Query 000838
Match_columns 1262
No_of_seqs 304 out of 5481
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 15:51:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000838.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_610-613//hhsearch_pdb/000838hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 627.0 47.2 769 1-915 446-1285(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 557.0 48.9 202 690-915 1028-1239(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 430.1 28.3 185 692-915 357-542 (607)
4 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 422.7 28.4 187 692-915 269-456 (538)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 422.3 26.4 185 692-915 287-472 (538)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 410.5 30.1 168 1-233 463-633 (986)
7 3j16_B RLI1P; ribosome recycli 1.0 1 1 404.0 24.2 173 719-916 361-539 (608)
8 3ux8_A Excinuclease ABC, A sub 1.0 1 1 403.6 29.3 198 1-233 46-296 (670)
9 4f4c_A Multidrug resistance pr 1.0 1 1 326.5 12.4 199 690-914 413-621 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 323.7 28.1 182 719-915 598-877 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=626.96 Aligned_cols=769 Identities=19% Similarity=0.195 Sum_probs=365.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9998379999978999898189899983347999889337987553---1278664444778889989999999762288
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~---~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~ 77 (1262)
.++|+||||||||||+++|.|+++|. +|+|.+||.++++.+.+ +.++||+|++++ ++.||||||.|+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~~---- 517 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGKE---- 517 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTCT----
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEE-ECCCHHHHHHHHCC----
T ss_conf 78998058985778888754565164---48615799650112599985046665875332-07861678864155----
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 86502348978999852999998546888785410110244699999981983334442248854336511100458999
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~ 157 (1262)
...++++.++|+.... .-.+..||+++||.||+++ .+||||||||++|||
T Consensus 518 ~~~~~~v~~a~~~a~l-----------------------------~~~i~~lp~G~~T~vGe~G-~~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 518 GITREEMVAACKMANA-----------------------------EKFIKTLPNGYNTLVGDRG-TQLSGGQKQRIAIAR 567 (1321)
T ss_dssp TCCHHHHHHHHHHTTC-----------------------------HHHHHHSTTTTSSEESSSS-CCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC-----------------------------HHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHH
T ss_conf 2209999999987565-----------------------------4688708888860755898-877777879999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHHHH
Q ss_conf 98559808787279855027999999999999856159989999348983599730035884698088866801189999
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFF 237 (1262)
Q Consensus 158 aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~~f 237 (1262)
|++++|+|++||||||+||++++..+.++|++.. +++|+|+..|+ .++...+|+|++|++|+++++|+++++.+.
T Consensus 568 Al~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHr--ls~i~~aD~Iivl~~G~ive~Gth~eL~~~- 642 (1321)
T 4f4c_A 568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHR--LSTIRNADLIISCKNGQVVEVGDHRALMAQ- 642 (1321)
T ss_dssp HHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSC--TTTTTTCSEEEEEETTEEEEEECHHHHHTT-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCC--HHHHHHCCEEEEEECCEEECCCCHHHHHHH-
T ss_conf 8725999899845544688789999999999984--79889997363--878986898999639965136899999985-
Q ss_pred HHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHC------CCCC----------CCCCHHHHHHHHHCHHHH----HHHHH
Q ss_conf 838999999999345896506903566664311------7898----------768988999998500233----89998
Q 000838 238 ESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHK------EIPY----------RFITVQEFAEAFKSFHVG----QKLAD 297 (1262)
Q Consensus 238 ~~~g~~~p~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~~~~~~~~~~~~----~~~~~ 297 (1262)
.+.+.-+.+.+...+......+. .... ......+.....+..... ....+
T Consensus 643 ----------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1321)
T 4f4c_A 643 ----------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVID 712 (1321)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHH
T ss_conf ----------3279999996221222233233443322321112222234222222211022111013212456774025
Q ss_pred HHCCCCCCCHHH--HHHH-HCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------HHHHHC-CCC
Q ss_conf 723877886024--7533-11655554899999999999999840938999999999999999-------877514-346
Q 000838 298 ELRIPFDKSQSH--RAAL-AKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALV-------TMTLFF-RTK 366 (1262)
Q Consensus 298 ~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~l~-------~g~l~~-~~~ 366 (1262)
+.+......... .... .......+.+ +.+......+..+++..+...+.+.. .....- ...
