Query 000839
Match_columns 1260
No_of_seqs 410 out of 1665
Neff 3.8
Searched_HMMs 46136
Date Tue Apr 2 00:26:16 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1246 ArgA N-acetylglutamate 99.0 1E-09 2.2E-14 112.6 7.0 85 909-997 38-123 (153)
2 KOG0956 PHD finger protein AF1 98.9 5.2E-10 1.1E-14 132.8 4.4 113 720-832 7-189 (900)
3 PF13508 Acetyltransf_7: Acety 98.9 1.4E-08 3E-13 90.5 11.0 77 913-994 3-79 (79)
4 PF00583 Acetyltransf_1: Acety 98.9 1.1E-08 2.4E-13 89.9 9.7 74 919-993 2-83 (83)
5 PF13673 Acetyltransf_10: Acet 98.8 2.3E-08 5E-13 93.1 10.6 74 913-992 44-117 (117)
6 KOG1512 PHD Zn-finger protein 98.8 1.3E-09 2.8E-14 119.5 1.2 89 718-821 258-361 (381)
7 KOG1244 Predicted transcriptio 98.7 4.6E-09 9.9E-14 114.9 1.7 92 717-822 223-330 (336)
8 PRK10314 putative acyltransfer 98.7 1.1E-07 2.4E-12 96.4 11.2 80 917-997 52-134 (153)
9 PTZ00330 acetyltransferase; Pr 98.6 7.1E-08 1.5E-12 93.4 8.2 84 914-998 53-142 (147)
10 PRK10146 aminoalkylphosphonic 98.5 2.4E-07 5.2E-12 89.5 8.7 81 915-996 49-137 (144)
11 PRK03624 putative acetyltransf 98.5 3.5E-07 7.6E-12 86.4 8.8 81 914-996 46-129 (140)
12 PLN02706 glucosamine 6-phospha 98.5 5.3E-07 1.2E-11 88.5 10.1 82 914-996 54-143 (150)
13 PRK07922 N-acetylglutamate syn 98.5 5.6E-07 1.2E-11 92.4 9.6 79 916-997 48-127 (169)
14 KOG4443 Putative transcription 98.5 2.3E-08 5E-13 119.4 -0.6 149 650-834 36-220 (694)
15 cd02169 Citrate_lyase_ligase C 98.4 5.6E-07 1.2E-11 101.2 9.3 76 915-996 8-83 (297)
16 PF13527 Acetyltransf_9: Acety 98.4 1.8E-06 3.9E-11 82.2 10.5 111 870-995 10-127 (127)
17 PRK07757 acetyltransferase; Pr 98.4 1.5E-06 3.3E-11 85.5 9.8 78 917-997 45-122 (152)
18 KOG1473 Nucleosome remodeling 98.4 3.4E-08 7.4E-13 122.3 -2.3 146 590-761 240-389 (1414)
19 PRK09491 rimI ribosomal-protei 98.4 1.8E-06 3.9E-11 84.6 10.1 85 911-997 38-125 (146)
20 TIGR01575 rimI ribosomal-prote 98.4 2.2E-06 4.8E-11 80.3 9.8 80 916-997 34-116 (131)
21 PLN02825 amino-acid N-acetyltr 98.3 1.5E-06 3.4E-11 104.0 10.3 80 916-997 410-490 (515)
22 KOG4299 PHD Zn-finger protein 98.3 1.5E-07 3.2E-12 112.5 1.3 47 718-764 253-306 (613)
23 PRK10975 TDP-fucosamine acetyl 98.3 3.2E-06 7E-11 87.6 10.3 84 912-996 101-187 (194)
24 TIGR03827 GNAT_ablB putative b 98.3 3.7E-06 8E-11 92.1 10.9 84 913-997 158-245 (266)
25 TIGR01890 N-Ac-Glu-synth amino 98.3 2.7E-06 5.9E-11 99.3 10.4 79 917-997 326-405 (429)
26 TIGR02382 wecD_rffC TDP-D-fuco 98.2 4.7E-06 1E-10 86.5 10.1 80 916-996 102-184 (191)
27 TIGR00124 cit_ly_ligase [citra 98.2 4.2E-06 9.1E-11 95.6 10.2 82 911-998 29-110 (332)
28 PRK05279 N-acetylglutamate syn 98.2 4.8E-06 1E-10 97.4 10.6 80 916-997 337-417 (441)
29 COG5141 PHD zinc finger-contai 98.2 5.2E-07 1.1E-11 104.9 2.4 56 715-770 190-258 (669)
30 KOG1244 Predicted transcriptio 98.2 2.6E-07 5.7E-12 101.5 -0.4 79 648-761 245-329 (336)
31 PRK12308 bifunctional arginino 98.2 5.1E-06 1.1E-10 101.3 10.2 79 916-997 506-584 (614)
32 PHA00673 acetyltransferase dom 98.1 1.1E-05 2.5E-10 83.5 10.4 84 913-997 55-146 (154)
33 KOG4443 Putative transcription 98.1 8.3E-07 1.8E-11 106.5 1.9 89 717-818 17-114 (694)
34 PRK10140 putative acetyltransf 98.1 2.3E-05 5.1E-10 76.9 10.1 86 913-1000 51-144 (162)
35 PRK09831 putative acyltransfer 98.0 1.3E-05 2.8E-10 79.3 8.0 72 916-998 56-127 (147)
36 KOG1512 PHD Zn-finger protein 98.0 1.5E-06 3.3E-11 96.1 1.2 74 648-758 278-357 (381)
37 TIGR03448 mycothiol_MshD mycot 98.0 2.2E-05 4.7E-10 85.6 9.8 86 911-997 198-288 (292)
38 PRK13688 hypothetical protein; 98.0 2.9E-05 6.3E-10 80.0 9.6 75 918-998 50-134 (156)
39 TIGR02406 ectoine_EctA L-2,4-d 97.9 4.6E-05 9.9E-10 77.2 10.0 82 914-996 40-127 (157)
40 PF13420 Acetyltransf_4: Acety 97.9 9.4E-05 2E-09 72.6 11.3 76 920-997 58-139 (155)
41 KOG0954 PHD finger protein [Ge 97.9 4.8E-06 1E-10 100.8 2.6 56 715-770 268-334 (893)
42 COG0456 RimI Acetyltransferase 97.9 3.1E-05 6.8E-10 77.2 8.0 76 923-999 72-156 (177)
43 cd04301 NAT_SF N-Acyltransfera 97.9 5.8E-05 1.2E-09 60.5 7.8 60 917-976 3-64 (65)
44 KOG0955 PHD finger protein BR1 97.8 9.7E-06 2.1E-10 102.9 4.0 56 716-771 217-285 (1051)
45 TIGR03448 mycothiol_MshD mycot 97.8 7.2E-05 1.6E-09 81.6 10.0 81 914-997 47-128 (292)
46 TIGR03103 trio_acet_GNAT GNAT- 97.8 6.7E-05 1.4E-09 90.8 10.6 85 912-997 122-217 (547)
47 PF00628 PHD: PHD-finger; Int 97.8 5.3E-06 1.2E-10 69.7 0.7 42 720-761 1-49 (51)
48 smart00249 PHD PHD zinc finger 97.8 1.5E-05 3.4E-10 63.8 2.7 41 720-760 1-47 (47)
49 KOG0825 PHD Zn-finger protein 97.7 9.2E-06 2E-10 98.7 1.5 44 718-761 215-264 (1134)
50 PRK01346 hypothetical protein; 97.7 0.00012 2.5E-09 84.4 9.8 81 915-998 49-137 (411)
51 KOG3139 N-acetyltransferase [G 97.7 0.00016 3.5E-09 75.5 9.7 92 913-1005 57-154 (165)
52 KOG4323 Polycomb-like PHD Zn-f 97.6 3.2E-05 6.9E-10 91.3 3.8 99 718-823 83-225 (464)
53 KOG1973 Chromatin remodeling p 97.6 2E-05 4.4E-10 87.9 1.7 42 719-761 222-266 (274)
54 KOG3396 Glucosamine-phosphate 97.6 0.00016 3.4E-09 74.0 7.8 115 863-996 21-143 (150)
55 PHA01807 hypothetical protein 97.6 0.00015 3.2E-09 74.8 7.8 75 913-987 53-134 (153)
56 TIGR01686 FkbH FkbH-like domai 97.6 0.00019 4.2E-09 80.9 9.4 82 912-995 230-319 (320)
57 PRK10562 putative acetyltransf 97.6 0.00021 4.6E-09 70.4 8.4 76 915-997 50-125 (145)
58 PRK10514 putative acetyltransf 97.6 0.00027 5.9E-09 68.8 8.7 73 917-997 54-126 (145)
59 PRK15130 spermidine N1-acetylt 97.5 0.00048 1E-08 70.5 10.2 82 914-997 58-145 (186)
60 KOG4299 PHD Zn-finger protein 97.5 6.5E-05 1.4E-09 90.6 4.0 44 718-761 47-93 (613)
61 PF08445 FR47: FR47-like prote 97.5 0.00049 1.1E-08 64.3 8.7 75 921-997 6-82 (86)
62 KOG0383 Predicted helicase [Ge 97.5 2.6E-05 5.6E-10 96.0 0.2 50 714-763 43-94 (696)
63 PF13523 Acetyltransf_8: Acety 97.4 0.001 2.2E-08 65.8 10.9 87 910-997 45-141 (152)
64 PF13302 Acetyltransf_3: Acety 97.4 0.00095 2.1E-08 64.0 10.2 72 920-993 65-142 (142)
65 TIGR03585 PseH pseudaminic aci 97.4 0.0011 2.4E-08 65.1 10.3 80 916-998 54-139 (156)
66 PF15446 zf-PHD-like: PHD/FYVE 97.4 0.00016 3.4E-09 75.9 4.1 82 720-801 1-142 (175)
67 COG3393 Predicted acetyltransf 97.4 0.00056 1.2E-08 76.3 8.5 83 913-996 177-261 (268)
68 TIGR01211 ELP3 histone acetylt 97.3 0.00052 1.1E-08 83.0 8.5 78 919-997 420-516 (522)
69 COG2153 ElaA Predicted acyltra 97.3 0.00083 1.8E-08 69.5 8.4 83 915-998 52-137 (155)
70 COG5034 TNG2 Chromatin remodel 97.3 0.00013 2.9E-09 80.4 2.3 45 716-761 219-268 (271)
71 PRK10809 ribosomal-protein-S5- 97.2 0.0013 2.9E-08 67.8 9.1 83 913-997 77-166 (194)
72 PRK10151 ribosomal-protein-L7/ 97.1 0.0034 7.3E-08 63.9 9.9 77 919-997 73-155 (179)
73 PF13718 GNAT_acetyltr_2: GNAT 96.9 0.0043 9.3E-08 67.0 9.8 98 911-1009 25-190 (196)
74 COG1247 Sortase and related ac 96.9 0.0047 1E-07 65.4 9.6 109 911-1023 50-166 (169)
75 COG3153 Predicted acetyltransf 96.8 0.0067 1.5E-07 64.3 10.1 136 864-1022 8-151 (171)
76 KOG0383 Predicted helicase [Ge 96.7 0.0014 3.1E-08 81.2 4.3 69 735-820 1-91 (696)
77 cd04718 BAH_plant_2 BAH, or Br 96.3 0.0024 5.2E-08 66.2 2.7 30 739-768 1-32 (148)
78 PF08444 Gly_acyl_tr_C: Aralky 96.2 0.0094 2E-07 57.4 5.8 75 917-996 3-79 (89)
79 PF12568 DUF3749: Acetyltransf 96.2 0.026 5.7E-07 57.5 9.2 81 911-996 38-124 (128)
80 PF12746 GNAT_acetyltran: GNAT 96.1 0.027 5.9E-07 63.4 9.7 76 919-996 171-246 (265)
81 PF00628 PHD: PHD-finger; Int 96.0 0.0021 4.5E-08 54.2 0.6 48 762-821 2-49 (51)
82 smart00249 PHD PHD zinc finger 96.0 0.0066 1.4E-07 48.6 3.1 34 781-817 12-45 (47)
83 KOG0957 PHD finger protein [Ge 95.9 0.0029 6.3E-08 75.0 0.9 49 719-767 120-190 (707)
84 KOG0825 PHD Zn-finger protein 95.8 0.0029 6.4E-08 77.9 0.9 37 782-823 229-266 (1134)
85 KOG1973 Chromatin remodeling p 95.7 0.0037 8E-08 70.2 0.9 35 780-820 229-266 (274)
86 COG0454 WecD Histone acetyltra 95.5 0.017 3.7E-07 48.4 4.1 44 943-992 87-130 (156)
87 COG1670 RimL Acetyltransferase 95.4 0.083 1.8E-06 52.3 9.2 86 911-997 64-158 (187)
88 KOG3216 Diamine acetyltransfer 95.2 0.12 2.6E-06 54.4 9.9 121 867-997 17-146 (163)
89 PF13831 PHD_2: PHD-finger; PD 95.1 0.0024 5.2E-08 51.9 -2.1 34 728-761 2-36 (36)
90 KOG1245 Chromatin remodeling c 95.0 0.0049 1.1E-07 81.7 -0.9 45 717-761 1107-1156(1404)
91 KOG0957 PHD finger protein [Ge 94.9 0.0099 2.1E-07 70.7 1.1 44 718-761 544-596 (707)
92 COG1444 Predicted P-loop ATPas 94.8 0.037 8E-07 69.7 5.7 69 938-1008 532-604 (758)
93 KOG4323 Polycomb-like PHD Zn-f 94.7 0.011 2.4E-07 70.5 0.8 44 718-761 168-222 (464)
94 KOG3397 Acetyltransferases [Ge 94.4 0.061 1.3E-06 57.6 5.3 77 919-997 63-141 (225)
95 COG2388 Predicted acetyltransf 94.3 0.16 3.4E-06 50.0 7.6 73 911-987 15-87 (99)
96 PF14542 Acetyltransf_CG: GCN5 93.9 0.25 5.4E-06 46.0 7.8 56 918-974 4-59 (78)
97 KOG2488 Acetyltransferase (GNA 93.9 0.14 3E-06 55.6 6.8 84 913-997 93-182 (202)
98 COG3053 CitC Citrate lyase syn 93.9 0.2 4.3E-06 57.4 8.3 79 913-997 37-115 (352)
99 KOG3138 Predicted N-acetyltran 92.9 0.12 2.7E-06 55.7 4.6 83 936-1023 88-174 (187)
100 PF13480 Acetyltransf_6: Acety 92.8 0.64 1.4E-05 44.6 8.9 62 913-975 71-132 (142)
101 KOG4144 Arylalkylamine N-acety 92.6 0.1 2.2E-06 55.1 3.3 59 938-997 102-161 (190)
102 COG4552 Eis Predicted acetyltr 90.7 0.36 7.7E-06 56.6 5.4 85 906-997 34-127 (389)
103 KOG3235 Subunit of the major N 87.7 1.7 3.6E-05 46.6 7.2 83 920-1002 49-140 (193)
104 COG3981 Predicted acetyltransf 87.0 1.2 2.5E-05 48.0 5.7 69 913-983 70-143 (174)
105 KOG3234 Acetyltransferase, (GN 85.9 0.73 1.6E-05 49.0 3.5 56 938-994 70-128 (173)
106 COG5034 TNG2 Chromatin remodel 83.9 0.58 1.3E-05 52.7 1.9 35 781-822 232-269 (271)
107 COG1243 ELP3 Histone acetyltra 83.8 0.94 2E-05 54.8 3.6 64 930-997 446-509 (515)
108 PF01429 MBD: Methyl-CpG bindi 83.5 1 2.2E-05 42.1 3.0 58 404-465 11-71 (77)
109 PF06852 DUF1248: Protein of u 82.0 7.1 0.00015 42.4 9.0 83 914-997 48-137 (181)
110 KOG0955 PHD finger protein BR1 81.6 0.91 2E-05 59.5 2.6 34 780-820 233-266 (1051)
111 PF07227 DUF1423: Protein of u 80.3 2 4.4E-05 51.8 4.7 65 754-824 123-193 (446)
112 cd01396 MeCP2_MBD MeCP2, MBD1, 79.0 2.7 5.9E-05 39.7 4.2 57 404-465 7-65 (77)
113 TIGR03694 exosort_acyl putativ 77.8 14 0.0003 41.3 9.9 92 902-994 45-195 (241)
114 cd04264 DUF619-NAGS DUF619 dom 77.4 4.5 9.8E-05 39.9 5.3 57 906-966 5-63 (99)
115 KOG1081 Transcription factor N 76.1 2.2 4.7E-05 52.0 3.4 45 716-761 87-131 (463)
116 KOG1245 Chromatin remodeling c 76.0 1.2 2.5E-05 60.4 1.2 50 762-825 1111-1160(1404)
117 KOG1473 Nucleosome remodeling 73.3 0.6 1.3E-05 60.7 -2.2 45 717-761 427-477 (1414)
118 KOG0954 PHD finger protein [Ge 72.9 2.1 4.6E-05 54.0 2.3 46 762-821 274-319 (893)
119 PF01342 SAND: SAND domain; I 71.9 0.97 2.1E-05 43.1 -0.7 33 656-689 41-74 (82)
120 KOG1701 Focal adhesion adaptor 71.0 1.1 2.4E-05 53.5 -0.6 43 753-800 381-430 (468)
121 PF13832 zf-HC5HC2H_2: PHD-zin 70.6 2.7 5.9E-05 40.8 2.0 66 720-801 2-88 (110)
122 cd00122 MBD MeCP2, MBD1, MBD2, 70.2 6.5 0.00014 35.4 4.1 40 404-443 6-47 (62)
123 COG5141 PHD zinc finger-contai 69.0 2.3 4.9E-05 51.7 1.3 34 780-820 207-240 (669)
124 PF02474 NodA: Nodulation prot 68.1 7.3 0.00016 42.3 4.6 50 937-987 85-134 (196)
125 PF01233 NMT: Myristoyl-CoA:pr 66.7 27 0.00058 37.7 8.4 67 909-975 73-148 (162)
126 KOG4628 Predicted E3 ubiquitin 65.2 4.3 9.3E-05 47.9 2.5 45 719-764 230-277 (348)
127 PF01853 MOZ_SAS: MOZ/SAS fami 63.9 18 0.00038 39.8 6.6 85 868-969 26-112 (188)
128 PF14446 Prok-RING_1: Prokaryo 63.2 3.5 7.7E-05 37.0 1.1 29 719-747 6-38 (54)
129 smart00258 SAND SAND domain. 63.0 3.6 7.8E-05 38.9 1.1 40 649-689 22-65 (73)
130 COG5628 Predicted acetyltransf 59.5 42 0.00091 35.0 7.9 84 916-1004 40-131 (143)
131 KOG0956 PHD finger protein AF1 58.5 4.5 9.9E-05 50.9 1.2 36 779-821 18-55 (900)
132 KOG0804 Cytoplasmic Zn-finger 57.7 4.5 9.7E-05 48.9 1.0 40 718-761 175-218 (493)
133 TIGR03019 pepcterm_femAB FemAB 57.6 37 0.0008 38.9 8.2 81 915-996 197-280 (330)
134 cd04265 DUF619-NAGS-U DUF619 d 56.2 17 0.00036 36.1 4.4 43 924-966 20-63 (99)
135 PF13831 PHD_2: PHD-finger; PD 54.1 5.8 0.00013 32.6 0.8 32 781-817 2-33 (36)
136 PLN03238 probable histone acet 52.7 20 0.00043 41.6 5.0 61 909-969 125-187 (290)
137 PF14446 Prok-RING_1: Prokaryo 52.3 8.8 0.00019 34.6 1.7 34 759-800 5-38 (54)
138 PRK13834 putative autoinducer 49.5 1.1E+02 0.0025 33.6 9.9 92 902-994 42-162 (207)
139 KOG2779 N-myristoyl transferas 47.7 1.5E+02 0.0031 36.0 10.8 132 835-987 75-223 (421)
140 KOG1246 DNA-binding protein ju 47.1 19 0.00041 47.3 4.2 49 718-766 155-207 (904)
141 PLN03239 histone acetyltransfe 47.1 23 0.0005 42.1 4.5 29 939-967 215-243 (351)
142 cd04718 BAH_plant_2 BAH, or Br 46.9 9.3 0.0002 40.5 1.2 25 792-821 1-25 (148)
143 PRK00756 acyltransferase NodA; 46.5 28 0.00061 37.9 4.5 39 936-975 84-122 (196)
144 PF05301 Mec-17: Touch recepto 46.5 28 0.0006 36.0 4.4 62 945-1013 54-116 (120)
145 PTZ00064 histone acetyltransfe 46.4 23 0.00051 43.8 4.5 56 909-965 354-412 (552)
146 KOG2747 Histone acetyltransfer 46.4 17 0.00037 43.8 3.3 22 940-961 263-284 (396)
147 PLN00104 MYST -like histone ac 45.6 19 0.00042 44.0 3.6 56 909-964 276-333 (450)
148 KOG2535 RNA polymerase II elon 45.5 43 0.00094 40.0 6.2 66 927-996 479-546 (554)
149 KOG2036 Predicted P-loop ATPas 45.2 19 0.00041 46.1 3.6 29 938-966 615-643 (1011)
150 PF07897 DUF1675: Protein of u 42.7 10 0.00023 43.8 0.8 40 640-679 237-283 (284)
151 KOG4135 Predicted phosphogluco 42.6 47 0.001 35.8 5.4 58 938-996 108-169 (185)
152 PF10497 zf-4CXXC_R1: Zinc-fin 41.6 14 0.0003 36.9 1.4 35 736-770 36-81 (105)
153 COG3818 Predicted acetyltransf 40.2 58 0.0013 34.5 5.6 51 947-997 94-148 (167)
154 COG1107 Archaea-specific RecJ- 39.3 16 0.00036 45.8 1.8 35 718-761 68-102 (715)
155 PF11793 FANCL_C: FANCL C-term 39.2 13 0.00029 34.3 0.8 28 719-746 3-38 (70)
156 PF05502 Dynactin_p62: Dynacti 38.4 23 0.00049 43.7 2.8 30 729-761 4-33 (483)
157 PF13832 zf-HC5HC2H_2: PHD-zin 38.3 14 0.00031 35.9 0.9 30 718-747 55-87 (110)
158 KOG1829 Uncharacterized conser 37.2 19 0.00042 45.3 2.0 33 781-825 529-561 (580)
159 KOG2752 Uncharacterized conser 36.7 24 0.00053 41.4 2.5 22 780-801 145-167 (345)
160 PF15446 zf-PHD-like: PHD/FYVE 36.6 22 0.00048 38.5 2.1 34 762-801 2-35 (175)
161 PF13901 DUF4206: Domain of un 36.1 25 0.00055 38.4 2.5 37 718-761 152-196 (202)
162 PF12861 zf-Apc11: Anaphase-pr 34.9 12 0.00025 36.6 -0.3 37 724-761 38-78 (85)
163 KOG3612 PHD Zn-finger protein 34.0 30 0.00065 43.2 2.8 45 717-761 59-106 (588)
164 KOG1044 Actin-binding LIM Zn-f 33.7 46 0.001 41.9 4.3 58 942-999 428-489 (670)
165 PF04377 ATE_C: Arginine-tRNA- 32.2 1.8E+02 0.004 30.2 7.7 61 914-975 40-100 (128)
166 PRK04023 DNA polymerase II lar 31.5 30 0.00065 45.9 2.4 34 717-761 625-658 (1121)
167 PF13771 zf-HC5HC2H: PHD-like 30.9 24 0.00052 33.0 1.1 30 718-747 36-68 (90)
168 PF13880 Acetyltransf_13: ESCO 30.3 41 0.0009 31.7 2.5 27 940-966 8-34 (70)
169 KOG3576 Ovo and related transc 29.9 17 0.00036 40.6 -0.1 63 728-799 115-189 (267)
170 smart00391 MBD Methyl-CpG bind 29.0 72 0.0016 30.3 3.9 35 404-438 8-45 (77)
171 smart00547 ZnF_RBZ Zinc finger 28.2 36 0.00078 25.4 1.4 9 753-761 1-9 (26)
172 COG0143 MetG Methionyl-tRNA sy 28.1 31 0.00068 43.3 1.7 16 785-800 157-172 (558)
173 PF13639 zf-RING_2: Ring finge 26.3 4.8 0.0001 33.2 -3.9 40 719-761 1-44 (44)
174 PF00765 Autoind_synth: Autoin 25.4 3.9E+02 0.0085 29.0 9.1 89 905-995 37-153 (182)
175 COG5027 SAS2 Histone acetyltra 25.0 34 0.00074 40.8 1.2 23 938-960 263-285 (395)
176 PF03358 FMN_red: NADPH-depend 24.9 1.6E+02 0.0035 29.6 5.8 71 940-1010 1-75 (152)
177 KOG1632 Uncharacterized PHD Zn 24.7 41 0.00088 40.0 1.7 60 782-845 74-135 (345)
178 PLN03086 PRLI-interacting fact 24.3 24 0.00052 44.4 -0.2 32 647-681 405-436 (567)
179 PF07943 PBP5_C: Penicillin-bi 24.0 87 0.0019 29.1 3.5 28 920-947 61-88 (91)
180 PF13771 zf-HC5HC2H: PHD-like 22.9 42 0.00091 31.4 1.2 30 762-802 39-70 (90)
181 PF00641 zf-RanBP: Zn-finger i 22.2 30 0.00065 26.9 0.0 10 752-761 2-11 (30)
182 PRK14559 putative protein seri 22.2 61 0.0013 41.6 2.7 43 730-792 1-50 (645)
183 KOG1169 Diacylglycerol kinase 21.9 42 0.00092 42.7 1.2 77 718-800 116-211 (634)
184 KOG0269 WD40 repeat-containing 21.7 48 0.001 42.9 1.6 42 749-800 763-810 (839)
185 KOG1734 Predicted RING-contain 21.3 34 0.00073 39.6 0.2 48 700-747 205-263 (328)
186 KOG1632 Uncharacterized PHD Zn 21.2 67 0.0015 38.2 2.6 71 729-799 74-156 (345)
187 PLN02400 cellulose synthase 20.6 1E+02 0.0022 41.7 4.2 45 716-761 34-85 (1085)
188 PF05687 DUF822: Plant protein 20.2 80 0.0017 33.8 2.6 24 395-434 47-70 (150)
No 1
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.96 E-value=1e-09 Score=112.56 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=75.6
Q ss_pred cccccEEEEEeeCCeEEEEEEEE-EecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhH
Q 000839 909 NYSGFYTAILERGDEIISAASIR-FHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1260)
Q Consensus 909 nfrGFYt~VLe~~~eVVsaAslR-V~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt 987 (1260)
++..|+++ |.+|.||+||.++ +.+.+++||+.|||.|+||++|+|..|+..|+..++.+|++++|+-+. -.+-|-
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt--~~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT--RSPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec--ccHHHH
Confidence 45667665 8899999999999 899999999999999999999999999999999999999999997775 334555
Q ss_pred hccCceeccH
Q 000839 988 RVFGFTSLEE 997 (1260)
Q Consensus 988 ~kFGF~~v~~ 997 (1260)
.++||+.++.
