Query 000839
Match_columns 1260
No_of_seqs 357 out of 1665
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 16:18:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000839.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_610-613//hhsearch_pdb/000839hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 127.9 7.9 93 715-821 4-102 (111)
2 3ask_A E3 ubiquitin-protein li 1.0 1 1 127.8 6.1 134 609-761 66-223 (226)
3 4gne_A Histone-lysine N-methyl 1.0 1 1 125.7 6.3 91 712-819 9-101 (107)
4 2kwj_A Zinc finger protein DPF 1.0 1 1 125.6 4.0 92 719-824 2-109 (114)
5 3v43_A Histone acetyltransfera 1.0 1 1 119.7 3.1 92 717-821 4-110 (112)
6 2lbm_A Transcriptional regulat 1.0 1 1 107.2 1.1 99 642-762 9-116 (142)
7 3u5n_A E3 ubiquitin-protein li 1.0 1 1 105.1 4.1 50 713-762 2-53 (207)
8 3o36_A Transcription intermedi 1.0 1 1 102.1 4.7 48 715-762 1-50 (184)
9 2ro1_A Transcription intermedi 1.0 1 1 96.1 4.4 47 717-763 1-49 (189)
10 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 95.8 5.6 50 713-762 20-71 (88)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=127.94 Aligned_cols=93 Identities=35% Similarity=0.911 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCCCCC---EEECCCCCCCCCCCCCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 8877633310578971---6627999956899688888--999997898753-112488899998898889874120776
Q 000839 715 DPNDDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCAM 788 (1260)
Q Consensus 715 d~ndD~C~VCgdGGdL---LcCD~CpsafH~~CL~l~~--VP~gdW~Cp~C~-C~iCG~~~~ds~eed~~S~~~Ll~CdQ 788 (1260)
+.+++.|.+|+++|++ |+|+.|+++||+.||+++. ++.+.|+|+.|. |.+|+....+ ..|+.|++
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ll~Cd~ 74 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGED---------SKMLVCDT 74 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCC---------TTEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCEEECCC
T ss_conf 899799957899888758859999997739677088655445668658767826234765898---------77658999
Q ss_pred CHHHHCCCCHHCCCCCCCCCCCCCCEEECCCCH
Q ss_conf 424310100000122323669973605177456
Q 000839 789 CEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1260)
Q Consensus 789 CeR~YHv~CL~~~d~i~~e~~~~~~WFCsk~Ck 821 (1260)
|.++||..|+.+ +....+.+.|||. .|.
T Consensus 75 C~~~yH~~Cl~p----pl~~~P~g~W~C~-~C~ 102 (111)
T 2ysm_A 75 CDKGYHTFCLQP----VMKSVPTNGWKCK-NCR 102 (111)
T ss_dssp SCCEEEGGGSSS----CCSSCCSSCCCCH-HHH
T ss_pred CCCHHHHHHCCC----CCCCCCCCCCCCC-CCC
T ss_conf 980886986587----6566889882992-882
No 2
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=127.83 Aligned_cols=134 Identities=27% Similarity=0.502 Sum_probs=85.5
Q ss_pred CCCHHHHHHHCCCCEECCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCCHH
Q ss_conf 87304454410491000454987404465114453673399101788844514100122488545775025406984311
Q 000839 609 GKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLL 688 (1260)
Q Consensus 609 ~krTVLSwLID~G~V~~~~kV~Y~n~~~~~vlLeG~It~dGI~C~CC~kvfS~SeFE~HAG~k~rrPy~nIyL~dG~SLl 688 (1260)
+.|+.+.| ..+. ..++.|+|++-..+..+|++..+-| ....-..+.+.++++|+|+ |.+|.