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 784 (1321)
T 4f4c_A 713 EKEERIGKDALSRLKQELEENNAQKTNLF--------EILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAG 784 (1321)
T ss_dssp ---CCCCCCHHHHHHHTTTTSCCCCCCHH--------HHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCEEHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 77753154038999999997078631099--------9999987789999999999999999999999999999987517
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-HHHH-HHHHHHHHH--------CCCEEEEC--CCCCCCCCHHHHHHHHHHHHH--H
Q ss_conf 88876567430236889999999-9977-999997530--------24000000--138997804589979999830--9
Q 000838 367 MKKDSVADGGVYAGVMFFAIVIV-MFNG-YAEISMTIV--------KIPVFYKQ--RDLQFFPPWAYALPTWILKIP--I 432 (1262)
Q Consensus 367 ~~~~~~~~~~~~~~~lf~~~~~~-~~~~-~~~~~~~~~--------~~~v~~~~--r~~~~y~~~~~~l~~~i~~~p--~ 432 (1262)
.+.+ ......+.+.++..+... .+.. ......... +..++.+- ....++.......+..+..+. +
T Consensus 785 ~~~~-~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~ 863 (1321)
T 4f4c_A 785 NPAD-FLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDV 863 (1321)
T ss_dssp CSST-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHH
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHH
T ss_conf 9345-566789999999999999999999999999999999999999999888734993332167888488885025059
Q ss_pred HHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99988876420244305325724599999999999999999999998715756889999999999999872542386785
Q 000838 433 SFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDI 512 (1262)
Q Consensus 433 ~~~~~~i~~~i~Y~l~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~~i 512 (1262)
..+.. .....+..++. .....++.++.....++..+.....+ ++.+.+..++......
T Consensus 864 ~~i~~---------------~l~~~l~~~~~-----~~~~~i~~~~~~~~~~~~l~lv~l~~--~~~~~~~~~~~~~~~~ 921 (1321)
T 4f4c_A 864 PNLRT---------------AIDFRFSTVIT-----TLVSMVAGIGLAFFYGWQMALLIIAI--LPIVAFGQYLRGRRFT 921 (1321)
T ss_dssp HHHHT---------------TTSHHHHHHHH-----HHHHHHHHHHHHHHHCHHHHHHHHHH--HHHHHHHHHHHTSCCS
T ss_pred HHHHH---------------HHHHHHHHHHH-----HHHHHHHHEEEEHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf 99999---------------99999999999-----86537777022137868999999998--8899999999999999
Q ss_pred CCCHHHHHHHCH-HHHHHHHH---HHHHCCCCCCCCCCCCCCCCCHHHHHHHC--CCCCCCCCHHHHHHHHHHHH-HHHH
Q ss_conf 210124261289-99999999---98541899655457898876168875306--86678852247699999999-9999
Q 000838 513 KKWWIWGYWCSP-LMYAQNAI---VANEFLGHSWRKFTPDSNEPLGVQVLKSR--GFFPDAYWYWLGLGALFGFV-LLLH 585 (1262)
Q Consensus 513 ~~~~~w~~~isp-~~y~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~~~~~~~l~~~~-~~~~ 585 (1262)
............ ..+..+.+ ..-..++..-. ........+... .......+.....+....+. +...
T Consensus 922 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 995 (1321)
T 4f4c_A 922 GKNVKSASEFADSGKIAIEAIENVRTVQALAREDT------FYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNT 995 (1321)
T ss_dssp SCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988898899999962798886141488------999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CC----C-CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999986302333-32----3-23334567899975213565210001000144322336888875555688987667
Q 000838 586 IAFTLALTFLNRGYL-YH----L-HFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWG 659 (1262)
Q Consensus 586 ~~~~~~l~~~~~~~~-~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1262)
+.+++....+..+.. .. . ..............................+.....
