BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000846
(1255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/1268 (36%), Positives = 746/1268 (58%), Gaps = 55/1268 (4%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDY---GNPSSSSLSNDTVDK- 62
+FRYA D+L ML GT+ +I G+ PLM+ + + + + GN S +S + DK
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 63 ----------YTLRLLYVAIGVG--LSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVG 110
T Y IG G + A+++ W A RQ ++R ++ +++ QE+G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 111 FFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYXXXXXXXXXXXXXXXWRLSL 170
+FD + G T +++D + I I +KI W+L+L
Sbjct: 158 WFDVHDVGELNT-----RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTL 212
Query: 171 AALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIR 230
L ++ + + ++ K++ K + +Y AG +AE+ +++IRTV ++ + + L R
Sbjct: 213 VILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELER 272
Query: 231 FSNALQKTMELGIKQGFIKGLLMGS-MGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGV 289
++N L++ LGIK+ + MG+ +IY +A W G+ LV K G +
Sbjct: 273 YNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFF 332
Query: 290 SIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRD 349
S+++G SV A PN+ A A+ AA +F+++D P+ID+ K G ++G +EF++
Sbjct: 333 SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKN 392
Query: 350 VYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGY 409
++F YPSR + +L+GLNL+V + TT+ L+QR YDP++G V +DG
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
IR +++++LR +G+V+QEPVLFAT+I ENI +G++ +MD++ A K ANA+DFI KL
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
P ++T VG+ G Q+SGGQKQRIAIARAL+R+PKILLLDEATSALD +SE +VQ A+DK
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 530 SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASE 589
+GRTT++IAHRLST+R A++I G +VE G+H+ELM E G Y+++V Q +E
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR--EKGIYFKLVMTQTAGNE 630
Query: 590 NDTSNDTFNDFSHQMDAINLYKRTIXXXXXXXXXXXXXXXXLNPFSPALSVGTPYSYTIQ 649
+ N+ ++D +++ + + S S+ P+ +
Sbjct: 631 IELGNEACKS-KDEIDNLDMSSKD------------SGSSLIRRRSTRKSICGPHDQDRK 677
Query: 650 YDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSL 709
+ +L + + +S+ WR+LK+N EW ++G +I +G +QP + +
Sbjct: 678 LSTKE-ALDEDVPPASF-----WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 710 ISIYFRTDKSEIKSKSRTL-SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGK 768
+ ++ E + ++ L SL FL + +++FI+ LQ ++F GE LTKR+R +
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 769 LMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSW 828
++ ++ WFD NT+ A+ RLA +A V+ G R++++ Q I I+ L+ W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 829 RLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKE---GSQLASEAVINHRTITAFSS 885
+LTL+++A+ P++ + V MK ++G+A K +KE ++A+EA+ N RT+ + +
Sbjct: 852 QLTLLLLAIVPIIA---IAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 886 QKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPE 945
+++ ++ ++L+ P ++K + GI +Q S A A+ +G L+TQ+L+T E
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFE 968
Query: 946 HLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQM 1005
++ F ++F A + + S D +K + + + I+++ EID S QG +
Sbjct: 969 NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK-PNML 1027
Query: 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
G ++ V F YPTRP +L+GLSL+++ G+T+ALVG SGCGKST++ LLERFYDP+
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARES--EIKKAAVL 1123
GSVF+D ++I+ N++ LR+ + +VSQEP LF +I ENIAYG S EI +AA
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKE 1147
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
AN H+FI + D Y+T G++G QLSGGQKQRIA+ARA+++ P ILLLDEATSALD+ SE
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE 1207
Query: 1184 SLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+VQEAL+K GRTC+V+AHRLSTIQ +D I VI+NG+V E G+H +L L++ G Y+S
Sbjct: 1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL--LAQKGIYFS 1265
Query: 1244 LIKPQGGS 1251
++ Q G+
Sbjct: 1266 MVSVQAGA 1273
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/1268 (36%), Positives = 745/1268 (58%), Gaps = 55/1268 (4%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVLSFVINDY---GNPSSSSLSNDTVDK- 62
+FRYA D+L ML GT+ +I G+ PLM+ + + + + GN S +S + DK
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 63 ----------YTLRLLYVAIGVG--LSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVG 110
T Y IG G + A+++ W A RQ ++R ++ +++ QE+G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 111 FFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYXXXXXXXXXXXXXXXWRLSL 170
+FD + G T +++D + I I +KI W+L+L
Sbjct: 158 WFDVHDVGELNT-----RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTL 212
Query: 171 AALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIR 230
L ++ + + ++ K++ K + +Y AG +AE+ +++IRTV ++ + + L R
Sbjct: 213 VILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELER 272
Query: 231 FSNALQKTMELGIKQGFIKGLLMGS-MGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGV 289
++N L++ LGIK+ + MG+ +IY +A W G+ LV K G +
Sbjct: 273 YNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFF 332
Query: 290 SIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRD 349
S+++G SV A PN+ A A+ AA +F+++D P+ID+ K G ++G +EF++
Sbjct: 333 SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKN 392
Query: 350 VYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGY 409
++F YPSR + +L+GLNL+V + TT+ L+QR YDP++G V +DG
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKL 469
IR +++++LR +G+V+QEPVLFAT+I ENI +G++ +MD++ A K ANA+DFI KL
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 470 PDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV 529
P ++T VG+ G Q+SGGQKQRIAIARAL+R+PKILLLDEATSALD +SE +VQ A+DK
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 530 SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASE 589
+GRTT++IAHRLST+R A++I G +VE G+H+ELM E G Y+++V Q +E
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR--EKGIYFKLVMTQTAGNE 630
Query: 590 NDTSNDTFNDFSHQMDAINLYKRTIXXXXXXXXXXXXXXXXLNPFSPALSVGTPYSYTIQ 649
+ N+ ++D +++ + + S S+ P+ +
Sbjct: 631 IELGNEACKS-KDEIDNLDMSSKD------------SGSSLIRRRSTRKSICGPHDQDRK 677
Query: 650 YDPDDDSLGDRIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSL 709
+ +L + + +S+ WR+LK+N EW ++G +I +G +QP + +
Sbjct: 678 LSTKE-ALDEDVPPASF-----WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 710 ISIYFRTDKSEIKSKSRTL-SLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGK 768
+ ++ E + ++ L SL FL + +++FI+ LQ ++F GE LTKR+R +
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 769 LMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSW 828
++ ++ WFD NT+ A+ RLA +A V+ G R++++ Q I I+ L+ W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 829 RLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKE---GSQLASEAVINHRTITAFSS 885
+LTL+++A+ P++ + V MK ++G+A K +KE ++A+EA+ N RT+ + +
Sbjct: 852 QLTLLLLAIVPIIA---IAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 886 QKRILGLFKETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPE 945
+++ ++ ++L+ P ++K + GI +Q S A + +G L+TQ+L+T E
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFE 968
Query: 946 HLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQM 1005
++ F ++F A + + S D +K + + + I+++ EID S QG +
Sbjct: 969 NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK-PNML 1027
Query: 1006 RGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
G ++ V F YPTRP +L+GLSL+++ G+T+ALVG SGCGKST++ LLERFYDP+
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARES--EIKKAAVL 1123
GSVF+D ++I+ N++ LR+ + +VSQEP LF +I ENIAYG S EI +AA
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKE 1147
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
AN H+FI + D Y+T G++G QLSGGQKQRIA+ARA+++ P ILLLDEATSALD+ SE
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE 1207
Query: 1184 SLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+VQEAL+K GRTC+V+AHRLSTIQ +D I VI+NG+V E G+H +L L++ G Y+S
Sbjct: 1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL--LAQKGIYFS 1265
Query: 1244 LIKPQGGS 1251
++ Q G+
Sbjct: 1266 MVSVQAGA 1273
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/1283 (35%), Positives = 707/1283 (55%), Gaps = 72/1283 (5%)
Query: 7 LFRYADGKDKLLMLFGTIGSIGDGMQYPLMVFVL----------SFVINDYGN---PSSS 53
L+RY +KLL+ GT+ ++ G PLM + VIN+ G+ P+
Sbjct: 65 LYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQ 124
Query: 54 SLSNDTVDKYTLRLL--YVAIGVGLSAF--VEGLCWTRTAERQTSRMRMEYLKSVLRQEV 109
+ + + + ++ Y A+ VG+ A + C+ AE+ +R+R E++KS+LRQE+
Sbjct: 125 NYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEI 184
Query: 110 GFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNTLAYXXXXXXXXXXXXXXXWRLS 169
+FDT G+ + + + ++ ++ +KI Y W+L+
Sbjct: 185 SWFDTNHSGT-----LATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLT 239
Query: 170 LAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLI 229
L L +T + + G K M ++ Y AG + E+ +SSIRTV S L
Sbjct: 240 LVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELE 299
Query: 230 RFSNALQKTMELGIKQGFIKGLLMGSM-GMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAG 288
R+S A+++ + G+ +G G+ G+M ++ +A ++G V + G +
Sbjct: 300 RYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTF 359
Query: 289 VSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFR 348
S++MG +++ A P L + A+ AA+ I+E++DR P ID+ K G+ ++G+I
Sbjct: 360 SSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVE 419
Query: 349 DVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDG 408
+V+F YPSRPD +L+G+NLRV A T I+LL R+YD ++G++ +DG
Sbjct: 420 NVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479
Query: 409 YKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITK 468
+R ++L++LR + +V+QEP LF +I ENI GK+G + +++++A K ANA FI
Sbjct: 480 VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKT 539
Query: 469 LPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK 528
LP+GY T VG G Q+SGGQKQRIAIARAL+R+PKILLLDEATSALDA+SE IVQ+A+DK
Sbjct: 540 LPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599
Query: 529 VSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMAS 588
+KGRTT+IIAHRLSTIR A+LI+ K G+VVE G H LM + G YY +V Q
Sbjct: 600 AAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM--AQQGLYYDLVTAQTFTD 657
Query: 589 ENDTSNDTFNDFSHQMDAINLYKRTIXXXXXXXXXXXXXXXXLNPFSPALSVGTPYSYTI 648
D++ + FS + N R +N + ++G +I
Sbjct: 658 AVDSAAE--GKFSRE----NSVARQTSEHEGLSRQASEMDDIMNRVRSS-TIG-----SI 705
Query: 649 QYDPDDDSLGDRIDQSSYATPSQ------------WRLLKINMPEWGSALLGCIASIGSG 696
P D +RI + + + Q + +L P S +G + G
Sbjct: 706 TNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGG 765
Query: 697 AVQPINAYCVGSLISIYFRTDKSEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEK 756
+ P + S +++ F + ++ S+ +L FL +A I S L + + E
Sbjct: 766 FIYPTYSVFFTSFMNV-FAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASES 824
Query: 757 LTKRVREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGS 816
LT+ +R KL +++ IG+FD N S I RLAT+ +R+ + R S ++ +
Sbjct: 825 LTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSM 884
Query: 817 VFSYIVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKE---GSQLASEA 873
V + W++ L++IA+ P+V Y R + GK K+ E ++A EA
Sbjct: 885 VAGIGLAFFYGWQMALLIIAILPIVAFGQYLRG---RRFTGKNVKSASEFADSGKIAIEA 941
Query: 874 VINHRTITAFSSQKRILGLFKETLRGPKEESLKHSWYSGI--GLFSSQFF--NTASTALA 929
+ N RT+ A + + F E L P +E++K ++ G+ G SS + NT A
Sbjct: 942 IENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTC----A 997
Query: 930 YWYGGRLLTQELIT--PEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDR 987
Y G L+ + T P + + + + + A S + +K + A +F +L +
Sbjct: 998 YRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRK 1057
Query: 988 RSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSG 1047
S+ID S G K+++ G++ KNV FAYP RP+ ILKGLS +E G+T+ALVG SG
Sbjct: 1058 ISKIDSLSLAGE--KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSG 1115
Query: 1048 CGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAY 1107
CGKST++ LLERFYD L G +F+D +I+ N + RS IA+VSQEPTLF +I ENI Y
Sbjct: 1116 CGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIY 1175
Query: 1108 G--KADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKN 1165
G + +++++AA LAN H FI+ + +G++T G+RG QLSGGQKQRIA+ARA+++N
Sbjct: 1176 GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN 1235
Query: 1166 PSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVE 1225
P ILLLDEATSALD+ SE +VQEAL++ GRTC+V+AHRL+T+ +D IAV+ NG ++E
Sbjct: 1236 PKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIE 1295
Query: 1226 QGSHNELVALSRGGAYYSLIKPQ 1248
+G+H +L +S GAYY L + Q
Sbjct: 1296 KGTHTQL--MSEKGAYYKLTQKQ 1316