T Consensus 114 ~~~GF~~vd~ 123 (153)
T COG1246 114 AERGFTRVDK 123 (153)
T ss_pred HHcCCeECcc
Confidence 6899999986
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.93 E-value=5.2e-10 Score=132.78 Aligned_cols=113 Identities=26% Similarity=0.608 Sum_probs=80.8
Q ss_pred ccccccCCC-----CceeeCC--CCCccCCCcCCCCCCCCCCCCCCCcc---------ccccCCCCCCCCC---------
Q 000839 720 TCGICGDGG-----DLICCDG--CPSTFHQSCLDIQMLPPGDWHCPNCT---------CKFCGLAGEDDAE--------- 774 (1260)
Q Consensus 720 ~C~VCgdgG-----dLLcCD~--CpraFH~~CL~~~~vPeGdW~Cp~C~---------C~~CG~~~~ds~e--------- 774 (1260)
-|.||.|.. -|++||+ |.-+.|+.|+++..||.|+|||..|. |.+|--.++....
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 588998743 4999996 99999999999999999999999995 6666432221100
Q ss_pred ------------------------------------------CCCCCCCceeeCC--cchhhhcccchhccccccccc-C
Q 000839 775 ------------------------------------------GDDTTTSALLPCA--MCEKKYHKLCMQEMDALSDNL-T 809 (1260)
Q Consensus 775 ------------------------------------------ed~~S~~~LL~Cd--QCeR~YHv~CL~~~d~~~~~~-~ 809 (1260)
+.....+..+.|+ -|.+.||+.|.+....++++. .
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn 166 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGN 166 (900)
T ss_pred EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccc
Confidence 0011223457775 499999999999777677665 2
Q ss_pred CCcceeeCCcchhHHHHHHhHhc
Q 000839 810 GLVTSFCGRKCQELSEHLQKYLG 832 (1260)
Q Consensus 810 ~~~~WFCsk~CkeI~e~LQkLLG 832 (1260)
..++...|.+|+..|.+|.+--.
T Consensus 167 ~~dNVKYCGYCk~HfsKlkk~~~ 189 (900)
T KOG0956|consen 167 ISDNVKYCGYCKYHFSKLKKSPA 189 (900)
T ss_pred ccccceechhHHHHHHHhhcCCC
Confidence 33444444699999999986543
No 3
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.89 E-value=1.4e-08 Score=90.53 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=66.8
Q ss_pred cEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCc
Q 000839 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 992 (1260)
-+.++++.+++|||++.+.-.+ +.+.|..|||.|+|||||+|+.||..+++.+.. ..+++-+.+.++++|+ ++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTE
T ss_pred cEEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcC
Confidence 3567789999999999997665 589999999999999999999999999888854 5567888899999999 8999
Q ss_pred ee
Q 000839 993 TS 994 (1260)
Q Consensus 993 ~~ 994 (1260)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 4
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.88 E-value=1.1e-08 Score=89.93 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=67.9
Q ss_pred eeCCeEEEEEEEEEecC-----ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhh---HHHHhHhcc
Q 000839 919 ERGDEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTWTRVF 990 (1260)
Q Consensus 919 e~~~eVVsaAslRV~G~-----~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e---a~~~Wt~kF 990 (1260)
+.+|+|||++.+++... ..+.|-.++|.++|||||+|+.|++.+++.++..|+..|++...++ +..+|. ++
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 67999999999999887 4999999999999999999999999999999999999999877765 558898 89
Q ss_pred Cce
Q 000839 991 GFT 993 (1260)
Q Consensus 991 GF~ 993 (1260)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 5
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.83 E-value=2.3e-08 Score=93.08 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=65.3
Q ss_pred cEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCc
Q 000839 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 992 (1260)
...+|++.+++|||.+.++ .-++|..+.|.|+|||+|+|++||.++++.++. |++.|++.+...+..+|. ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 5677889999999999986 346699999999999999999999999999988 999999999999999999 7998
No 6
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.79 E-value=1.3e-09 Score=119.53 Aligned_cols=89 Identities=22% Similarity=0.512 Sum_probs=71.5
Q ss_pred CcccccccCCC---------CceeeCCCCCccCCCcCCCCC-----CCCCCCCCCCcc-ccccCCCCCCCCCCCCCCCCc
Q 000839 718 DDTCGICGDGG---------DLICCDGCPSTFHQSCLDIQM-----LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSA 782 (1260)
Q Consensus 718 dD~C~VCgdgG---------dLLcCD~CpraFH~~CL~~~~-----vPeGdW~Cp~C~-C~~CG~~~~ds~eed~~S~~~ 782 (1260)
...|.+|-++- .+|+|..|.-++|++|+..+. +-...|.|..|. |.+|+.+.... .
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~---------E 328 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIES---------E 328 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccch---------h
Confidence 35788886642 499999999999999998642 445789999998 99999987643 4
Q ss_pred eeeCCcchhhhcccchhcccccccccCCCcceeeCCcch
Q 000839 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1260)
Q Consensus 783 LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~Ck 821 (1260)
+++|+.|+|.||..|..... .+.+.|+|--.|.
T Consensus 329 ~~FCD~CDRG~HT~CVGL~~------lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 329 HLFCDVCDRGPHTLCVGLQD------LPRGEWICDMRCR 361 (381)
T ss_pred eeccccccCCCCcccccccc------ccCccchhhhHHH
Confidence 89999999999999998432 3568999965553
No 7
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.70 E-value=4.6e-09 Score=114.89 Aligned_cols=92 Identities=28% Similarity=0.712 Sum_probs=72.2
Q ss_pred CCcccccccC----------CCCceeeCCCCCccCCCcCCCC-----CCCCCCCCCCCcc-ccccCCCCCCCCCCCCCCC
Q 000839 717 NDDTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTT 780 (1260)
Q Consensus 717 ndD~C~VCgd----------gGdLLcCD~CpraFH~~CL~~~-----~vPeGdW~Cp~C~-C~~CG~~~~ds~eed~~S~ 780 (1260)
+..+|-.|-. +.+|+.|..|+++=|+.||... .|-...|+|.+|. |.+||....+
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsend--------- 293 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEND--------- 293 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCC---------
Confidence 3467888842 4579999999999999999864 2566889999998 8889876543
Q ss_pred CceeeCCcchhhhcccchhcccccccccCCCcceeeCCcchh
Q 000839 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1260)
Q Consensus 781 ~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~Cke 822 (1260)
.++++|+-|+|.||..||.+ +...++.+.|-| ..|.+
T Consensus 294 dqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~ 330 (336)
T KOG1244|consen 294 DQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLE 330 (336)
T ss_pred ceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHH
Confidence 46999999999999999985 334456789998 45543
No 8
>PRK10314 putative acyltransferase; Provisional
Probab=98.69 E-value=1.1e-07 Score=96.37 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=70.1
Q ss_pred EEeeCCeEEEEEEEEEecC--ceeEeeeeeeecccccCChhHHHHHHHHHHHhhc-CccEEEecchhhHHHHhHhccCce
Q 000839 917 ILERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAELMHTWTRVFGFT 993 (1260)
Q Consensus 917 VLe~~~eVVsaAslRV~G~--~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~L-gVe~LvlpA~~ea~~~Wt~kFGF~ 993 (1260)
++..++++||+|.+...+. ..++|--|||.++|||||+|+.||.++++.++.. +...++|.|...+..+|. +|||.
T Consensus 52 ~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k~GF~ 130 (153)
T PRK10314 52 LGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-SFGFI 130 (153)
T ss_pred EEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-HCCCE
Confidence 3456899999999876543 3578999999999999999999999999998875 788999999999999999 89999
Q ss_pred eccH
Q 000839 994 SLEE 997 (1260)
Q Consensus 994 ~v~~ 997 (1260)
++.+
T Consensus 131 ~~g~ 134 (153)
T PRK10314 131 PVTE 134 (153)
T ss_pred ECCC
Confidence 9986
No 9
>PTZ00330 acetyltransferase; Provisional
Probab=98.65 E-value=7.1e-08 Score=93.42 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=72.9
Q ss_pred EEEEEeeCCeEEEEEEEEEe------cCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhH
Q 000839 914 YTAILERGDEIISAASIRFH------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1260)
Q Consensus 914 Yt~VLe~~~eVVsaAslRV~------G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt 987 (1260)
+.++.+.+|++||.+.+.+. +...++|--+.+.++|||||+|+.|+..+++.++..|+.+|++.+...+..+|+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 45555688999999988653 223578888999999999999999999999999999999999999999999998
Q ss_pred hccCceeccHH
Q 000839 988 RVFGFTSLEES 998 (1260)
Q Consensus 988 ~kFGF~~v~~~ 998 (1260)
++||..+...
T Consensus 133 -k~GF~~~~~~ 142 (147)
T PTZ00330 133 -KLGFRACERQ 142 (147)
T ss_pred -HCCCEEeceE
Confidence 8999998753
No 10
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.55 E-value=2.4e-07 Score=89.48 Aligned_cols=81 Identities=9% Similarity=0.039 Sum_probs=69.0
Q ss_pred EEEEeeCCeEEEEEEEEEec-----CceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHh
Q 000839 915 TAILERGDEIISAASIRFHG-----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTW 986 (1260)
Q Consensus 915 t~VLe~~~eVVsaAslRV~G-----~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~W 986 (1260)
.+|++.++++||++.+++.. ...++|--|+|.|+|||||+|+.||..+++.++..|+..+.|... ..|..+|
T Consensus 49 ~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY 128 (144)
T PRK10146 49 YHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFY 128 (144)
T ss_pred EEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHH
Confidence 34567899999999987642 235789899999999999999999999999999999999988765 4789999
Q ss_pred HhccCceecc
Q 000839 987 TRVFGFTSLE 996 (1260)
Q Consensus 987 t~kFGF~~v~ 996 (1260)
. ++||....
T Consensus 129 ~-~~Gf~~~~ 137 (144)
T PRK10146 129 L-REGYEQSH 137 (144)
T ss_pred H-HcCCchhh
Confidence 9 89997664
No 11
>PRK03624 putative acetyltransferase; Provisional
Probab=98.52 E-value=3.5e-07 Score=86.38 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=68.1
Q ss_pred EEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhHhcc
Q 000839 914 YTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTRVF 990 (1260)
Q Consensus 914 Yt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~Wt~kF 990 (1260)
+.+|+..++++||.+.+...+ ..+.+..|+|.++|||||+|+.|+..++..++.+|+.++++-.. +.+..+|. ++
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-AL 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-Hc
Confidence 455667889999999887544 45778889999999999999999999999999999999887655 45788897 89
Q ss_pred Cceecc
Q 000839 991 GFTSLE 996 (1260)
Q Consensus 991 GF~~v~ 996 (1260)
||+..+
T Consensus 124 GF~~~~ 129 (140)
T PRK03624 124 GYEEQD 129 (140)
T ss_pred CCcccc
Confidence 999765
No 12
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.51 E-value=5.3e-07 Score=88.46 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=68.4
Q ss_pred EEEEEee--CCeEEEEEEEEEec------CceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHH
Q 000839 914 YTAILER--GDEIISAASIRFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHT 985 (1260)
Q Consensus 914 Yt~VLe~--~~eVVsaAslRV~G------~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~ 985 (1260)
+.+|.+. +++|||.+.+++.. ..++.|--|+|.++|||||+|+.|+.++++.++.+|+++|++...++...+
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444444 68999999886432 255677779999999999999999999999999999999999988888899
Q ss_pred hHhccCceecc
Q 000839 986 WTRVFGFTSLE 996 (1260)
Q Consensus 986 Wt~kFGF~~v~ 996 (1260)
|. ++||....
T Consensus 134 y~-k~GF~~~g 143 (150)
T PLN02706 134 YE-KCGYVRKE 143 (150)
T ss_pred HH-HCcCEEeh
Confidence 98 89998753
No 13
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.48 E-value=5.6e-07 Score=92.42 Aligned_cols=79 Identities=14% Similarity=0.253 Sum_probs=69.9
Q ss_pred EEEe-eCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCcee
Q 000839 916 AILE-RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1260)
Q Consensus 916 ~VLe-~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1260)
+|++ .++++||.+.+.+.....++|..++|.++|||+|+|+.|++++++.++..|+.+|++... +..+|+ |+||..
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCEE
Confidence 3556 889999999998878888999999999999999999999999999999999999987543 478898 899999
Q ss_pred ccH
Q 000839 995 LEE 997 (1260)
Q Consensus 995 v~~ 997 (1260)
+..
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 764
No 14
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.47 E-value=2.3e-08 Score=119.38 Aligned_cols=149 Identities=22% Similarity=0.491 Sum_probs=95.0
Q ss_pred cccCCCCceeeccceeeccCCcccCCceeeeccCCcchhhhhHhhhcccccccccCCcccCCCCCCCCCcccccccCCC-
Q 000839 650 IHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGG- 728 (1260)
Q Consensus 650 I~C~CC~kvfSpSeFEaHAGsk~rqPy~nIyLedG~SLleCqieawnkq~~sEk~G~~~V~~dgdd~ndD~C~VCgdgG- 728 (1260)
..|.+|.+.||+.+....+- +.-|..||.++.| .+|..|+..|
T Consensus 36 ~ac~~c~~~yH~~cvt~~~~--------~~~l~~gWrC~~c----------------------------rvCe~c~~~gD 79 (694)
T KOG4443|consen 36 LACSDCGQKYHPYCVTSWAQ--------HAVLSGGWRCPSC----------------------------RVCEACGTTGD 79 (694)
T ss_pred hhhhhhcccCCcchhhHHHh--------HHHhcCCcccCCc----------------------------eeeeeccccCC
Confidence 47999999999888643221 1224456766655 3688887555
Q ss_pred --CceeeCCCCCccCCCcCCCCC--CCCCCCCCCCcc-ccccCCCCCCC--------CCCCC----------------CC
Q 000839 729 --DLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT-CKFCGLAGEDD--------AEGDD----------------TT 779 (1260)
Q Consensus 729 --dLLcCD~CpraFH~~CL~~~~--vPeGdW~Cp~C~-C~~CG~~~~ds--------~eed~----------------~S 779 (1260)
.+++|+.|+-+||.+|..|+. +|.|+|+|+.|. |..|....... .+... ..
T Consensus 80 ~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~cPvc~~~Y~~~e 159 (694)
T KOG4443|consen 80 PKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYCPVCLIVYQDSE 159 (694)
T ss_pred cccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccCchHHHhhhhcc
Confidence 599999999999999999874 999999999997 77776433220 00000 00
Q ss_pred CCceeeCCcchhhhcccchhcccccccc--c-CCCcceeeCCcch---hHHHHHHhHhccc
Q 000839 780 TSALLPCAMCEKKYHKLCMQEMDALSDN--L-TGLVTSFCGRKCQ---ELSEHLQKYLGVK 834 (1260)
Q Consensus 780 ~~~LL~CdQCeR~YHv~CL~~~d~~~~~--~-~~~~~WFCsk~Ck---eI~e~LQkLLGvk 834 (1260)
...++.|++|.+|-|..|..-.+.-... . ..+....|-.+|. .|...|++++-.+
T Consensus 160 ~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR~es~qvKdi~~~vqe~~~~k 220 (694)
T KOG4443|consen 160 SLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCRGESYQVKDISDALQETWKAK 220 (694)
T ss_pred chhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceeehhhhhhhhHHHHHHhhcchh
Confidence 1235788999999999998643211000 0 1223333433332 5667788776544
No 15
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.44 E-value=5.6e-07 Score=101.21 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=68.7
Q ss_pred EEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCcee
Q 000839 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1260)
Q Consensus 915 t~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1260)
.+|.+.+++|||++.+. + .+|..|||.|+|||||+|+.||+++++.++..|+.+++|-+...+.++|. ++||..
T Consensus 8 ~~v~~~~~~iVG~~~l~--~---~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~ 81 (297)
T cd02169 8 VGIFDDAGELIATGSIA--G---NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKE 81 (297)
T ss_pred EEEEEECCEEEEEEEec--c---CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEE
Confidence 44456789999999884 2 47899999999999999999999999999999999999999999999998 999998
Q ss_pred cc
Q 000839 995 LE 996 (1260)
Q Consensus 995 v~ 996 (1260)
+.
T Consensus 82 ~~ 83 (297)
T cd02169 82 LA 83 (297)
T ss_pred ec
Confidence 88
No 16
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.40 E-value=1.8e-06 Score=82.16 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=77.5
Q ss_pred hhhhhhhhcccccccccCCCCCchhhHHHhhcCCCCCcccccccEEEEEeeCCeEEEEEEEEEe-----cC--ceeEeee
Q 000839 870 LAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRFH-----GT--QLAEMPF 942 (1260)
Q Consensus 870 LAvALtIm~ECFdPIiD~rSGrDLIpdmVYn~GSnFkRLnfrGFYt~VLe~~~eVVsaAslRV~-----G~--~lAEmPl 942 (1260)
......++.+||.+-..+. ..+-|. ..-+..-+++|.+.+++|||.+.+-.+ |. .++-|=-
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~------~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~ 77 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYF------RNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGD 77 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHH------HHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhh------hcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence 4445567778887554332 112220 001122356777889999998876433 54 5799999
Q ss_pred eeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceec
Q 000839 943 IGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1260)
Q Consensus 943 vAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v 995 (1260)
|||.|+|||||+++.||.++++.++..|+..+++-+ ....+|. +|||..+
T Consensus 78 v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~-~~G~~~~ 127 (127)
T PF13527_consen 78 VAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYR-RFGFEYA 127 (127)
T ss_dssp EEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHH-HTTEEEE
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhh-cCCCEEC
Confidence 999999999999999999999999999999999877 3467886 8999864
No 17
>PRK07757 acetyltransferase; Provisional
Probab=98.39 E-value=1.5e-06 Score=85.50 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=68.7
Q ss_pred EEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceecc
Q 000839 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1260)
Q Consensus 917 VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v~ 996 (1260)
++..++++||.+.+.+.+...++|-.|+|.|+|||+|+|+.|+.++++.+...|+.++++-. .+..+|. |+||+++.
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~-k~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFE-KLGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHH-HCCCEEcc
Confidence 34578999999999999989999999999999999999999999999999999999987543 2457787 89999987
Q ss_pred H
Q 000839 997 E 997 (1260)
Q Consensus 997 ~ 997 (1260)
.
T Consensus 122 ~ 122 (152)
T PRK07757 122 K 122 (152)
T ss_pred c
Confidence 6
No 18
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=98.38 E-value=3.4e-08 Score=122.31 Aligned_cols=146 Identities=25% Similarity=0.519 Sum_probs=89.6
Q ss_pred ecccCCCCCCCCCCCccCCCCchhh--hhhhccCceeccceEEEeeccccceeeeeeEecCCcccCCCCceeeccceeec
Q 000839 590 IRNSNVGPNSETDGFVPYAGKLTLL--SWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIH 667 (1260)
Q Consensus 590 ~R~s~k~~~s~~dg~vP~~~krTVL--SwLID~G~V~~~~kV~Y~n~~~~~v~L~G~It~dGI~C~CC~kvfSpSeFEaH 667 (1260)
.|..-.+.+-.+++|-|.+.|.+|- -+|||.-+|++ +|+-|++.++-.-.--...|+ .|..|
T Consensus 240 LrA~lr~eD~~~Thfs~~d~KdsvnI~l~liD~lTWPe--------------vLrqY~ea~~~ad~~v~~~~n--~fv~~ 303 (1414)
T KOG1473|consen 240 LRALLREEDRLSTHFSPLDSKDSVNIDLYLIDTLTWPE--------------VLRQYFEADKHADGPVWDIFN--PFVVE 303 (1414)
T ss_pred HHHHhhhhhhcccccCccccccceeeeeehhccccHHH--------------HHHHHHHhccccCcchhhhhc--ccccc
Confidence 5666667788899999999998873 36999999874 355555554410000001111 23222
Q ss_pred cCCcccCCceeeeccCCcchhhhhHhhhcccccccccCCcccCCCCCCCCCcccccccCCCCceeeCCCCCccCCCcCCC
Q 000839 668 AGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDI 747 (1260)
Q Consensus 668 AGsk~rqPy~nIyLedG~SLleCqieawnkq~~sEk~G~~~V~~dgdd~ndD~C~VCgdgGdLLcCD~CpraFH~~CL~~ 747 (1260)
-- .||.-| ++-.-++|.+.+.+.....+.. .+..+++..-+|.|.+|.+.|+++||..||+.||..|..+
T Consensus 304 ~e----Y~~~pv--~~klkILQ~L~Dq~l~~~s~R~----e~~se~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~h 373 (1414)
T KOG1473|consen 304 DE----YPYRPV--SNKLKILQFLCDQFLTVNSLRD----EIDSEGEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFH 373 (1414)
T ss_pred cc----ccccch--hhhHHHHHHHHHHHHHHHHHHH----HHhcccceeecccccccCcccceeecccCCceEEeeecCC
Confidence 22 233222 2223344443332211110000 0122344456799999999999999999999999999998
Q ss_pred CC--CCCCCCCCCCcc
Q 000839 748 QM--LPPGDWHCPNCT 761 (1260)
Q Consensus 748 ~~--vPeGdW~Cp~C~ 761 (1260)
|. +|...|.|.-|.
T Consensus 374 P~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 374 PRFAVPSAFWECEVCN 389 (1414)
T ss_pred ccccCCCccchhhhhh
Confidence 74 899999999886
No 19
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.38 E-value=1.8e-06 Score=84.60 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=70.4
Q ss_pred cccEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecc---hhhHHHHhH
Q 000839 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPA---IAELMHTWT 987 (1260)
Q Consensus 911 rGFYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA---~~ea~~~Wt 987 (1260)
.+++..+++.++++||.+.++.... .+++-.|+|.++|||||+|+.|+..+++.+...|+..+++.. -..+..+|.
