BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000845
(1255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 194/817 (23%), Positives = 346/817 (42%), Gaps = 125/817 (15%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
+K LP G T +G+RG LSGGQKQRI +ARAL ++ I LLD+ SALDA++ + + +
Sbjct: 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EGIVQQ 595
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHL---------LVTSQEF 615
+ A +T +++ H++ + D I+ G++++ + L LVT+Q F
Sbjct: 596 ALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTF 655
Query: 616 QDLVNAHKE------------TMGPETFGEHXXXXXXXXXXXXXXXXGHNNTSPADQLIK 663
D V++ E T E G P + +
Sbjct: 656 TDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPV--IDE 713
Query: 664 KEERETGD--TGLKPYIDYLSHKKGFLY---FTLSTFAYLIFLVAQILQSLWIATYI-PS 717
KEER D + LK ++ + +K L+ + A +F+ + + I +I P+
Sbjct: 714 KEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIG---MSTATIGGFIYPT 770
Query: 718 TSISRLKLVIVYSG-----IGIG----MMFLLLTR-----SFLVVYLGLEASESIFYKLM 763
S+ + V++G + G +MFL+L SFL+ + ASES+ L
Sbjct: 771 YSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLR 830
Query: 764 SSLFRAPMA----FYDS--TPVGRILSRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVV 817
+ LFR ++ F+DS G+I +R+ + + + T +++++ +
Sbjct: 831 NKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGL 890
Query: 818 LGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRA 877
WQ+ L+I+ I I+ Y R G ++ AS A++ G + I A
Sbjct: 891 AFFYGWQMALLIIA-ILPIVAFGQYLRG-----RRFTG-KNVKSASEFADS--GKIAIEA 941
Query: 878 FQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALC-TTLLHKGHK 936
+N A A +F+ +F + + + A + S C +++L+ +
Sbjct: 942 IENVRTVQAL------AREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNT 995
Query: 937 GAGYTGMAL-------------------------SFGLSLNDFLVYSVNNQCIVGNLIVS 971
A G+AL + G + + F Y+ G +I
Sbjct: 996 CAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYA--KATFAGGIIFG 1053
Query: 972 VERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLV--LRGITCTFE 1029
+ L + +I S + +K GKV +++ Y P P + L+G++ + E
Sbjct: 1054 M--LRKISKIDSLSLAGEKKK-------LYGKVIFKNVRFAY-PERPEIEILKGLSFSVE 1103
Query: 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPT 1089
G + +VG +G GK+T+++ L R + GG+ RS + I+ Q+PT
Sbjct: 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT 1163
Query: 1090 LFSGSVR----YNLDPLSQFTDQEIWEVTIPSQVLEKCQLREV---IQEKKEGLDSLVVQ 1142
LF S+ Y LDP S VT+ +QV E +L + I E EG ++ V
Sbjct: 1164 LFDCSIAENIIYGLDPSS---------VTM-AQVEEAARLANIHNFIAELPEGFETRVGD 1213
Query: 1143 DGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVA 1202
G S GQ DEAT+++D ++ ++Q + R T I +A
Sbjct: 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273
Query: 1203 HRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239
HR+ TVM+ + + +S+G ++E +L+ + + +
Sbjct: 1274 HRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYY 1310
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 119/252 (47%), Gaps = 15/252 (5%)
Query: 997 DWPPTGKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL 1054
D G + + ++ Y RP+ P +LRG+ G + +VG +G GK+T+IS L R
Sbjct: 409 DMKIKGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467
Query: 1055 VEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVT 1114
+ GK LR N+ ++ Q+P LF+ ++ N+ + +E
Sbjct: 468 YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE----- 522
Query: 1115 IPSQVLEKCQL---REVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXD 1171
+++ C++ + I+ G ++LV G S GQ D
Sbjct: 523 ---EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD 579
Query: 1172 EATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKL 1231
EAT+++D ++ I+Q + + T I +AHR++T+ + ++++S +G++VE + + L
Sbjct: 580 EATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRAL 639
Query: 1232 LRRQDSLFAQLV 1243
+ +Q L+ LV
Sbjct: 640 MAQQ-GLYYDLV 650
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 483 GAGKSTLLAAILGELPRLQGMD--LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQD 540
G S++ A + E RL + + LP G T++G+RG LSGGQKQRI +ARAL ++
Sbjct: 1176 GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN 1235
Query: 541 RDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEII 600
I LLD+ SALD ++ K + E + A +T +++ H+++ + D I ++S G II
Sbjct: 1236 PKILLLDEATSALDTESEK-VVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTII 1294
Query: 601 QAATYDHLL 609
+ T+ L+
Sbjct: 1295 EKGTHTQLM 1303
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
P LR +NL V + A+ G G GKST+++ +L L+G
Sbjct: 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 50/229 (21%)
Query: 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
+SI +++A +W A PTL I + A+ G+VG GKS+LL+A+L E+ +++G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 503 M-----------------------------------------------DLKMLPFGDLTQ 515
DL++LP GD T+
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 516 IGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV--MGALSKK 573
IGE+GVNLSGGQKQR+ LARA+Y + DIYL DDP SA+DA K +F + G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 574 TVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAH 622
T +LVTH + +LP D I+++SGG+I + +Y LL F + + +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 23/234 (9%)
Query: 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDL 1077
P L GIT + G + VVG+ G GK++L+SAL ++ G +
Sbjct: 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-------------I 64
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
+ ++ +PQ + + S+R N+ Q E V++ C L ++ G
Sbjct: 65 KGSVAYVPQQAWIQNDSLRENILFGCQL------EEPYYRSVIQACALLPDLEILPSGDR 118
Query: 1138 SLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASID-NATDSILQNTI--RREFA 1194
+ + + G N S GQ D+ +++D + I +N I +
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 1195 NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWS 1248
N T I V H ++ + ++++ MS GK+ E ++LL R D FA+ ++ Y S
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRTYAS 231
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Query: 998 WPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057
WP G++ + DL +Y +L I+ + G ++G++GRTGSGK+TL+SA RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 1058 TGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPS 1117
T G+ R G+IPQ +FSG+ R NLDP + +DQEIW+V
Sbjct: 73 TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA--- 129
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASI 1177
++ LR VI++ LD ++V G S G DE +A +
Sbjct: 130 ---DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 186
Query: 1178 DNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226
D T I++ T+++ FA+CTVI RI +++C+ L + + K+ +YD
Sbjct: 187 DPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYD 235
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVT 579
G LS G KQ + LAR++ I LLD+P + LD T + + + A + TV+L
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ-IIRRTLKQAFADCTVILCE 211
Query: 580 HQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+++ + D L+I ++ Q YD +L
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQ---YDSIL 238
Score = 36.6 bits (83), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL 494
N L NI+ + P ++ + G G+GKSTLL+A L
Sbjct: 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL 68
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 135/531 (25%), Positives = 232/531 (43%), Gaps = 48/531 (9%)
Query: 748 VYLGLEASESIFYKLMSSLF----RAPMAFYDSTPVGRILSRVXXXXXXXXXXXXXK--S 801
VYL + + I +L +SLF R +AF+D T G +++R+
Sbjct: 83 VYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSD 142
Query: 802 TIAVGTTMAV-ISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSL 860
+ G +V IS + +L +VP + +I V+ Y ++L ++ T+ SL
Sbjct: 143 GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL---RKLTKV--TQDSL 197
Query: 861 L-ASHLAETVAGAM-TIRAFQNEERFFAKNLDLIDAYASSFFHSFT-AREWLIQRLETLS 917
A+ LAE G + T+RAF K + I+ YAS H AR+ R
Sbjct: 198 AQATQLAEERIGNVRTVRAF-------GKEMTEIEKYASKVDHVMQLARKEAFARAGFFG 250
Query: 918 AIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQ 977
A L+ + + ++L+KG G M + L+ FL+Y+ +G L L +
Sbjct: 251 ATGLSGNLIVLSVLYKGGLLMGSAHMTVG---ELSSFLMYAFWVGISIGGLSSFYSELMK 307
Query: 978 YMRIPSEAPELVQKNSPAP--------DWPPTGKVEIYDLQIRY--RPNAPLVLRGITCT 1027
+ EL+++ P + G +E ++ Y RP P + + + +
Sbjct: 308 GLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP-IFQDFSLS 366
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQD 1087
G +VG +GSGK+T++S L RL +P G LRS +G + Q+
Sbjct: 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 426
Query: 1088 PTLFSGSVRYNL----DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143
P LFS S+ N+ D S T +EI V E I+ +G +++V +
Sbjct: 427 PILFSCSIAENIAYGADDPSSVTAEEIQRVA------EVANAVAFIRNFPQGFNTVVGEK 480
Query: 1144 GANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAH 1203
G S GQ DEAT+++D + ++Q + R TV+ +AH
Sbjct: 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH 540
Query: 1204 RIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV--KEYWSHAEK 1252
R++T+ + NMV + GK+ EY + ++LL + + ++ +L+ + + S AE
Sbjct: 541 RLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISAAEN 591
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
++ P G T +GE+GV LSGGQKQRI +ARAL ++ I LLD+ SALDA+ ++L E
Sbjct: 466 IRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQE 524
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+ + +TVL++ H++ + + + ++ G+I + ++ LL
Sbjct: 525 ALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 131/522 (25%), Positives = 228/522 (43%), Gaps = 46/522 (8%)
Query: 748 VYLGLEASESIFYKLMSSLF----RAPMAFYDSTPVGRILSRVXXXXXXXXXXXXXK--S 801
VYL + + I +L +SLF R +AF+D T G +++R+
Sbjct: 114 VYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSD 173
Query: 802 TIAVGTTMAV-ISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSL 860
+ G +V IS + +L +VP + +I V+ Y ++L ++ T+ SL
Sbjct: 174 GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL---RKLTKV--TQDSL 228
Query: 861 L-ASHLAETVAGAM-TIRAFQNEERFFAKNLDLIDAYASSFFHSFT-AREWLIQRLETLS 917
A+ LAE G + T+RAF K + I+ YAS H AR+ R
Sbjct: 229 AQATQLAEERIGNVRTVRAF-------GKEMTEIEKYASKVDHVMQLARKEAFARAGFFG 281
Query: 918 AIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQ 977
A L+ + + ++L+KG G M + L+ FL+Y+ +G L L +
Sbjct: 282 ATGLSGNLIVLSVLYKGGLLMGSAHMTVG---ELSSFLMYAFWVGISIGGLSSFYSELMK 338
Query: 978 YMRIPSEAPELVQKNSPAP--------DWPPTGKVEIYDLQIRY--RPNAPLVLRGITCT 1027
+ EL+++ P + G +E ++ Y RP P + + + +
Sbjct: 339 GLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP-IFQDFSLS 397
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQD 1087
G +VG +GSGK+T++S L RL +P G LRS +G + Q+
Sbjct: 398 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 457
Query: 1088 PTLFSGSVRYNL----DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143
P LFS S+ N+ D S T +EI +V E I+ +G +++V +
Sbjct: 458 PILFSCSIAENIAYGADDPSSVTAEEI------QRVAEVANAVAFIRNFPQGFNTVVGEK 511
Query: 1144 GANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAH 1203
G S GQ DEAT+++D + ++Q + R TV+ +AH
Sbjct: 512 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH 571
Query: 1204 RIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKE 1245
++T+ + NMV + GK+ EY + ++LL + + ++ +L+ +
Sbjct: 572 HLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNK 613
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
++ P G T +GE+GV LSGGQKQRI +ARAL ++ I LLD+ SALDA+ ++L E
Sbjct: 497 IRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQE 555
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+ + +TVL++ H + + + + ++ G+I + ++ LL
Sbjct: 556 ALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELL 600
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 227/534 (42%), Gaps = 69/534 (12%)
Query: 752 LEASESIFYKLMSSLF----RAPMAFYDSTPVGRILSRVXXXXXXXXXXXXXKSTIA--- 804
L S+ + ++L LF R P+ F+D TP G I+SRV S I
Sbjct: 102 LTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLG-NSIIQFFS 160
Query: 805 --VGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVL-----QNYYFATAKELMRINGTR 857
V AVI F V L+ V L IVP+ LI + + Y++ + L ++NG
Sbjct: 161 GIVTLAGAVIMMFRVNVILSL-VTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGI- 218
Query: 858 SSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLS 917
+ E ++G I+ F EE K ++ D S T + L L
Sbjct: 219 -------IEEDISGLTVIKLFTREE----KEMEKFDRVNESLRKVGTKAQIFSGVLPPLM 267
Query: 918 AIVLATSALCTTLLHKGHKG-------------AGYTGMALSFGLSLNDFLVYSVNNQCI 964
+V + L L+ G G A + G + F LN+ N +
Sbjct: 268 NMV---NNLGFALI-SGFGGWLALKDIITVGTIATFIGYSRQFTRPLNEL----SNQFNM 319
Query: 965 VGNLIVSVERLNQYMRIPSEA--PELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLR 1022
+ + S ER+ + + + E P+ V+ G++E ++ Y P VL+
Sbjct: 320 IQMALASAERIFEILDLEEEKDDPDAVELREVR------GEIEFKNVWFSYDKKKP-VLK 372
Query: 1023 GITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLG 1082
IT + G K+ +VG TGSGKTT+++ L R + G+ LRS++G
Sbjct: 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432
Query: 1083 IIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
I+ QD LFS +V+ NL +P + TD+EI E + I+ EG +++
Sbjct: 433 IVLQDTILFSTTVKENLKYGNPGA--TDEEIKEAA------KLTHSDHFIKHLPEGYETV 484
Query: 1140 VVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVI 1199
+ +G + S GQ DEAT+++D T+ +Q + + T I
Sbjct: 485 LTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSI 544
Query: 1200 TVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHAEKH 1253
+AHR+ T+ + ++++ + DG++VE + +L++++ + +Y EK
Sbjct: 545 IIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGLVVEKE 598
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
+K LP G T + + G +LS GQ+Q + + RA + I +LD+ S +D KT K + +
Sbjct: 474 IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI--Q 531
Query: 565 YVMGALSK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
M L + KT +++ H+++ + D I+++ GEI++ +D L+
Sbjct: 532 AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELI 577