T Consensus 66 rar~~~~~----~~l~-~g~~vm~nyn~~~~~~~G~~y~~~I-------------~~~~~~r~~~~~~a~i~l~-g~sl~ 126 (226)
T 3ask_A 66 RARTIIKW----QDLE-VGQVVMLNYNPDNPKERGFWYDAEI-------------SRKRETRTARELYANVVLG-DDSLN 126 (226)
T ss_dssp CCCCBCCG----GGCC-TTCEEEEEECTTSTTSCCEEEEEEE-------------EEEEECSSCEEEEEEEECS-SSEEE
T ss_pred CCCCCCCC----CCCC-CCCEEEEECCCCCCCCCCCEEEHHH-------------HHHHHCCCCCCEEEEEEEC-CCCCC
T ss_conf 30024780----0156-4729998346688553673542554-------------3134023312224688766-87543
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCC--------------CCC----CCCCCCCCCC---CCCCEEECCCCCCCCCCCCCC
Q ss_conf 3547631012212235986667789--------------888----7763331057---897166279999568996888
Q 000839 689 QCQIDAWNKLKESESIGFESVDVDG--------------DDP----NDDTCGICGD---GGDLICCDGCPSTFHQSCLDI 747 (1260)
Q Consensus 689 eCqI~awnkq~~sEk~G~~~V~~dg--------------dd~----ndD~C~VCgd---GGdLLcCD~CpsafH~~CL~l 747 (1260)
+|++.+......+|..+......++ ++. .+..|.+|+. ++.||+||+|+++||++||+|
T Consensus 127 ~c~i~f~~e~~~ie~~~~~~~~~~~~~~r~~~~~C~~c~~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~P 206 (226)
T 3ask_A 127 DCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDP 206 (226)
T ss_dssp EEEESCTTCCBCCCCSSSSCCCCSCCCCCCCSCCCTTTTTCTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--C
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCC
T ss_conf 41578731433211335553333463334578644323578677668888868899799987688389994100756788
Q ss_pred C--CCCCC-CCCCCCCC
Q ss_conf 8--89999-97898753
Q 000839 748 Q--MLPPG-DWHCPNCT 761 (1260)
Q Consensus 748 ~--~VP~g-dW~Cp~C~ 761 (1260)
| .+|.| +|+|+.|.
T Consensus 207 PL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 207 PLSSVPSEDEWYCPECR 223 (226)
T ss_dssp CCCSCCSSSCCCCGGGC
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 74569899887893874
No 3
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=125.67 Aligned_cols=91 Identities=31% Similarity=0.738 Sum_probs=77.0
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 89888776333105789716627--9999568996888889999978987531124888999988988898741207764
Q 000839 712 DGDDPNDDTCGICGDGGDLICCD--GCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMC 789 (1260)
Q Consensus 712 dgdd~ndD~C~VCgdGGdLLcCD--~CpsafH~~CL~l~~VP~gdW~Cp~C~C~iCG~~~~ds~eed~~S~~~Ll~CdQC 789 (1260)
++...++++|.+|+++|+||+|| .||++||+.||++..+|.|+|+||.|.|.+|+.... +.|..|
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~~-------------~~C~~C 75 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAV-------------SFCEFC 75 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBCC-------------EECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-------------CCCCCC
T ss_conf 8868897999847997847577999999265225186875799888898999881779898-------------674778
Q ss_pred HHHHCCCCHHCCCCCCCCCCCCCCEEECCC
Q ss_conf 243101000001223236699736051774
Q 000839 790 EKKYHKLCMQEMDALSDNLTGLVTSFCGRK 819 (1260)
Q Consensus 790 eR~YHv~CL~~~d~i~~e~~~~~~WFCsk~ 819 (1260)