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~ 116 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE 116 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH
Confidence 3455556678899999999986654 466778899999999999999999999999999999988854 345778888
Q ss_pred hccCceeccH
Q 000839 988 RVFGFTSLEE 997 (1260)
Q Consensus 988 ~kFGF~~v~~ 997 (1260)
++||+.+..
T Consensus 117 -k~Gf~~~~~ 125 (146)
T PRK09491 117 -SLGFNEVTI 125 (146)
T ss_pred -HcCCEEeee
Confidence 899997764
No 20
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.36 E-value=2.2e-06 Score=80.30 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=68.1
Q ss_pred EEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEec---chhhHHHHhHhccCc
Q 000839 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP---AIAELMHTWTRVFGF 992 (1260)
Q Consensus 916 ~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvlp---A~~ea~~~Wt~kFGF 992 (1260)
+++..++++||.+.+++.. ....+-.++|.++|||||+|+.|+.++++.+...++..+++. +-+.+..+|+ ++||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcCC
Confidence 4455689999999987644 457788899999999999999999999999999999999984 4556788998 8999
Q ss_pred eeccH
Q 000839 993 TSLEE 997 (1260)
Q Consensus 993 ~~v~~ 997 (1260)
+.+..
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98764
No 21
>PLN02825 amino-acid N-acetyltransferase
Probab=98.34 E-value=1.5e-06 Score=104.00 Aligned_cols=80 Identities=24% Similarity=0.267 Sum_probs=69.9
Q ss_pred EEEeeCCeEEEEEEEEEecC-ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCcee
Q 000839 916 AILERGDEIISAASIRFHGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1260)
Q Consensus 916 ~VLe~~~eVVsaAslRV~G~-~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1260)
+|++.+++||++|++..+.. ..|||=.|||.|+|||+|+|+.||+++|+.++.+|+++|++-. ..+..+|. ++||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCEE
Confidence 45689999999999876654 6899999999999999999999999999999999999999866 45667666 899999
Q ss_pred ccH
Q 000839 995 LEE 997 (1260)
Q Consensus 995 v~~ 997 (1260)
...
T Consensus 488 ~~~ 490 (515)
T PLN02825 488 CSI 490 (515)
T ss_pred eCh
Confidence 775
No 22
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.32 E-value=1.5e-07 Score=112.47 Aligned_cols=47 Identities=51% Similarity=1.363 Sum_probs=42.5
Q ss_pred CcccccccCCCCc---eeeCCCCCccCCCcCCCC----CCCCCCCCCCCccccc
Q 000839 718 DDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQ----MLPPGDWHCPNCTCKF 764 (1260)
Q Consensus 718 dD~C~VCgdgGdL---LcCD~CpraFH~~CL~~~----~vPeGdW~Cp~C~C~~ 764 (1260)
.++|..|+..|.+ ||||+||.+||+.||.|| .+|.|.|+|++|.|+.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 5699999998876 999999999999999987 3899999999998764
No 23
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.30 E-value=3.2e-06 Score=87.56 Aligned_cols=84 Identities=11% Similarity=0.037 Sum_probs=70.9
Q ss_pred ccEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhHh
Q 000839 912 GFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTR 988 (1260)
Q Consensus 912 GFYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~Wt~ 988 (1260)
.++.++.+.++++||.+.+.......++|-.+++.++|||||+|+.|+..+++.++..|+.++++... +.+..+|.
T Consensus 101 ~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye- 179 (194)
T PRK10975 101 HQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI- 179 (194)
T ss_pred CcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-
Confidence 34444556678999999998766667899999999999999999999999999999999999987644 45788887
Q ss_pred ccCceecc
Q 000839 989 VFGFTSLE 996 (1260)
Q Consensus 989 kFGF~~v~ 996 (1260)
++||....
T Consensus 180 k~Gf~~~~ 187 (194)
T PRK10975 180 RSGANIES 187 (194)
T ss_pred HCCCeEeE
Confidence 89999754
No 24
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.29 E-value=3.7e-06 Score=92.05 Aligned_cols=84 Identities=24% Similarity=0.236 Sum_probs=70.0
Q ss_pred cEEEEEeeCCeEEEEEEEEEe-cCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhH---HHHhHh
Q 000839 913 FYTAILERGDEIISAASIRFH-GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAEL---MHTWTR 988 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~-G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea---~~~Wt~ 988 (1260)
.+.++++.+++|||++++.+. +...+||--|+|.|+|||||+|+.||..+++.++..|+..+++.+.... ..++.
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~- 236 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA- 236 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH-
Confidence 344556789999999998653 3367999999999999999999999999999999999999999887664 45666
Q ss_pred ccCceeccH
Q 000839 989 VFGFTSLEE 997 (1260)
Q Consensus 989 kFGF~~v~~ 997 (1260)
++||+....
T Consensus 237 k~GF~~~G~ 245 (266)
T TIGR03827 237 RLGYAYGGT 245 (266)
T ss_pred HcCCccccE
Confidence 899997643
No 25
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.28 E-value=2.7e-06 Score=99.31 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=69.9
Q ss_pred EEeeCCeEEEEEEEEEec-CceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceec
Q 000839 917 ILERGDEIISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1260)
Q Consensus 917 VLe~~~eVVsaAslRV~G-~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v 995 (1260)
|++.++++||++.+..+. ...+||-.|+|.|+|||||+|+.||+++++.+++.|+..|++-+. .+..+|. ++||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEEC
Confidence 457899999999998774 468999999999999999999999999999999999999887654 4678887 8999999
Q ss_pred cH
Q 000839 996 EE 997 (1260)
Q Consensus 996 ~~ 997 (1260)
..
T Consensus 404 g~ 405 (429)
T TIGR01890 404 SV 405 (429)
T ss_pred Ch
Confidence 75
No 26
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.25 E-value=4.7e-06 Score=86.47 Aligned_cols=80 Identities=8% Similarity=0.033 Sum_probs=69.4
Q ss_pred EEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhHhccCc
Q 000839 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTRVFGF 992 (1260)
Q Consensus 916 ~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~Wt~kFGF 992 (1260)
++++.++++||.+.++.+....++|=.+++.++|||||+|+.|+.++++.+..+|+.+|++... +.++.+|. |+||
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF 180 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGA 180 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCC
Confidence 3456789999999998776667899999999999999999999999999999999999998754 45788998 8999
Q ss_pred eecc
Q 000839 993 TSLE 996 (1260)
Q Consensus 993 ~~v~ 996 (1260)
+...
T Consensus 181 ~~~~ 184 (191)
T TIGR02382 181 NIES 184 (191)
T ss_pred cccc
Confidence 8654
No 27
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.23 E-value=4.2e-06 Score=95.60 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=73.0
Q ss_pred cccEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhcc
Q 000839 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVF 990 (1260)
Q Consensus 911 rGFYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kF 990 (1260)
.-.|++++..+++||++|++ .|. .|.-|||.++|||+|+|+.||.++++.+...|+..++|-+.+....++. ++
T Consensus 29 ~~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-kl 102 (332)
T TIGR00124 29 PLEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YC 102 (332)
T ss_pred CCCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-Hc
Confidence 33567778899999999997 452 4889999999999999999999999999999999999999999988887 89
Q ss_pred CceeccHH
Q 000839 991 GFTSLEES 998 (1260)
Q Consensus 991 GF~~v~~~ 998 (1260)
||..+...
T Consensus 103 GF~~i~~~ 110 (332)
T TIGR00124 103 GFKTLAEA 110 (332)
T ss_pred CCEEeeee
Confidence 99998863
No 28
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.22 E-value=4.8e-06 Score=97.44 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=69.8
Q ss_pred EEEeeCCeEEEEEEEEEec-CceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCcee
Q 000839 916 AILERGDEIISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1260)
Q Consensus 916 ~VLe~~~eVVsaAslRV~G-~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1260)
++++.++++||++.+..+. ...++|-.|+|.|+|||||+|+.||.++++.++..|+..+++-+ ..+..+|. +|||..
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEE
Confidence 3557899999999887554 36799999999999999999999999999999999999998765 45788997 899999
Q ss_pred ccH
Q 000839 995 LEE 997 (1260)
Q Consensus 995 v~~ 997 (1260)
+..
T Consensus 415 ~g~ 417 (441)
T PRK05279 415 VDV 417 (441)
T ss_pred CCh
Confidence 975
No 29
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.21 E-value=5.2e-07 Score=104.94 Aligned_cols=56 Identities=43% Similarity=1.001 Sum_probs=47.5
Q ss_pred CCCCcccccccCCC-----CceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc--------ccccCCCCC
Q 000839 715 DPNDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT--------CKFCGLAGE 770 (1260)
Q Consensus 715 d~ndD~C~VCgdgG-----dLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~--------C~~CG~~~~ 770 (1260)
+.-|+.|.+|.... -+++||+|.-+.|+.|.+++.+|+|.|+|..|. |.+|-...+
T Consensus 190 d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dG 258 (669)
T COG5141 190 DEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDG 258 (669)
T ss_pred hhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCC
Confidence 44578899997533 499999999999999999999999999999996 888865544
No 30
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.20 E-value=2.6e-07 Score=101.49 Aligned_cols=79 Identities=28% Similarity=0.709 Sum_probs=57.0
Q ss_pred CCcccCCCCceeeccceeeccCCcc-cCCceeeeccCCcchhhhhHhhhcccccccccCCcccCCCCCCCCCcccccccC
Q 000839 648 DGIHCGCCSKILTVSKFEIHAGSKL-RQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGD 726 (1260)
Q Consensus 648 dGI~C~CC~kvfSpSeFEaHAGsk~-rqPy~nIyLedG~SLleCqieawnkq~~sEk~G~~~V~~dgdd~ndD~C~VCgd 726 (1260)
+-|.|+-|...=|||++.--|.|-. -+.| .|.+.+| ..|.+||.
T Consensus 245 elvscsdcgrsghpsclqft~nm~~avk~y-------rwqciec----------------------------k~csicgt 289 (336)
T KOG1244|consen 245 ELVSCSDCGRSGHPSCLQFTANMIAAVKTY-------RWQCIEC----------------------------KYCSICGT 289 (336)
T ss_pred hhcchhhcCCCCCcchhhhhHHHHHHHHhh-------eeeeeec----------------------------ceeccccC
Confidence 4579999999999987654444421 1111 1222233 47899986
Q ss_pred CC---CceeeCCCCCccCCCcCCCCC--CCCCCCCCCCcc
Q 000839 727 GG---DLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT 761 (1260)
Q Consensus 727 gG---dLLcCD~CpraFH~~CL~~~~--vPeGdW~Cp~C~ 761 (1260)
.. +||+||.|++.||++||.|++ .|+|.|.|..|.
T Consensus 290 senddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 290 SENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred cCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 54 599999999999999999986 588999998774
No 31
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.18 E-value=5.1e-06 Score=101.28 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=70.6
Q ss_pred EEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceec
Q 000839 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1260)
Q Consensus 916 ~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v 995 (1260)
+|++.+++|||++.+.+.....++|-.|+|.|+|||||+|+.||+.+++.++..|+..|++-.. +..||. ||||+.+
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEEC
Confidence 4567899999999998877678999999999999999999999999999999999999987653 468888 8999988
Q ss_pred cH
Q 000839 996 EE 997 (1260)
Q Consensus 996 ~~ 997 (1260)
..
T Consensus 583 ~~ 584 (614)
T PRK12308 583 SK 584 (614)
T ss_pred Cc
Confidence 85
No 32
>PHA00673 acetyltransferase domain containing protein
Probab=98.15 E-value=1.1e-05 Score=83.48 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=73.2
Q ss_pred cEEEEEeeCCeEEEEEEEEEec------CceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhh--HHH
Q 000839 913 FYTAILERGDEIISAASIRFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE--LMH 984 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G------~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e--a~~ 984 (1260)
-..+|.+.+|+|||++.+.+.. ...+.|=.|-|.+.+||||+|+.||..+++.++..|...|.|.|+|+ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 3455667899999999887654 36778999999999999999999999999999999999999999987 889
Q ss_pred HhHhccCceeccH
Q 000839 985 TWTRVFGFTSLEE 997 (1260)
Q Consensus 985 ~Wt~kFGF~~v~~ 997 (1260)
||. +.|++....
T Consensus 135 fy~-~~g~~~~~~ 146 (154)
T PHA00673 135 LLP-AAGYRETNR 146 (154)
T ss_pred HHH-hCCchhhch
Confidence 999 788876543
No 33
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.13 E-value=8.3e-07 Score=106.50 Aligned_cols=89 Identities=28% Similarity=0.821 Sum_probs=68.5
Q ss_pred CCcccccccCCC-----CceeeCCCCCccCCCcCCCCC---CCCCCCCCCCcc-ccccCCCCCCCCCCCCCCCCceeeCC
Q 000839 717 NDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQM---LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCA 787 (1260)
Q Consensus 717 ndD~C~VCgdgG-----dLLcCD~CpraFH~~CL~~~~---vPeGdW~Cp~C~-C~~CG~~~~ds~eed~~S~~~LL~Cd 787 (1260)
....|.+|+..| .|+.|..|...||.+|+.... +-.+-|.|+.|+ |..|+..+.. ..+++|.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~---------~kf~~Ck 87 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDP---------KKFLLCK 87 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCc---------ccccccc
Confidence 346788887644 599999999999999998532 223449999998 8889854432 3589999
Q ss_pred cchhhhcccchhcccccccccCCCcceeeCC
Q 000839 788 MCEKKYHKLCMQEMDALSDNLTGLVTSFCGR 818 (1260)
Q Consensus 788 QCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk 818 (1260)
.|+-.||..|+.+ +......++|+|.+
T Consensus 88 ~cDvsyh~yc~~P----~~~~v~sg~~~ckk 114 (694)
T KOG4443|consen 88 RCDVSYHCYCQKP----PNDKVPSGPWLCKK 114 (694)
T ss_pred cccccccccccCC----ccccccCcccccHH
Confidence 9999999999985 34445678999954
No 34
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.06 E-value=2.3e-05 Score=76.85 Aligned_cols=86 Identities=13% Similarity=0.281 Sum_probs=68.2
Q ss_pred cEEEEEeeCCeEEEEEEEEEec----CceeEeeeeeeecccccCChhHHHHHHHHHHHhh-cCccEEEecch---hhHHH
Q 000839 913 FYTAILERGDEIISAASIRFHG----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAI---AELMH 984 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G----~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA~---~ea~~ 984 (1260)
.+.+|.+.++++||.+.+.... ...+|+- +++.++|||||+|+.|++.++..+.. +|+.++++... ..+..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4556667889999999987532 2456654 89999999999999999999999888 79888776654 56778
Q ss_pred HhHhccCceeccHHHH
Q 000839 985 TWTRVFGFTSLEESLK 1000 (1260)
Q Consensus 985 ~Wt~kFGF~~v~~~~k 1000 (1260)
++. ++||+......+
T Consensus 130 ~y~-k~GF~~~g~~~~ 144 (162)
T PRK10140 130 VYK-KYGFEIEGTGKK 144 (162)
T ss_pred HHH-HCCCEEEeeccc
Confidence 887 899998766433
No 35
>PRK09831 putative acyltransferase; Provisional
Probab=98.04 E-value=1.3e-05 Score=79.34 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=60.4
Q ss_pred EEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceec
Q 000839 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1260)
Q Consensus 916 ~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v 995 (1260)
+|+..+|++||.+.+.. +.+..++|.|+|||||+|+.||.++++.+.. |.+.+...++.+|. ++||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEEe
Confidence 45578999999988732 4577899999999999999999999998776 45566778899999 8999998
Q ss_pred cHH
Q 000839 996 EES 998 (1260)
Q Consensus 996 ~~~ 998 (1260)
...
T Consensus 125 g~~ 127 (147)
T PRK09831 125 KQQ 127 (147)
T ss_pred ecc
Confidence 774
No 36
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.03 E-value=1.5e-06 Score=96.06 Aligned_cols=74 Identities=26% Similarity=0.534 Sum_probs=58.6
Q ss_pred CCcccCCCCceeeccceeec---cCCcccCCceeeeccCCcchhhhhHhhhcccccccccCCcccCCCCCCCCCcccccc
Q 000839 648 DGIHCGCCSKILTVSKFEIH---AGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGIC 724 (1260)
Q Consensus 648 dGI~C~CC~kvfSpSeFEaH---AGsk~rqPy~nIyLedG~SLleCqieawnkq~~sEk~G~~~V~~dgdd~ndD~C~VC 724 (1260)
..|+|.-|....||++.+.. ++.-...|| ++.+| ..|.+|
T Consensus 278 S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W---------~C~~C----------------------------~lC~IC 320 (381)
T KOG1512|consen 278 SWIVCKPCATRPHPYCVAMIPELVGQYKTYFW---------KCSSC----------------------------ELCRIC 320 (381)
T ss_pred cceeecccccCCCCcchhcCHHHHhHHhhcch---------hhccc----------------------------Hhhhcc
Confidence 57899999999999998654 333223333 33333 479999
Q ss_pred cCCC---CceeeCCCCCccCCCcCCCCCCCCCCCCCC
Q 000839 725 GDGG---DLICCDGCPSTFHQSCLDIQMLPPGDWHCP 758 (1260)
Q Consensus 725 gdgG---dLLcCD~CpraFH~~CL~~~~vPeGdW~Cp 758 (1260)
+.+. ++++||.|++.||.+|+++..+|.|.|.|.
T Consensus 321 ~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 321 LGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred CCcccchheeccccccCCCCccccccccccCccchhh
Confidence 8754 699999999999999999999999999996
No 37
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.01 E-value=2.2e-05 Score=85.58 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=68.7
Q ss_pred cccEEEEEeeCCeEEEEEEEEEecC--ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch---hhHHHH
Q 000839 911 SGFYTAILERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHT 985 (1260)
Q Consensus 911 rGFYt~VLe~~~eVVsaAslRV~G~--~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ea~~~ 985 (1260)
.++|.++...++++||.+.+.+... .+++|-.++|.++|||||+|+.|+..+++.++..|+..+++... ..++.+
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 3455543223689999887776543 46788889999999999999999999999999999998887654 468899
Q ss_pred hHhccCceeccH
Q 000839 986 WTRVFGFTSLEE 997 (1260)
Q Consensus 986 Wt~kFGF~~v~~ 997 (1260)
|. ++||+.+..
T Consensus 278 y~-k~GF~~~~~ 288 (292)
T TIGR03448 278 YE-KLGFTVAEV 288 (292)
T ss_pred HH-HcCCEEccc
Confidence 98 899998654
No 38
>PRK13688 hypothetical protein; Provisional
Probab=97.98 E-value=2.9e-05 Score=79.98 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=58.7
Q ss_pred EeeCCeEEEEEEEEEec----------CceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhH
Q 000839 918 LERGDEIISAASIRFHG----------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1260)
Q Consensus 918 Le~~~eVVsaAslRV~G----------~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt 987 (1260)
+..++++|+++.+.... .+.++|--|||.++|||||+|++||..+++. ++. +.+.+...+..+|.
T Consensus 50 ~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY~ 124 (156)
T PRK13688 50 IYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFWL 124 (156)
T ss_pred EEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHHH
Confidence 35689999988875422 3668999999999999999999999876543 443 34456677899999
Q ss_pred hccCceeccHH
Q 000839 988 RVFGFTSLEES 998 (1260)
Q Consensus 988 ~kFGF~~v~~~ 998 (1260)
|+||..+...
T Consensus 125 -k~GF~~~~~~ 134 (156)
T PRK13688 125 -KLGFTPVEYK 134 (156)
T ss_pred -hCCCEEeEEe
Confidence 8999988754
No 39
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.94 E-value=4.6e-05 Score=77.24 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=64.8
Q ss_pred EEEEEe-eCCeEEEEEEEEE--ecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecc---hhhHHHHhH
Q 000839 914 YTAILE-RGDEIISAASIRF--HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPA---IAELMHTWT 987 (1260)
Q Consensus 914 Yt~VLe-~~~eVVsaAslRV--~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA---~~ea~~~Wt 987 (1260)
+++|.+ .++++||.+.+.. ...+.+.+-.|||.++|||||+|+.|+..+++.++..++.+|.+-. -..+..+|.
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 445556 5779999886533 2335688889999999999999999999999999998988887654 345777887
Q ss_pred hccCceecc
Q 000839 988 RVFGFTSLE 996 (1260)
Q Consensus 988 ~kFGF~~v~ 996 (1260)
||||+...
T Consensus 120 -k~G~~~~~ 127 (157)
T TIGR02406 120 -ALARRRGV 127 (157)
T ss_pred -HhCcccCC
Confidence 89987643
No 40
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.91 E-value=9.4e-05 Score=72.63 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=62.5
Q ss_pred eCCeEEEEEEEEEecC--ceeEeeeeeeecccccCChhHHHHHHHHHHH-hhcCccEEEecch---hhHHHHhHhccCce
Q 000839 920 RGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAI---AELMHTWTRVFGFT 993 (1260)
Q Consensus 920 ~~~eVVsaAslRV~G~--~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L-~~LgVe~LvlpA~---~ea~~~Wt~kFGF~ 993 (1260)
.+|++||.+.++-... ..|++-+ -+.++||++|+|+.|+..|++.+ ..+|+++|.+... ..++.+|+ ++||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~-~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~-~~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSI-YVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYK-KLGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEE-EEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHH-HTTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEee-EEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHH-hCCCE
Confidence 5999999999985443 5777774 44499999999999999999999 9999999986554 45889999 89999
Q ss_pred eccH
Q 000839 994 SLEE 997 (1260)
Q Consensus 994 ~v~~ 997 (1260)
....
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 41
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.91 E-value=4.8e-06 Score=100.84 Aligned_cols=56 Identities=32% Similarity=0.901 Sum_probs=48.9
Q ss_pred CCCCcccccccCC-----CCceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc------ccccCCCCC
Q 000839 715 DPNDDTCGICGDG-----GDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT------CKFCGLAGE 770 (1260)
Q Consensus 715 d~ndD~C~VCgdg-----GdLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~------C~~CG~~~~ 770 (1260)
.+++..|-+|..+ .+|++||.|....|+.|+++..+|+|.|.|..|. |.+|...++
T Consensus 268 ~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGG 334 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGG 334 (893)
T ss_pred ccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCC
Confidence 3477899999754 4699999999999999999999999999999997 888876655
No 42
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.90 E-value=3.1e-05 Score=77.22 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=63.7
Q ss_pred eEEEEEEEE-EecCc----eeEeeeeeeecccccCChhHHHHHHHHHHHhhcCc-cEEEecchhh---HHHHhHhccCce
Q 000839 923 EIISAASIR-FHGTQ----LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKV-EKLIIPAIAE---LMHTWTRVFGFT 993 (1260)
Q Consensus 923 eVVsaAslR-V~G~~----lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgV-e~LvlpA~~e---a~~~Wt~kFGF~ 993 (1260)
+++|....+ +.|.. .++|-.|||.|+|||||+|++|++.+++.+...+. +.++|-.+.+ |+.+|. ++||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 588888885 44432 78999999999999999999999999999999986 8888877754 778888 79999
Q ss_pred eccHHH
Q 000839 994 SLEESL 999 (1260)
Q Consensus 994 ~v~~~~ 999 (1260)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987644
No 43
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.89 E-value=5.8e-05 Score=60.49 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=54.3
Q ss_pred EEeeCCeEEEEEEEEEec--CceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEe
Q 000839 917 ILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII 976 (1260)
Q Consensus 917 VLe~~~eVVsaAslRV~G--~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvl 976 (1260)
++..++++||.+.+.... ...++|-.++|.++|||+|+++.|+..+.+.+...|..++++
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 456789999999998766 478999999999999999999999999999999999999885
No 44
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.85 E-value=9.7e-06 Score=102.93 Aligned_cols=56 Identities=39% Similarity=1.018 Sum_probs=48.1
Q ss_pred CCCcccccccCCC-----CceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc--------ccccCCCCCC
Q 000839 716 PNDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT--------CKFCGLAGED 771 (1260)
Q Consensus 716 ~ndD~C~VCgdgG-----dLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~--------C~~CG~~~~d 771 (1260)
..|..|.||.++. ..++||.|..++|++|++.+.+|+|.|+|..|. |.+|-..++.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gA 285 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGA 285 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCc
Confidence 4577999998754 489999999999999999999999999999996 8888655543
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.84 E-value=7.2e-05 Score=81.56 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=64.2
Q ss_pred EEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch-hhHHHHhHhccCc
Q 000839 914 YTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-AELMHTWTRVFGF 992 (1260)
Q Consensus 914 Yt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~-~ea~~~Wt~kFGF 992 (1260)
+.+|...+++|||.+.+.......+++-.|+|.|+|||||+|+.||..+++.+. +.-.|++... ..+..++. ++||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCCC
Confidence 344556789999999998875555788889999999999999999999999865 3335555543 56788888 8999
Q ss_pred eeccH
Q 000839 993 TSLEE 997 (1260)
Q Consensus 993 ~~v~~ 997 (1260)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 88764
No 46
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.83 E-value=6.7e-05 Score=90.81 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=67.8
Q ss_pred ccEEEEEee--CCeEEEEEEEEEe------cCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch---h
Q 000839 912 GFYTAILER--GDEIISAASIRFH------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---A 980 (1260)
Q Consensus 912 GFYt~VLe~--~~eVVsaAslRV~------G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~---~ 980 (1260)
+++.+|.+. +|+|||.+....+ +...++|--|+|.++|||||+|+.||.++++.++..|+.+++|... .
