Query 000843
Match_columns 1258
No_of_seqs 117 out of 163
Neff 2.2
Searched_HMMs 13730
Date Tue Mar 26 16:27:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000843.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_614-618//hhsearch_scop/000843hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gk8i_ d.73.1.1 (I:) Ribulose 8.2 37 0.0027 9.5 1.6 18 1208-1225 74-91 (126)
2 d1rcqa2 c.1.6.1 (A:8-233) Alan 4.7 76 0.0055 7.6 1.8 20 256-275 193-212 (226)
3 d1qeza_ b.40.5.1 (A:) Inorgani 3.1 56 0.0041 8.4 -1.8 11 368-378 48-58 (170)
4 d1twla_ b.40.5.1 (A:) Inorgani 3.1 56 0.0041 8.4 -1.8 11 369-379 53-63 (173)
5 d2jxta1 d.355.1.1 (A:1-78) Rib 2.8 1.4E+02 0.01 5.9 0.5 18 812-829 39-56 (78)
6 d2o3bb1 d.221.1.1 (B:1-135) Nu 2.8 1.4E+02 0.01 5.9 0.4 20 340-359 53-77 (135)
7 d1cxya_ d.120.1.1 (A:) Cytochr 2.7 1.5E+02 0.011 5.7 0.4 23 360-382 47-71 (81)
8 d2prda_ b.40.5.1 (A:) Inorgani 2.6 61 0.0044 8.2 -2.1 10 369-378 53-62 (174)
9 d1nkta4 c.37.1.19 (A:397-615) 2.3 1.1E+02 0.0082 6.5 -1.1 23 273-298 73-95 (219)
10 d1bd0a2 c.1.6.1 (A:12-244) Ala 2.2 1.9E+02 0.014 5.1 0.9 33 256-295 200-232 (233)
No 1
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.22 E-value=37 Score=9.53 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCHHHHHH
Q ss_conf 014789999722588630
Q 000843 1208 ERFKLPMPSEKDTLAIKK 1225 (1258)
Q Consensus 1208 ERFKLPMP~EKda~~~KK 1225 (1258)
+-+||||=+++|+-+|.+
T Consensus 74 tMWKLPMFg~tD~~~Vl~ 91 (126)
T d1gk8i_ 74 TMWKLPMFGCRDPMQVLR 91 (126)
T ss_dssp EEESCCCTTCCCHHHHHH
T ss_pred EEECCCCCCCCCHHHHHH
T ss_conf 110766689989899999
No 2
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.70 E-value=76 Score=7.58 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 88866212789999999965
Q 000843 256 YHSQFKYVRPGAAPIPGSAT 275 (1258)
Q Consensus 256 ~HsqfKYVRPgaa~~pga~~ 275 (1258)
...+|-+||||.+.+-..|.
T Consensus 193 ~~~~~d~vR~Gi~lYG~~P~ 212 (226)
T d1rcqa2 193 PKVPSDWVRPGILLYGATPF 212 (226)
T ss_dssp TTSCCSEECCCGGGGTCCSS
T ss_pred CCCCCCEECCCCEEECCCCC
T ss_conf 97789887608211583968
No 3
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=3.15 E-value=56 Score=8.42 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=6.8
Q ss_pred CCCCCCCHHHH
Q ss_conf 12578897889
Q 000843 368 FFNFGLNEESW 378 (1258)
Q Consensus 368 YFNYGFnEeTW 378 (1258)
.|||||=-.||
T Consensus 48 P~nYGfiP~T~ 58 (170)
T d1qeza_ 48 PFNYGFIPGTL 58 (170)
T ss_dssp SSEEEECTTCC
T ss_pred CCCEEEEECCC
T ss_conf 75411131112
No 4
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]}
Probab=3.14 E-value=56 Score=8.41 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=8.1
Q ss_pred CCCCCCHHHHH
Q ss_conf 25788978899
Q 000843 369 FNFGLNEESWK 379 (1258)
Q Consensus 369 FNYGFnEeTWk 379 (1258)
|||||=-.||.
T Consensus 53 ~nYGfiP~T~~ 63 (173)
T d1twla_ 53 VDYGIIPRTWY 63 (173)
T ss_dssp SEEEECTTCCB
T ss_pred CCCCEEECCCC
T ss_conf 66561202134
No 5
>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.82 E-value=1.4e+02 Score=5.87 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=13.0
Q ss_pred HHHHHHHCCCCCCCCCCC
Q ss_conf 001010002365562111
Q 000843 812 HLDEIGARHRGKARESER 829 (1258)
Q Consensus 812 ~~de~g~R~R~K~Re~er 829 (1258)
--.+||||||-|-+-+..
