BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000838
(1262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 21/178 (11%)
Query: 707 EMKLQGVLED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITG 762
E+KL+ +++ LN ++ + G AL+G SG+GK+TL+ +AG + T G I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 763 SIK-ISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP--EVDSETRKMF 819
K ++ P K R G QN P +TV++++AF LR AP E+D + R
Sbjct: 63 DEKDVTELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR--- 115
Query: 820 IEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
E+ +++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 116 --EVAKMLHIDKL---LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 48/228 (21%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHIGEM 62
LLGP SGK+T L +AG + SG++ ++ ++ E P+ R + Q+ M
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHM 90
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV + +AF +EL + P +ID ++ VA
Sbjct: 91 TVYKNIAFP-------------LELRK-------APREEIDKKVREVA------------ 118
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
K+L +D + +SGGQ++RV +V + +DE + LD+ +
Sbjct: 119 --KMLHIDKLL-----NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171
Query: 183 IVNCLRQNIHINSETAVIS--LLQPAPETYNLFDDIILLSDGQIVYQG 228
+ L++ + E + + + E + D I ++ +G+I+ G
Sbjct: 172 VRAELKR---LQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVG 216
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L V+ F G + ++G +G+GKTTL+ +LAG G I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 780 SGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
GY QN TV E +AFS L + +SE RK I++++ELV L G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELV-------GLSG 132
Query: 839 LPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
L + LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 897 VVCTIHQ 903
++ H+
Sbjct: 193 IILVTHE 199
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 47/234 (20%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH-DNHIGE 61
+++G SGKTT L LAG L +G + +G F+ ++ Y+ Q+ + I
Sbjct: 41 VVVGKNGSGKTTLLKILAG----LLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIG 96
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
TV E +AFS G+ E+ +R K
Sbjct: 97 ATVEEDVAFSLEIMGLDES-----EMRKRIK----------------------------- 122
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
KVL L + + D + +SGGQK+R+ M+ + +DE + LD +
Sbjct: 123 ---KVLELVGLSGLAAADPL--NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 182 QIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
+I L + +E I L+ E + D I+ +S+G I + G E +E
Sbjct: 178 EIFQVLES---LKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKH 773
K+ ++GVS + G AL+G SG GKTT + +LAG + T G I + ++ P K+
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEE---IMELVELN 830
R G QN P +TV E++AF R + + E R + I I L++
Sbjct: 75 ----REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
P + LS Q++R+ +A LV P ++ DEP S LDA I+ +++
Sbjct: 131 PTQ-----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 97/258 (37%), Gaps = 64/258 (24%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHIGEM 62
LLGP GKTT LL LAG + SG + ++ + + P+ R + Q+ M
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHM 90
Query: 63 TVRETLAFSARCQGVGTR--YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
TV E +AF R + + ++E+AR+
Sbjct: 91 TVFENIAFPLRARRISKDEVEKRVVEIARK------------------------------ 120
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
L +DN D +SGGQ++RV +V + DE + LD++
Sbjct: 121 ------LLIDNLL-----DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 181 FQIVNCLRQNI-HINSETAVIS--LLQPAPETYNLFDDIILLSDGQIV-YQGPRELVLEF 236
+R I H+ E + S + E + I + + G++V Y P E+
Sbjct: 170 M----IMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV---- 221
Query: 237 FESMGFKCPQRKGVADFL 254
+ P+ VA F+
Sbjct: 222 -----YDSPKNMFVASFI 234
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGSIKISGYPK 771
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 772 KHETFARIS--GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
T R G+ Q P +T E++ + + E R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 830 NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
+ N LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 890 -TVDTGRTVVCTIHQPSIDIF 909
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 38/207 (18%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPKKH 773
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 774 ET---FARISGYCEQNDI------------HSPFVTVHESLAFSAWLRLAPEVDSETRKM 818
R G Q+++ +P ++V E + ++A L A + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 879 AAAIVMRTVRNTVDTGRTVVCTIHQPS 905
+ ++MR + + + GRTV+ H+ S
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS 201
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
G+SGGQ++R+ +V + DE ++ LD ++ + + +N+H + + ++
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVIII 196
Query: 204 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
T D II++ G+IV QG + +L ES+
Sbjct: 197 AHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 38/207 (18%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPKKH 773
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 774 ET---FARISGYCEQNDI------------HSPFVTVHESLAFSAWLRLAPEVDSETRKM 818
R G Q+++ +P ++V E + ++A L A + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 879 AAAIVMRTVRNTVDTGRTVVCTIHQPS 905
+ ++MR + + + GRTV+ H+ S
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHRLS 199
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
G+SGGQ++R+ +V + DE ++ LD ++ + + +N+H + + ++
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVIII 194
Query: 204 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
T D II++ G+IV QG + +L ES+
Sbjct: 195 AHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 38/207 (18%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPKKH 773
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 774 ET---FARISGYCEQNDI------------HSPFVTVHESLAFSAWLRLAPEVDSETRKM 818
R G Q+++ +P ++V E + ++A L A + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 879 AAAIVMRTVRNTVDTGRTVVCTIHQPS 905
+ ++MR + + + GRTV+ H+ S
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS 205
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
G+SGGQ++R+ +V + DE ++ LD ++ + + +N+H + + ++
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVIII 200
Query: 204 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
T D II++ G+IV QG + +L ES+
Sbjct: 201 AHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
+N ++ + G L+G SG GKTT + ++AG T G I G ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
+ Q+ P +TV+E++AF ++ P+ + + R + E++++ EL L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
P LS QR+R+ +A +V P ++ MDEP S LDA+
Sbjct: 137 RYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 122/342 (35%), Gaps = 93/342 (27%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHIGE 61
+LLGP GKTT L +AG + + GR+ + ++ P+ R + + Q
Sbjct: 41 VLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 97
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
MTV E +AF + + P +ID ++ A Q ++
Sbjct: 98 MTVYENIAFPLKIKKF--------------------PKDEIDKRVRWAAELLQIEELLNR 137
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
Y + +SGGQ++RV +V + MDE + LD+
Sbjct: 138 YPAQ-------------------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 178
Query: 182 QI---VNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLE-- 235
+ + L+Q + + + I + E + D I +++ GQ++ G P E+ L
Sbjct: 179 AMRAEIKKLQQKLKVTT----IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234
Query: 236 -----------------------FFESMGFKCPQRKGVADFLQEVTSKK----------- 261
+ E GF+ + + D L++ K
Sbjct: 235 SVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQDLMDLLKDYVGKTVLFGIRPEHMT 294
Query: 262 -DQQQYWAHKEIPYRFITVQEFAEAFKS---FHVGQKLADEL 299
+ AH + R I +F EA + HV K DEL
Sbjct: 295 VEGVSELAHMKRTARLIGKVDFVEALGTDTILHV--KFGDEL 334
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 15/161 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
+N ++ + G L+G SG GKTT + ++AG T G I G ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
+ Q+ P +TV+E++AF ++ P+ + + R + E++++ EL L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
P LS QR+R+ +A +V P ++ MDEP S LDA+
Sbjct: 138 RYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 122/342 (35%), Gaps = 93/342 (27%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHIGE 61
+LLGP GKTT L +AG + + GR+ + ++ P+ R + + Q
Sbjct: 42 VLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 98
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
MTV E +AF + + P +ID ++ A Q ++
Sbjct: 99 MTVYENIAFPLKIKKF--------------------PKDEIDKRVRWAAELLQIEELLNR 138
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
Y + +SGGQ++RV +V + MDE + LD+
Sbjct: 139 YPAQ-------------------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 179
Query: 182 QI---VNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLE-- 235
+ + L+Q + + + I + E + D I +++ GQ++ G P E+ L
Sbjct: 180 AMRAEIKKLQQKLKVTT----IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 235
Query: 236 -----------------------FFESMGFKCPQRKGVADFLQEVTSKK----------- 261
+ E GF+ + + D L++ K
Sbjct: 236 SVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQDLMDLLKDYVGKTVLFGIRPEHMT 295
Query: 262 -DQQQYWAHKEIPYRFITVQEFAEAFKS---FHVGQKLADEL 299
+ AH + R I +F EA + HV K DEL
Sbjct: 296 VEGVSELAHMKRTARLIGKVDFVEALGTDTILHV--KFGDEL 335
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 38/207 (18%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPKKH 773
D V+L+ ++ + + G + ++G +G+GK+TL ++ YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 774 ET---FARISGYCEQNDI------------HSPFVTVHESLAFSAWLRLAPEVDSETRKM 818
R G Q+++ +P ++V E + ++A L A + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 879 AAAIVMRTVRNTVDTGRTVVCTIHQPS 905
+ ++MR + + + GRTV+ H+ S
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS 201
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
G+SGGQ++R+ +V + DE ++ LD ++ + + +N+H + + ++
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVIII 196
Query: 204 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
T D II++ G+IV QG + +L ES+
Sbjct: 197 AHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGSIKISGYPK 771
E+ + L V+ + G ++MG SG+GK+T+++++ + T G + +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 772 KHETFARIS--GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
T R G+ Q P +T E++ + + E R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 830 NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
+ N LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 890 -TVDTGRTVVCTIHQPSIDIF 909