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 344455553 6999999875322 2234788899999999999999999999999999999999876543 6
Q ss_pred hHHHHhHhccCceeccH
Q 000839 981 ELMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 981 ea~~~Wt~kFGF~~v~~ 997 (1260)
.+..+|. ++||..++.
T Consensus 202 ~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYE-KLGFRRIPV 217 (547)
T ss_pred HHHHHHH-HCCCEEeeE
Confidence 6889998 899998864
No 47
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.82 E-value=5.3e-06 Score=69.71 Aligned_cols=42 Identities=48% Similarity=1.270 Sum_probs=35.1
Q ss_pred ccccccC---CCCceeeCCCCCccCCCcCCCCC----CCCCCCCCCCcc
Q 000839 720 TCGICGD---GGDLICCDGCPSTFHQSCLDIQM----LPPGDWHCPNCT 761 (1260)
Q Consensus 720 ~C~VCgd---gGdLLcCD~CpraFH~~CL~~~~----vPeGdW~Cp~C~ 761 (1260)
+|.+|+. .+++|.|+.|...||..|++++. .+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4788876 56799999999999999999863 344689999885
No 48
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.75 E-value=9.2e-06 Score=98.66 Aligned_cols=44 Identities=36% Similarity=0.966 Sum_probs=38.1
Q ss_pred CcccccccCCC---CceeeCCCCCc-cCCCcCCCCC--CCCCCCCCCCcc
Q 000839 718 DDTCGICGDGG---DLICCDGCPST-FHQSCLDIQM--LPPGDWHCPNCT 761 (1260)
Q Consensus 718 dD~C~VCgdgG---dLLcCD~Cpra-FH~~CL~~~~--vPeGdW~Cp~C~ 761 (1260)
..-|.+|.... -||+||.|..+ ||.+||+|+. +|.++|||+.|.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 45799998543 39999999999 9999999975 899999999996
No 50
>PRK01346 hypothetical protein; Provisional
Probab=97.72 E-value=0.00012 Score=84.45 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=67.5
Q ss_pred EEEEeeCCeEEEEEEEEEe------cC--ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHh
Q 000839 915 TAILERGDEIISAASIRFH------GT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTW 986 (1260)
Q Consensus 915 t~VLe~~~eVVsaAslRV~------G~--~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~W 986 (1260)
+++...+++|||.+.+..+ |. ..+.|-.|||.|+|||||+|+.||..+++.++..|+..++|-+.. ..+|
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 3455788999999887532 32 578999999999999999999999999999999999988887665 3678
Q ss_pred HhccCceeccHH
Q 000839 987 TRVFGFTSLEES 998 (1260)
Q Consensus 987 t~kFGF~~v~~~ 998 (1260)
. +|||......
T Consensus 127 ~-r~Gf~~~~~~ 137 (411)
T PRK01346 127 G-RFGYGPATYS 137 (411)
T ss_pred h-hCCCeeccce
Confidence 7 8999988763
No 51
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.71 E-value=0.00016 Score=75.49 Aligned_cols=92 Identities=13% Similarity=0.232 Sum_probs=71.9
Q ss_pred cEEEEEeeCCeEEEEEEEEEecC---ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchh---hHHHHh
Q 000839 913 FYTAILERGDEIISAASIRFHGT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA---ELMHTW 986 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~---~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~---ea~~~W 986 (1260)
|..+.++.++..|||+.....-. .-++|-.+||.++|||||||++|+..+.+.++..|...+||..-. .|+..|
T Consensus 57 ~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY 136 (165)
T KOG3139|consen 57 FCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLY 136 (165)
T ss_pred EEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHH
Confidence 45554444443577776654333 348999999999999999999999999999999999999998875 477777
Q ss_pred HhccCceeccHHHHHhhhc
Q 000839 987 TRVFGFTSLEESLKQEMRS 1005 (1260)
Q Consensus 987 t~kFGF~~v~~~~k~~l~~ 1005 (1260)
. +|||...-...+..+..
T Consensus 137 ~-sLGF~r~~r~~~YYlng 154 (165)
T KOG3139|consen 137 E-SLGFKRDKRLFRYYLNG 154 (165)
T ss_pred H-hcCceEecceeEEEECC
Confidence 7 89999987666555543
No 52
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.64 E-value=3.2e-05 Score=91.27 Aligned_cols=99 Identities=19% Similarity=0.375 Sum_probs=69.6
Q ss_pred CcccccccC-----CCCceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc-------------------------------
Q 000839 718 DDTCGICGD-----GGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT------------------------------- 761 (1260)
Q Consensus 718 dD~C~VCgd-----gGdLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~------------------------------- 761 (1260)
...|.+|.. +.++..|+.|.++||+.|.-+...-.+.|.|..|.
T Consensus 83 e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD 162 (464)
T KOG4323|consen 83 ELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWD 162 (464)
T ss_pred ccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccC
Confidence 345777764 34688999999999999997765556778888765
Q ss_pred --------ccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhcccccccccCCCcceeeCCcchhH
Q 000839 762 --------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1260)
Q Consensus 762 --------C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~CkeI 823 (1260)
|..|+.-.. ...+.|++|+.|..+||..|.++.....+...+...|||..+|...
T Consensus 163 ~~~~~n~qc~vC~~g~~-------~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 163 SGHKVNLQCSVCYCGGP-------GAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ccccccceeeeeecCCc-------CccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 333322111 1124699999999999999999865444444577889997555443
No 53
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.62 E-value=2e-05 Score=87.92 Aligned_cols=42 Identities=38% Similarity=1.009 Sum_probs=37.4
Q ss_pred cccccccCCCCceeeCC--CC-CccCCCcCCCCCCCCCCCCCCCcc
Q 000839 719 DTCGICGDGGDLICCDG--CP-STFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 719 D~C~VCgdgGdLLcCD~--Cp-raFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
.+|- |...|+|+-||. |+ .+||..|+++...|.|.|||+.|.
T Consensus 222 C~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 222 CICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCK 266 (274)
T ss_pred EEec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhh
Confidence 3454 567899999998 99 999999999999999999999886
No 54
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.62 E-value=0.00016 Score=73.95 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=88.9
Q ss_pred ccccchhhhhhhhhhcccccccccCCCCCchhhHHHhhcCCCCCcccccccEEEEEe--eCCeEEEEEEEEE-----ecC
Q 000839 863 RVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILE--RGDEIISAASIRF-----HGT 935 (1260)
Q Consensus 863 ~vEcnSKLAvALtIm~ECFdPIiD~rSGrDLIpdmVYn~GSnFkRLnfrGFYt~VLe--~~~eVVsaAslRV-----~G~ 935 (1260)
.+|+-..|...-.|-+|.|..-++ .|- ..+ ..+|.+|+| ..++||++|+|-| ||-
T Consensus 21 f~elL~qLT~vG~vt~e~F~krf~---------~mk-~~~--------~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~ 82 (150)
T KOG3396|consen 21 FIELLKQLTSVGVVTREQFEKRFE---------AMK-KSG--------DWYYIVVIEDKESEKVIGTATLFIERKFIHGC 82 (150)
T ss_pred HHHHHHHHhhccccCHHHHHHHHH---------HHH-hcC--------CcEEEEEEEeCCcCeEEEEEEEEEehhhhhcc
Confidence 456666677767777777774433 121 111 116888888 4579999999965 332
Q ss_pred -ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceecc
Q 000839 936 -QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1260)
Q Consensus 936 -~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v~ 996 (1260)
.-..|-=|+|.++||||++|+.|+..+-.+.++||+=++.|.-.++.++||. ||||+.-.
T Consensus 83 g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYe-KcG~s~~~ 143 (150)
T KOG3396|consen 83 GSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYE-KCGYSNAG 143 (150)
T ss_pred cccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHH-HcCccccc
Confidence 2245666899999999999999999999999999999999999999999999 89998765
No 55
>PHA01807 hypothetical protein
Probab=97.62 E-value=0.00015 Score=74.82 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=58.6
Q ss_pred cEEEEEeeCCeEEEEEEEEEecC----ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhh---HHHH
Q 000839 913 FYTAILERGDEIISAASIRFHGT----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHT 985 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~----~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e---a~~~ 985 (1260)
.+.++++.+++|||.+++..... .+.+|--|.|.|+|||+|+|+.||+++++.++..|+..|++-...+ |+.+
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 34456678999999999864432 2333344689999999999999999999999999999998877765 4555
Q ss_pred hH
Q 000839 986 WT 987 (1260)
Q Consensus 986 Wt 987 (1260)
|.
T Consensus 133 y~ 134 (153)
T PHA01807 133 YR 134 (153)
T ss_pred HH
Confidence 55
No 56
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.62 E-value=0.00019 Score=80.90 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=69.0
Q ss_pred ccEEEEEee---CCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch-----hhHH
Q 000839 912 GFYTAILER---GDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-----AELM 983 (1260)
Q Consensus 912 GFYt~VLe~---~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~-----~ea~ 983 (1260)
..|++.+.. ++.|||++.++..+ ..++|-.|++++.|||+|+|+.||.++++.++..|+..|++... ..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555543 67899999988654 56899999999999999999999999999999999999998654 4688
Q ss_pred HHhHhccCceec
Q 000839 984 HTWTRVFGFTSL 995 (1260)
Q Consensus 984 ~~Wt~kFGF~~v 995 (1260)
.+|. ++||...
T Consensus 309 ~fY~-~~GF~~~ 319 (320)
T TIGR01686 309 SFYE-QIGFEDE 319 (320)
T ss_pred HHHH-HcCCccC
Confidence 9998 8999854
No 57
>PRK10562 putative acetyltransferase; Provisional
Probab=97.61 E-value=0.00021 Score=70.39 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=57.9
Q ss_pred EEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCcee
Q 000839 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1260)
Q Consensus 915 t~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1260)
.+|+..++++||.+.+... ..+-.++|.++|||||+|+.||..+++.+..+.+ .+...-+.+..+|. |+||+.
T Consensus 50 ~~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~-k~Gf~~ 122 (145)
T PRK10562 50 TWVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYH-AQGFRI 122 (145)
T ss_pred EEEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHH-HCCCEE
Confidence 3345677899999887432 4567799999999999999999999997654322 23344567888998 899999
Q ss_pred ccH
Q 000839 995 LEE 997 (1260)
Q Consensus 995 v~~ 997 (1260)
+..
T Consensus 123 ~~~ 125 (145)
T PRK10562 123 VDS 125 (145)
T ss_pred ccc
Confidence 874
No 58
>PRK10514 putative acetyltransferase; Provisional
Probab=97.58 E-value=0.00027 Score=68.84 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=57.2
Q ss_pred EEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceecc
Q 000839 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1260)
Q Consensus 917 VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v~ 996 (1260)
+++.++++||.+.+.- .++-.++|.++|||||+|++|++.+++.+.. +...+.+.-..+..+|. |+||+...
T Consensus 54 ~~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~ 125 (145)
T PRK10514 54 AVDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTG 125 (145)
T ss_pred EEecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEec
Confidence 3356889999887742 3455799999999999999999999997643 44445555577899998 99999976
Q ss_pred H
Q 000839 997 E 997 (1260)
Q Consensus 997 ~ 997 (1260)
.
T Consensus 126 ~ 126 (145)
T PRK10514 126 R 126 (145)
T ss_pred c
Confidence 5
No 59
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.54 E-value=0.00048 Score=70.47 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=66.0
Q ss_pred EEEEEeeCCeEEEEEEEEEec--CceeEeeeeeeecccccCChhHHHHHHHHHHHh-hcCccEEEecch---hhHHHHhH
Q 000839 914 YTAILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAI---AELMHTWT 987 (1260)
Q Consensus 914 Yt~VLe~~~eVVsaAslRV~G--~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~-~LgVe~LvlpA~---~ea~~~Wt 987 (1260)
+.++++.++++||.+.+.... ...+++- +++.++|||+|+|+.|+..+.+.+. .+|+.+|++-+. ..++.++.
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 344557899999999886543 2467774 8999999999999999999998765 699999988654 35778888
Q ss_pred hccCceeccH
Q 000839 988 RVFGFTSLEE 997 (1260)
Q Consensus 988 ~kFGF~~v~~ 997 (1260)
++||+.+..
T Consensus 137 -k~GF~~~~~ 145 (186)
T PRK15130 137 -KLGFEVEGE 145 (186)
T ss_pred -HCCCEEEEE
Confidence 899998865
No 60
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.51 E-value=6.5e-05 Score=90.59 Aligned_cols=44 Identities=41% Similarity=1.151 Sum_probs=37.6
Q ss_pred CcccccccCCCCceeeCCCCCccCCCcCCCCC---CCCCCCCCCCcc
Q 000839 718 DDTCGICGDGGDLICCDGCPSTFHQSCLDIQM---LPPGDWHCPNCT 761 (1260)
Q Consensus 718 dD~C~VCgdgGdLLcCD~CpraFH~~CL~~~~---vPeGdW~Cp~C~ 761 (1260)
-..|.+|..+|+++||+.|+.+||..|.+++. .+.+.|-|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 46899999999999999999999999999753 444678888875
No 61
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.49 E-value=0.00049 Score=64.28 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=56.0
Q ss_pred CCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEE-ecch-hhHHHHhHhccCceeccH
Q 000839 921 GDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI-IPAI-AELMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 921 ~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lv-lpA~-~ea~~~Wt~kFGF~~v~~ 997 (1260)
+++.+..++-.+.... ++|-.|.|.|+|||+|+|+.|+.++.+.+..-|..-++ +... ..+..+++ |+||+.+..
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEEE
Confidence 3455566666565555 99999999999999999999999999998888876543 3333 35778888 899998753
No 62
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.48 E-value=2.6e-05 Score=95.99 Aligned_cols=50 Identities=48% Similarity=1.268 Sum_probs=42.9
Q ss_pred CCCCCcccccccCCCCceeeCCCCCccCCCcCCCCC--CCCCCCCCCCcccc
Q 000839 714 DDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCTCK 763 (1260)
Q Consensus 714 dd~ndD~C~VCgdgGdLLcCD~CpraFH~~CL~~~~--vPeGdW~Cp~C~C~ 763 (1260)
++.+...|.+|+++|++||||.|+.+||.+|++++. .|.++|.|+.|.|.
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 345677999999999999999999999999999874 56688999977543
No 63
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.45 E-value=0.001 Score=65.81 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=67.2
Q ss_pred ccccEEEEEeeCCeEEEEEEEEE------ecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhc-CccEEEecchhh-
Q 000839 910 YSGFYTAILERGDEIISAASIRF------HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAE- 981 (1260)
Q Consensus 910 frGFYt~VLe~~~eVVsaAslRV------~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~L-gVe~LvlpA~~e- 981 (1260)
-.+++.+|...+|++||.+.+.- .....+.+-.+++.++|||||+|+.++.++.+.+..- ++++|++...++
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N 124 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDN 124 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCC
Confidence 45677888899999999887742 1335677889999999999999999999999887765 899999988775
Q ss_pred --HHHHhHhccCceeccH
Q 000839 982 --LMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 982 --a~~~Wt~kFGF~~v~~ 997 (1260)
++.+++ |+||+.+..
T Consensus 125 ~~~~~~~~-k~GF~~~g~ 141 (152)
T PF13523_consen 125 TRAIRLYE-KAGFRKVGE 141 (152)
T ss_dssp HHHHHHHH-HTT-EEEEE
T ss_pred HHHHHHHH-HcCCEEeeE
Confidence 555555 999998764
No 64
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.44 E-value=0.00095 Score=64.04 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=57.4
Q ss_pred eCCeEEEEEEEEEe--cCceeEeeeeeeecccccCChhHHHHHHHHHHH-hhcCccEEEecchhhHH---HHhHhccCce
Q 000839 920 RGDEIISAASIRFH--GTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAIAELM---HTWTRVFGFT 993 (1260)
Q Consensus 920 ~~~eVVsaAslRV~--G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L-~~LgVe~LvlpA~~ea~---~~Wt~kFGF~ 993 (1260)
.++++||...++.. ....|||- +.+.++|||+|+|+.++..+...+ ..+|+.+|++...++-. .++ .|+||+
T Consensus 65 ~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~-~k~GF~ 142 (142)
T PF13302_consen 65 DDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLL-EKLGFE 142 (142)
T ss_dssp TTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHH-HHTT-E
T ss_pred cCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHH-HHcCCC
Confidence 34589999999543 45889999 679999999999999999999998 79999999987776533 333 488885
No 65
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.40 E-value=0.0011 Score=65.08 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=63.8
Q ss_pred EEEeeCCeEEEEEEEEEec--CceeEeeeeeeecccccCChhHHHHHHHHHHHh-hcCccEEEecch---hhHHHHhHhc
Q 000839 916 AILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAI---AELMHTWTRV 989 (1260)
Q Consensus 916 ~VLe~~~eVVsaAslRV~G--~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~-~LgVe~LvlpA~---~ea~~~Wt~k 989 (1260)
+++..+|++||.+.+.... ...+++-++ +.+.|| ||+|+.++.++++.+. .+++.+|++... ..++.++. +
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~-k 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE-K 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-H
Confidence 3446789999999997655 356777655 889999 9999999999999976 589999987544 45777777 8
Q ss_pred cCceeccHH
Q 000839 990 FGFTSLEES 998 (1260)
Q Consensus 990 FGF~~v~~~ 998 (1260)
+||+.+...
T Consensus 131 ~Gf~~~g~~ 139 (156)
T TIGR03585 131 FGFEREGVF 139 (156)
T ss_pred cCCeEeeee
Confidence 999987753
No 66
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.36 E-value=0.00016 Score=75.95 Aligned_cols=82 Identities=29% Similarity=0.754 Sum_probs=57.5
Q ss_pred ccccccC------CCCceeeCCCCCccCCCcCCCCC--------CCCCC--CCCCCcc---------------ccccCCC
Q 000839 720 TCGICGD------GGDLICCDGCPSTFHQSCLDIQM--------LPPGD--WHCPNCT---------------CKFCGLA 768 (1260)
Q Consensus 720 ~C~VCgd------gGdLLcCD~CpraFH~~CL~~~~--------vPeGd--W~Cp~C~---------------C~~CG~~ 768 (1260)
+|.+|+. -|.||+|-+|..+||..||++.. |-.+. -+|..|. |..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 4777853 35699999999999999999743 22233 5688886 8888766
Q ss_pred CCCCC---------C----------CCCC----------CCCceeeCCcchhhhcccchhcc
Q 000839 769 GEDDA---------E----------GDDT----------TTSALLPCAMCEKKYHKLCMQEM 801 (1260)
Q Consensus 769 ~~ds~---------e----------ed~~----------S~~~LL~CdQCeR~YHv~CL~~~ 801 (1260)
+.... + .|.. ..+.|+.|..|.++||...|++.
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCC
Confidence 54211 0 1111 12568999999999999999864
No 67
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.35 E-value=0.00056 Score=76.29 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=68.4
Q ss_pred cEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHH-HhhcCccEEEecch-hhHHHHhHhcc
Q 000839 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESA-LCSLKVEKLIIPAI-AELMHTWTRVF 990 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~-L~~LgVe~LvlpA~-~ea~~~Wt~kF 990 (1260)
+.++.++.+|+||+.|...-++...|+|-.|.|.|+|||+||..+||.++-.. |.+=...-|++.++ +.|-.+|. +.
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-ri 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RI 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-Hh
Confidence 34555567789999999999999999999999999999999999999998665 55555666777666 45667787 89
Q ss_pred Cceecc
Q 000839 991 GFTSLE 996 (1260)
Q Consensus 991 GF~~v~ 996 (1260)
||+.+.
T Consensus 256 GF~~~g 261 (268)
T COG3393 256 GFREIG 261 (268)
T ss_pred CCeecc
Confidence 999875
No 68
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.32 E-value=0.00052 Score=82.99 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=65.7
Q ss_pred eeCCeEEEEEEEEEecCcee-----------Eeeeeee--------ecccccCChhHHHHHHHHHHHhhcCccEEEecch
Q 000839 919 ERGDEIISAASIRFHGTQLA-----------EMPFIGT--------RHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI 979 (1260)
Q Consensus 919 e~~~eVVsaAslRV~G~~lA-----------EmPlvAT--------~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~ 979 (1260)
..++.+||-..||+...+.. ||-..++ .++|||||+|+.||+++|+.++..|++.|+|.+-
T Consensus 420 ~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~ 499 (522)
T TIGR01211 420 PKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISG 499 (522)
T ss_pred CCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeC
Confidence 35678999998888765322 5655554 5899999999999999999999999999999988
Q ss_pred hhHHHHhHhccCceeccH
Q 000839 980 AELMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 980 ~ea~~~Wt~kFGF~~v~~ 997 (1260)
..|..+|. ++||....+
T Consensus 500 ~~A~~FY~-klGf~~~g~ 516 (522)
T TIGR01211 500 IGVREYYR-KLGYELDGP 516 (522)
T ss_pred chHHHHHH-HCCCEEEcc
Confidence 89999999 899987654
No 69
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=97.30 E-value=0.00083 Score=69.47 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=68.1
Q ss_pred EEEEeeCCeEEEEEEEEEecCceeE--eeeeeeecccccCChhHHHHHHHHHHHhhcC-ccEEEecchhhHHHHhHhccC
Q 000839 915 TAILERGDEIISAASIRFHGTQLAE--MPFIGTRHIYRRQGMCRRLFCALESALCSLK-VEKLIIPAIAELMHTWTRVFG 991 (1260)
Q Consensus 915 t~VLe~~~eVVsaAslRV~G~~lAE--mPlvAT~~~yRrQGmgR~Lv~aIE~~L~~Lg-Ve~LvlpA~~ea~~~Wt~kFG 991 (1260)
-++.+.+|++|++|-|---+....+ |=-|+|.+++||+|+|+.||....+.+...- =+-++|.|-.-+..||. .||
T Consensus 52 l~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~~G 130 (155)
T COG2153 52 LLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-SFG 130 (155)
T ss_pred EEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-HhC
Confidence 4444559999998877655555555 6678999999999999999988877776665 56699999999999999 799
Q ss_pred ceeccHH
Q 000839 992 FTSLEES 998 (1260)
Q Consensus 992 F~~v~~~ 998 (1260)
|.++.+.
T Consensus 131 Fv~~~e~ 137 (155)
T COG2153 131 FVRVGEE 137 (155)
T ss_pred cEEcCch
Confidence 9999973
No 70
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.25 E-value=0.00013 Score=80.36 Aligned_cols=45 Identities=33% Similarity=1.009 Sum_probs=38.7
Q ss_pred CCCcccccccC--CCCceeeCC--CCC-ccCCCcCCCCCCCCCCCCCCCcc
Q 000839 716 PNDDTCGICGD--GGDLICCDG--CPS-TFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 716 ~ndD~C~VCgd--gGdLLcCD~--Cpr-aFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
....+| -|.. -|+|+-||+ |.+ +||..|+++...|.|.|||+.|+
T Consensus 219 ~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 219 GEELYC-FCQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred CceeEE-EecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 345677 5765 589999996 996 99999999999999999999996
No 71
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.22 E-value=0.0013 Score=67.78 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=63.8
Q ss_pred cEEEEEeeCCeEEEEEEEEEecC---ceeEeeeeeeecccccCChhHHHHHHHHHHHhh-cCccEEEecchhh---HHHH
Q 000839 913 FYTAILERGDEIISAASIRFHGT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAE---LMHT 985 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~---~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA~~e---a~~~ 985 (1260)
.|.+++..++++||.+.|..... ..|||= +.+.++|||||+|+.++.++.+.+.. +|+.+|++...+. +..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45555555789999999875532 345654 56899999999999999999999865 8999999888764 4455
Q ss_pred hHhccCceeccH
Q 000839 986 WTRVFGFTSLEE 997 (1260)
Q Consensus 986 Wt~kFGF~~v~~ 997 (1260)
+. |+||+....
