Query 000842
Match_columns 1258
No_of_seqs 274 out of 1238
Neff 6.7
Searched_HMMs 46136
Date Tue Apr 2 00:17:14 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1879 UDP-glucose:glycoprote 100.0 3E-235 7E-240 2102.6 81.6 1127 1-1226 314-1457(1470)
2 cd06432 GT8_HUGT1_C_like The C 100.0 9.1E-53 2E-57 467.5 20.8 248 951-1198 1-248 (248)
3 PF06427 UDP-g_GGTase: UDP-glu 100.0 1.2E-52 2.6E-57 450.6 19.8 205 624-829 1-211 (211)
4 cd00505 Glyco_transf_8 Members 100.0 4E-38 8.7E-43 351.5 20.1 236 951-1197 1-245 (246)
5 PRK15171 lipopolysaccharide 1, 100.0 1.5E-36 3.2E-41 351.5 19.4 234 949-1197 24-271 (334)
6 cd06431 GT8_LARGE_C LARGE cata 100.0 1.8E-34 3.9E-39 325.8 19.2 249 951-1211 1-267 (280)
7 cd04194 GT8_A4GalT_like A4GalT 100.0 5.6E-34 1.2E-38 318.5 19.6 233 951-1197 1-247 (248)
8 cd06430 GT8_like_2 GT8_like_2 100.0 1.7E-33 3.7E-38 316.1 22.8 263 951-1224 1-291 (304)
9 COG1442 RfaJ Lipopolysaccharid 100.0 6.4E-33 1.4E-37 315.0 21.0 239 950-1204 2-252 (325)
10 cd06429 GT8_like_1 GT8_like_1 100.0 1.2E-32 2.6E-37 306.8 17.6 227 951-1211 1-255 (257)
11 PLN02718 Probable galacturonos 100.0 5.8E-31 1.3E-35 311.7 15.4 253 947-1211 310-588 (603)
12 PLN02523 galacturonosyltransfe 100.0 1.2E-29 2.5E-34 297.2 17.5 251 949-1211 247-544 (559)
13 PLN02742 Probable galacturonos 99.9 5.3E-27 1.1E-31 275.0 16.5 261 949-1219 225-528 (534)
14 PF01501 Glyco_transf_8: Glyco 99.9 1.9E-27 4E-32 264.0 12.0 231 952-1197 1-247 (250)
15 PLN02829 Probable galacturonos 99.9 3.9E-27 8.5E-32 278.2 14.5 260 951-1220 331-633 (639)
16 PLN02769 Probable galacturonos 99.9 4.2E-27 9E-32 280.2 14.6 252 949-1211 328-615 (629)
17 PLN02659 Probable galacturonos 99.9 4.4E-27 9.5E-32 275.1 13.5 172 1031-1211 330-518 (534)
18 PLN02870 Probable galacturonos 99.9 5.3E-27 1.1E-31 274.3 13.1 176 1031-1214 329-520 (533)
19 PLN02867 Probable galacturonos 99.9 1.3E-26 2.8E-31 272.4 14.1 172 1031-1211 331-520 (535)
20 PLN02910 polygalacturonate 4-a 99.9 1.1E-25 2.3E-30 265.4 14.8 252 950-1211 344-642 (657)
21 PLN00176 galactinol synthase 99.9 4.6E-21 9.9E-26 219.2 18.3 243 957-1219 30-299 (333)
22 cd02537 GT8_Glycogenin Glycoge 99.9 4.8E-21 1E-25 213.3 17.1 203 953-1198 3-214 (240)
23 cd06914 GT8_GNT1 GNT1 is a fun 99.7 3.1E-16 6.7E-21 175.9 17.5 206 956-1201 6-243 (278)
24 cd02515 Glyco_transf_6 Glycosy 97.0 0.019 4.2E-07 64.2 16.2 221 947-1188 32-264 (271)
25 COG5597 Alpha-N-acetylglucosam 97.0 0.00047 1E-08 76.8 2.9 137 1028-1178 152-324 (368)
26 KOG1879 UDP-glucose:glycoprote 96.8 1.6 3.4E-05 57.8 32.8 179 287-474 334-526 (1470)
27 PF03414 Glyco_transf_6: Glyco 96.5 0.056 1.2E-06 62.3 15.7 224 947-1187 97-328 (337)
28 PF11051 Mannosyl_trans3: Mann 95.4 0.03 6.5E-07 64.0 7.2 109 953-1069 4-114 (271)
29 cd03019 DsbA_DsbA DsbA family, 94.0 2.3 4.9E-05 44.8 16.5 144 143-324 14-158 (178)
30 PF03407 Nucleotid_trans: Nucl 93.6 0.18 3.9E-06 55.2 7.5 141 1033-1198 54-209 (212)
31 cd03023 DsbA_Com1_like DsbA fa 90.8 8.2 0.00018 39.2 15.3 136 146-323 7-143 (154)
32 PF13462 Thioredoxin_4: Thiore 90.5 7.1 0.00015 40.3 14.7 134 146-323 14-150 (162)
33 PF13620 CarboxypepD_reg: Carb 86.6 2.4 5.1E-05 38.8 7.1 52 794-846 2-54 (82)
34 cd03019 DsbA_DsbA DsbA family, 82.7 62 0.0013 33.8 16.8 144 409-572 14-157 (178)
35 PF01323 DSBA: DSBA-like thior 82.2 43 0.00093 35.6 15.6 159 147-321 1-180 (193)
36 PF13715 DUF4480: Domain of un 80.9 13 0.00029 34.5 9.6 47 794-846 2-50 (88)
37 PF07210 DUF1416: Protein of u 79.1 11 0.00025 35.0 8.0 54 791-846 7-60 (85)
38 PF13462 Thioredoxin_4: Thiore 78.1 59 0.0013 33.3 14.5 43 410-452 12-56 (162)
39 PF00535 Glycos_transf_2: Glyc 70.8 22 0.00047 35.8 8.9 102 953-1070 2-104 (169)
40 cd00761 Glyco_tranf_GTA_type G 67.3 47 0.001 32.3 10.4 88 963-1064 9-96 (156)
41 PF05637 Glyco_transf_34: gala 66.5 6.7 0.00015 44.1 4.4 55 999-1060 34-91 (239)
42 PF08400 phage_tail_N: Prophag 64.2 24 0.00052 36.1 7.3 58 791-848 2-64 (134)
43 cd03025 DsbA_FrnE_like DsbA fa 60.6 1.4E+02 0.0031 31.6 13.2 157 146-316 1-176 (193)
44 cd06423 CESA_like CESA_like is 59.6 82 0.0018 31.4 10.7 90 962-1065 8-99 (180)
45 cd03023 DsbA_Com1_like DsbA fa 59.1 2E+02 0.0043 28.8 17.0 136 410-569 5-140 (154)
46 KOG1948 Metalloproteinase-rela 58.7 61 0.0013 42.1 10.7 98 747-849 77-175 (1165)
47 cd04196 GT_2_like_d Subfamily 58.2 66 0.0014 34.2 10.2 93 963-1068 10-103 (214)
48 PF13743 Thioredoxin_5: Thiore 57.8 1.3E+02 0.0028 32.2 12.0 151 150-316 2-155 (176)
49 PRK10954 periplasmic protein d 55.5 1.9E+02 0.0041 31.6 13.2 46 276-322 135-180 (207)
50 PRK10954 periplasmic protein d 51.2 3.6E+02 0.0078 29.4 14.8 54 512-570 126-179 (207)
51 PF03452 Anp1: Anp1; InterPro 49.3 2.3E+02 0.0049 32.7 12.7 132 947-1082 23-177 (269)
52 PRK11204 N-glycosyltransferase 48.1 1.2E+02 0.0026 36.7 11.3 113 949-1078 54-168 (420)
53 cd04185 GT_2_like_b Subfamily 46.0 1.1E+02 0.0024 32.4 9.5 93 963-1068 9-103 (202)
54 cd03022 DsbA_HCCA_Iso DsbA fam 44.4 1.5E+02 0.0032 31.4 10.0 97 214-323 85-181 (192)
55 cd04186 GT_2_like_c Subfamily 42.6 1.9E+02 0.004 29.0 10.1 89 963-1068 9-98 (166)
56 cd06420 GT2_Chondriotin_Pol_N 41.4 2E+02 0.0042 29.8 10.3 95 963-1069 9-104 (182)
57 cd06439 CESA_like_1 CESA_like_ 40.6 2.8E+02 0.0061 30.5 11.9 99 951-1068 31-133 (251)
58 cd02520 Glucosylceramide_synth 40.4 1.9E+02 0.0042 30.7 10.3 97 961-1068 11-110 (196)
59 cd04187 DPM1_like_bac Bacteria 39.6 2.6E+02 0.0057 29.0 10.9 92 963-1068 9-104 (181)
60 PRK14583 hmsR N-glycosyltransf 37.0 2.9E+02 0.0063 33.9 12.3 102 949-1067 75-178 (444)
61 cd06435 CESA_NdvC_like NdvC_li 36.2 3.3E+02 0.0071 29.6 11.5 104 963-1078 11-117 (236)
62 PF04765 DUF616: Protein of un 36.0 58 0.0013 38.0 5.4 124 947-1080 62-189 (305)
63 cd03863 M14_CPD_II The second 34.2 1E+02 0.0023 37.1 7.5 51 791-846 296-347 (375)
64 PF10111 Glyco_tranf_2_2: Glyc 33.3 5E+02 0.011 29.7 12.7 150 966-1127 19-187 (281)
65 PRK05454 glucosyltransferase M 33.0 3.1E+02 0.0067 35.9 11.9 121 949-1079 124-255 (691)
66 PRK15036 hydroxyisourate hydro 32.3 87 0.0019 32.3 5.5 54 793-846 28-89 (137)
67 PRK14716 bacteriophage N4 adso 31.3 5.6E+02 0.012 32.3 13.4 117 949-1072 66-185 (504)
68 cd04190 Chitin_synth_C C-termi 30.3 1.2E+02 0.0025 33.9 6.7 79 960-1067 6-96 (244)
69 cd02514 GT13_GLCNAC-TI GT13_GL 29.6 2.5E+02 0.0055 33.4 9.5 108 951-1066 2-118 (334)
70 PF13641 Glyco_tranf_2_3: Glyc 29.6 69 0.0015 34.7 4.7 104 951-1067 3-109 (228)
71 cd03866 M14_CPM Peptidase M14 29.3 1E+02 0.0022 37.2 6.4 53 791-846 294-346 (376)
72 PRK06437 hypothetical protein; 28.7 49 0.0011 29.7 2.6 21 550-570 27-47 (67)
73 KOG1928 Alpha-1,4-N-acetylgluc 27.4 30 0.00065 41.1 1.3 18 1050-1067 242-259 (409)
74 cd04192 GT_2_like_e Subfamily 27.3 3.4E+02 0.0074 29.0 9.6 95 962-1067 8-105 (229)
75 cd06245 M14_CPD_III The third 27.1 1E+02 0.0022 37.0 5.8 50 791-846 286-335 (363)
76 cd06421 CESA_CelA_like CESA_Ce 26.7 4.8E+02 0.01 28.0 10.7 101 951-1067 3-107 (234)
77 cd06434 GT2_HAS Hyaluronan syn 26.3 5.6E+02 0.012 27.6 11.2 107 951-1078 2-110 (235)
78 cd04195 GT2_AmsE_like GT2_AmsE 25.6 6.9E+02 0.015 26.1 11.4 89 964-1067 13-103 (201)
79 PF03666 NPR3: Nitrogen Permea 25.5 2.7E+02 0.0058 34.6 9.0 33 281-317 188-220 (452)
80 cd04191 Glucan_BSP_ModH Glucan 25.3 4.8E+02 0.01 29.6 10.5 104 966-1079 15-130 (254)
81 TIGR03472 HpnI hopanoid biosyn 24.8 5.2E+02 0.011 30.9 11.3 102 949-1062 41-143 (373)
82 PRK10877 protein disulfide iso 23.9 3.1E+02 0.0068 30.7 8.6 38 146-183 109-146 (232)
83 cd06436 GlcNAc-1-P_transferase 23.6 7E+02 0.015 26.4 11.0 96 961-1062 7-106 (191)
84 PF03071 GNT-I: GNT-I family; 23.1 3E+02 0.0065 33.9 8.6 114 947-1067 91-213 (434)
85 PF12633 Adenyl_cycl_N: Adenyl 22.5 1.1E+02 0.0024 33.7 4.4 52 970-1022 106-165 (204)
86 cd03024 DsbA_FrnE DsbA family, 22.0 3.3E+02 0.0071 29.1 8.1 44 276-320 143-186 (201)
87 COG0463 WcaA Glycosyltransfera 21.9 4.1E+02 0.0089 26.6 8.6 46 960-1005 12-57 (291)
88 cd06427 CESA_like_2 CESA_like_ 21.8 5.7E+02 0.012 28.1 10.2 93 961-1067 11-107 (241)
89 cd03858 M14_CP_N-E_like Carbox 21.0 1.3E+02 0.0029 36.1 5.3 49 793-846 299-347 (374)
90 PLN03182 xyloglucan 6-xylosylt 20.8 5.6E+02 0.012 31.2 10.0 124 1042-1189 195-358 (429)
91 TIGR03469 HonB hopene-associat 20.3 6.6E+02 0.014 30.1 11.1 111 949-1067 40-156 (384)
92 cd03868 M14_CPD_I The first ca 20.1 1.8E+02 0.0039 35.1 6.0 49 793-846 297-345 (372)
No 1
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-235 Score=2102.63 Aligned_cols=1127 Identities=45% Similarity=0.753 Sum_probs=997.8
Q ss_pred ChhhhcccchhhHhhhcCCCChhHHHHHHHHhhc-----CCCCceEEEECCcccCCCCCCHhHHHHHHHHHHHHHHHhhh
Q 000842 1 MQEISQNFPSVVSSLSRMKLNDSIKDEIVANQRY-----MPPGKSLMALNGALINIEDIDLYLLIDLVHQELSLADQFSK 75 (1258)
Q Consensus 1 L~~isqNFP~~A~~Ls~~~v~~~~~~ei~~Nq~~-----~~~G~~~L~ING~~i~~~~ld~F~Ll~~Lr~E~~~~~~L~~ 75 (1258)
|++|+||||.+|++|++++|++++++|+++||+. +++|.++|||||+.++.+++|+|+|+++|++|.+++++|++
T Consensus 314 mk~i~qNFP~~Ar~Ls~~~Vn~~lr~ei~~nq~~~~~~~v~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~ 393 (1470)
T KOG1879|consen 314 MKEISQNFPTHARSLSKQSVNEDLRTEIEENQSKLEAKGVPPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHN 393 (1470)
T ss_pred HHHHHhcchHHHHHHHHHHhhHHHHHHHHHhhhhhhhcCCCCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999984 79999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHhhccCCCC-CCCceEEEccCCCeeeeccccCchhhhhchhhHHHhhccCCCCCcccccccccceEEEEcC
Q 000842 76 LKIPRTITQKLLSTVPPA-ESSMFRVDFRSTHVQYLNNLEEDAMYKRWRSNINEILMPVFPGQLRYIRKNLFHAVYVLDP 154 (1258)
Q Consensus 76 lGl~~~~a~~LL~~~~~~-~~~~~r~D~r~~~IiwlNDIEkD~~Y~~wp~sl~~ll~p~~pGqlp~vRrNi~nlVfviDp 154 (1258)
+|+.+..+.++|+..... +.+++++|+|+.+|+|+||||+|++|.+||+|+|.||+|+||||||+|||||||+||||||
T Consensus 394 lgi~~~~l~~~l~l~~~~~~~~~~~~Dir~~~v~~vNdlEsD~~Y~~w~~Svq~lL~P~~PG~lr~IrkNl~nlV~vIDp 473 (1470)
T KOG1879|consen 394 LGIDGEFLSKLLKLDLSKSEKQEYAVDIRSEAVIWVNDLESDPQYDRWPSSVQLLLKPTFPGQLRPIRKNLFNLVFVIDP 473 (1470)
T ss_pred cCCchhHHHHhhccccCcccccceeeecccccceeecccccchhhcchhHHHHHHhCCCCCCcchHHHhhheeEEEEecC
Confidence 999999999999754432 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcccceEEEEEeeecccccceeccCCccCCCcccCCCCCCCchhHHHHHHHHHHHHhhChHHHH
Q 000842 155 ATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFIKESHGTQTAF 234 (1258)
Q Consensus 155 s~~~~~~~l~~l~~~~~~~~PiR~GlVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iar~f~~l~~~~g~~~al 234 (1258)
+++++++++..+.+|+.|++|+|||+||+.++ .+ ++...|.++++.|+|+||++..|...|+
T Consensus 474 a~~~~~~~l~~~~~f~s~~~P~R~G~v~~~nd----~~--------------~d~~~d~g~av~~af~yi~~~~d~~~Al 535 (1470)
T KOG1879|consen 474 ATPEDLEFLKTARNFVSHQIPVRIGFVFIAND----DD--------------EDGVTDLGVAVLRAFNYISEESDNLTAL 535 (1470)
T ss_pred CCccchHHHHHHHHHhcCCCceEEEEEEEecC----Cc--------------ccchhhHHHHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999886 11 1223488999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCchhhhhhhhhhhHhhcccCCCCCChhhhhhhhccchhhHHHHHHHHHHHHhCCCccCceeE
Q 000842 235 QFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLL 314 (1258)
Q Consensus 235 ~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~rlgi~~~~p~vl 314 (1258)
.||.+++...+. ...+..+++...|.++ ++. ....+.++.++.||..++++..|+.++||+. .|+|+
T Consensus 536 k~l~~~~~~~~~------~~~~~~e~v~~~~~~~-~~~-----~~~~~il~~~s~~d~~~~~~~~fv~~lGl~~-~p~vL 602 (1470)
T KOG1879|consen 536 KFLTNIYSDVRS------DEYVLVEHVKGVFENT-LPN-----AKKDDILGIDSTYDEGRKAGFSFVQELGLDS-LPSVL 602 (1470)
T ss_pred HHHHHHHhhhcc------cchhHHHhhhHHHHhh-ccc-----cchhhhhccccchhhcchHHHHHHHHhCCCc-cCeee
Confidence 999999776543 3335578888888553 222 2223666788999999999999999999954 89999
Q ss_pred EcceeccCch------HHHHHHHHHHHHHHHHHHHccccCChhhHHHHHHhc-ccccccccccccCCCCCCeEeeccccc
Q 000842 315 MNGLVSESSE------EALLNAMNDELQRIQEQVYYGNINSYTDVLEKVLSE-SGINRYNPQIITDAKVKPKFISLASSF 387 (1258)
Q Consensus 315 vNG~~~~~~~------~~l~~~i~~el~~lQ~~vy~g~l~d~~dll~~ll~~-~a~~r~N~~I~~~~~~~~~y~~l~~~~ 387 (1258)
+||+|++..+ .++++.|+++++.||++||.|+++|++++++++|.+ ++++|+|++|.+..+.-..+.++....
T Consensus 603 ~NG~i~~~~~~~~~~e~~i~~~i~~~t~~iQ~av~~G~l~d~~~~~d~ll~~~~v~~R~N~~i~~~~~~~~~v~s~l~~~ 682 (1470)
T KOG1879|consen 603 LNGEIFDHESNAWDLEESILQEIMKDTPFIQRAVYEGKLEDDQNVVDFLLEQKSVLPRINKRILSGSKFLDSVVSILSST 682 (1470)
T ss_pred ECCeeccccccccchHHHHHHHHHhhhHHHHHHHHcCCCccchHHHHHHHhCccccccccccccccccchhhHHhhhcch
Confidence 9999999665 389999999999999999999999999999999999 999999999998433333344434444
Q ss_pred ccchhhhhcCccccCCCCCCCCcceEEEEEeeCCCHhHHHHHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHH
Q 000842 388 LGRETELKDINYLHSPETVDDVKPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFE 467 (1258)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~lv~D~~~~~~~~~l~~~l~~l~~~~~~~Rv~~i~~~~~~~~~~~~~l~~~~~ 467 (1258)
.+.+.+++++.|++++ +.....++|+|+|+||++++|+++|.+||++++ ++.++||++|.||++.......++++.|+
T Consensus 683 ~k~~~~~~~~~Yl~~~-~~~~~~~vT~wlvaDf~~~~grklL~~al~~~~-~s~~~Ri~~I~np~s~~~~~~~s~~~~i~ 760 (1470)
T KOG1879|consen 683 DKSAVLLKNVNYLTKK-TEESNLPVTIWLVADFESPSGRKLLTNALDYLK-SSKNARIGLIPNPSSESAEGSNSIKRPIL 760 (1470)
T ss_pred hhhhHHHhhccccccC-chhhccceEEEEEcccCChhHHHHHHHHHHHHh-ccccceEEEecCchhhhhcccccccchHH
Confidence 5677899999999776 456677899999999999999999999999985 58999999999998744455667888899
Q ss_pred HhhhccchhhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHhhcCCChHHHhhhcCccchhhhHHHHHHHHH
Q 000842 468 ITASTYSHKKKVLEFLDQLCSFYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQ 547 (1258)
Q Consensus 468 aa~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 547 (1258)
|++.++.. ++.++.....+.. +.. ...++ ...+++|+.++..... ..++.
T Consensus 761 aal~~~~~---------~l~~e~~~~~~~~----~~~------------~~~~i-~s~~e~~~~~~~~~l~----~~~~~ 810 (1470)
T KOG1879|consen 761 AALLFLPA---------KLAKEEVASHLYK----GKN------------SDLSI-GSKFEKDLEKLLLFLK----KLHSF 810 (1470)
T ss_pred HHHhcCcH---------hhhHHHHHHHhhc----Ccc------------cccch-hHHHHHhhhhhhhhHH----hhhhH
Confidence 98877652 2222111111100 000 00111 1346667665543332 24667
Q ss_pred HHHHHhCCCCCCcEEEEcCEEe-cCCCCCCCCHhhHHHHHHHHHHhhhHHHHHHHHHhcccCCCCCCCcccccchhhhhh
Q 000842 548 FLHRQLGVESGANAVITNGRVT-FPIDESTFLSHDLSLLESVEFKHRIKHIWEIIEEVNWQETYPDIDPDMLTSKFVSDI 626 (1258)
Q Consensus 548 ~~~~~l~l~~g~~~~v~NGR~i-~~~~~~~~~~~Df~~L~~~e~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 626 (1258)
+|++.+|+.+|+++|+.|||++ |+...+.|..+||.+|++++..++.++|.++++... ..+.....++.
T Consensus 811 ~~~~vl~l~~~q~~Vv~Ngr~igpl~~~E~f~t~Df~lLe~~~~~~~~~ki~~~~~~~~----------~~v~~~~~sd~ 880 (1470)
T KOG1879|consen 811 IVKEVLGLNSGQRAVVSNGRFIGPLSSSESFNTADFKLLESMLFSNYSQKISNIIEESE----------LDVSEDVFSDF 880 (1470)
T ss_pred HHHhhhccCCCcceeeecCeEEEeccchhhhchhhHHHHHHHhccccchhHHHHHHHhh----------hcchhhhhhhh
Confidence 8999999999999999999999 555569999999999999999999999998888643 12334567788
Q ss_pred hhhhhcccccccCCcccccccccccceeeEEeCC--CCceEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEEEEccCC
Q 000842 627 ILFVTSSMAMRDRSSESARFEILSAEYSAVVFNS--ENSTIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRIVLNPMS 704 (1258)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~--~~~~~~v~~ilDPlse~aQk~~~ll~~l~~~~~v~i~i~lnP~~ 704 (1258)
.|++.+......++..+.++..++.+|+++.+++ ..+.|+|+||+||||++||||+|||.+|+++.+|+|||+|||+.
T Consensus 881 ~~~v~~~~~t~~~s~~r~~~~~~~~~~s~v~~~~~~~~a~idv~aVlDPlsreaQkl~sll~~l~kl~n~~i~i~lnP~~ 960 (1470)
T KOG1879|consen 881 LMKVAALMSTQDKSRPRMDFSFLKDEHSVVKFPPDENNATIDVLAVLDPLSREAQKLASLLEVLRKLTNVNIRIILNPKS 960 (1470)
T ss_pred hhhhhcccccCCccccccchhhhcCCCceeecCCCCCCceEEEEEEecCCCHHHHHHHHHHHHHHHhcCcceEEEEcCch
Confidence 8998886666666667788888899999999866 35679999999999999999999999999999999999999999
Q ss_pred CCCccCccceeecccCCCcCCCCCCccccCCceeeccCCCCCceEEeccCCCCeEEeeecccccCCcccccccCCCcceE
Q 000842 705 SLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQ 784 (1258)
Q Consensus 705 ~l~~~PlkrfYr~v~~~~~~F~~~g~~~~~~~a~F~~lP~~~lltl~~d~P~~W~v~~~~~~~DlDNi~l~~~~~~~~~~ 784 (1258)
+++|||||||||||+++++.|+++|....+ .|+|.+||.++||||+||+|++|+|+++.++||||||+|++.+ ++|+
T Consensus 961 ~lse~PlkrfYRyV~~~e~~f~~~g~~~~~-~a~F~nlP~~~lltm~l~~pesWlVe~v~a~~DLdNI~Le~~~--~~v~ 1037 (1470)
T KOG1879|consen 961 KLSEMPLKRFYRYVLEAELSFSANGSDSDG-VAKFDNLPASPLLTMNLDVPESWLVEAVRAIYDLDNIKLEDTS--SDVT 1037 (1470)
T ss_pred hhhhccHHHHHHhhcCcccccccCCccccc-eeeecCCCcCceeEEeecCCCceEeeeccccccchheeeeccC--Cchh
Confidence 999999999999999999999999988777 8999999999999999999999999999999999999999985 4899
Q ss_pred EEEEeeeEEEEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEecCCCCCcceEEeecCCC
Q 000842 785 AVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQLAPGRSSELYVLKEDGNV 863 (1258)
Q Consensus 785 a~yeLe~ilieG~~~d~~~-~~p~GlqL~L~~~~~~~~~dTivManlGYfQlka~PG~w~l~l~~grS~~~y~i~~~~~~ 863 (1258)
|+||||+||+||||+|..+ +|||||||+|||.++|+.+||||||||||||||||||+|.|+||+|||+++|.|.++.+
T Consensus 1038 A~yele~lLleG~c~d~~~g~pprGlql~Lgt~~~p~i~DTiVManlGYfQlKanPG~W~L~lr~G~S~d~y~i~s~dg- 1116 (1470)
T KOG1879|consen 1038 AEYELEYLLLEGHCFDKVSGQPPRGLQLTLGTSANPHIVDTIVMANLGYFQLKANPGAWILRLRDGRSSDIYQIVSHDG- 1116 (1470)
T ss_pred eeeehhhhhccceehhhccCCCCCceEEEeccCCCCeeeeeEEEeccceeEEecCCcceEEEecCCCchhheeeecccC-
Confidence 9999999999999999887 99999999999999999999999999999999999999999999999999999998553
Q ss_pred CcCCCCccEEEEecCCCceEEEEEEecCCccccccccCCcccccccccCCccccccccccccccCCcccchhhhhcccCc
Q 000842 864 NEDRSLSKRITINDLRGKVVHMEVVKKKGKENEKLLVSSDEDSHSQAEGHWNSNFLKWASGFIGGSEQSKKEKAAVDHGK 943 (1258)
Q Consensus 864 ~~~~~~~~~v~v~sf~g~~i~~~v~k~~g~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1258)
.++..+..+|.|+||+|++|.|+|+|+||||++++|.+. .+.|.|+|+. +|.|+..+.
