Query 000843
Match_columns 1258
No_of_seqs 118 out of 163
Neff 2.2
Searched_HMMs 46136
Date Tue Apr 2 00:18:50 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1049 Polyadenylation factor 100.0 1.6E-44 3.5E-49 402.1 25.5 500 136-800 24-536 (538)
2 PF05182 Fip1: Fip1 motif; In 99.9 4.4E-24 9.5E-29 175.7 3.8 45 346-390 1-45 (45)
3 COG5213 FIP1 Polyadenylation f 99.8 1.4E-21 3.1E-26 202.4 3.2 55 342-396 115-169 (266)
4 KOG0921 Dosage compensation co 87.4 2.5 5.4E-05 53.5 9.5 108 186-327 1159-1266(1282)
5 PF04094 DUF390: Protein of un 45.8 1E+02 0.0023 39.0 9.6 14 296-309 129-142 (828)
6 KOG1049 Polyadenylation factor 28.2 29 0.00062 42.2 1.4 53 730-782 420-478 (538)
7 PF11709 Mit_ribos_Mrp51: Mito 23.2 1.8E+02 0.0039 33.0 6.3 85 293-392 48-162 (312)
8 KOG1924 RhoA GTPase effector D 20.2 2.6E+02 0.0055 36.3 7.1 60 336-398 611-672 (1102)
9 PHA02669 hypothetical protein; 12.5 2.2E+02 0.0047 31.0 3.5 42 142-200 73-114 (210)
10 COG5180 PBP1 Protein interacti 11.8 6.8E+02 0.015 31.1 7.5 70 231-303 531-603 (654)
No 1
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=402.08 Aligned_cols=500 Identities=21% Similarity=0.248 Sum_probs=341.2
Q ss_pred ccCCcccccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 000843 136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE 215 (1258)
Q Consensus 136 ~~~~~~~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~ 215 (1258)
.+.++.++.|+.|.|+.+++|++...-+.|+..- |-+|.+|++.++||++.+.+ ..++.++|.... ..-|.
T Consensus 24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~ 94 (538)
T KOG1049|consen 24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE 94 (538)
T ss_pred ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence 4566778899999999999999999876554211 12555667778888877766 788999998830 00111
Q ss_pred CCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 000843 216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA 295 (1258)
Q Consensus 216 ~gaerk~ggge~~~~~~~~~g~a~~~~kiGys~~g~~~hp~HsqfKYVRPgaa~~pga~~~~~~g~pgqvrp~~~~~~~a 295 (1258)
.+ .++ ...++ ||+.++.+..+++...+...+.+|+
T Consensus 95 ~~--------~~~------~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~---------- 129 (538)
T KOG1049|consen 95 DD--------VAV------DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT---------- 129 (538)
T ss_pred cc--------ccc------ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence 11 110 00000 8999999999999888887777766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 000843 296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE 375 (1258)
Q Consensus 296 GrgrGdWrp~g~k~~~~~~k~fh~g~g~~~~G~~~aGrG~eF~lp~~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE 375 (1258)
.++..++++|. +|+-.+.|.. ...+||+||||.|++||||+|||||||||||||||
T Consensus 130 -------------~~~a~~kg~~~-----~~dld~~g~i------n~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE 185 (538)
T KOG1049|consen 130 -------------NKSAAPKGKMS-----QVDLDTPGTI------NGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE 185 (538)
T ss_pred -------------ccccccccCcc-----cccccCCccc------CCccceeecHHHhccCcccCCCccchhhhccccCH
Confidence 12223565653 3443333333 22389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhcccCC---CCCCCceeeecCCCCCCCCCCCCCCCCccCCC-CceEEEeccCccCC
Q 000843 376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD 451 (1258)
Q Consensus 376 ~TWr~YC~kq~qlR~E~tmqsKI~~yEsg~---~lptGRaIQVEgg~geR~PS~D~RpPR~rDSD-aIIeIv~qdS~Dd~ 451 (1258)
+||++||++|++||.+|++...+.+++..+ .+++.-.||..+- .|.+ .... +-..++|.++.--.
