Query 000842
Match_columns 1258
No_of_seqs 271 out of 1238
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 15:52:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000842.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_614-618//hhsearch_pdb/000842hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 1.0 1 1 346.0 16.6 255 949-1218 4-274 (276)
2 1g9r_A Glycosyl transferase; a 1.0 1 1 312.1 12.4 231 951-1199 1-255 (311)
3 1ll2_A Glycogenin-1; protein-s 1.0 1 1 202.1 15.4 229 950-1223 4-265 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 1.0 1 1 188.0 12.7 203 954-1199 8-224 (263)
5 1o7q_A N-acetyllactosaminide a 1.0 1 1 46.9 16.9 225 947-1187 46-278 (289)
6 3ioh_A Histo-blood group ABO s 1.0 1 1 44.3 14.1 225 947-1187 56-288 (298)
7 4ayl_A BOGT-metal-independent 1.0 1 1 35.6 12.9 215 950-1185 2-227 (246)
8 3bci_A Disulfide bond protein 1.0 1 1 28.7 15.1 40 281-321 120-161 (186)
9 3gha_A Disulfide bond formatio 1.0 1 1 28.7 15.6 163 409-594 28-195 (202)
10 3hd5_A Thiol:disulfide interch 1.0 1 1 25.6 14.5 39 411-450 26-65 (195)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=1.00 E-value=1 Score=346.02 Aligned_cols=255 Identities=18% Similarity=0.216 Sum_probs=212.6
Q ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 615699974182228999999999987099-9819999968999569878988876529599999904881001232101
Q 000842 949 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1027 (1258)
Q Consensus 949 ~~inIf~vas~~~Y~~~~~v~i~Sil~n~~-~~v~f~ii~~~ls~~~~~~l~~l~~~~~~~i~~i~~~wp~~l~~~~~~~ 1027 (1258)
.+|||++ ++|++|.++++++|+||++|++ .+++|||+++++++++++.|+.+.+.++++++++.++ +.+++......
T Consensus 4 m~i~I~~-~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 81 (276)
T 3tzt_A 4 MADALLL-TLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-DDLFSFAKVTD 81 (276)
T ss_dssp -CEEEEE-ECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEEEE-EECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEC-HHHHHCCCCCC
T ss_conf 0678999-957868999999999999849987648999828999999999999998759989999828-89971486446
Q ss_pred CHH-HHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCC-CC
Q ss_conf 089-9999996200178899919999276543379367770499997389951047788778842112100100179-99
Q 000842 1028 RII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR-GR 1105 (1258)
Q Consensus 1028 r~~-~~y~rLfl~~llP~~~dkVLYLD~D~Iv~~Dl~eL~~~dl~g~~iaav~d~~~~~~~~g~~~w~~gyw~~~l~-~~ 1105 (1258)
|.. ++|.||++|.+||++++||||||+|++|++||.|||++|++|+++|||+||... .|...+++..++ ..
T Consensus 82 ~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~-------~~~~~~~~~~l~~~~ 154 (276)
T 3tzt_A 82 RYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKT-------DMANNVNRIRLGTDT 154 (276)
T ss_dssp --CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCHHHHHHCCCCCCEEEEEEECCCC-------HHHHHHHHHCCCCCC
T ss_conf 5489999999999970011684999918856417989996258899869999823441-------177888874379888
Q ss_pred CCEECCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCC-CCCCCCCCCC---------
Q ss_conf 802123110425999864189999999998506999987999747758604486211299-3323567667---------
Q 000842 1106 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQ-EWLWCESWCG--------- 1175 (1258)
Q Consensus 1106 ~YfNSGvlliNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~-~wN~~~~~~~--------- 1175 (1258)
+||||||||+||++||+.+++++++++++ .++.++.++|||+||.+|.+ +|+.||+ +||++..+..