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 119/288 (41%), Gaps = 37/288 (12%)
Query: 225 GDIVNYVTVDAYRIGE-FPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLG 283
GDI++ V D I Q +S + L AV++++ + ++ TL ++ LTVL
Sbjct: 134 GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLI 193
Query: 284 NSPLAKLQHKYQETFMTAQNKRLKA-----ITEVLVNMKVLKLYAWDSY----FKNVIEK 334
++ KY +N+R+ I E + + V+KL+ + F V E
Sbjct: 194 TQIVSSQTRKY-----FYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNES 248
Query: 335 LRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIP--------LNPSNVFT 386
LR KV + + VL P++ L G + + T
Sbjct: 249 LR-------KVGTKAQIFSGVL---PPLMNMVNNLGFALISGFGGWLALKDIITVGTIAT 298
Query: 387 FLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIF 446
F+ R P+ L + F A S +RI L+ E + D V R E+ I
Sbjct: 299 FIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE-EKDDPDAVELR-EVRGEIE 356
Query: 447 IKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL 494
K+ S+ D P L++I +KP +K A+ G G+GK+T++ ++
Sbjct: 357 FKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 177/809 (21%), Positives = 331/809 (40%), Gaps = 127/809 (15%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP T +GERG LSGGQKQRI +ARAL ++ I LLD+ SALD ++ V
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV-----VQ 566
Query: 568 GALSK----KTVLLVTHQV------DFLPAFDSILLISGG---EIIQAATYDHLLVTSQE 614
AL K +T +++ H++ D + FD +++ G E+++ LV +Q
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 615 FQDLVNAHKETMGPETFGEHXXXXXXXXXXXXXXXXGHNNT--SPADQLIKKEERETGDT 672
+ + E + ++ + P DQ K +E D
Sbjct: 627 AGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDE 686
Query: 673 GLKP----YIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIV 728
+ P I L+ + + YF + F +I Q P+ S+ K+V V
Sbjct: 687 DVPPASFWRILKLNSTE-WPYFVVGIFCAIINGGLQ-----------PAFSVIFSKVVGV 734
Query: 729 YSGIG-----------IGMMFLLL-TRSFLVVYL--------GLEASESIFYKLMSSLFR 768
++ G ++FL+L SF+ +L G ++ + Y + S+ R
Sbjct: 735 FTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLR 794
Query: 769 APMAFYDS--TPVGRILSRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGAL-TWQV 825
++++D G + +R+ + + + +A + T +++ + WQ+
Sbjct: 795 QDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAV-IFQNIANLGTGIIISLIYGWQL 853
Query: 826 ---LLVIVPMIYLIIVLQNYYFATA--KELMRINGTRSSLLASHLAETVAGAMTIRAFQN 880
LL IVP+I + V++ + K+ + G S +A+ E +++ Q
Sbjct: 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG--SGKIATEAIENFRTVVSLTREQK 911
Query: 881 EERFFAKNLD------LIDAYASSFFHSFT--------------AREWLIQRLETLSAIV 920
E +A++L + A+ SFT + Q+L T ++
Sbjct: 912 FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVL 971
Query: 921 LATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMR 980
L SA+ GA G SF D+ +V+ I+ R
Sbjct: 972 LVFSAIVF--------GAMAVGQVSSFA---PDYAKATVSASHII--------------R 1006
Query: 981 IPSEAPELVQKNSPA--PDWPPTGKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGV 1036
I + PE+ ++ P+ G V+ + Y RP+ P VL+G++ + G + +
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLE-GNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLAL 1064
Query: 1037 VGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVR 1096
VG +G GK+T++ L R +P G LR+ LGI+ Q+P LF S+
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Query: 1097 YNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXX 1153
N+ D + +EI + ++ + + I + ++ V G S GQ
Sbjct: 1125 ENIAYGDNSRVVSYEEI------VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ 1178
Query: 1154 XXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNM 1213
DEAT+++D ++ ++Q + + T I +AHR++T+ + ++
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADL 1238
Query: 1214 VLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
++ + +GK+ E+ ++LL ++ F+ +
Sbjct: 1239 IVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 112/250 (44%), Gaps = 7/250 (2%)
Query: 991 KNSPAPDWPPTGKVEIYDLQIRYRPNAPL-VLRGITCTFEGGHKIGVVGRTGSGKTTLIS 1049
K+ PD G +E ++ Y + +L+G+ + G + +VG +G GK+T +
Sbjct: 376 KSGHKPD-NIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
Query: 1050 ALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQE 1109
+ RL +P G LR +G++ Q+P LF+ ++ N+ ++ ++
Sbjct: 435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENI----RYGRED 490
Query: 1110 IWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXX 1169
+ I V E + I + D+LV + GA S GQ
Sbjct: 491 VTMDEIEKAVKE-ANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL 549
Query: 1170 XDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPK 1229
DEAT+++D +++++Q + + T I +AHR++TV + +++ G +VE
Sbjct: 550 LDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Query: 1230 KLLRRQDSLF 1239
+L+R + F
Sbjct: 610 ELMREKGIYF 619
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 402 PDVFGAFIEAKVSLDRIANFLE-APELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLN 460
PD + +A VS I +E PE+ + Q + LE ++ ++
Sbjct: 992 PD----YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM-LEGNVQFSGVVFNYPTRPSI 1046
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLL 490
P L+ ++LEVK + A+ G G GKST++
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 178/809 (22%), Positives = 333/809 (41%), Gaps = 127/809 (15%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP T +GERG LSGGQKQRI +ARAL ++ I LLD+ SALD ++ V
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV-----VQ 566
Query: 568 GALSK----KTVLLVTHQV------DFLPAFDSILLISGG---EIIQAATYDHLLVTSQE 614
AL K +T +++ H++ D + FD +++ G E+++ LV +Q
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 615 FQDLVNAHKETMGPETFGEHXXXXXXXXXXXXXXXXGHNNT--SPADQLIKKEERETGDT 672
+ + E + ++ + P DQ K +E D
Sbjct: 627 AGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDE 686
Query: 673 GLKP----YIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIV 728
+ P I L+ + + YF + F +I Q P+ S+ K+V V
Sbjct: 687 DVPPASFWRILKLNSTE-WPYFVVGIFCAIINGGLQ-----------PAFSVIFSKVVGV 734
Query: 729 YSGIG-----------IGMMFLLL-TRSFLVVYL--------GLEASESIFYKLMSSLFR 768
++ G ++FL+L SF+ +L G ++ + Y + S+ R
Sbjct: 735 FTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLR 794
Query: 769 APMAFYDS--TPVGRILSRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGAL-TWQV 825
++++D G + +R+ + + + +A + T +++ + WQ+
Sbjct: 795 QDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAV-IFQNIANLGTGIIISLIYGWQL 853
Query: 826 ---LLVIVPMIYLIIVLQNYYFATA--KELMRINGTRSSLLASHLAETVAGAMTIRAFQN 880
LL IVP+I + V++ + K+ + G S +A+ E +++ Q
Sbjct: 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG--SGKIATEAIENFRTVVSLTREQK 911
Query: 881 EERFFAKNLD------LIDAYASSFFHSFTAR-------------EWLI-QRLETLSAIV 920
E +A++L + A+ SFT +L+ Q+L T ++
Sbjct: 912 FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVL 971
Query: 921 LATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMR 980
L SA+ GA G SF D+ +V+ I+ R
Sbjct: 972 LVFSAIVF--------GAMAVGQVSSFA---PDYAKATVSASHII--------------R 1006
Query: 981 IPSEAPELVQKNSPA--PDWPPTGKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGV 1036
I + PE+ ++ P+ G V+ + Y RP+ P VL+G++ + G + +
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLE-GNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLAL 1064
Query: 1037 VGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVR 1096
VG +G GK+T++ L R +P G LR+ LGI+ Q+P LF S+
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Query: 1097 YNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXX 1153
N+ D + +EI + ++ + + I + ++ V G S GQ
Sbjct: 1125 ENIAYGDNSRVVSYEEI------VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ 1178
Query: 1154 XXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNM 1213
DEAT+++D ++ ++Q + + T I +AHR++T+ + ++
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADL 1238
Query: 1214 VLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
++ + +GK+ E+ ++LL ++ F+ +
Sbjct: 1239 IVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 112/250 (44%), Gaps = 7/250 (2%)
Query: 991 KNSPAPDWPPTGKVEIYDLQIRYRPNAPL-VLRGITCTFEGGHKIGVVGRTGSGKTTLIS 1049
K+ PD G +E ++ Y + +L+G+ + G + +VG +G GK+T +
Sbjct: 376 KSGHKPD-NIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
Query: 1050 ALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQE 1109
+ RL +P G LR +G++ Q+P LF+ ++ N+ ++ ++
Sbjct: 435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENI----RYGRED 490
Query: 1110 IWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXX 1169
+ I V E + I + D+LV + GA S GQ
Sbjct: 491 VTMDEIEKAVKE-ANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL 549
Query: 1170 XDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPK 1229
DEAT+++D +++++Q + + T I +AHR++TV + +++ G +VE
Sbjct: 550 LDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Query: 1230 KLLRRQDSLF 1239
+L+R + F
Sbjct: 610 ELMREKGIYF 619
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 372 CYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGA------------FIEAKVSLDRIA 419
C+ G L + TF L + VFGA + +A VS I
Sbjct: 952 CFRFGAYLVTQQLMTFENVLLVFSAI------VFGAMAVGQVSSFAPDYAKATVSASHII 1005
Query: 420 NFLE-APELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAI 478
+E PE+ + Q + LE ++ ++ P L+ ++LEVK + A+
Sbjct: 1006 RIIEKTPEIDSYSTQGLKPNM-LEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064
Query: 479 CGEVGAGKSTLL 490
G G GKST++
Sbjct: 1065 VGSSGCGKSTVV 1076
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/441 (22%), Positives = 194/441 (43%), Gaps = 40/441 (9%)
Query: 805 VGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASH 864
VG + +S V L + VL+ ++P I L+ V + L R + +
Sbjct: 152 VGGIVMAVSINVKLSS----VLIFLIPPIVLLFV---WLTKKGNPLFRKIQESTDEVNRV 204
Query: 865 LAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS 924
+ E + G +RAF+ EE Y + F A E L + + + ++++
Sbjct: 205 VRENLLGVRVVRAFRREE------------YENENFRK--ANESLRRSIISAFSLIVFAL 250
Query: 925 ALCTTLLHKGHKGAGYTG--------MALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLN 976
L +++ G + G M + ++ ++L+ + + ++GN++ + R +
Sbjct: 251 PLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRAS 310
Query: 977 ----QYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGH 1032
+ + + +E P + + ++ G V +++ RY N VL G+ + + G
Sbjct: 311 ASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGS 370
Query: 1033 KIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFS 1092
+ V+G TGSGK+TL++ + RL++P G+ DLR ++ +PQ+ LFS
Sbjct: 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS 430
Query: 1093 GSVRYNLD-PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151
G+++ NL TD EI E + Q+ + I EG DS V + G N+S GQ
Sbjct: 431 GTIKENLKWGREDATDDEIVEAA------KIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484
Query: 1152 XXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDC 1211
D+ T+S+D T+ + + ++R CT + +I T +
Sbjct: 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLA 544
Query: 1212 NMVLSMSDGKLVEYDEPKKLL 1232
+ +L + +GK+ + K+LL
Sbjct: 545 DKILVLHEGKVAGFGTHKELL 565
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL---FTE 564
LP G +++ G N SGGQKQR+ +ARAL + + +LDD S++D T K +
Sbjct: 465 LPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
Y G T ++T ++ D IL++ G++ T+ LL + ++++
Sbjct: 525 YTKGC----TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREI 574
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 5/235 (2%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
+++ RY+P++P++L I + + G IG+VGR+GSGK+TL + R P G+
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
LR +G++ QD L + S+ +D +S E I + L +
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSI---IDNISLANPGMSVEKVIYAAKLAGAH--D 122
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN 1187
I E +EG +++V + GA S GQ DEAT+++D ++ ++
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+ + TVI +AHR++TV + + ++ M GK+VE + K+LL +SL++ L
Sbjct: 183 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ + M + K
Sbjct: 133 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKG 190
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+TV+++ H++ + D I+++ G+I++ + LL
Sbjct: 191 RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 442 EHSIFIKSADLSWEADLLNPT-LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
H I ++ ++ D +P L NINL +K E I G G+GKSTL I
Sbjct: 1 HHDITFRNIRFRYKPD--SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 51
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 5/235 (2%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
+++ RY+P++P++L I + + G IG+VGR+GSGK+TL + R P G+
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
LR +G++ QD L + S+ +D +S E I + L +
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSI---IDNISLANPGMSVEKVIYAAKLAGAH--D 120
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN 1187
I E +EG +++V + GA S GQ DEAT+++D ++ ++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+ + TVI +AHR++TV + + ++ M GK+VE + K+LL +SL++ L
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ + M + K
Sbjct: 131 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKG 188
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+TV+++ H++ + D I+++ G+I++ + LL
Sbjct: 189 RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
L NINL +K E I G G+GKSTL I
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 5/235 (2%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
+++ RY+P++P++L I + + G IG+VGR+GSGK+TL + R P G+
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
LR +G++ QD L + S+ +D +S E I + L +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSI---IDNISLANPGMSVEKVIYAAKLAGAH--D 126
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN 1187
I E +EG +++V + GA S GQ DEAT+++D ++ ++
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+ + TVI +AHR++TV + + ++ M GK+VE + K+LL +SL++ L
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ + M + K
Sbjct: 137 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKG 194
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+TV+++ H++ + D I+++ G+I++ + LL