T Consensus 39 ~Ys~~gSrHr~kr~~I~I 56 (78)
T d2jxta1 39 LYSEFGSKHRVPRSKVKI 56 (78)
T ss_dssp HHHHHHHHTCCCGGGEEE
T ss_pred HHHHHHHHCCCCCCCEEE
T ss_conf 999976651887342699
No 6
>d2o3bb1 d.221.1.1 (B:1-135) Nuclease A inhibitor (NuiA) {Anabaena sp., pcc 7120 [TaxId: 1167]}
Probab=2.82 E-value=1.4e+02 Score=5.86 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=9.7
Q ss_pred CCCCCCEEECCCCC-----CCCCCC
Q ss_conf 99996101147776-----789899
Q 000843 340 PSHKTIFEVDIDGF-----EEKPWK 359 (1258)
Q Consensus 340 P~~k~IfdvDID~l-----eeKPWR 359 (1258)
|...+|-.+++|.| .+.+|.
T Consensus 53 ~~~tpve~~~ld~Ff~~~~t~~~W~ 77 (135)
T d2o3bb1 53 GQDAPFKVVDIDSFFSRATTPQDWY 77 (135)
T ss_dssp CTTSCEEEECHHHHTHHHHCCCTTC
T ss_pred CCCCCCEEEEHHHHHCCCCCCCCCC
T ss_conf 9898604665988737467774545
No 7
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=2.70 E-value=1.5e+02 Score=5.72 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=14.5
Q ss_pred CCCCCCCCCCC-CCCCH-HHHHHHH
Q ss_conf 99999852125-78897-8899999
Q 000843 360 YPGVDITDFFN-FGLNE-ESWKDYC 382 (1258)
Q Consensus 360 kPGADISDYFN-YGFnE-eTWk~YC 382 (1258)
.-|.|+|++|+ |++.+ .++.++-
T Consensus 47 ~aGkD~t~~F~~~~~~~~Hs~~a~~ 71 (81)
T d1cxya_ 47 WCGQESTEAWETKSYGEPHSSLAAR 71 (81)
T ss_dssp GTTSBCHHHHHHTTTTCCCCHHHHH
T ss_pred HCCCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 8398620888851876659899999
No 8
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]}
Probab=2.63 E-value=61 Score=8.19 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 000843 369 FNFGLNEESW 378 (1258)
Q Consensus 369 FNYGFnEeTW 378 (1258)
|||||=-.||
T Consensus 53 ~nYGfiP~T~ 62 (174)
T d2prda_ 53 GDYGFIPSTL 62 (174)
T ss_dssp SEEEECSSCC
T ss_pred CCCCEECCCC
T ss_conf 7712152232
No 9
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.29 E-value=1.1e+02 Score=6.50 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96567999998667786689988878
Q 000843 273 SATAVAAGGPGQVRPLVNMGPAAGRG 298 (1258)
Q Consensus 273 a~~~~~~g~pgq~rp~~~~~~~aGrg 298 (1258)
|..+..+|-+|.|--+-| |||||
T Consensus 73 AeIIAqAG~~GaVTIATN---MAGRG 95 (219)
T d1nkta4 73 ATIIAVAGRRGGVTVATN---MAGRG 95 (219)
T ss_dssp HHHHHTTTSTTCEEEEET---TCSTT
T ss_pred HHHHHHCCCCCCEEEECC---CCCCC
T ss_conf 899996466883796200---04787
No 10
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.22 E-value=1.9e+02 Score=5.08 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8886621278999999996567999998667786689988
Q 000843 256 YHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA 295 (1258)
Q Consensus 256 ~HsqfKYVRPgaa~~pga~~~~~~g~pgq~rp~~~~~~~a 295 (1258)
...+|-+||||.+.+-..| .++ ++|.|.+...+
T Consensus 200 ~~~~~d~vR~Gi~lYG~~p------~~~-lkpvm~~~~~~ 232 (233)
T d1bd0a2 200 PDRTFNMVRFGIAMYGLAP------SPG-IKPLLPYPLKE 232 (233)
T ss_dssp TTSCTTEEEECGGGGTCCS------CGG-GGGGCSSCCCC
T ss_pred CCCCCCEECCCCEEECCCC------CCC-CCCCCCCCCCC
T ss_conf 8556978772942078798------888-98588878875
Done!