T Consensus 1117 ~~~~~~~~qvvidSf~gk~v~vkV~k~~g~e~edll~~~------~~~g~wns~k-----~f~~~~~~~----------- 1174 (1470)
T KOG1879|consen 1117 TPDQSSDIQVVIDSFRGKVVKVKVSKKPGMEEEDLLSDE------KEEGFWNSIK-----SFTGGLAKS----------- 1174 (1470)
T ss_pred CCCcCCCceEEEecCCceEEEEEEeecCCcchhhhhcch------hhhhhhhhhh-----hhccccccc-----------
Confidence 334467889999999999999999999999999999872 1357899943 322222111
Q ss_pred ccccCceeeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccc
Q 000842 944 VERHGKTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ 1023 (1258)
Q Consensus 944 ~~~~~~~InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~ 1023 (1258)
.+++.++||||+||+||+|||++.+||.||++||+++||||+|.++|||.|++.|++|+++|||+|++++|+||.|||+|
T Consensus 1175 ~~~~~~vINIFSvASGHLYERflrIMm~SvlknTktpVKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~YkWPrWLhqQ 1254 (1470)
T KOG1879|consen 1175 MKKDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTPVKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQYKWPRWLHQQ 1254 (1470)
T ss_pred ccCccceEEEEeeccccHHHHHHHHHHHHHHhCCCCceeEEeehhhcChHHHHHHHHHHHHhCceEEEEEecCchhhhhh
Confidence 12234589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccCC
Q 000842 1024 KEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR 1103 (1258)
Q Consensus 1024 ~~~~r~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l~ 1103 (1258)
+++||++|+|++||||+|||.+++||||+|||+|||+||.||+++|++|+|+|++|+|++|++|+|||||++|||++||.
T Consensus 1255 ~EKQRiiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~GaPygYtPfCdsR~EMDGyRFWK~GYW~~hL~ 1334 (1470)
T KOG1879|consen 1255 TEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGGAPYGYTPFCDSRREMDGYRFWKQGYWKKHLR 1334 (1470)
T ss_pred hhhhhhhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCCCccccCccccccccccchhHHhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCcccccCCccccccCccCccccCCCe
Q 000842 1104 GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSKAK 1183 (1258)
Q Consensus 1104 ~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~~~~~~~~ak 1183 (1258)
|++||+|++|||||+|||+..+||++|.+||.||.||+||.|+|||++|.|++++||++||++|.||+|||+++++++||
T Consensus 1335 grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDLPNnm~hqVpIkSLPqeWLWCETWC~d~skkkAk 1414 (1470)
T KOG1879|consen 1335 GRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMQHQVPIKSLPQEWLWCETWCDDESKKKAK 1414 (1470)
T ss_pred cCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhccccccccceeecccccCCcchhhhhhhcCchhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHHHHhcccc
Q 000842 1184 TIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFTAKILGEE 1226 (1258)
Q Consensus 1184 ii~~~~np~~k~~~l~~a~r~~~~w~~~d~~~~~~~~~~~~~~ 1226 (1258)
|||+||||+||||||++|+|+++||.+||.|+++++.++..++
T Consensus 1415 tIDLCnNP~TKEpKL~~A~Riv~EW~dyD~Ei~~v~s~~~~~~ 1457 (1470)
T KOG1879|consen 1415 TIDLCNNPLTKEPKLDAARRIVSEWTDYDAEIRSVLSKAQDED 1457 (1470)
T ss_pred hhhhhcCccccchhhHHHhhhcCCCcccchHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999998776
No 2
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=9.1e-53 Score=467.51 Aligned_cols=248 Identities=78% Similarity=1.420 Sum_probs=231.9
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHH
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 1030 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~ 1030 (1258)
||||+|++|+.|+.++++||+||+.|++.+++|||+++++|+++++.|+++.++++++++|+.++||.|++.+....+..
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~ 80 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRII 80 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhH
Confidence 79999999999999999999999999987899999999999999999999999999999999999999887766555556
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccCCCCCceec
Q 000842 1031 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1110 (1258)
Q Consensus 1031 ~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l~~~~YfNS 1110 (1258)
++|+||+++.+||++++||||||+|+||++||++||++||+|+++|||+||....+..+.++|.++||++.+.++.||||
T Consensus 81 ~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNS 160 (248)
T cd06432 81 WGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHIS 160 (248)
T ss_pred HHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccce
Confidence 89999999999999999999999999999999999999999999999999986555566788999999888877789999
Q ss_pred ceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCcccccCCccccccCccCccccCCCeEEEccCC
Q 000842 1111 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSKAKTIDLCNN 1190 (1258)
Q Consensus 1111 Gv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~~~~~~~~akii~~~~n 1190 (1258)
|||||||++||+++++++++++++.++.++.++.++|||+||.++.+.+|+.||++||||+.||.++.+++|+|||||+|
T Consensus 161 GVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~~~~~i~~Lp~~w~~~~~~~~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 161 ALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQHQVPIFSLPQEWLWCETWCSDESKKKAKTIDLCNN 240 (248)
T ss_pred eeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHhccCCeEECChHHHHHHHHhcccccCccceeecccC
Confidence 99999999999999999999999988888888999999999999987679999999999999999999999999999999
Q ss_pred CCCCChhh
Q 000842 1191 PMTKEPKL 1198 (1258)
Q Consensus 1191 p~~k~~~l 1198 (1258)
|.++||++
T Consensus 241 ~~~~~~~~ 248 (248)
T cd06432 241 PLTKEPKL 248 (248)
T ss_pred CCCCCCCC
Confidence 99999874
No 3
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=100.00 E-value=1.2e-52 Score=450.56 Aligned_cols=205 Identities=46% Similarity=0.743 Sum_probs=185.2
Q ss_pred hhhhhhhhcccccccCCc--ccccccccccceeeEEeC---CCCceEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEE
Q 000842 624 SDIILFVTSSMAMRDRSS--ESARFEILSAEYSAVVFN---SENSTIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRI 698 (1258)
Q Consensus 624 s~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~s~~~~~---~~~~~~~v~~ilDPlse~aQk~~~ll~~l~~~~~v~i~i 698 (1258)
||..|++++....+.+.+ ++..+..++..|+++.++ ++.+.++|+|||||+||.||||++||+.|+++.+|+|+|
T Consensus 1 sD~~~~~~s~l~~~~~~~~~r~~~~~~~~~~~s~~~~~~~~~~~~~i~v~~vvDPlse~aQkl~sll~~l~~~~~v~i~i 80 (211)
T PF06427_consen 1 SDWFMLVSSLLSSSFHRDSSRVDRFDFLSDNHSSFEVGPKDNDESPIDVVAVVDPLSEEAQKLASLLSVLSELPFVNIRI 80 (211)
T ss_pred CcEEEEeeeeeeccccCccceeeehhccCCCceEEEecCCCCCCccEEEEEEECCCCHHHHHHHHHHHHHHhccCceEEE
Confidence 355666677655444433 234557788888888886 345689999999999999999999999999999999999
Q ss_pred EEccCCCCCccCccceeecccCCCcCCCCCCccccCCceeeccCCCCCceEEeccCCCCeEEeeecccccCCcccccccC
Q 000842 699 VLNPMSSLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLG 778 (1258)
Q Consensus 699 ~lnP~~~l~~~PlkrfYr~v~~~~~~F~~~g~~~~~~~a~F~~lP~~~lltl~~d~P~~W~v~~~~~~~DlDNi~l~~~~ 778 (1258)
+|||+.+++|+|||||||||++++++|+++|.++. |.|.|++||.+++||++||+|++|+|+|++|.||||||+|++++
T Consensus 81 ~LnP~~~~~elPlkrFYR~v~~~~~~F~~~G~~~~-p~a~F~~lP~~~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~ 159 (211)
T PF06427_consen 81 LLNPTSKLSELPLKRFYRYVLPSEPQFDADGRLIP-PSAVFSNLPSSPLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLS 159 (211)
T ss_pred EECCccccCcceeeeEEeecCCcccccCCCCCccC-ceeEEecCcCCceEEecCCCCCceEEEEeecCcCCCceecccCC
Confidence 99999999999999999999999999999999886 99999999999999999999999999999999999999999997
Q ss_pred CCcceEEEEEeeeEEEEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEec
Q 000842 779 DTRTLQAVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN 829 (1258)
Q Consensus 779 ~~~~~~a~yeLe~ilieG~~~d~~~-~~p~GlqL~L~~~~~~~~~dTivMan 829 (1258)
++..++|+||||||||||||+|.++ .|||||||+|++..++..+|||||||
T Consensus 160 ~~~~v~a~y~Le~iLieG~~~d~~~~~pp~Glql~L~~~~~~~~~DTiVMaN 211 (211)
T PF06427_consen 160 SGTTVEAVYELESILIEGHARDITTGSPPRGLQLQLGTENGPHSVDTIVMAN 211 (211)
T ss_pred CCceEEEEEEEeeEEEEeEEeecCCCCCCCCcEEEEecCCCCcccCceEeCC
Confidence 6446999999999999999999987 99999999999999999999999998
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=4e-38 Score=351.53 Aligned_cols=236 Identities=29% Similarity=0.395 Sum_probs=194.1
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccc-cccH
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQRI 1029 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~-~~r~ 1029 (1258)
|||+++|+|++|.++++++++||++|++.+++|||+++++|++.++.|..+.+.+++.++|++++++.+...+.. +.+.
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIK 80 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccc
Confidence 799999999999999999999999998889999999999999999999999888899999999987765443332 2223
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccCCCCCcee
Q 000842 1030 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHI 1109 (1258)
Q Consensus 1030 ~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l~~~~YfN 1109 (1258)
.++|+||++|.+|| +++||||||+|+||++||++||+++++++++|||+||.......+++ +|.....+.+|||
T Consensus 81 ~~~y~RL~i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~-----~~~~~~~~~~yfN 154 (246)
T cd00505 81 IVTLTKLHLPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYR-----QKRSHLAGPDYFN 154 (246)
T ss_pred cceeHHHHHHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhh-----cccCCCCCCCcee
Confidence 38999999999999 89999999999999999999999999999999999986422222211 1222234568999
Q ss_pred cceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccC--cccccCCccccccCccCcc------ccCC
Q 000842 1110 SALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTV--PIFSLPQEWLWCESWCGNA------TKSK 1181 (1258)
Q Consensus 1110 SGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~--~I~~Lp~~wN~~~~~~~~~------~~~~ 1181 (1258)
|||||||+++||+++..+++.+.+.+ ...++.++|||+||.+|.+. +|..||++||+|.++|... ...+
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQd~LN~~~~~~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~ 231 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEKWLQ---SLSSLSGGDQDLLNTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKN 231 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHHHHh---hcccCccCCcHHHHHHHhcCCCeEEECCCeeeEEecCccccccchhhhcCC
Confidence 99999999999988877777665542 34568889999999999963 3999999999998876432 4678
Q ss_pred CeEEEccCCCCCCChh
Q 000842 1182 AKTIDLCNNPMTKEPK 1197 (1258)
Q Consensus 1182 akii~~~~np~~k~~~ 1197 (1258)
++|||||++ +|+|.
T Consensus 232 ~~iiHy~g~--~KPW~ 245 (246)
T cd00505 232 AKVIHFNGP--TKPWN 245 (246)
T ss_pred CEEEEeCCC--CCCCC
Confidence 999999985 57763
No 5
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.5e-36 Score=351.47 Aligned_cols=234 Identities=17% Similarity=0.202 Sum_probs=185.9
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCC-CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccc
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1027 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~-~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~ 1027 (1258)
.+|||++ ++|++|..+++++|.||+.|++ .+++|||+++++|.+.++.|.++++.++.++.++.++ +.++.......
T Consensus 24 ~~i~Iv~-~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id-~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAY-GIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLIN-CERLKSLPSTK 101 (334)
T ss_pred CceeEEE-ECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeC-HHHHhCCcccC
Confidence 5799998 5788999999999999999876 4799999999999999999999999999999999887 44444322222
Q ss_pred cH-HHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEee-ccCCCCCCCCccccccchhhccC--C
Q 000842 1028 RI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTP-FCDNNKDMDGYRFWRQGFWKDHL--R 1103 (1258)
Q Consensus 1028 r~-~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~-d~~~~~~~~g~~~w~~gyw~~~l--~ 1103 (1258)
+. ..+|+|||+|++||+++|||||||||+||++||++||++|+++..+|||. ++.. .+|... +..+ +
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~-------~~~~~~--~~~l~~~ 172 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDA-------EWWSKR--AQSLQTP 172 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccch-------hHHHHH--HHhcCCc
Confidence 33 38999999999999889999999999999999999999999976777764 4321 112111 1122 1
Q ss_pred --CCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCcccccCCccccccCcc-------
Q 000842 1104 --GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC------- 1174 (1258)
Q Consensus 1104 --~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~------- 1174 (1258)
+..|||||||||||++||++++++++++++..- .....+.++|||+||.+|.+ .|..||++||+|.+..
T Consensus 173 ~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~-~~~~~~~~~DQDiLN~~~~~-~~~~L~~~wN~~~~~~~~~~~~~ 250 (334)
T PRK15171 173 GLASGYFNSGFLLINIPAWAQENISAKAIEMLADP-EIVSRITHLDQDVLNILLAG-KVKFIDAKYNTQFSLNYELKDSV 250 (334)
T ss_pred cccccceecceEEEcHHHHHHhhHHHHHHHHHhcc-ccccceeecChhHHHHHHcC-CeEECCHhhCCccchhHHHHhcc
Confidence 246999999999999999999999999988621 11246888999999999995 8999999999986532
Q ss_pred CccccCCCeEEEccCCCCCCChh
Q 000842 1175 GNATKSKAKTIDLCNNPMTKEPK 1197 (1258)
Q Consensus 1175 ~~~~~~~akii~~~~np~~k~~~ 1197 (1258)
.......++|||||+ .+|+|+
T Consensus 251 ~~~~~~~p~IIHy~G--~~KPW~ 271 (334)
T PRK15171 251 INPVNDETVFIHYIG--PTKPWH 271 (334)
T ss_pred cccccCCCEEEEECC--CCCCCC
Confidence 122245789999997 457774
No 6
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=1.8e-34 Score=325.80 Aligned_cols=249 Identities=19% Similarity=0.218 Sum_probs=182.2
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccc-c-ccccc
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHK-Q-KEKQR 1028 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~-~-~~~~r 1028 (1258)
|++..|+++.+|.++++++|+||+.|+..+++||||++++|.+.++.|.+..+.+++++.|+.++ .+... . ....|
T Consensus 1 ~~~~iv~~~~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~--~~~~~~~~~~~~~ 78 (280)
T cd06431 1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAE--ELKSRVSWIPNKH 78 (280)
T ss_pred CEEEEEEccCCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhH--HhhhhhccCcccc
Confidence 46666777789999999999999999888899999999999999999988888889999999885 11111 0 11123
Q ss_pred HH--HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhc--CCCC-CeEEEeeccCCCCCCCCccccccchhhccC-
Q 000842 1029 II--WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKG-RPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1102 (1258)
Q Consensus 1029 ~~--~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~--dl~~-~~~aav~d~~~~~~~~g~~~w~~gyw~~~l- 1102 (1258)
.+ .+|+|||+|.+||++++||||||||+||++||++||++ |+.+ +++|++++... ++....|+...
T Consensus 79 ~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~--------~~~~~~~~~~~~ 150 (280)
T cd06431 79 YSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSD--------WYLGNLWKNHRP 150 (280)
T ss_pred hhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchh--------hhhhhhhhccCC
Confidence 33 47799999999998899999999999999999999998 6765 46666665311 00001111111
Q ss_pred --CCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCc--ccccCCccccccCccCc--
Q 000842 1103 --RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWCESWCGN-- 1176 (1258)
Q Consensus 1103 --~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~--I~~Lp~~wN~~~~~~~~-- 1176 (1258)
....|||||||||||++||++++.+++.....+.......+.++|||+||.++.+.+ ++.||++||+|.++...
T Consensus 151 ~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~~~~~L~~~wN~~~~~~~~~~ 230 (280)
T cd06431 151 WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSE 230 (280)
T ss_pred CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcceeEECCCccccccCccchHh
Confidence 113599999999999999999999998866543212234577899999999999743 78899999998643211
Q ss_pred ---cccCCCeEEEccCCCCCCChhhH-HhhhcccCCchh
Q 000842 1177 ---ATKSKAKTIDLCNNPMTKEPKLQ-GARRIVSEWPDL 1211 (1258)
Q Consensus 1177 ---~~~~~akii~~~~np~~k~~~l~-~a~r~~~~w~~~ 1211 (1258)
.....+++|||++ .+|+|..- ++..++..|..|
T Consensus 231 ~~~~~~~~p~IIHf~g--~~KPW~~~~~~~~~~~~~~~~ 267 (280)
T cd06431 231 QCYRDVSDLKVIHWNS--PKKLRVKNKHVEFFRNLYLTF 267 (280)
T ss_pred HhhcCcCCCEEEEeCC--CCCCCCcCCCChHHHHHHHHH
Confidence 1135789999997 34666422 233444445444
No 7
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=5.6e-34 Score=318.47 Aligned_cols=233 Identities=21% Similarity=0.298 Sum_probs=191.4
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCC-CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR- 1028 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~-~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r- 1028 (1258)
|||+++ +|.+|..++++++.|+++|++ .+++|||++++++++.++.|+++...++..++++.++++.+...+....+
T Consensus 1 ~~I~~~-~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 79 (248)
T cd04194 1 MNIVFA-IDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHI 79 (248)
T ss_pred CCEEEE-ecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccc
Confidence 689974 677999999999999999988 68999999999999999999999888899999999986544332212223
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccCCCCCce
Q 000842 1029 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYH 1108 (1258)
Q Consensus 1029 ~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l~~~~Yf 1108 (1258)
...+|+|||+|.+|| +++||||||+|+||.+||.+||++|++|+++||++||..... . .++ .........+||
T Consensus 80 ~~~~y~rl~l~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~--~--~~~--~~~~~~~~~~yf 152 (248)
T cd04194 80 SYATYYRLLIPDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQE--K--KRK--RRLGGYDDGSYF 152 (248)
T ss_pred cHHHHHHHHHHHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHH--H--HHH--hhcCCCccccee
Confidence 338999999999999 899999999999999999999999999999999999853110 0 000 001112346899
Q ss_pred ecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCcccccCCccccccCccCcc-----------
Q 000842 1109 ISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNA----------- 1177 (1258)
Q Consensus 1109 NSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~~~~----------- 1177 (1258)
||||||+|+.+||+.++.+++++++++ .+.++.++|||+||.+|.+ .|..||.+||++..++...
T Consensus 153 NsGv~l~nl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQd~LN~~~~~-~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~ 228 (248)
T cd04194 153 NSGVLLINLKKWREENITEKLLELIKE---YGGRLIYPDQDILNAVLKD-KILYLPPRYNFQTGFYYLLKKKSKEEQELE 228 (248)
T ss_pred eecchheeHHHHHHhhhHHHHHHHHHh---CCCceeeCChHHHHHHHhC-CeEEcCcccccchhHhHHhhccchhHHHHH
Confidence 999999999999999999999999884 4556889999999999996 7999999999998876432
Q ss_pred -ccCCCeEEEccCCCCCCChh
Q 000842 1178 -TKSKAKTIDLCNNPMTKEPK 1197 (1258)
Q Consensus 1178 -~~~~akii~~~~np~~k~~~ 1197 (1258)
..+.++|||||+. .|+|.
T Consensus 229 ~~~~~~~iiHf~g~--~KPW~ 247 (248)
T cd04194 229 EARKNPVIIHYTGS--DKPWN 247 (248)
T ss_pred HHhcCCEEEEeCCC--CCCCC
Confidence 3568999999985 36663
No 8
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=1.7e-33 Score=316.08 Aligned_cols=263 Identities=18% Similarity=0.277 Sum_probs=193.8
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCC-CChhHHHHHHHHHhhcCcEE--EEEEecCCcccccccccc
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNY-LSPQFKDVIPHMAQEYGFEY--ELITYKWPTWLHKQKEKQ 1027 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~-ls~~~~~~l~~l~~~~~~~i--~~v~~~wp~~l~~~~~~~ 1027 (1258)
|||..|+||+. .+.+.+||+|++.|+..+++|||++++ +++++++++.++...++..+ .++.+.+|..-.... +.
T Consensus 1 ~~~~vv~~g~~-~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~w-s~ 78 (304)
T cd06430 1 MHLAVVACGER-LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEW-KK 78 (304)
T ss_pred CEEEEEEcCCc-HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhh-hh
Confidence 57888889977 789999999999998889999999987 89999999999977654433 666666664210000 11
Q ss_pred cH-HHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhc--CCCCC-eEEEeeccCCCCCCCCccccccchhhccCC
Q 000842 1028 RI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKGR-PLAYTPFCDNNKDMDGYRFWRQGFWKDHLR 1103 (1258)
Q Consensus 1028 r~-~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~--dl~~~-~~aav~d~~~~~~~~g~~~w~~gyw~~~l~ 1103 (1258)
.. ..+|+|||+|.+|| ++|||||||||+||.+||+|||++ |+++. .+|++++.... . ..|...+......
T Consensus 79 l~~~~~y~RL~ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~----~-~~~~~~~~~~~~~ 152 (304)
T cd06430 79 LFKPCAAQRLFLPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEP----N-IGWYNRFARHPYY 152 (304)
T ss_pred cccHHHHHHHHHHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEeccccc----c-hhhhhhhcccCcc
Confidence 11 27899999999999 899999999999999999999999 99886 55555653210 0 1121111111112
Q ss_pred CCCceecceeeeehHHHHh-----------hcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCc--ccccCCccccc
Q 000842 1104 GRPYHISALYVVDLKRFRE-----------TAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWC 1170 (1258)
Q Consensus 1104 ~~~YfNSGv~liNL~~~R~-----------~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~--I~~Lp~~wN~~ 1170 (1258)
+..|||||||||||++||+ .++.+++++++++ +...+.++|||+||.++++.| ++.||++||++
T Consensus 153 ~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~DQDiLN~v~~~~p~~~~~Lp~~wN~~ 229 (304)
T cd06430 153 GKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKK---YKLKITWGDQDLINIIFHHNPEMLYVFPCHWNYR 229 (304)
T ss_pred cccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHh---cccCCCCCCHHHHHHHHcCCCCeEEEcCccccCC
Confidence 3467999999999999999 7889999999984 456788999999999999754 88999999987
Q ss_pred cCccC------ccccCCCeEEEccCCCC--CCChhhHHhhhcccCCchhhHHHHHHHHHhcc
Q 000842 1171 ESWCG------NATKSKAKTIDLCNNPM--TKEPKLQGARRIVSEWPDLDSEARQFTAKILG 1224 (1258)
Q Consensus 1171 ~~~~~------~~~~~~akii~~~~np~--~k~~~l~~a~r~~~~w~~~d~~~~~~~~~~~~ 1224 (1258)
.+.|. ....+.+++||+..-.. .|.|-+.+.+..+.++..-+..-++++..+..
T Consensus 230 ~d~~~y~~~~~~~~~~~~~~~H~n~~~~~~~~~~~f~~~~~~~~~~~~g~~~~~~~~~~l~~ 291 (304)
T cd06430 230 PDHCMYGSNCKAAEEEGVFILHGNRGVYHSDKQPAFRAVYEAIREYTFGDDLHQSLLRPLEL 291 (304)
T ss_pred ccceeecccccccccccceEEEcCCCCCCCccchHHHHHHHHHHhcccccchHHHhHHHHHH
Confidence 66552 22346789999864222 36666666666666655555666677777643
No 9
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.4e-33 Score=315.02 Aligned_cols=239 Identities=19% Similarity=0.174 Sum_probs=195.4
Q ss_pred eeeEEEEecCcchHHHHHHHHHHHHHcCCC-CeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccc-ccc
Q 000842 950 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK-EKQ 1027 (1258)
Q Consensus 950 ~InIf~va~~~~Y~~~~~v~i~Sil~n~~~-~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~-~~~ 1027 (1258)
+|||+. |.|++|..+++++|+|++.|++. .++||+|.++++++++++|.++++.++..+.++.++ -+.+.... ...