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 292 bits (747), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 171/514 (33%), Positives = 286/514 (55%), Gaps = 22/514 (4%)
Query: 88 TAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNT 147
+ +R +R+R S+LRQEV FFD G ++++ +S+D+ + ++ E +S+
Sbjct: 89 SGQRIVNRLRTSLFSSILRQEVAFFDKTRTG-----ELINRLSSDTALLGRSVTENLSDG 143
Query: 148 LAYXXXXXXXXXXXXXXXWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGI 207
L L+ L + + +++G+ + + +S A +
Sbjct: 144 LRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQL 203
Query: 208 AEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGM------IYV 261
AE+ + ++RTV ++ E + ++++ + M+L K+ F + G+ G+ + V
Sbjct: 204 AEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSV 263
Query: 262 GWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEM 321
+ +GS +T ++ V I +GGLS + + + A R++E+
Sbjct: 264 LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF-----YSELMKGLGAGGRLWEL 318
Query: 322 VDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXX 381
++R P + ++ + +G +EF++V+F YP+RP+ + Q +L +P+
Sbjct: 319 LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 378
Query: 382 XXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENI 441
T ++LL R YDP G + LDG+ IR+L+ WLRS++G V+QEP+LF+ SI ENI
Sbjct: 379 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 438
Query: 442 LFGKDGAS---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498
+G D S +++ A+ ANA FI P G+ T VG+ G +SGGQKQRIAIARAL
Sbjct: 439 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498
Query: 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGK 558
+++PKILLLDEATSALDA++E +VQEA+D++ GRT L+IAHRLSTI+ AN++ VL GK
Sbjct: 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGK 558
Query: 559 VVESGSHNELMNRGEGGEYYQMVELQQM--ASEN 590
+ E G H EL+++ G Y +++ Q A+EN
Sbjct: 559 ITEYGKHEELLSK-PNGIYRKLMNKQSFISAAEN 591
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 198/593 (33%), Positives = 312/593 (52%), Gaps = 27/593 (4%)
Query: 669 PSQWRLLKINMPEWGSALLGCIASIGSGAVQPINA-YCVGSLISIYFRTDKSEIKSKSRT 727
P +LL + PE L + + +V ++A + +G +I + + +
Sbjct: 5 PEARKLLGLAYPER-RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTR 63
Query: 728 LSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAI 787
L L V + ++ ++ Y G+++ R+R L ++ E+ +FD+ + +
Sbjct: 64 LCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGEL 121
Query: 788 CARLATEANVV-RSL---VGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPL-VI 842
RL+++ ++ RS+ + D + QA G + V L+ T V+ V P+ +I
Sbjct: 122 INRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLA---TFVLSVVPPVSII 178
Query: 843 GSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKE 902
Y R ++ + + + + +QLA E + N RT+ AF + + + + +
Sbjct: 179 AVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQ 236
Query: 903 ESLKHSWYSGIGLFSSQFFNTASTALAYWY-GGRLLTQELITPEHLFQAFLILLFTAYVI 961
+ K + ++ G F + + L+ Y GG L+ +T L + + I
Sbjct: 237 LARKEA-FARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISI 295
Query: 962 AEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDI---KRQMRGRIELKNVFFAY 1018
S S++ KG A ++ +L+R +P P + ++ +G +E KNV FAY
Sbjct: 296 GGLSSFYSELMKGLGAGGRLWELLER----EPKLPFNEGVILNEKSFQGALEFKNVHFAY 351
Query: 1019 PTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNY 1078
P RP+ I + SL I +G ALVG SG GKST++ LL R YDP G++ +D DIR
Sbjct: 352 PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQL 411
Query: 1079 NLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARE---SEIKKAAVLANAHEFISGMKD 1135
N LRS I VSQEP LF+ +I ENIAYG D EI++ A +ANA FI
Sbjct: 412 NPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQ 471
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
G++T GE+GV LSGGQKQRIA+ARA+LKNP ILLLDEATSALD+ +E LVQEAL+++M
Sbjct: 472 GFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 531
Query: 1196 GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
GRT +V+AHRLSTI+ ++ +AV+ G++ E G H EL++ G Y L+ Q
Sbjct: 532 GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS-KPNGIYRKLMNKQ 583
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 289 bits (740), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 168/510 (32%), Positives = 282/510 (55%), Gaps = 20/510 (3%)
Query: 88 TAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICEKISNT 147
+ +R +R+R S+LRQEV FFD G ++++ +S+D+ + ++ E +S+
Sbjct: 120 SGQRIVNRLRTSLFSSILRQEVAFFDKTRTG-----ELINRLSSDTALLGRSVTENLSDG 174
Query: 148 LAYXXXXXXXXXXXXXXXWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYGVAGGI 207
L L+ L + + +++G+ + + +S A +
Sbjct: 175 LRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQL 234
Query: 208 AEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGM------IYV 261
AE+ + ++RTV ++ E + ++++ + M+L K+ F + G+ G+ + V
Sbjct: 235 AEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSV 294
Query: 262 GWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEM 321
+ +GS +T ++ V I +GGLS + + + A R++E+
Sbjct: 295 LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF-----YSELMKGLGAGGRLWEL 349
Query: 322 VDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXX 381
++R P + ++ + +G +EF++V+F YP+RP+ + Q +L +P+
Sbjct: 350 LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 409
Query: 382 XXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENI 441
T ++LL R YDP G + LDG+ IR+L+ WLRS++G V+QEP+LF+ SI ENI
Sbjct: 410 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 469
Query: 442 LFGKDGAS---MDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARAL 498
+G D S +++ A+ ANA FI P G+ T VG+ G +SGGQKQRIAIARAL
Sbjct: 470 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 529
Query: 499 IRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGK 558
+++PKILLLDEATSALDA++E +VQEA+D++ GRT L+IAH LSTI+ AN++ VL GK
Sbjct: 530 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGK 589
Query: 559 VVESGSHNELMNRGEGGEYYQMVELQQMAS 588
+ E G H EL+++ G Y +++ Q S
Sbjct: 590 ITEYGKHEELLSK-PNGIYRKLMNKQSFIS 618
Score = 286 bits (733), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 198/602 (32%), Positives = 315/602 (52%), Gaps = 27/602 (4%)
Query: 660 RIDQSSYATPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINA-YCVGSLISIYFRTDK 718
R+ ++ P +LL + PE L + + +V ++A + +G +I + +
Sbjct: 27 RLRPAAAGLPEARKLLGLAYPER-RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPT 85
Query: 719 SEIKSKSRTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFD 778
+ L L V + ++ ++ Y G+++ R+R L ++ E+ +FD
Sbjct: 86 VDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD 145
Query: 779 QEDNTSAAICARLATEANVV-RSL---VGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVM 834
+ + + RL+++ ++ RS+ + D + QA G + V L+ T V+
Sbjct: 146 K--TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLA---TFVL 200
Query: 835 IAVQPL-VIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLF 893
V P+ +I Y R ++ + + + + +QLA E + N RT+ AF + + +
Sbjct: 201 SVVPPVSIIAVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 258
Query: 894 KETLRGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWY-GGRLLTQELITPEHLFQAFL 952
+ + + K + ++ G F + + L+ Y GG L+ +T L +
Sbjct: 259 ASKVDHVMQLARKEA-FARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLM 317
Query: 953 ILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDI---KRQMRGRI 1009
+ I S S++ KG A ++ +L+R +P P + ++ +G +
Sbjct: 318 YAFWVGISIGGLSSFYSELMKGLGAGGRLWELLER----EPKLPFNEGVILNEKSFQGAL 373
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
E KNV FAYP RP+ I + SL I +G ALVG SG GKST++ LL R YDP G++
Sbjct: 374 EFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 433
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARE---SEIKKAAVLANA 1126
+D DIR N LRS I VSQEP LF+ +I ENIAYG D EI++ A +ANA
Sbjct: 434 LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANA 493
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
FI G++T GE+GV LSGGQKQRIA+ARA+LKNP ILLLDEATSALD+ +E LV
Sbjct: 494 VAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV 553
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIK 1246
QEAL+++M GRT +V+AH LSTI+ ++ +AV+ G++ E G H EL++ G Y L+
Sbjct: 554 QEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS-KPNGIYRKLMN 612
Query: 1247 PQ 1248
Q
Sbjct: 613 KQ 614
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 282 bits (721), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 175/525 (33%), Positives = 293/525 (55%), Gaps = 12/525 (2%)
Query: 728 LSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAI 787
+ L +G+ +L I+S + Y S + K+ +R +L G +M + +FD++ ++ +
Sbjct: 67 MPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ--STGTL 124
Query: 788 CARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYS 847
+R+ ++ V S + +V+ + +I+ SW+L++++I + P+V +
Sbjct: 125 LSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRV 184
Query: 848 RNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKH 907
+ ++++ + + + A + + H+ + F Q+ F + + + +K
Sbjct: 185 VSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKM 244
Query: 908 SWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSM 967
S I Q + + A + + +T + F ++ + ++
Sbjct: 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNV 304
Query: 968 TSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMIL 1027
+ +G A +++F ILD E D +G+ + + G +E +NV F YP R D L
Sbjct: 305 NAQFQRGMAACQTLFTILDSEQEKD----EGKRVIERATGDVEFRNVTFTYPGR-DVPAL 359
Query: 1028 KGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087
+ ++LKI AGKTVALVG+SG GKSTI L+ RFYD +G + MD D+R Y L LR+ +
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQV 419
Query: 1088 ALVSQEPTLFAGTIRENIAYGKAD--ARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
ALVSQ LF T+ NIAY + + +RE +I++AA +A A +FI+ M +G DT GE G
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEQYSRE-QIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 1146 VQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHR 1205
V LSGGQ+QRIA+ARA+L++ IL+LDEATSALD+ SE +Q AL+++ RT +V+AHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 1206 LSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250
LSTI+K+D I V+++G +VE+G+HN+L L G Y L K Q G
Sbjct: 539 LSTIEKADEIVVVEDGVIVERGTHNDL--LEHRGVYAQLHKMQFG 581
Score = 226 bits (577), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 159/518 (30%), Positives = 261/518 (50%), Gaps = 25/518 (4%)
Query: 75 GLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSN 134
G++++V C + + + MR ++ V FFD Q G+ ++S I+ DS
Sbjct: 79 GITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGT-----LLSRITYDSE 133
Query: 135 SIQVAICEKISNTLAYXXXXXXXXXXXXXXXWRLSLAALPLTLMFIVPGLLFGKLMMGVI 194
+ + + + W+LS+ + L + + + K +
Sbjct: 134 QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNIS 193
Query: 195 MKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGL--- 251
M + G AEQ + + V + + RF + G+K +
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDP 253
Query: 252 ---LMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAI 308
L+ S+ + AF + S+ G+I V S+I + L +L N+ A
Sbjct: 254 IIQLIASLAL-----AFVLYAASFPSVMDSLTAGTITVVFSSMI-ALMRPLKSLTNVNAQ 307
Query: 309 TEAKVAATR-IFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLN 367
+ +AA + +F ++D D+ + + G++EFR+V F YP R D L+ +N
Sbjct: 308 FQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNIN 363
Query: 368 LRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVN 427
L++PA T +L+ RFYD EGE+L+DG+ +R L LR+Q+ LV+
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVS 423
Query: 428 QEPVLFATSITENILFGK-DGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486
Q LF ++ NI + + + S + + AA+ A A DFI K+ +G +T +G+ G +SG
Sbjct: 424 QNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR 546
GQ+QRIAIARAL+RD IL+LDEATSALD +SER +Q A+D++ K RT+L+IAHRLSTI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 547 TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
A+ I+V++ G +VE G+HN+L+ G Y Q+ ++Q
Sbjct: 544 KADEIVVVEDGVIVERGTHNDLLE--HRGVYAQLHKMQ 579
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 280 bits (717), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 174/525 (33%), Positives = 296/525 (56%), Gaps = 12/525 (2%)
Query: 728 LSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAI 787
+ L +G+ +L I+S + Y S + K+ +R +L G +M + +FD++ ++ +
Sbjct: 67 MPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ--STGTL 124
Query: 788 CARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYS 847
+R+ ++ V S + +V+ + +I+ SW+L+++++ + P+V +
Sbjct: 125 LSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRV 184
Query: 848 RNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGPKEESLKH 907
+ +S++ + + + A + + H+ + F Q+ F + + + +K
Sbjct: 185 VSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 244
Query: 908 SWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFTAYVIAEAGSM 967
S I Q + + A + + +T + F ++ + ++