T Consensus 186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g~----~p~~-------~~ts~~~~~~~~~~~~~~~ 254 (538)
T KOG1049|consen 186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPGP----GPVG-------NLTSRTSVGARGIDSNQRP 254 (538)
T ss_pred HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCCC----CCcc-------ccCCccccccccCCCCCCC
Confidence 999999999999999999998888887664 3555555544431 1111 1110 11122222111110
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccccccccccchhhhhccccCcccccccCCCCCCCCC-------CC
Q 000843 452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGL-------LP 524 (1258)
Q Consensus 452 ~s~~n~~q~n~~~r~d~r~~~~~~e~~M~~~~~ey~~gfpq~y~~r~~~~~~~~~P~mNs~~~n~pegd~~-------lp 524 (1258)
.+. +.+.+...-...+.|. ....|+.|+-..++--|++. .|
T Consensus 255 --------~~~-------------------~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~r~g~~~~~~~~~~~p 302 (538)
T KOG1049|consen 255 --------AND-------------------VPPSGGGRPLMSVTGS-----RPAEPSSNSQAPGARSGSGEPSGMSEPPP 302 (538)
T ss_pred --------CCC-------------------CCCCCCCcccccccCC-----cCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence 000 0000100000000100 11233333322233333322 23
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 000843 525 FPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV 603 (1258)
Q Consensus 525 ~~~~~p~~~~~gsrg~~p~~~g~~~gtp~e~r~~~gr~~~~Sp~~tP~Qs~~~krf~Dsq~EEs~ESmdgk~s~~-sSPv 603 (1258)
+-...|.++.-..-|..++ |-.++- .+..+.++++|.|+...+--|..+.|+...|.++..|.. ..|.
T Consensus 303 ~~~a~p~~~~~~~~~~~~s-p~~~~t----------~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g 371 (538)
T KOG1049|consen 303 SMEAGPSQKERLPPGPEES-PPSNET----------APGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG 371 (538)
T ss_pred CcCCCCChhhccCCCcCCC-CCcCCC----------CCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence 3333344444444443333 112222 245577888999988889899999999999999998887 7888
Q ss_pred cccccccccccccccccccccccCCCcchhhcccccccccCcccCCCcccCcccccccccccCCccccCChhHHHHHhhc
Q 000843 604 IVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARS 683 (1258)
Q Consensus 604 ~v~dare~S~E~kD~~d~e~~~adgss~~~~dE~n~~T~~D~~kd~~l~hs~kkqK~~S~veQp~~qe~d~~~dska~rs 683 (1258)
.|+.+.. ++.-.+.....+ .++. + .-..++.+...+...+. ++..-++.+|.
T Consensus 372 ~~~~pp~-~~h~~~~~~~s~--~~~~-------~-----------------~~~~~m~~~~~~~~~~~-r~~~rs~~~r~ 423 (538)
T KOG1049|consen 372 EVRPPPQ-SAHLAAPEGPSP--KRGE-------S-----------------SPDMYMRHRSPHSRSRD-RDNGRSGYRRR 423 (538)
T ss_pred ccCCCcc-ccccccCCCCCC--Cccc-------c-----------------CccccccCCCccccccc-ccccccchhhh
Confidence 8888766 555554311122 1111 1 13346677777888888 77888889999
Q ss_pred ccccccccCCcccchhhccCcccccccccccccCCcCCCCCccchhhhhhhhhhhHHHHhhhhhhc-ccCCCCCCCCCCC
Q 000843 684 SENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDP 762 (1258)
Q Consensus 684 SenSkaRSgSskD~qk~~egeEeV~Qd~~S~r~g~~rrh~de~e~~~rRKdrd~r~emER~r~~~~-gRe~syp~rd~dp 762 (1258)
|+.+++++++.||.|. +|-|+++++|.+.-++++|+..+....+||.+|.-.||||.|..+. +++..-+||-||-
T Consensus 424 ~~~~s~~~~~~rd~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~ 499 (538)
T KOG1049|consen 424 SRSRSPTRDPGRDKKP----GELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDE 499 (538)
T ss_pred hhcccCCCCcccCCCC----CcccccccccChhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhh
Confidence 9999999999999999 9999999999999999999999999999999999999999999998 8899999999999
Q ss_pred CCcccccCCCCCccccccccCCcccccccccCcccccc
Q 000843 763 SLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKN 800 (1258)
Q Consensus 763 ~~~~~~~~~~e~~Dr~keren~d~~Wqrredd~~~rr~ 800 (1258)
..... ..+++.|++.|+++.....|..+....++++.