Sbjct: 195 RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
L NINL +K E I G G+GKSTL I
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 5/235 (2%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
+++ RY+P++P++L I + + G IG+VGR GSGK+TL + R P G+
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
LR +G++ QD L + S+ +D +S E I + L +
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSI---IDNISLANPGMSVEKVIYAAKLAGAH--D 122
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN 1187
I E +EG +++V + GA S GQ DEAT+++D ++ ++
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+ + TVI +AHR++TV + + ++ M GK+VE + K+LL +SL++ L
Sbjct: 183 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ + M + K
Sbjct: 133 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKG 190
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+TV+++ H++ + D I+++ G+I++ + LL
Sbjct: 191 RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 442 EHSIFIKSADLSWEADLLNPT-LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
H I ++ ++ D +P L NINL +K E I G G+GKSTL I
Sbjct: 1 HHDITFRNIRFRYKPD--SPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI 51
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 108/243 (44%), Gaps = 52/243 (21%)
Query: 437 SRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGE 496
S + +HS + S + NP L+NINL ++ E AI G G+GK++LL ILGE
Sbjct: 28 SNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 87
Query: 497 LPRLQGM----------------------------------------------DLKMLPF 510
L +G+ D+
Sbjct: 88 LEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAE 147
Query: 511 GDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL 570
D T +GE GV LSGGQ+ RI LARA+Y+D D+YLLD PF LD T + +F V +
Sbjct: 148 QDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 207
Query: 571 SKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPET 630
+ KT +LVT +++ L D IL++ G T+ L +F + MG +T
Sbjct: 208 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFS------SKLMGYDT 261
Query: 631 FGE 633
F +
Sbjct: 262 FDQ 264
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 79/202 (39%), Gaps = 21/202 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + + G TGSGKT+L+ + +E + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
+ Q + G+++ N+ +S ++ V++ CQL++ I + E +++
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGVS-------YDEYRYKSVVKACQLQQDITKFAEQDNTV 152
Query: 1140 VVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDS-ILQNTIRREFANCTV 1198
+ + G S GQ D +D T+ + ++ + + AN T
Sbjct: 153 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 212
Query: 1199 ITVAHRIATVMDCNMVLSMSDG 1220
I V ++ + + +L + G
Sbjct: 213 ILVTSKMEHLRKADKILILHQG 234
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 118/235 (50%), Gaps = 5/235 (2%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
+++ RY+P++P++L I + + G IG+VGR+GSGK+TL + R P G+
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
LR +G++ QD L + S+ +D +S E I + L +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSI---IDNISLANPGMSVEKVIYAAKLAGAH--D 126
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN 1187
I E +EG +++V + GA S GQ D+AT+++D ++ ++
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+ + TVI +AHR++TV + + ++ M GK+VE + K+LL +SL++ L
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T +GE+G LSGGQ+QRI +ARAL + I + D SALD ++ + M + K
Sbjct: 137 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN--MHKICKG 194
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+TV+++ H++ + D I+++ G+I++ + LL
Sbjct: 195 RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
L NINL +K E I G G+GKSTL I
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 53/244 (21%)
Query: 437 SRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGE 496
S + +HS + S + NP L+NINL ++ E AI G G+GK++LL ILGE
Sbjct: 28 SNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 87
Query: 497 LPRLQGM-----------------------------------------------DLKMLP 509
L +G+ D+
Sbjct: 88 LEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFA 147
Query: 510 FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA 569
D T +GE GV LSGGQ+ RI LARA+Y+D D+YLLD PF LD T + +F V
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 570 LSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPE 629
++ KT +LVT +++ L D IL++ G T+ L +F + MG +
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFS------SKLMGYD 261
Query: 630 TFGE 633
TF +
Sbjct: 262 TFDQ 265
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060
VL+ I E G + + G TGSGKT+L+ + +E + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 53/244 (21%)
Query: 437 SRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGE 496
S + +HS + S + NP L+NINL ++ E AI G G+GK++LL ILGE
Sbjct: 28 SNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 87
Query: 497 LPRLQGM-----------------------------------------------DLKMLP 509
L +G+ D+
Sbjct: 88 LEASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFA 147
Query: 510 FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA 569
D T +GE GV LSGGQ+ RI LARA+Y+D D+YLLD PF LD T + +F V
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 570 LSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPE 629
++ KT +LVT +++ L D IL++ G T+ L +F + MG +
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFS------SKLMGYD 261
Query: 630 TFGE 633
TF +
Sbjct: 262 TFDQ 265
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 20/202 (9%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + + G TGSGKT+L+ + +E + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-------------IIKHSG 99
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
+ Q + G+++ N+ + + V++ CQL++ I + E +++
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRY------KSVVKACQLQQDITKFAEQDNTV 153
Query: 1140 VVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDS-ILQNTIRREFANCTV 1198
+ + G S GQ D +D T+ + ++ + + AN T
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 213
Query: 1199 ITVAHRIATVMDCNMVLSMSDG 1220
I V ++ + + +L + G
Sbjct: 214 ILVTSKMEHLRKADKILILHQG 235
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 53/244 (21%)
Query: 437 SRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGE 496
S + +HS + S + NP L+NINL ++ E AI G G+GK++LL ILGE
Sbjct: 28 SNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 87
Query: 497 LPRLQGM-----------------------------------------------DLKMLP 509
L +G+ D+
Sbjct: 88 LEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFA 147
Query: 510 FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA 569
D T +GE GV LSGGQ+ RI LARA+Y+D D+YLLD PF LD T + +F V
Sbjct: 148 EQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 570 LSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPE 629
++ KT +LVT +++ L D IL++ G T+ L +F + MG +
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFS------SKLMGYD 261
Query: 630 TFGE 633
TF +
Sbjct: 262 TFDQ 265
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060
VL+ I E G + + G TGSGKT+L+ + +E + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 100/221 (45%), Gaps = 53/221 (23%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM---------------- 503
NP L+NINL ++ E AI G G+GK++LL ILGEL +G+
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 504 -------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQ 532
D+ D T +GE GV LSGGQ+ RI
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSIL 592
LARA+Y+D D+YLLD PF LD T + +F V ++ KT +LVT +++ L D IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 593 LISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETFGE 633
++ G T+ L +F + MG +TF +
Sbjct: 231 ILHQGSSYFYGTFSELQSLRPDFS------SKLMGYDTFDQ 265
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 79/206 (38%), Gaps = 28/206 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + + G TGSGKT+L+ + +E + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPS----QVLEKCQLREVIQEKKEG 1135
+ Q + G+++ N+ I+ V+ V++ CQL++ I + E
Sbjct: 100 RVSFCSQFSWIMPGTIKENI----------IFGVSYDEYRYKSVVKACQLQQDITKFAEQ 149
Query: 1136 LDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDS-ILQNTIRREFA 1194
++++ + G S GQ D +D T+ + ++ + + A
Sbjct: 150 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 1195 NCTVITVAHRIATVMDCNMVLSMSDG 1220
N T I V ++ + + +L + G
Sbjct: 210 NKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 5/235 (2%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
+++ RY+P++P++L I + + G IG+VGR+GSGK+TL + R P G+
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
LR +G++ QD L + S+ +D +S E I + L +
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSI---IDNISLANPGMSVEKVIYAAKLAGAH--D 120
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN 1187
I E +EG +++V + GA S GQ DEAT+++D ++ ++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+ + TVI +A R++TV + + ++ M GK+VE + K+LL +SL++ L
Sbjct: 181 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ + M + K
Sbjct: 131 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKG 188
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+TV+++ ++ + D I+++ G+I++ + LL
Sbjct: 189 RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTL 489
L NINL +K E I G G+GKSTL
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTL 45
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 5/235 (2%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
+++ RY+P++P++L I + + G IG+VGR+GSGK+TL + R P G+
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
LR +G++ QD L + S+ +D +S E I + L +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSI---IDNISLANPGMSVEKVIYAAKLAGAH--D 126
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN 1187
I E +EG +++V + GA S GQ DEAT+++D ++ ++
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+ + TVI +A R++TV + + ++ M GK+VE + K+LL +SL++ L
Sbjct: 187 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ + M + K
Sbjct: 137 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKG 194
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+TV+++ ++ + D I+++ G+I++ + LL
Sbjct: 195 RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTL 489
L NINL +K E I G G+GKSTL
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTL 51
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 119/531 (22%), Positives = 215/531 (40%), Gaps = 52/531 (9%)
Query: 731 GIGIGMMFLLLTR---SFLVVYLGLEASESIFYKLMSSLFRAPMA----FYDSTPVGRIL 783
IGI + ++ R F+ YL S I Y + L+ A FY + VG+++
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 784 SRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQVLLVI-----VPMIYLIIV 838
SRV K I G + ++ AL+ L + I+ +
Sbjct: 122 SRVINDVEQT------KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYI 175
Query: 839 LQNY-YFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYAS 897
L Y +F ++L R + + L E V G +++F E+ AKN D +
Sbjct: 176 LTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNE-AKNFDKKNT--- 231
Query: 898 SFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVY 957
+F R R S + T ++ G GA +A+S +++ +
Sbjct: 232 ----NFLTRALKHTRWNAYSFAAINTVTDIGPIIVIG-VGAY---LAISGSITVGTLAAF 283
Query: 958 SVNNQCIVG---NLIVSVERLNQYMRIPSEAPELVQKN-------SPAPDWPPTGKVEIY 1007
+ + G L+ S L Q +L+ ++ P G+++I
Sbjct: 284 VGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDID 343
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
+ +Y N +L+ I + E G + VG +G GK+TLI+ + R + T G+
Sbjct: 344 HVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQ 1124
LR+ +G++ QD LFS +V+ N+ P + TD+E+ E +
Sbjct: 404 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA--TDEEVVEAA------KMAN 455
Query: 1125 LREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSI 1184
+ I +G D+ V + G S GQ DEAT+++D ++SI
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 1185 LQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQ 1235
+Q + + T + VAHR++T+ + ++ + +G +VE ++L+ +Q
Sbjct: 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T++GERGV LSGGQKQR+ +AR + I +LD+ SALD ++ + + +
Sbjct: 463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII--QEAL 520
Query: 568 GALSK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
LSK +T L+V H++ + D I++I G I++ T+ L+ ++ L
Sbjct: 521 DVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/521 (19%), Positives = 216/521 (41%), Gaps = 29/521 (5%)
Query: 734 IGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLF----RAPMAFYDSTPVGRILSRVXXX 789
+G+MF+ F Y S ++ ++ LF P+ F+D G +LSR+
Sbjct: 72 LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYD 131
Query: 790 XXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQ---VLLVIVPMIYLIIVLQNYYFAT 846
V ++I ++ +WQ VL+V+ P++ I + F
Sbjct: 132 SEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRF-- 189
Query: 847 AKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEE---RFFAKNLDLIDAYASSFFHSF 903
+++ R T + S + + G + ++ +E + F K + + +
Sbjct: 190 -RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQ 248
Query: 904 TAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQC 963
+ + +IQ + +L+ + A ++ + G + FGL + SV ++
Sbjct: 249 SIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEF 308
Query: 964 IVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRG 1023
G + + + L M + +E + N G+V++ D+ Y+ L
Sbjct: 309 QRG--MAACQTLFGLMDLETE-----RDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSH 361
Query: 1024 ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGI 1083
++ + G + +VGR+GSGK+T+ + R + G +LR + +
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421
Query: 1084 IPQDPTLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVV 1141
+ Q+ LF+ ++ N+ ++T ++I Q + E I+ +GLD+++
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQI------EQAARQAHAMEFIENMPQGLDTVIG 475
Query: 1142 QDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITV 1201
++G + S GQ DEAT+++D ++ +Q + N TV+ +
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535