T Consensus 2 ~~~Iv~-a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id-~~~~~~~~~~~~ 79 (325)
T COG1442 2 TIPIAF-AFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVID-IEPFLDYPPFTK 79 (325)
T ss_pred cccEEE-EcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEe-chhhhccccccc
Confidence 589987 68889999999999999999996 899999999999999999999999999888877776 23333322 345
Q ss_pred cHH-HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhcc--CCC
Q 000842 1028 RII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDH--LRG 1104 (1258)
Q Consensus 1028 r~~-~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~--l~~ 1104 (1258)
|.+ .+|+|+|++++||+ .||+||+|+|+||.||+++||+++++++++|||.|+.+.. |.++--+.. ...
T Consensus 80 ~~s~~v~~R~fiadlf~~-~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~-------~~~~~~~~~~~~~~ 151 (325)
T COG1442 80 RFSKMVLVRYFLADLFPQ-YDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHY-------MKEGALRLEKGDLE 151 (325)
T ss_pred chHHHHHHHHHHHHhccc-cCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhh-------hhhhhhHhhhcccc
Confidence 555 89999999999996 5999999999999999999999999999999999975422 111110111 124
Q ss_pred CCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCcccccCCccccccCccC-------cc
Q 000842 1105 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCG-------NA 1177 (1258)
Q Consensus 1105 ~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~~-------~~ 1177 (1258)
..||||||+++|++.||++++.+++.+... ...+.+.++|||+||.+|.+ ++..||.+||++.+.-. ..
T Consensus 152 ~~yFNaG~llinl~~W~~~~i~~k~i~~~~---~~~~~~~~~DQdiLN~i~~~-~~~~L~~~YN~~~~~~~~~~~~~~~~ 227 (325)
T COG1442 152 GSYFNAGVLLINLKLWREENIFEKLIELLK---DKENDLLYPDQDILNMIFED-RVLELPIRYNAIPYIDSQLKDKYIYP 227 (325)
T ss_pred cccCccceeeehHHHHHHhhhHHHHHHHHh---ccccccCCccccHHHHHHHh-hhhccCcccceeehhhhccchhhhcc
Confidence 689999999999999999999999999986 33468999999999999996 99999999999854321 33
Q ss_pred ccCCCeEEEccCCCCCCChhhHHhhhc
Q 000842 1178 TKSKAKTIDLCNNPMTKEPKLQGARRI 1204 (1258)
Q Consensus 1178 ~~~~akii~~~~np~~k~~~l~~a~r~ 1204 (1258)
....+-++|||+ .+|+|+...+.+.
T Consensus 228 ~~~~~~iiHy~g--~~KPW~~~~~~~~ 252 (325)
T COG1442 228 FGDDPVILHYAG--PTKPWHSDSSNYP 252 (325)
T ss_pred CCCCceEEEecC--CCCCCcCcccccc
Confidence 456777999998 4588877775554
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=1.2e-32 Score=306.84 Aligned_cols=227 Identities=15% Similarity=0.155 Sum_probs=179.2
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccc-----
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ----- 1023 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~--~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~----- 1023 (1258)
+||++ ++| +|. .+++++.|++.|++ .+++|||+++++|.+.++.+......++.+|+++.++ +..+...
T Consensus 1 ~hiv~-~~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~-~~~~~~~~~~~~ 76 (257)
T cd06429 1 IHVVI-FSD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFD-DFKLLGKVKVDS 76 (257)
T ss_pred CCEEE-Eec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeC-cHHhhcccccch
Confidence 57886 467 788 57888888888875 4899999999999888887777777779999999996 3322111
Q ss_pred ---------------cccccHH-HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCC
Q 000842 1024 ---------------KEKQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDM 1087 (1258)
Q Consensus 1024 ---------------~~~~r~~-~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~ 1087 (1258)
....+.. .+|+||++|.+|| +++||||||||+||++||+|||++|++|+++|||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp-~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------- 148 (257)
T cd06429 77 LMQLESEADTSNLKQRKPEYISLLNFARFYLPELFP-KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------- 148 (257)
T ss_pred hhhhhccccccccccCCccccCHHHHHHHHHHHHhh-hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-------
Confidence 1112322 7999999999999 699999999999999999999999999999999964
Q ss_pred CCccccccchhhccCCCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCC-CCCCCCCCcHHhHhhccCcccccCCc
Q 000842 1088 DGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDP-NSLANLDQDLPNYAQHTVPIFSLPQE 1166 (1258)
Q Consensus 1088 ~g~~~w~~gyw~~~l~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~-~sl~~~DQDllN~~~~~~~I~~Lp~~ 1166 (1258)
|||||||||||++||++++++++..+++...... .....+|||++|.+|.+ .+..||++
T Consensus 149 -------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~-~~~~L~~~ 208 (257)
T cd06429 149 -------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYG-LTSPLDPS 208 (257)
T ss_pred -------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccC-eeEECChH
Confidence 7999999999999999999999999887432211 12456799999999995 89999999
Q ss_pred cccccC-ccC---ccccCCCeEEEccCCCCCCChhhHHhhhcccCCchh
Q 000842 1167 WLWCES-WCG---NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1211 (1258)
Q Consensus 1167 wN~~~~-~~~---~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~ 1211 (1258)
||.+.- +.. .+....++||||++ .+|+|.-..-.+..+.|+.|
T Consensus 209 wN~~~l~~~~~~~~~~~~~~~IIHy~G--~~KPW~~~~~~~~~~~w~~y 255 (257)
T cd06429 209 WHVRGLGYNYGIRPQDIKAAAVLHFNG--NMKPWLRTAIPSYKELWEKY 255 (257)
T ss_pred HcccCCcccccccccccCCcEEEEECC--CCCCcCCCCCChHHHHHHHH
Confidence 998731 111 22346889999998 46888766556667778765
No 11
>PLN02718 Probable galacturonosyltransferase
Probab=99.97 E-value=5.8e-31 Score=311.75 Aligned_cols=253 Identities=15% Similarity=0.178 Sum_probs=191.0
Q ss_pred cCceeeEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccc--
Q 000842 947 HGKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHK-- 1022 (1258)
Q Consensus 947 ~~~~InIf~va~~~~Y~~~~~v~i~Sil~n~~--~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~-- 1022 (1258)
+...+||+++ +| +| ..++|+|.|++.|++ ..++|||++++++...++.+..+...++..|+++.++--.|+..
T Consensus 310 d~~~~Hia~~-sD-Nv-laasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~ 386 (603)
T PLN02718 310 DPDLYHYVVF-SD-NV-LACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADY 386 (603)
T ss_pred CCcceeEEEE-cC-Cc-eeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccc
Confidence 3456999874 55 46 489999999999944 46999999999999999988888877799999999861123311
Q ss_pred ------c-ccc-ccH-HHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCC----CCCC
Q 000842 1023 ------Q-KEK-QRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNK----DMDG 1089 (1258)
Q Consensus 1023 ------~-~~~-~r~-~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~----~~~g 1089 (1258)
. ..+ .+. ..+|+||+||.+|| +++||||||+|+||++||.+||++||+|+++|||.||.... .+..
T Consensus 387 ~~~lk~l~s~~~~~~S~~~y~Rl~ipellp-~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~ 465 (603)
T PLN02718 387 NSLLMKQNSHDPRYISALNHARFYLPDIFP-GLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDT 465 (603)
T ss_pred hhhhhhccccccccccHHHHHHHHHHHHhc-ccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhh
Confidence 1 011 122 27999999999999 69999999999999999999999999999999999996311 1100
Q ss_pred ccccccchhh-ccC-CCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHh---HhhccCcccccC
Q 000842 1090 YRFWRQGFWK-DHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPN---YAQHTVPIFSLP 1164 (1258)
Q Consensus 1090 ~~~w~~gyw~-~~l-~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN---~~~~~~~I~~Lp 1164 (1258)
+..|. ..|- ..+ +..+|||+|||||||++||++++++++..+++. +... ...|||.|| .+|.+ .++.||
T Consensus 466 ~lnfs-~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~---n~~~-~l~dqdaLpp~LlvF~g-ri~~LD 539 (603)
T PLN02718 466 FINFS-DPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQL---GVKR-PLWKAGSLPIGWLTFYN-QTVALD 539 (603)
T ss_pred hhhcc-chhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHh---ccCc-cccCcccccHHHHHhcC-ceeecC
Confidence 00000 0111 112 357999999999999999999999999999874 2333 457999998 78885 899999
Q ss_pred CccccccCcc----CccccCCCeEEEccCCCCCCChhhHHhhhcccCCchh
Q 000842 1165 QEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1211 (1258)
Q Consensus 1165 ~~wN~~~~~~----~~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~ 1211 (1258)
.+||.+.-.+ ..+..+.|.||||+++ .|+|.-....++.+-|..|
T Consensus 540 ~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~--~KPWle~~i~~yr~~W~k~ 588 (603)
T PLN02718 540 KRWHVLGLGHESGVGASDIEQAAVIHYDGV--MKPWLDIGIGKYKRYWNIH 588 (603)
T ss_pred hHHhccCccccccccccccCCCEEEEECCC--CCccccCChhhHHHHHHhh
Confidence 9999886332 3345688999999984 4666655556778888866
No 12
>PLN02523 galacturonosyltransferase
Probab=99.96 E-value=1.2e-29 Score=297.18 Aligned_cols=251 Identities=16% Similarity=0.219 Sum_probs=180.7
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCC-cccc----
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWP-TWLH---- 1021 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~~--~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp-~~l~---- 1021 (1258)
.-.|.+ |.++. ...++|+|.|++.|+++ ++.|||+++.++...+...-.+....+..|++..++ . .|+.
T Consensus 247 ~l~Hy~-ifSdN--vlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Ie-df~~ln~~~~ 322 (559)
T PLN02523 247 SLYHYA-IFSDN--VIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVE-DYKFLNSSYV 322 (559)
T ss_pred CcceEE-EecCc--chhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEee-hhhhcccccc
Confidence 336665 45664 67899999999999774 599999999999877776666665558888888775 2 2333
Q ss_pred c---ccc-----------------------c----ccHH-HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCC
Q 000842 1022 K---QKE-----------------------K----QRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDI 1070 (1258)
Q Consensus 1022 ~---~~~-----------------------~----~r~~-~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl 1070 (1258)
+ +.+ + ...+ .+|+||+||++|| +++||||||+|+||++||++||++||
T Consensus 323 pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP-~ldKVLYLD~DVVVq~DLseLw~iDL 401 (559)
T PLN02523 323 PVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYP-KLHRILFLDDDVVVQKDLTGLWKIDM 401 (559)
T ss_pred hHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEecCCHHHHHhCcC
Confidence 0 000 0 1122 7999999999999 69999999999999999999999999
Q ss_pred CCCeEEEeeccCCC-CCCCCccccccchhhccC-CCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCC
Q 000842 1071 KGRPLAYTPFCDNN-KDMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQ 1148 (1258)
Q Consensus 1071 ~~~~~aav~d~~~~-~~~~g~~~w~~gyw~~~l-~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQ 1148 (1258)
+|+++|||.||... .+......+....-++.+ .+.||||+|||||||++||++++++++ .+++.+.. .....||
T Consensus 402 ~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~-~~w~~ln~---~~~l~Dq 477 (559)
T PLN02523 402 DGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQY-HYWQNLNE---NRTLWKL 477 (559)
T ss_pred CCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHH-HHHHHhcc---ccccccc
Confidence 99999999999421 100000000000001122 346888889999999999999999998 46665522 2456899
Q ss_pred cHHh---HhhccCcccccCCccccccCc----cCccccCCCeEEEccCCCCCCChhhHHhhhcccCCchh
Q 000842 1149 DLPN---YAQHTVPIFSLPQEWLWCESW----CGNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1211 (1258)
Q Consensus 1149 DllN---~~~~~~~I~~Lp~~wN~~~~~----~~~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~ 1211 (1258)
|.|| .+|.+ .+++||++||++.-. .+.+..+.|.||||+++ .|+|.--.-.++.+.|+.|
T Consensus 478 daLpp~LivF~g-ri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~--~KPWle~~i~~yr~~W~kY 544 (559)
T PLN02523 478 GTLPPGLITFYS-TTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGN--MKPWLDIAMNQFKPLWTKY 544 (559)
T ss_pred cccchHHHHhcC-ceEecCchhhccCCccCCCccccccCCCEEEEECCC--CCccccCCCCcchHHHHHH
Confidence 9996 67774 899999999987532 23445678999999985 4777543335566778765
No 13
>PLN02742 Probable galacturonosyltransferase
Probab=99.94 E-value=5.3e-27 Score=275.03 Aligned_cols=261 Identities=15% Similarity=0.196 Sum_probs=183.0
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccc---
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ--- 1023 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~~~--v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~--- 1023 (1258)
...+=+.+.||. .--+.+.|.|.+.|++++ +.|||+++..+-.-+...-....--+..+++++++==.|+...
T Consensus 225 ~~l~Hy~ifSdN--vlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~p 302 (534)
T PLN02742 225 NNLYHFCVFSDN--ILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVP 302 (534)
T ss_pred CCcceEEEEecc--chhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccch
Confidence 334445566775 446789999999999865 9999999877655443333333333778888888511344320
Q ss_pred ------------------------cc----cccH-HHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCe
Q 000842 1024 ------------------------KE----KQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRP 1074 (1258)
Q Consensus 1024 ------------------------~~----~~r~-~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~ 1074 (1258)
.. ..+. ..+|.||+||.+|| +++||||||+|+||++||.+||++||+|++
T Consensus 303 vl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp-~l~KvlYLD~DvVV~~DL~eL~~~DL~~~v 381 (534)
T PLN02742 303 VLKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYP-ALEKVVFLDDDVVVQKDLTPLFSIDLHGNV 381 (534)
T ss_pred HHHHhhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhh-ccCeEEEEeCCEEecCChHHHhcCCCCCCE
Confidence 00 1111 27999999999999 699999999999999999999999999999
Q ss_pred EEEeeccCCC-CCCCCccccccchhhccC-CCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHh
Q 000842 1075 LAYTPFCDNN-KDMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPN 1152 (1258)
Q Consensus 1075 ~aav~d~~~~-~~~~g~~~w~~gyw~~~l-~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN 1152 (1258)
+|||+||... ++..++-.|.....+..+ ++.+|||+|||||||++||++++++.+ .+++++ .......||+.+|
T Consensus 382 iaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~-~~w~e~---n~~~~l~d~gaLp 457 (534)
T PLN02742 382 NGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIY-HYWQEQ---NVDRTLWKLGTLP 457 (534)
T ss_pred EEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHH-HHHHHh---ccccccccccccc
Confidence 9999999521 111111111111111222 357999999999999999999999944 455643 2234557999999
Q ss_pred Hh---hccCcccccCCccccccCcc----CccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHH
Q 000842 1153 YA---QHTVPIFSLPQEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFT 1219 (1258)
Q Consensus 1153 ~~---~~~~~I~~Lp~~wN~~~~~~----~~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~d~~~~~~~ 1219 (1258)
.+ |.+ .+++||.+||.+.-.+ +.+..+.|.||||+++ .|+|.-....++.+.|..|.+--..++
T Consensus 458 p~LLaF~g-~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~--~KPWl~~~i~~yr~~W~kYl~~s~~fl 528 (534)
T PLN02742 458 PGLLTFYG-LTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGN--MKPWLKLAIERYKPLWERYVNYSHPYL 528 (534)
T ss_pred hHHHHHcC-cceecChhheecccccccccchhhccCCeEEEECCC--CCcccccCCcccchHHHHHHccCCHHH
Confidence 64 674 8999999999975322 2346689999999985 366655555688899998865444444
No 14
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.94 E-value=1.9e-27 Score=264.02 Aligned_cols=231 Identities=23% Similarity=0.285 Sum_probs=165.1
Q ss_pred eEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccc----ccccc
Q 000842 952 NIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWL----HKQKE 1025 (1258)
Q Consensus 952 nIf~va~~~~Y~~~~~v~i~Sil~n~~--~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l----~~~~~ 1025 (1258)
||+. ++|.+|..++.+++.|+++|++ ..++||+++++++++.++.|......+.....+.... ...+ .....
T Consensus 1 ~i~~-~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (250)
T PF01501_consen 1 HIVL-ACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPD-ISMLEEFQFNSPS 78 (250)
T ss_dssp -EEE-ECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETS-GGHHH--TTS-HC
T ss_pred CEEE-EeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccch-HHhhhhhhhcccc
Confidence 5776 5778999999999999999998 5799999999999999999988776553322222221 1111 11122
Q ss_pred cccHH-HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhc---c
Q 000842 1026 KQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKD---H 1101 (1258)
Q Consensus 1026 ~~r~~-~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~---~ 1101 (1258)
..+.. .+|.||+++.+|| ++|||||||+|++|.+||.+||+++++|+++||++++... .++...++.. .
T Consensus 79 ~~~~~~~~~~rl~i~~ll~-~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~~ 151 (250)
T PF01501_consen 79 KRHFSPATFARLFIPDLLP-DYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFD------NFPNKRFPFSERKQ 151 (250)
T ss_dssp CTCGGGGGGGGGGHHHHST-TSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----H------HHHTSTTSSEEECE
T ss_pred cccccHHHHHHhhhHHHHh-hcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhh------hhhhcccchhhccc
Confidence 23332 7899999999996 7999999999999999999999999999999999883210 1111111111 1
Q ss_pred CCCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCcccccCCccccccCcc------C
Q 000842 1102 LRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC------G 1175 (1258)
Q Consensus 1102 l~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~------~ 1175 (1258)
.....||||||||+|+++||+.++.++++.+++. +...+.+.|||++|.++.+ ++..||.+||++..++ .
T Consensus 152 ~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~DQ~~ln~~~~~-~~~~L~~~~N~~~~~~~~~~~~~ 227 (250)
T PF01501_consen 152 PGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQ---NGMKLGFPDQDILNIVFYG-NIKPLPCRYNCQPSWYNQSDDYF 227 (250)
T ss_dssp STTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHH---TTTT-SSCHHHHHHHHHTT-GEEEEEGGGSEEHHHHHHTHHHH
T ss_pred CcccccccCcEEEEeechhhhhhhhhhhhhhhhh---cccccCcCchHHHhhhccc-eeEEECchhccccccccccchhh
Confidence 2357999999999999999999999999999773 4446788999999999995 9999999999998877 2
Q ss_pred ccccCCCeEEEccCCCCCCChh
Q 000842 1176 NATKSKAKTIDLCNNPMTKEPK 1197 (1258)
Q Consensus 1176 ~~~~~~akii~~~~np~~k~~~ 1197 (1258)
....+.+++|||++ ..|+|+
T Consensus 228 ~~~~~~~~iiHy~g--~~KPW~ 247 (250)
T PF01501_consen 228 NPILEDAKIIHYSG--PPKPWK 247 (250)
T ss_dssp HHHGCC-SEEE--S--SS-TTS
T ss_pred HhhcCCeEEEEeCC--CCcCCC
Confidence 34568899999998 347664
No 15
>PLN02829 Probable galacturonosyltransferase
Probab=99.94 E-value=3.9e-27 Score=278.15 Aligned_cols=260 Identities=16% Similarity=0.207 Sum_probs=174.5
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccc------
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHK------ 1022 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~--~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~------ 1022 (1258)
.+=+.+.||. .--+.|.+.|-+.|.++ ++.|||+++.++=.-+..--.+...-+..|+..++.==.|+..
T Consensus 331 l~Hy~ifSdN--VLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl 408 (639)
T PLN02829 331 LYHYALFSDN--VLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVL 408 (639)
T ss_pred cceEEEEecc--eeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHH
Confidence 3334455664 22356778888888774 5888998877654322211112222255666555520011111
Q ss_pred -c------------------------cccccHH-HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEE
Q 000842 1023 -Q------------------------KEKQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLA 1076 (1258)
Q Consensus 1023 -~------------------------~~~~r~~-~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~a 1076 (1258)
| +...+.+ .+|+|||||.+|| +++||||||+|+||++||++||++||+|+++|
T Consensus 409 ~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviA 487 (639)
T PLN02829 409 KQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNG 487 (639)
T ss_pred HHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceEE
Confidence 0 0011122 6899999999999 79999999999999999999999999999999
Q ss_pred EeeccCCC-CCCCCccccccchhhccC-CCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHh
Q 000842 1077 YTPFCDNN-KDMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYA 1154 (1258)
Q Consensus 1077 av~d~~~~-~~~~g~~~w~~gyw~~~l-~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~ 1154 (1258)
||.||... .+...+-+|........+ +..+|||||||||||++||+.++++++..+++ + +..... .||+.||.+
T Consensus 488 AVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~-~--n~~r~L-~dlgaLPp~ 563 (639)
T PLN02829 488 AVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQK-L--NHDRQL-WKLGTLPPG 563 (639)
T ss_pred EeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHH-H--ccCCcc-ccccCCChH
Confidence 99999642 111111112111111222 35689999999999999999999999998875 3 223333 699999987
Q ss_pred h---ccCcccccCCccccccCccCc----cccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHHHHHHHH
Q 000842 1155 Q---HTVPIFSLPQEWLWCESWCGN----ATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQFTA 1220 (1258)
Q Consensus 1155 ~---~~~~I~~Lp~~wN~~~~~~~~----~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~d~~~~~~~~ 1220 (1258)
+ . +.+++|+.+||.+.-.+.. +..+.|.||||+++. |+|.-....++.+.|..|.+--..+++
T Consensus 564 Ll~F~-g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~--KPWle~~i~~yr~lW~kYl~~~~~fl~ 633 (639)
T PLN02829 564 LITFW-KRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNM--KPWLEIGIPKYRNYWSKYVDYDQVYLR 633 (639)
T ss_pred HHHhc-CceEecChhheecCCCCCcccchhcccCCeEEEECCCC--CccccCCcccchHHHHHHHhcCchHHH
Confidence 4 6 4899999999998754432 356889999999854 666555556788899988665444443
No 16
>PLN02769 Probable galacturonosyltransferase
Probab=99.94 E-value=4.2e-27 Score=280.23 Aligned_cols=252 Identities=17% Similarity=0.214 Sum_probs=173.8
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHH-HHHHHHHhhcCcEEEEEEe---cCCc----
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFK-DVIPHMAQEYGFEYELITY---KWPT---- 1018 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~--~~v~f~il~~~ls~~~~-~~l~~l~~~~~~~i~~v~~---~wp~---- 1018 (1258)
....=+.+.||. .--+.+.|.|.+.|++ .++.|||+++..+-.-+ .++.. ..--+..|+..++ +|..
T Consensus 328 ~~l~Hy~ifSdN--vlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~-n~~~~a~v~v~n~e~~~~~~~~~~ 404 (629)
T PLN02769 328 PSLRHYVIFSKN--VLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDR-NSYKEAAVQVLNIEDLILKDLDKF 404 (629)
T ss_pred CccceEEEEecc--ceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhc-CCCccceEEEeeeeeeeecccchH
Confidence 334445556775 3346789999999988 57999999987654322 22211 1111445554444 3421
Q ss_pred ccc-------------c-------ccccccHH-HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEE
Q 000842 1019 WLH-------------K-------QKEKQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAY 1077 (1258)
Q Consensus 1019 ~l~-------------~-------~~~~~r~~-~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aa 1077 (1258)
.++ . +....+.+ .+|.|||||.+|| +++||||||+|+||++||++||++||+|+++||
T Consensus 405 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAA 483 (629)
T PLN02769 405 ALKQLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFK-KLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGA 483 (629)
T ss_pred HHHhhccchhhhhhhccCCCCchhccCcccccHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEE
Confidence 000 0 00011122 7999999999999 799999999999999999999999999999999
Q ss_pred eeccCCCCCCCCccccccchhhccCCCCCceecceeeeehHHHHhhcHHHHHHHHHHHhcc-CCCCCCCCCCcHHhHhhc
Q 000842 1078 TPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSK-DPNSLANLDQDLPNYAQH 1156 (1258)
Q Consensus 1078 v~d~~~~~~~~g~~~w~~gyw~~~l~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~-~~~sl~~~DQDllN~~~~ 1156 (1258)
|.+|..+-...+ .|....+ ..+..+|||||||||||++||+.++++++..+++++.. +...+...+|+++|.+|.
T Consensus 484 Vedc~~rl~~~~-~yl~~~~---F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~ 559 (629)
T PLN02769 484 VQFCGVRLGQLK-NYLGDTN---FDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQ 559 (629)
T ss_pred ehhhhhhhhhhh-hhhcccC---CCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHhc
Confidence 999953211000 1111111 12357899999999999999999999999998876533 234455567888888999
Q ss_pred cCcccccCCccccccCc----cCccccCCCeEEEccCCCCCCChhhHHhhhcccCCchh
Q 000842 1157 TVPIFSLPQEWLWCESW----CGNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1211 (1258)
Q Consensus 1157 ~~~I~~Lp~~wN~~~~~----~~~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~ 1211 (1258)
+ .++.||.+||++.-. ...+..+.++||||+++ .|+|.-..-.++.+.|+.|
T Consensus 560 g-~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~--~KPW~e~~i~~yr~~W~kY 615 (629)
T PLN02769 560 D-LIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGN--MKPWLELGIPKYKKYWKRF 615 (629)
T ss_pred C-eEEECCHHHccccccccccccccccCCcEEEEECCC--CCCccCCCCChHHHHHHHH
Confidence 5 899999999976321 23345679999999984 4777654445677888876
No 17
>PLN02659 Probable galacturonosyltransferase
Probab=99.94 E-value=4.4e-27 Score=275.08 Aligned_cols=172 Identities=19% Similarity=0.282 Sum_probs=133.4
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCC------CCCCCccccc--cchhhccC
Q 000842 1031 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNN------KDMDGYRFWR--QGFWKDHL 1102 (1258)
Q Consensus 1031 ~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~------~~~~g~~~w~--~gyw~~~l 1102 (1258)
.+|+||+||.+|| +++||||||+|+||++||++||++||+|+++|||+||... ++.. .|.. .....+.+
T Consensus 330 ~nY~RL~IPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~--~yL~~s~p~i~~yF 406 (534)
T PLN02659 330 MNHIRIHLPELFP-SLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLK--SYLNFSHPLIAKNF 406 (534)
T ss_pred HHHHHHHHHHHhh-hcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHH--Hhhcccchhhhhcc
Confidence 7999999999999 7999999999999999999999999999999999999521 0000 0000 00111223
Q ss_pred C-CCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCC-CCCCCCCCcHH---hHhhccCcccccCCccccccCccC--
Q 000842 1103 R-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDP-NSLANLDQDLP---NYAQHTVPIFSLPQEWLWCESWCG-- 1175 (1258)
Q Consensus 1103 ~-~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~-~sl~~~DQDll---N~~~~~~~I~~Lp~~wN~~~~~~~-- 1175 (1258)
. +.+|||||||||||++||++++++++..++++ +. ..+...|||+| |.+|.+ .++.||.+||+..-.+.