Sbjct: 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNV 304
Query: 968 TSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMIL 1027
+ +G A +++FAILD E D +G+ + + G +E +NV F YP R + L
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQEKD----EGKRVIDRATGDLEFRNVTFTYPGR-EVPAL 359
Query: 1028 KGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087
+ ++LKI AGKTVALVG+SG GKSTI L+ RFYD +G + MD D+R Y L LR+ +
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419
Query: 1088 ALVSQEPTLFAGTIRENIAYGKAD--ARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
ALVSQ LF T+ NIAY + + +RE +I++AA +A A +FI+ M +G DT GE G
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYSRE-QIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 1146 VQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHR 1205
V LSGGQ+QRIA+ARA+L++ IL+LDEATSALD+ SE +Q AL+++ RT +V+AHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 1206 LSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250
LSTI+++D I V+++G +VE+G+H+EL L++ G Y L K Q G
Sbjct: 539 LSTIEQADEIVVVEDGIIVERGTHSEL--LAQHGVYAQLHKMQFG 581
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 157/518 (30%), Positives = 261/518 (50%), Gaps = 25/518 (4%)
Query: 75 GLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSN 134
G+++++ C + + + MR ++ V FFD Q G+ ++S I+ DS
Sbjct: 79 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGT-----LLSRITYDSE 133
Query: 135 SIQVAICEKISNTLAYXXXXXXXXXXXXXXXWRLSLAALPLTLMFIVPGLLFGKLMMGVI 194
+ + + + W+LS+ + L + + + K +
Sbjct: 134 QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193
Query: 195 MKMIESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGL--- 251
M + G AEQ + + V + + RF K G+K +
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDP 253
Query: 252 ---LMGSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAI 308
L+ S+ + AF + S+ G+I V S+I + L +L N+ A
Sbjct: 254 IIQLIASLAL-----AFVLYAASFPSVMDSLTAGTITVVFSSMI-ALMRPLKSLTNVNAQ 307
Query: 309 TEAKVAATR-IFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLN 367
+ +AA + +F ++D D+ + + G++EFR+V F YP R + L+ +N
Sbjct: 308 FQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNIN 363
Query: 368 LRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVN 427
L++PA T +L+ RFYD EG +L+DG+ +R L LR+Q+ LV+
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423
Query: 428 QEPVLFATSITENILFGK-DGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSG 486
Q LF ++ NI + + + S + + AA+ A A DFI K+ +G +T +G+ G +SG
Sbjct: 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483
Query: 487 GQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIR 546
GQ+QRIAIARAL+RD IL+LDEATSALD +SER +Q A+D++ K RT+L+IAHRLSTI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 547 TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
A+ I+V++ G +VE G+H+EL+ + G Y Q+ ++Q
Sbjct: 544 QADEIVVVEDGIIVERGTHSELL--AQHGVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 169/542 (31%), Positives = 282/542 (52%), Gaps = 42/542 (7%)
Query: 726 RTLSLFFLGVAVLNFISSLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSA 785
R L LG+ + +S Y S + + ++R +L M + +FDQE ++
Sbjct: 65 RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STG 122
Query: 786 AICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVL-----SWRLTLVMIAVQPL 840
+ +R+ ++ V + +V+ + I+GL+ SW+L+LV+I V P+
Sbjct: 123 GLLSRITYDSEQVAGATSRALVSIVRE-----GASIIGLLTLMFWNSWQLSLVLIVVAPV 177
Query: 841 VIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTITAFSSQKRILGLFKETLRGP 900
V + + + ++ + A + A + + H+ + ++ Q+ F +
Sbjct: 178 VAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSM 237
Query: 901 KEESLKH-----------SWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQ 949
+++++K + + LF+ F + + A +TP
Sbjct: 238 RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAE-----------LTPGTFTV 286
Query: 950 AFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPDSPQGRDIKRQMRGRI 1009
F + + S+TS+ +G A +++F ++D +E D G+ ++ G +
Sbjct: 287 VFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD----NGKYEAERVNGEV 342
Query: 1010 ELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVF 1069
++K+V F Y + ++ L +S I GKTVALVG+SG GKSTI L RFYD GS+
Sbjct: 343 DVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 1070 MDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEIKKAAVLANAHE 1128
+D D+R+Y L LR H ALVSQ LF TI NIAY + + +I++AA A+A E
Sbjct: 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAME 461
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
FI M G DT GE G LSGGQ+QR+A+ARA+L++ +L+LDEATSALD+ SE +Q
Sbjct: 462 FIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
AL+++ +T +V+AHRLSTI+++D I V+ G ++E+G H +L L++ GAY L + Q
Sbjct: 522 ALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL--LAQDGAYAQLHRIQ 579
Query: 1249 GG 1250
G
Sbjct: 580 FG 581
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 169/574 (29%), Positives = 272/574 (47%), Gaps = 45/574 (7%)
Query: 35 LMVFVLSFVINDYGNPSSSSLSNDTVDK-------YTLRLL-YVAIGV----GLSAFVEG 82
L+V ++ VIN + SL +D+ LR+L ++ +G+ GLS F
Sbjct: 27 LVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASS 86
Query: 83 LCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICE 142
C + + +MR + V FFD + G ++S I+ DS + A
Sbjct: 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGG-----LLSRITYDSEQVAGATSR 141
Query: 143 KISNTLAYXXXXXXXXXXXXXXXWRLSLAALPLTLMFIVPGLLFG-----KLMMGVIMKM 197
+ + + W+LSL L+ + P + F K + M
Sbjct: 142 ALVSIVREGASIIGLLTLMFWNSWQLSL-----VLIVVAPVVAFAISFVSKRFRKISRNM 196
Query: 198 IESYGVAGGIAEQAVSSIRTVYSYVAEHETLIRF---SNAL-QKTMELGIKQGFIKGLLM 253
+ G AEQ + + V SY + RF SN++ Q+TM+L Q ++
Sbjct: 197 QTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256
Query: 254 GSMGMIYVGWAFQAWVGSYLVTEKGEKGGSIFVAGVSIIMGGLSVLGALPNLTAITEAKV 313
+ F A V S + E F S + G + L AL ++T+ + +
Sbjct: 257 MIASLALFAVLFLASVDSI----RAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGM 312
Query: 314 AATR-IFEMVDRTPAIDTDDKMGK-ALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVP 371
AA + +F ++D ++T+ GK V GE++ +DV F Y + + L ++ +P
Sbjct: 313 AACQTLFGLMD----LETERDNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIP 367
Query: 372 AXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPV 431
T L RFYD G + LDG+ +R L LR LV+Q
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH 427
Query: 432 LFATSITENILFGKDGA-SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQ 490
LF +I NI + +G + + + AA+ A+A +FI +P G +T +G+ G +SGGQ+Q
Sbjct: 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQ 487
Query: 491 RIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANL 550
R+AIARAL+RD +L+LDEATSALD +SER +Q A+D++ K +T L+IAHRLSTI A+
Sbjct: 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE 547
Query: 551 IMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
I+V+ G+++E G H +L+ + G Y Q+ +Q
Sbjct: 548 ILVVDEGEIIERGRHADLL--AQDGAYAQLHRIQ 579
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 250 bits (639), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 175/600 (29%), Positives = 305/600 (50%), Gaps = 46/600 (7%)
Query: 668 TPSQWRLLKINMPEWGSALLGCIASIGSGAVQPINAYCVGSLISIYFRTDKSEIKSKSRT 727
T + RLL P + ++ + S + ++ Y +G I + F + +
Sbjct: 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVF------VPRRFDL 75
Query: 728 LSLFFLGVAVLNFISSLL---QHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTS 784
L + L + + ++SLL Q + + + R+R++L KL +G+FD+ +
Sbjct: 76 LPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPH-- 133
Query: 785 AAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGS 844
I +R+ + + + +++G+ + I + I+ ++ L+LV +++ PL +
Sbjct: 134 GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV-- 191
Query: 845 YYSRNVLMKSMAGKARKAQKEGSQ-------LASEAVINHRTITAFSSQKRILGLFKETL 897
++ + ++ + RK E + + E + I F+ +++ + F
Sbjct: 192 -----LITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVN 246
Query: 898 RGPKEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHLFQAFLILLFT 957
++ K +SG+ N AL +GG L +++IT I F
Sbjct: 247 ESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIIT------VGTIATFI 300
Query: 958 AY------VIAEAGSMTSDISKGSNAVRSVFAILDRRSEID-PDSPQGRDIKRQMRGRIE 1010
Y + E + + I + +F ILD E D PD+ + R++ RG IE
Sbjct: 301 GYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREV----RGEIE 356
Query: 1011 LKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070
KNV+F+Y + + +LK ++ I+ G+ VALVG +G GK+TI+ LL RFYD +G + +
Sbjct: 357 FKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414
Query: 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFI 1130
D DIR LRS I +V Q+ LF+ T++EN+ YG A + EIK+AA L ++ FI
Sbjct: 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFI 474
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
+ +GY+T + G LS GQ+Q +A+ RA L NP IL+LDEATS +D+ +E +Q A+
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM 534
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250
K+M G+T +++AHRL+TI+ +D I V+++G +VE G H+EL+ + G YY L Q G
Sbjct: 535 WKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELI--QKRGFYYELFTSQYG 592
Score = 229 bits (585), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 162/534 (30%), Positives = 274/534 (51%), Gaps = 32/534 (5%)
Query: 58 DTVDKYTLRLLYVAIGVGLSAFVEGLCWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQEQ 117
D + +Y L L + L +++G ++ R+R E + + R VGFFD
Sbjct: 74 DLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPH 133
Query: 118 GSSTTFQVVSTISNDSNSIQVAICEKISNTLAYXXXXXXXXXXXXXXXWRLSLAALPLTL 177
G ++S + ND ++I + N++ +R+++ L L
Sbjct: 134 GD-----IISRVINDVDNIN----NVLGNSIIQFFSGIVTLAGAVIMMFRVNVI-LSLVT 183
Query: 178 MFIVPGLLFGKLMMGVIMKMIESY--------GVAGGIAEQAVSSIRTVYSYVAEHETLI 229
+ IVP L+ ++ Y G GI E+ +S + + + E + +
Sbjct: 184 LSIVP---LTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEME 240
Query: 230 RFSNALQKTMELGIKQGFIKGLLMGSMGMIY-VGWAFQAWVGSYLVTEKGEKGGSI--FV 286
+F + ++G K G+L M M+ +G+A + G +L + G+I F+
Sbjct: 241 KFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFI 300
Query: 287 AGVSIIMGGLSVLGALPNLTAITEAKVAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIE 346
L+ L N+ I A +A RIFE++D + DD L VRGEIE
Sbjct: 301 GYSRQFTRPLNELSNQFNM--IQMALASAERIFEILDLEE--EKDDPDAVELREVRGEIE 356
Query: 347 FRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLL 406
F++V+F Y + VL+ + + T + LL RFYD G++L+
Sbjct: 357 FKNVWFSYDKKKP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414
Query: 407 DGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFI 466
DG IR++ LRS +G+V Q+ +LF+T++ EN+ +G GA+ +++ AAK ++ FI
Sbjct: 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFI 474
Query: 467 TKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAI 526
LP+GYET + G +S GQ+Q +AI RA + +PKIL+LDEATS +D ++E+ +Q A+
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM 534
Query: 527 DKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580
K+ +G+T++IIAHRL+TI+ A+LI+VL+ G++VE G H+EL+ + G YY++
Sbjct: 535 WKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK--RGFYYEL 586
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 248 bits (633), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 174/534 (32%), Positives = 275/534 (51%), Gaps = 36/534 (6%)
Query: 733 LGVAVLNFIS-----SLLQHYSFSVMGEKLTKRVREKLLGKLMTFEIGWFDQEDNTSAAI 787
+G+A+ F+ ++ Y K+ +R+KL L ++ +N +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFY--ANNQVGQV 120
Query: 788 CARLATEANVVRSLVGDRMSLLVQAIFGSVFSYIVGLVLSWRLTLVMIAVQPLVIGSYYS 847
+R+ + + + + + + + + L +LTL + + P I + Y
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 848 RNVLMKSMAGKARKAQKEGSQLASEA--VINHRT-----ITAFSSQKRILGLFKETLRGP 900
G+ RK +E SQ +E ++ R + +F+ + F +
Sbjct: 181 -------FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233
Query: 901 KEESLKHSWYSGIGLFSSQFFNTASTALAYWYGGRLLTQELITPEHL--FQAFLILLFTA 958
+LKH+ ++ + + G L IT L F +L LLF
Sbjct: 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGP 293
Query: 959 Y--VIAEAGSMTSDISKGSNAVRSVFAILDRRSEI-DPDSPQGRDIKRQMRGRIELKNVF 1015
++A ++T + ++ VF ++D +I + Q +IK+ GRI++ +V
Sbjct: 294 LRRLVASFTTLTQSFA----SMDRVFQLIDEDYDIKNGVGAQPIEIKQ---GRIDIDHVS 346
Query: 1016 FAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI 1075
F Y + ILK ++L IE G+TVA VG SG GKST+I L+ RFYD G + +D +I
Sbjct: 347 FQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 405
Query: 1076 RNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD 1135
+++ LR+ I LV Q+ LF+ T++ENI G+ A + E+ +AA +ANAH+FI +
Sbjct: 406 KDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQ 465
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
GYDT GERGV+LSGGQKQR+++AR L NP IL+LDEATSALD SES++QEAL+ +
Sbjct: 466 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK 525
Query: 1196 GRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQG 1249
RT ++VAHRLSTI +D I VI+NG +VE G+H EL+A + GAY L Q