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 38/207 (18%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPKKH 773
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 774 ET---FARISGYCEQNDI------------HSPFVTVHESLAFSAWLRLAPEVDSETRKM 818
R G Q+++ +P ++V E + ++A L A + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ ++VG G GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 879 AAAIVMRTVRNTVDTGRTVVCTIHQPS 905
+ ++MR + + + GRTV+ H+ S
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS 205
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
G+SGGQ++R+ +V + D+ ++ LD ++ + + +N+H + + ++
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDQATSALD----YESEHVIMRNMHKICKGRTVIII 200
Query: 204 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
T D II++ G+IV QG + +L ES+
Sbjct: 201 AHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 20/205 (9%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YITGSIKISGYPKK 772
K+V L+ V+ G ++G SGAGKTT M ++AG TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFS-AWLRLAPEVDSETRKMFIEEIMELVELNP 831
R G Q P +T E++AF ++++ E E RK +EE+ ++++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDIH- 131
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVR 888
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 132 --HVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 889 NTVDTGRTVVCTIHQPSIDIFESFD 913
+ + G T++ H P+ DIF D
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIAD 209
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 38/200 (19%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPKKH 773
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 774 ET---FARISGYCEQNDI------------HSPFVTVHESLAFSAWLRLAPEVDSETRKM 818
R G Q+++ +P ++V E + ++A L A + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 879 AAAIVMRTVRNTVDTGRTVV 898
+ ++MR + + + GRTV+
Sbjct: 174 SEHVIMRNM-HKICKGRTVI 192
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
G+SGGQ++R+ +V + DE ++ LD ++ + + +N+H + + ++
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVIII 194
Query: 204 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
T D II++ G+IV QG + +L ES+
Sbjct: 195 AARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 38/200 (19%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPKKH 773
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 774 ET---FARISGYCEQNDI------------HSPFVTVHESLAFSAWLRLAPEVDSETRKM 818
R G Q+++ +P ++V E + ++A L A + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ ++VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 879 AAAIVMRTVRNTVDTGRTVV 898
+ ++MR + + + GRTV+
Sbjct: 180 SEHVIMRNM-HKICKGRTVI 198
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
G+SGGQ++R+ +V + DE ++ LD ++ + + +N+H + + ++
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHKICKGRTVIII 200
Query: 204 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
T D II++ G+IV QG + +L ES+
Sbjct: 201 AARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 20/205 (9%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YITGSIKISGYPKK 772
K+V L+ V+ G ++G SGAGKTT M ++AG TG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFS-AWLRLAPEVDSETRKMFIEEIMELVELNP 831
R G Q P +T E++AF ++++ E E RK +EE+ ++++++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKILDIH- 131
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVR 888
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V+
Sbjct: 132 --HVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 889 NTVDTGRTVVCTIHQPSIDIFESFD 913
+ + G T++ H P+ DIF D
Sbjct: 188 SRL--GVTLLVVSHDPA-DIFAIAD 209
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSIKISGYPKKHETFARISGYCEQND 787
G +G SG GK+TL+ ++AG +T G G +++ P R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 788 IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847
P ++V E+++F L A + R + E+++L L + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSG 136
Query: 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 902
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIS 172
G + VI +V + A +L D + +SGGQ++RV G +V +DE
Sbjct: 104 GAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161
Query: 173 TGLDSSTTFQI-VNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PR 230
+ LD++ Q+ + R +H +I + E L D I++L G++ G P
Sbjct: 162 SNLDAALRVQMRIEISR--LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 231 EL 232
EL
Sbjct: 220 EL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSIKISGYPKKHETFARISGYCEQND 787
G +G SG GK+TL+ ++AG +T G G +++ P R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 788 IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847
P ++V E+++F L A + R + E+++L L + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSG 136
Query: 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 902
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIS 172
G + VI +V + A +L D + +SGGQ++RV G +V +DE
Sbjct: 104 GAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161
Query: 173 TGLDSSTTFQI-VNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PR 230
+ LD++ Q+ + R +H +I + E L D I++L G++ G P
Sbjct: 162 SNLDAALRVQMRIEISR--LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 231 EL 232
EL
Sbjct: 220 EL 221
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 15/193 (7%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L G++ + G +TA++G +G GK+TL G + + G I K Y +K R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 779 IS-GYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
S G Q+ + F +V++ ++F A PE E RK ++ ++ + L+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE--DEIRKR-VDNALKRTGIEHLKDK- 139
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGR 895
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V + G
Sbjct: 140 ----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 896 TVVCTIHQPSIDI 908
T++ H IDI
Sbjct: 196 TIIIATH--DIDI 206
Score = 37.0 bits (84), Expect = 0.068, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
D LK G+++ + D+ +S GQKKRV ++V + +DE + GLD
Sbjct: 125 DNALKRTGIEH-----LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAP-ETYNLF-DDIILLSDGQIVYQG-PRELVL--E 235
+I+ L + + E + ++ + L+ D++ ++ +G+++ QG P+E+ E
Sbjct: 180 SEIMKLL---VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236
Query: 236 FFESMGFKCPQRKGVADFLQE 256
+ + P+ + + L+E
Sbjct: 237 VIRKVNLRLPRIGHLMEILKE 257
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 16/206 (7%)
Query: 702 VDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGG 758
+D+ Q K G LE +L G++ R G + ++G SG+GK+T + ++L G
Sbjct: 4 IDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 59
Query: 759 YITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAW-LRLAPEVDSETRK 817
I I + G Q P +TV ++ + +R P +E +
Sbjct: 60 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 119
Query: 818 MFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
M EL++ L+ P + LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 120 M------ELLDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 171
Query: 878 RAAAIVMRTVRNTVDTGRTVVCTIHQ 903
V+ ++ + G T+V H+
Sbjct: 172 EMVGEVLSVMKQLANEGMTMVVVTHE 197
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 145 ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQ 204
+SGGQ +RV + M DE ++ LD ++++ ++Q N ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVTH 196
Query: 205 PAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPQRKGVADFLQEV 257
+ D ++ + G I+ +G P +L F PQ + FL +V
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 241
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH---ETFARISGYC 783
+ G L+G SG GKTT + ++AG + G I K+ P+K R
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 784 EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843
Q+ P +TV++++AF LR P + + R + E++ L EL +
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP--------R 138
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 16/186 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGSIKISGYPKKHETFA 777
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G +++ P +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ----K 86
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R G QN +TV+++++F + P+ + + R + EL+ L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRFMRLESYAN 140
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 896
P + LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 141 RFP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 897 VVCTIH 902
V H
Sbjct: 199 SVFVTH 204
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 48/238 (20%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHI 59
M LLGP SGKTT L +AG L+ K G V G + + PQ R + Q+
Sbjct: 43 MVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVTDLPPQKRNVGLVFQNYALF 99
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
MTV + ++F R + V P ++D ++ +
Sbjct: 100 QHMTVYDNVSFGLREKRV--------------------PKDEMDARVREL---------- 129
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSST 179
L+ + L++ A+ + +SGGQ++RV + + DE +D+
Sbjct: 130 ----LRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 180 TFQIVNCLRQNIHINSETAVISLL--QPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
++ +RQ ++ E V S+ E + D +++L +G + G E V E
Sbjct: 181 RRELRTFVRQ---VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSIKISGYPKKHETFARISGYCEQND 787
G +G SG GK+TL+ ++AG +T G G +++ P R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 788 IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847
P ++V E+++F L A + R + E+++L L + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSG 136
Query: 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIH 902
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH 192
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIS 172
G + VI +V + A +L D + +SGGQ++RV G +V +D+
Sbjct: 104 GAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPL 161
Query: 173 TGLDSSTTFQI-VNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PR 230
+ LD++ Q+ + R +H +I + E L D I++L G++ G P
Sbjct: 162 SNLDAALRVQMRIEISR--LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 231 EL 232
EL
Sbjct: 220 EL 221
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 14/204 (6%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETF 776
+L G++ + G AL+G SG GK+T + ++ ++ + G + I G +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
I G Q + T+ E++ + E++ ++ + +++L +L
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFDTL 519
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GRT
Sbjct: 520 VGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGRT 577
Query: 897 VVCTIHQPSI----DIFESFDEAI 916
+ H+ S D+ FD +
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGV 601
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L G+S + G AL+G SG GK+T++ +L + + GS+ + G K +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