Query: 1202 AHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
AHR++T+ + +L + +G+++E LL QD +AQL
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLL-AQDGAYAQL 575
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
++ +P G T IGE G +LSGGQ+QR+ +ARAL +D + +LD+ SALD ++ + + +
Sbjct: 463 IENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI--Q 520
Query: 565 YVMGALSK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
+ L K KTVL++ H++ + D IL++ GEII+ + LL + L
Sbjct: 521 AALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 46/194 (23%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM----------------- 503
P L++IN +++ + A+ G GAGK++LL I+GEL +G
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 504 -----------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLA 534
D+ D +GE G+ LSGGQ+ RI LA
Sbjct: 82 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 141
Query: 535 RALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLI 594
RA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D IL++
Sbjct: 142 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 201
Query: 595 SGGEIIQAATYDHL 608
G T+ L
Sbjct: 202 HEGSSYFYGTFSEL 215
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 21/202 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + V G TG+GKT+L+ + +EP+ GK
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 69
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
+ Q + G+++ N+ +S ++ V++ CQL E I + E + +
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIV 122
Query: 1140 VVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQNTIRREFANCTV 1198
+ + G S GQ D +D T+ I ++ + + AN T
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 182
Query: 1199 ITVAHRIATVMDCNMVLSMSDG 1220
I V ++ + + +L + +G
Sbjct: 183 ILVTSKMEHLKKADKILILHEG 204
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 46/197 (23%)
Query: 458 LLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------- 503
L P L++IN +++ + A+ G GAGK++LL I+GEL +G
Sbjct: 49 LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNS 108
Query: 504 --------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRI 531
D+ D +GE G+ LSGGQ+ RI
Sbjct: 109 WIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSI 591
LARA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 592 LLISGGEIIQAATYDHL 608
L++ G T+ L
Sbjct: 229 LILHEGSSYFYGTFSEL 245
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 21/202 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + V G TG+GKT+L+ + +EP+ GK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
+ Q+ + G+++ N+ +S ++ V++ CQL E I + E + +
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 1140 VVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQNTIRREFANCTV 1198
+ + G S GQ D +D T+ I ++ + + AN T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1199 ITVAHRIATVMDCNMVLSMSDG 1220
I V ++ + + +L + +G
Sbjct: 213 ILVTSKMEHLKKADKILILHEG 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 46/197 (23%)
Query: 458 LLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------- 503
L P L++IN +++ + A+ G GAGK++LL I+GEL +G
Sbjct: 49 LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNS 108
Query: 504 --------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRI 531
D+ D +GE G+ LSGGQ+ RI
Sbjct: 109 WIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSI 591
LARA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 592 LLISGGEIIQAATYDHL 608
L++ G T+ L
Sbjct: 229 LILHEGSSYFYGTFSEL 245
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 21/202 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + V G TG+GKT+L+ + +EP+ GK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
+ Q+ + G+++ N+ +S ++ V++ CQL E I + E + +
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 1140 VVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQNTIRREFANCTV 1198
+ + G S GQ D +D T+ I ++ + + AN T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1199 ITVAHRIATVMDCNMVLSMSDG 1220
I V ++ + + +L + +G
Sbjct: 213 ILVTSKMEHLKKADKILILHEG 234
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 47/198 (23%)
Query: 458 LLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------- 503
L P L++IN +++ + A+ G GAGK++LL I+GEL +G
Sbjct: 49 LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFS 108
Query: 504 ---------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQR 530
D+ D +GE G+ LSGGQ+ R
Sbjct: 109 WIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRAR 168
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDS 590
I LARA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 228
Query: 591 ILLISGGEIIQAATYDHL 608
IL++ G T+ L
Sbjct: 229 ILILHEGSSYFYGTFSEL 246
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 20/202 (9%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + V G TG+GKT+L+ + +EP+ GK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
+ Q + G+++ N+ + + V++ CQL E I + E + +
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRY------RSVIKACQLEEDISKFAEKDNIV 153
Query: 1140 VVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQNTIRREFANCTV 1198
+ + G S GQ D +D T+ I ++ + + AN T
Sbjct: 154 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 1199 ITVAHRIATVMDCNMVLSMSDG 1220
I V ++ + + +L + +G
Sbjct: 214 ILVTSKMEHLKKADKILILHEG 235
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 47/195 (24%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM----------------- 503
P L++IN +++ + A+ G GAGK++LL I+GEL +G
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 93
Query: 504 ------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQL 533
D+ D +GE G+ LSGGQ+ RI L
Sbjct: 94 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 153
Query: 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILL 593
ARA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D IL+
Sbjct: 154 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 213
Query: 594 ISGGEIIQAATYDHL 608
+ G T+ L
Sbjct: 214 LHEGSSYFYGTFSEL 228
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 28/206 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + V G TG+GKT+L+ + +EP+ GK
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 81
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPS----QVLEKCQLREVIQEKKEG 1135
+ Q + G+++ N+ I+ V+ V++ CQL E I + E
Sbjct: 82 RISFCSQFSWIMPGTIKENI----------IFGVSYDEYRYRSVIKACQLEEDISKFAEK 131
Query: 1136 LDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQNTIRREFA 1194
+ ++ + G S GQ D +D T+ I ++ + + A
Sbjct: 132 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 1195 NCTVITVAHRIATVMDCNMVLSMSDG 1220
N T I V ++ + + +L + +G
Sbjct: 192 NKTRILVTSKMEHLKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 47/195 (24%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM----------------- 503
P L++IN +++ + A+ G GAGK++LL I+GEL +G
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 504 ------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQL 533
D+ D +GE G+ LSGGQ+ RI L
Sbjct: 82 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 141
Query: 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILL 593
ARA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D IL+
Sbjct: 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 201
Query: 594 ISGGEIIQAATYDHL 608
+ G T+ L
Sbjct: 202 LHEGSSYFYGTFSEL 216
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 28/229 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + V G TG+GKT+L+ + +EP+ GK
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 69
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPS----QVLEKCQLREVIQEKKEG 1135
+ Q + G+++ N+ I+ V+ V++ CQL E I + E
Sbjct: 70 RISFCSQFSWIMPGTIKENI----------IFGVSYDEYRYRSVIKACQLEEDISKFAEK 119
Query: 1136 LDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQNTIRREFA 1194
+ ++ + G S GQ D +D T+ I ++ + + A
Sbjct: 120 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 1195 NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
N T I V ++ + + +L + +G Y +L Q ++L+
Sbjct: 180 NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 228
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 46/194 (23%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM----------------- 503
P L++IN +++ + A+ G GAGK++LL I+GEL +G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 504 -----------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLA 534
D+ D +GE G+ LS GQ+ +I LA
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLA 171
Query: 535 RALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLI 594
RA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D IL++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231
Query: 595 SGGEIIQAATYDHL 608
G T+ L
Sbjct: 232 HEGSSYFYGTFSEL 245
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 21/202 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + V G TG+GKT+L+ + +EP+ GK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
+ Q + G+++ N+ +S ++ V++ CQL E I + E + +
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 1140 VVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQNTIRREFANCTV 1198
+ + G S GQ D +D T+ I ++ + + AN T
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1199 ITVAHRIATVMDCNMVLSMSDG 1220
I V ++ + + +L + +G
Sbjct: 213 ILVTSKMEHLKKADKILILHEG 234
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 47/195 (24%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM----------------- 503
P L++IN +++ + A+ G GAGK++LL I+GEL +G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 504 ------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQL 533
D+ D +GE G+ LS GQ+ +I L
Sbjct: 112 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 171
Query: 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILL 593
ARA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D IL+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 594 ISGGEIIQAATYDHL 608
+ G T+ L
Sbjct: 232 LHEGSSYFYGTFSEL 246
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 28/206 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
VL+ I E G + V G TG+GKT+L+ + +EP+ GK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPS----QVLEKCQLREVIQEKKEG 1135
+ Q + G+++ N+ I+ V+ V++ CQL E I + E
Sbjct: 100 RISFCSQFSWIMPGTIKENI----------IFGVSYDEYRYRSVIKACQLEEDISKFAEK 149
Query: 1136 LDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQNTIRREFA 1194
+ ++ + G S GQ D +D T+ I ++ + + A
Sbjct: 150 DNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 1195 NCTVITVAHRIATVMDCNMVLSMSDG 1220
N T I V ++ + + +L + +G
Sbjct: 210 NKTRILVTSKMEHLKKADKILILHEG 235
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 113/528 (21%), Positives = 219/528 (41%), Gaps = 39/528 (7%)
Query: 734 IGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFR----APMAFYDSTPVGRILSRVXXX 789
IG+M L S++ Y S + + LF P+AF+D G +LSR+
Sbjct: 72 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYD 131
Query: 790 XXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQ---VLLVIVPMIYLII-VLQNYYFA 845
V ++I F+++ +WQ +L+V+ P++ + I V+ + +
Sbjct: 132 SEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRS 191
Query: 846 TAKELMRING----TRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFH 901
+K + G + +L H + G + E + F K + +
Sbjct: 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEV-----ETKRFDKVSNKMRLQGMKMVS 246
Query: 902 SFTAREWLIQRLETLS-AIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFL--VYS 958
+ + + +IQ + +L+ A VL ++ + + AG + S ++L L + +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVM---DSLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 959 VNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAP 1018
VN Q G + + + L + E E + A TG +E ++ Y
Sbjct: 304 VNAQFQRG--MAACQTLFAILDSEQEKDEGKRVIDRA-----TGDLEFRNVTFTYPGREV 356
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLR 1078
LR I G + +VGR+GSGK+T+ S + R + G LR
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 1079 SNLGIIPQDPTLFSGSVRYNLD--PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
+ + ++ Q+ LF+ +V N+ +++ ++I E + ++ I + GL
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD------FINKMDNGL 470
Query: 1137 DSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANC 1196
D+++ ++G S GQ DEAT+++D ++ +Q + N
Sbjct: 471 DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 1197 TVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244
T + +AHR++T+ + ++ + DG +VE +LL Q ++AQL K
Sbjct: 531 TSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL-AQHGVYAQLHK 577
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T IGE GV LSGGQ+QRI +ARAL +D I +LD+ SALD ++ + + + + L K
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI--QAALDELQKN 529
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMG 627
+T L++ H++ + D I+++ G I++ T+ LL + L HK G
Sbjct: 530 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL---HKMQFG 581
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 120/283 (42%), Gaps = 44/283 (15%)
Query: 223 TSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVL 282
+SG ++ V A IG F F+ W QL I +VV LA I ++ + +++
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSW----QLSIILVV------LAPIVSIAIRVVSKR 188
Query: 283 GNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGW 342
S +Q+ + +A+ + LK EVL+ + +E R ++
Sbjct: 189 FRSISKNMQNTMGQVTTSAE-QMLKGHKEVLI------------FGGQEVETKRFDKVSN 235
Query: 343 LKVLQLQKGYYMVLF--WSSPILIGAATLLTCYFLGIPLNPS--------NVFTFLATLR 392
LQ G MV S PI+ A+L + L PS + +++
Sbjct: 236 KMRLQ---GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMI 292
Query: 393 ILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRA--ELEHSIFIKSA 450
L P++ L +V F + + L++ E + + ++V RA +LE ++
Sbjct: 293 ALMRPLKSLTNVNAQFQRGMAACQTLFAILDS-EQEKDEGKRVIDRATGDLE----FRNV 347
Query: 451 DLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
++ + P LRNINL++ + A+ G G+GKST+ + I