T Consensus 155 ~yfNsGV~linl~~~R~~~~~~~~~~~~~---~~~~~~~~~DQd~LN~~f~~-~~~~Lp~~~wN~~~~~~~~~~~~~~~~ 230 (276)
T 3tzt_A 155 DYYNSGLLLINLKRAREEIDPDEIFSFVE---DNHMNLLLPDQDILNAMYGD-RIYPLDDLIYNYDARNYSSYLIRSKKQ 230 (276)
T ss_dssp -CEEEEEEEEEHHHHHHHCCHHHHHHHHH---HC--------CHHHHHHHGG-GEEEEEHHHHSEETTCHHHHHHHTTTC
T ss_pred CEEEEEEEEEEHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHHHHHHHC-CEEECCCHHEEEECCCCHHHHCCCCCH
T ss_conf 74772079987999986429999999999---66366657884599999858-989988532145323220331066312
Q ss_pred ---CCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf ---5546887289766899999715687620146772214889999
Q 000842 1176 ---NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQF 1218 (1258)
Q Consensus 1176 ---~~~~~~akiI~~~~np~~k~~~l~~a~r~~~~w~~~d~~~~~~ 1218 (1258)
++..+.+++||||+.+ |||.-....++...|+.|-+....+
T Consensus 231 ~~~~~~~~~~~iiHy~g~~--KPW~~~~~~~~~~~w~~Y~~~~~~~ 274 (276)
T 3tzt_A 231 ADLAWLMDHTVVLHFCGRD--KPWKKNHRNKFTSLYKHYMSLTKRY 274 (276)
T ss_dssp CSHHHHHHHCCEEECCSSC--CTTSTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECCCC--CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 2155651497599989999--8968888981599999999999986
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=1.00 E-value=1 Score=312.07 Aligned_cols=231 Identities=17% Similarity=0.200 Sum_probs=189.0
Q ss_pred EEEEEEECCCCHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-CCC
Q ss_conf 56999741822289999999999-8709998199999689995698789888765295999999048810012321-010
Q 000842 951 INIFSIASGHLYERFLKIMILSV-LKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQR 1028 (1258)
Q Consensus 951 inIf~vas~~~Y~~~~~v~i~Si-l~n~~~~v~f~ii~~~ls~~~~~~l~~l~~~~~~~i~~i~~~wp~~l~~~~~-~~r 1028 (1258)
|||+++ +|++|.+++.+||.|| ++|++.+++|||+++++|++.++.|+.+...++.+++++.++ +..+..... ..+
T Consensus 1 m~I~~~-~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 78 (311)
T 1g9r_A 1 MDIVFA-ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN-PEDFAGFPLNIRH 78 (311)
T ss_dssp CEEEEE-ECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECC-GGGGTTSCCCCTT
T ss_pred CEEEEE-CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-HHHHHCCCCCCCC
T ss_conf 949998-77868999999999899976998835999989999999999999998759989999848-8997138654242
Q ss_pred H-HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCC---C
Q ss_conf 8-99999996200178899919999276543379367770499997389951047788778842112100100179---9
Q 000842 1029 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR---G 1104 (1258)
Q Consensus 1029 ~-~~~y~rLfl~~llP~~~dkVLYLD~D~Iv~~Dl~eL~~~dl~g~~iaav~d~~~~~~~~g~~~w~~gyw~~~l~---~ 1104 (1258)
. .++|.||+++.+|| +++||||||+|+||++||+|||++|++|+++|||+||.... ...|++.++ +
T Consensus 79 ~s~~~y~Rl~l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~---------~~~~~~~~~~~~~ 148 (311)
T 1g9r_A 79 ISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER---------QEGYKQKIGMADG 148 (311)
T ss_dssp CCGGGGGGGGHHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT---------STTHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHHH-HCCEEEEECCCEEECCCHHHHHCCCCCCCEEEEEECCCHHH---------HHHHHHHCCCCCC
T ss_conf 7899999999999854-14879998178676267799945287886799984542244---------1999985478889
Q ss_pred CCCEECCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC-------C--
Q ss_conf 9802123110425999864189999999998506999987999747758604486211299332356766-------7--
Q 000842 1105 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC-------G-- 1175 (1258)
Q Consensus 1105 ~~YfNSGvlliNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~-------~-- 1175 (1258)
.+||||||||+|+++||+.++++++++++++ ++.++.++|||+||.+|.+ .|..||.+||++.+.+ .
T Consensus 149 ~~yfNsGv~linl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQd~lN~~f~~-~~~~Lp~~wN~~~~~~~~~~~~~~~~ 224 (311)
T 1g9r_A 149 EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQ---YKDVMQYQDQDILNGLFKG-GVCYANSRFNFMPTNYAFMANWFASR 224 (311)
T ss_dssp SCCEEEEEEEECHHHHTTSCHHHHHHHHHHH---HTTTCSSHHHHHHHHHHTT-SEEEECGGGSBCHHHHHTCC----CS
T ss_pred CCEEEEEEEEEEHHHHHHCCHHHHHHHHHHH---CCCCCCCCCCCHHHHHHCC-CEEECCHHHCCCCCHHHHHHHHCCCC
T ss_conf 8468644434609999860269999999996---6576755872799999809-77982800355741456776401466
Q ss_pred ---------CCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf ---------554688728976689999971568
Q 000842 1176 ---------NATKSKAKTIDLCNNPMTKEPKLQ 1199 (1258)
Q Consensus 1176 ---------~~~~~~akiI~~~~np~~k~~~l~ 1199 (1258)
.+....+++||||+. .|+|.-.