T Consensus 996 ~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l-------------------- 1055 (1321)
T 4f4c_A 996 CAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML-------------------- 1055 (1321)
T ss_dssp HHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_conf 999875788753765421478999999998778899999999999999999999899986--------------------
Q ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECC
Q ss_conf 78877531000002787666667877788881799963499982660233204557854773340799957809999959
Q 000838 660 RNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGV 739 (1262)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~ 739 (1262)
+..+ ..+........+.....+.|+|++++|+.. +..++|+|+|+.++|||.+||+||
T Consensus 1056 -----------~~~~-~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~ 1113 (1321)
T 4f4c_A 1056 -----------RKIS-KIDSLSLAGEKKKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGP 1113 (1321)
T ss_dssp -----------HCCC-SSCTTCCCSBCCCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECS
T ss_pred -----------HCCC-CCCCCCCCCCCCCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECC
T ss_conf -----------0766-577766778788888818999879857999----------988212451699889899999899
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 9983999999997899897158899997941780---0113548996379988999999999999988306999999999
Q 000838 740 SGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETR 816 (1262)
Q Consensus 740 sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~ 816 (1262)
||||||||+++|.|... +.+|+|.+||.+++. ..+++.++||+|++.++. .|+|||+.|.. .|.+.+++
T Consensus 1114 SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd~-- 1185 (1321)
T 4f4c_A 1114 SGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTMA-- 1185 (1321)
T ss_dssp TTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCHH--
T ss_pred CCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCCHH--
T ss_conf 99819999999956863--899789999998654999999854599878997327-23999974549---99999999--
Q ss_pred HHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999829964-------3233246888887898999999999999639998402088999999999999999999
Q 000838 817 KMFIEEIMELVELNP-------LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889 (1262)
Q Consensus 817 ~~~~~~~l~~l~l~~-------~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~ 889 (1262)
.++++++..++.+ --|+.+|.. ..+||||||||++|||||+++|+||+||||||+||+.++..|++.|++
T Consensus 1186 --ei~~Al~~a~l~~~I~~Lp~GldT~vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1186 --QVEEAARLANIHNFIAELPEGFETRVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp --HHHHHHHHTTCHHHHHTSTTTTCSEETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred --HHHHHHHHHCCHHHHHCCCCCCCCEECCC-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf --99999998298499971767899982388-915699999999999999717998999681115789999999999999
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 98589889999148998999986332
Q 000838 890 TVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 890 ~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
+. +|+|+|+++|+++ ....+|+.
T Consensus 1263 ~~-~~~TvI~IAHRLs--Ti~~aD~I 1285 (1321)
T 4f4c_A 1263 AR-EGRTCIVIAHRLN--TVMNADCI 1285 (1321)
T ss_dssp TS-SSSEEEEECSSSS--TTTTCSEE
T ss_pred HC-CCCEEEEECCCHH--HHHHCCEE
T ss_conf 73-9998999606899--99969999
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=556.96 Aligned_cols=202 Identities=26% Similarity=0.353 Sum_probs=158.1
Q ss_pred CCEEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 81799963499982660233204557854773340799957809999959998399999999789989715889999794
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY 769 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~ 769 (1262)
...+.++|++++++.. +...+|+|+|+.+++||++||+||||||||||+++|.|... +.+|+|.+||.
T Consensus 1028 ~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSS
T ss_pred CCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE
T ss_conf 7857999989977999----------98700203059976998899988999978999999946867--89977989999
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCC
Q ss_conf 1780---01135489963799889999999999999883069999999999999999998299-------6432332468
Q 000838 770 PKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-------NPLRQSLVGL 839 (1262)
Q Consensus 770 ~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~g~ 839 (1262)
+.+. ..+++.++||+|++.++ ..|++|++.+.... ...+.++ +.+.++..++ .+-.|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred ECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCC
T ss_conf 800078999970268987787406-66699997466877---8999999----999999839599997270424561178
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 8888789899999999999963999840208899999999999999999998589889999148998999986332
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 840 ~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
. ...||||||||++|||+|+++|++|+|||||+|||..++..+++.|++. ..|+|+|+++|+++. + ..+|+.