+ E + F + +R + EEI+ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 840 P-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 891 VDTGRTVVCTIHQPS 905
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 103 DVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRG--ISGGQKKRVTTGEMMV 160
DV M + +EAN D+ +K L + D LVG+ RG +SGGQK+R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 161 GPALAMFMDEISTGLDSST 179
+ +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 137 VGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSE 196
VGD+ + +SGGQK+R+ +V + +DE ++ LD+ + +++ + E
Sbjct: 1165 VGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE----KVVQEALDKARE 1219
Query: 197 TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
++ T D I+++ +G++ G + +L
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 16/206 (7%)
Query: 702 VDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGG 758
+D+ Q K G LE +L G++ R G + ++G SG+GK+T + ++L G
Sbjct: 25 IDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80
Query: 759 YITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAW-LRLAPEVDSETRK 817
I I + G Q P +TV ++ + +R P +E +
Sbjct: 81 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140
Query: 818 MFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
M EL++ L+ P + LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 141 M------ELLDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
Query: 878 RAAAIVMRTVRNTVDTGRTVVCTIHQ 903
V+ ++ + G T+V H+
Sbjct: 193 EMVGEVLSVMKQLANEGMTMVVVTHE 218
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 145 ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQ 204
+SGGQ +RV + M DE ++ LD ++++ ++Q N ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVTH 217
Query: 205 PAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPQRKGVADFLQEV 257
+ D ++ + G I+ +G P +L F PQ + FL +V
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 262
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 14/204 (6%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETF 776
+L G++ + G AL+G SG GK+T + ++ ++ + G + I G +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
I G Q + T+ E++ + E++ ++ + +++L +L
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFDTL 519
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GRT
Sbjct: 520 VGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGRT 577
Query: 897 VVCTIHQPSI----DIFESFDEAI 916
+ H+ S D+ FD +
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGV 601
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L G+S + G AL+G SG GK+T++ +L + + GS+ + G K +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
+ E + F + +R + EEI+ + + Q + L
Sbjct: 1106 RAQLG--------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 840 P-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
P G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 891 VDTGRTVVCTIHQPS 905
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 103 DVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRG--ISGGQKKRVTTGEMMV 160
DV M + +EAN D+ +K L + D LVG+ RG +SGGQK+R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 161 GPALAMFMDEISTGLDSST 179
+ +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 137 VGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSE 196
VGD+ + +SGGQK+R+ +V + +DE ++ LD+ + +++ + E
Sbjct: 1165 VGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE----KVVQEALDKARE 1219
Query: 197 TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
++ T D I+++ +G++ G + +L
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 29/189 (15%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET----FARISGYCEQN 786
G +TAL+G SG+GK+T++ +L + +G+I + G+ + ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 787 DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-NPLR---------QSL 836
+ S ++ E++A+ A + + EEI + E+ N + ++
Sbjct: 428 ILFS--CSIAENIAYGA---------DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VG GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRT
Sbjct: 477 VGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRT 534
Query: 897 VVCTIHQPS 905
V+ H+ S
Sbjct: 535 VLVIAHRLS 543
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 36/189 (19%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP--QRTAAYISQHDNH 58
+T L+GP SGK+T L L D + SG ++ +GH++ + P R+ +
Sbjct: 372 VTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+ ++ E +A+ A DP A E Q
Sbjct: 429 LFSCSIAENIAYGA-------------------------DDPS-----SVTAEEIQRVAE 458
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
+ + + + +VG++ + +SGGQK+R+ ++ + +DE ++ LD+
Sbjct: 459 VANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517
Query: 179 TTFQIVNCL 187
+ + L
Sbjct: 518 NEYLVQEAL 526
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 23/201 (11%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKK 772
+D +L +S +P + A G SG GK+T+ +L + T G IT I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT----IDGQPID 67
Query: 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPE-----VDSETRKMFIEEIM 824
+ E + G+ Q D T+ E+L + E +D + F+E +
Sbjct: 68 NISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 825 ELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884
+ +LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 127 D--QLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 885 RTVRNTVDTGRTVVCTIHQPS 905
+ + +++ GRT + H+ S
Sbjct: 180 KAL-DSLMKGRTTLVIAHRLS 199
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET----FARISGYCEQN 786
G +TAL+G SG+GK+T++ +L + +G+I + G+ + ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 787 DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-NPLR---------QSL 836
+ S ++ E++A+ A + + EEI + E+ N + ++
Sbjct: 459 ILFS--CSIAENIAYGA---------DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 507
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VG GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRT
Sbjct: 508 VGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRT 565
Query: 897 VVCTIHQPS 905
V+ H S
Sbjct: 566 VLVIAHHLS 574
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 36/189 (19%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP--QRTAAYISQHDNH 58
+T L+GP SGK+T L L D + SG ++ +GH++ + P R+ +
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+ ++ E +A+ A DP A E Q
Sbjct: 460 LFSCSIAENIAYGA-------------------------DDPS-----SVTAEEIQRVAE 489
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
+ + + + +VG++ + +SGGQK+R+ ++ + +DE ++ LD+
Sbjct: 490 VANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAE 548
Query: 179 TTFQIVNCL 187
+ + L
Sbjct: 549 NEYLVQEAL 557
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK--HETFA 777
+L G++ G AL+G SG GK+T++ +L + + G I I G + + F
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLEFL 490
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R + + T+ E+++ E+ + + E+ ++ L +LV
Sbjct: 491 RKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIK--TLPNGYNTLV 548
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
G G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + + GRT
Sbjct: 549 GDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DKAAKGRTT 606
Query: 898 VCTIHQPS 905
+ H+ S
Sbjct: 607 IIIAHRLS 614
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK----HET 775
+L G+S + PG AL+G SG GK+T++ +L + + G I I G K T
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
++I+ ++ + + + +V+ R I + EL ++
Sbjct: 1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNF--IAELPEGFET 1209
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 895
VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V + + GR
Sbjct: 1210 RVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL-DRAREGR 1267
Query: 896 TVVCTIHQ 903
T + H+
Sbjct: 1268 TCIVIAHR 1275
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 129 LDNCADILVGDEMIRG--ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNC 186
L N + LVGD RG +SGGQK+R+ +V + +DE ++ LD+ +
Sbjct: 540 LPNGYNTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE----GI 592
Query: 187 LRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
++Q + ++ ++ T D II +GQ+V G ++
Sbjct: 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM 640
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 24/203 (11%)
Query: 708 MKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKIS 767
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG +G GSI+ +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 768 GYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSA--WLRLAPEVDSETRKMFIEEIME 825
G P + + +++ +H +++ ++ F+ W L +TR + ++
Sbjct: 60 GQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG 112
Query: 826 LVEL-NPLRQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 879
+ L + L +S L G QR RL V + ANP+ ++ +D+P + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ 168
Query: 880 AAIVMRTVRNTVDTGRTVVCTIH 902
+ + + + G +V + H
Sbjct: 169 QSALDKILSALSQQGLAIVMSSH 191
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 10/201 (4%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGSIKISGYPK 771
E+ + L V+ + G ++ G SG+GK+T ++++ + T G + +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 772 KHETFARIS--GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
T R G+ Q P +T E++ + E R+ E ++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL 134
Query: 830 NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
+ N LS Q++R+ IA L NP II DEPT LD++ + + ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK 190
Query: 890 -TVDTGRTVVCTIHQPSIDIF 909
+ G+TVV H ++ F
Sbjct: 191 LNEEDGKTVVVVTHDINVARF 211
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 145 ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQ 204
+SGGQ++RV + + DE + LDS T +I L++ + +T V+ +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVV--VT 203
Query: 205 PAPETYNLFDDIILLSDGQI 224
+ II L DG++
Sbjct: 204 HDINVARFGERIIYLKDGEV 223
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 708 MKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKIS 767
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG +G GSI+ +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 768 GYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSA--WLRLAPEVDSETRKMFIEEIME 825
G P + + +++ +H +++ ++ F+ W L +TR + ++
Sbjct: 60 GQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG 112
Query: 826 LVEL-NPLRQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 879
+ L + L +S L G QR RL V + ANP+ ++ +D+P LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ 168
Query: 880 AAIVMRTVRNTVDTGRTVVCTIH 902
+ + + + G +V + H
Sbjct: 169 QSALDKILSALSQQGLAIVMSSH 191
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 115/267 (43%), Gaps = 45/267 (16%)