T Consensus 500 ~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~~~e~~~~ 536 (538)
T KOG1049|consen 500 NEESS-SGRREDHSKSKRSGTHLEEYSSRSSFDESQRN 536 (538)
T ss_pred ccccc-cccchhcchhhhccccchhhccCCCccccccc
Confidence 87766 67889999999999999999999999998875
No 2
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=99.89 E-value=4.4e-24 Score=175.74 Aligned_cols=45 Identities=62% Similarity=1.359 Sum_probs=43.5
Q ss_pred eeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhh
Q 000843 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390 (1258)
Q Consensus 346 fdvDiD~~eeKPWRkPGADISDYFNYGFnE~TWr~YC~kq~qlR~ 390 (1258)
|+||||.+++||||+|||||||||||||||+||++||++|+++|+
T Consensus 1 fd~d~d~~~~KPWr~pGaDisDyFNYGf~E~tW~~Y~~kq~~~R~ 45 (45)
T PF05182_consen 1 FDVDIDSFEEKPWRKPGADISDYFNYGFNEETWREYCKKQRQLRK 45 (45)
T ss_pred CCcChhhhccCCccCCCCChhhhcCCCCCHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999984
No 3
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=99.83 E-value=1.4e-21 Score=202.44 Aligned_cols=55 Identities=40% Similarity=1.003 Sum_probs=51.7
Q ss_pred CCcceeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhhhhcccc
Q 000843 342 HKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQS 396 (1258)
Q Consensus 342 ~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE~TWr~YC~kq~qlR~E~tmqs 396 (1258)
++.||+|||+.|.+||||+|||||||||||||||+||++||.+|++||..|+.+.
T Consensus 115 g~nI~~iD~Esf~dKPWrkPGAdiSDYFNYGFnEfTW~eYc~~Q~~l~~d~~p~~ 169 (266)
T COG5213 115 GQNILDIDIESFKDKPWRKPGADISDYFNYGFNEFTWKEYCHMQEKLQQDYNPRE 169 (266)
T ss_pred CcceeeechhhhccCcccCCCcchhhhhhccchhhHHHHHHHHHHHhhhccCHHH
Confidence 3489999999999999999999999999999999999999999999999988754
No 4
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=87.43 E-value=2.5 Score=53.47 Aligned_cols=108 Identities=24% Similarity=0.258 Sum_probs=52.9
Q ss_pred EecCCCCCccCcchhhcccCCCCCcccCCCCCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCC
Q 000843 186 VADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRP 265 (1258)
Q Consensus 186 vadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~~gaerk~ggge~~~~~~~~~g~a~~~~kiGys~~g~~~hp~HsqfKYVRP 265 (1258)
+-||+.+ +-|+--|||--. -.+++--|.-+-.|||-. =|||+.||+.|++---=-|.|+
T Consensus 1159 ygDGp~P----PKmaryDnG~~~-n~SgyRRGgssysgGGYG----------------ggys~gGygsGGYGgsa~~~~~ 1217 (1282)
T KOG0921|consen 1159 YGDGPGP----PKMARYDNGPSN-NNSGYRRGGSSYSGGGYG----------------GGYSGGGYGSGGYGGSAPSARA 1217 (1282)
T ss_pred ccCCCCC----cccccccCCCcc-CccccccCCCCCCCCCcC----------------CCCCCCCcCCCCCCCCCCCCCC
Confidence 4578888 678999999411 112222221222222111 1577777766654322222222