Sbjct: 526 DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA--KQGAYEHLYSIQN 577
Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 171/570 (30%), Positives = 285/570 (50%), Gaps = 30/570 (5%)
Query: 28 GDGMQYPLMV-FVLSFVINDYGNPSSSSLSNDTVDKYTLRLLYVAIGVGLSAFV---EGL 83
G M PL++ + + VIN++ + + + L +AIG+ L FV +
Sbjct: 28 GIPMLIPLLIKYAIDGVINNHALTTDEKVHH----------LTIAIGIALFIFVIVRPPI 77
Query: 84 CWTRTAERQTSRMRMEY-LKSVLRQEVGFFDTQEQGSSTTFQVVSTISNDSNSIQVAICE 142
+ R Q + ++ Y ++ L + + ++ QV+S + ND + I
Sbjct: 78 EFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILT 137
Query: 143 KISNTLAYXXXXXXXXXXXXXXXWRLSLAALPLTLMFIVPGLLFGKLMMGVIMKMIESYG 202
+ N +L+LAAL + +I+ +F + + + ++
Sbjct: 138 GLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALA 197
Query: 203 VAGGIAEQAVSSIRTVYSYVAEHETLIRFSNALQKTMELGIKQGFIKGLLMGSMGMIY-V 261
G + V I V S+ E F + +K ++ + +
Sbjct: 198 EVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDI 257
Query: 262 GWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIMGGLSVLGALPNLTAITEAKVAATRIF 319
G VG+YL G++ FV + ++ G L L A + T +T++ + R+F
Sbjct: 258 GPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVA--SFTTLTQSFASMDRVF 315
Query: 320 EMVDRTPAIDTDDKMG---KALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXX 376
+++D D D K G + + +G I+ V F Y + +L+ +NL +
Sbjct: 316 QLIDE----DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETV 370
Query: 377 XXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATS 436
T I L+ RFYD G++L+DG+ I+ LR+Q+GLV Q+ +LF+ +
Sbjct: 371 AFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 430
Query: 437 ITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIAR 496
+ ENIL G+ A+ ++V+ AAK ANAHDFI LP GY+T+VG+ G ++SGGQKQR++IAR
Sbjct: 431 VKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 490
Query: 497 ALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKA 556
+ +P IL+LDEATSALD +SE I+QEA+D +SK RTTLI+AHRLSTI A+ I+V++
Sbjct: 491 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN 550
Query: 557 GKVVESGSHNELMNRGEGGEYYQMVELQQM 586
G +VE+G+H EL+ + G Y + +Q +
Sbjct: 551 GHIVETGTHRELI--AKQGAYEHLYSIQNL 578
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 225 bits (574), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/283 (45%), Positives = 179/283 (63%), Gaps = 9/283 (3%)
Query: 971 ISKGSNA---VRSVFAILDRRSEIDPDSPQGRDIKRQMRGRIELKNVFFAYPTRPDQMIL 1027
+ +GS+ + ++F +L +E+ D P ++ Q +GRIE +NV F+Y + L
Sbjct: 15 VPRGSHMFIDMENMFDLLKEETEV-KDLPGAGPLRFQ-KGRIEFENVHFSYAD--GRETL 70
Query: 1028 KGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHI 1087
+ +S + G+T+ALVG SG GKSTI+ LL RFYD G + +D QDI LRSHI
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 1088 ALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ 1147
+V Q+ LF TI +NI YG+ A E++ AA A H+ I +GY T GERG++
Sbjct: 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLS 1207
LSGG+KQR+A+AR ILK P I+LLDEATSALD+ +E +Q +L K+ RT +VVAHRLS
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 1208 TIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQGG 1250
T+ +D I VIK+G +VE+G H L LSRGG Y + + Q G
Sbjct: 251 TVVNADQILVIKDGCIVERGRHEAL--LSRGGVYADMWQLQQG 291
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Query: 338 LSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFY 397
L + +G IEF +V+F Y +TL Q ++ V T + LL RFY
Sbjct: 47 LRFQKGRIEFENVHFSYADGRETL--QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104
Query: 398 DPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAA 457
D G + +DG I ++ LRS +G+V Q+ VLF +I +NI +G+ A D+V +AA
Sbjct: 105 DISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAA 164
Query: 458 KAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQ 517
+AA HD I P+GY TQVG+ G ++SGG+KQR+AIAR +++ P I+LLDEATSALD
Sbjct: 165 QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 518 SERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
+ER +Q ++ KV RTT+++AHRLST+ A+ I+V+K G +VE G H L++R GG Y
Sbjct: 225 NERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR--GGVY 282
Query: 578 YQMVELQQMASENDTSNDT 596
M +LQQ + +TS DT
Sbjct: 283 ADMWQLQQ--GQEETSEDT 299
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 151/224 (67%), Gaps = 3/224 (1%)
Query: 1012 KNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMD 1071
++V FAY + IL+ +S + + +A G SG GKSTI LLERFY P G + +D
Sbjct: 5 RHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1072 EQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEIKKAAVLANAHEFI 1130
Q I N +L+ RS I VSQ+ + AGTIREN+ YG + D + ++ + LA A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEAL 1190
M D +T GERGV++SGGQ+QR+A+ARA L+NP IL+LDEAT++LDS SES+VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
+ +M GRT +V+AHRLSTI +D I I+ G++ G HNELVA
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 129/183 (70%), Gaps = 1/183 (0%)
Query: 388 TTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDG 447
T +LL+RFY P GE+ +DG I + L+ RSQ+G V+Q+ + A +I EN+ +G +G
Sbjct: 43 TIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG 102
Query: 448 ASMD-DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILL 506
D D+ A A F+ +PD T+VG+ G ++SGGQ+QR+AIARA +R+PKIL+
Sbjct: 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162
Query: 507 LDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHN 566
LDEAT++LD++SE +VQ+A+D + KGRTTL+IAHRLSTI A+ I ++ G++ SG HN
Sbjct: 163 LDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHN 222
Query: 567 ELM 569
EL+
Sbjct: 223 ELV 225
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 210 bits (534), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 139/497 (27%), Positives = 262/497 (52%), Gaps = 19/497 (3%)
Query: 761 VREKLLGKLMTFEIGWFDQEDNTSAAICARLATEANVVRSLVGDRMSLLVQAIFGSVFSY 820
+R L K+++F I ++ +S + RL + +++LV + ++V+A V
Sbjct: 98 LRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 821 IVGLVLSWRLTLVMIAVQPLVIGSYYSRNVLMKSMAGKARKAQKEGSQLASEAVINHRTI 880
++ + ++ +L+ V+I + P ++ + + K +++ E +++ E ++ R +
Sbjct: 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVV 215
Query: 881 TAFSSQKRILGLFKETLRGPKEESLKHSWYSGIGL--FSSQFF----NTASTALAYWYGG 934
AF ++ F++ ESL+ S S L F+ F N A+ W+GG
Sbjct: 216 RAFRREEYENENFRKA-----NESLRRSIISAFSLIVFALPLFIFIVNMGMIAV-LWFGG 269
Query: 935 RLLTQELITPEHLFQAFLILLFTAYVIAEAGSMTSDISKGSNAVRSVFAILDRRSEIDPD 994
L+ + + L+ + + G++ + I + S + + V +L+ + I+ +
Sbjct: 270 VLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE-E 328
Query: 995 SPQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTII 1054
+ + + G + +NV F Y D +L G++ ++ G VA++G++G GKST++
Sbjct: 329 ADNALALP-NVEGSVSFENVEFRYFENTDP-VLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 1055 GLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARE 1114
L+ R DP +G V +DE D+R LK LR HI+ V QE LF+GTI+EN+ +G+ DA +
Sbjct: 387 NLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD 446
Query: 1115 SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
EI +AA +A H+FI + +GYD+ G SGGQKQR+++ARA++K P +L+LD+
Sbjct: 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC 506
Query: 1175 TSALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVA 1234
TS++D ++E + + L++ G T ++ ++ T +D I V+ G+V G+H EL
Sbjct: 507 TSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL-- 564
Query: 1235 LSRGGAYYSLIKPQGGS 1251
L Y + + Q G+
Sbjct: 565 LEHCKPYREIYESQFGN 581
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 183/332 (55%), Gaps = 13/332 (3%)
Query: 255 SMGMIYVGWAFQAWVGSYLVTEKGEKGGSI--FVAGVSIIMGGLSVLGALPNLTAITEAK 312
+MGMI V W G LV + GSI + + IM L ++G + N I A
Sbjct: 258 NMGMIAV-----LWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF--IVRAS 310
Query: 313 VAATRIFEMVDRTPAIDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPA 372
+A R+ E+++ PAI+ D AL V G + F +V F Y D VL G+N V
Sbjct: 311 ASAKRVLEVLNEKPAIEEADN-ALALPNVEGSVSFENVEFRYFENTDP-VLSGVNFSVKP 368
Query: 373 XXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVL 432
T + L+ R DP G V +D +R + LK LR + V QE VL
Sbjct: 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428
Query: 433 FATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRI 492
F+ +I EN+ +G++ A+ D+++ AAK A HDFI LP+GY+++V + G SGGQKQR+
Sbjct: 429 FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488
Query: 493 AIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIM 552
+IARAL++ PK+L+LD+ TS++D +E+ + + + + +KG TT II ++ T A+ I+
Sbjct: 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKIL 548
Query: 553 VLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
VL GKV G+H EL+ + Y ++ E Q
Sbjct: 549 VLHEGKVAGFGTHKELLEHCK--PYREIYESQ 578
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 160/244 (65%), Gaps = 3/244 (1%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
IE +V F+YP + + LK ++ I +G T ALVG +G GKSTI LL RFYD +G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHE 1128
+ +++ YN +RS I +V Q+ LF TI+ NI YGK DA + E+ KA A ++
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1129 FISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQE 1188
FI + +DT G +G++LSGG++QRIA+AR +LK+P I++ DEATS+LDS +E L Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1189 ALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYSLIKPQ 1248
A+E + RT +++AHRLSTI +++I ++ G++VE+G+H +L+ L+ G Y + Q
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN--GEYAEMWNMQ 254
Query: 1249 GGSS 1252
G +
Sbjct: 255 SGGN 258
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 154/240 (64%), Gaps = 3/240 (1%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEV 404
IEF DV F YP + + L+ +N +P+ T LL RFYD EG++
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHD 464
+ G + + + +RS +G+V Q+ +LF +I NIL+GK A+ ++VI A K+A +D
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQE 524
FI LP ++T VG G ++SGG++QRIAIAR L++DPKI++ DEATS+LD+++E + Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 525 AIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQ 584
A++ + K RT +IIAHRLSTI +A I++L GK+VE G+H +L+ GEY +M +Q
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL--NGEYAEMWNMQ 254
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 151/231 (65%), Gaps = 3/231 (1%)
Query: 344 EIEFRDVYFCYPSRPDT-LVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEG 402
+I FR++ F Y +PD+ ++L +NL + T L+QRFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
+VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
HDFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ DEATSALD +SE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ K+ KGRT +IIAHRLST++ A+ I+V++ GK+VE G H EL++ E
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 231
Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 5/236 (2%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I +N+ F Y +PD +IL ++L I+ G+ + +VG+SG GKST+ L++RFY P G
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
V +D D+ + LR + +V Q+ L +I +NI+ ++ AA LA AH
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+ K+ GRT +++AHRLST++ +D I V++ G++VEQG H EL LS + YS
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL--LSEPESLYS 235
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 151/231 (65%), Gaps = 3/231 (1%)
Query: 344 EIEFRDVYFCYPSRPDT-LVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEG 402
+I FR++ F Y +PD+ ++L +NL + T L+QRFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
+VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
HDFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ DEATSALD +SE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ K+ KGRT +IIAHRLST++ A+ I+V++ GK+VE G H EL++ E
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 231
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 153/236 (64%), Gaps = 5/236 (2%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I +N+ F Y +PD +IL ++L I+ G+ + +VG++G GKST+ L++RFY P G
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
V +D D+ + LR + +V Q+ L +I +NI+ ++ AA LA AH
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+ K+ GRT +++AHRLST++ +D I V++ G++VEQG H EL LS + YS
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL--LSEPESLYS 235
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 151/231 (65%), Gaps = 3/231 (1%)
Query: 344 EIEFRDVYFCYPSRPDT-LVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEG 402
+I FR++ F Y +PD+ ++L +NL + T L+QRFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
+VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
HDFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ DEATSALD +SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ K+ KGRT +IIAHRLST++ A+ I+V++ GK+VE G H EL++ E
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 229
Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 5/236 (2%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I +N+ F Y +PD +IL ++L I+ G+ + +VG+SG GKST+ L++RFY P G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