Sbjct: 348 TFTYPGREV-PALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 109/528 (20%), Positives = 220/528 (41%), Gaps = 39/528 (7%)
Query: 734 IGMMFLL----LTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVXXX 789
IG+M L S+ + ++ + ++ +L + P++F+D G +LSR+
Sbjct: 72 IGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYD 131
Query: 790 XXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQ---VLLVIVPMIYLIIVLQNYYFAT 846
V ++I F+++ +WQ +L+V+ P++ + I + + F
Sbjct: 132 SEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRN 191
Query: 847 AKELMR-----INGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFH 901
+ M+ + + +L H + G + E + F K + +
Sbjct: 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEV-----ETKRFDKVSNRMRLQGMKMVS 246
Query: 902 SFTAREWLIQRLETLS-AIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFL--VYS 958
+ + + +IQ + +L+ A VL ++ + + AG + S ++L L + +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVM---DSLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 959 VNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAP 1018
VN Q G + + + L + E E + A TG VE ++ Y
Sbjct: 304 VNAQFQRG--MAACQTLFTILDSEQEKDEGKRVIERA-----TGDVEFRNVTFTYPGRDV 356
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLR 1078
LR I G + +VGR+GSGK+T+ S + R + G+ LR
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLR 416
Query: 1079 SNLGIIPQDPTLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
+ + ++ Q+ LF+ +V N+ Q++ ++I E + + + I + GL
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAM------DFINKMDNGL 470
Query: 1137 DSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANC 1196
D+++ ++G S GQ DEAT+++D ++ +Q + N
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530
Query: 1197 TVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244
T + +AHR++T+ + ++ + DG +VE LL + ++AQL K
Sbjct: 531 TSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR-GVYAQLHK 577
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T IGE GV LSGGQ+QRI +ARAL +D I +LD+ SALD ++ + + + + L K
Sbjct: 472 TVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI--QAALDELQKN 529
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+T L++ H++ + D I+++ G I++ T++ LL
Sbjct: 530 RTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL 566
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 119/281 (42%), Gaps = 40/281 (14%)
Query: 223 TSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVL 282
+SG ++ V A IG F F+ W QL I ++V LA I ++ + +++
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSW----QLSIILIV------LAPIVSIAIRVVSKR 188
Query: 283 GNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGW 342
+ +Q+ + +A+ + LK EVL+ + +E R ++
Sbjct: 189 FRNISKNMQNTMGQVTTSAE-QMLKGHKEVLI------------FGGQEVETKRFDKVSN 235
Query: 343 LKVLQLQKGYYMVLF--WSSPILIGAATLLTCYFLGIPLNPS--------NVFTFLATLR 392
LQ G MV S PI+ A+L + L PS + +++
Sbjct: 236 RMRLQ---GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMI 292
Query: 393 ILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADL 452
L P++ L +V F + + L++ E + + ++V RA + + ++
Sbjct: 293 ALMRPLKSLTNVNAQFQRGMAACQTLFTILDS-EQEKDEGKRVIERATGD--VEFRNVTF 349
Query: 453 SWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
++ + P LRNINL++ + A+ G G+GKST+ + I
Sbjct: 350 TYPGRDV-PALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 9/232 (3%)
Query: 1016 NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXY 1075
++ +LR I+ + I G +G GK+T+ S L R +PT G+
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 1076 DLRSNLGIIPQDPTLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
+ RS +G + QD + +G++R NL +TD+++W QVL+ R ++
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW------QVLDLAFARSFVENMP 126
Query: 1134 EGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREF 1193
+ L++ V + G S GQ DEATAS+D+ ++S++Q +
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 1194 ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKE 1245
T + +AHR++T++D + + + G++ + +L+ L+A+ V E
Sbjct: 187 KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH-PLYAKYVSE 237
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
T++GERGV +SGGQ+QR+ +ARA ++ I +LD+ ++LD+++ + + + +L K
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV--QKALDSLMKG 188
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611
+T L++ H++ + D I I G+I + ++ L+ T
Sbjct: 189 RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 17/236 (7%)
Query: 1004 VEIYDLQIRY-RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKX 1062
+E D+ Y + L+ I G +VG TGSGK+T+ L+R + G
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG-DI 76
Query: 1063 XXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYN-----LDPLSQFTDQEIWEVTIPS 1117
+RS +GI+PQD LF+ +++YN LD TD+E+ + T
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA----TDEEVIKAT--- 129
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASI 1177
+ QL + I+ + D++V G S G+ DEAT+S+
Sbjct: 130 ---KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSL 186
Query: 1178 DNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLR 1233
D+ T+ + Q + N T+I +AHR++T+ ++ ++ GK+VE K LL+
Sbjct: 187 DSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
++ LP T +G +G+ LSGG++QRI +AR L +D I + D+ S+LD+KT ++LF +
Sbjct: 138 IEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQK 196
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVN 620
V +T++++ H++ + + +SI+L++ G+I++ T+ LL + E+ ++ N
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 120/257 (46%), Gaps = 17/257 (6%)
Query: 987 ELVQKNSPAPDWPPTG-------KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGR 1039
+L+++ + D P G ++E ++ Y + L+ ++ T G + +VG
Sbjct: 30 DLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGP 88
Query: 1040 TGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNL 1099
+G+GK+T++ LFR + + G LRS++G++PQD LF+ ++ N+
Sbjct: 89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI 148
Query: 1100 --DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXX 1157
++ D EV +Q + + I EG + V + G S G+
Sbjct: 149 RYGRVTAGND----EVEAAAQA---AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI 201
Query: 1158 XXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSM 1217
DEAT+++D + + +Q ++ + AN T I VAHR++TV++ + +L +
Sbjct: 202 ARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVI 261
Query: 1218 SDGKLVEYDEPKKLLRR 1234
DG +VE + LL R
Sbjct: 262 KDGCIVERGRHEALLSR 278
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
P G TQ+GERG+ LSGG+KQR+ +AR + + I LLD+ SALD + +
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235
Query: 568 GALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
+ +T ++V H++ + D IL+I G I++ ++ LL + D+
Sbjct: 236 -VCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 462 TLRNINLEVKPAEKFAICGEVGAGKSTLL 490
TL++++ V P + A+ G GAGKST+L
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTIL 97
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 13/239 (5%)
Query: 1002 GKVEIYDLQIRYRPNAP--LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
G V+ D+ Y PN P VL+G+T T G +VG GSGK+T+ + L L +PTG
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1060 GKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLD-PLSQF-TDQEIWEVTIPS 1117
GK + L + + + Q+P LF S R N+ L++ T +EI V + S
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASI 1177
+ I +G D+ V + G S GQ D+AT+++
Sbjct: 134 GA------HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSAL 187
Query: 1178 DNATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
D +Q + E+A+ TV+ + H+++ + +L + +G + E +L+ R
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 509 PFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA----KTAKFLFTE 564
P G T++GE G LSGGQ+Q + LARAL + + +LD SALDA + + L
Sbjct: 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLL--- 199
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV 619
Y + +TVLL+THQ+ IL + G + + T+ L+ ++ +V
Sbjct: 200 YESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 13/239 (5%)
Query: 1002 GKVEIYDLQIRYRPNAP--LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
G V+ D+ Y PN P VL+G+T T G +VG GSGK+T+ + L L +PTG
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1060 GKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLD-PLSQF-TDQEIWEVTIPS 1117
GK + L + + + Q+P LF S R N+ L++ T +EI V + S
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASI 1177
+ I +G D+ V + G ++GQ D AT+++
Sbjct: 134 GA------HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 1178 DNATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
D +Q + E+A+ TV+ + +++ + +L + +G + E +L+ R
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 509 PFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA----KTAKFLFTE 564
P G T++GE G L+ GQ+Q + LARAL + + +LD+ SALDA + + L
Sbjct: 143 PQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL--- 199
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV 619
Y + +TVLL+T Q+ IL + G + + T+ L+ ++ +V
Sbjct: 200 YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 13/239 (5%)
Query: 1002 GKVEIYDLQIRYRPNAP--LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
G V+ D+ Y PN P VL+G+T T G +VG GSGK+T+ + L L +PTG
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1060 GKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLD-PLSQF-TDQEIWEVTIPS 1117
GK + L + + + Q+P LF S R N+ L++ T +EI V + S
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASI 1177
+ I +G D+ V + G S GQ D AT+++
Sbjct: 134 GA------HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 1178 DNATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
D +Q + E+A+ TV+ + +++ + +L + +G + E +L+ R
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 509 PFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA----KTAKFLFTE 564
P G T++GE G LSGGQ+Q + LARAL + + +LD+ SALDA + + L
Sbjct: 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL--- 199
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV 619
Y + +TVLL+T Q+ IL + G + + T+ L+ ++ +V
Sbjct: 200 YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE--- 564
LP G T++ E G LSGGQ+Q + LARAL + + +LDD SALDA + L E
Sbjct: 140 LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ--LQVEQLL 197
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
Y ++VLL+T + + D IL + GG I + T+ L+
Sbjct: 198 YESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLM 242
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 9/243 (3%)
Query: 1002 GKVEIYDLQIRYRPNAP--LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
G V+ D+ Y PN P LVL+G+T T G +VG GSGK+T+ + L L +PTG
Sbjct: 13 GLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 1060 GKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV 1119
G+ L + + Q+P +F S++ N+ T + E + V
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENI--AYGLTQKPTMEEITAAAV 129
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDN 1179
K I +G D+ V + G+ S GQ D+AT+++D
Sbjct: 130 --KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 187
Query: 1180 ATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDS 1237
+ ++ + E + +V+ + ++ V + +L + G + E ++L+ ++
Sbjct: 188 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGC 247
Query: 1238 LFA 1240
+A
Sbjct: 248 YWA 250
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 66/206 (32%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI-LGELPR-----LQGMDLKMLPFGDLT-- 514
L N++L V + + + G GAGKSTL+ + L E P + G +L L +LT
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 515 --QIG--------------------------------ERGV------------------N 522
QIG +R V N
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 140
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQKQR+ +ARAL + + L D+ SALD T + + ++ ++++ T+LL+T
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE--LLKDINRRLGLTILLIT 198
Query: 580 HQVDFLPAF-DSILLISGGEIIQAAT 604
H++D + D + +IS GE+I+ T
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDT 224
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 27/233 (11%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDL--- 1077
L ++ G GV+G +G+GK+TLI + L PT G +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
R +G+I Q L S + V +P + L+ EV + E L
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFG-------------NVALPLE-LDNTPKDEVKRRVTELLS 126
Query: 1138 SLVVQDG-----ANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQ--NTI 1189
+ + D +N S GQ DEAT+++D AT SIL+ I
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
Query: 1190 RREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241
R T++ + H + V C+ V +S+G+L+E D ++ + AQ
Sbjct: 187 NRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLV 578
+NLSGGQKQR+ +A L +D LD+P S LD + + +F V+ +L K ++LV
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQ--VLESLKNEGKGIILV 196
Query: 579 THQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
TH++++L D IL IS G I +++ + +EF D+
Sbjct: 197 THELEYLDDMDFILHISNGTIDFCGSWEEFV--EREFDDV 234
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 27/227 (11%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKX 1062
++E+ + RY N VL+ + FE G VVG+ GSGKTTL+ L L+ G
Sbjct: 11 RIELNSVSFRY--NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAG--- 65
Query: 1063 XXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNL-DPLSQF---TDQEIWEVTIPSQ 1118
L P DP L +V Y +P SQ T +E ++
Sbjct: 66 ---------------EIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM 110
Query: 1119 VLEKCQLREVIQEKKE--GLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATAS 1176
L++ ++R+ I++ E GL L D N S GQ DE +
Sbjct: 111 GLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSM 170
Query: 1177 IDNATD-SILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKL 1222
+D + I Q + +I V H + + D + +L +S+G +
Sbjct: 171 LDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 66/206 (32%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI-LGELPR-----LQGMDLKMLPFGDLT-- 514