T Consensus 156 ~e-k~Gf~~~g~ 166 (194)
T PRK10809 156 LA-RLGFEKEGY 166 (194)
T ss_pred HH-HCCCcEEee
Confidence 55 899997543
No 72
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.05 E-value=0.0034 Score=63.94 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=60.9
Q ss_pred eeCCeEEEEEEEEEecC--ceeEeeeeeeecccccCChhHHHHHHHHHHHh-hcCccEEEecchhh---HHHHhHhccCc
Q 000839 919 ERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAIAE---LMHTWTRVFGF 992 (1260)
Q Consensus 919 e~~~eVVsaAslRV~G~--~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~-~LgVe~LvlpA~~e---a~~~Wt~kFGF 992 (1260)
..++++||.+.++.... ..||+=. .+.++|||||+++.++.++.+.+. .+|+.+|++.+.+. +..++. |+||
T Consensus 73 ~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k~Gf 150 (179)
T PRK10151 73 FKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-RNGF 150 (179)
T ss_pred EECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-HCCC
Confidence 45899999999876432 5688854 689999999999999999988775 57899988765544 556665 8999
Q ss_pred eeccH
Q 000839 993 TSLEE 997 (1260)
Q Consensus 993 ~~v~~ 997 (1260)
+....
T Consensus 151 ~~~g~ 155 (179)
T PRK10151 151 TLEGC 155 (179)
T ss_pred EEEeE
Confidence 97654
No 73
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=96.93 E-value=0.0043 Score=67.02 Aligned_cols=98 Identities=21% Similarity=0.253 Sum_probs=64.1
Q ss_pred cccEEEEEeeCC--eEEEEEEEEEecC-------------------------------------ceeEeeeeeeeccccc
Q 000839 911 SGFYTAILERGD--EIISAASIRFHGT-------------------------------------QLAEMPFIGTRHIYRR 951 (1260)
Q Consensus 911 rGFYt~VLe~~~--eVVsaAslRV~G~-------------------------------------~lAEmPlvAT~~~yRr 951 (1260)
-++..+||...+ +||+|+-+-.-|. .-++|--|||.|++|+
T Consensus 25 P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~ 104 (196)
T PF13718_consen 25 PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQR 104 (196)
T ss_dssp TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-S
T ss_pred CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhc
Confidence 456677888888 9999997765543 2356777999999999
Q ss_pred CChhHHHHHHHHHHH-------------------------hhcCccEEEe--cchhhHHHHhHhccCceeccH-HHHHhh
Q 000839 952 QGMCRRLFCALESAL-------------------------CSLKVEKLII--PAIAELMHTWTRVFGFTSLEE-SLKQEM 1003 (1260)
Q Consensus 952 QGmgR~Lv~aIE~~L-------------------------~~LgVe~Lvl--pA~~ea~~~Wt~kFGF~~v~~-~~k~~l 1003 (1260)
+|||++|++.+++.+ +.-+|..|=. =+.++++.||+ |.||.+|-= ..+...
T Consensus 105 ~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~gf~pv~l~~~~n~~ 183 (196)
T PF13718_consen 105 MGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNGFVPVYLGQTRNEA 183 (196)
T ss_dssp SSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CTT-EEEEE-SS--TT
T ss_pred CCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCCcEEEEEecCcccc
Confidence 999999999999999 4667776543 36789999999 899999874 344444
Q ss_pred h-cccee
Q 000839 1004 R-SLNML 1009 (1260)
Q Consensus 1004 ~-~~~ll 1009 (1260)
. .|.++
T Consensus 184 SGe~S~i 190 (196)
T PF13718_consen 184 SGEHSAI 190 (196)
T ss_dssp T---EEE
T ss_pred cCceeee
Confidence 3 34443
No 74
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.89 E-value=0.0047 Score=65.38 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=78.8
Q ss_pred cccEEEEEeeC-CeEEEEEEEEEecC-----ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchh--hH
Q 000839 911 SGFYTAILERG-DEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA--EL 982 (1260)
Q Consensus 911 rGFYt~VLe~~-~eVVsaAslRV~G~-----~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~--ea 982 (1260)
.||+.+|++.+ |+|++-|++--|-. .++|. .|=+++.+||+|+|++|+.++...+..+||..++---.. .+
T Consensus 50 ~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~a 128 (169)
T COG1247 50 DGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLA 128 (169)
T ss_pred CCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcH
Confidence 56888888766 99999888876665 45554 456889999999999999999999999999887633222 23
Q ss_pred HHHhHhccCceeccHHHHHhhhccceeeecCcceeeecccc
Q 000839 983 MHTWTRVFGFTSLEESLKQEMRSLNMLVFPGIDMLQKLLLE 1023 (1260)
Q Consensus 983 ~~~Wt~kFGF~~v~~~~k~~l~~~~ll~F~GT~mLQK~L~~ 1023 (1260)
--..-.+|||..+-....- ....=.|=.+.+||+.|.+
T Consensus 129 Si~lh~~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 129 SIALHEKLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred hHHHHHHCCCEEecccccc---ccccceEEeeeeeehhhcc
Confidence 3344469999998763322 2233345567788888754
No 75
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=96.82 E-value=0.0067 Score=64.32 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=89.7
Q ss_pred cccchhhhhhhhhhcccccccccCCCCCchhhHHHhhcCCCCCcccccccEEEEEeeCCeEEEEEEEE---EecC--cee
Q 000839 864 VECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIR---FHGT--QLA 938 (1260)
Q Consensus 864 vEcnSKLAvALtIm~ECFdPIiD~rSGrDLIpdmVYn~GSnFkRLnfrGFYt~VLe~~~eVVsaAslR---V~G~--~lA 938 (1260)
+|+-...+....+.++.|.|- ....++...-- -.++++.- ..|-+.+++||+...+- +-|. .+.
T Consensus 8 ~e~~~d~~~i~~~~~~aF~~~----~e~~~v~~lR~-----~~~~~~~L--slVA~d~g~vvG~Il~s~v~~~g~~~~~~ 76 (171)
T COG3153 8 TETPADIPAIEALTREAFGPG----REAKLVDKLRE-----GGRPDLTL--SLVAEDDGEVVGHILFSPVTVGGEELGWL 76 (171)
T ss_pred ecChhhHHHHHHHHHHHhhcc----hHHHHHHHHHh-----cCCcccce--eEEEeeCCEEEEEEEEeEEEecCcccceE
Confidence 344444555566777888733 23344444421 11222222 33446779999866542 1112 344
Q ss_pred EeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceeccHHHHHhhhccceee---ecCcc
Q 000839 939 EMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEESLKQEMRSLNMLV---FPGID 1015 (1260)
Q Consensus 939 EmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v~~~~k~~l~~~~ll~---F~GT~ 1015 (1260)
=|=-+||.|+||+||+|++||...++.|+.+|...+++--.+. .| .+|||..... +.|.. +|.+.
T Consensus 77 ~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~---YY-~rfGF~~~~~--------~~l~~p~~~~~~~ 144 (171)
T COG3153 77 GLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPT---YY-SRFGFEPAAG--------AKLYAPGPVPDER 144 (171)
T ss_pred EEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc---cc-cccCcEEccc--------cccccCCCCCCce
Confidence 5556899999999999999999999999999999999766653 44 6999998865 22222 67788
Q ss_pred eeeeccc
Q 000839 1016 MLQKLLL 1022 (1260)
Q Consensus 1016 mLQK~L~ 1022 (1260)
+|-+.|.
T Consensus 145 fl~~~L~ 151 (171)
T COG3153 145 FLALELG 151 (171)
T ss_pred EEEEEcc
Confidence 8888885
No 76
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.66 E-value=0.0014 Score=81.17 Aligned_cols=69 Identities=30% Similarity=0.772 Sum_probs=50.1
Q ss_pred CCCCccCCCcCCCCC--CCCCCCCCCCcc--------------------ccccCCCCCCCCCCCCCCCCceeeCCcchhh
Q 000839 735 GCPSTFHQSCLDIQM--LPPGDWHCPNCT--------------------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKK 792 (1260)
Q Consensus 735 ~CpraFH~~CL~~~~--vPeGdW~Cp~C~--------------------C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~ 792 (1260)
.|+++||..|+++.. -|+++|.|+.|. |.+|+.. +.++.|+.|..+
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~------------g~~l~c~tC~~s 68 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADG------------GELLWCDTCPAS 68 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCC------------CcEEEeccccHH
Confidence 499999999999753 467999999885 4444332 347889999999
Q ss_pred hcccchhcccccccccCCCcceeeCCcc
Q 000839 793 YHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1260)
Q Consensus 793 YHv~CL~~~d~~~~~~~~~~~WFCsk~C 820 (1260)
||..|+.+.. ...+...|.|. .|
T Consensus 69 ~h~~cl~~pl----~~~p~~~~~c~-Rc 91 (696)
T KOG0383|consen 69 FHASCLGPPL----TPQPNGEFICP-RC 91 (696)
T ss_pred HHHHccCCCC----CcCCccceeee-ee
Confidence 9999997522 11222349997 66
No 77
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.31 E-value=0.0024 Score=66.24 Aligned_cols=30 Identities=40% Similarity=0.938 Sum_probs=24.9
Q ss_pred ccCCCcCCCC--CCCCCCCCCCCccccccCCC
Q 000839 739 TFHQSCLDIQ--MLPPGDWHCPNCTCKFCGLA 768 (1260)
Q Consensus 739 aFH~~CL~~~--~vPeGdW~Cp~C~C~~CG~~ 768 (1260)
.||++||+|| .+|+|+|+||.|.....+..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQS 32 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCc
Confidence 5999999987 49999999999987655543
No 78
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.19 E-value=0.0094 Score=57.39 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=58.3
Q ss_pred EEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhH--hccCcee
Q 000839 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT--RVFGFTS 994 (1260)
Q Consensus 917 VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt--~kFGF~~ 994 (1260)
||.-.|.+||=... .+.+||+.-.|.|+|||||+.+.++....+.|..+|+.-. +..+++-..+.. ..+||..
T Consensus 3 llgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y-~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFY-GHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred ccCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeE-eehHhccHHHHHHHHHCCCee
Confidence 56778888876554 4779999999999999999999999999999999999853 344433333322 4788887
Q ss_pred cc
Q 000839 995 LE 996 (1260)
Q Consensus 995 v~ 996 (1260)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 76
No 79
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.18 E-value=0.026 Score=57.54 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=59.0
Q ss_pred cccEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecch------hhHHH
Q 000839 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI------AELMH 984 (1260)
Q Consensus 911 rGFYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~------~ea~~ 984 (1260)
.-+|++ ..|+.+++|+.+.+.|. -|+|--+.|++.-||+|+|..|++.+.+.+ -+|...++.+. ..++.
T Consensus 38 ~~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~ 112 (128)
T PF12568_consen 38 HRLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMA 112 (128)
T ss_dssp EEEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHH
T ss_pred CeEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHH
Confidence 346776 89999999999999875 799999999999999999999999999998 55666665554 24445
Q ss_pred HhHhccCceecc
Q 000839 985 TWTRVFGFTSLE 996 (1260)
Q Consensus 985 ~Wt~kFGF~~v~ 996 (1260)
.....+||+..+
T Consensus 113 ~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 113 AFMQACGFSAQS 124 (128)
T ss_dssp HHHHHHT-EE-S
T ss_pred HHHHHcCccccC
Confidence 555589997654
No 80
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.06 E-value=0.027 Score=63.38 Aligned_cols=76 Identities=18% Similarity=0.057 Sum_probs=56.5
Q ss_pred eeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceecc
Q 000839 919 ERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1260)
Q Consensus 919 e~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v~ 996 (1260)
..+++|||.|+=.......+||= |+|.++|||||+.+++..++...+..-|+.-.|-.+ ..+--..-.|+||+...
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~~~~ 246 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFHFDF 246 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--EEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCcccc
Confidence 47899999887777777889985 799999999999999999999999999999988543 33333334589998653
No 81
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=96.05 E-value=0.0021 Score=54.16 Aligned_cols=48 Identities=21% Similarity=0.693 Sum_probs=31.7
Q ss_pred ccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhcccccccccCCCcceeeCCcch
Q 000839 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1260)
Q Consensus 762 C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~Ck 821 (1260)
|.+|+.... ...++.|+.|.++||..|+......... ....|+|. .|.
T Consensus 2 C~vC~~~~~---------~~~~i~C~~C~~~~H~~C~~~~~~~~~~--~~~~w~C~-~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDD---------DGDMIQCDSCNRWYHQECVGPPEKAEEI--PSGDWYCP-NCR 49 (51)
T ss_dssp BTTTTSSCT---------TSSEEEBSTTSCEEETTTSTSSHSHHSH--HSSSBSSH-HHH
T ss_pred CcCCCCcCC---------CCCeEEcCCCChhhCcccCCCChhhccC--CCCcEECc-CCc
Confidence 567776332 2359999999999999999864322111 12389995 553
No 82
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.85 E-value=0.0029 Score=74.96 Aligned_cols=49 Identities=31% Similarity=0.975 Sum_probs=38.9
Q ss_pred ccccccc-----CCCCceeeCCCCCccCCCcCCCC---CCCC-------CCCCCCCcc-------ccccCC
Q 000839 719 DTCGICG-----DGGDLICCDGCPSTFHQSCLDIQ---MLPP-------GDWHCPNCT-------CKFCGL 767 (1260)
Q Consensus 719 D~C~VCg-----dgGdLLcCD~CpraFH~~CL~~~---~vPe-------GdW~Cp~C~-------C~~CG~ 767 (1260)
.+|.||- +.|++|-||.|+-..|..|++.. ++|. .+|||..|. |.+|..
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn 190 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPN 190 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCC
Confidence 3899995 46789999999999999999963 2443 579999997 666743
No 84
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.83 E-value=0.0029 Score=77.92 Aligned_cols=37 Identities=30% Similarity=0.663 Sum_probs=27.7
Q ss_pred ceeeCCcchhh-hcccchhcccccccccCCCcceeeCCcchhH
Q 000839 782 ALLPCAMCEKK-YHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1260)
Q Consensus 782 ~LL~CdQCeR~-YHv~CL~~~d~~~~~~~~~~~WFCsk~CkeI 823 (1260)
.|+.|+.|... ||..||.+. +...+-..|+| ..|..+
T Consensus 229 VLLLCDsCN~~~YH~YCLDPd----l~eiP~~eWYC-~NC~dL 266 (1134)
T KOG0825|consen 229 VLLLCDSCNKVYYHVYCLDPD----LSESPVNEWYC-TNCSLL 266 (1134)
T ss_pred hheeecccccceeeccccCcc----cccccccceec-Ccchhh
Confidence 58999999988 999999852 22234578999 477643
No 85
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=95.70 E-value=0.0037 Score=70.24 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=26.9
Q ss_pred CCceeeCCc--ch-hhhcccchhcccccccccCCCcceeeCCcc
Q 000839 780 TSALLPCAM--CE-KKYHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1260)
Q Consensus 780 ~~~LL~CdQ--Ce-R~YHv~CL~~~d~~~~~~~~~~~WFCsk~C 820 (1260)
.+.|+.|+. |+ .|||..|+.-. ..+.+.|||+.++
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVGL~------~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVGLK------TKPKGKWYCPRCK 266 (274)
T ss_pred cccccccCCCCCCcceEEEeccccc------cCCCCcccchhhh
Confidence 346899987 99 99999999843 2355789998444
No 86
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.54 E-value=0.017 Score=48.38 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=37.8
Q ss_pred eeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCc
Q 000839 943 IGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1260)
Q Consensus 943 vAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 992 (1260)
++|.++|||||+|+.|+..+++.+...|+. ....++.+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 4455666776 6777
No 87
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.083 Score=52.28 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=67.0
Q ss_pred cccEEEEEeeCC--eEEEEEEEEEec----CceeEeeeeeeecccccCChhHHHHHHHHHHHhh-cCccEEEecchhhHH
Q 000839 911 SGFYTAILERGD--EIISAASIRFHG----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAELM 983 (1260)
Q Consensus 911 rGFYt~VLe~~~--eVVsaAslRV~G----~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA~~ea~ 983 (1260)
.+.|.+++..++ ++||.+.+.... ...+|+=..- .+.|+|||++...+.++...+-. +++.+|++-..+.-.
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 445666666544 999999998554 4567766554 89999999999999999998655 999999988887766
Q ss_pred HHhH--hccCceeccH
Q 000839 984 HTWT--RVFGFTSLEE 997 (1260)
Q Consensus 984 ~~Wt--~kFGF~~v~~ 997 (1260)
..+. .|+||+....
T Consensus 143 ~S~rv~ek~Gf~~eg~ 158 (187)
T COG1670 143 ASIRVYEKLGFRLEGE 158 (187)
T ss_pred HHHHHHHHcCChhhhh
Confidence 6665 5999988765
No 88
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=95.22 E-value=0.12 Score=54.41 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=85.3
Q ss_pred chhhhhhhhhhcccccccccCCCCCchhhHHHhhcCCCCCcccccccEEEEEee-CCeEEEEEEEEEe-----cCceeEe
Q 000839 867 NSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILER-GDEIISAASIRFH-----GTQLAEM 940 (1260)
Q Consensus 867 nSKLAvALtIm~ECFdPIiD~rSGrDLIpdmVYn~GSnFkRLnfrGFYt~VLe~-~~eVVsaAslRV~-----G~~lAEm 940 (1260)
.-+|-.-+..|+.+-.|.+-+.+ +|-.+- |..-.|.=.+.+.++. +.+|||-|.+..+ |.+.-=|
T Consensus 17 i~rLikela~Fek~~~~v~~te~--~l~~~~-------F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYl 87 (163)
T KOG3216|consen 17 ILRLIKELAEFEKLEDQVEATEE--NLARDG-------FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYL 87 (163)
T ss_pred HHHHHHHHHHHHHhccchhhchh--hhhhhh-------ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEE
Confidence 44555667777777777654322 222111 4444555566676666 8889998887643 3344456
Q ss_pred eeeeeecccccCChhHHHHHHHHHHHhhcCccEE---EecchhhHHHHhHhccCceeccH
Q 000839 941 PFIGTRHIYRRQGMCRRLFCALESALCSLKVEKL---IIPAIAELMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 941 PlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~L---vlpA~~ea~~~Wt~kFGF~~v~~ 997 (1260)
-=+=++++|||+|+|+.|++.+-+++..+|..+| |+.--.-|+.+|+ +.|++.+..
T Consensus 88 eDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~-k~gaq~l~~ 146 (163)
T KOG3216|consen 88 EDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYE-KVGAQDLKE 146 (163)
T ss_pred EeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHH-HhCccccce
Confidence 6678999999999999999999999999998885 5555567888998 788876654
No 89
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.14 E-value=0.0024 Score=51.87 Aligned_cols=34 Identities=41% Similarity=1.089 Sum_probs=20.3
Q ss_pred CCceeeCCCCCccCCCcCCCCCCCCC-CCCCCCcc
Q 000839 728 GDLICCDGCPSTFHQSCLDIQMLPPG-DWHCPNCT 761 (1260)
Q Consensus 728 GdLLcCD~CpraFH~~CL~~~~vPeG-dW~Cp~C~ 761 (1260)
..||.|+.|.-++|..|.++..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 35899999999999999999888887 89998773
No 90
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.05 E-value=0.0049 Score=81.72 Aligned_cols=45 Identities=40% Similarity=1.053 Sum_probs=39.2
Q ss_pred CCcccccccCCC---CceeeCCCCCccCCCcCCCC--CCCCCCCCCCCcc
Q 000839 717 NDDTCGICGDGG---DLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCT 761 (1260)
Q Consensus 717 ndD~C~VCgdgG---dLLcCD~CpraFH~~CL~~~--~vPeGdW~Cp~C~ 761 (1260)
....|.+|...+ +++.|+.|...||.+|+.|. .+|.++|+||.|+
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 346899997644 59999999999999999974 5999999999998
No 91
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.91 E-value=0.0099 Score=70.72 Aligned_cols=44 Identities=39% Similarity=1.010 Sum_probs=36.2
Q ss_pred CcccccccCCCC---ceeeCCCCCccCCCcCCCCC--CCC----CCCCCCCcc
Q 000839 718 DDTCGICGDGGD---LICCDGCPSTFHQSCLDIQM--LPP----GDWHCPNCT 761 (1260)
Q Consensus 718 dD~C~VCgdgGd---LLcCD~CpraFH~~CL~~~~--vPe----GdW~Cp~C~ 761 (1260)
...|+||...-+ |+.||.|...||+.||+||. +|. ..|+|.+|.
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 458999987654 89999999999999999874 454 469999883
No 92
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.78 E-value=0.037 Score=69.69 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=52.1
Q ss_pred eEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEec--chhhHHHHhHhccCceeccH-HHHHhhh-ccce
Q 000839 938 AEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP--AIAELMHTWTRVFGFTSLEE-SLKQEMR-SLNM 1008 (1260)
Q Consensus 938 AEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvlp--A~~ea~~~Wt~kFGF~~v~~-~~k~~l~-~~~l 1008 (1260)
++|-=|||.|++|++|||++|++.|.++++ -++..|-.. +.+++..||. |.||.+|-- .+|.... .|+.
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVhls~~rn~~SGeys~ 604 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVHLSPTRNASSGEYTA 604 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEEecCccCcCCCceeE
Confidence 455568999999999999999999999986 334433322 5899999999 899999875 3454443 3443
No 93
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.66 E-value=0.011 Score=70.50 Aligned_cols=44 Identities=32% Similarity=0.855 Sum_probs=35.3
Q ss_pred CcccccccCCC-----CceeeCCCCCccCCCcCCCCC------CCCCCCCCCCcc
Q 000839 718 DDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQM------LPPGDWHCPNCT 761 (1260)
Q Consensus 718 dD~C~VCgdgG-----dLLcCD~CpraFH~~CL~~~~------vPeGdW~Cp~C~ 761 (1260)
+..|.+|..++ +||.|+.|...||+.|..+.. -|.+.|||..|.
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 34599997543 699999999999999998753 355789999885
No 94
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=94.40 E-value=0.061 Score=57.57 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=61.4
Q ss_pred eeCCeEEEEEEEE-EecC-ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceecc
Q 000839 919 ERGDEIISAASIR-FHGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1260)
Q Consensus 919 e~~~eVVsaAslR-V~G~-~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v~ 996 (1260)
|...+||+-+-|- |..+ +..-+-.|.|....||||+|++||+..|..++..|...+.|..+. -..||+ ++||..-+
T Consensus 63 E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~D-Q~~FYe-~lGYe~c~ 140 (225)
T KOG3397|consen 63 EENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDD-QCRFYE-SLGYEKCD 140 (225)
T ss_pred ccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeeccc-chhhhh-hhcccccC
Confidence 3556788776553 3333 444566788999999999999999999999999999999987664 468999 79998776
Q ss_pred H
Q 000839 997 E 997 (1260)
Q Consensus 997 ~ 997 (1260)
+
T Consensus 141 P 141 (225)
T KOG3397|consen 141 P 141 (225)
T ss_pred c
Confidence 6
No 95
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=94.32 E-value=0.16 Score=50.02 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=61.2
Q ss_pred cccEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhH
Q 000839 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1260)
Q Consensus 911 rGFYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt 987 (1260)
.++|++ ..+|+.|+.++..-.|.+..-|+=--|.+++||||+++.|+......++.-|.+ ++|.-+-+...|.
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a~~~ 87 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVATYF 87 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHHHHH
Confidence 567775 788999999999888989999999999999999999999999999999999884 5566654444444
No 96
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=93.92 E-value=0.25 Score=46.02 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=47.2
Q ss_pred EeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEE
Q 000839 918 LERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKL 974 (1260)
Q Consensus 918 Le~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~L 974 (1260)
|..+|+.++...++. ..+.-.|--.-|.+++||||+++.||+++.+.++.-|.+-+
T Consensus 4 ~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 4 LKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 356788999999987 56788888889999999999999999999999999887644
No 97
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=93.90 E-value=0.14 Score=55.62 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=64.6
Q ss_pred cEEEEEeeCCeEEEEEEEEEe---cCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEec---chhhHHHHh
Q 000839 913 FYTAILERGDEIISAASIRFH---GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP---AIAELMHTW 986 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~---G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvlp---A~~ea~~~W 986 (1260)
-|.+..+..+++|+-+++|+- |-.++=.-=|-+.+.|||+|+|+.|++.+|.+....+.+.++|- .-.-+++|+
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 467777777799999999963 33344444456677899999999999999999888888866554 445678888
Q ss_pred HhccCceeccH
Q 000839 987 TRVFGFTSLEE 997 (1260)
Q Consensus 987 t~kFGF~~v~~ 997 (1260)
. ++||-+.+.