V +D D+ + LR + +V Q+ L +I +NI+ ++ AA LA AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+ K+ GRT +++AHRLST++ +D I V++ G++VEQG H EL LS + YS
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL--LSEPESLYS 233
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 151/231 (65%), Gaps = 3/231 (1%)
Query: 344 EIEFRDVYFCYPSRPDT-LVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEG 402
+I FR++ F Y +PD+ ++L +NL + T L+QRFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
+VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
HDFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ DEATSALD +SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ K+ KGRT +IIAHRLST++ A+ I+V++ GK+VE G H EL++ E
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 5/236 (2%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I +N+ F Y +PD +IL ++L I+ G+ + +VG+SG GKST+ L++RFY P G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
V +D D+ + LR + +V Q+ L +I +NI+ ++ AA LA AH
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+ K+ GRT +++AHRLST++ +D I V++ G++VEQG H EL LS + YS
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL--LSEPESLYS 239
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 206 bits (525), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 151/231 (65%), Gaps = 3/231 (1%)
Query: 344 EIEFRDVYFCYPSRPDT-LVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEG 402
+I FR++ F Y +PD+ ++L +NL + T L+QRFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
+VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
HDFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ D+ATSALD +SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ K+ KGRT +IIAHRLST++ A+ I+V++ GK+VE G H EL++ E
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 153/236 (64%), Gaps = 5/236 (2%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I +N+ F Y +PD +IL ++L I+ G+ + +VG+SG GKST+ L++RFY P G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
V +D D+ + LR + +V Q+ L +I +NI+ ++ AA LA AH
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ D+ATSALD SE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+ K+ GRT +++AHRLST++ +D I V++ G++VEQG H EL LS + YS
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL--LSEPESLYS 239
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 153/245 (62%), Gaps = 5/245 (2%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M+G ++ ++V FAYP P+ +L+GL+ + GK ALVG +G GKST+ LL+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARE-SEIKKAAVL 1123
G V +D + + Y+ L + +A V QEP LF + RENIAYG EI A+
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
+ AH+FISG GYDT GE G QLSGGQ+Q +ALARA+++ P +L+LD+ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 1184 SLVQEAL--EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241
VQ L RT +++ H+LS +++ I +K G V EQG+H +L + RGG Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQL--MERGGCY 250
Query: 1242 YSLIK 1246
S+++
Sbjct: 251 RSMVE 255
Score = 194 bits (492), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 149/245 (60%), Gaps = 5/245 (2%)
Query: 341 VRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPV 400
++G ++F+DV F YP+ P+ VLQGL + T ALLQ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG-KDGASMDDVISAAKA 459
G+VLLDG + + +L +Q+ V QEP+LF S ENI +G +M+++ + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ AHDFI+ P GY+T+VG+ G Q+SGGQ+Q +A+ARALIR P++L+LD+ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 520 RIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
VQ + + + RT L+I H+LS A+ I+ LK G V E G+H +LM R GG Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER--GGCY 250
Query: 578 YQMVE 582
MVE
Sbjct: 251 RSMVE 255
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 150/231 (64%), Gaps = 3/231 (1%)
Query: 344 EIEFRDVYFCYPSRPDT-LVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEG 402
+I FR++ F Y +PD+ ++L +NL + T L+QRFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
+VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
HDFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ DEATSALD +SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ K+ KGRT +IIA RLST++ A+ I+V++ GK+VE G H EL++ E
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 229
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 152/236 (64%), Gaps = 5/236 (2%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I +N+ F Y +PD +IL ++L I+ G+ + +VG+SG GKST+ L++RFY P G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
V +D D+ + LR + +V Q+ L +I +NI+ ++ AA LA AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+ K+ GRT +++A RLST++ +D I V++ G++VEQG H EL LS + YS
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKEL--LSEPESLYS 233
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 150/231 (64%), Gaps = 3/231 (1%)
Query: 344 EIEFRDVYFCYPSRPDT-LVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEG 402
+I FR++ F Y +PD+ ++L +NL + T L+QRFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 403 EVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAANA 462
+VL+DG+ + WLR Q+G+V Q+ VL SI +NI G S++ VI AAK A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
HDFI++L +GY T VG+ G +SGGQ+QRIAIARAL+ +PKIL+ DEATSALD +SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 523 QEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGE 573
+ K+ KGRT +IIA RLST++ A+ I+V++ GK+VE G H EL++ E
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 152/236 (64%), Gaps = 5/236 (2%)
Query: 1009 IELKNVFFAYPTRPDQ-MILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I +N+ F Y +PD +IL ++L I+ G+ + +VG+SG GKST+ L++RFY P G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
V +D D+ + LR + +V Q+ L +I +NI+ ++ AA LA AH
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
+FIS +++GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1188 EALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYYS 1243
+ K+ GRT +++A RLST++ +D I V++ G++VEQG H EL LS + YS
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKEL--LSEPESLYS 239
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 151/245 (61%), Gaps = 5/245 (2%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M+G ++ ++V FAYP P+ +L+GL+ + GK ALVG +G GKST+ LL+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARESEIKKAAVL 1123
G V +D + + Y+ L + +A V QEP LF + RENIAYG EI A+
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
+ AH+FISG GYDT GE G QLSGGQ+Q +ALARA+++ P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1184 SLVQEAL--EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241
VQ L RT +++ +LS +++ I +K G V EQG+H +L + RGG Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL--MERGGCY 250
Query: 1242 YSLIK 1246
S+++
Sbjct: 251 RSMVE 255
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 147/245 (60%), Gaps = 5/245 (2%)
Query: 341 VRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPV 400
++G ++F+DV F YP+ P+ VLQGL + T ALLQ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG-KDGASMDDVISAAKA 459
G+VLLDG + + +L +Q+ V QEP+LF S ENI +G +M+++ + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ AHDFI+ P GY+T+VG+ G Q+SGGQ+Q +A+ARALIR P++L+LD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 520 RIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
VQ + + + RT L+I +LS A+ I+ LK G V E G+H +LM R GG Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER--GGCY 250
Query: 578 YQMVE 582
MVE
Sbjct: 251 RSMVE 255
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 158/256 (61%), Gaps = 9/256 (3%)
Query: 996 PQGRDIKRQMRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIG 1055
P G + G ++ ++V FAYP RPD ++L+GL+ + G+ ALVG +G GKST+
Sbjct: 2 PSGLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAA 61
Query: 1056 LLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG-KADARE 1114
LL+ Y P G + +D + + Y + L +A V QEP +F +++ENIAYG
Sbjct: 62 LLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTM 121
Query: 1115 SEIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEA 1174
EI AAV + AH FISG+ GYDT E G QLSGGQ+Q +ALARA+++ P +L+LD+A
Sbjct: 122 EEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDA 181
Query: 1175 TSALDSVS----ESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHN 1230
TSALD+ S E L+ E+ E+ R+ +++ LS ++++D I ++ G + E G+H
Sbjct: 182 TSALDANSQLQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQ 239
Query: 1231 ELVALSRGGAYYSLIK 1246
+L + + G Y+++++
Sbjct: 240 QL--MEKKGCYWAMVQ 253
Score = 190 bits (482), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 154/255 (60%), Gaps = 9/255 (3%)
Query: 340 YVRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDP 399
++ G ++F+DV F YP+RPD LVLQGL + T ALLQ Y P
Sbjct: 10 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 400 VEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG-KDGASMDDVISAAK 458
G++LLDG + + ++L Q+ V QEP +F S+ ENI +G +M+++ +AA
Sbjct: 70 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 129
Query: 459 AANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQS 518
+ AH FI+ LP GY+T+V + G Q+SGGQ+Q +A+ARALIR P +L+LD+ATSALDA S
Sbjct: 130 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Query: 519 ----ERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEG 574
E+++ E+ ++ S R+ L+I LS + A+ I+ L+ G + E G+H +LM +
Sbjct: 190 QLQVEQLLYESPERYS--RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--K 245
Query: 575 GEYYQMVELQQMASE 589
G Y+ MV+ A E
Sbjct: 246 GCYWAMVQAPADAPE 260
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 196 bits (497), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 150/245 (61%), Gaps = 5/245 (2%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M+G ++ ++V FAYP P+ +L+GL+ + GK ALVG +G GKST+ LL+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARE-SEIKKAAVL 1123
G V +D + + Y+ L + +A V QEP LF + RENIAYG EI A+
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
+ AH+FISG GYDT GE G QL+ GQ+Q +ALARA+++ P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1184 SLVQEAL--EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAY 1241
VQ L RT +++ +LS +++ I +K G V EQG+H +L + RGG Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL--MERGGCY 250
Query: 1242 YSLIK 1246
S+++
Sbjct: 251 RSMVE 255
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 146/245 (59%), Gaps = 5/245 (2%)
Query: 341 VRGEIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPV 400
++G ++F+DV F YP+ P+ VLQGL + T ALLQ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFG-KDGASMDDVISAAKA 459
G+VLLDG + + +L +Q+ V QEP+LF S ENI +G +M+++ + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ AHDFI+ P GY+T+VG+ G Q++ GQ+Q +A+ARALIR P++L+LD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 520 RIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEY 577
VQ + + + RT L+I +LS A+ I+ LK G V E G+H +LM R GG Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER--GGCY 250
Query: 578 YQMVE 582
MVE
Sbjct: 251 RSMVE 255
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 26/244 (10%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
I ++N F + R D L G++ I G VA+VGQ GCGKS+++ L D ++G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYG---KADARESEIKKAAVLAN 1125
++ +A V Q+ + ++RENI +G + S I+ A+L +
Sbjct: 63 -------------AIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1126 AHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS-VSES 1184
SG + T GE+GV LSGGQKQR++LARA+ N I L D+ SA+D+ V +
Sbjct: 110 LEILPSGDR----TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1185 LVQEAL--EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGGAYY 1242
+ + + + M+ +T ++V H +S + + D I V+ G++ E GS+ EL L+R GA+
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL--LARDGAFA 223
Query: 1243 SLIK 1246
++
Sbjct: 224 EFLR 227
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 109/232 (46%), Gaps = 22/232 (9%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEV 404
I R+ F + +R D L G+ +P + ++ L D VEG V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANA 462
+ G W+++ S+ ENILFG +++ S +A
Sbjct: 63 AIKGSVAYVPQQAWIQND-------------SLRENILFG---CQLEEPYYRSVIQACAL 106
Query: 463 HDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIV 522
+ LP G T++G+ G +SGGQKQR+++ARA+ + I L D+ SA+DA + +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 523 QEAI---DKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
E + + K +T +++ H +S + ++I+V+ GK+ E GS+ EL+ R
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 23/237 (9%)
Query: 1009 IELKNV--FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I+L N+ F TR Q L +SL + AG+ ++G SG GKST+I + P +G
Sbjct: 2 IKLSNITKVFHQGTRTIQA-LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 1067 SVFMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYGKA--DARESEIKKA 1120
