
Q Consensus 454 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 491 (1262)
|+.||..||++||.+|++.|+.++|.+++++|.+.+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ 207 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQ 207 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999985389899999999999994899
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=207.34 Aligned_cols=381 Identities=16% Similarity=0.100 Sum_probs=236.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999369988999999998524997507868999999861199999999999999789877978699999999941998
Q 000837 812 IPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNL 891 (1262)
Q Consensus 812 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 891 (1262)
...+.+.|++++|...+..+....|. +...+..+...+...|++++|...++...... +.+..++..+...+...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 99998779999999999999984978-89999999999998689999999999997619-78669999999999877999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 89999999999879766854199999999944992149999999971999888210999999999439988999999999
Q 000837 892 RKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDEL 971 (1262)
Q Consensus 892 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 971 (1262)
++|...|+.+++..+ .+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999987496-539999999999998589999999999999759-896899999999999846899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 87998889765999999966279954799999999978998783019999999992199558999999998739997799
Q 000837 972 QENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSI 1051 (1262)
Q Consensus 972 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 1051 (1262)
.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++...... +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
T ss_conf 8729-8978999999999998599999999999998559-8867999999999998578999999999998529-68789
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 999999999945998789999999875999978-7689999999992599689999999998689997878799997005
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTC 1130 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 1130 (1262)
++..++..+...|++++|+..|+++.+. .|+ ..++..++..+...|++++|.+.++++.+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------- 300 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---------------- 300 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
T ss_conf 9999999999868899999999999864--9998899999999999869979999999999864----------------
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99247999999998799998898899999999953998799999999997899999999999999999409976899999
Q 000837 1131 NKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELM 1210 (1262)
Q Consensus 1131 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 1210 (1262)
.+.+...+..++..+...|++++|...++++.+. .+.+...+..++..|...|++++|...+
T Consensus 301 -----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 301 -----------------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf -----------------9444999999999999848999999999999860-9873999977999999868889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999983999996639999999512665
Q 000837 1211 QAMQQSGYSPDFSTHWSLISNLRNSND 1237 (1262)
Q Consensus 1211 ~~~~~~g~~p~~~~~~~~l~~l~~~~~ 1237 (1262)
+++.+ ..|+....+..++.++...|
T Consensus 363 ~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHCC
T ss_conf 99986--19997899985999998745
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=205.32 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHCHHHHHHHH
Q ss_conf 0999999999439988999999999879988897659999999662799547999999999789987-830199999999
Q 000837 947 IFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCL 1025 (1262)
Q Consensus 947 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 1025 (1262)
.|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++.... .| +...+..+..++
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
T ss_conf 999999999985999999999999985598-86799999999999857899999999999852--968789999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 92199558999999998739997799999999999945998789999999875999978768999999999259968999
Q 000837 1026 CEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAV 1105 (1262)
Q Consensus 1026 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 1105 (1262)
...|++++|...++.+.+.. +.+..++..++..+...|++++|...++++.+. .+.+..++..++..+...|++++|.
T Consensus 248 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98688999999999998649-998899999999999869979999999999864-9444999999999999848999999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q 000837 1106 DLLNIML 1112 (1262)
Q Consensus 1106 ~~~~~~~ 1112 (1262)
+.++++.
T Consensus 326 ~~~~~al 332 (388)
T 1w3b_A 326 RLYRKAL 332 (388)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999998
No 7
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=198.90 Aligned_cols=765 Identities=12% Similarity=0.085 Sum_probs=315.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999991699558999999955289855832099999999944945689999999998188777887142999999999
Q 000837 219 NLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLC 298 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~li~~~~ 298 (1262)
..+.++++.|++++++..-+ +.|..|+ |..+++.+.+. +++.|..+-..+.... +.....+.++..+.
T Consensus 487 Kvi~~l~~~gq~~ki~~Y~~---~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~-----~p~~d~~~ivd~f~ 554 (1630)
T 1xi4_A 487 KVIQCFAETGQVQKIVLYAK---KVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE-----EPLADITQIVDVFM 554 (1630)
T ss_pred HHHHHHHHHCCHHHHHHHHH---CCCCCCC---HHHHHHHHHHC-CHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHH
T ss_conf 99999999688879999986---3399945---99999998522-9688999999986189-----98658999999998
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 23998999999999998899988989999999999429989999999982879991109999999993089448999999
Q 000837 299 RDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQ 378 (1262)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 378 (1262)
..+...++..++-+..+.+-+.+....+.++..-.. +.+.-|..++..= --...-+..+...+-+.|-+.+|++.+.