T Consensus 225 ~~~~~~~~~~~~~~~~~iiHy~g~--~KPW~~~ 255 (311)
T 1g9r_A 225 HTDPLYRDRTNTVMPVAVSHYCGP--AKPWHRD 255 (311)
T ss_dssp CCCHHHHHHHSCCSSCSEEECCSS--CCTTSSS
T ss_pred CCHHHHHHHHHCCCCCEEEEECCC--CCCCCCC
T ss_conf 513566677613699889975996--9899788
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=1.00 E-value=1 Score=202.10 Aligned_cols=229 Identities=14% Similarity=0.119 Sum_probs=159.2
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEE-EEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCC--C
Q ss_conf 15699974182228999999999987099981999-996899956987898887652959999990488100-1232--1
Q 000842 950 TINIFSIASGHLYERFLKIMILSVLKNTCRPVKFW-FIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWL-HKQK--E 1025 (1258)
Q Consensus 950 ~inIf~vas~~~Y~~~~~v~i~Sil~n~~~~v~f~-ii~~~ls~~~~~~l~~l~~~~~~~i~~i~~~wp~~l-~~~~--~ 1025 (1258)
.++|+. ++|.+|...+.+++.||.+|++ ...++ +++++++++.++.|..+ +..+..+.+- +... .... .
T Consensus 4 ~a~vt~-~~d~~Yl~~a~vl~~SL~~~~s-~~~l~vlv~~~is~~~~~~L~~~----~~~v~~v~~l-~~~~~~~~~~~~ 76 (333)
T 1ll2_A 4 QAFVTL-TTNDAYAKGALVLGSSLKQHRT-SRRLAVLTTPQVSDTMRKALEIV----FDEVITVDIL-DSGDSAHLTLMK 76 (333)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHTTC-CSEEEEEECTTSCHHHHHHHHHH----CSEEEECCTT-STTSTTHHHHHH
T ss_pred EEEEEE-EECHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHH----CCEEEEEEEC-CCCCHHHCCCCC
T ss_conf 499999-8488799999999999998589-99889998499999999899985----9989998636-873221102024
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 01089999999620017889991999927654337936777049999738995104778877884211210010017999
Q 000842 1026 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGR 1105 (1258)
Q Consensus 1026 ~~r~~~~y~rLfl~~llP~~~dkVLYLD~D~Iv~~Dl~eL~~~dl~g~~iaav~d~~~~~~~~g~~~w~~gyw~~~l~~~ 1105 (1258)
..+...+|.||+++.+ + +++||||||+|++|.+||++||+++ .+||++++ | | .
T Consensus 77 ~~~~~~t~~Kl~i~~l-~-~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~-------~---~-----------~ 129 (333)
T 1ll2_A 77 RPELGVTLTKLHCWSL-T-QYSKCVFMDADTLVLANIDDLFERE----ELSAAPDP-------G---W-----------P 129 (333)
T ss_dssp CGGGHHHHHHGGGGGC-T-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECS-------S---S-----------T
T ss_pred CCCHHHHHHHHHHHHH-C-CCCEEEEEECCEEECCCHHHHHCCC----CEEEEECC-------C---C-----------C
T ss_conf 6416888899998675-2-7774999838987654999984887----61587457-------8---8-----------7
Q ss_pred CCEECCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCC-----CCCCCCCCCCCCC--CC---
Q ss_conf 8021231104259998641899999999985069999879997477586044862-----1129933235676--67---
Q 000842 1106 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPI-----FSLPQEWLWCESW--CG--- 1175 (1258)
Q Consensus 1106 ~YfNSGvlliNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I-----~~Lp~~wN~~~~~--~~--- 1175 (1258)
.||||||||+|+.. ...+++++++.+ ..++.++|||+||.+|.+ .+ ..||.+||++... ..
T Consensus 130 ~~fNsGvmlin~~~----~~~~~l~~~~~~----~~~~~~~DQ~~LN~~f~~-~~~~~~~~~Lp~~yN~~~~~~~~~~p~ 200 (333)
T 1ll2_A 130 DCFNSGVFVYQPSV----ETYNQLLHVASE----QGSFDGGDQGLLNTFFNS-WATTDIRKHLPFIYNLSSISIYSYLPA 200 (333)
T ss_dssp TSEEEEEEEECCCH----HHHHHHHHHHHH----TCCTTSSHHHHHHHHTTT-TTTSCGGGBCCGGGSEETTHHHHTHHH
T ss_pred CCEEEEEEEEECCH----HHHHHHHHHHHH----CCCCCCCCHHHHHHHHHH-HCCCCCCCCCCCHHHCCCCCCHHCCHH
T ss_conf 65112599996887----899999999986----499778778999999975-023575615873775466521001477
Q ss_pred -CCCCCCCEEEECCCCCCCCCHHHHHH-----------------HHCCCCCC-HHHHHHHHHHHHHC
Q ss_conf -55468872897668999997156876-----------------20146772-21488999999850
Q 000842 1176 -NATKSKAKTIDLCNNPMTKEPKLQGA-----------------RRIVSEWP-DLDSEARQFTAKIL 1223 (1258)
Q Consensus 1176 -~~~~~~akiI~~~~np~~k~~~l~~a-----------------~r~~~~w~-~~d~~~~~~~~~~~ 1223 (1258)
......+++|||++. .|+|..... ..++..|| .|+..+..+..+..