T Consensus 407 n~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~---n~~~~l~l~DQdaLp~~LivF~g-~v~~LD~rWN~~gLg~~~~ 482 (534)
T PLN02659 407 DPNECAWAYGMNIFDLEAWRKTNISSTYHHWLEE---NLKSDLSLWQLGTLPPGLIAFHG-HVHVIDPFWHMLGLGYQEN 482 (534)
T ss_pred CccccceecceeEeeHHHHHhcChHHHHHHHHHh---cccccccccccccchHHHHHhcC-CEEECChhheecCCccccc
Confidence 2 46899999999999999999999999999874 22 34677899999 577885 89999999998643221
Q ss_pred --ccccCCCeEEEccCCCCCCChhhHHhhhcccCCchh
Q 000842 1176 --NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1211 (1258)
Q Consensus 1176 --~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~ 1211 (1258)
.+..+.+.+|||+++ .|+|.-..-.++++.|..|
T Consensus 483 ~~~~~i~~paIIHYnG~--~KPW~~~~~~~yr~~W~kY 518 (534)
T PLN02659 483 TSLADAESAGVVHFNGR--AKPWLDIAFPQLRPLWAKY 518 (534)
T ss_pred ccccccCCcEEEEECCC--CCccccccCCcchhHHHHH
Confidence 224578999999984 5878766666777888866
No 18
>PLN02870 Probable galacturonosyltransferase
Probab=99.94 E-value=5.3e-27 Score=274.34 Aligned_cols=176 Identities=17% Similarity=0.279 Sum_probs=134.0
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCC------CCCCccccc--cchhhccC
Q 000842 1031 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNK------DMDGYRFWR--QGFWKDHL 1102 (1258)
Q Consensus 1031 ~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~------~~~g~~~w~--~gyw~~~l 1102 (1258)
.+|+||+||.+|| +++||||||+|+||++||++||++||+|+++|||.||.... +..+ |.. ....+..+
T Consensus 329 lny~Rl~LPelLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~--YfNfs~p~i~~~f 405 (533)
T PLN02870 329 LNHLRIYLPELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRN--YFNFSHPLIAKNL 405 (533)
T ss_pred HHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhh--hcccccchhhccc
Confidence 7999999999999 79999999999999999999999999999999999995310 1111 110 01111122
Q ss_pred -CCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHH---hHhhccCcccccCCccccccCcc----
Q 000842 1103 -RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLP---NYAQHTVPIFSLPQEWLWCESWC---- 1174 (1258)
Q Consensus 1103 -~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDll---N~~~~~~~I~~Lp~~wN~~~~~~---- 1174 (1258)
++.+|||||||||||++||++++++++..++++. ....+.+.|||+| |.+|.+ .++.||.+||++.--+
T Consensus 406 d~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n--~~~~l~l~DQdaLp~~livf~g-~v~~LD~rWN~~gLgy~~~~ 482 (533)
T PLN02870 406 DPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKEN--LKSNLTMWKLGTLPPALIAFKG-HVHPIDPSWHMLGLGYQSKT 482 (533)
T ss_pred CcccceeeccchhccHHHHHHcChHHHHHHHHHhh--hhcCceecccccccHhHHHhcC-ceEECChHHhcCCCCCcccc
Confidence 3579999999999999999999999999998742 1234677899999 577774 8999999999875322
Q ss_pred CccccCCCeEEEccCCCCCCChhhHHhhhcccCCchhhHH
Q 000842 1175 GNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSE 1214 (1258)
Q Consensus 1175 ~~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~d~~ 1214 (1258)
..+..+.|+||||+++ .|+|.-....++.+.|..|-+-
T Consensus 483 ~~~~i~~aaIIHY~G~--~KPW~~~~~~~yr~~W~kYl~~ 520 (533)
T PLN02870 483 NIESVKKAAVIHYNGQ--SKPWLEIGFEHLRPFWTKYVNY 520 (533)
T ss_pred cccccCCcEEEEECCC--CCCccccCccchhHHHHHHHcc
Confidence 1234578999999984 5888655555567778877443
No 19
>PLN02867 Probable galacturonosyltransferase
Probab=99.94 E-value=1.3e-26 Score=272.41 Aligned_cols=172 Identities=19% Similarity=0.308 Sum_probs=131.9
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeec--cCCCCCCCCccccccchh-------hcc
Q 000842 1031 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPF--CDNNKDMDGYRFWRQGFW-------KDH 1101 (1258)
Q Consensus 1031 ~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d--~~~~~~~~g~~~w~~gyw-------~~~ 1101 (1258)
.+|+||+||++|| +++||||||+|+||++||++||++||+|+++|||.| |.... ..+.++ ..|. ...
T Consensus 331 lnYlRflIPeLLP-~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~-~~~~~~--~~YlNfsnp~i~~~ 406 (535)
T PLN02867 331 LNHLRIYIPELFP-DLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNC-CPGRKY--KDYLNFSHPLISSN 406 (535)
T ss_pred HHHHHHHHHHHhh-ccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEecccccccc-ccchhh--hhhccccchhhhcc
Confidence 6999999999999 799999999999999999999999999999999976 43110 011111 0111 111
Q ss_pred C-CCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhH---hhccCcccccCCccccccC-----
Q 000842 1102 L-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNY---AQHTVPIFSLPQEWLWCES----- 1172 (1258)
Q Consensus 1102 l-~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~---~~~~~~I~~Lp~~wN~~~~----- 1172 (1258)
+ ++.+|||||||||||++||++++++++..+++.. ....+...|||.||. +|.+ .++.||.+||++.-
T Consensus 407 ~~p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~n--~~~~~~l~dqd~LN~~LlvF~g-~v~~LD~rWNv~gLgy~~~ 483 (535)
T PLN02867 407 LDQERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLS--LNSGLQLWQPGALPPALLAFKG-HVHPIDPSWHVAGLGSRPP 483 (535)
T ss_pred CCCCCcceecceeeeeHHHHHHhcHHHHHHHHHHhc--hhcccccccccccchHHHHhcC-cEEECChhhcccCCCcccc
Confidence 2 3578999999999999999999999999998732 112245579999996 7774 89999999998542
Q ss_pred ccCccccCCCeEEEccCCCCCCChhhHHhhhcccCCchh
Q 000842 1173 WCGNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1211 (1258)
Q Consensus 1173 ~~~~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~ 1211 (1258)
+...+..+.++||||+++ .|+|+-....++++.|..|
T Consensus 484 ~~~~~~i~~paIIHYnG~--~KPW~e~~~~~yR~~W~ky 520 (535)
T PLN02867 484 EVPREILESAAVLHFSGP--AKPWLEIGFPEVRSLWYRH 520 (535)
T ss_pred cchhhhcCCcEEEEECCC--CCcccccCCCchhHHHHHh
Confidence 122234578999999984 5888877778888889755
No 20
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=99.93 E-value=1.1e-25 Score=265.38 Aligned_cols=252 Identities=15% Similarity=0.210 Sum_probs=170.4
Q ss_pred eeeEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEe---cCCc-----c
Q 000842 950 TINIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY---KWPT-----W 1019 (1258)
Q Consensus 950 ~InIf~va~~~~Y~~~~~v~i~Sil~n~~~--~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~---~wp~-----~ 1019 (1258)
..+=+.+.||. .--+.|.+.|-+.|.++ ++.|||+++.++=.-+..--.+...-+..|+..++ +|-. .
T Consensus 344 ~l~Hy~ifSDN--VLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pv 421 (657)
T PLN02910 344 SLYHYAIFSDN--VLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSV 421 (657)
T ss_pred cceeEEEEecc--eeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHH
Confidence 34444455665 22356788888888774 68899999876543222111111122455655544 2311 0
Q ss_pred ccc-----------------------cccccc----HH-HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCC
Q 000842 1020 LHK-----------------------QKEKQR----II-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIK 1071 (1258)
Q Consensus 1020 l~~-----------------------~~~~~r----~~-~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~ 1071 (1258)
++. ...+.| .+ .+|+||+||.+|| +++||||||+|+||++||.+||++||+
T Consensus 422 l~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp-~l~KVLYLD~DVVV~gDLseLw~iDL~ 500 (657)
T PLN02910 422 LRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYP-KLEKILFLDDDIVVQKDLTPLWSIDMQ 500 (657)
T ss_pred HHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCchHHHHhCCcC
Confidence 100 000111 22 7899999999999 699999999999999999999999999
Q ss_pred CCeEEEeeccCCC-CCCCCccccccchhhccC-CCCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCc
Q 000842 1072 GRPLAYTPFCDNN-KDMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQD 1149 (1258)
Q Consensus 1072 ~~~~aav~d~~~~-~~~~g~~~w~~gyw~~~l-~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQD 1149 (1258)
|+++|||++|... .+......|....-+..+ +..||||+|||||||++||+.++++ +..+++++ .......||+
T Consensus 501 g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe-~ye~w~el---n~~~~L~dqg 576 (657)
T PLN02910 501 GMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDL---NEDRTLWKLG 576 (657)
T ss_pred CceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHH-HHHHHHHh---cccccccccC
Confidence 9999999999642 111111112111112223 3579999999999999999999999 66677754 2345667999
Q ss_pred HHh---HhhccCcccccCCccccccCcc----CccccCCCeEEEccCCCCCCChhhHHhhhcccCCchh
Q 000842 1150 LPN---YAQHTVPIFSLPQEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1211 (1258)
Q Consensus 1150 llN---~~~~~~~I~~Lp~~wN~~~~~~----~~~~~~~akii~~~~np~~k~~~l~~a~r~~~~w~~~ 1211 (1258)
.|| .+|.+ .+++||.+||.+.-.+ ..+..+.|.+|||+++. |+|.-....++.+.|..|
T Consensus 577 sLPpgLLvF~g-~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~--KPWl~l~i~~Yr~~W~kY 642 (657)
T PLN02910 577 SLPPGLITFYN-LTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNY--KPWLDLAIAKYKPYWSRY 642 (657)
T ss_pred CCChHHHHHhC-ceeecCchheecCCCCCcccccccccCcEEEEeCCCC--CcccccCcccchHHHHHH
Confidence 999 57775 8999999999986433 23457889999999864 655444456778888866
No 21
>PLN00176 galactinol synthase
Probab=99.86 E-value=4.6e-21 Score=219.16 Aligned_cols=243 Identities=15% Similarity=0.174 Sum_probs=155.3
Q ss_pred ecCcchHHHHHHHHHHHHHcCCCCeEEEEE-eCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHH
Q 000842 957 ASGHLYERFLKIMILSVLKNTCRPVKFWFI-KNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKI 1035 (1258)
Q Consensus 957 a~~~~Y~~~~~v~i~Sil~n~~~~v~f~il-~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~R 1035 (1258)
++++.|...+.++.+||.++. +...+.++ +++++++.++.|.+ .++.+.-+..--|..-..+....+...+|.|
T Consensus 30 ~~n~~Y~~Ga~vL~~SLr~~~-s~~~lVvlVt~dVp~e~r~~L~~----~g~~V~~V~~i~~~~~~~~~~~~~~~i~~tK 104 (333)
T PLN00176 30 AGNGDYVKGVVGLAKGLRKVK-SAYPLVVAVLPDVPEEHRRILVS----QGCIVREIEPVYPPENQTQFAMAYYVINYSK 104 (333)
T ss_pred ecCcchHHHHHHHHHHHHHhC-CCCCEEEEECCCCCHHHHHHHHH----cCCEEEEecccCCcccccccccchhhhhhhh
Confidence 456789999999999998763 34554443 48899988776653 3555543322112110001111223356789
Q ss_pred HhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCC-CCccccccch---------hhccCC--
Q 000842 1036 LFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDM-DGYRFWRQGF---------WKDHLR-- 1103 (1258)
Q Consensus 1036 LfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~-~g~~~w~~gy---------w~~~l~-- 1103 (1258)
|++..+. +++||||||+|++|.++|++||+++. ..+|||.||...+.. ...++|- || |...++
T Consensus 105 l~iw~l~--~ydkvlyLDaD~lv~~nid~Lf~~~~--~~~aAV~dc~~~~~~~~~p~~~~-~~c~~~~~~~~wp~~~g~~ 179 (333)
T PLN00176 105 LRIWEFV--EYSKMIYLDGDIQVFENIDHLFDLPD--GYFYAVMDCFCEKTWSHTPQYKI-GYCQQCPDKVTWPAELGPP 179 (333)
T ss_pred hhhcccc--ccceEEEecCCEEeecChHHHhcCCC--cceEEEecccccccccccccccc-cccccchhhccchhhccCC
Confidence 9999976 69999999999999999999998853 368999998532110 0011221 22 222222
Q ss_pred CCCceecceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCcccccCCccccccC--ccCcc--cc
Q 000842 1104 GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCES--WCGNA--TK 1179 (1258)
Q Consensus 1104 ~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~--~~~~~--~~ 1179 (1258)
...||||||||+|+..|+.+.+. ++++. .+ ...++|||+||.+|.+ .+..||.+||++.. |+..+ ..
T Consensus 180 ~~~yFNSGVlvinps~~~~~~ll----~~l~~---~~-~~~f~DQD~LN~~F~~-~~~~Lp~~YN~~~~~~~~~~~~~~~ 250 (333)
T PLN00176 180 PPLYFNAGMFVFEPSLSTYEDLL----ETLKI---TP-PTPFAEQDFLNMFFRD-IYKPIPPVYNLVLAMLWRHPENVEL 250 (333)
T ss_pred CCCeEEeEEEEEEcCHHHHHHHH----HHHHh---cC-CCCCCCHHHHHHHHcC-cEEECCchhcCchhhhhhChhhccc
Confidence 24699999999999999976654 44431 22 3567999999999996 88899999999753 33222 13
Q ss_pred CCCeEEEccCCCCCCChhh---------HHhhhcccCCc-hhhHHHHHHH
Q 000842 1180 SKAKTIDLCNNPMTKEPKL---------QGARRIVSEWP-DLDSEARQFT 1219 (1258)
Q Consensus 1180 ~~akii~~~~np~~k~~~l---------~~a~r~~~~w~-~~d~~~~~~~ 1219 (1258)
..+++||||..+ .|+|+. +..+.+...|| -|+++...+.
T Consensus 251 ~~vkIIHY~~~~-~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~~~~~ 299 (333)
T PLN00176 251 DKVKVVHYCAAG-SKPWRYTGKEENMDREDIKMLVKKWWDIYNDESLDYK 299 (333)
T ss_pred CCcEEEEeeCCC-CCCCCCCCcccCCChHHHHHHHHHHHHHhcccccccc
Confidence 578999999521 244431 12233455566 5566554443
No 22
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.86 E-value=4.8e-21 Score=213.32 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=148.5
Q ss_pred EEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEe-CCCChhHHHHHHHHHhhcCcEEEEEE-ecCCcccccccccccHH
Q 000842 953 IFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELIT-YKWPTWLHKQKEKQRII 1030 (1258)
Q Consensus 953 If~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~-~~ls~~~~~~l~~l~~~~~~~i~~v~-~~wp~~l~~~~~~~r~~ 1030 (1258)
-++++++++|..++.+++.||++|++ .++++++. ++++++.++.|+++. ..+..+. ++++..... ....+..
T Consensus 3 y~t~~~~~~Y~~~a~vl~~SL~~~~~-~~~~~vl~~~~is~~~~~~L~~~~----~~~~~v~~i~~~~~~~~-~~~~~~~ 76 (240)
T cd02537 3 YVTLLTNDDYLPGALVLGYSLRKVGS-SYDLVVLVTPGVSEESREALEEVG----WIVREVEPIDPPDSANL-LKRPRFK 76 (240)
T ss_pred EEEEecChhHHHHHHHHHHHHHhcCC-CCCEEEEECCCCCHHHHHHHHHcC----CEEEecCccCCcchhhh-ccchHHH
Confidence 35667888999999999999999977 46777766 579999998888753 3332222 232221110 0112333
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccCCCCCceec
Q 000842 1031 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1110 (1258)
Q Consensus 1031 ~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l~~~~YfNS 1110 (1258)
.+|.||+++.+. +++||||||+|++|.+||.+||++ +..+||++++. | ..||||
T Consensus 77 ~~~~kl~~~~l~--~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~----------~-----------~~~fNs 130 (240)
T cd02537 77 DTYTKLRLWNLT--EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG----------W-----------PDLFNS 130 (240)
T ss_pred HHhHHHHhcccc--ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC----------c-----------cccccc
Confidence 789999999975 599999999999999999999988 66788887642 1 259999
Q ss_pred ceeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCc--ccccCCccccccCccCc-----cccCCCe
Q 000842 1111 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWCESWCGN-----ATKSKAK 1183 (1258)
Q Consensus 1111 Gv~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~--I~~Lp~~wN~~~~~~~~-----~~~~~ak 1183 (1258)
|||++|+.. ...+++++.++. .. ++...|||+||.++.+ . +..||.+||++...+.. .....++
T Consensus 131 Gv~l~~~~~----~~~~~~~~~~~~---~~-~~~~~DQdiLN~~~~~-~~~~~~l~~~yN~~~~~~~~~~~~~~~~~~~~ 201 (240)
T cd02537 131 GVFVLKPSE----ETFNDLLDALQD---TP-SFDGGDQGLLNSYFSD-RGIWKRLPFTYNALKPLRYLHPEALWFGDEIK 201 (240)
T ss_pred eEEEEcCCH----HHHHHHHHHHhc---cC-CCCCCCHHHHHHHHcC-CCCEeECCcceeeehhhhccCchhhcccCCcE
Confidence 999999853 556677776652 22 3677899999999986 6 99999999998654321 2246789
Q ss_pred EEEccCCCCCCChhh
Q 000842 1184 TIDLCNNPMTKEPKL 1198 (1258)
Q Consensus 1184 ii~~~~np~~k~~~l 1198 (1258)
+|||++. .|+|+.
T Consensus 202 iiHf~g~--~KPW~~ 214 (240)
T cd02537 202 VVHFIGG--DKPWSW 214 (240)
T ss_pred EEEEeCC--CCCCCC
Confidence 9999984 366653
No 23
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.69 E-value=3.1e-16 Score=175.94 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=146.4
Q ss_pred EecCcchHHHHHHHHHHHHHcCCCCeEEEEEe-CCCChhHHHHHHH---HHhhcCcEEEEEEecCCcccccccccccHHH
Q 000842 956 IASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPH---MAQEYGFEYELITYKWPTWLHKQKEKQRIIW 1031 (1258)
Q Consensus 956 va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~-~~ls~~~~~~l~~---l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~ 1031 (1258)
.+++..|...+.++..|+-++.. .....++. +.++......+.. +....+..+..+...-+ +. ...+...
T Consensus 6 l~Tn~~YL~gAlvL~~sLr~~gs-~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~----~~-~~~~~~~ 79 (278)
T cd06914 6 YATNADYLCNALILFEQLRRLGS-KAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIA----SG-GDAYWAK 79 (278)
T ss_pred EecChhHHHHHHHHHHHHHHhCC-CCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccC----CC-CCccHHH
Confidence 34577899999999999876654 55555554 6666544332221 22445565555443211 11 2233445
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccCCCCCceecc
Q 000842 1032 AYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISA 1111 (1258)
Q Consensus 1032 ~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l~~~~YfNSG 1111 (1258)
+|.||.+..+ + +++||||||||++|.++|++||+++.. ..+||+ + . || |||||
T Consensus 80 ~~tKl~~~~l-~-~y~kvlyLDaD~l~~~~ideLf~~~~~-~~~Aap-~----------~-----~~--------~FNSG 132 (278)
T cd06914 80 SLTKLRAFNQ-T-EYDRIIYFDSDSIIRHPMDELFFLPNY-IKFAAP-R----------A-----YW--------KFASH 132 (278)
T ss_pred HHHHHHhccc-c-ceeeEEEecCChhhhcChHHHhcCCcc-cceeee-c----------C-----cc--------eecce
Confidence 7999999998 3 799999999999999999999999843 345654 2 1 23 99999
Q ss_pred eeeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccCc-------ccccCCc-ccccc------------
Q 000842 1112 LYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP-------IFSLPQE-WLWCE------------ 1171 (1258)
Q Consensus 1112 v~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~-------I~~Lp~~-wN~~~------------ 1171 (1258)
|||||+..|+..++.+++..... . .....|||+||.++.+ . +..||.+ ||..-
T Consensus 133 vmvi~ps~~~~~~l~~~~~~~~~---~---~~~~~DQdiLN~~~~~-~~~~~~~~~~~Lp~~~y~llt~~~r~~~~~~~l 205 (278)
T cd06914 133 LMVIKPSKEAFKELMTEILPAYL---N---KKNEYDMDLINEEFYN-SKQLFKPSVLVLPHRQYGLLTGEFREKLHKSFL 205 (278)
T ss_pred eEEEeCCHHHHHHHHHHHHHhcc---c---CCCCCChHHHHHHHhC-CccccCcceEEcCccccccCChhhcccCHHHhh
Confidence 99999999999999999888754 1 1245799999999997 5 8889997 88653
Q ss_pred --------CccCccccCCCeEEEccCCCCCCChhhHHh
Q 000842 1172 --------SWCGNATKSKAKTIDLCNNPMTKEPKLQGA 1201 (1258)
Q Consensus 1172 --------~~~~~~~~~~akii~~~~np~~k~~~l~~a 1201 (1258)
.|-.++..+++|+|||..-|+-|+|.....
T Consensus 206 ~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~~ 243 (278)
T cd06914 206 SNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNNL 243 (278)
T ss_pred ccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcCH
Confidence 233334457899999999998888875543
No 24
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=97.02 E-value=0.019 Score=64.18 Aligned_cols=221 Identities=17% Similarity=0.148 Sum_probs=121.1
Q ss_pred cCceeeEEEEecCcchHHHHHHHHHHHHHc--CCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEe----cCCccc
Q 000842 947 HGKTINIFSIASGHLYERFLKIMILSVLKN--TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY----KWPTWL 1020 (1258)
Q Consensus 947 ~~~~InIf~va~~~~Y~~~~~v~i~Sil~n--~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~----~wp~~l 1020 (1258)
.+-+|-|.++|.| .|..++.--+.|.=+| ...++++||++|.-+. ++.+.-..+.++..+.+ .||.
T Consensus 32 ~n~tIgl~vfatG-kY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~-----~p~v~lg~~r~~~V~~v~~~~~W~~-- 103 (271)
T cd02515 32 QNITIGLTVFAVG-KYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAA-----VPEVELGPGRRLTVLKIAEESRWQD-- 103 (271)
T ss_pred cCCEEEEEEEEec-cHHHHHHHHHHHHHHhccCCCeeEEEEEeCCccc-----CcccccCCCceeEEEEeccccCCcH--
Confidence 4677999999888 7999999999999888 3368999999974331 22222122344555555 2332
Q ss_pred ccccccccHHHHHHHHhhcccCCCCCCeEEEEeCceeecCCch-HHHhcCCCCCeEEEeeccCCCCCCCCccccccchhh
Q 000842 1021 HKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMG-ELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWK 1099 (1258)
Q Consensus 1021 ~~~~~~~r~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~-eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~ 1099 (1258)
..-+...++...-...++ .++|-+.++|+|+++.+.+. |.. |..+|...-.-..+....+.|-+..--.
T Consensus 104 ----~sl~Rm~~~~~~~~~~~~-~e~DYlF~~dvd~~F~~~ig~E~L-----g~lva~lHp~~y~~~~~~fpYERrp~S~ 173 (271)
T cd02515 104 ----ISMRRMKTLADHIADRIG-HEVDYLFCMDVDMVFQGPFGVETL-----GDSVAQLHPWWYGKPRKQFPYERRPSSA 173 (271)
T ss_pred ----HHHHHHHHHHHHHHHhhc-ccCCEEEEeeCCceEeecCCHHHh-----hhhheecChhhhcCCCCCCCCcCCCCcc
Confidence 111121222222223334 47999999999999998876 332 1233432211000111111111110001
Q ss_pred ccC---CCCCceecceeeeehHHHHhhcHHHHHHHHHH-HhccCCCCCCCCCCcHHhHhhccC-cccccCCccccccCcc
Q 000842 1100 DHL---RGRPYHISALYVVDLKRFRETAAGDNLRVFYE-TLSKDPNSLANLDQDLPNYAQHTV-PIFSLPQEWLWCESWC 1174 (1258)
Q Consensus 1100 ~~l---~~~~YfNSGv~liNL~~~R~~~~~~~l~~~~~-~ls~~~~sl~~~DQDllN~~~~~~-~I~~Lp~~wN~~~~~~ 1174 (1258)
.++ .|..|+-.|++==-.+.+.+. .+.|...+. -+ .+.-.-.+.|..-||..+... |.+-|+++|+|.+.+.