Query: 657 IWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTY----------SVDMPQ 706
I+G +S +S + AA I +G LP E + DE+ + S D+
Sbjct: 210 IYGESSVYGRVSKSYAARVGINNFLKGY-LPAENMKIRPDEIKFMLKEVSDLDLSKDLKT 268
Query: 707 EMKLQGVLED----KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYI 760
+MK +++ +LV+ NG + + G + ++G +G GKTT +L G T G +
Sbjct: 269 KMKWTKIIKKLGDFQLVVDNGEA---KEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325
Query: 761 TGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI 820
T +I Y K F G +Q ++ ++L+ S+W F
Sbjct: 326 TPEKQILSY-KPQRIFPNYDGTVQQYLENAS----KDALSTSSW--------------FF 366
Query: 821 EEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880
EE+ + + L+ L +S VN LS + ++L IA L + +D+P+S LD
Sbjct: 367 EEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 881 AIVMRTVRNTVDTGRTVVCTI-HQPSI 906
IV + ++ + V I H SI
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSI 448
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 24/183 (13%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISG---YCEQ 785
+ + ++G +G GKTT++ +LAG + + K+ K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 786 NDIHSPFVTVHESLAF----SAWLR-----LAPEVDSETRKMFIEEIMELVELNPLRQSL 836
+++S + + + + S +L+ + ++D +K +E+ EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
+ GL +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 897 VVC 899
+V
Sbjct: 191 IVV 193
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 24/202 (11%)
Query: 709 KLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG 768
+LQ V E L +SG R G + L+G +GAGK+TL+ AG +G GSI+ +G
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 769 YPKKHETFARISGYCEQNDIHSPFVTVHESLAFSA--WLRLAPEVDSETRKMFIEEIMEL 826
P + + +++ +H +++ ++ F+ W L +TR + ++
Sbjct: 61 QPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA 113
Query: 827 VEL-NPLRQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAA 880
+ L + L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 114 LALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQ 169
Query: 881 AIVMRTVRNTVDTGRTVVCTIH 902
+ + + + G +V + H
Sbjct: 170 SALDKILSALCQQGLAIVXSSH 191
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 24/202 (11%)
Query: 709 KLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG 768
+LQ V E L +SG R G + L+G +GAGK+TL+ AG +G GSI+ +G
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 769 YPKKHETFARISGYCEQNDIHSPFVTVHESLAFSA--WLRLAPEVDSETRKMFIEEIMEL 826
P + + +++ +H +++ ++ F+ W L +TR + ++
Sbjct: 61 QPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA 113
Query: 827 VEL-NPLRQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAA 880
+ L + L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 114 LALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQ 169
Query: 881 AIVMRTVRNTVDTGRTVVCTIH 902
+ + + + G +V + H
Sbjct: 170 SALDKILSALSQQGLAIVXSSH 191
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG------Y 769
D +L GV+ G + ALMG +GAGK+TL +LAG G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 770 PKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
P + + Q + P VT+ L + +L EV +++ +EL++
Sbjct: 74 PDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW 131
Query: 830 NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
+ +S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 132 D---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 57/257 (22%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
L+GP +GK+T LAG + +++ G + +G N+ E P A
Sbjct: 34 LMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDERA-------------- 78
Query: 64 VRETL--AFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
R+ L AF + G + LA + K G+E V +
Sbjct: 79 -RKGLFLAFQYPVEVPGVTIANFLRLALQAKL-------------------GREVGV-AE 117
Query: 122 YYLKV---LGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
++ KV L L + + + + G SGG+KKR +++V +DE +GLD
Sbjct: 118 FWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID 177
Query: 179 TTFQI---VNCLR----QNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231
+ VN +R + I +++ +QP D + ++ DG++V G E
Sbjct: 178 ALKVVARGVNAMRGPNFGALVITHYQRILNYIQP--------DKVHVMMDGRVVATGGPE 229
Query: 232 LVLEFFESMGFKCPQRK 248
L LE E+ G++ + K
Sbjct: 230 LALE-LEAKGYEWLKEK 245
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA----RISGY 782
+ G L+G SG GKTT + +AG T G I + P+K F R
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKG-VFVPPKERDVAX 88
Query: 783 CEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842
Q+ P TV++++AF LR P+ + + R + E + L EL L P
Sbjct: 89 VFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL------LNRKP-- 140
Query: 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 41/192 (21%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY------PKKHE 774
L+ +S G ++G +GAGKT ++++AG +G I + G P+KH+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 775 TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPE---VDSETRKMFIEEIMELVELNP 831
+ QN P + V ++L F ++ + V R + IE L++ NP
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---LLDRNP 125
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
L LS +++R+ +A LV NP I+ +DEP S LD R T
Sbjct: 126 L-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQ 163
Query: 892 DTGRTVVCTIHQ 903
+ R ++ +H+
Sbjct: 164 ENAREMLSVLHK 175
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 53/237 (22%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQR-TAAYISQHDNHIGE 61
++LGP +GKT FL +AG + SGR+ +G ++ + P++ A++ Q+ +
Sbjct: 30 VILGPTGAGKTLFLELIAG---FHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
M V++ L F R + + DP K V
Sbjct: 87 MNVKKNLEFGMRMKKI--------------------KDP------KRV------------ 108
Query: 122 YYLKVLGLDNCADILVGDEMIRG---ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
LD D+ + + R +SGG+++RV +V + +DE + LD
Sbjct: 109 -------LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
T L +H ++ V+ + E + D I ++ DG+++ G E + E
Sbjct: 162 TQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 12/185 (6%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA 777
+L G+S G + L+G +GAGKTT + +++ + + G +T K + + HE
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK-NVVEEPHEVRK 88
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
IS E+ + + E L F A + SE +M +E E+ L + V
Sbjct: 89 LISYLPEEAGAYRNMQGI-EYLRFVAGFYASSS--SEIEEM-VERATEIAGLGEKIKDRV 144
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
+ S ++L IA L+ NP + +DEPTSGLD A V + ++ G T+
Sbjct: 145 -----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 898 VCTIH 902
+ + H
Sbjct: 200 LVSSH 204
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 714 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG----- 768
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ G+++ G
Sbjct: 11 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 69
Query: 769 -YPKKHETFARISGYCEQNDIHSPFVT----VHESLAFSAWLRLAPEVDSETRKMFIEEI 823
P+ + Q + P V+ + +L R +D + +EE
Sbjct: 70 LSPEDRAGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 127
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
+ L+++ + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 128 IALLKMP---EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 184
Query: 884 MRTVRNTVDTGRTVVCTIH 902
V + D R+ + H
Sbjct: 185 ADGVNSLRDGKRSFIIVTH 203
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 17/200 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK---KHETFA 777
L+ VS + G AL+G SG+GK+T+ ++ + +GSI + G+ K
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPE-VDSETRKMFIEEIMELVELNPLRQSL 836
R QN +H T+ ++A++A E ++ R+ ME +E P Q L
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ---AHAMEFIENMP--QGL 470
Query: 837 VGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
+ G NG LS QR+R+ IA L+ + ++ +DE TS LD + + + + +
Sbjct: 471 DTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKN 529
Query: 895 RTVVCTIHQPSIDIFESFDE 914
+TV+ H+ S E DE
Sbjct: 530 KTVLVIAHRLS--TIEQADE 547
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHI 193
D ++G+ +SGGQ++RV ++ A + +DE ++ LD+ + I L + +
Sbjct: 471 DTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQK 528
Query: 194 NSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
N VI+ T D+I+++ +G+I+ +G
Sbjct: 529 NKTVLVIA---HRLSTIEQADEILVVDEGEIIERG 560
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 714 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG----- 768
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ G+++ G
Sbjct: 30 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 769 -YPKKHETFARISGYCEQNDIHSPFVT----VHESLAFSAWLRLAPEVDSETRKMFIEEI 823
P+ + Q + P V+ + +L R +D + +EE
Sbjct: 89 LSPEDRAGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
+ L+++ + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 147 IALLKMP---EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 884 MRTVRNTVDTGRTVVCTIH 902
V + D R+ + H
Sbjct: 204 ADGVNSLRDGKRSFIIVTH 222
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L ++ + G A +G+SG GK+TL++++ + +G I I G+ K +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 780 S---GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
G +Q++I TV E++ P EE++E ++ +
Sbjct: 414 RNQIGLVQQDNILFS-DTVKENILLG-----RPTATD-------EEVVEAAKMANAHDFI 460
Query: 837 VGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
+ LP G G LS Q++RL+IA + NP I+ +DE TS LD + +I+ +
Sbjct: 461 MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 520
Query: 888 RNTVDTGRTVVCTIHQPS 905
+ + RT + H+ S
Sbjct: 521 -DVLSKDRTTLIVAHRLS 537
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 44/232 (18%)
Query: 5 LGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV--PQRTAAYISQHDNHIGEM 62
+G GK+T + + D + SG++ +GHN+ +F+ R + Q DN +
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV+E + +P A E EA + +
Sbjct: 430 TVKENILLG-------------------------RP--------TATDEEVVEAAKMANA 456
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
+ ++ L D VG+ ++ +SGGQK+R++ + + + +DE ++ LD +
Sbjct: 457 HDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESE-- 513
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP-RELV 233
+ +++ + + S+ ++ T D I+++ +G IV G REL+
Sbjct: 514 --SIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 13/189 (6%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGSIKISGYPKKHETFA 777
+L G+S + + G +++G SG+GK+TL+ +L T G + K Y + E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 778 ---RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
R G+ Q P +T E++ P+ +++ R ++ L EL L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSELG-LGD 132
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
L P LS +++R+ IA L P ++F DEPT LD+ VM + G
Sbjct: 133 KLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 895 RTVVCTIHQ 903
++V H+
Sbjct: 191 TSIVMVTHE 199