T Consensus 1168 ~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri 1239 (1284)
T 3g5u_A 1168 K-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLI 1239 (1284)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCEE
T ss_conf 8-8933899999999999997499999986875557999999999999986-799989999558799-9-809989
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=430.05 Aligned_cols=185 Identities=23% Similarity=0.272 Sum_probs=148.9
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++..+. . ..|+++++.+++||+++|+||||||||||+++|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEECEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE-----
T ss_conf 899913098744-------------3-489935153279989999999998999999999669888--8628999-----
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80011354899637998899999999999998830699999999999999999982996432332468888878989999
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 772 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 851 (1262)
.+.++|++|+....+.+||+|.+....... ....+.++++++.+++.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHH
T ss_conf -----027999805766778984999997531258-------778999999998769933754992-----237999999
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999963999840208899999999999999999998-589889999148998999986332
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 852 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
|++||++|+.+|++|+|||||+|||..++..+.+.|++++ +.|.|+|+++|+.. ++....|+.
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv 542 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRL 542 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEE
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999999974899899968744789999999999999999747989999909899-999869999
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=422.70 Aligned_cols=187 Identities=24% Similarity=0.259 Sum_probs=149.4
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.+++++..+. ...++.+++.+++||+++|+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred EEEECCEEEEEC--------------CEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE--
T ss_conf 699823399979--------------8899826646889989999999999899999999578889--9818999984--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80011354899637998899999999999998830699999999999999999982996432332468888878989999
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 772 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 851 (1262)
.++|++|+.......||+|++.+... ..... ....++++++.+++.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASK--DALST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCS--STTCT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHH--HCCCH----HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------56761400034547779999987553--11211----6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 99999999639998402088999999999999999999985-89889999148998999986332
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 852 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
|++||++|+.+|++|+|||||+|||..+...+++.|+++++ .|.|||+++|+.. ++....|+.
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri 456 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRI 456 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=422.34 Aligned_cols=185 Identities=24% Similarity=0.292 Sum_probs=147.8
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. . ..++++++.+++||+++|+||||||||||+++|+|...+ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEEEEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE-----
T ss_conf 899930799989-------------9-899907441289989999889999999999999679989--9718998-----
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80011354899637998899999999999998830699999999999999999982996432332468888878989999
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 772 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 851 (1262)
...++|++|+....+.+||.|.+......... ..+.++++++.+++.+..+..+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -----74699982677678888599999864036887-------8999999999749915653994-----448999999
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 99999999639998402088999999999999999999985-89889999148998999986332
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 852 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
|++||++|+.+|++|+|||||+|||..+...+.+.|+++++ .|.|||+++|+.. ++....|+.
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv 472 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRL 472 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEE
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999999972899899939801089999999999999999867989999939899-999968999
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=410.46 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=130.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9998379999978999898189899983347999889337987553127866444-477888998999999976228886
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~-d~l~~~lTVrE~L~f~a~l~~~~~ 79 (1262)
+++|+||||||||||+++|+|. . ++|.+... ...++|++|+ +..++.+||.|++.+ ...+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG---------~--i~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~--- 523 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG---------Q--VDGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVG--- 523 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT---------C--STTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCSS---
T ss_pred EEEEECCCCCCHHHHHHHHHCC---------C--CCCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH--HHCC---
T ss_conf 8999999998799999999489---------8--67976635---41699973564324557809999998--6127---
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 502348978999852999998546888785410110244699999981983-3344422488543365111004589999
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~-~~~dT~VG~~~~~~LSGGQKrRlsIA~a 158 (1262)
. +.+++.++..+||+ +..+..++ .||||||||++||++
T Consensus 524 ---~---------------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArA 562 (986)
T 2iw3_A 524 ---T---------------------------------KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARA 562 (986)
T ss_dssp ---C---------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHH
T ss_pred ---H---------------------------------HHHHHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHH
T ss_conf ---9---------------------------------99999999986998446439802-----079999999999999
Q ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEE-EECCCCHH
Q ss_conf 8559808787279855027999999999999856159989999348983599730035884698088-86680118
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV-YQGPRELV 233 (1262)
Q Consensus 159 L~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv-~~G~~~~l 233 (1262)
++.+|++++|||||+|||+.++..+++.|+. .+.|+++ ++|...++...+|++++|.+|+++ +.|+.++.