T Consensus 201 ~~~~~~~~~IiHf~g~--~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~~~~~~~~~~ 265 (333)
T 1ll2_A 201 FKAFGANAKVVHFLGQ--TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFG 265 (333)
T ss_dssp HHHHGGGCSEEECCSS--CCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHHHTC--
T ss_pred HHHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 7853389789998999--9988788788765424544454310789999999999762361100331
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=1.00 E-value=1 Score=187.98 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=146.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHHHHHHHHHHHCCCEEEEEEE-CCCC--CCCCCCCCCCH
Q ss_conf 997418222899999999998709998199999-6899956987898887652959999990-4881--00123210108
Q 000842 954 FSIASGHLYERFLKIMILSVLKNTCRPVKFWFI-KNYLSPQFKDVIPHMAQEYGFEYELITY-KWPT--WLHKQKEKQRI 1029 (1258)
Q Consensus 954 f~vas~~~Y~~~~~v~i~Sil~n~~~~v~f~ii-~~~ls~~~~~~l~~l~~~~~~~i~~i~~-~wp~--~l~~~~~~~r~ 1029 (1258)
++.++|++|...+.+++.|+.+|++ ...+.++ +++++++.++.|+.+ +..+..+.. +.+. .+.. ....+.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s-~~~lvvLvt~~vs~~~~~~L~~~----~~~vi~V~~l~~~~~~~~~~-~~rp~~ 81 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRT-TRRLVVLATPQVSDSMRKVLETV----FDEVIMVDVLDSGDSAHLTL-MKRPEL 81 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTC-CSEEEEEECTTSCHHHHHHHHHH----SSEEEECCCCCCCCHHHHHH-TTCTTG
T ss_pred EEEEECHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHC----CCEEEEEEECCCCCHHHHHH-HCCCCH
T ss_conf 9999788899999999999998699-98789996278999999999973----99589965358734555653-037516
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
Q ss_conf 99999996200178899919999276543379367770499997389951047788778842112100100179998021
Q 000842 1030 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHI 1109 (1258)
Q Consensus 1030 ~~~y~rLfl~~llP~~~dkVLYLD~D~Iv~~Dl~eL~~~dl~g~~iaav~d~~~~~~~~g~~~w~~gyw~~~l~~~~YfN 1109 (1258)
..+|.||++..+. +++||||||+|++|.+||++||+++ .+||++|. | | ..|||
T Consensus 82 ~~~~~kl~~~~l~--~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~-------~--------~------~~~fN 134 (263)
T 3u2u_A 82 GVTLTKLHCWSLT--QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDP-------G--------W------PDCFN 134 (263)
T ss_dssp GGGGGGGGGGGCT--TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECT-------T--------S------TTSEE
T ss_pred HHHHHHHHHCCCC--CCCEEEEECCCEEECCCHHHHHCCC----CCEEECCC-------C--------C------CCCCC
T ss_conf 6775998864024--7652899808985135979885787----51470357-------8--------8------76556
Q ss_pred CCEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC----CCCCCCCCCCCCCC--CC-CC---CCC
Q ss_conf 2311042599986418999999999850699998799974775860448----62112993323567--66-75---546
Q 000842 1110 SALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTV----PIFSLPQEWLWCES--WC-GN---ATK 1179 (1258)
Q Consensus 1110 SGvlliNL~~~R~~~~~~~l~~~~~~ls~~~~sl~~~DQDllN~~~~~~----~I~~Lp~~wN~~~~--~~-~~---~~~ 1179 (1258)
|||||+|++ ....+++++.+.+ ..++.++|||+||.+|.+. .++.||.+||++.+ +. .+ +..
T Consensus 135 sGv~li~p~----~~~~~~l~~~~~~----~~~~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~ 206 (263)
T 3u2u_A 135 SGVFVYQPS----VETYNQLLHLASE----QGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFG 206 (263)
T ss_dssp EEEEEECCC----HHHHHHHHHHHHH----HCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHG
T ss_pred CEEEEECCC----HHHHHHHHHHHHH----CCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHCCCCHHHHHHC
T ss_conf 747997336----7899999999984----28988655789999860434467267689310551323104657778426
Q ss_pred CCCEEEECCCCCCCCCHHHH
Q ss_conf 88728976689999971568
Q 000842 1180 SKAKTIDLCNNPMTKEPKLQ 1199 (1258)
Q Consensus 1180 ~~akiI~~~~np~~k~~~l~ 1199 (1258)
..+++||||+. .|+|+..