T Consensus 173 ~-~~gf~~~~~ 182 (202)
T KOG2488|consen 173 H-RLGFVVDEE 182 (202)
T ss_pred H-HcCcccCCC
Confidence 8 799988764
No 98
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=93.87 E-value=0.2 Score=57.43 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=70.5
Q ss_pred cEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCc
Q 000839 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF 992 (1260)
.++++...+++||+|+++ .| --|+-|||++.+||-|.--.|+.++...+-++|...||+=.-++-..+.. .+||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aG---nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AG---NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--cc---ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 467777888999999997 67 45899999999999999999999999999999999999888888777777 6999
Q ss_pred eeccH
Q 000839 993 TSLEE 997 (1260)
Q Consensus 993 ~~v~~ 997 (1260)
..|..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99876
No 99
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=92.87 E-value=0.12 Score=55.74 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=59.3
Q ss_pred ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcC-ccEEEecch---hhHHHHhHhccCceeccHHHHHhhhccceeee
Q 000839 936 QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLK-VEKLIIPAI---AELMHTWTRVFGFTSLEESLKQEMRSLNMLVF 1011 (1260)
Q Consensus 936 ~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~Lg-Ve~LvlpA~---~ea~~~Wt~kFGF~~v~~~~k~~l~~~~ll~F 1011 (1260)
++.-|-.++|.+.||..|+|..|++.+.+.....+ +.++++.+. ..|+.+++ ++||+.+....-. +....-
T Consensus 88 ~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~~~~~----y~~~~~ 162 (187)
T KOG3138|consen 88 RVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVERLKNY----YSILGP 162 (187)
T ss_pred ceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeeccccc----cccccC
Confidence 36778899999999999999999999999999988 565555443 46777777 8999998652211 222223
Q ss_pred cCcceeeecccc
Q 000839 1012 PGIDMLQKLLLE 1023 (1260)
Q Consensus 1012 ~GT~mLQK~L~~ 1023 (1260)
|-...|.|.|..
T Consensus 163 ~~~~~l~~~~~~ 174 (187)
T KOG3138|consen 163 PDDSFLRKLLIH 174 (187)
T ss_pred cchhhhhhheec
Confidence 444555566543
No 100
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=92.78 E-value=0.64 Score=44.59 Aligned_cols=62 Identities=18% Similarity=0.025 Sum_probs=55.0
Q ss_pred cEEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEE
Q 000839 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lv 975 (1260)
...++|..+|++|+++..-+++ +.+..-++++.++|++.+.+..|+..+.+.+.+.|++.+=
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d 132 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFD 132 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEE
Confidence 5667788899999999776665 5788999999999999999999999999999999998875
No 101
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=92.56 E-value=0.1 Score=55.14 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=49.6
Q ss_pred eEeeeeeeecccccCChhHHHHHH-HHHHHhhcCccEEEecchhhHHHHhHhccCceeccH
Q 000839 938 AEMPFIGTRHIYRRQGMCRRLFCA-LESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 938 AEmPlvAT~~~yRrQGmgR~Lv~a-IE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v~~ 997 (1260)
+-|-.+|+.++||.||++..|+.. |..+-..-=|.+.+|=+-..+++||. +|||+.|.+
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 455578999999999999999887 55555556678889989999999999 899999986
No 102
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=90.70 E-value=0.36 Score=56.58 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=64.9
Q ss_pred CcccccccEEEEEeeCCeEEEEEEEEEe------cC---ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEe
Q 000839 906 NRLNYSGFYTAILERGDEIISAASIRFH------GT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII 976 (1260)
Q Consensus 906 kRLnfrGFYt~VLe~~~eVVsaAslRV~------G~---~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lvl 976 (1260)
+-+++.++|++ ..+.++++ .|++. |. ..|-|-.||+-|+|||+|+-|.|+....+..+.-|+.-.+|
T Consensus 34 kil~~~n~~vi--~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L 109 (389)
T COG4552 34 KILAEPNSYVI--YMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSAL 109 (389)
T ss_pred hhccCCcceEE--eehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEe
Confidence 34567777775 56666654 33333 33 55778899999999999999999999999999999999887
Q ss_pred cchhhHHHHhHhccCceeccH
Q 000839 977 PAIAELMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 977 pA~~ea~~~Wt~kFGF~~v~~ 997 (1260)
.+.. ..+|. ||||..-..
T Consensus 110 ~P~s--~~iYr-KfGye~asn 127 (389)
T COG4552 110 HPFS--GGIYR-KFGYEYASN 127 (389)
T ss_pred ccCc--hhhHh-hccccccce
Confidence 6554 46777 899976553
No 103
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=87.66 E-value=1.7 Score=46.60 Aligned_cols=83 Identities=13% Similarity=0.254 Sum_probs=64.4
Q ss_pred eCCeEEEEEEEEEecC-----ceeEeeeeeeecccccCChhHHHHHHHHH-HHhhcCccEEEecchh---hHHHHhHhcc
Q 000839 920 RGDEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALES-ALCSLKVEKLIIPAIA---ELMHTWTRVF 990 (1260)
Q Consensus 920 ~~~eVVsaAslRV~G~-----~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~-~L~~LgVe~LvlpA~~---ea~~~Wt~kF 990 (1260)
.+|.|||-.....+-. .-.-|-.+||.-.|||.|+++.||..-.. ++...+.+.+-|..+. .|++.|++.+
T Consensus 49 ~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl 128 (193)
T KOG3235|consen 49 ENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTL 128 (193)
T ss_pred CCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhcc
Confidence 7899999877665541 13457799999999999999999986544 4566777888777775 5899999999
Q ss_pred CceeccHHHHHh
Q 000839 991 GFTSLEESLKQE 1002 (1260)
Q Consensus 991 GF~~v~~~~k~~ 1002 (1260)
||.+.+-+-+.+
T Consensus 129 ~F~v~eve~kYY 140 (193)
T KOG3235|consen 129 GFVVCEVEPKYY 140 (193)
T ss_pred ceEEeecccccc
Confidence 999988655443
No 104
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=86.95 E-value=1.2 Score=48.02 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=55.4
Q ss_pred cEEEEEeeCCeEEEEEEEEEecCceeEee-----eeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHH
Q 000839 913 FYTAILERGDEIISAASIRFHGTQLAEMP-----FIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELM 983 (1260)
Q Consensus 913 FYt~VLe~~~eVVsaAslRV~G~~lAEmP-----lvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~ 983 (1260)
.|.+|-+ ++++||...||-.=.+ ..++ --+|+|..||+||++.++.-..+.++.||++.+.+-+..+-.
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ 143 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNI 143 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence 3556555 8999999999964332 3333 357999999999999999999999999999999988876543
No 105
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=85.90 E-value=0.73 Score=49.04 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=43.8
Q ss_pred eEeeeeeeecccccCChhHHHHHHHHHHHhhcCccE---EEecchhhHHHHhHhccCcee
Q 000839 938 AEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEK---LIIPAIAELMHTWTRVFGFTS 994 (1260)
Q Consensus 938 AEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~---LvlpA~~ea~~~Wt~kFGF~~ 994 (1260)
+-+--|++.|.||++|++..||+.+|.....-+.-. +|.-.-.-|+.+|+ +|||.+
T Consensus 70 ~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~ 128 (173)
T KOG3234|consen 70 GHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSV 128 (173)
T ss_pred eEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceE
Confidence 345568899999999999999999999987765444 44444456899999 799875
No 106
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=83.87 E-value=0.58 Score=52.69 Aligned_cols=35 Identities=17% Similarity=0.563 Sum_probs=26.9
Q ss_pred CceeeCC--cch-hhhcccchhcccccccccCCCcceeeCCcchh
Q 000839 781 SALLPCA--MCE-KKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1260)
Q Consensus 781 ~~LL~Cd--QCe-R~YHv~CL~~~d~~~~~~~~~~~WFCsk~Cke 822 (1260)
+.|+-|| -|+ .|||..|+.. ..+|.+.|+| ..|+.
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVGL------k~pPKG~WYC-~eCk~ 269 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVGL------KEPPKGKWYC-PECKK 269 (271)
T ss_pred ccceecCCCCCchhheecccccc------CCCCCCcEeC-HHhHh
Confidence 4689997 487 6899999984 2346799999 68875
No 107
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=83.80 E-value=0.94 Score=54.78 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=50.5
Q ss_pred EEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceeccH
Q 000839 930 IRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 930 lRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v~~ 997 (1260)
|+|+|.. +|.=-....+|+||||+.||+..|+.+++-+.+++.+=+---+..-|. ||||...-+
T Consensus 446 lhvyg~~---vpig~~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 446 LHVYGSE---VPIGKREDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred hhccccc---cccccCcchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 5688843 443333588999999999999999999999999887766667777777 899986543
No 108
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=83.53 E-value=1 Score=42.07 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=38.3
Q ss_pred HhcCeeeeeccCCC---CCcccceeeCCCCceeeehHHHHHHHHHHhccccccCCCCCCCCCCcC
Q 000839 404 VEAGWTIDYRPRKN---RDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTP 465 (1260)
Q Consensus 404 ~~agwtid~rpr~~---r~y~d~vy~~p~g~~~wsi~kay~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1260)
|-.||+...+.|.+ ..-.|..|++|.|+.+.|...-...| +..........+-|.|.+
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL----~~~~~~~~l~~~~F~F~~ 71 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYL----KENPSEHDLKPENFSFSK 71 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHH----TTSS---SS-CTTBBTTT
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHH----HhCCCcccCCHhHCCCCC
Confidence 56799999998884 35799999999999999987665555 332222223334566643
No 109
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=82.01 E-value=7.1 Score=42.41 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=56.8
Q ss_pred EEEEEeeCCeEEEEEEE-EEec----C--ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHh
Q 000839 914 YTAILERGDEIISAASI-RFHG----T--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTW 986 (1260)
Q Consensus 914 Yt~VLe~~~eVVsaAsl-RV~G----~--~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~W 986 (1260)
|.++|.-.+.||+..++ +.+. . .+-=+=+.=+.|+|||+|+++.+...+-+.+.. +=...++.+...+..+|
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~-~~~N~~~~~~~~~~~~w 126 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDS-VDDNSVAQGNVKMSNFW 126 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhcc-CCCceeeecCHHHHHHH
Confidence 55555555668776655 3332 1 355555556899999999997544444455555 33456677888999999
Q ss_pred HhccCceeccH
Q 000839 987 TRVFGFTSLEE 997 (1260)
Q Consensus 987 t~kFGF~~v~~ 997 (1260)
..-|||..+..
T Consensus 127 ~k~~G~~~~~h 137 (181)
T PF06852_consen 127 HKMFGFDDYGH 137 (181)
T ss_pred HHHhCCCCCcc
Confidence 99999887766
No 110
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=81.59 E-value=0.91 Score=59.53 Aligned_cols=34 Identities=21% Similarity=0.543 Sum_probs=26.2
Q ss_pred CCceeeCCcchhhhcccchhcccccccccCCCcceeeCCcc
Q 000839 780 TSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1260)
Q Consensus 780 ~~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~C 820 (1260)
.+.+++|+.|..++|+.|+.- + ..+.+.|+| ..|
T Consensus 233 ~n~ivfCD~Cnl~VHq~Cygi----~--~ipeg~WlC-r~C 266 (1051)
T KOG0955|consen 233 SNVIVFCDGCNLAVHQECYGI----P--FIPEGQWLC-RRC 266 (1051)
T ss_pred CceEEEcCCCcchhhhhccCC----C--CCCCCcEee-hhh
Confidence 356999999999999999982 1 235688998 455
No 111
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=80.29 E-value=2 Score=51.77 Aligned_cols=65 Identities=22% Similarity=0.497 Sum_probs=42.1
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhccccc---c-cc--cCCCcceeeCCcchhHH
Q 000839 754 DWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDAL---S-DN--LTGLVTSFCGRKCQELS 824 (1260)
Q Consensus 754 dW~Cp~C~C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~~d~~---~-~~--~~~~~~WFCsk~CkeI~ 824 (1260)
+=||..|.|.+|.+.+.. ......+.|+.|..|.|..|--....+ + .. .....--|+|..|....
T Consensus 123 ~gFC~~C~C~iC~kfD~~------~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~s 193 (446)
T PF07227_consen 123 PGFCRRCMCCICSKFDDN------KNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTS 193 (446)
T ss_pred CCccccCCccccCCcccC------CCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChh
Confidence 358999999999875432 234458999999999999996432211 1 11 01124467778888544
No 112
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=78.95 E-value=2.7 Score=39.67 Aligned_cols=57 Identities=28% Similarity=0.529 Sum_probs=41.4
Q ss_pred HhcCeeeeeccCCC--CCcccceeeCCCCceeeehHHHHHHHHHHhccccccCCCCCCCCCCcC
Q 000839 404 VEAGWTIDYRPRKN--RDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTP 465 (1260)
Q Consensus 404 ~~agwtid~rpr~~--r~y~d~vy~~p~g~~~wsi~kay~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1260)
|-.||+....+|++ .-..|..||+|.|+.+=|... +.+.|++.. ..-+....|.|++
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~e----v~~yL~~~~-~~~~~~~~FdF~~ 65 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVE----LARYLEKNG-PTSLDLSDFDFTV 65 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHH----HHHHHHhCC-CCCCcHhHcccCC
Confidence 56899999999998 889999999999998877654 344455432 2234445577764
No 113
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=77.83 E-value=14 Score=41.34 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=68.4
Q ss_pred CCCCCcccccccEEEEEe-eCCeEEEEEEEEEe------------------------------cCceeEeeeeeeecccc
Q 000839 902 GSNFNRLNYSGFYTAILE-RGDEIISAASIRFH------------------------------GTQLAEMPFIGTRHIYR 950 (1260)
Q Consensus 902 GSnFkRLnfrGFYt~VLe-~~~eVVsaAslRV~------------------------------G~~lAEmPlvAT~~~yR 950 (1260)
+-++..+|-.-.|.+|.. .++++||++-|.-. ...++|+==+|+.++||
T Consensus 45 ~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r 124 (241)
T TIGR03694 45 GLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFR 124 (241)
T ss_pred CCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHh
Confidence 345566666556666654 35889888776431 13588888999999999
Q ss_pred cC--------C--------------------hhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCcee
Q 000839 951 RQ--------G--------------------MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1260)
Q Consensus 951 rQ--------G--------------------mgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1260)
++ | +...|+.++-+.+...|+++++.-+.+-+..++. ++|+..
T Consensus 125 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~ 195 (241)
T TIGR03694 125 RRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQF 195 (241)
T ss_pred CCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCce
Confidence 74 2 3467999999999999999999888887777775 788654
No 114
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=77.39 E-value=4.5 Score=39.90 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=43.5
Q ss_pred CcccccccEEEEEeeCCeEEEEEEEEEec--CceeEeeeeeeecccccCChhHHHHHHHHHHH
Q 000839 906 NRLNYSGFYTAILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1260)
Q Consensus 906 kRLnfrGFYt~VLe~~~eVVsaAslRV~G--~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L 966 (1260)
.++. ..++++ .++...+||.+.--+ ..++-|=.+|+.+..|++|+++.|+++|-+..
T Consensus 5 ~~l~--~~~~~y--~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 5 DRLQ--RLHAIY--LSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred hhcC--cceEEE--EeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 4454 334443 345677788886544 58999999999999999999999999998773
No 115
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=76.06 E-value=2.2 Score=51.96 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=35.2
Q ss_pred CCCcccccccCCCCceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000839 716 PNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 716 ~ndD~C~VCgdgGdLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
.+.++|++|.++|.+++|+.|..++|..|.... .|...|.|..|.
T Consensus 87 ~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~-~~~c~~~~~d~~ 131 (463)
T KOG1081|consen 87 IEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQ-LEKCSKRCTDCR 131 (463)
T ss_pred CCcchhccccCCCccceeccccccccccCcCcc-CcccccCCccee
Confidence 456899999999999999988888888888543 456666665554
No 116
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=76.02 E-value=1.2 Score=60.38 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=36.8
Q ss_pred ccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhcccccccccCCCcceeeCCcchhHHH
Q 000839 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1260)
Q Consensus 762 C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~CkeI~e 825 (1260)
|.+|.....+ ..|+.|+.|..+||..|+++. ....+.+.|+|+ .|..-..
T Consensus 1111 c~~cr~k~~~---------~~m~lc~~c~~~~h~~C~rp~----~~~~~~~dW~C~-~c~~e~~ 1160 (1404)
T KOG1245|consen 1111 CKVCRRKKQD---------EKMLLCDECLSGFHLFCLRPA----LSSVPPGDWMCP-SCRKEHR 1160 (1404)
T ss_pred hhhhhhcccc---------hhhhhhHhhhhhHHHHhhhhh----hccCCcCCccCC-ccchhhh
Confidence 7788766543 348999999999999999963 233456779995 7765554
No 117
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=73.32 E-value=0.6 Score=60.70 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=40.2
Q ss_pred CCcccccccCCCCceeeCC-CCCccCC-CcCCCC----CCCCCCCCCCCcc
Q 000839 717 NDDTCGICGDGGDLICCDG-CPSTFHQ-SCLDIQ----MLPPGDWHCPNCT 761 (1260)
Q Consensus 717 ndD~C~VCgdgGdLLcCD~-CpraFH~-~CL~~~----~vPeGdW~Cp~C~ 761 (1260)
+.+.|.||+..+.++||++ ||..||+ .||+-. .++++.|+|+.|.
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~ 477 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEI 477 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHH
Confidence 4578999999999999998 9999998 999942 4899999999997
No 118
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=72.91 E-value=2.1 Score=53.98 Aligned_cols=46 Identities=17% Similarity=0.561 Sum_probs=32.0
Q ss_pred ccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhcccccccccCCCcceeeCCcch
Q 000839 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1260)
Q Consensus 762 C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~Ck 821 (1260)
|.+|..++.+. ...|++|+.|.-..|..|+.-.. .+.++|.|. .|.
T Consensus 274 CDvCrspD~e~-------~neMVfCd~Cn~cVHqaCyGIle------~p~gpWlCr-~Ca 319 (893)
T KOG0954|consen 274 CDVCRSPDSEE-------ANEMVFCDKCNICVHQACYGILE------VPEGPWLCR-TCA 319 (893)
T ss_pred eceecCCCccc-------cceeEEeccchhHHHHhhhceee------cCCCCeeeh-hcc
Confidence 55666554432 24699999999999999998321 245889994 553
No 119
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=71.87 E-value=0.97 Score=43.07 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=26.2
Q ss_pred CceeeccceeeccCCcccCCc-eeeeccCCcchhh
Q 000839 656 SKILTVSKFEIHAGSKLRQPF-QNIYLDSGVSLLQ 689 (1260)
Q Consensus 656 ~kvfSpSeFEaHAGsk~rqPy-~nIyLedG~SLle 689 (1260)
.++|||++||.|+|....+.| .+|++ .|.+|-.
T Consensus 41 g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~ 74 (82)
T PF01342_consen 41 GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGK 74 (82)
T ss_dssp TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHH
T ss_pred CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHH
Confidence 679999999999999888888 67776 7888763
No 120
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=70.98 E-value=1.1 Score=53.48 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCCCCCCcc-------ccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhc
Q 000839 753 GDWHCPNCT-------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1260)
Q Consensus 753 GdW~Cp~C~-------C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~ 800 (1260)
..-||..|- |.+|+.+---...+++ .+.-..=+|-||+.|+..
T Consensus 381 n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~e-----tvRvvamdr~fHv~CY~C 430 (468)
T KOG1701|consen 381 NNVYCVPDFHKKFAPRCSVCGNPILPRDGKDE-----TVRVVAMDRDFHVNCYKC 430 (468)
T ss_pred CceeeehhhhhhcCcchhhccCCccCCCCCcc-----eEEEEEccccccccceeh
Confidence 346676653 8888876532211111 111112368899999874
No 121
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=70.60 E-value=2.7 Score=40.80 Aligned_cols=66 Identities=24% Similarity=0.628 Sum_probs=41.4
Q ss_pred ccccccCCCCceeeCCCCCccCCCcCCC-C----------------CCCCC--CCCCCCccccccCCCCCCCCCCCCCCC
Q 000839 720 TCGICGDGGDLICCDGCPSTFHQSCLDI-Q----------------MLPPG--DWHCPNCTCKFCGLAGEDDAEGDDTTT 780 (1260)
Q Consensus 720 ~C~VCgdgGdLLcCD~CpraFH~~CL~~-~----------------~vPeG--dW~Cp~C~C~~CG~~~~ds~eed~~S~ 780 (1260)
.|.+|...|.++--..-....|..|.-. + .++.. .+. |.+|+...+
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~-----C~iC~~~~G---------- 66 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLK-----CSICGKSGG---------- 66 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCc-----CcCCCCCCc----------
Confidence 4888876544443334577888888742 1 01111 222 556765532
Q ss_pred CceeeCCc--chhhhcccchhcc
Q 000839 781 SALLPCAM--CEKKYHKLCMQEM 801 (1260)
Q Consensus 781 ~~LL~CdQ--CeR~YHv~CL~~~ 801 (1260)
..+.|.. |...||+.|....
T Consensus 67 -~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 67 -ACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred -eeEEcCCCCCCcCCCHHHHHHC
Confidence 4789988 9999999998753
No 122
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=70.21 E-value=6.5 Score=35.36 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.0
Q ss_pred HhcCeeeeeccCCC--CCcccceeeCCCCceeeehHHHHHHH
Q 000839 404 VEAGWTIDYRPRKN--RDYLDAVYINPTGTAYWSIIKAYDAL 443 (1260)
Q Consensus 404 ~~agwtid~rpr~~--r~y~d~vy~~p~g~~~wsi~kay~~~ 443 (1260)
+-.||+-..++|++ .-..|..|++|.|+..=|....-..|
T Consensus 6 ~p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL 47 (62)
T cd00122 6 LPPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYL 47 (62)
T ss_pred CCCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHH
Confidence 36799999999998 89999999999999887765544444
No 123
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=68.96 E-value=2.3 Score=51.70 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=25.4
Q ss_pred CCceeeCCcchhhhcccchhcccccccccCCCcceeeCCcc
Q 000839 780 TSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1260)
Q Consensus 780 ~~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~C 820 (1260)
.+.+++|+-|+-..|+.|+.-. . .+.+.|+| +.|
T Consensus 207 ~naiVfCdgC~i~VHq~CYGI~-f-----~peG~WlC-rkC 240 (669)
T COG5141 207 SNAIVFCDGCEICVHQSCYGIQ-F-----LPEGFWLC-RKC 240 (669)
T ss_pred cceEEEecCcchhhhhhcccce-e-----cCcchhhh-hhh
Confidence 4579999999999999999732 1 24577887 344
No 124
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=68.10 E-value=7.3 Score=42.35 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=42.4
Q ss_pred eeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhH
Q 000839 937 LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1260)
Q Consensus 937 lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt 987 (1260)
+||+=|.|++++.+|.|++..| .++--.|+.|||..-|--.+..+..-.+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~ 134 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE 134 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH
Confidence 6999999999999999999976 6999999999998777666666655555
No 125
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=66.66 E-value=27 Score=37.69 Aligned_cols=67 Identities=10% Similarity=0.220 Sum_probs=51.5
Q ss_pred cccccEEEEEee--CCeEEE-----EEEEEEecC--ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEE
Q 000839 909 NYSGFYTAILER--GDEIIS-----AASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1260)
Q Consensus 909 nfrGFYt~VLe~--~~eVVs-----aAslRV~G~--~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lv 975 (1260)
+|.-.|.+.+.. ++++|| -+.+||++. +.+||=|+-+...+|.+++.=.|+.+|-+.+..-||-.=+
T Consensus 73 g~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 73 GWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp T--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred CCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 344556666654 688888 467899888 8999999999999999999999999999998887775543
No 126
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.24 E-value=4.3 Score=47.93 Aligned_cols=45 Identities=33% Similarity=0.727 Sum_probs=31.5
Q ss_pred cccccccC---CCCceeeCCCCCccCCCcCCCCCCCCCCCCCCCccccc
Q 000839 719 DTCGICGD---GGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKF 764 (1260)
Q Consensus 719 D~C~VCgd---gGdLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~C~~ 764 (1260)
+.|.||-+ .|+.|-==-|...||..|.++..... .=+||-|+|.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcC
Confidence 79999976 45533334588999999999864433 33688887643
No 127
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=63.92 E-value=18 Score=39.80 Aligned_cols=85 Identities=20% Similarity=0.179 Sum_probs=46.0
Q ss_pred hhhhhhhhhhcccccccccCCCCCchhhHHHhhcCCCCCcccccccEEEEEeeCC--eEEEEEEEEEecCceeEeeeeee
Q 000839 868 SKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGD--EIISAASIRFHGTQLAEMPFIGT 945 (1260)
Q Consensus 868 SKLAvALtIm~ECFdPIiD~rSGrDLIpdmVYn~GSnFkRLnfrGFYt~VLe~~~--eVVsaAslRV~G~~lAEmPlvAT 945 (1260)
..-++.|.+|--+|. |..| +.| ..+.--||++.-..++ .+||-=|---+..+---|--|-|
T Consensus 26 ~~yCqnLcLlaKLFL---d~Kt-------lyy-------dv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLFL---DHKT-------LYY-------DVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGC-------CTT--------STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHHh---hCeE-------EEe-------ecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 344566666666666 4333 222 2233446766544433 34443332222222235667899
Q ss_pred ecccccCChhHHHHHHHHHHHhhc
Q 000839 946 RHIYRRQGMCRRLFCALESALCSL 969 (1260)
Q Consensus 946 ~~~yRrQGmgR~Lv~aIE~~L~~L 969 (1260)
.|.||++|+|+.|++.-=.+.+.-
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred cchhhhcchhhhhhhhHHHHhhcc
Confidence 999999999999998755554433
No 128
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=63.16 E-value=3.5 Score=36.98 Aligned_cols=29 Identities=31% Similarity=1.049 Sum_probs=25.3
Q ss_pred cccccccC----CCCceeeCCCCCccCCCcCCC
Q 000839 719 DTCGICGD----GGDLICCDGCPSTFHQSCLDI 747 (1260)
Q Consensus 719 D~C~VCgd----gGdLLcCD~CpraFH~~CL~~ 747 (1260)
..|.+|++ +++.+.|..|...||..|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 57999985 678999999999999999853
No 129
>smart00258 SAND SAND domain.