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHHCCEEEEEECCEEECCCCCHHHH
T ss_conf 9649999999797667999999999999986----7998999-979889999868999999799442677999999
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=404.01 Aligned_cols=173 Identities=21% Similarity=0.211 Sum_probs=136.7
Q ss_pred EEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 7733407999578-----09999959998399999999789989715889999794178001135489963799889999
Q 000838 719 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFV 793 (1262)
Q Consensus 719 ~il~~vs~~~~~G-----~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~l 793 (1262)
.+++++++.+++| |+++|+||||||||||+++|+|...+ .+|+ ... ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCC------CCC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--7885------866----77379860544445786
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCC
Q ss_conf 99999999988306999999999999999999829964323324688888789899999999999963999840208899
Q 000838 794 TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873 (1262)
Q Consensus 794 tv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts 873 (1262)
||+|.+.. ..+.. ... ...++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~--~~~~~-~~~----~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFK--KIRGQ-FLN----PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHH--HCSST-TTS----HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHH--HHHCC-CCC----HHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 69999987--75303-246----899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf 999999999999999998-5898899991489989999863326
Q 000838 874 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 874 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hqp~~~~~~~fd~~~ 916 (1262)
|||..+...+++.|+++. +.|.|||+++|+.. ++....|+.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvi 539 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVI 539 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEE
T ss_conf 899999999999999999757998999968899-9998689999
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=403.59 Aligned_cols=198 Identities=20% Similarity=0.262 Sum_probs=135.9
Q ss_pred CEEEECCCCCCHHHHH---------------------HHHHCCCCCCC-C---EEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9998379999978999---------------------89818989998-3---347999889337987553127866444
Q 000838 1 MTLLLGPPASGKTTFL---------------------LALAGKLDSSL-K---VSGRVTYNGHNMGEFVPQRTAAYISQH 55 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL---------------------~~L~G~~~~~~-~---~sG~V~i~G~~~~~~~~~~~i~yv~Q~ 55 (1262)
+++|+||||||||||+ +.+.|...|+. . ..|.|.++|.+.... .++.+++++|.
T Consensus 46 ~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~ 124 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRN-PRSTVGTVTEI 124 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC------CCBHHHHTTC
T ss_pred EEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCHHHCC-CHHCEEEEECH
T ss_conf 99998999999888715101232111000110024455530345677563213564157447201025-50000465112
Q ss_pred CC-------------------CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 47-------------------78889989999999762288865023489789998529999985468887854101102
Q 000838 56 DN-------------------HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116 (1262)
Q Consensus 56 d~-------------------l~~~lTVrE~L~f~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1262)
.. .++.+||+||+.+...+... ..+... ......+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~--------------~~~~~~~~ 179 (670)
T 3ux8_A 125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI--------------ARLILREI 179 (670)
T ss_dssp C-------------------------CC---------------------------------------------------C
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH--------------HHHHHHHH
T ss_conf 56677777531111234443334578599999975203643-----------145677--------------88889999
Q ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCE--EEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4469999998198333-44422488543365111004589999855980--87872798550279999999999998561
Q 000838 117 NVITDYYLKVLGLDNC-ADILVGDEMIRGISGGQKKRVTTGEMMVGPAL--AMFMDEISTGLDSSTTFQIVNCLRQNIHI 193 (1262)
Q Consensus 117 ~~~v~~~l~~l~L~~~-~dT~VG~~~~~~LSGGQKrRlsIA~aL~~~p~--IllLDEpTSgLDs~s~~~i~~~L~~~~~~ 193 (1262)
.+.. ..+..+||.+. .|..++ .|||||||||+|||||+.+|+ +++|||||+|||+.++.++++.|+.+..