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 101 DIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRG---ISGGQKKRVTTGE 157
++ V M + +EA +Y L LGL GD++ R +SGG+++RV
Sbjct: 102 NVIVPMLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIAR 153
Query: 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDII 217
+ + +F DE + LDS+ T ++++ + IN I ++ E L +
Sbjct: 154 ALANEPILLFADEPTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTL 210
Query: 218 LLSDGQIV 225
+ DG++V
Sbjct: 211 EMKDGKVV 218
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 145 ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQ 204
+SGGQ++RV+ + + DE ++ LD +++ ++Q V++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT--H 211
Query: 205 PAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPQRKGVADFLQ 255
++ +I L G+I +G E V F PQ + FL+
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 254
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 19/151 (12%)
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG-YPKK----HETFARISGYCEQNDIH- 789
L G++GAGKTTL+++L + +G++ + G P K ET + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 790 ----SPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGL 845
+ V S AF + + + ++D E R ++++LV + Q +G L
Sbjct: 110 FQEGERVIDVVISGAFKS-IGVYQDIDDEIRNE-AHQLLKLVGXSAKAQQYIGY-----L 162
Query: 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
ST +++R+ IA L P ++ +DEP +GLD
Sbjct: 163 STGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 145 ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQ 204
+S G+K+RV + G + +DE + GLD +++ L A I +
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 205 PAPETYNLFDDIILLSDGQIVYQGPRELVL 234
E F I+LL DGQ + QG E +L
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 27/169 (15%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV---LAGRKTGGYITGSIKISGYPKKHETF 776
+L+GV+ + +PG L A++G +G+GK+TLM++ L + G + + K +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-KLKDLR 416
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
IS ++ + S T+ E+L W R D EI+E ++ + +
Sbjct: 417 GHISAVPQETVLFSG--TIKENL---KWGREDATDD---------EIVEAAKIAQIHDFI 462
Query: 837 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
+ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 463 ISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 143 RGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISL 202
R SGGQK+R++ +V + +D+ ++ +D T +I++ L++ T +I+
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIIT- 535
Query: 203 LQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
Q P T L D I++L +G++ G + +LE
Sbjct: 536 -QKIP-TALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG---YPKKHETF 776
+LN +S + PG + ++G SG GKTTL+ LAG + +G I +SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 777 ARIS--GYCEQNDIHSPFVTVHESLAF---SAWLRLAPEVDSETRKMFIEEIMELVELNP 831
R GY Q + P +TV+ ++A+ + R A E + IE ++EL ++
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE------RQRIEAMLELTGISE 130
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
L + LS Q++R +A L +P +I +DEP S LD +
Sbjct: 131 LAGRY-----PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSIKISGYPKKHETFARISGYCEQND 787
G + L+G +GAGKTT + +AG + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 788 IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847
I P +TV+E+L A+ R D E K +E I L L++ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR----KDKEGIKRDLEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 9/178 (5%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIH 789
G AL+G +G+GK+T+ +L G IKI G K + R S +
Sbjct: 45 SGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGG--KNVNKYNRNSIRSIIGIVP 99
Query: 790 SPFVTVHESLAFSAWLRLAPEVDSETRKMFIE-EIMELVELNPLR-QSLVGLPGVNGLST 847
+ +E++ ++ D E K ++ + +E P + ++VG G+ LS
Sbjct: 100 QDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK-LSG 158
Query: 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905
+R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+ S
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS 215
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 134 DILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF---QIVNCLRQN 190
D +VG++ ++ +SGG+++R+ ++ + DE ++ LDS T + + V LR+N
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 191 IHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 236
+ ++ T + + IILL+ G+IV +G + +L+
Sbjct: 205 -------RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 36/179 (20%)
Query: 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYP---KK 772
+++L G++ RPG +TAL+G +G+GK+T+ +L + TG G + + G P +
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQYE 85
Query: 773 HETFARISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
H R Q P V ++ E++A+ T+K +EEI
Sbjct: 86 HRYLHRQVAAVGQ----EPQVFGRSLQENIAYGL-----------TQKPTMEEITAAAVK 130
Query: 830 NPLRQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 879
+ + GLP + LS QR+ + +A L+ P ++ +D+ TS LDA +
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 92/240 (38%), Gaps = 46/240 (19%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+T L+GP SGK+T L + G++ +G + PQ Y+ + +G
Sbjct: 45 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL----PQYEHRYLHRQVAAVG 97
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+ E F Q A G+ P ++ A G + +
Sbjct: 98 Q----EPQVFGRSLQ--------------ENIAYGLTQKPTMEEITAAAVKSGAHSFIS- 138
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
GL D V DE +SGGQ++ V ++ + +D+ ++ LD+++
Sbjct: 139 -------GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 181 FQIVNCLRQNIHINSETAV-----ISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
Q+ L ++ S + + +SL++ A D I+ L G I G + ++E
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQA-------DHILFLEGGAIREGGTHQQLME 243
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L VS G + G +G+GK+TL+ ++AG +G + G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 80
Query: 781 GYCEQNDIHSPFVT-VHESLAFSAWLRLAPEVDSETRKMFIEEIMELV--ELNPLRQSLV 837
G Q F V + +AF A P+ D +++ ME V + + + +
Sbjct: 81 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 136
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV
Sbjct: 137 FF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 191
Query: 898 VCTIH 902
+ H
Sbjct: 192 ILISH 196
Score = 37.0 bits (84), Expect = 0.066, Method: Composition-based stats.
Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 51/239 (21%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH--DNHIG 60
L+ G SGK+T L +AG ++ + SG V Y+G + +R Q+ D
Sbjct: 37 LVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 93
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPD-IDVYMKAVATEGQEANVI 119
E E +AF+ + PD D + + KA
Sbjct: 94 ERVFDE-VAFAVK---------------------NFYPDRDPVPLVKKA----------- 120
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSST 179
++ +GLD + D + +SGG+K+RV ++V + +DE GLD
Sbjct: 121 ----MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 180 TFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFE 238
++ + + + +IS N D +++L G+ V+ G R +EF E
Sbjct: 174 KTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLEKGKKVFDGTR---MEFLE 227
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L VS G + G +G+GK+TL+ ++AG +G + G KK R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 82
Query: 781 GYCEQNDIHSPFVT-VHESLAFSAWLRLAPEVDSETRKMFIEEIMELV--ELNPLRQSLV 837
G Q F V + +AF A P+ D +++ ME V + + + +
Sbjct: 83 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 138
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV
Sbjct: 139 FF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 193
Query: 898 VCTIH 902
+ H
Sbjct: 194 ILISH 198
Score = 37.0 bits (84), Expect = 0.067, Method: Composition-based stats.
Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 51/239 (21%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH--DNHIG 60
L+ G SGK+T L +AG ++ + SG V Y+G + +R Q+ D
Sbjct: 39 LVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 95
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPD-IDVYMKAVATEGQEANVI 119
E E +AF+ + PD D + + KA
Sbjct: 96 ERVFDE-VAFAVK---------------------NFYPDRDPVPLVKKA----------- 122
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSST 179
++ +GLD + D + +SGG+K+RV ++V + +DE GLD
Sbjct: 123 ----MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 175
Query: 180 TFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFE 238
++ + + + +IS N D +++L G+ V+ G R +EF E
Sbjct: 176 KTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLEKGKKVFDGTR---MEFLE 229
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%)
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG---YPKKHETFARISGYCEQNDIHSPF 792
L+G +GAGK+ ++++AG G ++++G P E R G+ Q+ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER--RGIGFVPQDYALFPH 84
Query: 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEE---IMELVELNPLRQSLVGLPGVNGLSTEQ 849
++V+ ++A+ LR V+ + R + E I L++ P R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
R+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 46/227 (20%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA-AYISQHDNHIGE 61
+LLGP +GK+ FL +AG + G V NG ++ P+R ++ Q
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
++V +A+ R R + E+A +
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEK------------------------------- 113
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
LG+ A +L D +SGG+++RV +V + +DE + +D T
Sbjct: 114 -----LGI---AHLL--DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163
Query: 182 QIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
++ LR + + ++ + E L D++ ++ +G+IV +G
Sbjct: 164 VLMEELR-FVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSIKISGYPKKHETFA 777
LN VS G + ++G SGAGK+TL+ ++L G + +++ + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R + I F + F + L E+D+ + + EL+ L L
Sbjct: 104 RR----QIGXIFQHFNLLSSRTVFGN-VALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 896
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 897 VVCTIHQPSI 906
++ H+ +
Sbjct: 217 ILLITHEXDV 226
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 139 DEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETA 198
D +SGGQK+RV + + D+ ++ LD +TT I+ L+ IN
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLG 214
Query: 199 VISLL--QPAPETYNLFDDIILLSDGQIVYQ 227
+ LL + D + ++S+G+++ Q
Sbjct: 215 LTILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 13/190 (6%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCE--QNDI 788
G AL+G SG+GK+T+ ++ + G I + G+ + T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG--LS 846
H TV ++A++ + + E E +M M+ + N + L + G NG LS
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARMAYA--MDFI--NKMDNGLDTVIGENGVLLS 482
Query: 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 907 DIFESFDEAI 916