T Consensus 555 ~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~-~~pqvadail~~~--~fthyd~~~IA~LCE~aGl~qrale~y~ 631 (1630)
T 1xi4_A 555 EYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLM-HAPQVADAILGNQ--MFTHYDRAHIAQLCEKAGLLQRALEHFT 631 (1630)
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHCC--CCCCCCHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 568599999999999828981121476889987511-4614899998548--6550368999999997680999998647
Q ss_pred HHHHC--CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--
Q ss_conf 99977--999-7897699999999943998999999999985999878878999999999349957999999999869--
Q 000837 379 ELEHS--GFR-PDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR-- 453 (1262)
Q Consensus 379 ~m~~~--g~~-p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-- 453 (1262)
.+.+- -+. .....-.-++. |...-..+.+++++.+|...+++.+...--.+..-|...=-.+...++|++....
T Consensus 632 d~~dikR~~~~~~~~~~~~l~~-~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~eg 710 (1630)
T 1xi4_A 632 DLYDIKRAVVHTHLLNPEWLVN-YFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEG 710 (1630)
T ss_pred CHHHHHHHHHCCCCCCHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
T ss_conf 8888788862567688799999-984599889999999999986863102214379888763287999999997253235
Q ss_pred ---------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHCCCC---CCCCCCH------HHHHH
Q ss_conf ---------98669999999999999809988999999999------------885995---4686630------24557
Q 000837 454 ---------GITPSLSTYRILLAGYCKARQFDEAKIMVSEM------------AKSGLI---ELSSLED------PLSKG 503 (1262)
Q Consensus 454 ---------g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m------------~~~~~~---~~~~~~~------~~~~~ 503 (1262)
....|.......|.+.++.|+..+..++.++- .+.... |.-.+.+ .+..-
T Consensus 711 l~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~y 790 (1630)
T 1xi4_A 711 LFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLY 790 (1630)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHH
T ss_conf 89987722665678189999999999837730156884468878999999998637799987710131453658999999
Q ss_pred HHHCCCCHHHHH-HCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 785089811232-1234666887256688564220158997899999999842378887489999999539989999999
Q 000837 504 FMILGLNPSAVR-LRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLV 582 (1262)
Q Consensus 504 ~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 582 (1262)
....++...... +.+-+++..|... +..+....+-+-...++..+ .+.. ....|+...-++++..--+.++
T Consensus 791 Ly~n~~~~~ie~yv~~vnp~~~p~Vv-----g~lld~d~~e~~ik~ll~~v--~~~~-~~~~lv~~~ekrnrLkll~p~L 862 (1630)
T 1xi4_A 791 LYRNNLQKYIEIYVQKVNPSRLPVVI-----GGLLDVDCSEDVIKNLILVV--RGQF-STDELVAEVEKRNRLKLLLPWL 862 (1630)
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCHHH-----HHHHCCCCCHHHHHHHHHHH--CCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98568415799997345875443166-----53306888999999999985--1589-9799999999887798889999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCHHH-------------------------------------------------
Q ss_conf 9998718889999999999999807983489-------------------------------------------------
Q 000837 583 DEMVRWGQELSLSVFSALVKGLCASRSHIKA------------------------------------------------- 613 (1262)
Q Consensus 583 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~------------------------------------------------- 613 (1262)
+.-...|. .++.++|+|.+.|...+...+.
T Consensus 863 E~~~~~g~-~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k 941 (1630)
T 1xi4_A 863 EARIHEGC-EEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFK 941 (1630)
T ss_pred HHHHHCCC-CCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHCCHHHH
T ss_conf 99986789-88899999999985368998898441675238999989875282067787404688499999884245699
Q ss_pred --------------HHH-----------HHHHHHHHCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--CCC
Q ss_conf --------------999-----------9998223019--99968899999999803976889999999766599--889
Q 000837 614 --------------CTG-----------LLEKMPKLAN--KLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGL--TIE 664 (1262)
Q Consensus 614 --------------a~~-----------l~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~ 664 (1262)
-.. +.+......+ ..++.-....+.+|...|.+.+|++++++..-.+- .-+
T Consensus 942 ~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 942 SLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred HHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999998168899999856781889999999998524010697774799999996989899999999997378755454
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 76699999999823987569999999973598899022898999976107447689999998730588870479999999
Q 000837 665 NESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEK 744 (1262)
Q Consensus 665 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 744 (1262)
...-+.++.+..+. +........+.... .....+...+...|.+++|..+|++.. .+...+..