T Consensus 174 AyIp~~eGdfYy~Ga~~GG~~~~vl~l--~~~c~~~i~~D~-~n~I~A~wHDESHLNkYf~~~Kp~KiLSPeY~w~e~~~ 250 (271)
T cd02515 174 AYIPEGEGDFYYHGAVFGGSVEEVYRL--TRACHEGILADK-ANGIEARWHDESHLNKYFLLHKPTKVLSPEYLWDDRIG 250 (271)
T ss_pred ccccCCCCCeEEeeeecCccHHHHHHH--HHHHHHHHHHHH-hCCceEEeecHhHhHHHHhhCCCCeecChhhcCCccCC
Confidence 112 246787777763333333222 233333322 11 122223567999999988654 4899999999998765
Q ss_pred CccccCCCeEEEcc
Q 000842 1175 GNATKSKAKTIDLC 1188 (1258)
Q Consensus 1175 ~~~~~~~akii~~~ 1188 (1258)
.+...+..+++.+.
T Consensus 251 ~p~~~k~~r~~~~~ 264 (271)
T cd02515 251 QAAEIRLPRLSWLP 264 (271)
T ss_pred CCcccceeEEEEec
Confidence 44445555665543
No 25
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.00047 Score=76.81 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=79.7
Q ss_pred cHHHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCC-----CCCCCCcccc---------
Q 000842 1028 RIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDN-----NKDMDGYRFW--------- 1093 (1258)
Q Consensus 1028 r~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~-----~~~~~g~~~w--------- 1093 (1258)
|....+.+|-+-..- +.|||||||+|.|++.++++||+.. -+.+++.||... .++..| -||
T Consensus 152 rw~~mftKLrVfeqt--EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~~~sp~~fhrp~~~-i~~~ft~~faay 226 (368)
T COG5597 152 RWLDMFTKLRVFEQT--EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDVYESPADFHRPNSG-IFVSFTPAFAAY 226 (368)
T ss_pred cHHHHhHHHHhhhhh--hhceEEEeccchHHhhhhHHHhcch--hhhhccCCchhhCHHHhcCCCCc-cceeecHHHHhh
Confidence 333455555554444 6999999999999999999999876 234566665310 111122 222
Q ss_pred -----------------ccchhhccCCC-CCceecceeeeehHHHHhhcHHHHHHH-HHHHhccCCCCCCCCCCcHHhHh
Q 000842 1094 -----------------RQGFWKDHLRG-RPYHISALYVVDLKRFRETAAGDNLRV-FYETLSKDPNSLANLDQDLPNYA 1154 (1258)
Q Consensus 1094 -----------------~~gyw~~~l~~-~~YfNSGv~liNL~~~R~~~~~~~l~~-~~~~ls~~~~sl~~~DQDllN~~ 1154 (1258)
.+++|....+. +-|||||+||++-.+..-..+..-..- .|. | ...+.|.++|..
T Consensus 227 g~~r~~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~alPklyd----d---a~mmeqsllnla 299 (368)
T COG5597 227 GKMRAALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFALPKLYD----D---ADMMEQSLLNLA 299 (368)
T ss_pred cccHhhhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHhhHHhhh----h---hhHHHHHHHHHH
Confidence 12233322222 478999999999887554332221111 111 1 112458888887
Q ss_pred hcc-C--cccccCCccccccCccCccc
Q 000842 1155 QHT-V--PIFSLPQEWLWCESWCGNAT 1178 (1258)
Q Consensus 1155 ~~~-~--~I~~Lp~~wN~~~~~~~~~~ 1178 (1258)
.+. + ||-.++..|| .-|..+..
T Consensus 300 Yn~~g~FPwerld~~yN--G~wa~~nd 324 (368)
T COG5597 300 YNYEGFFPWERLDPRYN--GYWADAND 324 (368)
T ss_pred HhhhccCchhhcCcccc--cccccccc
Confidence 654 3 6777888888 55654433
No 26
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=1.6 Score=57.77 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=96.2
Q ss_pred cchhhHHHHHHHHHHHHhCCCccCceeEEcceeccCchH---HHHHHHHHHHHHHHHHHHccccCChhhHHHHH-Hhccc
Q 000842 287 EKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSEE---ALLNAMNDELQRIQEQVYYGNINSYTDVLEKV-LSESG 362 (1258)
Q Consensus 287 ~~~~d~~~~~~~~f~~rlgi~~~~p~vlvNG~~~~~~~~---~l~~~i~~el~~lQ~~vy~g~l~d~~dll~~l-l~~~a 362 (1258)
+++....+++-++.+++.|+...-...++||.-.+.+.- .|+..+.+|.+.+-+-.-.| -+...+...+ +....
T Consensus 334 n~~lr~ei~~nq~~~~~~~v~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~lg--i~~~~l~~~l~l~~~~ 411 (1470)
T KOG1879|consen 334 NEDLRTEIEENQSKLEAKGVPPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHNLG--IDGEFLSKLLKLDLSK 411 (1470)
T ss_pred hHHHHHHHHHhhhhhhhcCCCCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHhhccccCc
Confidence 345555566677777778996656789999988887763 78899999998887666666 2333333222 11111
Q ss_pred cc--ccccccc-------cCCCCCCeEeecccccccchhhhhcCccccCCCCCCCCcc-eEEEEEeeCCCHhHHHHHHHH
Q 000842 363 IN--RYNPQII-------TDAKVKPKFISLASSFLGRETELKDINYLHSPETVDDVKP-VTHLLAVDVTSKKGMKLLHEG 432 (1258)
Q Consensus 363 ~~--r~N~~I~-------~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~lv~D~~~~~~~~~l~~~ 432 (1258)
.. -|--+|- -+-.++.+|..+... .+.++. |++++.- ..-.++ -++.+|.|..+++++.++..+
T Consensus 412 ~~~~~~~~Dir~~~v~~vNdlEsD~~Y~~w~~S---vq~lL~--P~~PG~l-r~IrkNl~nlV~vIDpa~~~~~~~l~~~ 485 (1470)
T KOG1879|consen 412 SEKQEYAVDIRSEAVIWVNDLESDPQYDRWPSS---VQLLLK--PTFPGQL-RPIRKNLFNLVFVIDPATPEDLEFLKTA 485 (1470)
T ss_pred ccccceeeecccccceeecccccchhhcchhHH---HHHHhC--CCCCCcc-hHHHhhheeEEEEecCCCccchHHHHHH
Confidence 10 1111111 111122233332221 122332 2332110 011112 344578899999999998877
Q ss_pred HHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccc
Q 000842 433 IRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYS 474 (1258)
Q Consensus 433 l~~l~~~~~~~Rv~~i~~~~~~~~~~~~~l~~~~~aa~~~~~ 474 (1258)
..+. .....+|+|+|.-..++..+...-+..++..+.-..+
T Consensus 486 ~~f~-s~~~P~R~G~v~~~nd~~~d~~~d~g~av~~af~yi~ 526 (1470)
T KOG1879|consen 486 RNFV-SHQIPVRIGFVFIANDDDEDGVTDLGVAVLRAFNYIS 526 (1470)
T ss_pred HHHh-cCCCceEEEEEEEecCCcccchhhHHHHHHHHHHHHH
Confidence 7765 4557899999976544322222234444444443333
No 27
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=96.54 E-value=0.056 Score=62.30 Aligned_cols=224 Identities=15% Similarity=0.102 Sum_probs=110.1
Q ss_pred cCceeeEEEEecCcchHHHHHHHHHHHHHc--CCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccc
Q 000842 947 HGKTINIFSIASGHLYERFLKIMILSVLKN--TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 1024 (1258)
Q Consensus 947 ~~~~InIf~va~~~~Y~~~~~v~i~Sil~n--~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~ 1024 (1258)
.+-||=+.++|.| .|..++.--+.|.=+| ...++++||++|..+ .++.+.-.-+-.+..+.+. ...+-|-
T Consensus 97 ~n~tIGL~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~-----~vP~i~l~~~r~~~V~~v~--~~~~Wqd 168 (337)
T PF03414_consen 97 QNITIGLTVFATG-KYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPS-----KVPRIELGPGRRLKVFEVQ--EEKRWQD 168 (337)
T ss_dssp CT-EEEEEEEE-C-CHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GG-----GS------TTEEEEEEE-S--GGSSHHH
T ss_pred cCceEEEEEEecc-cHHHHHHHHHHhHHHhccCCcEEEEEEEeCchh-----hCCccccCCCceeEEEEec--ccCCCcc
Confidence 4567888888887 7999999999999888 346899999997643 2333332334566666653 1111111
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCceeecCCchH-HHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccCC
Q 000842 1025 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE-LYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR 1103 (1258)
Q Consensus 1025 ~~~r~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~e-L~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l~ 1103 (1258)
.+-+.+.+........++ .++|-+.++|+|+++.+++.. .. |..+|...-.--.+....|.|-+..--..+++
T Consensus 169 ~sm~Rm~~i~~~i~~~~~-~EvDYLFc~dvd~~F~~~vGvE~L-----g~lva~LHp~~y~~~~~~FpYERrp~S~AyIp 242 (337)
T PF03414_consen 169 ISMMRMEMISEHIEQHIQ-HEVDYLFCMDVDMVFQDHVGVEIL-----GDLVATLHPWFYFKPRESFPYERRPKSQAYIP 242 (337)
T ss_dssp HHHHHHHHHHHHHHHCHH-HH-SEEEEEESSEEE-S-B-GGG------SSEEEEESTTTTTSTGGGS--B-STTSTTB--
T ss_pred chhHHHHHHHHHHHHHHh-hcCCEEEEEecceEEecccCHHHH-----HHHHHHhCHHHHCCChhhCccccCcccccccc
Confidence 111111222222223344 479999999999999987763 22 44566543111011111111111100011222
Q ss_pred ---CCCceecceeeeehHHHHhhcHHHHHHHHH-HHhccCCCCCCCCCCcHHhHhhc-cCcccccCCccccccCccCccc
Q 000842 1104 ---GRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCESWCGNAT 1178 (1258)
Q Consensus 1104 ---~~~YfNSGv~liNL~~~R~~~~~~~l~~~~-~~ls~~~~sl~~~DQDllN~~~~-~~~I~~Lp~~wN~~~~~~~~~~ 1178 (1258)
|..|+-+|++==-..+..+. .+.|...+ +-+.++.. -.+.|..-||..+. +.|.+.|+++|+|.+.+-....
T Consensus 243 ~~eGDfYY~ga~fGGt~~~vl~L--t~~c~~~i~~D~~n~I~-A~WhDESHLNKYfl~~KPtKvLSPEY~Wd~~~~~p~~ 319 (337)
T PF03414_consen 243 YGEGDFYYHGAFFGGTVEEVLRL--TEACHQGIMQDKANGIE-ALWHDESHLNKYFLYHKPTKVLSPEYCWDERFGWPPQ 319 (337)
T ss_dssp TT--S--EECCEEEECHHHHHHH--HHHHHHHHHHHHHTT----TTCHHHHHHHHHHHS--SEEE-GGGSBSHHHSS-TT
T ss_pred CCCCCeEEeceecCCcHHHHHHH--HHHHHHHHHhhhhcCce-EeccchhhhHHHHhhCCCceecCHHHccCccCCCCcc
Confidence 56888888775333333322 22333322 22223333 44679999999774 5689999999999887755555
Q ss_pred cCCCeEEEc
Q 000842 1179 KSKAKTIDL 1187 (1258)
Q Consensus 1179 ~~~akii~~ 1187 (1258)
.+..++++.
T Consensus 320 ik~vr~~~~ 328 (337)
T PF03414_consen 320 IKIVRFSWV 328 (337)
T ss_dssp ESSSSEEES
T ss_pred cceEEEEEe
Confidence 566666644
No 28
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=95.44 E-value=0.03 Score=64.04 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=69.5
Q ss_pred EEEEecCcchHHHHHHHHHHHHHcCC-CCeEEEEEe-CCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHH
Q 000842 953 IFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 1030 (1258)
Q Consensus 953 If~va~~~~Y~~~~~v~i~Sil~n~~-~~v~f~il~-~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~ 1030 (1258)
|+.++.+ .|...+..+|..+-+... -||.++.-. +++++++++.|.. ..++.++++. |..........-..
T Consensus 4 IVi~~g~-~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~-----~q~v~~vd~~-~~~~~~~~~~~~~~ 76 (271)
T PF11051_consen 4 IVITAGD-KYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP-----DQDVWFVDAS-CVIDPDYLGKSFSK 76 (271)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh-----hhhhheecce-EEeecccccccccc
Confidence 4544444 777777777777765332 488888776 8899999987766 2334455443 22111111100000
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcC
Q 000842 1031 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMD 1069 (1258)
Q Consensus 1031 ~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~d 1069 (1258)
..|..-.+..+|- ..+.|||||+|.|...|+..||+..
T Consensus 77 ~~~~~K~lA~l~s-sFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 77 KGFQNKWLALLFS-SFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred CCchhhhhhhhhC-CcceEEEEcCCcccccCHHHHhcCc
Confidence 0455555677785 7999999999999999999999753
No 29
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.96 E-value=2.3 Score=44.79 Aligned_cols=144 Identities=8% Similarity=0.018 Sum_probs=86.7
Q ss_pred ccccceEEEEcCCCcccHHHHHHHHHHHhcc-cceEEEEEeeecccccceeccCCccCCCcccCCCCCCCchhHHHHHHH
Q 000842 143 KNLFHAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLF 221 (1258)
Q Consensus 143 rNi~nlVfviDps~~~~~~~l~~l~~~~~~~-~PiR~GlVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iar~f 221 (1258)
..=..++.+.||..+.....-..+..++++. --+|+.++|++.. ...+...++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------~~~~~~aa~a~ 69 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFG------------------------GGEGEPLARAF 69 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCccc------------------------cccchHHHHHH
Confidence 4456799999999998877777776665543 3477777887643 01234566777
Q ss_pred HHHHHhhChHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhhhHhhcccCCCCCChhhhhhhhccchhhHHHHHHHHHH
Q 000842 222 LFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFV 301 (1258)
Q Consensus 222 ~~l~~~~g~~~al~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~ 301 (1258)
+..... |.. ..|...++....... .+..+.+.+.+.. .. .+.+.+.+...+.+.++.+.++...+..
T Consensus 70 ~aa~~~-~~~--~~~~~~lf~~~~~~~----~~~~~~~~l~~~a-~~-----~Gl~~~~~~~~~~s~~~~~~i~~~~~~~ 136 (178)
T cd03019 70 YAAEAL-GLE--DKLHAALFEAIHEKR----KRLLDPDDIRKIF-LS-----QGVDKKKFDAAYNSFSVKALVAKAEKLA 136 (178)
T ss_pred HHHHHc-CcH--hhhhHHHHHHHHHhC----CCCCCHHHHHHHH-HH-----hCCCHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 665443 322 233333333211100 0111122233332 11 1234456777777888888888889999
Q ss_pred HHhCCCccCceeEEcceeccCch
Q 000842 302 FKLGLTKLKCCLLMNGLVSESSE 324 (1258)
Q Consensus 302 ~rlgi~~~~p~vlvNG~~~~~~~ 324 (1258)
+++|+.+ .|.++|||..+....
T Consensus 137 ~~~gi~g-TPt~iInG~~~~~~~ 158 (178)
T cd03019 137 KKYKITG-VPAFVVNGKYVVNPS 158 (178)
T ss_pred HHcCCCC-CCeEEECCEEEEChh
Confidence 9999954 599999999876544
No 30
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=93.55 E-value=0.18 Score=55.21 Aligned_cols=141 Identities=21% Similarity=0.203 Sum_probs=74.8
Q ss_pred HHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccCCCCCceecce
Q 000842 1033 YKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISAL 1112 (1258)
Q Consensus 1033 y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l~~~~YfNSGv 1112 (1258)
.+--++-.++-..+ .|+|+|+|++...|+.+++ +-.+.-+.+..|+....... .....+|+|+
T Consensus 54 ~K~~~~~~~L~~G~-~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~~~~--------------~~~~~~n~G~ 116 (212)
T PF03407_consen 54 LKPKVLLDLLELGY-DVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGTNSD--------------RNGNLVNTGF 116 (212)
T ss_pred HHHHHHHHHHHcCC-ceEEecCCEEEecCcHHhh--ccCCCceEEecCCCcccchh--------------hcCCccccce
Confidence 33334445555455 4999999999999999999 22444455554543211000 1123459999
Q ss_pred eeeehHHHHhhcHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhccC-------cccccCCccc------ccc--CccCcc
Q 000842 1113 YVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTV-------PIFSLPQEWL------WCE--SWCGNA 1177 (1258)
Q Consensus 1113 ~liNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~-------~I~~Lp~~wN------~~~--~~~~~~ 1177 (1258)
|.+--.. +-..+.+.+...+. ..+. ..||.++|.++... .+..||...- ++. .|..-.
T Consensus 117 ~~~r~t~-~~~~~~~~w~~~~~---~~~~---~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~ 189 (212)
T PF03407_consen 117 YYFRPTP-RTIAFLEDWLERMA---ESPG---CWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDWAWVP 189 (212)
T ss_pred EEEecCH-HHHHHHHHHHHHHH---hCCC---cchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccceeecchhhhhc
Confidence 9984333 12222333333332 2221 13999999998752 2556776443 111 111111
Q ss_pred ccCCCeEEEccCCCCCCChhh
Q 000842 1178 TKSKAKTIDLCNNPMTKEPKL 1198 (1258)
Q Consensus 1178 ~~~~akii~~~~np~~k~~~l 1198 (1258)
...++.++|..... .++.|+
T Consensus 190 ~~~~p~~vH~n~~~-g~~~K~ 209 (212)
T PF03407_consen 190 TKNKPYIVHANCCD-GKEGKR 209 (212)
T ss_pred cccccceEEEcCCC-ChHhHH
Confidence 13567788875433 344443
No 31
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.76 E-value=8.2 Score=39.19 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=82.9
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhcccc-eEEEEEeeecccccceeccCCccCCCcccCCCCCCCchhHHHHHHHHHH
Q 000842 146 FHAVYVLDPATVCGLEVIDMIMSLYENHFP-LRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 224 (1258)
Q Consensus 146 ~nlVfviDps~~~~~~~l~~l~~~~~~~~P-iR~GlVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iar~f~~l 224 (1258)
..++++.||..+...++-..+..++.. .| +|+=+.+++-. ...+...+++...+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~-~~~~~~~~~~~p~~------------------------~~~~~~~~~~~~~~ 61 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKE-DPDVRVVFKEFPIL------------------------GESSVLAARVALAV 61 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEeCCcc------------------------CcchHHHHHHHHHH
Confidence 468899999999888877777665432 23 34444443211 01234455555555
Q ss_pred HHhhChHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhhhHhhcccCCCCCChhhhhhhhccchhhHHHHHHHHHHHHh
Q 000842 225 KESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 304 (1258)
Q Consensus 225 ~~~~g~~~al~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~rl 304 (1258)
.+ .+......|...++..... .+.+.+.+.. +. .+.+.+.+...+.++.+.+.++...+...++
T Consensus 62 ~~-~~~~~~~~~~~~lf~~~~~---------~~~~~l~~~a-~~-----~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (154)
T cd03023 62 WK-NGPGKYLEFHNALMATRGR---------LNEESLLRIA-KK-----AGLDEAKLKKDMDDPEIEATIDKNRQLARAL 125 (154)
T ss_pred HH-hChhHHHHHHHHHHhcCCC---------CCHHHHHHHH-HH-----cCCCHHHHHHHhhChHHHHHHHHHHHHHHHc
Confidence 54 3556667777777653211 1112222221 11 1244556777777778888888888999999
Q ss_pred CCCccCceeEEcceeccCc
Q 000842 305 GLTKLKCCLLMNGLVSESS 323 (1258)
Q Consensus 305 gi~~~~p~vlvNG~~~~~~ 323 (1258)
|+.+ .|.++|||..+...
T Consensus 126 gi~g-tPt~~v~g~~~~G~ 143 (154)
T cd03023 126 GITG-TPAFIIGDTVIPGA 143 (154)
T ss_pred CCCc-CCeEEECCEEecCC
Confidence 9965 69999999987644
No 32
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.48 E-value=7.1 Score=40.26 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=78.5
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhc---ccceEEEEEeeecccccceeccCCccCCCcccCCCCCCCchhHHHHHHHH
Q 000842 146 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFL 222 (1258)
Q Consensus 146 ~nlVfviDps~~~~~~~l~~l~~~~~~---~~PiR~GlVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iar~f~ 222 (1258)
..++.+.||..+...++...+..++++ .=-++|-++++.-. ...+...+.+..
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~------------------------~~~~~~a~~~~~ 69 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD------------------------KHSSLRAAMAAE 69 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS------------------------HHHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc------------------------chhHHHHHHHHH
Confidence 478999999999988866665555444 12667777766433 011345566666
Q ss_pred HHHHhhChHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhhhHhhcccCCCCCChhhhhhhhccchhhHHHHHHHHHHH
Q 000842 223 FIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVF 302 (1258)
Q Consensus 223 ~l~~~~g~~~al~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~ 302 (1258)
.+.+. | ..+.++.+++........ .. .. +.+. .......+...+.+.++...+....++.+
T Consensus 70 ~~~~~-~--~~~~~~~~~~~~~~~~~~------~~-~~----i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
T PF13462_consen 70 CVADQ-G--KYFWFFHELLFSQQENFE------NK-KD----IAAN-----AGGSNEQFNKCLNSDEIKAQLEADSQLAR 130 (162)
T ss_dssp HHHHH-T--HHHHHHHHHHHHHCHSTS------SH-HH----HHHH-----TTSHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHH-h--HHHHHHHHHHHHhhhccc------hh-HH----HHHH-----cCCCHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 66555 4 555666654433322110 01 11 1000 01113345555666778888888899999
Q ss_pred HhCCCccCceeEEcceeccCc
Q 000842 303 KLGLTKLKCCLLMNGLVSESS 323 (1258)
Q Consensus 303 rlgi~~~~p~vlvNG~~~~~~ 323 (1258)
+.||. ..|.++|||..++..
T Consensus 131 ~~~i~-~tPt~~inG~~~~~~ 150 (162)
T PF13462_consen 131 QLGIT-GTPTFFINGKYVVGP 150 (162)
T ss_dssp HHT-S-SSSEEEETTCEEETT
T ss_pred HcCCc-cccEEEECCEEeCCC
Confidence 99995 469999999998643
No 33
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=86.59 E-value=2.4 Score=38.81 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=37.5
Q ss_pred EEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeee-eCCceeEEEe
Q 000842 794 LTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMK-VSPGVWYLQL 846 (1258)
Q Consensus 794 ieG~~~d~~~~~p~GlqL~L~~~~~~~~~dTivManlGYfQlk-a~PG~w~l~l 846 (1258)
|.|..+|.+..|..|..+.|.+..+... .+.+=..-|+|.|. ..||-|.|.+
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~-~~~~Td~~G~f~~~~l~~g~Y~l~v 54 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTV-YTTTTDSDGRFSFEGLPPGTYTLRV 54 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTEC-CEEE--TTSEEEEEEE-SEEEEEEE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCE-EEEEECCCceEEEEccCCEeEEEEE
Confidence 7899999866999999999987655543 44444445999998 8999999987
No 34
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=82.65 E-value=62 Score=33.84 Aligned_cols=144 Identities=10% Similarity=0.088 Sum_probs=68.6
Q ss_pred CcceEEEEEeeCCCHhHHHHHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchhhhHHHHHHHHhh
Q 000842 409 VKPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCS 488 (1258)
Q Consensus 409 ~~~~t~~lv~D~~~~~~~~~l~~~l~~l~~~~~~~Rv~~i~~~~~~~~~~~~~l~~~~~aa~~~~~~~~~~~~~l~~l~~ 488 (1258)
..++++..+.||.++-....-...-+.+++...++|+.++|.+..... .....++..++.. .. ....+...+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~aa~a~~aa~~-~~---~~~~~~~~lf~ 87 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFGGGE--GEPLARAFYAAEA-LG---LEDKLHAALFE 87 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcccccc--chHHHHHHHHHHH-cC---cHhhhhHHHHH
Confidence 346888899999999666554444334433345778877775532211 1233334333321 11 11122222222
Q ss_pred hhhhhhhhcccccccchHHHHHHHHHHHhhcCCChHHHhhhcCccchhhhHHHHHHHHHHHHHHhCCCCCCcEEEEcCEE
Q 000842 489 FYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRV 568 (1258)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~g~~~~v~NGR~ 568 (1258)
..... .....+ .+.+.+.++..+++.+.+...+.+-. +......... ....+|+. |.+.+++||+.
T Consensus 88 ~~~~~--------~~~~~~-~~~l~~~a~~~Gl~~~~~~~~~~s~~---~~~~i~~~~~-~~~~~gi~-gTPt~iInG~~ 153 (178)
T cd03019 88 AIHEK--------RKRLLD-PDDIRKIFLSQGVDKKKFDAAYNSFS---VKALVAKAEK-LAKKYKIT-GVPAFVVNGKY 153 (178)
T ss_pred HHHHh--------CCCCCC-HHHHHHHHHHhCCCHHHHHHHHhCHH---HHHHHHHHHH-HHHHcCCC-CCCeEEECCEE
Confidence 11000 000000 12234445556676666655443322 1111112222 23345765 88999999999
Q ss_pred ecCC
Q 000842 569 TFPI 572 (1258)
Q Consensus 569 i~~~ 572 (1258)
+...
T Consensus 154 ~~~~ 157 (178)
T cd03019 154 VVNP 157 (178)
T ss_pred EECh
Confidence 8553
No 35
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=82.24 E-value=43 Score=35.57 Aligned_cols=159 Identities=13% Similarity=0.017 Sum_probs=83.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHHhcccceEEEEEeeecccccceeccCCccCCCc---------------cc-----CC
Q 000842 147 HAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPV---------------AE-----DD 206 (1258)
Q Consensus 147 nlVfviDps~~~~~~~l~~l~~~~~~~~PiR~GlVp~~~~~~~~~~~~~~~~~~~~---------------~~-----~~ 206 (1258)
+++|+.|+.++-..-....+..+.+..-.++|=..|+.=. +.....++..+... .. ..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~~ 78 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR--PDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFNF 78 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS--THHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TBT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc--cccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcccC
Confidence 4789999999987776666666654443566666666422 00111111100000 00 00
Q ss_pred CCCCCchhHHHHHHHHHHHHhhChHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhhhHhhcccCCCCCChhhhhhhhc
Q 000842 207 SPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEK 286 (1258)
Q Consensus 207 ~~~~~~~s~~iar~f~~l~~~~g~~~al~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~ 286 (1258)
.......+....++++++.+. | ....|...++...-.. ..+--+.+.+.+.+ ++ .+.+.+.++..+.