T Consensus 207 ~~~~IIHf~g~--~KPW~~~ 224 (263)
T 3u2u_A 207 ASAKVVHFLGR--VKPWNYT 224 (263)
T ss_dssp GGCSEEECCSS--SCGGGSE
T ss_pred CCEEEEEECCC--CCCCCCC
T ss_conf 98499988988--9698888
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=1.00 E-value=1 Score=46.93 Aligned_cols=225 Identities=16% Similarity=0.105 Sum_probs=128.8
Q ss_pred CCCEEEEEEEECCCCHH-HHHHHHHHHHHHC--CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 68615699974182228-9999999999870--99981999996899956987898887652959999990488100123
Q 000842 947 HGKTINIFSIASGHLYE-RFLKIMILSVLKN--TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ 1023 (1258)
Q Consensus 947 ~~~~inIf~vas~~~Y~-~~~~v~i~Sil~n--~~~~v~f~ii~~~ls~~~~~~l~~l~~~~~~~i~~i~~~wp~~l~~~ 1023 (1258)
.+-+|-|.++|.| .|. .++.--+.|.=+| ...++++||+++.-+ .++.+.-..+-++..+.+. ..-+-+
T Consensus 46 ~n~tIGl~vfa~G-kY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~-----~~p~v~l~~~r~~~V~~i~--~~~~W~ 117 (289)
T 1o7q_A 46 QKITVGLTVFAVG-RYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVS-----RMPLIELGPLRSFKVFKIK--PEKRWQ 117 (289)
T ss_dssp HTCCEEEEEEECT-THHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGG-----GCCCCCCCTTEEEEEEECC--CCSSHH
T ss_pred HCCEEEEEEEEEC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHH-----HCCCCCCCCCCEEEEEEEC--CCCCCC
T ss_conf 0986999999963-0089999999999998635897579999857822-----1775446899757999960--004884
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCC-
Q ss_conf 2101089999999620017889991999927654337936777049999738995104778877884211210010017-
Q 000842 1024 KEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1102 (1258)
Q Consensus 1024 ~~~~r~~~~y~rLfl~~llP~~~dkVLYLD~D~Iv~~Dl~eL~~~dl~g~~iaav~d~~~~~~~~g~~~w~~gyw~~~l- 1102 (1258)
-..-+.+.+........++- ++|-+.++|+|+++.+++..= .| |..+|...-..-.+....+.|-+..--..++
T Consensus 118 d~sm~Rm~~i~~~~~~~~~~-evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYERrp~S~AyIp 192 (289)
T 1o7q_A 118 DISMMRMKTIGEHIVAHIQH-EVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYERRKESAAYIP 192 (289)
T ss_dssp HHHHHHHHHHHHHHHHTHHH-HCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCCCCTTSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCEEEEEECCCEEECCCCHH---HH-HHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf 65889999999999987740-288799962785752367887---88-77888038787678977798988967600115
Q ss_pred --CCCCCEECCEEEEEHHHHHHHCHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHH-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --99980212311042599986418999999999-850699998799974775860-44862112993323567667554
Q 000842 1103 --RGRPYHISALYVVDLKRFRETAAGDNLRVFYE-TLSKDPNSLANLDQDLPNYAQ-HTVPIFSLPQEWLWCESWCGNAT 1178 (1258)
Q Consensus 1103 --~~~~YfNSGvlliNL~~~R~~~~~~~l~~~~~-~ls~~~~sl~~~DQDllN~~~-~~~~I~~Lp~~wN~~~~~~~~~~ 1178 (1258)
.|.+|+-+|++==-..+.-+. .+.|...+. .+.++... .+.|..-||..+ ...|.+.|+++|+|.+.+..+..
T Consensus 193 ~~eGdfYY~Ga~fGGt~~~vl~l--~~~c~~~i~~D~~n~I~A-~wHDESHLNKYf~~~KPtKvLSPEY~wd~~~~~p~~ 269 (289)
T 1o7q_A 193 FGEGDFYYHAAIFGGTPTQVLNI--TQECFKGILKDKKNDIEA-QWHDESHLNKYFLLNKPTKILSPEYCWDYHIGLPAD 269 (289)
T ss_dssp TTCCSCCEEEEEEEECHHHHHHH--HHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHHHSCCSEEECGGGSBCGGGCCCTT
T ss_pred CCCCCEEEECEEECCCHHHHHHH--HHHHHHHHHHHHHCCEEE-EECCHHHHHHHHHHCCCCEEECHHHCCCCCCCCCCC
T ss_conf 89988788764608738999999--999999999998579078-842365666777646998787877778744589855
Q ss_pred CCCCEEEEC
Q ss_conf 688728976
Q 000842 1179 KSKAKTIDL 1187 (1258)
Q Consensus 1179 ~~~akiI~~ 1187 (1258)
.+..++++.