SV +D Q++ + L + R I ++ Q L + T+ N+A + + E+K+
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 1121 AVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
E +S G+ D +D+Y LSGGQKQR+A+ARA+ NP +LL DEATSAL
Sbjct: 121 VT-----ELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 1179 DSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
D + + E L+ + +G T +++ H + +++ D +AVI NG ++EQ + +E+
Sbjct: 172 DPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 41/235 (17%)
Query: 360 TLVLQGLN---LRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRL-- 414
T +Q LN L VPA T I + P EG VL+DG ++ L
Sbjct: 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 74
Query: 415 -HLKWLRSQMGLVNQEPVLFATSITENILFGK-------DGASMDDV-------ISAAKA 459
L R Q+G++ Q L ++ +FG D D+V +S
Sbjct: 75 SELTKARRQIGMIFQHFNLLSS----RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL 130
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ HD Y + +SGGQKQR+AIARAL +PK+LL DEATSALD +
Sbjct: 131 GDKHD-------SYPSN-------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 520 RIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
R + E + +++ G T L+I H + + R + + V+ G+++E + +E+ +
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 130/237 (54%), Gaps = 23/237 (9%)
Query: 1009 IELKNV--FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I+L N+ F TR Q L +SL + AG+ ++G SG GKST+I + P +G
Sbjct: 25 IKLSNITKVFHQGTRTIQA-LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 1067 SVFMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYGKA--DARESEIKKA 1120
SV +D Q++ + L + R I ++ Q L + T+ N+A + + E+K+
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 143
Query: 1121 AVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
E +S G+ D +D+Y LSGGQKQR+A+ARA+ NP +LL D+ATSAL
Sbjct: 144 VT-----ELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 1179 DSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
D + + E L+ + +G T +++ H + +++ D +AVI NG ++EQ + +E+
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 41/235 (17%)
Query: 360 TLVLQGLN---LRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRL-- 414
T +Q LN L VPA T I + P EG VL+DG ++ L
Sbjct: 38 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97
Query: 415 -HLKWLRSQMGLVNQEPVLFATSITENILFGK-------DGASMDDV-------ISAAKA 459
L R Q+G++ Q L ++ +FG D D+V +S
Sbjct: 98 SELTKARRQIGMIFQHFNLLSS----RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL 153
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ HD Y + +SGGQKQR+AIARAL +PK+LL D+ATSALD +
Sbjct: 154 GDKHD-------SYPSN-------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199
Query: 520 RIVQEAIDKVSK--GRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMNR 571
R + E + +++ G T L+I H + + R + + V+ G+++E + +E+ +
Sbjct: 200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 128/237 (54%), Gaps = 23/237 (9%)
Query: 1009 IELKNV--FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I+L N+ F TR Q L +SL + AG+ ++G SG GKST+I + P +G
Sbjct: 25 IKLSNITKVFHQGTRTIQA-LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 1067 SVFMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYGKA--DARESEIKKA 1120
SV +D Q++ + L + R I + Q L + T+ N+A + + E+K+
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 143
Query: 1121 AVLANAHEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL 1178
E +S G+ D +D+Y LSGGQKQR+A+ARA+ NP +LL D+ATSAL
Sbjct: 144 VT-----ELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 1179 DSVSESLVQEALEKM--MMGRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
D + + E L+ + +G T +++ H +++ D +AVI NG ++EQ + +E+
Sbjct: 195 DPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 116/267 (43%), Gaps = 52/267 (19%)
Query: 328 IDTDDKMGKALSYVRGEIEFRDVYFCYPSRPDTLVLQGLN---LRVPAXXXXXXXXXXXX 384
ID DDK LS + F +R +Q LN L VPA
Sbjct: 17 IDDDDKHXIKLSNITK-------VFHQGTR----TIQALNNVSLHVPAGQIYGVIGASGA 65
Query: 385 XXXTTIALLQRFYDPVEGEVLLDGYKIRRL---HLKWLRSQMGLVNQEPVLFATSITENI 441
T I + P EG VL+DG ++ L L R Q+G + Q L ++
Sbjct: 66 GKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSS----RT 121
Query: 442 LFGK-------DGASMDDV-------ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGG 487
+FG D D+V +S + HD Y + +SGG
Sbjct: 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-------SYPSN-------LSGG 167
Query: 488 QKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTI 545
QKQR+AIARAL +PK+LL D+ATSALD + R + E + +++ G T L+I H +
Sbjct: 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVV 227
Query: 546 -RTANLIMVLKAGKVVESGSHNELMNR 571
R + + V+ G+++E + +E+ +
Sbjct: 228 KRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 104 bits (259), Expect = 3e-22, Method: Composition-based stats.
Identities = 73/214 (34%), Positives = 116/214 (54%), Gaps = 19/214 (8%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L ++LKI+ G+ +AL+G SG GKST++ + Y P G ++ DE+D+ K +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 1087 IALVSQEPTLFAG-TIRENIAYG----KADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
+ LV Q L+ T+ +NIA+ KA E + K V H D
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH---------IDKLL 127
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTC 1199
QLSGGQ+QR+A+ARA++K P +LLLDE S LD++ V+ L+++ +G T
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 1200 VVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
V V H + + +D IAVI+ G +++ G+ +E+
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 15/212 (7%)
Query: 363 LQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQ 422
L +NL++ T + + Y P G++ D + L K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 423 MGLVNQEPVLFA-TSITENILFGKD--GASMDDVISAAKAANAHDFITKLPDGYETQVGQ 479
+GLV Q L+ ++ +NI F + A +++ + I KL + Y
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP----- 131
Query: 480 LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLI 537
+Q+SGGQ+QR+AIARAL+++P++LLLDE S LDA V+ + ++ K G TT+
Sbjct: 132 --WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 538 IAH-RLSTIRTANLIMVLKAGKVVESGSHNEL 568
+ H + + A+ I V++ G++++ G+ +E+
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 18/218 (8%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLK---QL 1083
LKG+++ I+ G+ A++G +G GKST+ P G + D + I +Y+ K +L
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI-DYSRKGIMKL 82
Query: 1084 RSHIALVSQEPT--LFAGTIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDT 1139
R I +V Q+P LF+ ++ +++++G + + E EI+K A I +KD T
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPT 141
Query: 1140 YCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGR 1197
+C LS GQK+R+A+A ++ P +L+LDE T+ LD + S + + L +M +G
Sbjct: 142 HC------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 1198 TCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNELVA 1234
T ++ H + + D + V+K GRV+ QG+ E+ A
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 27/199 (13%)
Query: 391 ALLQRF---YDPVEGEVLLDGYKI--RRLHLKWLRSQMGLVNQEP--VLFATSITENILF 443
L Q F P G +L D I R + LR +G+V Q+P LF+ S+ +++ F
Sbjct: 49 TLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108
Query: 444 GKDGASMDDVISAAKAANAHDFITKLPD------GYETQVGQLGFQMSGGQKQRIAIARA 497
G A D I K D G E + +S GQK+R+AIA
Sbjct: 109 G-----------AVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157
Query: 498 LIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVL 554
L+ +PK+L+LDE T+ LD + + + ++ K G T +I H + + + + V+
Sbjct: 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217
Query: 555 KAGKVVESGSHNELMNRGE 573
K G+V+ G+ E+ E
Sbjct: 218 KEGRVILQGNPKEVFAEKE 236
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 114/212 (53%), Gaps = 15/212 (7%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
+ G+S +++ G+ VAL+G SGCGK+T + +L Y P G ++ D D+ ++
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYRE 76
Query: 1087 IALVSQEPTLFAG-TIRENIAYGKADAR--ESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
+ +V Q L+ T+ ENIA+ R + E++K V I + D T
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT---- 132
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVV 1201
QLSGGQ+QR+ALARA++K P +LL DE S LD+ +++ ++ + +G T V
Sbjct: 133 ---QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189
Query: 1202 VAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
V H + + + IAV G++V+ G+ +E+
Sbjct: 190 VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 15/189 (7%)
Query: 388 TTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKD 446
TT+ +L Y P GE+ D + + K+ ++G+V Q L+ ++ ENI F
Sbjct: 44 TTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAFPLR 101
Query: 447 G--ASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKI 504
S D+V I L D TQ +SGGQ+QR+A+ARAL++ PK+
Sbjct: 102 ARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ-------LSGGQQQRVALARALVKQPKV 154
Query: 505 LLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRT-ANLIMVLKAGKVVE 561
LL DE S LDA I++ I + + G T++ + H + T A+ I V GK+V+
Sbjct: 155 LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214
Query: 562 SGSHNELMN 570
G+ +E+ +
Sbjct: 215 YGTPDEVYD 223
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 19/217 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR--NYNLKQL 1083
+LKG+++ I G+ V ++G SG GKST + L D +G + +D +++ + NL ++
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGYDTY 1140
R + +V Q LF T+ NI R+ +KA A A E + G+KD Y
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKVGLKDKAHAY 156
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM----G 1196
LSGGQ QR+A+ARA+ P I+L DE TSALD +V E L M G
Sbjct: 157 PD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP---EMVGEVLSVMKQLANEG 209
Query: 1197 RTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
T VVV H + ++ D + + G ++E+G +L
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 9/215 (4%)
Query: 362 VLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDG--YKIRRLHLKWL 419
VL+G+N+ + T + L D EGE+++DG K + +L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 420 RSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
R ++G+V Q LF ++ NI + A A + + K+ G + +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKV--GLKDKAH 154
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLI 537
+SGGQ QR+AIARAL +PKI+L DE TSALD + V + +++ +G T ++
Sbjct: 155 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214
Query: 538 IAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571
+ H + R + ++ + G ++E G +L +R
Sbjct: 215 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 19/217 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR--NYNLKQL 1083
+LKG+++ I G+ V ++G SG GKST + L D +G + +D +++ + NL ++
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFIS--GMKDGYDTY 1140
R + +V Q LF T+ NI R+ +KA A A E + G+KD Y
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKVGLKDKAHAY 135
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM----G 1196
LSGGQ QR+A+ARA+ P I+L DE TSALD +V E L M G
Sbjct: 136 PD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP---EMVGEVLSVMKQLANEG 188
Query: 1197 RTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGSHNEL 1232
T VVV H + ++ D + + G ++E+G +L
Sbjct: 189 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 9/215 (4%)
Query: 362 VLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDG--YKIRRLHLKWL 419
VL+G+N+ + T + L D EGE+++DG K + +L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 420 RSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVG 478
R ++G+V Q LF ++ NI + A A + + K+ G + +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKV--GLKDKAH 133
Query: 479 QLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLI 537
+SGGQ QR+AIARAL +PKI+L DE TSALD + V + +++ +G T ++
Sbjct: 134 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 193
Query: 538 IAHRLSTIR-TANLIMVLKAGKVVESGSHNELMNR 571
+ H + R + ++ + G ++E G +L +R
Sbjct: 194 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 96.7 bits (239), Expect = 7e-20, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 11/210 (5%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
++G+S +I G+ V L+G SG GK+TI+ L+ P KG V++ + R +L + +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK--RVTDLPPQKRN 88
Query: 1087 IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
+ LV Q LF T+ +N+++G RE + K + A E + M+ ++Y
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFG---LREKRVPKDEMDARVRELLRFMR--LESYANRFP 143
Query: 1146 VQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCVVVA 1203
+LSGGQ+QR+ALARA+ P +LL DE +A+D+ ++ + ++ MG T V V
Sbjct: 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203
Query: 1204 H-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
H + ++ +D + V+ G V + G+ E+
Sbjct: 204 HDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
Score = 67.4 bits (163), Expect = 5e-11, Method: Composition-based stats.