T Consensus 79 ~~~~~~~s~~a~~~~~~a~~~-~--~~~~~~~al~~a~~~~----~~~i~~~~vl~~~~-~~-----~Gld~~~~~~~~~ 145 (193)
T PF01323_consen 79 PPPFPGNSRPAHRAAYAAQEQ-G--KADAFADALFRAYFVE----GRDISDPDVLAEIA-EE-----AGLDPDEFDAALD 145 (193)
T ss_dssp SSTHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHTS----ST-TSSHHHHHHHH-HH-----TT--HHHHHHHHT
T ss_pred CchhhhhhHHHHHHHHHHHHh-h--hhhHHHHHHHHHHHhc----ccCCCCHHHHHHHH-HH-----cCCcHHHHHHHhc
Confidence 000001344556666666554 3 4444544444322110 01112223333333 11 1345667788888
Q ss_pred cchhhHHHHHHHHHHHHhCCCccCceeEEcce-ecc
Q 000842 287 EKTFMDQSQESSMFVFKLGLTKLKCCLLMNGL-VSE 321 (1258)
Q Consensus 287 ~~~~d~~~~~~~~f~~rlgi~~~~p~vlvNG~-~~~ 321 (1258)
++.+...+++..+-..++|+.+ .|.++|||. .+.
T Consensus 146 ~~~~~~~~~~~~~~a~~~gv~G-vP~~vv~g~~~~~ 180 (193)
T PF01323_consen 146 SPEVKAALEEDTAEARQLGVFG-VPTFVVNGKYRFF 180 (193)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSS-SSEEEETTTEEEE
T ss_pred chHHHHHHHHHHHHHHHcCCcc-cCEEEECCEEEEE
Confidence 8888888888888889999965 599999999 443
No 36
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=80.86 E-value=13 Score=34.47 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=37.9
Q ss_pred EEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEec-ceeeeeeeCCceeEEEe
Q 000842 794 LTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN-LGYWQMKVSPGVWYLQL 846 (1258)
Q Consensus 794 ieG~~~d~~~-~~p~GlqL~L~~~~~~~~~dTivMan-lGYfQlka~PG~w~l~l 846 (1258)
|.|...|..+ .|..|+-+.+.+... -++++ -|+|.|++++|-+.|.+
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~~------~~~Td~~G~F~i~~~~g~~~l~i 50 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTKK------GTVTDENGRFSIKLPEGDYTLKI 50 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCcc------eEEECCCeEEEEEEcCCCeEEEE
Confidence 6788899886 999999999987642 23333 49999999999999987
No 37
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=79.05 E-value=11 Score=35.00 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=46.0
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000842 791 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 846 (1258)
Q Consensus 791 ~ilieG~~~d~~~~~p~GlqL~L~~~~~~~~~dTivManlGYfQlka~PG~w~l~l 846 (1258)
-.+|.|... ....|..|--.-|.+.++.-+.+..+-++ |=|-|=|.||.|.++.
T Consensus 7 e~VItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~-G~FRFfaapG~WtvRa 60 (85)
T PF07210_consen 7 ETVITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSAT-GDFRFFAAPGSWTVRA 60 (85)
T ss_pred eEEEEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCC-ccEEEEeCCCceEEEE
Confidence 568999988 44489999999999988888777777666 9999999999999985
No 38
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=78.08 E-value=59 Score=33.35 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=29.2
Q ss_pred cceEEEEEeeCCCHhHHHHHHHHHHHHhc--CCCceEEEEEEcCC
Q 000842 410 KPVTHLLAVDVTSKKGMKLLHEGIRFLIG--GSNGARLGVLFSAS 452 (1258)
Q Consensus 410 ~~~t~~lv~D~~~~~~~~~l~~~l~~l~~--~~~~~Rv~~i~~~~ 452 (1258)
.++++....|+.++...+.-....+.++. ....+++.+.|.+-
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 45788899999999887765444443322 24688888888764
No 39
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=70.75 E-value=22 Score=35.76 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=63.5
Q ss_pred EEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHH
Q 000842 953 IFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWA 1032 (1258)
Q Consensus 953 If~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~ 1032 (1258)
|+..+.++ ...+.-++.|+.+.+..++.++|++++-+++..+.+.++.+ .+..++++... .- .....+
T Consensus 2 vvip~~n~--~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~--~n-------~g~~~~ 69 (169)
T PF00535_consen 2 VVIPTYNE--AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNP--EN-------LGFSAA 69 (169)
T ss_dssp EEEEESS---TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHC--CC-------SHHHHH
T ss_pred EEEEeeCC--HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccc--cc-------cccccc
Confidence 34444554 55677889999988667899999998888888888888876 44555555443 10 111111
Q ss_pred HHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHhcCC
Q 000842 1033 YKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDI 1070 (1258)
Q Consensus 1033 y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~~dl 1070 (1258)
. ...+.. . .-+-++++|+|.++..+ +.+|++.-.
T Consensus 70 ~-n~~~~~-a--~~~~i~~ld~D~~~~~~~l~~l~~~~~ 104 (169)
T PF00535_consen 70 R-NRGIKH-A--KGEYILFLDDDDIISPDWLEELVEALE 104 (169)
T ss_dssp H-HHHHHH-----SSEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred c-cccccc-c--ceeEEEEeCCCceEcHHHHHHHHHHHH
Confidence 1 112222 2 24599999999998876 777775533
No 40
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=67.29 E-value=47 Score=32.29 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000842 963 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1042 (1258)
Q Consensus 963 ~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~RLfL~~lf 1042 (1258)
.+.+..++.|+++....++.++|+++.-+++..+.+..+... ...+..+... . ...+.. +. ...+...
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~----~~g~~~---~~-~~~~~~~- 76 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINE--E----NQGLAA---AR-NAGLKAA- 76 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEec--C----CCChHH---HH-HHHHHHh-
Confidence 577889999999887667889999998888888777777643 1111111111 1 000111 10 0111111
Q ss_pred CCCCCeEEEEeCceeecCCchH
Q 000842 1043 PLSLEKVIFVDADQVVRADMGE 1064 (1258)
Q Consensus 1043 P~~~drVLYLD~D~Iv~~Dl~e 1064 (1258)
..+.++++|+|.++..+.-+
T Consensus 77 --~~d~v~~~d~D~~~~~~~~~ 96 (156)
T cd00761 77 --RGEYILFLDADDLLLPDWLE 96 (156)
T ss_pred --cCCEEEEECCCCccCccHHH
Confidence 58999999999988765433
No 41
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=66.53 E-value=6.7 Score=44.15 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhccc---CCCCCCeEEEEeCceeecC
Q 000842 999 PHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVI---FPLSLEKVIFVDADQVVRA 1060 (1258)
Q Consensus 999 ~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~RLfL~~l---fP~~~drVLYLD~D~Iv~~ 1060 (1258)
...|+..|..+.++... ..... ..+..|+ +...|-.. +| +.+-|.|||+|.+|..
T Consensus 34 ~~Ya~~HgY~~~~~~~~--~~~~~---~~~~~W~-K~~~lr~~m~~~P-~~~wv~~lD~Dali~n 91 (239)
T PF05637_consen 34 VDYARRHGYDLYYRNIQ--EYDDP---ERPGSWA-KIPALRAAMKKYP-EAEWVWWLDSDALIMN 91 (239)
T ss_dssp HHHHHHHT-EEEEE-S----S--S---HHHHHHT-HHHHHHHHHHH-T-T-SEEEEE-TTEEE--
T ss_pred HHHHHhcCCEEEEEChH--HcCCC---CCChhhH-HHHHHHHHHHhCC-CCCEEEEEcCCeEEEe
Confidence 34566678887665553 22221 1112232 22222222 48 6999999999999874
No 42
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=64.22 E-value=24 Score=36.13 Aligned_cols=58 Identities=22% Similarity=0.438 Sum_probs=43.6
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCC--CcccceEE---EecceeeeeeeCCceeEEEecC
Q 000842 791 ALVLTGHCSEKDHEPPQGLQLILGTKST--PHLVDTLV---MANLGYWQMKVSPGVWYLQLAP 848 (1258)
Q Consensus 791 ~ilieG~~~d~~~~~p~GlqL~L~~~~~--~~~~dTiv---ManlGYfQlka~PG~w~l~l~~ 848 (1258)
+++|.|--.|-.+.|..|-+++|....+ .++..|.. =.+-|||=|.+.||.|.+.|..
T Consensus 2 sV~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~ 64 (134)
T PF08400_consen 2 SVKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKV 64 (134)
T ss_pred eEEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEE
Confidence 5788888888888999999999964422 23333332 2567999999999999998863
No 43
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.56 E-value=1.4e+02 Score=31.60 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=77.7
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhc---ccceEEEEEeeecccccc--ee------------c-cCCc-cCCCcccCC
Q 000842 146 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKS--IE------------I-NGGE-LHSPVAEDD 206 (1258)
Q Consensus 146 ~nlVfviDps~~~~~~~l~~l~~~~~~---~~PiR~GlVp~~~~~~~~--~~------------~-~~~~-~~~~~~~~~ 206 (1258)
+++.|+.||.++-..-....+..+.++ ++.+++=+.++...+.+. .. + ..|. ...+....
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 79 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLEL- 79 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHhc-
Confidence 367899999999876655556555443 788886555554431100 00 0 0000 00000000
Q ss_pred CCCCCchhHHHHHHHHHHHHhhChHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhhhHhhcccCCCCCChhhhhhhhc
Q 000842 207 SPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEK 286 (1258)
Q Consensus 207 ~~~~~~~s~~iar~f~~l~~~~g~~~al~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~ 286 (1258)
...+-.+....+++...... |......|+..+....-... .+....+.+.+.. .. .+.+.+.+...+.
T Consensus 80 -~~~~~~s~~a~~~~~aa~~~-~~~~~~~~~~~l~~a~~~~~----~~i~~~~~l~~ia-~~-----~Gld~~~~~~~~~ 147 (193)
T cd03025 80 -LLFDLDSAPASRAIKAARLQ-GPERLLEMLKAIQRAHYVEG----RDLADTEVLRELA-IE-----LGLDVEEFLEDFQ 147 (193)
T ss_pred -ccCCCCchHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHcC----CCCCCHHHHHHHH-HH-----cCCCHHHHHHHHc
Confidence 00000133344544454433 54556677776654321100 1111112222222 11 1234445666677
Q ss_pred cchhhHHHHHHHHHHHHhCCCccCceeEEc
Q 000842 287 EKTFMDQSQESSMFVFKLGLTKLKCCLLMN 316 (1258)
Q Consensus 287 ~~~~d~~~~~~~~f~~rlgi~~~~p~vlvN 316 (1258)
++.+...+....+...++|+.+ .|.++|+
T Consensus 148 s~~~~~~l~~~~~~a~~~gv~g-~Ptfvv~ 176 (193)
T cd03025 148 SDEAKQAIQEDQKLARELGING-FPTLVLE 176 (193)
T ss_pred ChHHHHHHHHHHHHHHHcCCCc-cCEEEEE
Confidence 7788888888888888999976 4777664
No 44
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=59.59 E-value=82 Score=31.43 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccH-HHHHHHHhhcc
Q 000842 962 YERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRI-IWAYKILFLDV 1040 (1258)
Q Consensus 962 Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~-~~~y~RLfL~~ 1040 (1258)
-...+..++.|++..+..++.++|++++-++...+.+......+...+.++.- +. ...+.+. .+++..
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~--~~----~~g~~~~~n~~~~~----- 76 (180)
T cd06423 8 EEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRD--KE----NGGKAGALNAGLRH----- 76 (180)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEe--cc----cCCchHHHHHHHHh-----
Confidence 35788899999998776678999999888877777777665443222222211 11 1111111 122211
Q ss_pred cCCCCCCeEEEEeCceeecCC-chHH
Q 000842 1041 IFPLSLEKVIFVDADQVVRAD-MGEL 1065 (1258)
Q Consensus 1041 lfP~~~drVLYLD~D~Iv~~D-l~eL 1065 (1258)
. .-+-|+++|+|.++..+ +.++
T Consensus 77 ~---~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 77 A---KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred c---CCCEEEEECCCCCcChHHHHHH
Confidence 1 57889999999988755 5556
No 45
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=59.13 E-value=2e+02 Score=28.85 Aligned_cols=136 Identities=19% Similarity=0.169 Sum_probs=65.8
Q ss_pred cceEEEEEeeCCCHhHHHHHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchhhhHHHHHHHHhhh
Q 000842 410 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSF 489 (1258)
Q Consensus 410 ~~~t~~lv~D~~~~~~~~~l~~~l~~l~~~~~~~Rv~~i~~~~~~~~~~~~~l~~~~~aa~~~~~~~~~~~~~l~~l~~~ 489 (1258)
.++++.++.|+.++-..+.-....+.+ ....++|+.+.+-|-... .+....++..++.. ........+...+...
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~-~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~lf~~ 79 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLL-KEDPDVRVVFKEFPILGE--SSVLAARVALAVWK--NGPGKYLEFHNALMAT 79 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHH-HHCCCceEEEEeCCccCc--chHHHHHHHHHHHH--hChhHHHHHHHHHHhc
Confidence 457888899999988776654333333 234568888877664321 12222333222221 0111223333333221
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHhhcCCChHHHhhhcCccchhhhHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe
Q 000842 490 YERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT 569 (1258)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~g~~~~v~NGR~i 569 (1258)
.. ..+ .+.+.+.++..+++.+.+...+.+- .......+.... .+.+|+. |.+.+++||+++
T Consensus 80 ~~----------~~~----~~~l~~~a~~~gl~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~gi~-gtPt~~v~g~~~ 140 (154)
T cd03023 80 RG----------RLN----EESLLRIAKKAGLDEAKLKKDMDDP---EIEATIDKNRQL-ARALGIT-GTPAFIIGDTVI 140 (154)
T ss_pred CC----------CCC----HHHHHHHHHHcCCCHHHHHHHhhCh---HHHHHHHHHHHH-HHHcCCC-cCCeEEECCEEe
Confidence 00 000 0123333445566666665544331 111112222222 3445776 789999999987
No 46
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=58.68 E-value=61 Score=42.13 Aligned_cols=98 Identities=15% Similarity=0.318 Sum_probs=71.2
Q ss_pred ceEEeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEE
Q 000842 747 TLTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLV 826 (1258)
Q Consensus 747 lltl~~d~P~~W~v~~~~~~~DlDNi~l~~~~~~~~~~a~yeLe~ilieG~~~d~~~~~p~GlqL~L~~~~~~~~~dTiv 826 (1258)
-|+|.+..|..|--+|..-..-.|-- .++= +.+=+.+|.+...-|.|..--....+|+|++.+|+++.++ +..|.+
T Consensus 77 dyiLkIspP~GwsfePd~Vel~vDGk--td~C-s~n~DinFhftGFsv~GkVlgaaggGpagV~velrs~e~~-iast~T 152 (1165)
T KOG1948|consen 77 DYILKISPPAGWSFEPDSVELKVDGK--TDAC-SLNEDINFHFTGFSVRGKVLGAAGGGPAGVLVELRSQEDP-IASTKT 152 (1165)
T ss_pred cEEEEecCCCCccccCceEEEEeccc--cccc-cCCCceEEEEeeeeEeeEEeeccCCCcccceeecccccCc-ceeeEe
Confidence 39999999999999986655444420 0000 1233458889999999988665557999999999988444 667888
Q ss_pred Eecceeeeee-eCCceeEEEecCC
Q 000842 827 MANLGYWQMK-VSPGVWYLQLAPG 849 (1258)
Q Consensus 827 ManlGYfQlk-a~PG~w~l~l~~g 849 (1258)
=++ |=|-|+ +.||-|.++--.+
T Consensus 153 ~~~-Gky~f~~iiPG~Yev~ashp 175 (1165)
T KOG1948|consen 153 EDG-GKYEFRNIIPGKYEVSASHP 175 (1165)
T ss_pred cCC-CeEEEEecCCCceEEeccCc
Confidence 787 777777 9999999875333
No 47
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.16 E-value=66 Score=34.15 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000842 963 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1042 (1258)
Q Consensus 963 ~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~RLfL~~lf 1042 (1258)
...+..++.||+..+..++.++|++++-++...+.++.+..+++..+.++.-. . ......+...- + ..
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~--~-------~~G~~~~~n~g-~--~~ 77 (214)
T cd04196 10 EKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNG--K-------NLGVARNFESL-L--QA 77 (214)
T ss_pred HHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCC--C-------CccHHHHHHHH-H--Hh
Confidence 56788999999987766789999998888877788888877665343333221 1 00111111111 1 11
Q ss_pred CCCCCeEEEEeCceeecCC-chHHHhc
Q 000842 1043 PLSLEKVIFVDADQVVRAD-MGELYDM 1068 (1258)
Q Consensus 1043 P~~~drVLYLD~D~Iv~~D-l~eL~~~ 1068 (1258)
..-+-|+++|+|.+...+ +..+++.
T Consensus 78 -~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 78 -ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred -CCCCEEEEECCCcccChhHHHHHHHH
Confidence 257999999999776644 8888876
No 48
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=57.84 E-value=1.3e+02 Score=32.25 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=65.3
Q ss_pred EEEcCCCcccHHHHHHHHHHHh-cccceEEEEEeeecccccceeccCCccCC--CcccCCCCCCCchhHHHHHHHHHHHH
Q 000842 150 YVLDPATVCGLEVIDMIMSLYE-NHFPLRFGVILYSSKFIKSIEINGGELHS--PVAEDDSPVNEDISSLIIRLFLFIKE 226 (1258)
Q Consensus 150 fviDps~~~~~~~l~~l~~~~~-~~~PiR~GlVp~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~iar~f~~l~~ 226 (1258)
+++||-......+=..+..+.. -+-=++|=+||...- +.........+. ..+. .....+.-.+...+...+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~y~a~la~kAA~ 75 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGLM--PDINDFMPRMPINGDFWR----NEPRSSSYPACLAYKAAQ 75 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--SS---S--SB--H----TTHHH----S--BS--HHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccch--HHHHHHHHhcCCCHHHhc----CCCCCCchHHHHHHHHHH
Confidence 5789999988776555555522 121145555666543 111111000000 0000 001122233444455556
Q ss_pred hhChHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhhhHhhcccCCCCCChhhhhhhhccchhhHHHHHHHHHHHHhCC
Q 000842 227 SHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKLGL 306 (1258)
Q Consensus 227 ~~g~~~al~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~rlgi 306 (1258)
-.|.+.+..||.++.+..-.....++. .+.+.+.. +.+ +...+.|.+-+.++...+..+.=....+.+||
T Consensus 76 ~qg~k~~~~fL~~lQ~a~~~~~~~~s~----~~~l~~iA-~~~-----gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~I 145 (176)
T PF13743_consen 76 LQGKKKARRFLRALQEALFLEGKNYSD----EELLLEIA-EEL-----GLDVEMFKEDLHSDEAKQAFQEDQQLAREMGI 145 (176)
T ss_dssp TTT-H--HHHHHHHHHHHHTS---TTS----HHHHHHHH-HHT-----T--HHHHHHHHTSHHHHHHHHHHHHHHHHTT-
T ss_pred HhChhhHHHHHHHHHHHHHhcCCCCCH----HHHHHHHH-HHh-----CCCHHHHHHHHhChHHHHHHHHHHHHHHHcCC
Confidence 669999999999987654221111111 12222222 211 23444555555555555666666788889999
Q ss_pred CccCceeEEc
Q 000842 307 TKLKCCLLMN 316 (1258)
Q Consensus 307 ~~~~p~vlvN 316 (1258)
.+.+..|++|
T Consensus 146 ~~~Ptlvi~~ 155 (176)
T PF13743_consen 146 TGFPTLVIFN 155 (176)
T ss_dssp SSSSEEEEE-
T ss_pred CCCCEEEEEe
Confidence 7655556667
No 49
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=55.49 E-value=1.9e+02 Score=31.62 Aligned_cols=46 Identities=9% Similarity=-0.071 Sum_probs=37.3
Q ss_pred CChhhhhhhhccchhhHHHHHHHHHHHHhCCCccCceeEEcceeccC
Q 000842 276 PPQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSES 322 (1258)
Q Consensus 276 ~~~~~~~~l~~~~~~d~~~~~~~~f~~rlgi~~~~p~vlvNG~~~~~ 322 (1258)
.+.+.++..+.+..+...+....+-.+++||.+ .|.++|||..+-.
T Consensus 135 ld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~g-tPtfiInGky~v~ 180 (207)
T PRK10954 135 VKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRG-VPAMFVNGKYMVN 180 (207)
T ss_pred CCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCC-CCEEEECCEEEEc
Confidence 455677888888888888888888889999954 5999999998643
No 50
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=51.22 E-value=3.6e+02 Score=29.42 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHHHhhcCCChHHHhhhcCccchhhhHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEec
Q 000842 512 VCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVTF 570 (1258)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~g~~~~v~NGR~i~ 570 (1258)
+.+.+...+++.+.+...+.+........ ......+.+|+. |.+++++|||++-
T Consensus 126 L~~~a~~~Gld~~~f~~~l~s~~~~~~v~----~~~~~a~~~gI~-gtPtfiInGky~v 179 (207)
T PRK10954 126 IRDVFIKAGVKGEDYDAAWNSFVVKSLVA----QQEKAAADLQLR-GVPAMFVNGKYMV 179 (207)
T ss_pred HHHHHHHcCCCHHHHHHHHhChHHHHHHH----HHHHHHHHcCCC-CCCEEEECCEEEE
Confidence 33445567888888887766533222221 122234556875 8899999999974
No 51
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=49.32 E-value=2.3e+02 Score=32.69 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=66.5
Q ss_pred cCceeeEEEEecCc-chHHHHHHHHHHHHHcCCCCeEEEEEeCCCC--hhHHHHHHHHHhhcC------c---EEEEEEe
Q 000842 947 HGKTINIFSIASGH-LYERFLKIMILSVLKNTCRPVKFWFIKNYLS--PQFKDVIPHMAQEYG------F---EYELITY 1014 (1258)
Q Consensus 947 ~~~~InIf~va~~~-~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls--~~~~~~l~~l~~~~~------~---~i~~v~~ 1014 (1258)
..+.|=|++...+. .|...+--.|.|+ ...++.|.+.+|.++.+ ....+.|.....+.. . .+.++.-
T Consensus 23 ~~e~VLILtplrna~~~l~~y~~~L~~L-~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 23 NKESVLILTPLRNAASFLPDYFDNLLSL-TYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred cCCeEEEEEecCCchHHHHHHHHHHHhC-CCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 35668888876544 3444444444444 23335689999998887 555555554332211 1 3333333
Q ss_pred cCCccc----------ccccccccHHHHHHH-HhhcccCCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccC
Q 000842 1015 KWPTWL----------HKQKEKQRIIWAYKI-LFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCD 1082 (1258)
Q Consensus 1015 ~wp~~l----------~~~~~~~r~~~~y~R-LfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~ 1082 (1258)
++.... .-|..+.+. .+=.| .+|-.-+....+-|++||+|++ .....=+=++=-.++.| .||.|-
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~-mAraRN~LL~~aL~p~~swVlWlDaDIv-~~P~~lI~dli~~~kdI-ivPn~~ 177 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRA-MARARNFLLSSALGPWHSWVLWLDADIV-ETPPTLIQDLIAHDKDI-IVPNCW 177 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHH-HHHHHHHHHHhhcCCcccEEEEEecCcc-cCChHHHHHHHhCCCCE-Ecccee
Confidence 332211 011111222 23333 3344444448999999999987 32222122222234444 478884
No 52
>PRK11204 N-glycosyltransferase; Provisional
Probab=48.12 E-value=1.2e+02 Score=36.72 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=69.2
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1028 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r 1028 (1258)
..+-|+..+.++ +..+..++.|++..+-.++.+.|++|+-+++..+.+++++.++. .++++... . ...+..
T Consensus 54 p~vsViIp~yne--~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~--~----n~Gka~ 124 (420)
T PRK11204 54 PGVSILVPCYNE--GENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLA--E----NQGKAN 124 (420)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcC--C----CCCHHH
Confidence 346677655554 56688899999875545788999999888888888888876543 34444322 1 111111
Q ss_pred H-HHHHHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHhcCCCCCeEEEe
Q 000842 1029 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYT 1078 (1258)
Q Consensus 1029 ~-~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~~dl~~~~~aav 1078 (1258)
- ..+... ...|-++++|+|.+...| +.++.+.-.++.-+|+|
T Consensus 125 aln~g~~~--------a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v 168 (420)
T PRK11204 125 ALNTGAAA--------ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAV 168 (420)
T ss_pred HHHHHHHH--------cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEE
Confidence 1 122221 257999999999988765 55555432223234444
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.04 E-value=1.1e+02 Score=32.42 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-HHHHHHHHhhccc
Q 000842 963 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLDVI 1041 (1258)
Q Consensus 963 ~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r-~~~~y~RLfL~~l 1041 (1258)
+..+.-++.|++..+..+..+.|++++-++...+.+.++...++ +.++... . .....+ ...+.... +
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~--~----n~g~~~~~n~~~~~a-~--- 76 (202)
T cd04185 9 LDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLP--E----NLGGAGGFYEGVRRA-Y--- 76 (202)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECc--c----ccchhhHHHHHHHHH-h---
Confidence 56788899999977655678888888877777777777665444 3333221 1 111111 11222111 1
Q ss_pred CCCCCCeEEEEeCceeecCC-chHHHhc
Q 000842 1042 FPLSLEKVIFVDADQVVRAD-MGELYDM 1068 (1258)
Q Consensus 1042 fP~~~drVLYLD~D~Iv~~D-l~eL~~~ 1068 (1258)
....|-++++|+|.++..+ +.+|.+.