T Consensus 270 ik~~r~~~~ 278 (289)
T 1o7q_A 270 IKLVKMSWQ 278 (289)
T ss_dssp CCSCSEEEC
T ss_pred CCEEEEEEE
T ss_conf 517899873
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=1.00 E-value=1 Score=44.27 Aligned_cols=225 Identities=14% Similarity=0.148 Sum_probs=123.7
Q ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHCC--CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 6861569997418222899999999998709--99819999968999569878988876529599999904881001232
Q 000842 947 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 1024 (1258)
Q Consensus 947 ~~~~inIf~vas~~~Y~~~~~v~i~Sil~n~--~~~v~f~ii~~~ls~~~~~~l~~l~~~~~~~i~~i~~~wp~~l~~~~ 1024 (1258)
.+-+|-+.++|.| .|..++.--+.|.=+|- ..++++||+++..+ .++.+.-..+-.+..+.+. ...+-|-
T Consensus 56 ~n~tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~-----~vP~v~l~~~r~~~V~~v~--~~~~Wqd 127 (298)
T 3ioh_A 56 QNTTIGLTVFAIK-KYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPA-----AVPRVTLGTGRQLSVLEVR--AYKRWQD 127 (298)
T ss_dssp TTCEEEEEEEECG-GGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGG-----GSCCCCCCTTEEEEEEECC--CCSSHHH
T ss_pred HCCCEEEEEEEEC-CHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHH-----HCCCCCCCCCCEEEEEEEC--CCCCCCC
T ss_conf 1982999999957-289999999871997506796589999717844-----2776556999759999966--6567866
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCC--
Q ss_conf 101089999999620017889991999927654337936777049999738995104778877884211210010017--
Q 000842 1025 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL-- 1102 (1258)
Q Consensus 1025 ~~~r~~~~y~rLfl~~llP~~~dkVLYLD~D~Iv~~Dl~eL~~~dl~g~~iaav~d~~~~~~~~g~~~w~~gyw~~~l-- 1102 (1258)
.+-+.+.+...+....++ .++|-+.++|+|+++.+++..=. | |..+|...-..-.+....|.|-+..--..++
T Consensus 128 ~sm~Rm~~i~~~~~~~~~-~EvDyLfc~dvd~~F~~~vG~E~---L-g~lva~lHp~~y~~~~~~FpYERrp~S~AyIp~ 202 (298)
T 3ioh_A 128 VSMRRMEMISDFCERRFL-SEVDYLVCVDVDMEFRDHVGVEI---L-TPLFGTLHPGFYGSSREAFTYERRPQSQAYIPK 202 (298)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHCSEEEEEESSEEECSCBCGGG---C-SSEEEEBCTTTTTSCGGGSCCCCCTTSTTCCCT
T ss_pred CCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCEECCCCCHHH---H-HHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 649999999999998876-00887999548975305764778---6-756764281343688110865578145414069
Q ss_pred -CCCCCEECCEEEEEHHHHHHHCHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf -9998021231104259998641899999999-98506999987999747758604-486211299332356766-7554
Q 000842 1103 -RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCESWC-GNAT 1178 (1258)
Q Consensus 1103 -~~~~YfNSGvlliNL~~~R~~~~~~~l~~~~-~~ls~~~~sl~~~DQDllN~~~~-~~~I~~Lp~~wN~~~~~~-~~~~ 1178 (1258)
.|.+|+-+|++==-..+..+. .+.|...+ +.+.++...+ +.|..-||..+. +.|.+.|+++|+|...+. ....
T Consensus 203 ~eGdfYY~ga~fGGt~~~vl~L--t~~C~~~i~~D~~n~IeA~-WhDESHLNKYfl~hKPtKvLSPEY~Wd~~~~~~~~~ 279 (298)
T 3ioh_A 203 DEGDFYYGGAFFGGSVQEVQRL--TRACHQAMMVDQANGIEAV-WHDESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPAV 279 (298)
T ss_dssp TCCSCCBCTTEEEEEHHHHHHH--HHHHHHHHHHHHHTTCCCT-TTHHHHHHHHHHHSCCSEEECGGGSBCHHHHCCCTT
T ss_pred CCCCEEEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCEEE-CCCHHHHHHHHHHCCCCCEECHHHCCCCCCCCCCCC
T ss_conf 9998588644408759999999--9999999999986792672-555536566664468980059877489322489760
Q ss_pred CCCCEEEEC
Q ss_conf 688728976
Q 000842 1179 KSKAKTIDL 1187 (1258)
Q Consensus 1179 ~~~akiI~~ 1187 (1258)
.+..|+++.
T Consensus 280 i~~~r~~~~ 288 (298)
T 3ioh_A 280 LRKLRFTAV 288 (298)
T ss_dssp CSCCCEEEC
T ss_pred EEEEEEEEC
T ss_conf 058887751
No 7
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=1.00 E-value=1 Score=35.56 Aligned_cols=215 Identities=14% Similarity=0.157 Sum_probs=114.5
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHC--CCCC--EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCCCCC
Q ss_conf 156999741822289999999999870--9998--1999996899956987898887652959999990-4881001232
Q 000842 950 TINIFSIASGHLYERFLKIMILSVLKN--TCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY-KWPTWLHKQK 1024 (1258)
Q Consensus 950 ~inIf~vas~~~Y~~~~~v~i~Sil~n--~~~~--v~f~ii~~~ls~~~~~~l~~l~~~~~~~i~~i~~-~wp~~l~~~~ 1024 (1258)
+|-|.++|.| .|..++.--+.|.=+| ...+ +++||+++..+.- +... ...+.+..-.. .||.