T Consensus 180 ~~~~-~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~- 252 (670)
T 3ux8_A 180 RDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD- 252 (670)
T ss_dssp HHHH-HHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-
T ss_pred HHHH-HHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-
T ss_conf 9999-899975984344149700-----189999999999999962899878999798568999999999999999997-
Q ss_pred CCCEEEEEECCCCHHHHHHCCCEEEE------CCCEEEEECCCCHH
Q ss_conf 59989999348983599730035884------69808886680118
Q 000838 194 NSETAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELV 233 (1262)
Q Consensus 194 ~~~tvii~i~q~~~e~~~lfD~I~vL------~~G~iv~~G~~~~l 233 (1262)
.+.|+|+ ++|.... ...+|++++| .+|++++.|+.+++
T Consensus 253 ~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 253 LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHH
T ss_conf 4998999-9578799-962998999446665669889974089998
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=326.50 Aligned_cols=199 Identities=26% Similarity=0.392 Sum_probs=164.7
Q ss_pred CCEEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 81799963499982660233204557854773340799957809999959998399999999789989715889999794
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY 769 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~ 769 (1262)
...+.|+|++++++.. +.+.+|+|+|+.+++|+++||+||||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 8767999855407999----------98743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCC
Q ss_conf 1780---011354899637998899999999999998830699999999999999999982996-------432332468
Q 000838 770 PKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-------PLRQSLVGL 839 (1262)
Q Consensus 770 ~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~g~ 839 (1262)
+.+. ..+++.++||+|++.++ +.|++||+.|.. ++.+.+ .+.++++..++. +-.||.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK-----EGITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC-----TTCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC-----CCCHHH----HHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 501125999850466658753320-786167886415-----522099----9999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 888878989999999999996399984020889999999999999999999858988999914899899998633
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 840 ~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~ 914 (1262)
.+ ..||||||||++||||++++|+|++||||||+||+.++..+++.|+++. +|+|+|+++|+++ .....|+
T Consensus 551 ~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~ 621 (1321)
T 4f4c_A 551 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADL 621 (1321)
T ss_dssp SS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSE
T ss_pred CC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCE
T ss_conf 98-8777778799999998725999899845544688789999999999984-7988999736387--8986898
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=323.66 Aligned_cols=182 Identities=26% Similarity=0.394 Sum_probs=128.7
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCCC-CC---EEE------EEEEECCCCCCCCC----
Q ss_conf 773340799957809999959998399999---------99978998-97---158------89999794178001----
Q 000838 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YIT------GSIKISGYPKKHET---- 775 (1262)
Q Consensus 719 ~il~~vs~~~~~G~~~~i~G~sGsGKsTLl---------~~l~g~~~-~~---~~~------G~i~~~g~~~~~~~---- 775 (1262)
..|+++|+.+++|++++|+|+||||||||+ +.+.+... .+ ... +.+.++..+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred ----------------------------------------CCCEEEEECCCCCCCC------------------------
Q ss_conf ----------------------------------------1354899637998899------------------------
Q 000838 776 ----------------------------------------FARISGYCEQNDIHSP------------------------ 791 (1262)
Q Consensus 776 ----------------------------------------~~~~~~yv~q~~~~~~------------------------ 791 (1262)
..+..|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------999999999998830699999999999999999982996432332468888878989999999999996399
Q 000838 792 --------FVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 863 (1262)
Q Consensus 792 --------~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p 863 (1262)
.+|+.|++.|.... ....++.++++.+||.... .+.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---1687-1579999999999999996287
Q ss_pred ---CCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf ---9840208899999999999999999998589889999148998999986332
Q 000838 864 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 864 ---~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
++++|||||+|||..+...+++.|+++.+.|.|||+++|++. .....|+.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrI 877 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHI 877 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEE
T ss_conf 889789997988899999999999999999966998999937999--99729999
Done!