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~---------~~~~A~~V 1084 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFD---------VNTSAVQV 1084 (1630)
T ss_pred HHHHHHHHHHHHHH-CHHHHHHHHHHHHH-------CCHHHHHHHHHHCCCHHHHHHHHHHCC---------CHHHHHHH
T ss_conf 78999999999985-80559999987412-------369999999985898999999999808---------87999999
Q ss_pred -HHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHH
Q ss_conf -7721982109999999996399989664999999999219978999999998547999891018859999993699889
Q 000837 745 -LCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEK 823 (1262)
Q Consensus 745 -~~~~g~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 823 (1262)
+...+.+++|.++.+.. .+..+|..+..++...|++++|+..|... .+...|..++..+.+.|++++
T Consensus 1085 Lie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1085 LIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred HHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHHHHCCCHHH
T ss_conf 999986399999999854------88879999999998479899999999835------996999999999997589999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999998524997507868999999861199999999999999789877978699999999941998899999999998
Q 000837 824 AVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIR 903 (1262)
Q Consensus 824 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 903 (1262)
|.+.+....+....+.. .+.++.+|.+.+++++.... .. .++...+..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~~e~~I--dt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKARESYV--ETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHHHCCCCCC--CHHHHHHHHHHCCHHHHHHH----HH---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--
T ss_conf 99999999842455422--27999999852679999999----82---788999999999998368899999999843--
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 79766854199999999944992149999999971999888210999999999439988999999999879988897659
Q 000837 904 KRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTY 983 (1262)
Q Consensus 904 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 983 (1262)
..|..++.++++.|+++.|.+.+.+. .+..+|..+..++...|++..|........ .+...+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 1283 (1630)
T ss_pred -------HHHHHHHHHHHHHCCHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHH
T ss_conf -------57999999999707899999999983------898789999999863568899999877553-----288999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHCHHHHHHHHHH--CCCHHHHHHHHHHHHHCCCC------CCHHHHH
Q ss_conf 999999662799547999999999789987-83019999999992--19955899999999873999------7799999
Q 000837 984 NFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCE--VGELGKSLELSQEMRLKGLV------HDSIVQN 1054 (1262)
Q Consensus 984 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~------~~~~~~~ 1054 (1262)
..++..|...|.+++|+.+++..+.. .+ ....|..+..+|++ .+++.++.++|..-.+ ++ .+...|.
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWA 1359 (1630)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH
T ss_conf 99999999858999999999988566--82376899999999974898999999999998406--526767777787899
Q ss_pred HHHHHHHHCCCHHHHH
Q ss_conf 9999999459987899
Q 000837 1055 AIAEGLLSRGKLQEAE 1070 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~ 1070 (1262)
.++..|.+.|+++.|.
T Consensus 1360 elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHCCCHHHHH
T ss_conf 9999999416099999
No 8
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=196.89 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999994299899999999828799911099999999930894489999999997799978976999999999439989
Q 000837 327 EVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLR 406 (1262)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 406 (1262)
-++.++|+.|.++.+...-++.+..|| |..|+..+.+. +++.|.++...+.... |.....+.++..+...+.+.
T Consensus 487 Kvi~~l~~~gq~~ki~~Y~~~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq 560 (1630)
T 1xi4_A 487 KVIQCFAETGQVQKIVLYAKKVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQ 560 (1630)
T ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCCC---HHHHHHHHHHC-CHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCCHH
T ss_conf 999999996888799999863399945---99999998522-9688999999986189--98658999999998568599
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999998599
Q 000837 407 SALVFFSEILSRG 419 (1262)
Q Consensus 407 ~A~~~~~~m~~~g 419 (1262)
++..++-+..+.+
T Consensus 561 ~~t~fLld~lk~n 573 (1630)
T 1xi4_A 561 QCTAFLLDALKNN 573 (1630)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998289
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=194.76 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 89999999995---39987999999999978999999999999999994099768999999999839999966399999
Q 000837 1154 TWHVLVHKLCQ---EGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLI 1229 (1262)
Q Consensus 1154 ~~~~l~~~~~~---~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~~l 1229 (1262)
.+..++.++.. .|++++|...++++.+.. +.+..++..++..|...|++++|...++++.+ ..|+....+..+
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~ 489 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_conf 99999999866332588899999999998758-55589999999999982579999999999987--661468899999
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=184.98 Aligned_cols=25 Identities=8% Similarity=-0.096 Sum_probs=8.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999994399889999999998
Q 000837 948 FNILVFHLMSSGNIFHVKRVLDELQ 972 (1262)
Q Consensus 948 ~~~l~~~~~~~g~~~~A~~~~~~m~ 972 (1262)
+..+...+...|++++|...+++..
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999999998077999999999998
Done!