L N++L V + + + G GAGKSTL+ + L E P + G +L L +LT
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 515 --QIG--------------------------------ERGV------------------N 522
QIG +R V N
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQKQR+ +ARAL + + L D SALD T + + ++ ++++ T+LL+T
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLTILLIT 221
Query: 580 HQVDFLPAF-DSILLISGGEIIQAAT 604
H++D + D + +IS GE+I+ T
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDT 247
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 27/233 (11%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDL--- 1077
L ++ G GV+G +G+GK+TLI + L PT G +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
R +G+I Q L S + V +P + L+ EV + E L
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFG-------------NVALPLE-LDNTPKDEVKRRVTELLS 149
Query: 1138 SLVVQDG-----ANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQ--NTI 1189
+ + D +N S GQ D+AT+++D AT SIL+ I
Sbjct: 150 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 1190 RREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241
R T++ + H + V C+ V +S+G+L+E D ++ + AQ
Sbjct: 210 NRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 62/220 (28%)
Query: 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELPR---- 499
I I+S W+ N +L N++L+V+ E F I G GAGK+ L I G +P
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 500 -LQGMDL--------------------------KMLPFG-------------------DL 513
L G D+ K L FG +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 514 TQIGERG-VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT---AKFLFTEYVMGA 569
+ +R + LSGG++QR+ LARAL + I LLD+P SALD +T A+ + + V+
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS--VLHK 175
Query: 570 LSKKTVLLVTH-QVDFLPAFDSILLISGGEIIQAATYDHL 608
+K TVL +TH Q + D I ++ G++IQ + +
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 66/206 (32%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI-LGELPR-----LQGMDLKMLPFGDLT-- 514
L N++L V + + + G GAGKSTL+ + L E P + G +L L +LT
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 515 --QIG--------------------------------ERGV------------------N 522
QIG +R V N
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQKQR+ +ARAL + + L D SALD T + + ++ ++++ T+LL+T
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLTILLIT 221
Query: 580 HQVDFLPAF-DSILLISGGEIIQAAT 604
H+ D + D + +IS GE+I+ T
Sbjct: 222 HEXDVVKRICDCVAVISNGELIEQDT 247
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 90/233 (38%), Gaps = 27/233 (11%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDL--- 1077
L ++ G GV+G +G+GK+TLI + L PT G +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
R +G I Q L S + V +P + L+ EV + E L
Sbjct: 104 RRQIGXIFQHFNLLSSRTVF-------------GNVALPLE-LDNTPKDEVKRRVTELLS 149
Query: 1138 SLVVQDG-----ANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATD-SILQ--NTI 1189
+ + D +N S GQ D+AT+++D AT SIL+ I
Sbjct: 150 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 1190 RREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241
R T++ + H V C+ V +S+G+L+E D ++ + AQ
Sbjct: 210 NRRLG-LTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLV 578
LSGGQ+QR+ +ARAL ++ ++ LLD+P S LDA + E + L K+ T + V
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAE--LKRLQKELGITTVYV 190
Query: 579 TH-QVDFLPAFDSILLISGGEIIQAATYDHL 608
TH Q + L D I +I GEI+Q T D +
Sbjct: 191 THDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L NINL++K E A+ G G+GKSTLL I G
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
L I + G + ++G +GSGK+TL+ + + +PT GK
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 23/121 (19%)
Query: 491 AAILGELPRLQGMD-LKMLPFGDLTQIGERGVN-----LSGGQKQRIQLARALYQDRDIY 544
A+ GE R + ++ LKM ++ ER N LSGGQ+QR+ +ARAL + I
Sbjct: 114 GAMSGEERRKRALECLKM------AELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 545 LLDDPFSALDAKTAKFLFTEYVMGALSK------KTVLLVTHQVDFLPAFDSILLISGGE 598
L D P ALD+KT E +M L K KTV++VTH ++ + I+ + GE
Sbjct: 168 LADQPTGALDSKTG-----EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
Query: 599 I 599
+
Sbjct: 223 V 223
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
L+N+NL +K E +I G G+GKST+L I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK---TAKFLFTEYVMGALSKKTVLLVT 579
LSGGQ+QR+ LARAL +D + LLD+PFS LDA+ +A+ L E V L T+L+V+
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQSRLG-VTLLVVS 198
Query: 580 HQ-VDFLPAFDSILLISGGEIIQAATYDHL 608
H D D + ++ G+++Q + L
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 462 TLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L N+N+ ++ E+F I G GAGK+T + I G
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 1013 YRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
++ + L + E G + G++G +G+GKTT + + L P+ G+
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVT 579
+LSGGQ QR+ +ARAL + I L D+P SALD + + + VM L+ + T+++VT
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS--VMKQLANEGMTMVVVT 195
Query: 580 HQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQ 613
H++ F D +L + GG II+ + L Q
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 230
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 38/232 (16%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXX--XXXXXXXXXYDL 1077
VL+GI G + V+G +GSGK+T + L L + G+ +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV-LEKCQLREVIQEKKEG- 1135
R +G++ Q R+NL P +T+ + + L ++R+ +EK E
Sbjct: 78 REEVGMVFQ---------RFNLFP----------HMTVLNNITLAPMKVRKWPREKAEAK 118
Query: 1136 ----LDSLVVQDGAN-----WSMGQXXXXXXXXXXXXXXXXXXXDEATASID-NATDSIL 1185
LD + ++D A+ S GQ DE T+++D +L
Sbjct: 119 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL 178
Query: 1186 QNTIRREFAN--CTVITVAHRIATVMDC-NMVLSMSDGKLVEYDEPKKLLRR 1234
++ ++ AN T++ V H + + + VL M G ++E +P+ L R
Sbjct: 179 --SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVT 579
+LSGGQ QR+ +ARAL + I L D+P SALD + + + VM L+ + T+++VT
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS--VMKQLANEGMTMVVVT 216
Query: 580 HQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQ 613
H++ F D +L + GG II+ + L Q
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 251
Score = 37.4 bits (85), Expect = 0.056, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 38/232 (16%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXX--XXXXXXXXXXYDL 1077
VL+GI G + V+G +GSGK+T + L L + G+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV-LEKCQLREVIQEKKEG- 1135
R +G++ Q R+NL P +T+ + + L ++R+ +EK E
Sbjct: 99 REEVGMVFQ---------RFNLFP----------HMTVLNNITLAPMKVRKWPREKAEAK 139
Query: 1136 ----LDSLVVQDGA-----NWSMGQXXXXXXXXXXXXXXXXXXXDEATASID-NATDSIL 1185
LD + ++D A + S GQ DE T+++D +L
Sbjct: 140 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL 199
Query: 1186 QNTIRREFAN--CTVITVAHRIATVMDC-NMVLSMSDGKLVEYDEPKKLLRR 1234
++ ++ AN T++ V H + + + VL M G ++E +P+ L R
Sbjct: 200 --SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 517 GERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVL 576
G+ V+LSGGQ+QR+ +ARAL + D+ L D+P SALD + + A KT++
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 577 LVTHQVDFLPAFDS-ILLISGGEIIQAATYDHLLVTSQ 613
+VTH++ F S ++ + G+I + + + Q
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQ 245
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLV 578
LSGGQ+QR+ +ARA+ + D+ L+D+P S LDAK + E + L +K T + V
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE--IKKLQQKLKVTTIYV 199
Query: 579 TH-QVDFLPAFDSILLISGGEIIQAAT 604
TH QV+ + D I +++ G+++Q +
Sbjct: 200 THDQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLV 578
LSGGQ+QR+ +ARA+ + D+ L+D+P S LDAK + E + L +K T + V
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE--IKKLQQKLKVTTIYV 198
Query: 579 TH-QVDFLPAFDSILLISGGEIIQAAT 604
TH QV+ + D I +++ G+++Q +
Sbjct: 199 THDQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 23/121 (19%)
Query: 491 AAILGELPRLQGMD-LKMLPFGDLTQIGERGVN-----LSGGQKQRIQLARALYQDRDIY 544
A+ GE R + ++ LKM ++ ER N LSGGQ+QR+ +ARAL + I
Sbjct: 114 GAMSGEERRKRALECLKM------AELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 545 LLDDPFSALDAKTAKFLFTEYVMGALSK------KTVLLVTHQVDFLPAFDSILLISGGE 598
L D P ALD+KT E +M L K KTV++VTH ++ + I+ + GE
Sbjct: 168 LADQPTWALDSKTG-----EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
Query: 599 I 599
+
Sbjct: 223 V 223
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
L+N+NL +K E +I G G+GKST+L I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTVL 576
LSGGQ+QR+ +ARAL + I L D+P ALD+KT E + L K KTV+
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTG-----EKIXQLLKKLNEEDGKTVV 200
Query: 577 LVTHQVDFLPAFDSILLISGGEI 599
+VTH ++ + I+ + GE+
Sbjct: 201 VVTHDINVARFGERIIYLKDGEV 223
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
L+N+NL +K E +I G G+GKST L I
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII 51
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK---TAKFLFTEYVMGALSKKTVLLVT 579
LSG Q+QR+ LARAL +D + LLD+PFS LDA+ +A+ L E V L T+L+V+
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQSRLG-VTLLVVS 198
Query: 580 HQ-VDFLPAFDSILLISGGEIIQAATYDHL 608
H D D + ++ G+++Q + L
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 462 TLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L N+N+ ++ E+F I G GAGK+T + I G
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 1013 YRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
++ + L + E G + G++G +G+GKTT + + L P+ G+
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL--FTEYVMGALSKKTVLLVTH 580
LSGGQ+QR+ LARAL + L D+PF+A+D + + L F V + +V +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
Query: 581 QVDFLPAFDSILLISGGEIIQAAT 604
Q + L D +L++ G + Q T
Sbjct: 206 QEEALEVADRVLVLHEGNVEQFGT 229
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 23/245 (9%)
Query: 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXX 1074
P +RG++ G +G++G +GSGKTT++ + L PT G
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVT---- 80
Query: 1075 YDL---RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE 1131
DL + N+G++ Q+ LF Y+ + E +P ++ ++RE+++
Sbjct: 81 -DLPPQKRNVGLVFQNYALFQHMTVYDNVSFG------LREKRVPKDEMD-ARVRELLRF 132
Query: 1132 KKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRR 1191
+ L+S + S GQ DE A+ID L+ +R+
Sbjct: 133 MR--LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190
Query: 1192 --EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLF-AQLVKE-- 1245
+ T + V H ++ + VL + +G + ++ P+++ + +LF A + E
Sbjct: 191 VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIGESN 250
Query: 1246 YWSHA 1250
W+ A
Sbjct: 251 VWTRA 255
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 494 LGELPRLQGMDLKMLPFGDLTQIGE----RGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549
L ++PR Q +D ++ +L + E + LSGGQ+QR+ L RA+ + ++L+D+P
Sbjct: 108 LRKVPR-QEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166
Query: 550 FSALDAKTAKFLFTEYVMGALSKK---TVLLVTH-QVDFLPAFDSILLISGGEIIQAATY 605
S LDAK + E + L ++ T + VTH QV+ + D I +++ G + Q +
Sbjct: 167 LSNLDAKLRVRMRAE--LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSP 224
Query: 606 DHL 608
D +
Sbjct: 225 DEV 227
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK---KTVLLVT 579
LSGGQ+QR+ + R L + ++LLD+P S LDA + E + L K +T++ VT
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE--ISRLHKRLGRTMIYVT 191
Query: 580 H-QVDFLPAFDSILLISGGEIIQAA 603
H QV+ + D I+++ G + Q
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK---KTVLLVT 579
LSGGQ+QR+ + R L + ++LLD+P S LDA + E + L K +T++ VT
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE--ISRLHKRLGRTMIYVT 191
Query: 580 H-QVDFLPAFDSILLISGGEIIQAA 603
H QV+ + D I+++ G + Q
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQ+QR+ L RA+ + ++L D+P S LDAK E + L ++ T + VT
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAE--LKKLQRQLGVTTIYVT 200
Query: 580 H-QVDFLPAFDSILLISGGEIIQAATYDHL 608
H QV+ D I + + GE+ Q T D +
Sbjct: 201 HDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK---KTVLLVT 579
LSGGQ+QR+ + R L + ++LLD P S LDA + E + L K +T++ VT
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIE--ISRLHKRLGRTMIYVT 191
Query: 580 H-QVDFLPAFDSILLISGGEIIQAA 603
H QV+ + D I+++ G + Q
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 49/171 (28%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG----------------- 502
N + +N ++ + A+ G+ G GKSTLL +LG +QG
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSS 77
Query: 503 ------------------------------MDLKMLPFGDLTQIGERG-VNLSGGQKQRI 531
+ ++ L + +LT + +R +LSGGQ+Q I
Sbjct: 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI 137
Query: 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTHQ 581
+ARA+ + + LLD+P SALD + + + A S+ TV+ THQ
Sbjct: 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE--YVMGALSKKTVLLVTH 580
LSGGQ+QR+ LARAL + + L D+P S LDA + E ++ L +V +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 581 QVDFLPAFDSILLISGGEIIQAATYDHL 608
Q + + I + + G+++Q T D +
Sbjct: 194 QAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 73/175 (41%), Gaps = 57/175 (32%)
Query: 462 TLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP----------------------- 498
+L NINLEV EK I G G+GK+TLL AI G LP
Sbjct: 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYST 78
Query: 499 --------------------RLQGMD-------LKMLPFGDLTQIGERGV-NLSGGQKQR 530
L+G+D LK L G+ +I R + LS GQ
Sbjct: 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE--EILRRKLYKLSAGQSVL 136
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFL 585
++ + AL +I LD+PF +DA + + + Y+ K +LVTH++D L
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDA-ARRHVISRYIKE--YGKEGILVTHELDML 188
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 23/226 (10%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKX--XXXXXXXXXXXXYDLR 1078
L+GI + G ++G G GK+TL +++P+ G+ LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1079 SNLGIIPQDPT--LFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--KKE 1134