E DE +
Sbjct: 541 -TIEKADEIV 549
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 42/234 (17%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV--PQRTAAYISQHDNHIGE 61
L+G SGK+T + D G + +GH++ E+ R + + H+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
TV +A+ AR E+ Y + E D
Sbjct: 431 DTVANNIAY-----------------ARTEQ------------YSREQIEEAARMAYAMD 461
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
+ K +DN D ++G+ + +SGGQ++R+ ++ + + +DE ++ LD+ +
Sbjct: 462 FINK---MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 182 QIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
I L + + N + VI+ T D+I+++ DG IV +G +LE
Sbjct: 518 AIQAALDE-LQKNRTSLVIA---HRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA 777
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEP------- 82
Query: 778 RISGYCEQNDIHSPFVTV-HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
+ Y + + +H+ V E L F R TR +EEI + + +
Sbjct: 83 -LVQY-DHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 837 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
G P N LS QR+ + +A L+ P ++ +D+ TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLL 199
Query: 888 RNTVD-TGRTVVCTIHQPSI 906
+ + RTV+ HQ S+
Sbjct: 200 YESPEWASRTVLLITHQLSL 219
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 46/240 (19%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+T L+GP SGK+T L + G+V +G + Q+D+H
Sbjct: 47 VTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPL------------VQYDHHY- 90
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+ VG + R A G+ P ++ + AVA E + I+
Sbjct: 91 ---------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME-EITAVAMESGAHDFIS 140
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
G D VG E +SGGQ++ V ++ + +D+ ++ LD+
Sbjct: 141 -------GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 181 FQIVNCLRQNIHINSETAV-----ISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
++ L ++ S T + +SL + A I+ L +G + QG ++E
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERA-------HHILFLKEGSVCEQGTHLQLME 245
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCE--QNDI 788
G AL+G SG+GK+T+ ++ + G I + G+ + T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG--LS 846
H TV ++A++ + E E +M M+ + N + L + G NG LS
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAYA--MDFI--NKMDNGLDTIIGENGVLLS 482
Query: 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 907 DIFESFDEAI 916
E DE +
Sbjct: 541 -TIEQADEIV 549
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 42/233 (18%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV--PQRTAAYISQHDNHIGE 61
L+G SGK+T + D G + +GH++ E+ R + + H+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
TV +A+ AR E+ Y + E D
Sbjct: 431 DTVANNIAY-----------------ARTEE------------YSREQIEEAARMAYAMD 461
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
+ K +DN D ++G+ + +SGGQ++R+ ++ + + +DE ++ LD+ +
Sbjct: 462 FINK---MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 182 QIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
I L + + N + VI+ T D+I+++ DG IV +G +L
Sbjct: 518 AIQAALDE-LQKNRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 16/185 (8%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI------TGSIKISGYPKKHETFARISGY 782
+ G + ++G +G GK+T + +LAG+ G I+ + F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 783 CEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-NPLRQSLVGLPG 841
+ + +V + + L + D ET K+ EE+++ +EL N L +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKL--EEVVKALELENVLERE------ 155
Query: 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 901
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 902 HQPSI 906
H ++
Sbjct: 216 HDLAV 220
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 30/186 (16%)
Query: 726 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFARISGYC 783
G + G + ++G +G GKTT + LAG T G I + ++ P+ Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YI 356
Query: 784 EQNDIHSPFVTVHESLAFSAWLRL-APEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842
+ + +E + ++ A +++S K + + + +++L V
Sbjct: 357 KAD---------YEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE--------V 399
Query: 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
N LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVE 459
Query: 903 QPSIDI 908
+ I
Sbjct: 460 HDVLXI 465
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 139 DEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETA 198
D + +SGG+ +RV ++ A +DE S LD + +R N +TA
Sbjct: 396 DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTA 455
Query: 199 VI 200
++
Sbjct: 456 LV 457
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFARISGYCEQNDI 788
G + A++G +G GK+TL+D+L G R G I E + I G+ Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSI-GFVPQ-FF 75
Query: 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848
SPF S+ + + +++ + + + + L+ L + + LS
Sbjct: 76 SSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 905
QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 35/176 (19%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 761
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 762 GSIKISGYPKKHETFARISGYC--EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMF 819
G ++ P+ + + E N SP SL + W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 820 IEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
+I+E ++L+ L G LS Q K + I L+ NP +I MD+P +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 37/236 (15%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAY----ISQHD 56
+TL++GP SGK+T + + G L + GRV + ++ P Y Q
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
+ EMTV E L ++ E+ E P ++ K + +E
Sbjct: 92 QPLKEMTVLENL--------------LIGEINPGES-------PLNSLFYKKWIPKEEEM 130
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
L+ L L + D G+ +SGGQ K V G ++ + MD+ G+
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVA 185
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPE-TYNLFDDIILLSDGQIVYQGPRE 231
I N + + + ++ +++ + N D + ++ +GQI+ +G E
Sbjct: 186 PGLAHDIFNHV---LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGSIKISGYPKKHETFAR 778
LN VS G + ++G SGAGK+TL+ L R T GS+ + G + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 76
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
++ Q + + S + L E+D+ + + EL+ L L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 897
P + LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G T+
Sbjct: 137 YP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 898 VCTIHQ 903
+ H+
Sbjct: 195 LLITHE 200
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
+SGGQK+RV + + DE ++ LD +TT I+ L+ IN + LL
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD---INRRLGLTILL 196
Query: 204 --QPAPETYNLFDDIILLSDGQIVYQ 227
+ D + ++S+G+++ Q
Sbjct: 197 ITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 35/207 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 761
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 762 GSIKISGYPKKHETFARISGYC--EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMF 819
G ++ P+ + + E N SP SL + W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 820 IEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 879
+I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 880 AAIVMRTVRNTVDTGRTVVCTIHQPSI 906
A + V G T + H+ I
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI 215
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 37/236 (15%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAY----ISQHD 56
+TL++GP SGK+T + + G L + GRV + ++ P Y Q
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
+ EMTV E L G P ++ K + +E
Sbjct: 92 QPLKEMTVLENLLIGEINPG---------------------ESPLNSLFYKKWIPKEEEM 130
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
L+ L L + D G+ +SGGQ K V G ++ + MDE G+
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPE-TYNLFDDIILLSDGQIVYQGPRE 231
I N + + + ++ +++ + N D + ++ +GQI+ +G E
Sbjct: 186 PGLAHDIFNHV---LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGSIKISGYPKKHET 775
L+N VS G + A++G +GAGK+TL+ +L G + ++ G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 776 FARISGYCEQ-NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
AR Q +++ PF +V E + AP S+ R+ ++++M + L Q
Sbjct: 83 LARTRAVMRQYSELAFPF-SVSEVIQMGR----APYGGSQDRQA-LQQVMAQTDCLALAQ 136
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVR 888
LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 137 R-----DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 889 N-TVDTGRTVVCTIH 902
T V C +H
Sbjct: 192 QLTRQEPLAVCCVLH 206
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 90/243 (37%), Gaps = 54/243 (22%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDN 57
M ++GP +GK+T L L G L S G G N+ + P+ RT A + Q+
Sbjct: 39 MVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSE 95
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+V E + G ++ ++A
Sbjct: 96 LAFPFSVSEVIQMGRAPYG---------------------------------GSQDRQA- 121
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV---GPALA---MFMDEI 171
+V+ +C + D R +SGG+++RV ++ P +F+DE
Sbjct: 122 -----LQQVMAQTDCLALAQRD--YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEP 174
Query: 172 STGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231
++ LD + LRQ + AV +L D I+LL+ G++V G E
Sbjct: 175 TSALDLYHQQHTLRLLRQ-LTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPE 233
Query: 232 LVL 234
VL
Sbjct: 234 EVL 236
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYITGSIKISGYPKKHETFAR 778
LN VS G + ++G SGAGK+TL+ L R T GS+ + G + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 99
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
++ Q + + S + L E+D+ + + EL+ L L
Sbjct: 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 897
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T+
Sbjct: 160 YP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 898 VCTIHQ 903
+ H+
Sbjct: 218 LLITHE 223
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLL 203
+SGGQK+RV + + D+ ++ LD +TT I+ L+ IN + LL
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILL 219
Query: 204 --QPAPETYNLFDDIILLSDGQIVYQ 227
+ D + ++S+G+++ Q
Sbjct: 220 ITHEMDVVKRICDCVAVISNGELIEQ 245
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 31/205 (15%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L+GVS + G +T ++G +G+GK+TL++V+ G G + ++ A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 781 GYCEQNDIHSP----FVTVHE---------------SLAFSAWLRLAPEVDSETRKMFIE 821
Y +P +TV E SL + W+ P+ + K F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKAF-- 135
Query: 822 EIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
+I+E ++L+ L G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 882 IVMRTVRNTVDTGRTVVCTIHQPSI 906