T Consensus 2 tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~v-----p~~~-~~~v~~~~~~~~~Wqd------ 68 (246)
T 4ayl_A 2 RIGILYICTG-KYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKLY-----DEEN-NKHIHRIKQKNLGWPD------ 68 (246)
T ss_dssp EEEEEEECCG-GGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCCT-----TTTT-CTTEEEEECCCCCTTH------
T ss_pred EEEEEEEEEC-CHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHC-----CCCC-CCEEEEEECCCCCCCC------
T ss_conf 5999999947-4899999998859976147970306999970786658-----7677-7538998577678865------
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCC-CCEEEEEECCCCCCCCCCCCCCCCCHHHCCC-
Q ss_conf 10108999999962001788999199992765433793677704999-9738995104778877884211210010017-
Q 000842 1025 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIK-GRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1102 (1258)
Q Consensus 1025 ~~~r~~~~y~rLfl~~llP~~~dkVLYLD~D~Iv~~Dl~eL~~~dl~-g~~iaav~d~~~~~~~~g~~~w~~gyw~~~l- 1102 (1258)
.+-+.+.+.... ...+- .++|-+.++|+|+++.+++..=.=+..+ |..+|...-..-.+....+.|-+..--..++
T Consensus 69 ~sm~Rm~~i~~~-~~~~~-~evDyLf~~dvd~~F~~~vG~E~L~p~~~~~lva~lHp~~y~~~~~~fpYERrp~S~AyIp 146 (246)
T 4ayl_A 69 NTLKRFHIFLRI-KEQLE-RETDYLFFFNANLLFTSPIGKEILPPSDSNGLLGTMHPGFYNKPNSEFTYERRDASTAYIP 146 (246)
T ss_dssp HHHTHHHHHHTT-HHHHH-HHCSEEEEECTTEEECSCBCGGGSCCTTSCCEEEEBCGGGC--------------------
T ss_pred CCHHHHHHHHHH-HHHHH-HHCCEEEEEECCCEEECCCCHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 505999999999-99987-6478799983784251467777726577888799936145478801086667825540406
Q ss_pred --CCCCCEECCEEEEEHHHHHHHCHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --9998021231104259998641899999999-98506999987999747758604-4862112993323567667554
Q 000842 1103 --RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCESWCGNAT 1178 (1258)
Q Consensus 1103 --~~~~YfNSGvlliNL~~~R~~~~~~~l~~~~-~~ls~~~~sl~~~DQDllN~~~~-~~~I~~Lp~~wN~~~~~~~~~~ 1178 (1258)
.|.+|+-+|++==-..+..+. .+.|...+ +.+.++... .+.|..-||..+. ..|-..|+++|+|.+.+..
T Consensus 147 ~~eGdfYY~ga~fGG~~~~vl~L--t~~c~~~i~~D~~n~I~A-~whDESHLNKYfl~~KP~~vLSPEY~wd~~~~~--- 220 (246)
T 4ayl_A 147 EGEGRYYYAGGLSGGCTKAYLKL--CTTICSWVDRDATNHIIP-IWHDESLINKYFLDNPPAITLSPAYLYPEGWLL--- 220 (246)
T ss_dssp ----CCCBCSSEEEEEHHHHHHH--HHHHHHHHHHHHTTCSSC-SCCHHHHHHHHHHHSCCSEEECGGGGEETTCCC---
T ss_pred CCCCCEEEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCEE-ECCCHHHHHHHHHHCCCCEEECHHHCCCCCCCC---
T ss_conf 99998688654529759999999--999999899998689257-355565767788767898103887727865689---
Q ss_pred CCCCEEE
Q ss_conf 6887289
Q 000842 1179 KSKAKTI 1185 (1258)
Q Consensus 1179 ~~~akiI 1185 (1258)
...+|+|
T Consensus 221 p~~~kii 227 (246)
T 4ayl_A 221 PFEPIIL 227 (246)
T ss_dssp SSCCSEE
T ss_pred CCCCEEE
T ss_conf 8764899
No 8
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=1.00 E-value=1 Score=28.66 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=19.1
Q ss_pred HHHHH--CCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCEECC
Q ss_conf 65310--230025788989989999288866750577150115
Q 000842 281 LLKLE--KEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSE 321 (1258)
Q Consensus 281 l~~l~--~~~~~d~~~~~~~~f~~rlgi~~~~p~vlvNG~~~~ 321 (1258)
+...+ .+..+...+....+...++|+.+ .|.+++||..+.