++GI+ QDP LFS SV + D V + L + ++R+ + K+
Sbjct: 84 ESIGIVFQDPDNQLFSASV---------YQDVSFGAVNMK---LPEDEIRKRVDNALKRT 131
Query: 1135 GLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN---TIRR 1191
G++ L + S GQ DE TA +D S + +++
Sbjct: 132 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191
Query: 1192 EFANCTVITVAHRIATV-MDCNMVLSMSDGKLVEYDEPKKLLRRQD 1236
E T+I H I V + C+ V M +G+++ PK++ ++
Sbjct: 192 ELG-ITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LS GQK+R+ +A L + + +LD+P + LD + V + K+ T+++ T
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV--EMQKELGITIIIAT 201
Query: 580 HQVDFLPAF-DSILLISGGEII 600
H +D +P + D++ ++ G +I
Sbjct: 202 HDIDIVPLYCDNVFVMKEGRVI 223
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 60/266 (22%)
Query: 388 LATLRILQEPIRLL---PDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHS 444
LA L L + I ++ P V+G F + K + + I FL+ L++ +++ E+ +
Sbjct: 288 LAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQG-YLKDENVR--FRPYEIRFT 344
Query: 445 IFIKSADLSWEADLLNPTL----RNINLEVKPAE-----KFAICGEVGAGKSTLLAAILG 495
+ D+ E + P L + LEV+P E I G G GK+T + + G
Sbjct: 345 KLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
Query: 496 -ELP--------------------RLQGMDLKML-------------------PFGDLTQ 515
E P +G ++L P G +
Sbjct: 405 VEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG-IID 463
Query: 516 IGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-- 572
+ +R V +LSGG+ QR+ +A L +D DIYLLD+P + LD + + + + + K
Sbjct: 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ-RLAVSRAIRHLMEKNE 522
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGE 598
KT L+V H V + L++ GE
Sbjct: 523 KTALVVEHDVLMIDYVSDRLIVFEGE 548
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH 580
LSGG+ QR+ +A AL + Y D+P S LD + + L V+ L+ K VL+V H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR--QRLKVARVIRRLANEGKAVLVVEH 286
Query: 581 QVDFLPAFDSILLISGGE 598
+ L ++ + GE
Sbjct: 287 DLAVLDYLSDVIHVVYGE 304
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G IG+VG G GKTT + L + EPT GK
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVT 579
+LSGG+ QR+ +A L +D DIYLLD+P + LD + + + + + K KT L+V
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ-RLAVSRAIRHLMEKNEKTALVVE 515
Query: 580 HQVDFLPAFDSILLISGGE 598
H V + L++ GE
Sbjct: 516 HDVLMIDYVSDRLIVFEGE 534
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH 580
LSGG+ QR+ +A AL + Y D+P S LD + + L V+ L+ K VL+V H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR--QRLKVARVIRRLANEGKAVLVVEH 272
Query: 581 QVDFLPAFDSILLISGGE 598
+ L ++ + GE
Sbjct: 273 DLAVLDYLSDVIHVVYGE 290
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G IG+VG G GKTT + L + EPT GK
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 398
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE--YVMGALSKKTVLLVTH 580
LSGG++QR+ LARAL + LLD+P SA+D KT L E +V +L VTH
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTH 185
Query: 581 QVDFLPA---FDSILLISGGEIIQAATYDHLL 609
D + A D + ++ G I++ L
Sbjct: 186 --DLIEAAMLADEVAVMLNGRIVEKGKLKELF 215
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 21/222 (9%)
Query: 1028 FEGGHKIGVV-GRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQ 1086
FE G V+ G TG+GK+ + + +V+P G+ R +G +PQ
Sbjct: 20 FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQ 77
Query: 1087 DPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145
D LF SV N+ + + + R +K G+ L+ + A
Sbjct: 78 DYALFPHLSVYRNI------------AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA 125
Query: 1146 NWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIR---REFANCTVITVA 1202
S G+ DE +++D T +L +R REF + ++ V
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVT 184
Query: 1203 HR-IATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
H I M + V M +G++VE + K+L ++ A+ +
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT-AKFLFT 563
L+M+ + + LSGG KQR+ +A AL D + +LD+P SALD T A +
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQL 196
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAF-DSILLISGGEIIQ 601
+ + K T++ VTH + D + +I GG +++
Sbjct: 197 LKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 41/148 (27%)
Query: 452 LSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-GELPRL---------- 500
L++ A +L L L +K A ++ ICG G GKSTL+ AI G++
Sbjct: 443 LAYGAKIL---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVY 499
Query: 501 --------------------------QGMDLKMLPFGDLTQIGERGVN-LSGGQKQRIQL 533
+ + K++ FG ++ ++ LSGG K ++ L
Sbjct: 500 VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559
Query: 534 ARALYQDRDIYLLDDPFSALDAKTAKFL 561
ARA+ ++ DI LLD+P + LD +L
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTVNVAWL 587
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK------TVL 576
LSGGQK ++ LA +Q + +LD+P + LD + +GALSK V+
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---------LGALSKALKEFEGGVI 952
Query: 577 LVTHQVDF 584
++TH +F
Sbjct: 953 IITHSAEF 960
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGEL 497
P + +IN + + + A+ G GAGKSTL+ + GEL
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Query: 998 WPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057
+P T K +I D+ + C+ +I V+G G+GK+TLI+ L + P
Sbjct: 681 YPGTSKPQITDINFQ-------------CSLSS--RIAVIGPNGAGKSTLINVLTGELLP 725
Query: 1058 TGGK 1061
T G+
Sbjct: 726 TSGE 729
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 60/250 (24%)
Query: 388 LATLRILQEPIRLL---PDVFGAFIEAKVSLDRIANFLEAPELQNSDMQ---------QV 435
LA L L + I ++ P V+G F + K + + I FL L++ +++ +
Sbjct: 218 LAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRG-YLKDENVRFRPYEIKFTKT 276
Query: 436 CSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
R E+E + L D + L E+K E I G G GK+T + + G
Sbjct: 277 GERVEIERETLVTYPRLV--KDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAG 334
Query: 496 -ELPR----------------------------LQGMDLKML-----------PFGDLTQ 515
E P L +D L P G +
Sbjct: 335 VEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG-IID 393
Query: 516 IGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV--MGALSK 572
+ +R VN LSGG+ QR+ +A L +D DIYLLD+P + LD + + + + + ++
Sbjct: 394 LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ-RLAVSRAIRHLXEKNE 452
Query: 573 KTVLLVTHQV 582
KT L+V H V
Sbjct: 453 KTALVVEHDV 462
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 512 DLTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL 570
+L + ER + +LSGG+ QR+ +A AL ++ Y D+P S LD + + L + L
Sbjct: 147 ELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR--QRLNAARAIRRL 204
Query: 571 SK--KTVLLVTHQVDFLPAFDSILLISGGE 598
S+ K+VL+V H + L I+ + GE
Sbjct: 205 SEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G IG+VG G GKTT + L + EPT GK
Sbjct: 312 GEVIGIVGPNGIGKTTFVKXLAGVEEPTEGK 342
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 478 ICGEVGAGKSTLLAAILGE-LPRLQGM---DLKMLPFGDLTQIGERGV-NLSGGQKQRIQ 532
+ GE+ G+S L + + +P+ + M K+L F L+ + +R LSGGQ + ++
Sbjct: 104 LIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163
Query: 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDF-LPAFDSI 591
+ RAL + + ++D P + + A +F + T L++ H++D L D +
Sbjct: 164 IGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHL 223
Query: 592 LLISGGEII 600
++ G+II
Sbjct: 224 YVMFNGQII 232
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ---DRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
++G+ LSGG+ QR++LA L++ R +Y+LD+P + L L +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 572 KKTVLLVTHQVDFLPAFDSILLIS------GGEIIQAAT 604
TVL++ H +D + D I+ + GG+I+ T
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 523 LSGGQKQRIQLARALYQDRD--IYLLDDPFSALDAK-TAKFLFTEYVMGALSKKTVLLVT 579
LSGG+ QRI+LA + +Y+LD+P L + + + T M L T+++V
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG-NTLIVVE 563
Query: 580 HQVDFLPAFDSILLIS------GGEIIQAATYDHLL 609
H D + A D ++ I GGE++ A T + ++
Sbjct: 564 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ---DRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
++G+ LSGG+ QR++LA L++ R +Y+LD+P + L L +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 572 KKTVLLVTHQVDFLPAFDSILLIS------GGEIIQAAT 604
TVL++ H +D + D I+ + GG+I+ T
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 634
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 523 LSGGQKQRIQLARALYQDRD--IYLLDDPFSALDAK-TAKFLFTEYVMGALSKKTVLLVT 579
LSGG+ QRI+LA + +Y+LD+P L + + + T M L T+++V
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG-NTLIVVE 261
Query: 580 HQVDFLPAFDSILLIS------GGEIIQAATYDHLL 609
H D + A D ++ I GGE++ A T + ++
Sbjct: 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ---DRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
++G+ LSGG+ QR++LA L++ R +Y+LD+P + L L +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 572 KKTVLLVTHQVDFLPAFDSILLIS------GGEIIQAAT 604
TVL++ H +D + D I+ + GG+I+ T
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 523 LSGGQKQRIQLARALYQDRD--IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTH 580
LSGG+ QRI+LA + +Y+LD+P L + L T+++V H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 581 QVDFLPAFDSILLIS------GGEIIQAAT 604
D A D ++ I GGE++ A T
Sbjct: 565 DEDTXLAADYLIDIGPGAGIHGGEVVAAGT 594
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 63/204 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG--------------------------- 495
L+ I+L VK E +I G G+GKSTLL ILG
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 496 -----------------ELPRLQGMDLKMLPFGD------------LTQIG------ERG 520
EL L+ + + ML G L+++G +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTH 580
LSGG++QR+ +ARAL + + D+P LD+ K + ++ ++++VTH
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198
Query: 581 QVDFLPAFDSILLISGGEIIQAAT 604
+ + L + G+++ T
Sbjct: 199 ERELAELTHRTLEMKDGKVVGEIT 222
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 18/211 (8%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRS 1079
+L+GI+ + + G + ++G +GSGK+TL+ L L PT GK Y
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK----VFLEGKEVDYTNEK 74
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE----- 1134
L ++ F Y + L+ + V +P +L+ + ++ +E+ E
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALEN-----VIVP--MLKMGKPKKEAKERGEYLLSE 127
Query: 1135 -GLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNA-TDSILQNTIRRE 1192
GL + + S G+ DE T ++D+A T ++ ++
Sbjct: 128 LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 1193 FANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
+++ V H + L M DGK+V
Sbjct: 188 EGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 478 ICGEVGAGKSTLLAAILGE-LPRLQGM---DLKMLPFGDLTQIGERGVN-LSGGQKQRIQ 532
+ GE+ G+S L + + +P+ + M K+L F L+ + +R LSGGQ + ++
Sbjct: 104 LIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163
Query: 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDF-LPAFDSI 591
+ RAL + + ++D+P + + A +F + T L++ H++D L D +
Sbjct: 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHL 223
Query: 592 LLISGGEII 600
++ G+II
Sbjct: 224 YVMFNGQII 232
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1002 GKVEIYDLQIRYRPNAPL---VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT 1058
G++E+ ++ + PL L ++ G + V G TGSGK+TL+ + L+EPT
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1059 GGKXXXXXXXXXXXXXYDLRSNLGIIPQDP 1088
G Y++R N+GI Q P
Sbjct: 63 SGD---VLYDGERKKGYEIRRNIGIAFQYP 89
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582
LSGG+K+R+ +A + + DI +LD+P LD + L KTV+L++H +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 583 D-FLPAFDSILLISGGEIIQAAT-------YDHLLVTSQ 613
+ + D ++++ G+ + T YD TS+
Sbjct: 201 ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSK 239
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L N++L + E + G G+GKSTLL + G
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 57
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDR---DIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
++G+ LSGG+ QRI+LA L + +Y+LD+P + L + L + V +
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 572 KKTVLLVTHQVDFLPAFDSILLISGG 597
TV+ V H++ + A D +L I G
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPG 808
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 523 LSGGQKQRIQLARALYQD--RDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTH 580
LS G+ QR++LA LY + +Y+LD+P + L + L + ++ +V H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 581 QVDFLPAFDSILLIS------GGEIIQAATYDHL--LVTSQEFQDL-VNAHKETMGP 628
+D + D ++ + GGEI+ + + L + SQ Q L + H E P
Sbjct: 440 DLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFADRHTEPHTP 496
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 38/137 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-GELPRL--------------------- 500
L L +K A ++ ICG G GKSTL AI G++
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDIDGTHSD 510
Query: 501 ---------------QGMDLKMLPFGDLTQ-IGERGVNLSGGQKQRIQLARALYQDRDIY 544
+ + K++ FG + I LSGG K ++ LARA+ ++ DI
Sbjct: 511 TSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADIL 570
Query: 545 LLDDPFSALDAKTAKFL 561
LLD+P + LD +L
Sbjct: 571 LLDEPTNHLDTVNVAWL 587
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK------TVL 576
LSGGQK ++ LA +Q + +LD+P + LD + +GALSK V+
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---------LGALSKALKEFEGGVI 952
Query: 577 LVTHQVDF 584
++TH +F
Sbjct: 953 IITHSAEF 960
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGEL 497
P + +IN + + + A+ G GAGKSTL+ + GEL
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Query: 998 WPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057
+P T K +I D+ + C+ +I V+G G+GK+TLI+ L + P
Sbjct: 681 YPGTSKPQITDINFQ-------------CSLSS--RIAVIGPNGAGKSTLINVLTGELLP 725
Query: 1058 TGGK 1061
T G+
Sbjct: 726 TSGE 729
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 74/240 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------------------- 502