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 13/231 (5%)
Query: 345 IEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEV 404
IEF V YP ++ +G++ ++ T + L+ P +G+V
Sbjct: 15 IEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 405 LLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGASMDDVISAAKAANAH 463
+ G ++ L + + +GLV Q LF ++ +N+ FG + A+
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 464 DFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQ 523
F+ E+ + ++SGGQ+QR+A+ARAL P++LL DE +A+D Q R ++
Sbjct: 131 RFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 524 EAIDKV--SKGRTTLIIAH-RLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
+ +V G T++ + H + + A+ ++VL G V + G+ E+ +
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 19/226 (8%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072
NV F++ +LK ++L IE G+ +A+ G +G GK++++ L+ G + E
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFI 1130
I++ ++ SQ + GTI+ENI +G + + R + KA L + I
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL---QQDI 143
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA- 1189
+ + +T GE GV LSGGQ+ RI+LARA+ K+ + LLD LD +E V E+
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1190 LEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
+ K+M +T ++V ++ ++K+D I ++ G G+ +EL +L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 249
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 436 SITENILFGKDGASMDDV--ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493
+I ENI+FG S D+ S KA ITK + T +G+ G +SGGQ+ RI+
Sbjct: 114 TIKENIIFG---VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 494 IARALIRDPKILLLDEATSALDA-QSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIM 552
+ARA+ +D + LLD LD E++ + + K+ +T +++ ++ +R A+ I+
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 553 VLKAGKVVESGSHNEL 568
+L G G+ +EL
Sbjct: 231 ILHQGSSYFYGTFSEL 246
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 19/226 (8%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072
NV F++ +LK ++L IE G+ +A+ G +G GK++++ L+ G + E
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFI 1130
I++ ++ SQ + GTI+ENI +G + + R + KA L + I
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL---QQDI 143
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA- 1189
+ + +T GE GV LSGGQ+ RI+LARA+ K+ + LLD LD +E V E+
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1190 LEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
+ K+M +T ++V ++ ++K+D I ++ G G+ +EL +L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 249
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 436 SITENILFGKDGASMDDV--ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493
+I ENI+FG S D+ S KA ITK + T +G+ G +SGGQ+ RI+
Sbjct: 114 TIKENIIFG---VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 494 IARALIRDPKILLLDEATSALDA-QSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIM 552
+ARA+ +D + LLD LD E++ + + K+ +T +++ ++ +R A+ I+
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 553 VLKAGKVVESGSHNEL 568
+L G G+ +EL
Sbjct: 231 ILHQGSSYFYGTFSEL 246
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 113/213 (53%), Gaps = 19/213 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+LK ++ KIE G+ +A+ G +G GK++++ ++ +P +G + +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 69
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
I+ SQ + GTI+ENI +G + + R + KA L E IS + + GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL---EEDISKFAEKDNIVLGE 126
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVV 1202
G+ LSGGQ+ RI+LARA+ K+ + LLD LD ++E + + + K+M +T ++V
Sbjct: 127 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186
Query: 1203 AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
++ ++K+D I ++ G G+ +EL L
Sbjct: 187 TSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 19/214 (8%)
Query: 360 TLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL+ +N ++ + + ++ +P EG++ G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANAHDFITKLPDGYETQV 477
++ +Q + +I ENI+FG S D+ S KA + I+K + +
Sbjct: 70 --RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 124
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTL 536
G+ G +SGGQ+ RI++ARA+ +D + LLD LD +E+ I + + K+ +T +
Sbjct: 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
++ ++ ++ A+ I++L G G+ +EL N
Sbjct: 185 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 113/213 (53%), Gaps = 19/213 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+LK ++ KIE G+ +A+ G +G GK++++ ++ +P +G + +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 81
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
I+ SQ + GTI+ENI +G + + R + KA L E IS + + GE
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL---EEDISKFAEKDNIVLGE 138
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVV 1202
G+ LSGGQ+ RI+LARA+ K+ + LLD LD ++E + + + K+M +T ++V
Sbjct: 139 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 198
Query: 1203 AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
++ ++K+D I ++ G G+ +EL L
Sbjct: 199 TSKMEHLKKADKILILHEGSSYFYGTFSELQNL 231
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 19/214 (8%)
Query: 360 TLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL+ +N ++ + + ++ +P EG++ G
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 81
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANAHDFITKLPDGYETQV 477
++ +Q + +I ENI+FG S D+ S KA + I+K + +
Sbjct: 82 --RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 136
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTL 536
G+ G +SGGQ+ RI++ARA+ +D + LLD LD +E+ I + + K+ +T +
Sbjct: 137 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 196
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
++ ++ ++ A+ I++L G G+ +EL N
Sbjct: 197 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 230
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 94.0 bits (232), Expect = 5e-19, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 21/229 (9%)
Query: 1009 IELKNVFFAYPTRPDQMI-LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
I+LKNV Y + + LK ++L I+ G+ V++ G SG GKST + ++ P +G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1068 VFMDE---QDIRNYNLKQLR-SHIALVSQEPTLFAG-TIRENI------AYGKADARESE 1116
V++D D+ + L ++R I V Q+ L T EN+ Y A + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 1117 IKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATS 1176
K+A E + + + QLSGGQ+QR+A+ARA+ NP I+L DE T
Sbjct: 122 RKRALECLKXAEL-------EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTG 174
Query: 1177 ALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223
ALDS + + + L+K+ G+T VVV H ++ + + I +K+G V
Sbjct: 175 ALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 28/178 (15%)
Query: 399 PVEGEVLLDGYKIRRLH----LKWLRSQMGLVNQE----PVLFATSITE-NILFGKDGAS 449
P EGEV +D K L K R ++G V Q+ P+L A E ++F GA
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAX 116
Query: 450 MDD-----VISAAKAANAHD-FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPK 503
+ + K A + F P+ Q+SGGQ+QR+AIARAL +P
Sbjct: 117 SGEERRKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPP 165
Query: 504 ILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKV 559
I+L DE T ALD+++ + + + K+++ G+T +++ H ++ R I+ LK G+V
Sbjct: 166 IILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 113/211 (53%), Gaps = 16/211 (7%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L LSLK+E+G+ ++G +G GK+ + L+ F+ P G + +D +D+ +L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 1087 IALVSQEPTLFAG-TIRENIAYGKADARESEIKKAA-VLANAHEFISGMKDGYDTYCGER 1144
IA V Q +LF +++N+ +G R +IK VL A + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG---MRMKKIKDPKRVLDTARDL------KIEHLLDRN 124
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGR--TCVVV 1202
+ LSGG++QR+ALARA++ NP ILLLDE SALD ++ +E L + T + +
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 1203 AHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232
H + + +D IAV+ +G++++ G E+
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 20/199 (10%)
Query: 390 IALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGA 448
+ L+ F+ P G +LLDG + L + + + V Q LF ++ +N+ FG
Sbjct: 43 LELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100
Query: 449 SMDD---VISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKIL 505
+ D V+ A+ + + P +SGG++QR+A+ARAL+ +PKIL
Sbjct: 101 KIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKIL 149
Query: 506 LLDEATSALDAQSERIVQEAIDKVSKGR--TTLIIAHRLSTIRT-ANLIMVLKAGKVVES 562
LLDE SALD +++ +E + + K T L I H + R A+ I V+ GK+++
Sbjct: 150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 563 GSHNELMNRGEGGEYYQMV 581
G E+ + G V
Sbjct: 210 GKPEEIFEKPVEGRVASFV 228
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 19/226 (8%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072
NV F++ +LK ++L IE G+ +A+ G +G GK++++ L+ G + E
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFI 1130
I++ ++ SQ + GTI+ENI G + + R + KA L + I
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQL---QQDI 143
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA- 1189
+ + +T GE GV LSGGQ+ RI+LARA+ K+ + LLD LD +E V E+
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1190 LEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
+ K+M +T ++V ++ ++K+D I ++ G G+ +EL +L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 249
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 436 SITENILFGKDGASMDDV--ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493
+I ENI+ G S D+ S KA ITK + T +G+ G +SGGQ+ RI+
Sbjct: 114 TIKENII---RGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 494 IARALIRDPKILLLDEATSALDA-QSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIM 552
+ARA+ +D + LLD LD E++ + + K+ +T +++ ++ +R A+ I+
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 553 VLKAGKVVESGSHNEL 568
+L G G+ +EL
Sbjct: 231 ILHQGSSYFYGTFSEL 246
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 19/226 (8%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072
NV F++ +LK ++L IE G+ +A+ G +G GK++++ L+ G + E
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFI 1130
I++ ++ SQ + GTI+ENI G + + R + KA L + I
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQL---QQDI 143
Query: 1131 SGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA- 1189
+ + +T GE GV LSGGQ+ RI+LARA+ K+ + LLD LD +E V E+
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1190 LEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
+ K+M +T ++V ++ ++K+D I ++ G G+ +EL +L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 249
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 436 SITENILFGKDGASMDDV--ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493
+I ENI+ G S D+ S KA ITK + T +G+ G +SGGQ+ RI+
Sbjct: 114 TIKENII---SGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 494 IARALIRDPKILLLDEATSALDA-QSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIM 552
+ARA+ +D + LLD LD E++ + + K+ +T +++ ++ +R A+ I+
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 553 VLKAGKVVESGSHNEL 568
+L G G+ +EL
Sbjct: 231 ILHQGSSYFYGTFSEL 246
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+LK ++ KIE G+ +A+ G +G GK++++ ++ +P +G + +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
I+ SQ + GTI+ENI G + + R + KA L E IS + + GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQL---EEDISKFAEKDNIVLGE 156
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVV 1202
G+ LSGGQ+ RI+LARA+ K+ + LLD LD ++E + + + K+M +T ++V
Sbjct: 157 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 1203 AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
++ ++K+D I ++ G G+ +EL L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSELQNL 249
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 31/247 (12%)
Query: 360 TLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL+ +N ++ + + ++ +P EG++ G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANAHDFITKLPDGYETQV 477
++ +Q + +I ENI+ G S D+ S KA + I+K + +
Sbjct: 100 --RISFCSQFSWIMPGTIKENII---AGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 154
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTL 536
G+ G +SGGQ+ RI++ARA+ +D + LLD LD +E+ I + + K+ +T +