T Consensus 77 -~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 77 -ELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred -ccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 2368999999999988754 3344433
No 54
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=44.35 E-value=1.5e+02 Score=31.43 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhhChHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhhhHhhcccCCCCCChhhhhhhhccchhhHH
Q 000842 214 SSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQ 293 (1258)
Q Consensus 214 s~~iar~f~~l~~~~g~~~al~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 293 (1258)
+...++++.+..+. | .....|+..++...-... .+..+.+.+.+.. +. .+.+.+.+...+.++.+...
T Consensus 85 s~~a~~~~~~a~~~-~-~~~~~~~~~lf~a~~~~~----~~i~~~~~l~~~a-~~-----~Gld~~~~~~~~~~~~~~~~ 152 (192)
T cd03022 85 TLRAMRAALAAQAE-G-DAAEAFARAVFRALWGEG----LDIADPAVLAAVA-AA-----AGLDADELLAAADDPAVKAA 152 (192)
T ss_pred hHHHHHHHHHHHhC-c-hhHHHHHHHHHHHHhCCC----CCCCCHHHHHHHH-HH-----cCCCHHHHHHHcCCHHHHHH
Confidence 34556666666553 4 344566666654321100 1111122222222 11 12344566777788888888
Q ss_pred HHHHHHHHHHhCCCccCceeEEcceeccCc
Q 000842 294 SQESSMFVFKLGLTKLKCCLLMNGLVSESS 323 (1258)
Q Consensus 294 ~~~~~~f~~rlgi~~~~p~vlvNG~~~~~~ 323 (1258)
+++..+-..++|+.+ .|.++|||..+-..
T Consensus 153 l~~~~~~a~~~gi~g-vPtfvv~g~~~~G~ 181 (192)
T cd03022 153 LRANTEEAIARGVFG-VPTFVVDGEMFWGQ 181 (192)
T ss_pred HHHHHHHHHHcCCCc-CCeEEECCeeeccc
Confidence 888888888999965 69999999987544
No 55
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=42.56 E-value=1.9e+02 Score=29.05 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000842 963 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1042 (1258)
Q Consensus 963 ~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~RLfL~~lf 1042 (1258)
...+.-++.|+...+..+..+.|+.++-++...+.+..... .+.++... ... ....+. ..-+...
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~--~~~-------g~~~a~-n~~~~~~- 73 (166)
T cd04186 9 LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNG--ENL-------GFGAGN-NQGIREA- 73 (166)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecC--CCc-------ChHHHh-hHHHhhC-
Confidence 56678899999987666788999998877777766665432 33333221 111 111111 1111221
Q ss_pred CCCCCeEEEEeCceeecCC-chHHHhc
Q 000842 1043 PLSLEKVIFVDADQVVRAD-MGELYDM 1068 (1258)
Q Consensus 1043 P~~~drVLYLD~D~Iv~~D-l~eL~~~ 1068 (1258)
+.+-++++|+|.++..+ +..+++.
T Consensus 74 --~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 74 --KGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred --CCCEEEEECCCcEECccHHHHHHHH
Confidence 58999999999987655 5555553
No 56
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=41.39 E-value=2e+02 Score=29.76 Aligned_cols=95 Identities=14% Similarity=0.227 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000842 963 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1042 (1258)
Q Consensus 963 ~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~RLfL~~lf 1042 (1258)
...+.-++.|+...+..++.+.|++++-++...+.+..+.......+..+.-. +. ..+...+..+- + ..
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~n~g-~-~~- 77 (182)
T cd06420 9 PEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQE-DE-------GFRKAKIRNKA-I-AA- 77 (182)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcC-Cc-------chhHHHHHHHH-H-HH-
Confidence 56678899999987766788999988877777777777765443333222111 11 01111111111 1 11
Q ss_pred CCCCCeEEEEeCceeecCC-chHHHhcC
Q 000842 1043 PLSLEKVIFVDADQVVRAD-MGELYDMD 1069 (1258)
Q Consensus 1043 P~~~drVLYLD~D~Iv~~D-l~eL~~~d 1069 (1258)
. .-+-|++||+|.+...+ +..+.+.-
T Consensus 78 a-~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 A-KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred h-cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 1 46899999999987655 55555543
No 57
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=40.58 E-value=2.8e+02 Score=30.45 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=60.3
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1028 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~~--v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r 1028 (1258)
+=|+..+.+ -+..+..++.|++..+..+ +.+.|++++-++...+.+..+.+. .+.++... . ...+.+
T Consensus 31 isVvip~~n--~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~--~----~~g~~~ 99 (251)
T cd06439 31 VTIIIPAYN--EEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFP--E----RRGKAA 99 (251)
T ss_pred EEEEEecCC--cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcC--C----CCChHH
Confidence 555554444 4677889999998765433 788888888888888877777654 34343322 1 111111
Q ss_pred -HHHHHHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHhc
Q 000842 1029 -IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDM 1068 (1258)
Q Consensus 1029 -~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~~ 1068 (1258)
...++. .. .-|-|+++|+|.+...+ +..|++.
T Consensus 100 a~n~gi~-----~a---~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 100 ALNRALA-----LA---TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred HHHHHHH-----Hc---CCCEEEEEccccCcCHHHHHHHHHH
Confidence 112222 11 24889999999988654 6667655
No 58
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=40.39 E-value=1.9e+02 Score=30.65 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcC-cEEEEEEecCCccccccccccc-HHHHHHHHhh
Q 000842 961 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYG-FEYELITYKWPTWLHKQKEKQR-IIWAYKILFL 1038 (1258)
Q Consensus 961 ~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~-~~i~~v~~~wp~~l~~~~~~~r-~~~~y~RLfL 1038 (1258)
+.+..+..++.|++..+-.++.+.|++++-++...+.+..+...+. ..+.++... .. . ....+.+ ...++.
T Consensus 11 n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~-~-g~~~~~~~~n~g~~---- 83 (196)
T cd02520 11 GVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGG-EK-V-GINPKVNNLIKGYE---- 83 (196)
T ss_pred CCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecC-Cc-C-CCCHhHHHHHHHHH----
Confidence 3355678889999976545689999998888888888888876654 344444332 11 0 0000111 111221
Q ss_pred cccCCCCCCeEEEEeCceeecC-CchHHHhc
Q 000842 1039 DVIFPLSLEKVIFVDADQVVRA-DMGELYDM 1068 (1258)
Q Consensus 1039 ~~lfP~~~drVLYLD~D~Iv~~-Dl~eL~~~ 1068 (1258)
. ..-+=++++|+|.++.. -|..+...
T Consensus 84 -~---a~~d~i~~~D~D~~~~~~~l~~l~~~ 110 (196)
T cd02520 84 -E---ARYDILVISDSDISVPPDYLRRMVAP 110 (196)
T ss_pred -h---CCCCEEEEECCCceEChhHHHHHHHH
Confidence 1 24789999999998754 34445443
No 59
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=39.65 E-value=2.6e+02 Score=28.99 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHH---cCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhc
Q 000842 963 ERFLKIMILSVLK---NTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLD 1039 (1258)
Q Consensus 963 ~~~~~v~i~Sil~---n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~RLfL~ 1039 (1258)
+..+..++.|+.. .+..++.+.|++++-++...+.++.+..++. .+.++... .. ..+. .++.. -+.
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~-~n-----~G~~---~a~n~-g~~ 77 (181)
T cd04187 9 EENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLS-RN-----FGQQ---AALLA-GLD 77 (181)
T ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEec-CC-----CCcH---HHHHH-HHH
Confidence 3444555555543 3334678888888888877777777765543 34444332 11 1111 11111 122
Q ss_pred ccCCCCCCeEEEEeCceeecC-CchHHHhc
Q 000842 1040 VIFPLSLEKVIFVDADQVVRA-DMGELYDM 1068 (1258)
Q Consensus 1040 ~lfP~~~drVLYLD~D~Iv~~-Dl~eL~~~ 1068 (1258)
.. .-+-|+++|+|..... .+..++..
T Consensus 78 ~a---~~d~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 78 HA---RGDAVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred hc---CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 21 2488999999987754 47778766
No 60
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=36.97 E-value=2.9e+02 Score=33.94 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=64.8
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1028 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r 1028 (1258)
..+=|+..+.++ +..+..++.|+++.+-.++.+.+++|+-+++..+.+.++..++. .++++... . ...+.+
T Consensus 75 p~vsViIP~yNE--~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~--~----n~Gka~ 145 (444)
T PRK14583 75 PLVSILVPCFNE--GLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLA--H----NQGKAI 145 (444)
T ss_pred CcEEEEEEeCCC--HHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeC--C----CCCHHH
Confidence 347777666654 55678899999876545789999998888888888888876553 34444332 1 111211
Q ss_pred HH-HHHHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHh
Q 000842 1029 II-WAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1067 (1258)
Q Consensus 1029 ~~-~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~ 1067 (1258)
-. .+.. . ...|-++.+|+|.+...| +..+..
T Consensus 146 AlN~gl~-------~-a~~d~iv~lDAD~~~~~d~L~~lv~ 178 (444)
T PRK14583 146 ALRMGAA-------A-ARSEYLVCIDGDALLDKNAVPYLVA 178 (444)
T ss_pred HHHHHHH-------h-CCCCEEEEECCCCCcCHHHHHHHHH
Confidence 11 1211 1 257999999999988765 455543
No 61
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=36.24 E-value=3.3e+02 Score=29.57 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhH-HHHHHHHHhhcCcEEEEEEecCCccccccccccc-HHHHHHHHhhcc
Q 000842 963 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQF-KDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLDV 1040 (1258)
Q Consensus 963 ~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~-~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r-~~~~y~RLfL~~ 1040 (1258)
...+..++.|+...+-.++.++|++++-++.. .+.+..++++++..+.++... +. ...+.. ...++. .
T Consensus 11 ~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~----~G~~~~a~n~g~~-----~ 80 (236)
T cd06435 11 PEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PL----PGAKAGALNYALE-----R 80 (236)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CC----CCCchHHHHHHHH-----h
Confidence 35788899999865545688888887765543 466667766666666665443 11 111111 112222 2
Q ss_pred cCCCCCCeEEEEeCceeecC-CchHHHhcCCCCCeEEEe
Q 000842 1041 IFPLSLEKVIFVDADQVVRA-DMGELYDMDIKGRPLAYT 1078 (1258)
Q Consensus 1041 lfP~~~drVLYLD~D~Iv~~-Dl~eL~~~dl~~~~~aav 1078 (1258)
.- .+.|=|+++|+|.++.. -|.++... +...-++++
T Consensus 81 a~-~~~d~i~~lD~D~~~~~~~l~~l~~~-~~~~~~~~v 117 (236)
T cd06435 81 TA-PDAEIIAVIDADYQVEPDWLKRLVPI-FDDPRVGFV 117 (236)
T ss_pred cC-CCCCEEEEEcCCCCcCHHHHHHHHHH-hcCCCeeEE
Confidence 22 24688999999987754 34455433 233334544
No 62
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=35.98 E-value=58 Score=38.01 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=72.1
Q ss_pred cCceeeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhh--cCcEEEEEEecCCccccccc
Q 000842 947 HGKTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQE--YGFEYELITYKWPTWLHKQK 1024 (1258)
Q Consensus 947 ~~~~InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~--~~~~i~~v~~~wp~~l~~~~ 1024 (1258)
++. |=|.+++.|. |-..-. =..|-..+...++|+.+.+..+.+.++.=..+... .-...+++.++-.. +..
T Consensus 62 ~c~-vvV~saIFG~-yD~l~q--P~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp-~~d-- 134 (305)
T PF04765_consen 62 KCR-VVVYSAIFGN-YDKLRQ--PKNISEYSKKNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLP-YDD-- 134 (305)
T ss_pred cCC-EEEEEEecCC-CccccC--chhhCHHHhcCccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCC-Ccc--
Confidence 566 6677777664 222100 01122223357999999998877655432111111 01233444443110 111
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCceeecCCchHHHhcCC--CCCeEEEeec
Q 000842 1025 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDI--KGRPLAYTPF 1080 (1258)
Q Consensus 1025 ~~~r~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl~eL~~~dl--~~~~~aav~d 1080 (1258)
.|...-+.+++.-.+|| +++--||+|+-+.+.+|+..|.+--+ ++..+|+.+.
T Consensus 135 --~rr~~r~~K~lpHrlfp-~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H 189 (305)
T PF04765_consen 135 --PRRNGRIPKLLPHRLFP-NYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKH 189 (305)
T ss_pred --hhhcCcccceeccccCC-CCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCC
Confidence 22223355677778999 79999999999999999999886544 5677888653
No 63
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=34.24 E-value=1e+02 Score=37.13 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=38.6
Q ss_pred eEEEEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000842 791 ALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 846 (1258)
Q Consensus 791 ~ilieG~~~d~~~-~~p~GlqL~L~~~~~~~~~dTivManlGYfQlka~PG~w~l~l 846 (1258)
+.-|.|...|..+ .|..|..+.+..... .|++ .--|.|.+..+||.|.|++
T Consensus 296 ~~gI~G~V~D~~~g~pl~~AtV~V~g~~~----~~~T-d~~G~f~~~l~pG~ytl~v 347 (375)
T cd03863 296 HRGVRGFVLDATDGRGILNATISVADINH----PVTT-YKDGDYWRLLVPGTYKVTA 347 (375)
T ss_pred cCeEEEEEEeCCCCCCCCCeEEEEecCcC----ceEE-CCCccEEEccCCeeEEEEE
Confidence 4567888999755 899999999865332 2333 2349999999999999986
No 64
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=33.29 E-value=5e+02 Score=29.66 Aligned_cols=150 Identities=16% Similarity=0.224 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcC-CCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCc-ccccccccccHHHHHHHHhhcccCC
Q 000842 966 LKIMILSVLKNT-CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPT-WLHKQKEKQRIIWAYKILFLDVIFP 1043 (1258)
Q Consensus 966 ~~v~i~Sil~n~-~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~-~l~~~~~~~r~~~~y~RLfL~~lfP 1043 (1258)
+.-.+.|+.... +..+.+.|++++-++.+.+.|.++++.++....+ ...-+. .+.. .+.|- .+. ..
T Consensus 19 l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i-~~~~~~~~f~~--a~arN-~g~------~~-- 86 (281)
T PF10111_consen 19 LRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYI-RHEDNGEPFSR--AKARN-IGA------KY-- 86 (281)
T ss_pred HHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEE-EcCCCCCCcCH--HHHHH-HHH------HH--
Confidence 344456666532 3578898888888888888899998877665222 121011 1111 11111 111 11
Q ss_pred CCCCeEEEEeCceeecCC-chHHHh----cCCCCCeEEEeec---cC--CCCCCCC-ccccccchhhccCC------CCC
Q 000842 1044 LSLEKVIFVDADQVVRAD-MGELYD----MDIKGRPLAYTPF---CD--NNKDMDG-YRFWRQGFWKDHLR------GRP 1106 (1258)
Q Consensus 1044 ~~~drVLYLD~D~Iv~~D-l~eL~~----~dl~~~~~aav~d---~~--~~~~~~g-~~~w~~gyw~~~l~------~~~ 1106 (1258)
..-+-|+++|+|+++.-| +..+.+ ++-....+.+.|- +. +..-... ...|...+...... +..
T Consensus 87 A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (281)
T PF10111_consen 87 ARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFI 166 (281)
T ss_pred cCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccc
Confidence 157999999999998644 444555 4444334444442 11 0000000 01222222212221 134
Q ss_pred ceecceeeeehHHHHhhcHHH
Q 000842 1107 YHISALYVVDLKRFRETAAGD 1127 (1258)
Q Consensus 1107 YfNSGv~liNL~~~R~~~~~~ 1127 (1258)
++.+|.++++-..|.+.+..|
T Consensus 167 ~~~s~~~~i~r~~f~~iGGfD 187 (281)
T PF10111_consen 167 AFASSCFLINREDFLEIGGFD 187 (281)
T ss_pred cccceEEEEEHHHHHHhCCCC
Confidence 678899999999999876543
No 65
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=32.96 E-value=3.1e+02 Score=35.94 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=69.8
Q ss_pred ceeeEEEEecCcchH---HHHHHHHHHHHHcCC-CCeEEEEEeCCCChhHHH----HHHHHHhhcCc--EEEEEEecCCc
Q 000842 949 KTINIFSIASGHLYE---RFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKD----VIPHMAQEYGF--EYELITYKWPT 1018 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~---~~~~v~i~Sil~n~~-~~v~f~il~~~ls~~~~~----~l~~l~~~~~~--~i~~v~~~wp~ 1018 (1258)
..+-|+.-++++.-+ ..+..++.|+..-.. .++.|++++|.-+++... .+.+++++++. .+.+..-.+
T Consensus 124 ~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~-- 201 (691)
T PRK05454 124 ARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR-- 201 (691)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc--
Confidence 446777667775432 346777889886433 579999999887766432 35567777643 332221111
Q ss_pred ccccccccccHHHHHHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHhcCCCCCeEEEee
Q 000842 1019 WLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYTP 1079 (1258)
Q Consensus 1019 ~l~~~~~~~r~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~~dl~~~~~aav~ 1079 (1258)
+...|..-+..+.+.+ -..+|-|+-+|+|.+..+| +..+...-..+--+|+|.
T Consensus 202 ---n~~~KaGNl~~~~~~~-----~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 202 ---NVGRKAGNIADFCRRW-----GGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred ---CCCccHHHHHHHHHhc-----CCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 1111222222222221 1368999999999999887 566664322233467764
No 66
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=32.27 E-value=87 Score=32.33 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=36.4
Q ss_pred EEEEEeccCCC-CCCCCeEEEEecCCCC--cccceEEEecceeeee-----eeCCceeEEEe
Q 000842 793 VLTGHCSEKDH-EPPQGLQLILGTKSTP--HLVDTLVMANLGYWQM-----KVSPGVWYLQL 846 (1258)
Q Consensus 793 lieG~~~d~~~-~~p~GlqL~L~~~~~~--~~~dTivManlGYfQl-----ka~PG~w~l~l 846 (1258)
.|.||+.|..+ .|..|+++.|....+. ....+.+-..-|-|.+ ...||.|.|..
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F 89 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVF 89 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEE
Confidence 49999999987 9999999999754321 1122333334488875 24577777775
No 67
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=31.27 E-value=5.6e+02 Score=32.30 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=72.1
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCC-CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccc
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1027 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~-~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~ 1027 (1258)
..+=|+..| +|.+.-+..|+.|++...+ .++.++++.++-+++..+.+.+++.+|.. ++.+... . ...+.|.
T Consensus 66 p~vaIlIPA--~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~-v~~vv~~--~--~gp~~Ka 138 (504)
T PRK14716 66 KRIAIFVPA--WREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPR-VHLVIVP--H--DGPTSKA 138 (504)
T ss_pred CceEEEEec--cCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCC-eEEEEeC--C--CCCCCHH
Confidence 346666544 4557788899999886654 57899999988888888888888877643 3333332 1 0112232
Q ss_pred cHH-HHHHHHhhcccCC-CCCCeEEEEeCceeecCCchHHHhcCCCC
Q 000842 1028 RII-WAYKILFLDVIFP-LSLEKVIFVDADQVVRADMGELYDMDIKG 1072 (1258)
Q Consensus 1028 r~~-~~y~RLfL~~lfP-~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~ 1072 (1258)
.-. +++...+...--. ...|=|+.+|||.++.-|.-.+++-.+.+
T Consensus 139 ~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~~ 185 (504)
T PRK14716 139 DCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLPR 185 (504)
T ss_pred HHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcCC
Confidence 222 3443332211111 13588999999999888877766544444
No 68
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=30.27 E-value=1.2e+02 Score=33.95 Aligned_cols=79 Identities=24% Similarity=0.256 Sum_probs=47.8
Q ss_pred cchH-HHHHHHHHHHHHcCC----------CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc
Q 000842 960 HLYE-RFLKIMILSVLKNTC----------RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1028 (1258)
Q Consensus 960 ~~Y~-~~~~v~i~Sil~n~~----------~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r 1028 (1258)
+|.+ ..+.-+|.||+...- ..+.++|+.|+.+. .+ ..|..
T Consensus 6 yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d---------------------~~--------~gk~~ 56 (244)
T cd04190 6 YNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK---------------------KN--------RGKRD 56 (244)
T ss_pred ecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc---------------------cc--------CcchH
Confidence 3443 678889999986533 26888999888877 00 01111
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHh
Q 000842 1029 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1067 (1258)
Q Consensus 1029 ~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~ 1067 (1258)
....+.+.+...+.-..-+-|+.+|+|.++..| |..++.
T Consensus 57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~ 96 (244)
T cd04190 57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYK 96 (244)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHH
Confidence 111112222222323368999999999999876 566663
No 69
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=29.65 E-value=2.5e+02 Score=33.36 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=61.4
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcC--CCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcc-ccccc---
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTW-LHKQK--- 1024 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~--~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~-l~~~~--- 1024 (1258)
+.|+.+|++. ..++.-++.||+++. ..+..++|..|+-.++..+.+.. ++..+..+ ..+.. .....
T Consensus 2 ~PVlv~ayNR--p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~----~~~~i~~i--~~~~~~~~~~~~~~ 73 (334)
T cd02514 2 IPVLVIACNR--PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKS----FGDGVTHI--QHPPISIKNVNPPH 73 (334)
T ss_pred cCEEEEecCC--HHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHh----hccccEEE--EcccccccccCccc
Confidence 4566667765 556788999999874 35788999988866654444333 32233322 11111 11100
Q ss_pred -c-cccHHHHHHHHhhcccCCC-CCCeEEEEeCceeecCCchHHH
Q 000842 1025 -E-KQRIIWAYKILFLDVIFPL-SLEKVIFVDADQVVRADMGELY 1066 (1258)
Q Consensus 1025 -~-~~r~~~~y~RLfL~~lfP~-~~drVLYLD~D~Iv~~Dl~eL~ 1066 (1258)
. ....++..++.-+..+|-. +.++||.||.|.++--|.-+.+
T Consensus 74 ~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf 118 (334)
T cd02514 74 KFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYF 118 (334)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHH
Confidence 0 0011122333345555521 4899999999999888855544
No 70
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=29.57 E-value=69 Score=34.72 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=55.0
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCc-EEEEEEecCCcccccccccccH
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGF-EYELITYKWPTWLHKQKEKQRI 1029 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~-~i~~v~~~wp~~l~~~~~~~r~ 1029 (1258)
|=|+..+.+. ...+.-++.|+++.+-.+++++|+++.-+++..+.++.++..+.. .++++... .... ...+.+-
T Consensus 3 v~Vvip~~~~--~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~--~~~g-~~~k~~a 77 (228)
T PF13641_consen 3 VSVVIPAYNE--DDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP--RNPG-PGGKARA 77 (228)
T ss_dssp EEEE--BSS---HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE------HH-HHHHHHH
T ss_pred EEEEEEecCC--HHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC--CCCC-cchHHHH
Confidence 3344444443 456778999999643357999999988777777888888776653 45554332 1010 0111111
Q ss_pred -HHHHHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHh
Q 000842 1030 -IWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1067 (1258)
Q Consensus 1030 -~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~ 1067 (1258)
..+.. .. ..+-|+++|+|.++..| |.++..
T Consensus 78 ~n~~~~-----~~---~~d~i~~lD~D~~~~p~~l~~~~~ 109 (228)
T PF13641_consen 78 LNEALA-----AA---RGDYILFLDDDTVLDPDWLERLLA 109 (228)
T ss_dssp HHHHHH-----H------SEEEEE-SSEEE-CHHHHHHHH
T ss_pred HHHHHH-----hc---CCCEEEEECCCcEECHHHHHHHHH
Confidence 12222 11 37899999999988543 455443
No 71
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=29.35 E-value=1e+02 Score=37.18 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=39.7
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000842 791 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 846 (1258)
Q Consensus 791 ~ilieG~~~d~~~~~p~GlqL~L~~~~~~~~~dTivManlGYfQlka~PG~w~l~l 846 (1258)
+.=|.|+..|.++.|..|..+.+.... ...+++=..-|+|.+...||-|.+.+
T Consensus 294 ~~gI~G~V~D~~g~pi~~A~V~v~g~~---~~~~~~T~~~G~y~~~l~pG~Y~v~v 346 (376)
T cd03866 294 HLGVKGQVFDSNGNPIPNAIVEVKGRK---HICPYRTNVNGEYFLLLLPGKYMINV 346 (376)
T ss_pred cCceEEEEECCCCCccCCeEEEEEcCC---ceeEEEECCCceEEEecCCeeEEEEE
Confidence 445889999986699999999996432 11233344459999999999999886
No 72
>PRK06437 hypothetical protein; Provisional
Probab=28.65 E-value=49 Score=29.66 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.4
Q ss_pred HHHhCCCCCCcEEEEcCEEec
Q 000842 550 HRQLGVESGANAVITNGRVTF 570 (1258)
Q Consensus 550 ~~~l~l~~g~~~~v~NGR~i~ 570 (1258)
.+.||+++...++.+||++++
T Consensus 27 L~~Lgi~~~~vaV~vNg~iv~ 47 (67)
T PRK06437 27 IKDLGLDEEEYVVIVNGSPVL 47 (67)
T ss_pred HHHcCCCCccEEEEECCEECC
Confidence 345799999999999999997
No 73
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=27.36 E-value=30 Score=41.08 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=16.7
Q ss_pred EEEeCceeecCCchHHHh
Q 000842 1050 IFVDADQVVRADMGELYD 1067 (1258)
Q Consensus 1050 LYLD~D~Iv~~Dl~eL~~ 1067 (1258)
||||+|+||.+++..|-|
T Consensus 242 vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 242 VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred EEeeccEEEecccccccc
Confidence 899999999999999875
No 74
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=27.27 E-value=3.4e+02 Score=28.96 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhc
Q 000842 962 YERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLD 1039 (1258)
Q Consensus 962 Y~~~~~v~i~Sil~n~~~~--v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~RLfL~ 1039 (1258)
....+.-+|.|++..+..+ +.++|++++-++...+.+.......+..+..+... . .....+. .+..+ -+.