Q ss_pred CCCCCCCCcccCCCCCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000843 266 GAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASG 327 (1258)
Q Consensus 266 gaa~~pga~~~~~~g~pgqvrp~~~~~~~aGrgrGdWrp~g~k~~~~~~k~fh~g~g~~~~G 327 (1258)
++ -+++++|--| .+.+-|-|-|.||.+..++-. ..-.||.-|+|-.++|
T Consensus 1218 ~~------Gagvg~GyrG-----vsrgGfrnnggGdyrnpgggy--rgsGGfgrgggrgagg 1266 (1282)
T KOG0921|consen 1218 NY------GAGVGNGYRG-----VSRGGFRNNGGGDYRNPGGGY--RGSGGFGRGGGRGAGG 1266 (1282)
T ss_pred Cc------cccccCCCcc-----ccCCccccCCCCCCCCCCCCc--cCCCCcCCCCCCCCCC
Confidence 22 2333344444 335667677888887544322 1235566555544444
No 5
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=45.79 E-value=1e+02 Score=38.99 Aligned_cols=14 Identities=36% Similarity=0.416 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCC
Q 000843 296 GRGRGDWRPAGMKT 309 (1258)
Q Consensus 296 GrgrGdWrp~g~k~ 309 (1258)
++..|-|+++...+
T Consensus 129 R~P~Gh~r~a~Peg 142 (828)
T PF04094_consen 129 RRPEGHKRPAQPEG 142 (828)
T ss_pred CCCCCCCCCCCCcc
Confidence 44556666655444
No 6
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=28.23 E-value=29 Score=42.15 Aligned_cols=53 Identities=28% Similarity=0.489 Sum_probs=35.9
Q ss_pred hhhhhhhhhHHHHhhh------hhhcccCCCCCCCCCCCCCcccccCCCCCcccccccc
Q 000843 730 FRRKDREGRQEMERNR------MVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERE 782 (1258)
Q Consensus 730 ~rRKdrd~r~emER~r------~~~~gRe~syp~rd~dp~~~~~~~~~~e~~Dr~kere 782 (1258)
.+|+.|+...+|++.| ++..|++-+|+.+..-+....-.+.....+|+.+||+
T Consensus 420 ~~r~~~~~s~~~~~~rd~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~ 478 (538)
T KOG1049|consen 420 YRRRSRSRSPTRDPGRDKKPGELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDRERE 478 (538)
T ss_pred hhhhhhcccCCCCcccCCCCCcccccccccChhhhccCCCccccccccccccchhhHHH
Confidence 3444556666665554 5677888888877766555555477778888888876
No 7
>PF11709 Mit_ribos_Mrp51: Mitochondrial ribosomal protein subunit ; InterPro: IPR016712 The function of mitochondrial ribosomal small-subunit protein MRP51 is not entirely clear, but deletion of the MRP51 gene completely blocks mitochondrial gene expression [].
Probab=23.25 E-value=1.8e+02 Score=33.01 Aligned_cols=85 Identities=24% Similarity=0.433 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCcCcccCCcc------------ccccCCCCCcceeecCCC
Q 000843 293 PAAGRGRGDWRPAGMKTAPPMQ--------KGFHPGFGMSASGVNMAGRG------------LEFTLPSHKTIFEVDIDG 352 (1258)
Q Consensus 293 ~~aGrgrGdWrp~g~k~~~~~~--------k~fh~g~g~~~~G~~~aGrG------------~eF~lp~~k~IfdvDiD~ 352 (1258)
+-+.+.|||| |.|...|-. +.+.+-..++.|-.. ++-. +......+.++|+-+.+.