+ V G T + H+ I
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI 215
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 90/236 (38%), Gaps = 37/236 (15%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAY----ISQHD 56
+TL++GP SGK+T + + G L + GRV + ++ P Y Q
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTP 91
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
+ EMTV E L C G P ++ K + +E
Sbjct: 92 QPLKEMTVLENLLIGEICPG---------------------ESPLNSLFYKKWIPKEEEM 130
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
L+ L L + D G+ +SGGQ K V G ++ + MDE G+
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPE-TYNLFDDIILLSDGQIVYQGPRE 231
I N + + + ++ +++ + N D + ++ +GQI+ +G E
Sbjct: 186 PGLAHDIFNHV---LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 27/200 (13%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA 777
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEP------- 82
Query: 778 RISGYCEQNDIHSPFVTV-HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
+ Y + + +H+ V E L F R TR +EEI + + +
Sbjct: 83 -LVQY-DHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 837 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
G P N LS QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 888 RNTVD-TGRTVVCTIHQPSI 906
+ + RTV+ Q S+
Sbjct: 200 YESPEWASRTVLLITQQLSL 219
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 90/237 (37%), Gaps = 40/237 (16%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+T L+GP SGK+T L + G+V +G + Q+D+H
Sbjct: 47 VTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPL------------VQYDHHY- 90
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+ VG + R A G+ P ++ + AVA E + I+
Sbjct: 91 ---------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME-EITAVAMESGAHDFIS 140
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
G D VG E +SGGQ++ V ++ + +D ++ LD+
Sbjct: 141 -------GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 181 FQIVNCLRQNIHINSETAVI--SLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
++ L ++ S T ++ L A ++ I+ L +G + QG ++E
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHH----ILFLKEGSVCEQGTHLQLME 245
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
LNG++ + G L A++G G GK++L+ L + G + I G A I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI- 77
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
QND ++ E++ F L P S + + +E+ L ++ +G
Sbjct: 78 ----QND------SLRENILFGCQLE-EPYYRSVIQACALLPDLEI--LPSGDRTEIGEK 124
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 125 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 27/200 (13%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA 777
+L G++ PG +TAL+G +G+GK+T+ +L + TGG + + G P
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEP------- 82
Query: 778 RISGYCEQNDIHSPFVTV-HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
+ Y + + +H+ V E L F R TR +EEI + + +
Sbjct: 83 -LVQY-DHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFI 139
Query: 837 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
G P N L+ QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 140 SGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
Query: 888 RNTVD-TGRTVVCTIHQPSI 906
+ + RTV+ Q S+
Sbjct: 200 YESPEWASRTVLLITQQLSL 219
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 51/204 (25%)
Query: 696 DEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-- 753
D + + P K QG +LN G F + +MG +G GKTTL+ +LAG
Sbjct: 348 DSASRAFSYPSLKKTQGDF-----VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402
Query: 754 RKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDS 813
+ G + +S P+K +AP+
Sbjct: 403 KPDEGQDIPKLNVSMKPQK----------------------------------IAPKFPG 428
Query: 814 ETRKMFIEEIMELVELNPLRQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPS 864
R++F ++I LNP Q+ V P V LS + +R+ I + L
Sbjct: 429 TVRQLFFKKIRGQF-LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPAD 487
Query: 865 IIFMDEPTSGLDARAAAIVMRTVR 888
I +DEP++ LD+ I + +R
Sbjct: 488 IYLIDEPSAYLDSEQRIICSKVIR 511
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 31/196 (15%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQN-- 786
RPG + L+G +G GK+T + +LAG++ + P+ E G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG----RFDDPPEWQEIIKYFRGSELQNYF 156
Query: 787 ------DIHS----------PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
DI + P L+L E E K +I+ I++L N
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIK-ILQLE--N 213
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
L++ + LS + +R I + V + DEP+S LD + + +R+
Sbjct: 214 VLKRD------IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Query: 891 VDTGRTVVCTIHQPSI 906
+ + V+C H S+
Sbjct: 268 LAPTKYVICVEHDLSV 283
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 139 DEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETA 198
D+ ++ +SGG+ +RV + PA +DE S LDS +R+ I N +TA
Sbjct: 462 DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 199 VISLLQPAPETYNLFDDIILLSDGQIVYQG 228
I TY L+D IV++G
Sbjct: 522 FIVEHDFIMATY--------LADKVIVFEG 543
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 22/194 (11%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L VS PG AL+G SGAGK+T++ +L + +G I+I G T A +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 781 ---GYCEQ-----NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEE-IMELVELNP 831
G Q ND T+ +++ + EV++ + I + IM E
Sbjct: 128 SHIGVVPQDTVLFND------TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY- 180
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
++ VG G+ LS +++R+ IA ++ P II +DE TS LD + ++ V
Sbjct: 181 --RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-V 236
Query: 892 DTGRTVVCTIHQPS 905
RT + H+ S
Sbjct: 237 CANRTTIVVAHRLS 250
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 43/233 (18%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
L+GP +GK+T L L D S SG + +G + + Q T A + H + + T
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQD----ISQVTQASLRSHIGVVPQDT 137
Query: 64 V--RETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
V +T+A + R V D E+ +AAGI
Sbjct: 138 VLFNDTIADNIRYGRVTAGND---EVEAAAQAAGI------------------------- 169
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
+ ++ VG+ ++ +SGG+K+RV ++ + +DE ++ LD+S
Sbjct: 170 -HDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 182 QIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
I L + + N T V++ T D I+++ DG IV +G E +L
Sbjct: 228 AIQASLAK-VCANRTTIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALL 276
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 28/196 (14%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGSIKISGYPKKHETF 776
+L ++ +PG AL+G +G+GKTT++++L G + I I K +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI--KRSSL 427
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
G Q+ I TV E+L + P E EI E +L +
Sbjct: 428 RSSIGIVLQDTILFS-TTVKENLKYGN-----PGATDE-------EIKEAAKLTHSDHFI 474
Query: 837 VGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
LP NG LS QR+ L I +ANP I+ +DE TS +D + + +
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM 534
Query: 888 RNTVDTGRTVVCTIHQ 903
++ G+T + H+
Sbjct: 535 WKLME-GKTSIIIAHR 549
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDI 788
+ G++ ++G +G GKTT + +LAG+ I + ++++ + N++
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQL----------IPNLCEDNDSWDNVIRAFRGNEL 164
Query: 789 HSPFVTVHES----LAFSAWLRLAPE-VDSETRKMF--IEEIMELVEL-------NPLRQ 834
+ F + + ++ L P+ V + R++ ++E+ + E+ N L +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 224
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
L + LS + +R+ IA L+ F DEP+S LD R V R +R + G
Sbjct: 225 EL------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG 278
Query: 895 RTVVCTIHQPSI 906
+ V+ H ++
Sbjct: 279 KAVLVVEHDLAV 290
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 31/221 (14%)
Query: 688 FEPHSLIFDEVTYSVDMPQEMKLQ--GVLED-KLVLLNGVSGAFRPGVLTALMGVSGAGK 744
F P+ + F +++ VD+ +E ++ +++D L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 745 TTLMDVLAG--RKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFS 802
TT + +LAG T G + + ++ P+ A G TV+E L+
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQY--IKAEYEG------------TVYELLSKI 441
Query: 803 AWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 862
+L +T + I++L + N V LS + +R+ IA L+ +
Sbjct: 442 DSSKLNSNF-YKTELLKPLGIIDLYDRN-----------VEDLSGGELQRVAIAATLLRD 489
Query: 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
I +DEP++ LD V R +R+ ++ +
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 23/137 (16%)
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQI 183
LK LG+ I + D + +SGG+ +RV ++ A +DE S LD +
Sbjct: 456 LKPLGI-----IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 184 VNCLRQNIHINSETAVISLLQPAPETYNLFDDIILL---SDGQIVYQGPRELVLEFFESM 240
+R + N +TA++ + D++++ SD IV++G M
Sbjct: 511 SRAIRHLMEKNEKTALV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPM 559
Query: 241 GFKCPQRKGVADFLQEV 257
G R+G+ FL V
Sbjct: 560 GM----REGMNRFLASV 572
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDI 788
+ G++ ++G +G GKTT + +LAG+ I + ++++ + N++
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQL----------IPNLCEDNDSWDNVIRAFRGNEL 150
Query: 789 HSPFVTVHES----LAFSAWLRLAPE-VDSETRKMF--IEEIMELVEL-------NPLRQ 834
+ F + + ++ L P+ V + R++ ++E+ + E+ N L +
Sbjct: 151 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 210
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
L + LS + +R+ IA L+ F DEP+S LD R V R +R + G
Sbjct: 211 EL------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG 264
Query: 895 RTVVCTIHQPSI 906
+ V+ H ++
Sbjct: 265 KAVLVVEHDLAV 276
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 688 FEPHSLIFDEVTYSVDMPQEMKLQ--GVLED-KLVLLNGVSGAFRPGVLTALMGVSGAGK 744
F P+ + F +++ VD+ +E ++ +++D L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 745 TTLMDVLAG--RKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFS 802
TT + +LAG T G + + ++ P+ + A G TV+E L+
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIK--AEYEG------------TVYELLSKI 427
Query: 803 AWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 862
+L +T + I++L + N V LS + +R+ IA L+ +
Sbjct: 428 DSSKLNSNF-YKTELLKPLGIIDLYDRN-----------VEDLSGGELQRVAIAATLLRD 475
Query: 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
I +DEP++ LD V R +R+ ++ +
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 139 DEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETA 198
D + +SGG+ +RV ++ A +DE S LD + +R + N +TA
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 199 VISLLQPAPETYNLFDDIILL---SDGQIVYQGPRELVLEFFESMGFKCPQRKGVADFLQ 255
++ + D++++ SD IV++G MG R+G+ FL
Sbjct: 512 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 556
Query: 256 EV 257