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~--~--~~~~g~~---~a~n~-g~~ 79 (229)
T cd04192 8 EAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNS--R--VSISGKK---NALTT-AIK 79 (229)
T ss_pred cHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeecc--C--cccchhH---HHHHH-HHH
Confidence 4567888999998876645 88999988776666666651222223444443332 1 0111011 11111 111
Q ss_pred ccCCCCCCeEEEEeCceeecC-CchHHHh
Q 000842 1040 VIFPLSLEKVIFVDADQVVRA-DMGELYD 1067 (1258)
Q Consensus 1040 ~lfP~~~drVLYLD~D~Iv~~-Dl~eL~~ 1067 (1258)
. ..-|-|+++|+|.++.. -|..+..
T Consensus 80 ~---~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 80 A---AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred H---hcCCEEEEECCCcccCHHHHHHHHH
Confidence 1 14799999999998764 3444554
No 75
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=27.08 E-value=1e+02 Score=37.03 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=39.7
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000842 791 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 846 (1258)
Q Consensus 791 ~ilieG~~~d~~~~~p~GlqL~L~~~~~~~~~dTivManlGYfQlka~PG~w~l~l 846 (1258)
|.=|.|+.+|.++.|..|..+.+.... .++ =...|+|.+..+||.|.+++
T Consensus 286 ~~gI~G~V~d~~g~pi~~A~V~v~g~~-----~~~-T~~~G~y~~~L~pG~y~v~v 335 (363)
T cd06245 286 HKGVHGVVTDKAGKPISGATIVLNGGH-----RVY-TKEGGYFHVLLAPGQHNINV 335 (363)
T ss_pred CcEEEEEEEcCCCCCccceEEEEeCCC-----ceE-eCCCcEEEEecCCceEEEEE
Confidence 667899999986699999999996531 233 23459999999999999986
No 76
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=26.72 E-value=4.8e+02 Score=28.04 Aligned_cols=101 Identities=16% Similarity=0.276 Sum_probs=57.2
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1028 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~~--v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r 1028 (1258)
|=|+..+.+. -...+..++.|++.-+-.+ +.+.|++++-++...+.+..+...+. +.++... . +...+..
T Consensus 3 vsviip~~n~-~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~--~---~~~~~~~ 74 (234)
T cd06421 3 VDVFIPTYNE-PLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYG--YRYLTRP--D---NRHAKAG 74 (234)
T ss_pred eEEEEecCCC-cHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccC--ceEEEeC--C---CCCCcHH
Confidence 3344444443 2346778899999655444 78888888877777777777765442 2222221 1 0111111
Q ss_pred -HHHHHHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHh
Q 000842 1029 -IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1067 (1258)
Q Consensus 1029 -~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~ 1067 (1258)
...+... . .-+-|+++|+|.++..| +..|..
T Consensus 75 ~~n~~~~~------a--~~d~i~~lD~D~~~~~~~l~~l~~ 107 (234)
T cd06421 75 NLNNALAH------T--TGDFVAILDADHVPTPDFLRRTLG 107 (234)
T ss_pred HHHHHHHh------C--CCCEEEEEccccCcCccHHHHHHH
Confidence 1122211 1 57999999999988654 333443
No 77
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=26.29 E-value=5.6e+02 Score=27.58 Aligned_cols=107 Identities=11% Similarity=0.170 Sum_probs=61.6
Q ss_pred eeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-H
Q 000842 951 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-I 1029 (1258)
Q Consensus 951 InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r-~ 1029 (1258)
|-|+.++.+. -...+..++.|+...+ ++.++|+.++-++...+.+...... ..+..+.-. ...+.. .
T Consensus 2 isVvIp~~ne-~~~~l~~~l~sl~~q~--~~eiivvdd~s~d~~~~~l~~~~~~--~~~~v~~~~-------~~g~~~a~ 69 (235)
T cd06434 2 VTVIIPVYDE-DPDVFRECLRSILRQK--PLEIIVVTDGDDEPYLSILSQTVKY--GGIFVITVP-------HPGKRRAL 69 (235)
T ss_pred eEEEEeecCC-ChHHHHHHHHHHHhCC--CCEEEEEeCCCChHHHHHHHhhccC--CcEEEEecC-------CCChHHHH
Confidence 3455555553 1277888999999877 7889999988887766666333221 222222211 111111 1
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEeCceeecCC-chHHHhcCCCCCeEEEe
Q 000842 1030 IWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYT 1078 (1258)
Q Consensus 1030 ~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~~dl~~~~~aav 1078 (1258)
..+... ..-|-|+++|+|.++..| +..+...=. +.-++++
T Consensus 70 n~g~~~--------a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v 110 (235)
T cd06434 70 AEGIRH--------VTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGV 110 (235)
T ss_pred HHHHHH--------hCCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEE
Confidence 122211 157999999999999866 666664422 3344555
No 78
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=25.56 E-value=6.9e+02 Score=26.12 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEeCCC-ChhHHHHHHHHHhhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 000842 964 RFLKIMILSVLKNTCRPVKFWFIKNYL-SPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1042 (1258)
Q Consensus 964 ~~~~v~i~Sil~n~~~~v~f~il~~~l-s~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~RLfL~~lf 1042 (1258)
.++..++.||+..+-.+..+.|+.++- ++...+.+..+.++++ +.++... . + .....+...-+. .
T Consensus 13 ~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~--~---n----~G~~~a~N~g~~---~ 78 (201)
T cd04195 13 EFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLE--K---N----RGLGKALNEGLK---H 78 (201)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcC--c---c----ccHHHHHHHHHH---h
Confidence 478899999998765567777777766 5556666777776665 4444332 1 0 111111111111 1
Q ss_pred CCCCCeEEEEeCceeecC-CchHHHh
Q 000842 1043 PLSLEKVIFVDADQVVRA-DMGELYD 1067 (1258)
Q Consensus 1043 P~~~drVLYLD~D~Iv~~-Dl~eL~~ 1067 (1258)
..-+=|+++|+|.+... -+..++.
T Consensus 79 -a~gd~i~~lD~Dd~~~~~~l~~~~~ 103 (201)
T cd04195 79 -CTYDWVARMDTDDISLPDRFEKQLD 103 (201)
T ss_pred -cCCCEEEEeCCccccCcHHHHHHHH
Confidence 25788999999987654 3444443
No 79
>PF03666 NPR3: Nitrogen Permease regulator of amino acid transport activity 3; InterPro: IPR005365 This protein, also known in yeasts as Rmd11, complexes with NPR2, PF06218 from PFAM. This complex heterodimer is responsible for inactivating TORC1. an evolutionarily conserved protein complex that controls cell size via nutritional input signals, specifically, in response to amino acid starvation [].
Probab=25.54 E-value=2.7e+02 Score=34.57 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=22.8
Q ss_pred hhhhhccchhhHHHHHHHHHHHHhCCCccCceeEEcc
Q 000842 281 LLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNG 317 (1258)
Q Consensus 281 ~~~l~~~~~~d~~~~~~~~f~~rlgi~~~~p~vlvNG 317 (1258)
+..++..+.....+++.-+=+.+.|+ -.+.+|+
T Consensus 188 ~~~il~~SsLAr~L~~iy~~Is~s~i----A~l~in~ 220 (452)
T PF03666_consen 188 YEEILKKSSLARALKDIYDAISTSGI----AHLTINN 220 (452)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCe----EEEEECC
Confidence 45566666666666666666667777 6789998
No 80
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=25.32 E-value=4.8e+02 Score=29.60 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=57.8
Q ss_pred HHHHHHHHHHc-----CCCCeEEEEEeCCCChhHH----HHHHHHHhhcCc--EEEEEEecCCcccccccccccHHHHHH
Q 000842 966 LKIMILSVLKN-----TCRPVKFWFIKNYLSPQFK----DVIPHMAQEYGF--EYELITYKWPTWLHKQKEKQRIIWAYK 1034 (1258)
Q Consensus 966 ~~v~i~Sil~n-----~~~~v~f~il~~~ls~~~~----~~l~~l~~~~~~--~i~~v~~~wp~~l~~~~~~~r~~~~y~ 1034 (1258)
+...+.|.+.. ....+.+++++|.=+++.. +.+.++++++.. .+.++.-. . + . ..-.++.
T Consensus 15 l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~--~---~---~-g~Kag~l 85 (254)
T cd04191 15 VFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRR--E---N---T-GRKAGNI 85 (254)
T ss_pred HHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcC--C---C---C-CccHHHH
Confidence 55667777652 1236888888877665432 234556655533 33332221 1 0 1 1113444
Q ss_pred HHhhcccCCCCCCeEEEEeCceeecCC-chHHHhcCCCCCeEEEee
Q 000842 1035 ILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYTP 1079 (1258)
Q Consensus 1035 RLfL~~lfP~~~drVLYLD~D~Iv~~D-l~eL~~~dl~~~~~aav~ 1079 (1258)
+-++...- ...+-|+.+|+|.++..| |..+...-..+.-+|+|.
T Consensus 86 ~~~~~~~~-~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq 130 (254)
T cd04191 86 ADFCRRWG-SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQ 130 (254)
T ss_pred HHHHHHhC-CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 44554322 257899999999988755 777775433344577774
No 81
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=24.82 E-value=5.2e+02 Score=30.91 Aligned_cols=102 Identities=13% Similarity=0.165 Sum_probs=61.7
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcC-cEEEEEEecCCcccccccccc
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYG-FEYELITYKWPTWLHKQKEKQ 1027 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~-~~i~~v~~~wp~~l~~~~~~~ 1027 (1258)
..+=|+..+.|+ +..+.-++.|++.-+-.++.+.+++++-++...+.++++.+.+. ..++++ .+ +. + ....
T Consensus 41 p~VSViiP~~ne--e~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v-~~-~~---~-~G~~ 112 (373)
T TIGR03472 41 PPVSVLKPLHGD--EPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLV-ID-AR---R-HGPN 112 (373)
T ss_pred CCeEEEEECCCC--ChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEE-EC-CC---C-CCCC
Confidence 346666655554 66788999999976544588887777766666777888876653 456655 22 11 0 0001
Q ss_pred cHHHHHHHHhhcccCCCCCCeEEEEeCceeecCCc
Q 000842 1028 RIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADM 1062 (1258)
Q Consensus 1028 r~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~Dl 1062 (1258)
...++.... +.. ..-|-++++|+|+++..|-
T Consensus 113 ~K~~~l~~~-~~~---a~ge~i~~~DaD~~~~p~~ 143 (373)
T TIGR03472 113 RKVSNLINM-LPH---ARHDILVIADSDISVGPDY 143 (373)
T ss_pred hHHHHHHHH-HHh---ccCCEEEEECCCCCcChhH
Confidence 111222222 222 2579999999999886553
No 82
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=23.89 E-value=3.1e+02 Score=30.73 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=30.6
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhcccceEEEEEee
Q 000842 146 FHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILY 183 (1258)
Q Consensus 146 ~nlVfviDps~~~~~~~l~~l~~~~~~~~PiR~GlVp~ 183 (1258)
..++++.||..+-..++...+..+.+.|+=+|+=.+|+
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 46889999999999888888888888887777744444
No 83
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=23.62 E-value=7e+02 Score=26.35 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-HHHHHHHHhhc
Q 000842 961 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLD 1039 (1258)
Q Consensus 961 ~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r-~~~~y~RLfL~ 1039 (1258)
|-+..+.-+|.|++.-+ .++.++|++++-++...+.++ +. .....+.++...++. ....+.. ..+++.+.--.
T Consensus 7 Ne~~~l~~~l~sl~~~~-~~~eIivvdd~S~D~t~~~~~-~~-~~~~~v~~i~~~~~~---~~~Gk~~aln~g~~~~~~~ 80 (191)
T cd06436 7 NEEAVIQRTLASLLRNK-PNFLVLVIDDASDDDTAGIVR-LA-ITDSRVHLLRRHLPN---ARTGKGDALNAAYDQIRQI 80 (191)
T ss_pred ccHHHHHHHHHHHHhCC-CCeEEEEEECCCCcCHHHHHh-he-ecCCcEEEEeccCCc---CCCCHHHHHHHHHHHHhhh
Confidence 44677888999999766 568899999888887777766 22 222345555432221 0111111 11333322110
Q ss_pred c---cCCCCCCeEEEEeCceeecCCc
Q 000842 1040 V---IFPLSLEKVIFVDADQVVRADM 1062 (1258)
Q Consensus 1040 ~---lfP~~~drVLYLD~D~Iv~~Dl 1062 (1258)
. =.+..-+-|+++|+|.++..+.
T Consensus 81 ~~~~g~~~~~d~v~~~DaD~~~~~~~ 106 (191)
T cd06436 81 LIEEGADPERVIIAVIDADGRLDPNA 106 (191)
T ss_pred ccccccCCCccEEEEECCCCCcCHhH
Confidence 0 0111246799999998876543
No 84
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=23.07 E-value=3e+02 Score=33.87 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=56.1
Q ss_pred cCceeeEEEEecCc-chHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEe-cCCcc-cc
Q 000842 947 HGKTINIFSIASGH-LYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY-KWPTW-LH 1021 (1258)
Q Consensus 947 ~~~~InIf~va~~~-~Y~~~~~v~i~Sil~n~~--~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~-~wp~~-l~ 1021 (1258)
....+.|+.+||+. .| +.-++.||+++.+ +.+.+.|..++-.++..+. +..|+-.++.+.- +.-+. ..
T Consensus 91 ~~~~~pVlV~AcNRp~y---l~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~v----i~~y~~~v~~i~~~~~~~i~~~ 163 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPDY---LRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEV----IKSYGDQVTYIQHPDFSPITIP 163 (434)
T ss_dssp ------EEEEESS-TT----HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHH----HHGGGGGSEEEE-S--S-----
T ss_pred CCCcceEEEEecCCcHH---HHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHH----HHHhhhhheeeecCCcCCceeC
Confidence 34568899899987 44 5578889998755 3455555556555544443 3444433333322 11010 11
Q ss_pred ccc--cc-ccHHHHHHHHhhcccCCC-CCCeEEEEeCceeecCCchHHHh
Q 000842 1022 KQK--EK-QRIIWAYKILFLDVIFPL-SLEKVIFVDADQVVRADMGELYD 1067 (1258)
Q Consensus 1022 ~~~--~~-~r~~~~y~RLfL~~lfP~-~~drVLYLD~D~Iv~~Dl~eL~~ 1067 (1258)
+.. .. ...++..++.-|..+|.. .+++||.|.-|+.+--|.-+-|+
T Consensus 164 ~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 164 PKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 111 11 112345556667777743 48999999999999888877763
No 85
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=22.50 E-value=1.1e+02 Score=33.71 Aligned_cols=52 Identities=15% Similarity=0.346 Sum_probs=40.0
Q ss_pred HHHHHHcCCCCeEEEEEe-CCCChhHHHHH-------HHHHhhcCcEEEEEEecCCccccc
Q 000842 970 ILSVLKNTCRPVKFWFIK-NYLSPQFKDVI-------PHMAQEYGFEYELITYKWPTWLHK 1022 (1258)
Q Consensus 970 i~Sil~n~~~~v~f~il~-~~ls~~~~~~l-------~~l~~~~~~~i~~v~~~wp~~l~~ 1022 (1258)
+-||-.+.++++.+||.+ ..++++.++.| .++++.+|++++|+-++ +..|+.
T Consensus 106 ~gSi~Qs~~SDlDiWvCh~~~L~~~~~~~Lq~K~~~i~~WA~~~gvEv~FfLmd-~~~fr~ 165 (204)
T PF12633_consen 106 TGSIGQSSSSDLDIWVCHDSDLSPEERQLLQQKCDLIEQWAASFGVEVHFFLMD-EERFRH 165 (204)
T ss_pred CccccCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEEEEC-HHHHhc
Confidence 446666667899999988 67888877654 44568899999999998 666654
No 86
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.05 E-value=3.3e+02 Score=29.10 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=33.7
Q ss_pred CChhhhhhhhccchhhHHHHHHHHHHHHhCCCccCceeEEcceec
Q 000842 276 PPQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVS 320 (1258)
Q Consensus 276 ~~~~~~~~l~~~~~~d~~~~~~~~f~~rlgi~~~~p~vlvNG~~~ 320 (1258)
.+.+.+...+.++.+...+++..+-..++|+.+ .|+++|||...
T Consensus 143 ld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G-~Pt~vv~g~~~ 186 (201)
T cd03024 143 LDAAEARAVLASDEYADEVRADEARARQLGISG-VPFFVFNGKYA 186 (201)
T ss_pred CCHHHHHHHhcCcccchHHHHHHHHHHHCCCCc-CCEEEECCeEe
Confidence 444567777777788778888777788899965 69999998743
No 87
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.89 E-value=4.1e+02 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHhhc
Q 000842 960 HLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEY 1005 (1258)
Q Consensus 960 ~~Y~~~~~v~i~Sil~n~~~~v~f~il~~~ls~~~~~~l~~l~~~~ 1005 (1258)
.|.+..+..++.|++..+-.++.+.|++++-++...+.+..+....
T Consensus 12 ~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~ 57 (291)
T COG0463 12 YNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKD 57 (291)
T ss_pred cchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhc
Confidence 4667899999999998877566777777887877787777776543
No 88
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=21.77 E-value=5.7e+02 Score=28.06 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHhhcCcEEEEEEecCCccccccccccc-HHHHHHHHh
Q 000842 961 LYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILF 1037 (1258)
Q Consensus 961 ~Y~~~~~v~i~Sil~n~~--~~v~f~il~~~ls~~~~~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r-~~~~y~RLf 1037 (1258)
|.+..+.-++.|++..+- ..+.+.|++++-++...+.+.++.......+.. +. +. ....+.+ ...++..
T Consensus 11 Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~--~~-~~---~~~G~~~a~n~g~~~-- 82 (241)
T cd06427 11 KEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVV--VP-PS---QPRTKPKACNYALAF-- 82 (241)
T ss_pred CcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEE--ec-CC---CCCchHHHHHHHHHh--
Confidence 446778899999987443 247788888877777777776654322223222 21 11 0011111 1122221
Q ss_pred hcccCCCCCCeEEEEeCceeecC-CchHHHh
Q 000842 1038 LDVIFPLSLEKVIFVDADQVVRA-DMGELYD 1067 (1258)
Q Consensus 1038 L~~lfP~~~drVLYLD~D~Iv~~-Dl~eL~~ 1067 (1258)
..-|=|+++|+|.++.- .+.++..
T Consensus 83 ------a~gd~i~~~DaD~~~~~~~l~~~~~ 107 (241)
T cd06427 83 ------ARGEYVVIYDAEDAPDPDQLKKAVA 107 (241)
T ss_pred ------cCCCEEEEEcCCCCCChHHHHHHHH
Confidence 24688999999987653 4555554
No 89
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=21.01 E-value=1.3e+02 Score=36.06 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=36.6
Q ss_pred EEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000842 793 VLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 846 (1258)
Q Consensus 793 lieG~~~d~~~~~p~GlqL~L~~~~~~~~~dTivManlGYfQlka~PG~w~l~l 846 (1258)
-|.|+..|..+.|..|..+.+.... .-|++ ..-|+|.+...||.|.|++
T Consensus 299 ~i~G~V~d~~g~pl~~A~V~i~~~~----~~~~T-d~~G~f~~~l~~G~y~l~v 347 (374)
T cd03858 299 GIKGFVRDANGNPIANATISVEGIN----HDVTT-AEDGDYWRLLLPGTYNVTA 347 (374)
T ss_pred ceEEEEECCCCCccCCeEEEEecce----eeeEE-CCCceEEEecCCEeEEEEE
Confidence 4689999986689999999994221 12222 3339999999999999987
No 90
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=20.78 E-value=5.6e+02 Score=31.24 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=65.3
Q ss_pred CCCCCCeEEEEeCceeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCccccccchhhccC-CC--CCceecceeeeehH
Q 000842 1042 FPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL-RG--RPYHISALYVVDLK 1118 (1258)
Q Consensus 1042 fP~~~drVLYLD~D~Iv~~Dl~eL~~~dl~~~~~aav~d~~~~~~~~g~~~w~~gyw~~~l-~~--~~YfNSGv~liNL~ 1118 (1258)
+| +++-+-|||+|.+|..--.+ +.++.+ .+-+ .--.|| ...+ .. -.-.|+|+|+|=.-
T Consensus 195 ~P-eaEWiWWLDsDALImNmsfe---lPlery-----~~~N---------lVihg~-~~~l~~~kdW~GLNtGsFLIRNc 255 (429)
T PLN03182 195 HP-EVEWIWWMDSDALFTDMTFE---IPLEKY-----EGYN---------LVIHGW-DELVYDQKSWIGLNTGSFLIRNC 255 (429)
T ss_pred CC-CceEEEEecCCceeecCCCC---CCHhHc-----CCcC---------eeeccc-hhhheeccccCccceeeEEEEcC
Confidence 67 69999999999988642111 122110 0000 000111 2222 22 24689999999665
Q ss_pred HHHhh----------------cHHHHHHHHHHHhccCCCCCCCCCCcHHhHhhcc------CcccccCCccccccCcc--
Q 000842 1119 RFRET----------------AAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHT------VPIFSLPQEWLWCESWC-- 1174 (1258)
Q Consensus 1119 ~~R~~----------------~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~------~~I~~Lp~~wN~~~~~~-- 1174 (1258)
.|=-. .+|+.+...+ +..| .+-.=||..|-+++.. .+++ |-.+|-+..-|-
T Consensus 256 qWSldlLDaWa~mgp~~~~~~~~g~~l~~~l---~~rp-~~eaDDQSAlvyLl~~~~~~w~~kv~-le~~y~l~Gyw~~i 330 (429)
T PLN03182 256 QWSLDLLDAWAPMGPKGPIRDEAGKILTAEL---KGRP-AFEADDQSALVYLLLTQRERWGDKVY-LENSYYLHGYWVGL 330 (429)
T ss_pred HHHHHHHHHHHhcCCCCchhhhHHHHHHHhh---cCCC-CCCcccHHHHHHHHHhcchhhccceE-EeecceeccccHHH
Confidence 55331 2233333332 2333 4556799999888732 2344 555665444332
Q ss_pred -------------CccccCCCeEEEccC
Q 000842 1175 -------------GNATKSKAKTIDLCN 1189 (1258)
Q Consensus 1175 -------------~~~~~~~akii~~~~ 1189 (1258)
+....+.+-+.||++
T Consensus 331 v~~yee~~~~~~~g~gd~rwPfvtHF~G 358 (429)
T PLN03182 331 VDRYEEMMEKYHPGLGDDRWPFVTHFVG 358 (429)
T ss_pred HHHHHHHHHhcCCCCCCcccceeEeecc
Confidence 112345678999964
No 91
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=20.34 E-value=6.6e+02 Score=30.14 Aligned_cols=111 Identities=13% Similarity=0.172 Sum_probs=66.0
Q ss_pred ceeeEEEEecCcchHHHHHHHHHHHHHcCCC-CeEEEEEeCCCChhHHHHHHHHHhhcC--cEEEEEEec-CCccccccc
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYG--FEYELITYK-WPTWLHKQK 1024 (1258)
Q Consensus 949 ~~InIf~va~~~~Y~~~~~v~i~Sil~n~~~-~v~f~il~~~ls~~~~~~l~~l~~~~~--~~i~~v~~~-wp~~l~~~~ 1024 (1258)
..+=|+..+.+ -+..+..++.|++..+-. ++.++|++|+-++...+.++++.+.+. ..++++... -|. ...
T Consensus 40 p~VSVIIpa~N--e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~---g~~ 114 (384)
T TIGR03469 40 PAVVAVVPARN--EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPP---GWS 114 (384)
T ss_pred CCEEEEEecCC--cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCC---CCc
Confidence 34666665554 467788999999875432 578899998888888888888876553 245555432 011 001
Q ss_pred cccc-HHHHHHHHhhcccCCCCCCeEEEEeCceeecC-CchHHHh
Q 000842 1025 EKQR-IIWAYKILFLDVIFPLSLEKVIFVDADQVVRA-DMGELYD 1067 (1258)
Q Consensus 1025 ~~~r-~~~~y~RLfL~~lfP~~~drVLYLD~D~Iv~~-Dl~eL~~ 1067 (1258)
.+.+ ...++.. .....| +-|-++++|+|+++.- -+..+..
T Consensus 115 Gk~~A~n~g~~~--A~~~~~-~gd~llflDaD~~~~p~~l~~lv~ 156 (384)
T TIGR03469 115 GKLWAVSQGIAA--ARTLAP-PADYLLLTDADIAHGPDNLARLVA 156 (384)
T ss_pred chHHHHHHHHHH--HhccCC-CCCEEEEECCCCCCChhHHHHHHH
Confidence 1111 1112211 222232 3789999999998754 4566653
No 92
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=20.14 E-value=1.8e+02 Score=35.07 Aligned_cols=49 Identities=12% Similarity=0.297 Sum_probs=36.8
Q ss_pred EEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000842 793 VLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 846 (1258)
Q Consensus 793 lieG~~~d~~~~~p~GlqL~L~~~~~~~~~dTivManlGYfQlka~PG~w~l~l 846 (1258)
-|.|+..|.++.|..|..+.+..... +++=..-|+|....+||.|.|++
T Consensus 297 ~i~G~V~d~~g~pv~~A~V~v~~~~~-----~~~td~~G~y~~~l~~G~Y~l~v 345 (372)
T cd03868 297 GVKGFVRDASGNPIEDATIMVAGIDH-----NVTTAKFGDYWRLLLPGTYTITA 345 (372)
T ss_pred ceEEEEEcCCCCcCCCcEEEEEeccc-----ceEeCCCceEEecCCCEEEEEEE
Confidence 36899999866999999999975321 12222339998888899999987
Done!