Probab=62.99 E-value=3.6 Score=38.89 Aligned_cols=40 Identities=33% Similarity=0.517 Sum_probs=30.7
Q ss_pred CcccCCC---CceeeccceeeccCCcccCCc-eeeeccCCcchhh
Q 000839 649 GIHCGCC---SKILTVSKFEIHAGSKLRQPF-QNIYLDSGVSLLQ 689 (1260)
Q Consensus 649 GI~C~CC---~kvfSpSeFEaHAGsk~rqPy-~nIyLedG~SLle 689 (1260)
||.+.|= +++|||++||.+||....+.| ..|+. +|++|..
T Consensus 22 G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~ 65 (73)
T smart00258 22 GISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRT 65 (73)
T ss_pred CcccCCccCCCEEEChHHHHhhcCCcccCCcchheeE-CCccHHH
Confidence 6655552 578999999999999888888 56654 7888763
No 130
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=59.50 E-value=42 Score=35.02 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=55.6
Q ss_pred EEEeeCCeEEEEEEEE--EecC-----ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHh
Q 000839 916 AILERGDEIISAASIR--FHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTR 988 (1260)
Q Consensus 916 ~VLe~~~eVVsaAslR--V~G~-----~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~ 988 (1260)
+++..+|.+|+-|.+- +|-. .++|+=.| ..||++||||....+|-.+.+.+ -+-.++|--..|+++|.
T Consensus 40 ~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi---~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK- 114 (143)
T COG5628 40 WLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIV---RKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK- 114 (143)
T ss_pred eEEEECCceeeeeeeecccCCCCcccccchheEee---ehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH-
Confidence 3446788999987652 2222 45665444 47999999999999998875432 23456777888999999
Q ss_pred ccCcee-ccHHHHHhhh
Q 000839 989 VFGFTS-LEESLKQEMR 1004 (1260)
Q Consensus 989 kFGF~~-v~~~~k~~l~ 1004 (1260)
+|-++. +..++++...
T Consensus 115 ~~~~t~~i~~E~r~d~~ 131 (143)
T COG5628 115 RVAETYPVVEEDRQDAR 131 (143)
T ss_pred hhhcccccchhhhhccc
Confidence 454443 3345555444
No 131
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=58.45 E-value=4.5 Score=50.91 Aligned_cols=36 Identities=28% Similarity=0.635 Sum_probs=27.7
Q ss_pred CCCceeeCC--cchhhhcccchhcccccccccCCCcceeeCCcch
Q 000839 779 TTSALLPCA--MCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1260)
Q Consensus 779 S~~~LL~Cd--QCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~Ck 821 (1260)
..+.|++|| -|.-+.|+.|+.-.. .+.++||| ..|.
T Consensus 18 aeNPLVYCDG~nCsVAVHQaCYGIvq------VPtGpWfC-rKCe 55 (900)
T KOG0956|consen 18 AENPLVYCDGHNCSVAVHQACYGIVQ------VPTGPWFC-RKCE 55 (900)
T ss_pred ccCceeeecCCCceeeeehhcceeEe------cCCCchhh-hhhh
Confidence 346799997 599999999998432 35689999 5774
No 132
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.69 E-value=4.5 Score=48.93 Aligned_cols=40 Identities=35% Similarity=0.572 Sum_probs=26.7
Q ss_pred CcccccccC---CC-CceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000839 718 DDTCGICGD---GG-DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 718 dD~C~VCgd---gG-dLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
-.+|.||-. .. ..|.---|..+||..|+... ++-.||-|+
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w----~~~scpvcR 218 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW----WDSSCPVCR 218 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhc----ccCcChhhh
Confidence 358999964 22 24555568999999999653 333577665
No 133
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=57.59 E-value=37 Score=38.94 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=61.1
Q ss_pred EEEEe-eCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhh--HHHHhHhccC
Q 000839 915 TAILE-RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE--LMHTWTRVFG 991 (1260)
Q Consensus 915 t~VLe-~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e--a~~~Wt~kFG 991 (1260)
.++++ .+|++|+++.+..++ +.+.....|+.++|++.+-.-.|+-.+.+.+.+-|++.+=+=.... -+-.+..+||
T Consensus 197 l~~a~~~~g~~va~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFR-DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeC-CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 689999888876665 4455568889999999999999999999999999999987643322 2334556788
Q ss_pred ceecc
Q 000839 992 FTSLE 996 (1260)
Q Consensus 992 F~~v~ 996 (1260)
|.+++
T Consensus 276 ~~~~~ 280 (330)
T TIGR03019 276 FEPQP 280 (330)
T ss_pred Ceecc
Confidence 88765
No 134
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=56.18 E-value=17 Score=36.10 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=34.0
Q ss_pred EEEEEEEEEec-CceeEeeeeeeecccccCChhHHHHHHHHHHH
Q 000839 924 IISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1260)
Q Consensus 924 VVsaAslRV~G-~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L 966 (1260)
.=+||.+.--. ..++-|=.+|+.+..|++|+++.|+++|-+..
T Consensus 20 y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 20 YNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred CcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 33455554322 36899999999999999999999999998874
No 135
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=54.13 E-value=5.8 Score=32.63 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=15.9
Q ss_pred CceeeCCcchhhhcccchhcccccccccCCCcceeeC
Q 000839 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCG 817 (1260)
Q Consensus 781 ~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCs 817 (1260)
+.|+.|+.|.-..|..|+.-... .....|+|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~-----~~~~~W~C~ 33 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEV-----PDGDDWLCD 33 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS-------SS-----H
T ss_pred CceEEeCCCCCcCChhhCCcccC-----CCCCcEECC
Confidence 35899999999999999984321 122359983
No 136
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=52.75 E-value=20 Score=41.65 Aligned_cols=61 Identities=18% Similarity=0.069 Sum_probs=35.6
Q ss_pred cccccEEEEEe--eCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhc
Q 000839 909 NYSGFYTAILE--RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL 969 (1260)
Q Consensus 909 nfrGFYt~VLe--~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~L 969 (1260)
+.--||++.-. .+..+||-=|==.+-.+---|--|-|.|.||++|+|+.|++.-=++.+.-
T Consensus 125 ~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~E 187 (290)
T PLN03238 125 DPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKRE 187 (290)
T ss_pred cceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhcc
Confidence 33445655422 23355553332222112233678899999999999999998655544333
No 137
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=52.33 E-value=8.8 Score=34.57 Aligned_cols=34 Identities=29% Similarity=0.849 Sum_probs=26.4
Q ss_pred CccccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhc
Q 000839 759 NCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1260)
Q Consensus 759 ~C~C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~ 800 (1260)
.++|..|+..-.+ ...++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~--------~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKD--------GDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccC--------CCCEEECCCCCCcccHHHHhh
Confidence 4568888876532 234899999999999999875
No 138
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=49.51 E-value=1.1e+02 Score=33.63 Aligned_cols=92 Identities=8% Similarity=0.103 Sum_probs=66.0
Q ss_pred CCCCCccccc-ccEEEEEeeCCeEEEEEEE----------E----Ee-------cCceeEeeeeeeecccc---cCC---
Q 000839 902 GSNFNRLNYS-GFYTAILERGDEIISAASI----------R----FH-------GTQLAEMPFIGTRHIYR---RQG--- 953 (1260)
Q Consensus 902 GSnFkRLnfr-GFYt~VLe~~~eVVsaAsl----------R----V~-------G~~lAEmPlvAT~~~yR---rQG--- 953 (1260)
|-++..+|.. -.|.+.+..+|+|||++-| . ++ ..++.|+==+|+.+.++ +.+
T Consensus 42 g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~ 121 (207)
T PRK13834 42 GEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLH 121 (207)
T ss_pred CcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccC
Confidence 4455666644 4677777788899997744 0 11 24788998899988863 222
Q ss_pred -hhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCcee
Q 000839 954 -MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1260)
Q Consensus 954 -mgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~ 994 (1260)
+...|+.++-+.+...|++.++.-..+-+..++. ++||..
T Consensus 122 ~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~ 162 (207)
T PRK13834 122 EATLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPM 162 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCe
Confidence 5578999999999999999999776666666554 788765
No 139
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=47.66 E-value=1.5e+02 Score=35.98 Aligned_cols=132 Identities=15% Similarity=0.269 Sum_probs=83.6
Q ss_pred cccccCceeeecccCCCCCCcccCCCCcccccchhhhhhhhhhcccccccccCCC--CCchhhHHHhhcCCCCCcccccc
Q 000839 835 HELEAGLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRS--GINLIHNVLYNSGSNFNRLNYSG 912 (1260)
Q Consensus 835 ~eLEsg~SWsLLrr~d~dsdvs~~gi~q~vEcnSKLAvALtIm~ECFdPIiD~rS--GrDLIpdmVYn~GSnFkRLnfrG 912 (1260)
-.+-.+|.|.-+-..+.. .|..--+.+.|- ++-|..+ -.|.++..+- +-|..-++.-
T Consensus 75 ~~lp~gf~W~tldv~~~~----------------~l~el~~lL~en--yVEd~~~m~rf~Ys~eFl~---Wal~~pg~~~ 133 (421)
T KOG2779|consen 75 YSLPTGFRWETLDVSDFK----------------DLEELYNLLNEN--YVEDDDSMFRFDYSPEFLK---WALQPPGWKK 133 (421)
T ss_pred ccCCCCceeeccCCccHh----------------HHHHHHhhcccC--CCCccccchhhhccHHHHH---hhhcCCCCcc
Confidence 356678888876543221 122222344443 2323222 2355555542 2244555666
Q ss_pred cEEEEEeeCC--eEEE-----EEEEEEecC--ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCcc------EEEec
Q 000839 913 FYTAILERGD--EIIS-----AASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVE------KLIIP 977 (1260)
Q Consensus 913 FYt~VLe~~~--eVVs-----aAslRV~G~--~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe------~Lvlp 977 (1260)
-|.+.+.... .+|+ -+.|||.+. .+|||-|+-++-.-|.+++.=.|+.+|-+...--||- -++||
T Consensus 134 ~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp 213 (421)
T KOG2779|consen 134 EWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLP 213 (421)
T ss_pred ceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeec
Confidence 7888777655 7776 357999998 8899999999999999999999999998765444442 24566
Q ss_pred chhhHHHHhH
Q 000839 978 AIAELMHTWT 987 (1260)
Q Consensus 978 A~~ea~~~Wt 987 (1260)
+.-..-.-|.
T Consensus 214 ~PVstcRY~H 223 (421)
T KOG2779|consen 214 KPVSTCRYWH 223 (421)
T ss_pred cccchhhhhh
Confidence 6655556665
No 140
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=47.12 E-value=19 Score=47.26 Aligned_cols=49 Identities=35% Similarity=0.946 Sum_probs=39.6
Q ss_pred CcccccccCCCC--ceeeCCCCCccCCCcCCCC--CCCCCCCCCCCccccccC
Q 000839 718 DDTCGICGDGGD--LICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCKFCG 766 (1260)
Q Consensus 718 dD~C~VCgdgGd--LLcCD~CpraFH~~CL~~~--~vPeGdW~Cp~C~C~~CG 766 (1260)
...|..|..+.. ++.|+.|...||.+|+.++ .++.++|.|+.|....|-
T Consensus 155 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (904)
T KOG1246|consen 155 YPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPES 207 (904)
T ss_pred chhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccC
Confidence 457888986653 4499999999999999975 588999999999866454
No 141
>PLN03239 histone acetyltransferase; Provisional
Probab=47.10 E-value=23 Score=42.12 Aligned_cols=29 Identities=21% Similarity=0.049 Sum_probs=23.3
Q ss_pred EeeeeeeecccccCChhHHHHHHHHHHHh
Q 000839 939 EMPFIGTRHIYRRQGMCRRLFCALESALC 967 (1260)
Q Consensus 939 EmPlvAT~~~yRrQGmgR~Lv~aIE~~L~ 967 (1260)
-|--|-|.|.|||+|+|+.|++--=++.+
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr 243 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSK 243 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhh
Confidence 37788999999999999999976544433
No 142
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=46.87 E-value=9.3 Score=40.47 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=18.8
Q ss_pred hhcccchhcccccccccCCCcceeeCCcch
Q 000839 792 KYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1260)
Q Consensus 792 ~YHv~CL~~~d~~~~~~~~~~~WFCsk~Ck 821 (1260)
.||..||.+ |+...+.+.|+|+ .|.
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~Cp-~C~ 25 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWICP-FCE 25 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCCC-CCc
Confidence 499999985 4455677999996 554
No 143
>PRK00756 acyltransferase NodA; Provisional
Probab=46.53 E-value=28 Score=37.92 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=34.4
Q ss_pred ceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEE
Q 000839 936 QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1260)
Q Consensus 936 ~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lv 975 (1260)
=+||+=+.|++|+..|.|++..+ .++--.|++|||..-|
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 36999999999999999999877 6899999999997444
No 144
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=46.50 E-value=28 Score=35.95 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=38.5
Q ss_pred eecccccCChhHHHHHHHHHHHhhcCccEEEecch-hhHHHHhHhccCceeccHHHHHhhhccceeeecC
Q 000839 945 TRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-AELMHTWTRVFGFTSLEESLKQEMRSLNMLVFPG 1013 (1260)
Q Consensus 945 T~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~-~ea~~~Wt~kFGF~~v~~~~k~~l~~~~ll~F~G 1013 (1260)
|.+..||+|+|+.|++++.+.- .+....+-++-. +-++.+....+|.+..-+ ...|+++|+|
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~e-~~~p~~~a~DrPS~Kll~Fl~Khy~L~~~ip------Q~NNFVVf~~ 116 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQEE-NVSPHQLAIDRPSPKLLSFLKKHYGLQRYIP------QSNNFVVFEG 116 (120)
T ss_pred EEeceeccCchHHHHHHHHHHc-CCCcccceecCCcHHHHHHHHHhcCCCcCCC------CCccEEEehH
Confidence 6789999999999999987752 222333333332 234565665566544322 3457788875
No 145
>PTZ00064 histone acetyltransferase; Provisional
Probab=46.44 E-value=23 Score=43.81 Aligned_cols=56 Identities=21% Similarity=0.100 Sum_probs=33.4
Q ss_pred cccccEEEEEee---CCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHH
Q 000839 909 NYSGFYTAILER---GDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESA 965 (1260)
Q Consensus 909 nfrGFYt~VLe~---~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~ 965 (1260)
+.--||++. +. +-.+||-=|=-..-.+---|--|-|.|.|||+|||+.|++.==.+
T Consensus 354 dpFlFYVLt-E~D~~G~HiVGYFSKEK~S~~~nNLACILtLPpyQRKGYGklLIdfSYeL 412 (552)
T PTZ00064 354 EPFLFYIVT-EVDEEGCHIVGYFSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKL 412 (552)
T ss_pred cceEEEEEE-EecCCCcEEEEEecccccCcccCceEEEEecchhhhcchhhhhhhhhhhh
Confidence 334456543 33 335555333222211223467889999999999999999765444
No 146
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=46.44 E-value=17 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.1
Q ss_pred eeeeeeecccccCChhHHHHHH
Q 000839 940 MPFIGTRHIYRRQGMCRRLFCA 961 (1260)
Q Consensus 940 mPlvAT~~~yRrQGmgR~Lv~a 961 (1260)
|--|=|.|.|||+|||+.|++-
T Consensus 263 laCILtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred eeeeeecChhhhcccchhhhhh
Confidence 7789999999999999999874
No 147
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=45.58 E-value=19 Score=44.01 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=33.1
Q ss_pred cccccEEEEEe--eCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHH
Q 000839 909 NYSGFYTAILE--RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALES 964 (1260)
Q Consensus 909 nfrGFYt~VLe--~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~ 964 (1260)
+.--||++.-. .+-.|||-=|==-+-.+---|--|-|.|.||++|||+.|++--=+
T Consensus 276 ~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIltlP~yQrkGyG~~LI~~SYe 333 (450)
T PLN00104 276 DLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYE 333 (450)
T ss_pred cceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEecchhhhcchhheehhheeh
Confidence 33445654321 234666543322222222247788999999999999999875433
No 148
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=45.48 E-value=43 Score=39.97 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=41.8
Q ss_pred EEEEEEecCceeEeeeeeee-cccccCChhHHHHHHHHHHHhh-cCccEEEecchhhHHHHhHhccCceecc
Q 000839 927 AASIRFHGTQLAEMPFIGTR-HIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1260)
Q Consensus 927 aAslRV~G~~lAEmPlvAT~-~~yRrQGmgR~Lv~aIE~~L~~-LgVe~LvlpA~~ea~~~Wt~kFGF~~v~ 996 (1260)
+--|||+|. -+|+-+-. ..||+||+|.+||++.|+.++. .|-.++-+=+--.....|. ||||..--
T Consensus 479 vRELHVYGs---~vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~LdG 546 (554)
T KOG2535|consen 479 VRELHVYGS---VVPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELDG 546 (554)
T ss_pred heeeeecce---eeecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeecC
Confidence 344667773 23433332 3699999999999999999875 4445554333334444555 89987543
No 149
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=45.22 E-value=19 Score=46.09 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.0
Q ss_pred eEeeeeeeecccccCChhHHHHHHHHHHH
Q 000839 938 AEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1260)
Q Consensus 938 AEmPlvAT~~~yRrQGmgR~Lv~aIE~~L 966 (1260)
|+|--|||.|+|++-|||.+-|+-+.+.+
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 56667899999999999999888776643
No 150
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=42.73 E-value=10 Score=43.77 Aligned_cols=40 Identities=30% Similarity=0.651 Sum_probs=31.0
Q ss_pred eeeeeEecC------CcccCCCCceeeccceeeccCCc-ccCCceee
Q 000839 640 MLEGWITRD------GIHCGCCSKILTVSKFEIHAGSK-LRQPFQNI 679 (1260)
Q Consensus 640 ~L~G~It~d------GI~C~CC~kvfSpSeFEaHAGsk-~rqPy~nI 679 (1260)
-++|+.++- -|.|.|-...|+|.+|..|||.. ...|.++|
T Consensus 237 ~i~g~ly~y~~~~~v~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 237 RIEGFLYKYGKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred eeeEEEEEecCCCeEEEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 466644433 38999999999999999999985 56777666
No 151
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=42.59 E-value=47 Score=35.76 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=39.0
Q ss_pred eEeeeeeeecccccCChhHHHHHHHHHHHh-hcCccEEEecch---hhHHHHhHhccCceecc
Q 000839 938 AEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAI---AELMHTWTRVFGFTSLE 996 (1260)
Q Consensus 938 AEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~-~LgVe~LvlpA~---~ea~~~Wt~kFGF~~v~ 996 (1260)
+|+-+.---|..||+|+|+-.|.++..... .|++.++.+-.. ...+.+.. ||+|..+-
T Consensus 108 gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~~ 169 (185)
T KOG4135|consen 108 GEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQVF 169 (185)
T ss_pred eeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheeee
Confidence 444444556899999999999999888754 356666665552 33444555 78887653
No 152
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.58 E-value=14 Score=36.90 Aligned_cols=35 Identities=34% Similarity=1.009 Sum_probs=22.0
Q ss_pred CCCccCCCcCCC-------CCCCCCCCCCCCcc----ccccCCCCC
Q 000839 736 CPSTFHQSCLDI-------QMLPPGDWHCPNCT----CKFCGLAGE 770 (1260)
Q Consensus 736 CpraFH~~CL~~-------~~vPeGdW~Cp~C~----C~~CG~~~~ 770 (1260)
|...|=..||-- +.+.+..|.||.|+ |.+|....+
T Consensus 36 ~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g 81 (105)
T PF10497_consen 36 CRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRG 81 (105)
T ss_pred CcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCC
Confidence 355555556531 12456789999987 777765544
No 153
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=40.20 E-value=58 Score=34.47 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=42.0
Q ss_pred cccccCChhHHHHHHHHHHHhhcCccEEEecc----hhhHHHHhHhccCceeccH
Q 000839 947 HIYRRQGMCRRLFCALESALCSLKVEKLIIPA----IAELMHTWTRVFGFTSLEE 997 (1260)
Q Consensus 947 ~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA----~~ea~~~Wt~kFGF~~v~~ 997 (1260)
..-||.|++|+|..-+-..+..-|-.+|+|-. ..++.......|||+++-.
T Consensus 94 ~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~ 148 (167)
T COG3818 94 SRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQ 148 (167)
T ss_pred ecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccc
Confidence 34689999999999999999999999988743 2356667777999999876
No 154
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=39.30 E-value=16 Score=45.76 Aligned_cols=35 Identities=37% Similarity=0.860 Sum_probs=25.0
Q ss_pred CcccccccCCCCceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000839 718 DDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 718 dD~C~VCgdgGdLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
-+.|..|+..|..+-|+.|+.-++ +..+..|+.|.
T Consensus 68 ~~~c~~c~G~gkv~~c~~cG~~~~---------~~~~~lc~~c~ 102 (715)
T COG1107 68 YDTCPECGGTGKVLTCDICGDIIV---------PWEEGLCPECR 102 (715)
T ss_pred EeecccCCCceeEEeeccccceec---------CcccccChhHh
Confidence 467888888888888888887665 22223688775
No 155
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=39.16 E-value=13 Score=34.30 Aligned_cols=28 Identities=39% Similarity=0.965 Sum_probs=11.6
Q ss_pred cccccccC----CCC--ceeeC--CCCCccCCCcCC
Q 000839 719 DTCGICGD----GGD--LICCD--GCPSTFHQSCLD 746 (1260)
Q Consensus 719 D~C~VCgd----gGd--LLcCD--~CpraFH~~CL~ 746 (1260)
..|.||.. .++ .+.|+ .|...||..||-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 46889964 222 57898 899999999995
No 156
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=38.40 E-value=23 Score=43.69 Aligned_cols=30 Identities=27% Similarity=0.764 Sum_probs=21.0
Q ss_pred CceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000839 729 DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 729 dLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
+|.+|..|..-=...|+..+ -..||||.|.