..+||..|+.... ...+...|+|+.+
T Consensus 76 p~sfC~~c~~g~l----~~~~~~~~~c~~~ 101 (107)
T 4gne_A 76 PHSFCKDHEKGAL----VPSALEGRLCCSE 101 (107)
T ss_dssp SCEECTTTCTTSC----EECTTTTCEECTT
T ss_pred CCCHHHHCCCCCC----EECCCCCCEECCC
T ss_conf 7101121158731----1027889666677
No 4
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=125.55 Aligned_cols=92 Identities=28% Similarity=0.715 Sum_probs=73.6
Q ss_pred CCCCCCCC----------CCCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63331057----------8971662799995689968888-----899999789875-3112488899998898889874
Q 000839 719 DTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTSA 782 (1260)
Q Consensus 719 D~C~VCgd----------GGdLLcCD~CpsafH~~CL~l~-----~VP~gdW~Cp~C-~C~iCG~~~~ds~eed~~S~~~ 782 (1260)
+.|.+|.. +++||+|+.|+++||+.||+++ .+|.+.|+|+.| .|.+|+....+ ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ 72 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEND---------DQ 72 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTT---------TT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 808658897534446799999869298998323213878466431168775175662733756346888---------74
Q ss_pred EEECCCCHHHHCCCCHHCCCCCCCCCCCCCCEEECCCCHHHH
Q ss_conf 120776424310100000122323669973605177456579
Q 000839 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELS 824 (1260)
Q Consensus 783 Ll~CdQCeR~YHv~CL~~~d~i~~e~~~~~~WFCsk~Ck~I~ 824 (1260)
|+.|+.|+++||..|+.+ +....+.+.|||. .|...+
T Consensus 73 ll~Cd~C~~~yH~~Cl~p----pl~~~P~g~W~C~-~C~~~~ 109 (114)
T 2kwj_A 73 LLFCDDCDRGYHMYCLNP----PVAEPPEGSWSCH-LCWELL 109 (114)
T ss_dssp EEECSSSCCEEETTTSSS----CCSSCCSSCCCCH-HHHHHH
T ss_pred EEECCCCCCCCCCCCCCC----CCCCCCCCCEECC-CCCCHH
T ss_conf 577489894102504598----7467889781992-410344
No 5
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=119.67 Aligned_cols=92 Identities=26% Similarity=0.647 Sum_probs=72.6
Q ss_pred CCCCCCCCCC---------CCCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7763331057---------8971662799995689968888-----899999789875-311248889999889888987
Q 000839 717 NDDTCGICGD---------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTS 781 (1260)
Q Consensus 717 ndD~C~VCgd---------GGdLLcCD~CpsafH~~CL~l~-----~VP~gdW~Cp~C-~C~iCG~~~~ds~eed~~S~~ 781 (1260)
+..+|.+|.. +++||.|++|+++||++||++. .++.+.|+|+.| .|.+|+..+.+ ..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~--------~~ 75 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKN--------AD 75 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCT--------TC
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--------CC
T ss_conf 6761310389334276899111637534499889703538889998754246530117754466686888--------56
Q ss_pred CEEECCCCHHHHCCCCHHCCCCCCCCCCCCCCEEECCCCH
Q ss_conf 4120776424310100000122323669973605177456
Q 000839 782 ALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1260)
Q Consensus 782 ~Ll~CdQCeR~YHv~CL~~~d~i~~e~~~~~~WFCsk~Ck 821 (1260)
.|+.|+.|+++||..|+.+ +....+.+.|||. .|.