+ +++L + E AI G GAGKSTLL + G L G
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 503 -------------------MDLKMLPFG---------------DLTQIGERGVN-LSGGQ 527
+ + P+G D + +R LSGG+
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGE 146
Query: 528 KQRIQLARALYQ-------DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLL 577
+QR+QLAR L Q R ++ LD+P SALD + T ++ L+++ V
Sbjct: 147 QQRVQLARVLAQLWQPQPTPRWLF-LDEPTSALDLYHQQ--HTLRLLRQLTRQEPLAVCC 203
Query: 578 VTHQVDFLPAF-DSILLISGGEIIQAATYDHLL---VTSQEFQ-DL-VNAHKETMGPETF 631
V H ++ + D I+L++ G+++ T + +L +Q +Q DL V+ H E+ P+ +
Sbjct: 204 VLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLGVSRHPESALPQIY 263
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 41/148 (27%)
Query: 452 LSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-GELPRL---------- 500
L++ A +L L L +K A ++ ICG G GKSTL AI G++
Sbjct: 437 LAYGAKIL---LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVY 493
Query: 501 --------------------------QGMDLKMLPFGDLTQ-IGERGVNLSGGQKQRIQL 533
+ + K++ FG + I LSGG K ++ L
Sbjct: 494 VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLAL 553
Query: 534 ARALYQDRDIYLLDDPFSALDAKTAKFL 561
ARA+ ++ DI LLD+P + LD +L
Sbjct: 554 ARAVLRNADILLLDEPTNHLDTVNVAWL 581
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK------TVL 576
LSGGQK ++ LA +Q + +LD+P + LD + +GALSK V+
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---------LGALSKALKEFEGGVI 946
Query: 577 LVTHQVDF 584
++TH +F
Sbjct: 947 IITHSAEF 954
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGEL 497
P + +IN + + + A+ G GAGKSTL+ + GEL
Sbjct: 681 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 717
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Query: 998 WPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057
+P T K +I D+ + C+ +I V+G G+GK+TLI+ L + P
Sbjct: 675 YPGTSKPQITDINFQ-------------CSLSS--RIAVIGPNGAGKSTLINVLTGELLP 719
Query: 1058 TGGK 1061
T G+
Sbjct: 720 TSGE 723
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 478 ICGEVGAGKSTLLAAILGE-LPRLQGM---DLKMLPFGDLTQIGERGVN-LSGGQKQRIQ 532
+ GE+ G+S L + + +P+ + M K+L F L+ + +R LSGGQ + ++
Sbjct: 104 LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163
Query: 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDF-LPAFDSI 591
+ RAL + + ++D+P + + A +F + T L++ H++D L D +
Sbjct: 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHL 223
Query: 592 LLISGGEII 600
++ G+II
Sbjct: 224 YVMFNGQII 232
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALD--AKTAKFLFTEYVMGALSKKTVLLVTH 580
LS G+KQR+ +ARAL + +LD+P + LD A+ + + + + + VTH
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 581 QVDFLPA-FDSILLISGGEIIQAATYDHLLVT 611
++ + A F ILL+ G+ IQ + +L +
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582
LSGG+K+R+ +A + + DI +LD+P LD + L KTV+L++H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 583 D-FLPAFDSILLISGGEIIQAAT-------YDHLLVTSQ 613
+ + D ++++ G+ + T YD TS+
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSK 237
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 1003 KVEIYDLQIRYRPNAPL---VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
++E+ ++ + PL L ++ G + V G TGSGK+TL+ + L+EPT
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1060 GKXXXXXXXXXXXXXYDLRSNLGIIPQDP 1088
G Y++R N+GI Q P
Sbjct: 62 GD---VLYDGERKKGYEIRRNIGIAFQYP 87
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L N++L + E + G G+GKSTLL + G
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ---DRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
++G+ LSGG+ QRI+LA L + R +Y+LD+P L + + L
Sbjct: 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 572 KKTVLLVTHQVDFLPAFDSILLI------SGGEIIQAATYDHL 608
TV+++ H +D + D I+ + GG I+ T + +
Sbjct: 858 GNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 523 LSGGQKQRIQLARALYQDRD--IYLLDDPFSALDAKTAKFLFTEYVMGALSK-----KTV 575
LSGG+ QRI+LA + IY+LD+P L + TE ++ L K TV
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRD-----TERLIKTLKKLRDLGNTV 519
Query: 576 LLVTHQVDFLPAFDSILLI 594
++V H + + D I+ I
Sbjct: 520 IVVEHDEEVIRNADHIIDI 538
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 20/141 (14%)
Query: 466 INLEVKP---AEKFAICGEVGAGKSTLLAAILGEL--PRLQGMDLKMLPFGDLTQIGERG 520
+N+ +KP A KF G + I G+ P+ Q +K L D+ I +
Sbjct: 413 LNVSMKPQKIAPKFP-----GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI--IDQEV 465
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLV 578
+LSGG+ QR+ + AL DIYL+D+P + LD++ + + ++ + + +KKT +V
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-RIICSKVIRRFILHNKKTAFIV 524
Query: 579 THQVDFLPAF---DSILLISG 596
H DF+ A D +++ G
Sbjct: 525 EH--DFIMATYLADKVIVFEG 543
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTH 580
LSGG+ QR + + Q+ D+Y+ D+P S LD K + L ++ +L K V+ V H
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK--QRLNAAQIIRSLLAPTKYVICVEH 279
Query: 581 Q---VDFLPAFDSIL 592
+D+L F I+
Sbjct: 280 DLSVLDYLSDFVCII 294
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 61/205 (29%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI----------------------------L 494
L+ I+ E++ E F + G GAGK+T L I +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 495 GELPR-------LQGMDLKMLPFG-------DLTQIGERGVNLSG--------------G 526
LP +QG++ G ++ ++ ER ++G G
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKG 150
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTH---QVD 583
+++ +ARAL + + +LD+P S LD A+ + + T+L+ +H +V+
Sbjct: 151 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVE 210
Query: 584 FLPAFDSILLISGGEIIQAATYDHL 608
FL D I LI G I++ T + L
Sbjct: 211 FL--CDRIALIHNGTIVETGTVEEL 233
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060
G V + DL R R +L+GI+ E G G++G G+GKTT + + L++P+ G
Sbjct: 14 GAVVVKDL--RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ---DRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
++G+ LSGG+ QR++LA L + R +Y+LD+P + L + L + G +
Sbjct: 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVD 914
Query: 572 K-KTVLLVTHQVDFLPAFDSIL 592
K TV+++ H +D + D I+
Sbjct: 915 KGNTVIVIEHNLDVIKTSDWII 936
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 523 LSGGQKQRIQLARALYQD--RDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTH 580
LSGG+ QRI+LA + +Y+LD+P L + + L T+++V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 581 QVDFLPAFDSILLIS------GGEIIQAATYDHLL 609
D + D I+ I GG I+ + YD LL
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 523 LSGGQKQRIQLARALYQDR------DIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KT 574
LSGG++ I ++ A+ D + +D+ FS+LD + + + + V+ L + K
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS--VLKELERLNKV 337
Query: 575 VLLVTHQVDFLPAFDSILLISGGEIIQ 601
++ +TH +F AFD L I+GG ++
Sbjct: 338 IVFITHDREFSEAFDRKLRITGGVVVN 364
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 10/86 (11%)
Query: 523 LSGGQKQ--RIQLARALYQ----DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KT 574
LSGG++ I LA +L + D + +D+ FS+LD + + + + V+ L + K
Sbjct: 280 LSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS--VLKELERLNKV 337
Query: 575 VLLVTHQVDFLPAFDSILLISGGEII 600
++ +TH +F AFD L I+GG ++
Sbjct: 338 IVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Query: 493 ILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSA 552
I+ L ++ +DLK ++GE LS G +R+QLA L + +IY+LDDP A
Sbjct: 115 IMDALESVEVLDLK-------KKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163
Query: 553 LDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
+D + +K + ++ L +K +++++ +
Sbjct: 164 ID-EDSKHKVLKSILEILKEKGIVIISSR 191
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
K+EI DL + Y + P VL IT T E G+ + G G GKTTL+ + ++P G+
Sbjct: 10 KLEIRDLSVGY--DKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 512 DLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL 570
++T + + N LSGG QR+ +A +L ++ D+Y+ D P S LD + + + + L
Sbjct: 127 NMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR-ERMNMAKAIRELL 185
Query: 571 SKKTVLLVTHQVDFLPAFDSILLISGGE 598
K V++V H + L ++ I GE
Sbjct: 186 KNKYVIVVDHDLIVLDYLTDLIHIIYGE 213
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 512 DLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK 556
+L ++ E VN LSGG+ Q++ +A L ++ D+Y+LD P S LD +
Sbjct: 374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
H + IK +S E + LR ++L+V P E AI G G+GKSTL A + G
Sbjct: 19 HMLSIKDLHVSVEDKAI---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTH 580
LSGGQ+QR LARAL D ++ LLD+PFSALD + + + E ++ AL + K+ + V+H
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI-REDMIAALRANGKSAVFVSH 197
Query: 581 -QVDFLPAFDSILLISGGEIIQAATYDHL 608
+ + L D I ++ G I+Q A+ L
Sbjct: 198 DREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
P L +I+L + P E I G G GK+TLL + G
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1016 NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
N P VL I+ + + G + ++G +G GKTTL+ L +P G+
Sbjct: 16 NTP-VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
LR ++L+V P E AI G G+GKSTL A + G
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 893 DAYASSFFHSFT----------AREWLIQRLETLSA---IVLATSALCTTLLHKGHKGAG 939
D Y ++ FH+F + WL E S ++L T+A+C L H G+
Sbjct: 64 DNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTY 123
Query: 940 YTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEA 985
+ ND N+ C V I++ N + IP +
Sbjct: 124 QINARTELAVRYNDISPLE-NHHCAVAFQILAEPECNIFSNIPPDG 168
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 893 DAYASSFFHSFT----------AREWLIQRLETLSA---IVLATSALCTTLLHKGHKGAG 939
D Y ++ FH+F + WL E S ++L T+A+C L H G+
Sbjct: 64 DNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTY 123
Query: 940 YTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEA 985
+ ND N+ C V I++ N + IP +
Sbjct: 124 QINARTELAVRYNDISPLE-NHHCAVAFQILAEPECNIFSNIPPDG 168
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 893 DAYASSFFHSFT----------AREWLIQRLETLSA---IVLATSALCTTLLHKGHKGAG 939
D Y ++ FH+F + WL E S ++L T+A+C L H G+
Sbjct: 71 DNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTY 130
Query: 940 YTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEA 985
+ ND N+ C V I++ N + IP +
Sbjct: 131 QINARTELAVRYNDISPLE-NHHCAVAFQILAEPECNIFSNIPPDG 175
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 893 DAYASSFFHSFT----------AREWLIQRLETLSA---IVLATSALCTTLLHKGHKGAG 939
D Y ++ FH+F + WL E S ++L T+A+C L H G+
Sbjct: 67 DNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTY 126
Query: 940 YTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEA 985
+ ND N+ C V I++ N + IP +
Sbjct: 127 QINARTELAVRYNDISPLE-NHHCAVAFQILAEPECNIFSNIPPDG 171
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 893 DAYASSFFHSFT----------AREWLIQRLETLSA---IVLATSALCTTLLHKGHKGAG 939
D Y ++ FH+F + WL E S ++L T+A+C L H G+
Sbjct: 244 DNYRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTY 303
Query: 940 YTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEA 985
+ ND N+ C V I++ N + IP +
Sbjct: 304 QINARTELAVRYNDISPLE-NHHCAVAFQILAEPECNIFSNIPPDG 348
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ-------DRDIYLLDDPFSALDAKTAKFLFTEYVM 567
++G LSGG+ QR++LA + Q + LLD P ++LD L + ++
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSAL--DKIL 176
Query: 568 GALSKKTVLLVTHQVDF---LPAFDSILLISGGEIIQAATYDHLLV 610
ALS++ + +V D L L+ GG+++ + + +L
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+E+ L + Y A ++GI G + ++G G+GKTT +SA+ LV GK
Sbjct: 7 LEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ-------DRDIYLLDDPFSALDAKTAKFLFTEYVM 567
++G LSGG+ QR++LA + Q + LLD P +LD L + ++
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSAL--DKIL 176
Query: 568 GALSKKTVLLVTHQVDF---LPAFDSILLISGGEIIQAATYDHLLV 610
ALS++ + +V D L L+ GG+++ + + +L
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ-------DRDIYLLDDPFSALDAKTAKFLFTEYVM 567
++G LSGG+ QR++LA + Q + LLD+P ++LD L + ++
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKIL 176
Query: 568 GALSKKTVLLVTHQVDF---LPAFDSILLISGGEIIQAATYDHLLV 610
ALS++ + +V D L L+ GG+ + + + +L
Sbjct: 177 SALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 523 LSGGQKQRIQLARALYQDR------DIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KT 574
LSGG++ I ++ A+ D + +D+ FS+L + + + + V+ L + K
Sbjct: 297 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEKIAS--VLKELERLNKV 354
Query: 575 VLLVTHQVDFLPAFDSILLISGGEIIQ 601
++ +T +F AFD L I+GG ++
Sbjct: 355 IVFITCDREFSEAFDRKLRITGGVVVN 381
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ-------DRDIYLLDDPFSALDAKTAKFLFTEYVM 567
++G LSGG+ QR++LA + Q + LLD+P ++LD L + ++
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKIL 176
Query: 568 GALSKKTVLLVTHQVDF---LPAFDSILLISGGEIIQAATYDHLLV 610
AL ++ + +V D L L+ GG+ + + + +L
Sbjct: 177 SALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|2YHY|A Chain A, Structure Of N-Acetylmannosamine Kinase In Complex With N-
Acetylmannosamine And Adp
pdb|2YI1|A Chain A, Crystal Structure Of N-Acetylmannosamine Kinase In Complex
With N-Acetyl Mannosamine 6-Phosphate And Adp
Length = 343
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 125 HWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKY-----EIYSLAISLFLVKC 179
H +++ F G + +++ G L+ I + +GEI+ KY + Y I+L L C
Sbjct: 20 HMENLYFQGTLS---ALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMC 76
Query: 180 VESLA 184
VE+ A
Sbjct: 77 VEAAA 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,842,555
Number of Sequences: 62578
Number of extensions: 1263907
Number of successful extensions: 3801
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3391
Number of HSP's gapped (non-prelim): 364
length of query: 1255
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1145
effective length of database: 8,089,757
effective search space: 9262771765
effective search space used: 9262771765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)