T Consensus 4 ~L~fC~~C~~irc~~c~~~E---i~~~yCp~CL 33 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE---IDSYYCPNCL 33 (483)
T ss_pred cceecccccccCChhhcccc---cceeECcccc
Confidence 57888888766666676543 2469999885
No 157
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=38.25 E-value=14 Score=35.91 Aligned_cols=30 Identities=40% Similarity=1.005 Sum_probs=25.8
Q ss_pred CcccccccC-CCCceeeCC--CCCccCCCcCCC
Q 000839 718 DDTCGICGD-GGDLICCDG--CPSTFHQSCLDI 747 (1260)
Q Consensus 718 dD~C~VCgd-gGdLLcCD~--CpraFH~~CL~~ 747 (1260)
...|.+|+. .|-.+-|.. |..+||+.|.-.
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 568999998 578999997 999999999753
No 158
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=37.19 E-value=19 Score=45.25 Aligned_cols=33 Identities=24% Similarity=0.639 Sum_probs=24.4
Q ss_pred CceeeCCcchhhhcccchhcccccccccCCCcceeeCCcchhHHH
Q 000839 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1260)
Q Consensus 781 ~~LL~CdQCeR~YHv~CL~~~d~~~~~~~~~~~WFCsk~CkeI~e 825 (1260)
.....|..|...||..|+... -.||+.|..+..
T Consensus 529 ~~~~rC~~C~avfH~~C~~r~------------s~~CPrC~R~q~ 561 (580)
T KOG1829|consen 529 RNTRRCSTCLAVFHKKCLRRK------------SPCCPRCERRQK 561 (580)
T ss_pred ccceeHHHHHHHHHHHHHhcc------------CCCCCchHHHHH
Confidence 346899999999999999842 123568877654
No 159
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=36.71 E-value=24 Score=41.39 Aligned_cols=22 Identities=36% Similarity=0.880 Sum_probs=18.8
Q ss_pred CCceeeCCcchhhhc-ccchhcc
Q 000839 780 TSALLPCAMCEKKYH-KLCMQEM 801 (1260)
Q Consensus 780 ~~~LL~CdQCeR~YH-v~CL~~~ 801 (1260)
...|++|..|+-||| ..|++..
T Consensus 145 e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 145 EGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred cceeeeEEeccchhcccccCccc
Confidence 357999999999999 8998753
No 160
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=36.56 E-value=22 Score=38.54 Aligned_cols=34 Identities=35% Similarity=0.903 Sum_probs=25.3
Q ss_pred ccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhcc
Q 000839 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEM 801 (1260)
Q Consensus 762 C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~~ 801 (1260)
|..|+..+.+. ..+.|++|.-|.-.||..||.+.
T Consensus 2 C~~C~~~g~~~------~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGDDR------NKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCCCc------cCCCeEEcCccChHHHhhhcCCc
Confidence 55676554432 34579999999999999999853
No 161
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=36.08 E-value=25 Score=38.45 Aligned_cols=37 Identities=35% Similarity=0.907 Sum_probs=28.1
Q ss_pred CcccccccCCC--------CceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000839 718 DDTCGICGDGG--------DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 718 dD~C~VCgdgG--------dLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
..+|.+|.+.+ ....|..|...||..|... =.||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcH
Confidence 35899998643 4688999999999999963 1277773
No 162
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=34.86 E-value=12 Score=36.56 Aligned_cols=37 Identities=30% Similarity=0.686 Sum_probs=22.4
Q ss_pred ccCCCC---ceeeCCCCCccCCCcCCCCC-CCCCCCCCCCcc
Q 000839 724 CGDGGD---LICCDGCPSTFHQSCLDIQM-LPPGDWHCPNCT 761 (1260)
Q Consensus 724 CgdgGd---LLcCD~CpraFH~~CL~~~~-vPeGdW~Cp~C~ 761 (1260)
|..+|+ ++++ .|...||..|+.... -+...=.||.|+
T Consensus 38 Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR 78 (85)
T PF12861_consen 38 CKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCR 78 (85)
T ss_pred ccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcC
Confidence 334554 4444 499999999986421 122234788776
No 163
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=33.97 E-value=30 Score=43.16 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=37.5
Q ss_pred CCcccccccCCCCceeeCCCCCccCCCcCCCC-CCCC--CCCCCCCcc
Q 000839 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ-MLPP--GDWHCPNCT 761 (1260)
Q Consensus 717 ndD~C~VCgdgGdLLcCD~CpraFH~~CL~~~-~vPe--GdW~Cp~C~ 761 (1260)
.+-.|+-|.-+|..+.|+.|-+.||..|+.+. ..+. ..|.|+.|.
T Consensus 59 ~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 59 IDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 35689999999999999999999999999874 2333 569999775
No 164
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=33.70 E-value=46 Score=41.89 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=32.4
Q ss_pred eeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhh----HHHHhHhccCceeccHHH
Q 000839 942 FIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE----LMHTWTRVFGFTSLEESL 999 (1260)
Q Consensus 942 lvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~e----a~~~Wt~kFGF~~v~~~~ 999 (1260)
.+-+-|-|.+-++-+.-...+|..-+.-...-.+-|--.+ -...|..++-|.++..+.
T Consensus 428 iyrKPPiYkq~~~~~~~~~s~eDi~k~sk~p~~~~pdpas~~~~e~~~w~~~ps~~V~~~~~ 489 (670)
T KOG1044|consen 428 IYRKPPIYKQHAILRADSKSSEDIIKFSKFPAAQAPDPASTPEIETDHWPGKPSFAVPGPEM 489 (670)
T ss_pred cccCCCcccchhhhhcccccccchhhhhcCCcccCCCCCCCCcccccCCCCCCcccccCchh
Confidence 4445566666666666666666655555444444333222 335677777777765433
No 165
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=32.19 E-value=1.8e+02 Score=30.16 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=50.4
Q ss_pred EEEEEeeCCeEEEEEEEEEecCceeEeeeeeeecccccCChhHHHHHHHHHHHhhcCccEEE
Q 000839 914 YTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1260)
Q Consensus 914 Yt~VLe~~~eVVsaAslRV~G~~lAEmPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~Lv 975 (1260)
+.+-+..+|++|+||.+-+...-+.-|-++= .|+|....+|...+-.-.+.++.+|.+.+.
T Consensus 40 ~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 40 YHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 4444458999999999998877766665553 688999999999888888899999999998
No 166
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.47 E-value=30 Score=45.94 Aligned_cols=34 Identities=24% Similarity=0.607 Sum_probs=25.7
Q ss_pred CCcccccccCCCCceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000839 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 717 ndD~C~VCgdgGdLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
....|..|+...-...|..|+.. +...|+||.|.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~-----------Te~i~fCP~CG 658 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTH-----------TEPVYRCPRCG 658 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCC-----------CCcceeCcccc
Confidence 45689999988777788888764 34558888885
No 167
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=30.87 E-value=24 Score=33.00 Aligned_cols=30 Identities=33% Similarity=0.808 Sum_probs=25.9
Q ss_pred CcccccccCC-CCceeeCC--CCCccCCCcCCC
Q 000839 718 DDTCGICGDG-GDLICCDG--CPSTFHQSCLDI 747 (1260)
Q Consensus 718 dD~C~VCgdg-GdLLcCD~--CpraFH~~CL~~ 747 (1260)
...|.+|+.. |-.+-|.. |...||..|.-.
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 4589999998 98898985 999999999854
No 168
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=30.29 E-value=41 Score=31.75 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.3
Q ss_pred eeeeeeecccccCChhHHHHHHHHHHH
Q 000839 940 MPFIGTRHIYRRQGMCRRLFCALESAL 966 (1260)
Q Consensus 940 mPlvAT~~~yRrQGmgR~Lv~aIE~~L 966 (1260)
|.-|=|.+.+||||+.++|++++-...
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 344557899999999999999998763
No 169
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=29.92 E-value=17 Score=40.61 Aligned_cols=63 Identities=27% Similarity=0.585 Sum_probs=35.8
Q ss_pred CCceeeCCCCCcc--------CCCcCCCCCCCCCCCCCCCccccccCCCCCCCCC----CCCCCCCceeeCCcchhhhcc
Q 000839 728 GDLICCDGCPSTF--------HQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAE----GDDTTTSALLPCAMCEKKYHK 795 (1260)
Q Consensus 728 GdLLcCD~CpraF--------H~~CL~~~~vPeGdW~Cp~C~C~~CG~~~~ds~e----ed~~S~~~LL~CdQCeR~YHv 795 (1260)
++...|+.|.++| |+.|...- ....|.+||+.-.+.-. ..+.....-..|.+|+++|-.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~v---------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq 185 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDV---------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ 185 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHH---------HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence 4555666666665 55565421 11236678765433110 011123345899999999999
Q ss_pred cchh
Q 000839 796 LCMQ 799 (1260)
Q Consensus 796 ~CL~ 799 (1260)
.|.-
T Consensus 186 rcsl 189 (267)
T KOG3576|consen 186 RCSL 189 (267)
T ss_pred hccH
Confidence 8853
No 170
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=28.99 E-value=72 Score=30.33 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=28.0
Q ss_pred HhcCeeeeeccCCC---CCcccceeeCCCCceeeehHH
Q 000839 404 VEAGWTIDYRPRKN---RDYLDAVYINPTGTAYWSIIK 438 (1260)
Q Consensus 404 ~~agwtid~rpr~~---r~y~d~vy~~p~g~~~wsi~k 438 (1260)
+-.||+=..+.|+. +-=.|.+|++|.|+..=|.-.
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~e 45 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSE 45 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHH
Confidence 56799999988873 456899999999998766544
No 171
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=28.20 E-value=36 Score=25.40 Aligned_cols=9 Identities=78% Similarity=2.169 Sum_probs=7.4
Q ss_pred CCCCCCCcc
Q 000839 753 GDWHCPNCT 761 (1260)
Q Consensus 753 GdW~Cp~C~ 761 (1260)
|+|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 579999884
No 172
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.09 E-value=31 Score=43.35 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=13.5
Q ss_pred eCCcchhhhcccchhc
Q 000839 785 PCAMCEKKYHKLCMQE 800 (1260)
Q Consensus 785 ~CdQCeR~YHv~CL~~ 800 (1260)
.|+.|++.|++.++..
T Consensus 157 ~Ce~Cg~~~~P~~l~~ 172 (558)
T COG0143 157 QCENCGRTLDPTELIN 172 (558)
T ss_pred hhhhccCcCCchhcCC
Confidence 6999999999988653
No 173
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=26.31 E-value=4.8 Score=33.24 Aligned_cols=40 Identities=33% Similarity=0.806 Sum_probs=24.3
Q ss_pred cccccccCC---C-CceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000839 719 DTCGICGDG---G-DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 719 D~C~VCgdg---G-dLLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
|.|.||.+. + .++... |...||..|+.....- ...||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh--CCcCCccC
Confidence 468889752 3 344444 9999999998642111 13777774
No 174
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=25.42 E-value=3.9e+02 Score=29.04 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCccc-ccccEEEEEeeCCeEEEEEEEEE---------------------ecCceeEeeeeeeeccccc------CChhH
Q 000839 905 FNRLN-YSGFYTAILERGDEIISAASIRF---------------------HGTQLAEMPFIGTRHIYRR------QGMCR 956 (1260)
Q Consensus 905 FkRLn-frGFYt~VLe~~~eVVsaAslRV---------------------~G~~lAEmPlvAT~~~yRr------QGmgR 956 (1260)
+..+| ..-.|.+++.. |+|+|++-|.- .+.++-|+==|++.++..+ .-+..
T Consensus 37 ~DqyD~~~~~ylv~~~~-g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~ 115 (182)
T PF00765_consen 37 IDQYDDPDAVYLVALDD-GRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTM 115 (182)
T ss_dssp --TTGCTT-EEEEEEET-TEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHH
T ss_pred eeecCCCCCeEEEEEEC-CEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHH
Confidence 34444 23457777654 99998875531 1136778877888777432 23678
Q ss_pred HHHHHHHHHHhhcCccEEEecchhhHHHHhHhccCceec
Q 000839 957 RLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1260)
Q Consensus 957 ~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~kFGF~~v 995 (1260)
.|+.++-+.+.+.|++.++.-+..-...++. ++||...
T Consensus 116 ~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~~ 153 (182)
T PF00765_consen 116 ELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPVR 153 (182)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCceE
Confidence 9999999999999999999877777766666 7888754
No 175
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=25.00 E-value=34 Score=40.80 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.1
Q ss_pred eEeeeeeeecccccCChhHHHHH
Q 000839 938 AEMPFIGTRHIYRRQGMCRRLFC 960 (1260)
Q Consensus 938 AEmPlvAT~~~yRrQGmgR~Lv~ 960 (1260)
--|--|-|.|.|||+|||..|++
T Consensus 263 yNLaCILtLP~yQRrGYG~lLId 285 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLID 285 (395)
T ss_pred CceEEEEecChhHhcccceEeee
Confidence 45778899999999999999975
No 176
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=24.95 E-value=1.6e+02 Score=29.61 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=48.4
Q ss_pred eeeeeeecccccCChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhHhc----cCceeccHHHHHhhhccceee
Q 000839 940 MPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRV----FGFTSLEESLKQEMRSLNMLV 1010 (1260)
Q Consensus 940 mPlvAT~~~yRrQGmgR~Lv~aIE~~L~~LgVe~LvlpA~~ea~~~Wt~k----FGF~~v~~~~k~~l~~~~ll~ 1010 (1260)
|..+.+.-..|..|..+.|++++.+.|...|++.=++.-..-.++++... +.+..--.+....+.....++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 56677777888999999999999999999999887776665445555422 233333334566666655433
No 177
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=24.68 E-value=41 Score=39.96 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=39.8
Q ss_pred ceeeCCcchhhhcccc--hhcccccccccCCCcceeeCCcchhHHHHHHhHhccccccccCceeee
Q 000839 782 ALLPCAMCEKKYHKLC--MQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSL 845 (1260)
Q Consensus 782 ~LL~CdQCeR~YHv~C--L~~~d~~~~~~~~~~~WFCsk~CkeI~e~LQkLLGvk~eLEsg~SWsL 845 (1260)
.+..|+.|..+||..| +.- ..........|+| ..|.....+++..-+..-.+...+.|.+
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSESDGLSCVCRQDDSELL 135 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhhhccceeeccccccccc
Confidence 4789999999999999 542 2223345578999 8999888777655333333333444443
No 178
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.31 E-value=24 Score=44.38 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=24.1
Q ss_pred cCCcccCCCCceeeccceeeccCCcccCCceeeec
Q 000839 647 RDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYL 681 (1260)
Q Consensus 647 ~dGI~C~CC~kvfSpSeFEaHAGsk~rqPy~nIyL 681 (1260)
.+-+.|+.|...+....|+.|... .+|.+|.+
T Consensus 405 ~~~V~C~NC~~~i~l~~l~lHe~~---C~r~~V~C 436 (567)
T PLN03086 405 VDTVECRNCKHYIPSRSIALHEAY---CSRHNVVC 436 (567)
T ss_pred CCeEECCCCCCccchhHHHHHHhh---CCCcceeC
Confidence 345689999999999999999753 45566544
No 179
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=24.02 E-value=87 Score=29.09 Aligned_cols=28 Identities=11% Similarity=0.521 Sum_probs=24.3
Q ss_pred eCCeEEEEEEEEEecCceeEeeeeeeec
Q 000839 920 RGDEIISAASIRFHGTQLAEMPFIGTRH 947 (1260)
Q Consensus 920 ~~~eVVsaAslRV~G~~lAEmPlvAT~~ 947 (1260)
.-|++||.+.+.+-|..++++|++|...
T Consensus 61 ~kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 61 KKGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp GTTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred cCCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 4589999999998899999999999764
No 180
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=22.91 E-value=42 Score=31.41 Aligned_cols=30 Identities=27% Similarity=0.824 Sum_probs=22.0
Q ss_pred ccccCCCCCCCCCCCCCCCCceeeCCc--chhhhcccchhccc
Q 000839 762 CKFCGLAGEDDAEGDDTTTSALLPCAM--CEKKYHKLCMQEMD 802 (1260)
Q Consensus 762 C~~CG~~~~ds~eed~~S~~~LL~CdQ--CeR~YHv~CL~~~d 802 (1260)
|.+|+...+ ..+.|.. |.+.||+.|....+
T Consensus 39 C~~C~~~~G-----------a~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 39 CSICKKKGG-----------ACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CcCCCCCCC-----------eEEEEeCCCCCcEEChHHHccCC
Confidence 667776622 3688865 99999999987643
No 181
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=22.25 E-value=30 Score=26.93 Aligned_cols=10 Identities=70% Similarity=1.982 Sum_probs=8.4
Q ss_pred CCCCCCCCcc
Q 000839 752 PGDWHCPNCT 761 (1260)
Q Consensus 752 eGdW~Cp~C~ 761 (1260)
.|+|.|+.|.
T Consensus 2 ~g~W~C~~C~ 11 (30)
T PF00641_consen 2 EGDWKCPSCT 11 (30)
T ss_dssp SSSEEETTTT
T ss_pred CcCccCCCCc
Confidence 5789999886
No 182
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.17 E-value=61 Score=41.57 Aligned_cols=43 Identities=26% Similarity=0.711 Sum_probs=0.0
Q ss_pred ceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc-------ccccCCCCCCCCCCCCCCCCceeeCCcchhh
Q 000839 730 LICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT-------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKK 792 (1260)
Q Consensus 730 LLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~-------C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~ 792 (1260)
|+.|..|... +|.+.-||+.|- |..||..-.... -+|..|+..
T Consensus 1 M~~Cp~Cg~~----------n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~----------~fC~~CG~~ 50 (645)
T PRK14559 1 MLICPQCQFE----------NPNNNRFCQKCGTSLTHKPCPQCGTEVPVDE----------AHCPNCGAE 50 (645)
T ss_pred CCcCCCCCCc----------CCCCCccccccCCCCCCCcCCCCCCCCCccc----------ccccccCCc
No 183
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.88 E-value=42 Score=42.70 Aligned_cols=77 Identities=27% Similarity=0.611 Sum_probs=48.3
Q ss_pred CcccccccCC-CCceeeCCCCCccCCCcCCCCC---------------CCCCCCCCCCcc---ccccCCCCCCCCCCCCC
Q 000839 718 DDTCGICGDG-GDLICCDGCPSTFHQSCLDIQM---------------LPPGDWHCPNCT---CKFCGLAGEDDAEGDDT 778 (1260)
Q Consensus 718 dD~C~VCgdg-GdLLcCD~CpraFH~~CL~~~~---------------vPeGdW~Cp~C~---C~~CG~~~~ds~eed~~ 778 (1260)
...|.+|+.+ ...++|+.|+...|..|+.... +-...|.+-.+. |..|..... ..
T Consensus 116 ~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~------~~ 189 (634)
T KOG1169|consen 116 PKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKSVK------AD 189 (634)
T ss_pred cccccchhhcccCceeeccccchHHHHHHhhcCcccccccccccccceeecCcccccccCCccchhhhcccc------cc
Confidence 3466666665 5689999999999999986321 112345555443 222322111 11
Q ss_pred CCCceeeCCcchhhhcccchhc
Q 000839 779 TTSALLPCAMCEKKYHKLCMQE 800 (1260)
Q Consensus 779 S~~~LL~CdQCeR~YHv~CL~~ 800 (1260)
.......|..|-+.+|..|...
T Consensus 190 ~~~~~~~c~~~~~~~h~~~~~~ 211 (634)
T KOG1169|consen 190 QGLTGPRCGWCQIRVHDKCKSE 211 (634)
T ss_pred ccccccccceeeeeeecchHHH
Confidence 2234678999999999999874
No 184
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.73 E-value=48 Score=42.91 Aligned_cols=42 Identities=24% Similarity=0.635 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCcc------ccccCCCCCCCCCCCCCCCCceeeCCcchhhhcccchhc
Q 000839 749 MLPPGDWHCPNCT------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1260)
Q Consensus 749 ~vPeGdW~Cp~C~------C~~CG~~~~ds~eed~~S~~~LL~CdQCeR~YHv~CL~~ 800 (1260)
++-.+.|+|..|. |.+|+..-. +..+.|.+|+..=|..|+..
T Consensus 763 ~~~~~~~~c~rc~s~a~~~CtVC~~vi~----------G~~~~c~~C~H~gH~sh~~s 810 (839)
T KOG0269|consen 763 MVLTKLWQCDRCESRASAKCTVCDLVIR----------GVDVWCQVCGHGGHDSHLKS 810 (839)
T ss_pred cccccceeechHHHHhhcCceeecceee----------eeEeecccccccccHHHHHH
Confidence 3444559999886 778865432 34689999999999999975
No 185
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.32 E-value=34 Score=39.63 Aligned_cols=48 Identities=25% Similarity=0.514 Sum_probs=28.8
Q ss_pred cccccCCcccC-CCCCCCCCcccccccCCC------C----ceeeCCCCCccCCCcCCC
Q 000839 700 ESESIGFESVD-VDGDDPNDDTCGICGDGG------D----LICCDGCPSTFHQSCLDI 747 (1260)
Q Consensus 700 ~sEk~G~~~V~-~dgdd~ndD~C~VCgdgG------d----LLcCD~CpraFH~~CL~~ 747 (1260)
.+...|+...+ ......+|..|.+|+..= + -+.==.|...||.+|..-
T Consensus 205 mAs~iGfYs~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrG 263 (328)
T KOG1734|consen 205 MASTIGFYSPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRG 263 (328)
T ss_pred HHHHhcccCCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhh
Confidence 34445664432 223456788999998521 1 111124899999999864
No 186
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=21.20 E-value=67 Score=38.19 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=42.9
Q ss_pred CceeeCCCCCccCCCc--CCCCC---CCCCCCCCCCccccccCCCCCCCC----C---CCCCCCCceeeCCcchhhhccc
Q 000839 729 DLICCDGCPSTFHQSC--LDIQM---LPPGDWHCPNCTCKFCGLAGEDDA----E---GDDTTTSALLPCAMCEKKYHKL 796 (1260)
Q Consensus 729 dLLcCD~CpraFH~~C--L~~~~---vPeGdW~Cp~C~C~~CG~~~~ds~----e---ed~~S~~~LL~CdQCeR~YHv~ 796 (1260)
.++-|+.|...||..| ++++. .+...|+|..|.+..=+....+.. . ....+...-+-+..|..++|..
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~~~~~~~l~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~ 153 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDGMSESDGLSCVCRQDDSELLSPSFYFGKRGCQFWVKLQ 153 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhhhhhhhhccceeecccccccccccccccCCccccccccch
Confidence 6789999999999999 88752 345679999998554332221100 0 0001112224555666677777
Q ss_pred chh
Q 000839 797 CMQ 799 (1260)
Q Consensus 797 CL~ 799 (1260)
|+.
T Consensus 154 ~~~ 156 (345)
T KOG1632|consen 154 KLG 156 (345)
T ss_pred hhh
Confidence 765
No 187
>PLN02400 cellulose synthase
Probab=20.55 E-value=1e+02 Score=41.74 Aligned_cols=45 Identities=33% Similarity=0.922 Sum_probs=34.8
Q ss_pred CCCcccccccCC------CC-ceeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000839 716 PNDDTCGICGDG------GD-LICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1260)
Q Consensus 716 ~ndD~C~VCgdg------Gd-LLcCD~CpraFH~~CL~~~~vPeGdW~Cp~C~ 761 (1260)
.+..+|.||+|. |+ .+-|..|.-..--.|+..+ .-+|.=.||+|+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYE-RkeGnq~CPQCk 85 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYE-RKDGTQCCPQCK 85 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhee-cccCCccCcccC
Confidence 356699999973 33 8899999877777787543 677888999997
No 188
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=20.25 E-value=80 Score=33.76 Aligned_cols=24 Identities=42% Similarity=0.872 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCeeeeeccCCCCCcccceeeCCCCceee
Q 000839 395 LRERIRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYW 434 (1260)
Q Consensus 395 ~r~~i~~~l~~agwtid~rpr~~r~y~d~vy~~p~g~~~w 434 (1260)
+-|-+|.+-.+|||+|+ |+||+|=
T Consensus 47 ~NeVLkALc~eAGw~Ve----------------~DGTtyr 70 (150)
T PF05687_consen 47 NNEVLKALCREAGWTVE----------------PDGTTYR 70 (150)
T ss_pred HHHHHHHHHHhCCEEEc----------------cCCCeec
Confidence 34556777788999864 8999986
Done!