T Consensus 76 ~ll~Cd~C~~~yH~~Cl~p----~l~~~P~~~W~C~-~C~ 110 (112)
T 3v43_A 76 NMLFCDSCDRGFHMECCDP----PLTRMPKGMWICQ-ICR 110 (112)
T ss_dssp CCEECTTTCCEECGGGCSS----CCSSCCSSCCCCT-TTS
T ss_pred CEEECCCCCCEEECCCCCC----CCCCCCCCCEECC-CCC
T ss_conf 5687489989156635899----9898999885797-878
No 6
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=107.15 Aligned_cols=99 Identities=24% Similarity=0.552 Sum_probs=67.8
Q ss_pred EEEEECCCCCCCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53673399101788844514100122488545775025406984311354763101221223598666778988877633
Q 000839 642 EGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTC 721 (1260)
Q Consensus 642 eG~It~dGI~C~CC~kvfS~SeFE~HAG~k~rrPy~nIyL~dG~SLleCqI~awnkq~~sEk~G~~~V~~dgdd~ndD~C 721 (1260)
+|+. ++|.|.+|...+++.++ ......|+..+. ....|....... ++ ..+++.++++|
T Consensus 9 ~~~~--~~i~Ct~Cg~~~~~~q~----~~~~~HPll~v~-----~C~~C~~~y~~~-------~~----~~d~Dg~~d~C 66 (142)
T 2lbm_A 9 DGLH--GIVSCTACGQQVNHFQK----DSIYRHPSLQVL-----ICKNCFKYYMSD-------DI----SRDSDGMDEQC 66 (142)
T ss_dssp SSCC--CCCBCTTTCSBSTTTCS----SSEEEETTTTEE-----EEHHHHHHHHHS-------CC----CBCTTSCBCSC
T ss_pred CCCC--CCCEECCCCCCCCCCCC----CCHHCCCCCCCC-----CCHHHHHHHHCC-------CC----EECCCCCCCEE
T ss_conf 6775--79885489986565456----632129875664-----247789887237-------81----31688887800
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCC
Q ss_conf 3105789716627999956899688888---------9999978987531
Q 000839 722 GICGDGGDLICCDGCPSTFHQSCLDIQM---------LPPGDWHCPNCTC 762 (1260)
Q Consensus 722 ~VCgdGGdLLcCD~CpsafH~~CL~l~~---------VP~gdW~Cp~C~C 762 (1260)
.+|++||+|||||.||++||..|+.++. .|.++|+|+.|.+
T Consensus 67 ~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 67 RWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCCCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCC
T ss_conf 00399984786899897312745488887366654246899988212668
No 7
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=105.08 Aligned_cols=50 Identities=48% Similarity=1.242 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 988877633310578971662799995689968888--89999978987531
Q 000839 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1260)
Q Consensus 713 gdd~ndD~C~VCgdGGdLLcCD~CpsafH~~CL~l~--~VP~gdW~Cp~C~C 762 (1260)
.++.+++.|.+|+++|+||+||+|+++||+.||+|+ .+|.|+|+|+.|.-
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEEC
T ss_conf 8788889898889999367769999843871589998888998878684268
No 8
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=102.13 Aligned_cols=48 Identities=44% Similarity=1.203 Sum_probs=43.6
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 8877633310578971662799995689968888--89999978987531
Q 000839 715 DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1260)
Q Consensus 715 d~ndD~C~VCgdGGdLLcCD~CpsafH~~CL~l~--~VP~gdW~Cp~C~C 762 (1260)
++|++.|.+|+++|+||+||+|+++||+.|+.|+ .+|.++|+|+.|..
T Consensus 1 ~~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 1 SPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CCSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 99999541179999056629999530811368987879998878925568
No 9
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=96.07 Aligned_cols=47 Identities=30% Similarity=0.810 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 77633310578971662799995689968888--899999789875311
Q 000839 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCK 763 (1260)
Q Consensus 717 ndD~C~VCgdGGdLLcCD~CpsafH~~CL~l~--~VP~gdW~Cp~C~C~ 763 (1260)
+++.|.+|+++|+||+||+|+++||+.|+.|+ .+|.|+|+|+.|...
T Consensus 1 s~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9882764799994568999983331022898756689987889270477
No 10
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=95.77 Aligned_cols=50 Identities=30% Similarity=0.769 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 988877633310578971662799995689968888--89999978987531
Q 000839 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1260)
Q Consensus 713 gdd~ndD~C~VCgdGGdLLcCD~CpsafH~~CL~l~--~VP~gdW~Cp~C~C 762 (1260)
..+.+++.|.+|+++|+||+||.|+++||++||.|+ .+|.++|+|+.|..
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3388998183769999778899999724163289897878699767726448
Done!