V
Sbjct: 557 SV 558
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD- 749
S+ + SVD +++ + G E L G+ +F GVLT++ GVSG+GK+TL++
Sbjct: 631 ESIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVND 687
Query: 750 ----VLAGRKTG 757
VLA R G
Sbjct: 688 ILAAVLANRLNG 699
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 845 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 901
LS + +R+ +A EL ++ +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 902 HQPSIDIFESFD 913
H ++D+ ++ D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETF 776
+L +S + PG L+G +G+GK+TL+ G I+I G E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLR--LAPEV---DSETRKMFIE-EIMELVELN 830
+ G Q + FS R L P D E K+ E + ++E
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
P + V + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 891 VDTGRTVVC 899
++C
Sbjct: 202 FADCTVILC 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP-KKHETFARISGYCEQNDIHSPFVT 794
++G +G+GKTTL+ ++G +G+I I+G +K + R S + + VT
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 795 VHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVNGLSTEQRKR 852
V++ + L E+ R +F+E +++ ++L LR+ L L S Q
Sbjct: 90 VNDIV------YLYEELKGLDRDLFLE-MLKALKLGEEILRRKLYKL------SAGQSVL 136
Query: 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 912
+ ++ L + P I+ +DEP +DA ++ R ++ + G+ + H+ +D+ +
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDMLNLY 191
Query: 913 DE 914
E
Sbjct: 192 KE 193
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNG 37
++LGP SGKTT L A++G L SG + NG
Sbjct: 34 IILGPNGSGKTTLLRAISG----LLPYSGNIFING 64
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 822 EIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
E + +V LNP L P LS ++R+ IA+ L+ +P ++ +DEPTS LD A
Sbjct: 135 EKLRMVRLNP-EAVLNSYPL--QLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQA 191
Query: 882 IVMR 885
+++
Sbjct: 192 HIIQ 195
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 815 TRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874
TRK IEE ++ L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 875 LD 876
LD
Sbjct: 932 LD 933
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQK-KRVTTGEMMVGPALAMFMDEISTGLDSST 179
+ + +LGLD +V IRG+SGGQK K V P L + +DE + LD +
Sbjct: 881 EEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL-IVLDEPTNYLDRDS 936
Query: 180 TFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
+ L++ E VI + A T NL +++ + DG++ G
Sbjct: 937 LGALSKALKE-----FEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
+LLN + + G +G GK+TLM +A + + G+P + E
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR-- 496
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
+ Y E + + + + ++ L E T++ ++++E ++
Sbjct: 497 -TVYVEHD--------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF----GFTDEMIA 543
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
+P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 544 MP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 845 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 901
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 902 HQPSIDIFESFD 913
H ++D+ ++ D
Sbjct: 906 H--NLDVIKTAD 915
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 768 GYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEI---- 823
GY K E+ A + G ++ + ++V E+LAF L L E +++ ++ + EI
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTA--MSVTEALAFFDGLELT-EKEAQIARLILREIRDRL 485
Query: 824 --MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
++ V L+ L +L G QR RL + + +DEP+ GL R
Sbjct: 486 GFLQNVGLDYL--TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543
Query: 882 IVMRTVRNTVDTGRTVVCTIH 902
++ T+++ D G T++ H
Sbjct: 544 RLIATLKSMRDLGNTLIVVEH 564
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 845 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 901
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 902 HQPSIDIFESFD 913
H ++D+ ++ D
Sbjct: 604 H--NLDVIKTAD 613
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 845 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 901
LS + +R+ +A EL + + +DEPT GL ++ + VD G TV+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 902 HQPSIDIFESFDEAI 916
H ++D+ ++ D I
Sbjct: 866 H--NLDVIKNADHII 878
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 845 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 901
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 902 HQPSIDIFESFD 913
H ++D+ ++ D
Sbjct: 906 H--NLDVIKTAD 915
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 768 GYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEI---- 823
GY K E+ A + G ++ + VT E+LAF L L E +++ ++ + EI
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTAXSVT--EALAFFDGLELT-EKEAQIARLILREIRDRL 485
Query: 824 --MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
++ V L+ L +L G QR RL + + +DEP+ GL R
Sbjct: 486 GFLQNVGLDYL--TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543
Query: 882 IVMRTVRNTVDTGRTVVCTIH 902
++ T+++ D G T++ H
Sbjct: 544 RLIATLKSXRDLGNTLIVVEH 564
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 807 LAPEVDSETRKMFIEEIMELVELNPLRQS-----LVGLPGVNGLSTEQRKRLTIAVELVA 861
LA VD E F +E L+ LR+ +G P LS + +R+ +A EL
Sbjct: 690 LALTVD-EAHDFFADESAIFRALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRR 747
Query: 862 NP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
+ ++ +DEPT+GL + R + VD G TV+ H+
Sbjct: 748 SGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 33.1 bits (74), Expect = 0.99, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSL-KVSGRVTYNGHNMGEFVPQR 47
L+GP A+GKT +ALA L L V + Y G ++G P R
Sbjct: 9 FLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSR 54
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 815 TRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874
TRK IEE + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 875 LD 876
LD
Sbjct: 932 LD 933
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQK-KRVTTGEMMVGPALAMFMDEISTGLDSST 179
+ + LGLD +V IRG+SGGQK K V P L + +DE + LD +
Sbjct: 881 EEHCSXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL-IVLDEPTNYLDRDS 936
Query: 180 TFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
+ L++ E VI + A T NL +++ + DG+ G
Sbjct: 937 LGALSKALKE-----FEGGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 815 TRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874
TRK IEE + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 870 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 925
Query: 875 LD 876
LD
Sbjct: 926 LD 927
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQK-KRVTTGEMMVGPALAMFMDEISTGLDSST 179
+ + LGLD +V IRG+SGGQK K V P L + +DE + LD +
Sbjct: 875 EEHCSXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL-IVLDEPTNYLDRDS 930
Query: 180 TFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
+ L++ E VI + A T NL +++ + DG+ G
Sbjct: 931 LGALSKALKE-----FEGGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|1SLY|A Chain A, Complex Of The 70-Kda Soluble Lytic Transglycosylase With
Bulgecin A
Length = 618
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 716 DKLVLLNGVSGAFRP-GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSIKISGYPK 771
DKL + SG P L + AG T L+ VLAG+ Y T I ++ P
Sbjct: 140 DKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN 199
Query: 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
TFAR +G + F ++AF++ R D+E ++ I + + +LN
Sbjct: 200 TVLTFARTTGATD-------FTRQMAAVAFASVAR----QDAENARLMIPSLAQAQQLN 247
>pdb|1QSA|A Chain A, Crystal Structure Of The 70 Kda Soluble Lytic
Transglycosylase Slt70 From Escherichia Coli At 1.65
Angstroms Resolution
pdb|1QTE|A Chain A, Crystal Structure Of The 70 Kda Soluble Lytic
Transglycosylase Slt70 From Escherichia Coli At 1.90 A
Resolution In Complex With A 1,6- Anhydromurotripeptide
Length = 618
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 716 DKLVLLNGVSGAFRP-GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSIKISGYPK 771
DKL + SG P L + AG T L+ VLAG+ Y T I ++ P
Sbjct: 140 DKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN 199
Query: 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
TFAR +G + F ++AF++ R D+E ++ I + + +LN
Sbjct: 200 TVLTFARTTGATD-------FTRQMAAVAFASVAR----QDAENARLMIPSLAQAQQLN 247
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIK 765
L +S +P V+ A++G+ GK+ LM+ LAG+K G + +++
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQ 72
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 30/163 (18%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI------EEIMELVELNPLR 833
S +C QN P T+ E++ + D + I E+I + E + +
Sbjct: 102 S-FCSQNSWIMP-GTIKENI-------IGVSYDEYRYRSVIKACQLEEDISKFAEKDNI- 151
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
++G G+ LS QR R+++A + + + +D P LD
Sbjct: 152 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 30/163 (18%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI------EEIMELVELNPLR 833
S +C QN P T+ E++ + D + I E+I + E + +
Sbjct: 102 S-FCSQNSWIMP-GTIKENI-------IGVSYDEYRYRSVIKACQLEEDISKFAEKDNI- 151
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
++G G+ LS QR R+++A + + + +D P LD
Sbjct: 152 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
S +C Q P T+ E++ F E+I + E + + ++G
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 138
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
G+ LS QR R+++A + + + +D P LD
Sbjct: 139 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 757
+S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSS---LKVSGRVTY 35
M + G SGKT+ L+ + G+L++S +K SGRV++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSS---LKVSGRVTY 35
M + G SGKT+ L+ + G+L++S +K SGRV++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSS---LKVSGRVTY 35
M + G SGKT+ L+ + G+L++S +K SGRV++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSS---LKVSGRVTY 35
M + G SGKT+ L+ + G+L++S +K SGRV++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSS---LKVSGRVTY 35
M + G SGKT+ L+ + G+L++S +K SGRV++
Sbjct: 66 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
S +C Q P T+ E++ F E+I + E + + ++G
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 126
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
G+ LS QR R+++A + + + +D P LD
Sbjct: 127 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,571,886
Number of Sequences: 62578
Number of extensions: 1310357
Number of successful extensions: 3371
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2974
Number of HSP's gapped (non-prelim): 356
length of query: 1262
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1152
effective length of database: 8,089,757
effective search space: 9319400064
effective search space used: 9319400064
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)