T Consensus 120 ~~~~~~~~~~~~~~~v~~~~~~a~~~gv~G-tPt~vvnG~~~~ 161 (186)
T 3bci_A 120 IIKDYKTKDSKSWKAAEKDKKIAKDNHIKT-TPTAFINGEKVE 161 (186)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHTTCCS-SSEEEETTEECS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CCEEEECCEECC
T ss_conf 999987237889999999999999769988-996989999857
No 9
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=1.00 E-value=1 Score=28.65 Aligned_cols=163 Identities=10% Similarity=0.061 Sum_probs=82.6
Q ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHHHCC---CCCEEEEEEECCCCCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8632899994289986899999999998639---996199999769978898215-898989986410210456999999
Q 000842 409 VKPVTHLLAVDVTSKKGMKLLHEGIRFLIGG---SNGARLGVLFSASREADLPSI-IFVKAFEITASTYSHKKKVLEFLD 484 (1258)
Q Consensus 409 ~~~~t~~lv~Df~s~~g~~~l~~al~~l~~~---~~~~Ri~~i~~~~~~~~~~~~-~l~~~i~aa~~~~~~~~~l~~~l~ 484 (1258)
..++|.....||.++...++-......+++. ...+|+.+.+-|-.. .+. .-..+..++... . .++.-.+..
T Consensus 28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~---~~s~~Aa~aa~a~~~~-~-~~~f~~~~~ 102 (202)
T 3gha_A 28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHG---KGSRLAALASEEVWKE-D-PDSFWDFHE 102 (202)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSH---HHHHHHHHHHHHHHHH-C-GGGHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC---HHHHHHHHHHHHHHHH-C-HHHHHHHHH
T ss_conf 9998999987999860898998755999998243884999998467662---5389999999998741-8-889999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 9854433334310232233038889999877762-299947774105754302567877789999998828999881799
Q 000842 485 QLCSFYERTYLLASSATADSTQAFIDKVCEFAEA-NGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVI 563 (1258)
Q Consensus 485 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~g~~~ii 563 (1258)
.|....... ...+.+ .+.+.+.++. .+++.+.+...+.+........ +. .-..+.+|+. |.+.++
T Consensus 103 aLf~~~~~~--------~~~~~~-~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~---~~-~~~a~~~gV~-gtPtfv 168 (202)
T 3gha_A 103 KLFEKQPDT--------EQEWVT-PGLLGDLAKSTTKIKPETLKENLDKETFASQVE---KD-SDLNQKMNIQ-ATPTIY 168 (202)
T ss_dssp HHHHHCCSS--------SSCCCC-HHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHH---HH-HHHHHHTTCC-SSCEEE
T ss_pred HHHHHCCCC--------CCCCCC-HHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHH---HH-HHHHHHCCCC-CCCEEE
T ss_conf 999838232--------444358-899999998816999999999995948999999---99-9999986998-278798
Q ss_pred ECCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7377744999999897559999999998425
Q 000842 564 TNGRVTFPIDESTFLSHDLSLLESVEFKHRI 594 (1258)
Q Consensus 564 ~NGR~i~~~~~~~f~~~Df~~l~~~e~~~~~ 594 (1258)
+||+++. ...+.++|..++.-...+.+
T Consensus 169 vnG~~~~----G~~~~e~l~~~i~~~~~~~~ 195 (202)
T 3gha_A 169 VNDKVIK----NFADYDEIKETIEKELKGKL 195 (202)
T ss_dssp ETTEECS----CTTCHHHHHHHHHHHHHHC-
T ss_pred ECCEEEC----CCCCHHHHHHHHHHHHHHHH
T ss_conf 9999816----98999999999999987565
No 10
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=1.00 E-value=1 Score=25.61 Aligned_cols=39 Identities=8% Similarity=-0.132 Sum_probs=17.4
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHCCCC-CEEEEEEEC
Q ss_conf 3289999428998689999999999863999-619999976
Q 000842 411 PVTHLLAVDVTSKKGMKLLHEGIRFLIGGSN-GARLGVLFS 450 (1258)
Q Consensus 411 ~~t~~lv~Df~s~~g~~~l~~al~~l~~~~~-~~Ri~~i~~ 450 (1258)
+++...+.|+.++....... .++.+.+... ++++..++.
T Consensus 26 ~~~vv~f~d~~Cp~C~~~~~-~l~~l~~~~~~~v~~~~~~~ 65 (195)
T 3hd5_A 26 KIEVLEFFAYTCPHCAAIEP-MVEDWAKTAPQDVVLKQVPI 65 (195)
T ss_dssp CEEEEEEECTTCHHHHHHHH-HHHHHHHTCCTTEEEEEEEC
T ss_pred CEEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCEEEEEEEC
T ss_conf 95999998899814777669-99999997799769999852
Done!