T Consensus 48 p~ss~~RgdW---GLKr~LP~k~~~~~I~vn~lDt~e~~tdfesa-~~~~~~~~rfqElgl~~~~~~~~~~plF~~~~~~ 123 (312)
T PF11709_consen 48 PPSSLARGDW---GLKRPLPSKSTSPYIRVNDLDTIERMTDFESA-SDHVWTRKRFQELGLPPSVPPGRQNPLFESESDN 123 (312)
T ss_pred Chhhhhcccc---ccCCcCCccCCCceEEEeccccccccCcceeC-CchHHHHHHHHhcCCCccCCccccCCcccccccc
Confidence 3445789999 888855422 234444456666531 1111 111113345666655553
Q ss_pred c----------CCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhhhh
Q 000843 353 F----------EEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLET 392 (1258)
Q Consensus 353 ~----------eeKPWRkPGADISDYFNYGFnE~TWr~YC~kq~qlR~E~ 392 (1258)
. ...|| ..|.++..+..|+++++.+|.||
T Consensus 124 ~~~~~~~~~~~~~~p~-----------~~~mt~~ef~~yL~kvr~~R~eF 162 (312)
T PF11709_consen 124 TDSSPPLSSLLNSGPW-----------LAGMTEGEFERYLKKVRPLRPEF 162 (312)
T ss_pred ccccccccchhhcCCc-----------ccCCCHHHHHHHHHHhHHHHHHH
Confidence 2 12333 46999999999999999999998
No 8
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.18 E-value=2.6e+02 Score=36.31 Aligned_cols=60 Identities=18% Similarity=0.368 Sum_probs=30.8
Q ss_pred cccCCCCCcceeecCCCcCCCCCCCC-CCCCcc-cccCCCCHHHHHHHHHHHHHhhhhhccccch
Q 000843 336 EFTLPSHKTIFEVDIDGFEEKPWKYP-GVDITD-FFNFGLNEESWKDYCKQLEQHRLETTMQSKI 398 (1258)
Q Consensus 336 eF~lp~~k~IfdvDiD~~eeKPWRkP-GADISD-YFNYGFnE~TWr~YC~kq~qlR~E~tmqsKI 398 (1258)
-|.|++ |-+|.+++ .+.--+|.+= -.|||+ -|=-+-+|+.+..- ....+|+..|..|-|.
T Consensus 611 P~gLkp-KK~~k~e~-~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~-dlfakL~~~Fatq~k~ 672 (1102)
T KOG1924|consen 611 PFGLKP-KKVYKPEV-PMRRFNWSKIVPRDLSENCFWVKVNEDKLEND-DLFAKLALKFATQPKV 672 (1102)
T ss_pred CCCCCc-cccCCCCC-ccccCCccccCccccCccceeeecchhhccch-HHHHHHHHHhhccccc
Confidence 344443 34566654 3567788762 345553 57777777765321 1112245555544333
No 9
>PHA02669 hypothetical protein; Provisional
Probab=12.55 E-value=2.2e+02 Score=31.02 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=28.3
Q ss_pred cccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchh
Q 000843 142 EDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVE 200 (1258)
Q Consensus 142 ~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~E 200 (1258)
-.-||||+||.=.+----++ ++--|--|..+..++.|++++|
T Consensus 73 ~SRWDSDtEdGdtvSTTSTS-----------------~gGTLtRv~~~~~p~~~~pmYE 114 (210)
T PHA02669 73 CSRWDSDTEDGDTVSTTSTS-----------------GGGTLSRVWVGGGPRFQHPMYE 114 (210)
T ss_pred cccccCcccCCceeeeeecC-----------------CCceEEeeeecCCCccCcchhh
Confidence 35699999976554433332 3446777777888887888865
No 10
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=11.83 E-value=6.8e+02 Score=31.10 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=35.4
Q ss_pred chhhhhhhcccccccccCCCCcCCCCCCcccccCCCCCCCCCCcccCC---CCCCCccCCCccCCCCCCCCCCCCC
Q 000843 231 AAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVA---AGGPGQVRPLVNMGPAAGRGRGDWR 303 (1258)
Q Consensus 231 ~~~~~g~a~~~~kiGys~~g~~~hp~HsqfKYVRPgaa~~pga~~~~~---~g~pgqvrp~~~~~~~aGrgrGdWr 303 (1258)
|.+...+-..+--+| +-.+| -||-.|--+|-|----||..-..|. ||-.-|+-||+.|..++|-++|...
T Consensus 531 PSA~P~P~M~~~~~G-~~~~Y--~P~~PQ~~~~~PSP~~~P~~Gs~Ga~~~G~~~~~~vP~~~M~~~PG~~~GA~~ 603 (654)
T COG5180 531 PSASPNPMMNGFAAG-SMGMY--MPFQPQPMFYHPSPQMMPVMGSNGAEEGGGNISPHVPAGFMAAGPGAPMGAFG 603 (654)
T ss_pred CCCCCCCCcCCcccC-Ccccc--cCCCCCcccccCCCCCCcccCCCCCcccCCcCCCCCCccccccCCCCCCcccc
Confidence 333333333333344 44445 3444455555555433343222222 3334456677777777788888774
Done!