Sbjct: 155 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 214
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASENDTSNDT 596
++ ++ ++ A+ I++L G G+ +EL N LQ S D+
Sbjct: 215 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQN------------LQPDFSSKLMGCDS 262
Query: 597 FNDFSHQ 603
F+ FS +
Sbjct: 263 FDQFSAE 269
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 18/225 (8%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072
++FF+ + +LK ++ KIE G+ +A+ G +G GK++++ ++ +P +G +
Sbjct: 40 SLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---- 95
Query: 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADA-RESEIKKAAVLANAHEFIS 1131
+ I+ SQ + GTI+ENI D R + KA L E IS
Sbjct: 96 ---------KHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQL---EEDIS 143
Query: 1132 GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEAL 1190
+ + GE G+ LSGGQ+ RI+LARA+ K+ + LLD LD ++E + + +
Sbjct: 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
K+M +T ++V ++ ++K+D I ++ G G+ +EL L
Sbjct: 204 CKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 20/224 (8%)
Query: 350 VYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGY 409
++F S T VL+ +N ++ + + ++ +P EG++ G
Sbjct: 41 LFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG- 99
Query: 410 KIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANAHDFIT 467
++ +Q + +I ENI+ G S D+ S KA + I+
Sbjct: 100 ------------RISFCSQNSWIMPGTIKENII----GVSYDEYRYRSVIKACQLEEDIS 143
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAI 526
K + +G+ G +SGGQ+ RI++ARA+ +D + LLD LD +E+ I + +
Sbjct: 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 527 DKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
K+ +T +++ ++ ++ A+ I++L G G+ +EL N
Sbjct: 204 CKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)
Query: 1007 GRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
G++ +K++ Y T IL+ +S I G+ V L+G++G GKST++ R + +G
Sbjct: 18 GQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 1067 SVFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
+ +D + L+Q R ++ Q+ +F+GT R+N+ A + + EI K A
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHS-DQEIWKVADEVGL 134
Query: 1127 HEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLV 1186
I D + G LS G KQ + LAR++L ILLLDE ++ LD V+ ++
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 1187 QEALEKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
+ L++ T ++ R+ + + D VI+ +V + S EL
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 3/171 (1%)
Query: 401 EGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMD-DVISAAKA 459
EGE+ +DG + L+ R G++ Q+ +F+ + +N+ + A D ++ A
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL--DPNAAHSDQEIWKVADE 131
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
I + P + + G +S G KQ + +AR+++ KILLLDE ++ LD +
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 520 RIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
+I++ + + T ++ R+ + + +V++ KV + S EL +
Sbjct: 192 QIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 23/230 (10%)
Query: 1009 IELKNVFFAYPTRPDQMI--LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
I+LKNV Y +++I LK ++L I+ G+ V+++G SG GKST++ ++ P +G
Sbjct: 2 IKLKNVTKTYKM-GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1067 SVFMDE---QDIRNYNLKQLR-SHIALVSQEPTLFAG-TIRENI------AYGKADARES 1115
V++D D+ + L ++R I V Q+ L T EN+ Y A + E
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
K+A E + + + QLSGGQ+QR+A+ARA+ NP I+L D+ T
Sbjct: 121 RRKRALECLKMAEL-------EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173
Query: 1176 SALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223
ALDS + + + L+K+ G+T VVV H ++ + + I +K+G V
Sbjct: 174 GALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 399 PVEGEVLLDGYKIRRLH----LKWLRSQMGLVNQE----PVLFATSITENILFGKDGASM 450
P EGEV +D K L K R ++G V Q+ P+L A E L K +M
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM 116
Query: 451 DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
+A K+ + E Q+SGGQ+QR+AIARAL +P I+L D+
Sbjct: 117 SGEERRKRALEC----LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 511 TSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKV 559
T ALD+++ + + + K+++ G+T +++ H ++ R I+ LK G+V
Sbjct: 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 121/233 (51%), Gaps = 13/233 (5%)
Query: 1007 GRIELKNV--FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
GRIE+ NV F T ++ L+ +SL I G+ + + G +G GKST++ ++ +P
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADARESEIKKAAV 1122
G V D + + Y ++R +I + Q P FA + + +A+ + +
Sbjct: 63 SGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPL 118
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
+ A EF+ G+ +D++ LSGG+K+R+A+A I+ P IL+LDE LD
Sbjct: 119 VKKAMEFV-GLD--FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 175
Query: 1183 ESLVQEALEK-MMMGRTCVVVAHRLST-IQKSDTIAVIKNGRVVEQGSHNELV 1233
++ + +EK +G+T ++++H + T I D + V++ G+ V G+ E +
Sbjct: 176 KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 228
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 388 TTIALLQRFYDPVEGEVLLDG-----YKIRRLHLKWLRSQMGLVNQEP--VLFATSITEN 440
T + ++ +P G+VL DG Y+IRR +G+ Q P FA + +
Sbjct: 50 TLLQIVAGLIEPTSGDVLYDGERKKGYEIRR--------NIGIAFQYPEDQFFAERVFDE 101
Query: 441 ILFGKDGASMD-DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499
+ F D D + K A +F+ D ++ +V F +SGG+K+R+AIA ++
Sbjct: 102 VAFAVKNFYPDRDPVPLVK--KAMEFVGLDFDSFKDRVP---FFLSGGEKRRVAIASVIV 156
Query: 500 RDPKILLLDEATSALDAQSERIVQEAIDK-VSKGRTTLIIAHRLST-IRTANLIMVLKAG 557
+P IL+LDE LD + + + ++K + G+T ++I+H + T I + ++VL+ G
Sbjct: 157 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 216
Query: 558 KVVESGSHNELMNR 571
K V G+ E + +
Sbjct: 217 KKVFDGTRMEFLEK 230
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 18/212 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+LK ++ KIE G+ +A+ G +G GK++++ ++ +P +G + +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKADA-RESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
I+ SQ + GTI+ENI D R + KA L E IS + + GE
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQL---EEDISKFAEKDNIVLGEG 156
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVVA 1203
G+ LSGGQ+ RI+LARA+ K+ + LLD LD ++E + + + K+M +T ++V
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 1204 HRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
++ ++K+D I ++ G G+ +EL L
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQNL 248
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 360 TLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL+ +N ++ + + ++ +P EG++ G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANAHDFITKLPDGYETQV 477
++ +Q + +I ENI+ G S D+ S KA + I+K + +
Sbjct: 100 --RISFCSQNSWIMPGTIKENII----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTL 536
G+ G +SGGQ+ RI++ARA+ +D + LLD LD +E+ I + + K+ +T +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
++ ++ ++ A+ I++L G G+ +EL N
Sbjct: 214 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 1013 NVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDE 1072
NV F++ +LK ++L IE G+ +A+ G +G GK++++ L+ G + E
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI-------LGELEASE 92
Query: 1073 QDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADA-RESEIKKAAVLANAHEFIS 1131
I++ ++ SQ + GTI+ENI D R + KA L + I+
Sbjct: 93 GIIKH------SGRVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQL---QQDIT 143
Query: 1132 GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA-L 1190
+ +T GE GV LSGGQ+ RI+LARA+ K+ + LLD LD +E V E+ +
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
K+M +T ++V ++ ++K+D I ++ G G+ +EL +L
Sbjct: 204 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 248
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 436 SITENILFGKDGASMDDV--ISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIA 493
+I ENI+ G S D+ S KA ITK + T +G+ G +SGGQ+ RI+
Sbjct: 114 TIKENII----GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 169
Query: 494 IARALIRDPKILLLDEATSALDA-QSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANLIM 552
+ARA+ +D + LLD LD E++ + + K+ +T +++ ++ +R A+ I+
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 229
Query: 553 VLKAGKVVESGSHNEL 568
+L G G+ +EL
Sbjct: 230 ILHQGSSYFYGTFSEL 245
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 23/230 (10%)
Query: 1009 IELKNVFFAYPTRPDQMI--LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKG 1066
++LKNV Y +++I LK ++L I+ G+ V+++G SG GKST++ ++ P +G
Sbjct: 2 VKLKNVTKTYKM-GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1067 SVFMDE---QDIRNYNLKQLR-SHIALVSQEPTLFAG-TIRENI------AYGKADARES 1115
V++D D+ + L ++R I V Q+ L T EN+ Y A + E
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
K+A E + + + QLSGGQ+QR+A+ARA+ NP I+L D+ T
Sbjct: 121 RRKRALECLKMAEL-------EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173
Query: 1176 SALDSVSESLVQEALEKMMM--GRTCVVVAHRLSTIQKSDTIAVIKNGRV 1223
ALDS + + + L+K+ G+T VVV H ++ + + I +K+G V
Sbjct: 174 WALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 399 PVEGEVLLDGYKIRRLH----LKWLRSQMGLVNQE----PVLFATSITENILFGKDGASM 450
P EGEV +D K L K R ++G V Q+ P+L A E L K +M
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM 116
Query: 451 DDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEA 510
+A K+ + E Q+SGGQ+QR+AIARAL +P I+L D+
Sbjct: 117 SGEERRKRALEC----LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 511 TSALDAQSERIVQEAIDKVSK--GRTTLIIAHRLSTIRTANLIMVLKAGKV 559
T ALD+++ + + + K+++ G+T +++ H ++ R I+ LK G+V
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 18/212 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+LK ++ KIE G+ +A+ G +G GK++++ ++ +P +G + +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 69
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKADA-RESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
I+ SQ + GTI+ENI D R + KA L E IS + + GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQL---EEDISKFAEKDNIVLGEG 126
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVVA 1203
G+ LSGGQ+ RI+LARA+ K+ + LLD LD ++E + + + K+M +T ++V
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 1204 HRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
++ ++K+D I ++ G G+ +EL L
Sbjct: 187 SKMEHLKKADKILILHEGSSYFYGTFSELQNL 218
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 360 TLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL+ +N ++ + + ++ +P EG++ G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANAHDFITKLPDGYETQV 477
++ +Q + +I ENI+ G S D+ S KA + I+K + +
Sbjct: 70 --RISFCSQFSWIMPGTIKENII----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 123
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTL 536
G+ G +SGGQ+ RI++ARA+ +D + LLD LD +E+ I + + K+ +T +
Sbjct: 124 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
++ ++ ++ A+ I++L G G+ +EL N
Sbjct: 184 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 217
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 89.4 bits (220), Expect = 1e-17, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 13/232 (5%)
Query: 1008 RIELKNV--FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLK 1065
RIE+ NV F T ++ L+ +SL I G+ + + G +G GKST++ ++ +P
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1066 GSVFMDEQDIRNYNLKQLRSHIALVSQEP--TLFAGTIRENIAYGKADARESEIKKAAVL 1123
G V D + + Y ++R +I + Q P FA + + +A+ + ++
Sbjct: 62 GDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLV 117
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
A EF+ G+ +D++ LSGG+K+R+A+A I+ P IL+LDE LD +
Sbjct: 118 KKAMEFV-GLD--FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 1184 SLVQEALEK-MMMGRTCVVVAHRLST-IQKSDTIAVIKNGRVVEQGSHNELV 1233
+ + +EK +G+T ++++H + T I D + V++ G+ V G+ E +
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 388 TTIALLQRFYDPVEGEVLLDG-----YKIRRLHLKWLRSQMGLVNQEP--VLFATSITEN 440
T + ++ +P G+VL DG Y+IRR +G+ Q P FA + +
Sbjct: 48 TLLQIVAGLIEPTSGDVLYDGERKKGYEIRR--------NIGIAFQYPEDQFFAERVFDE 99
Query: 441 ILFGKDGASMD-DVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALI 499
+ F D D + K A +F+ D ++ +V F +SGG+K+R+AIA ++
Sbjct: 100 VAFAVKNFYPDRDPVPLVK--KAMEFVGLDFDSFKDRVP---FFLSGGEKRRVAIASVIV 154
Query: 500 RDPKILLLDEATSALDAQSERIVQEAIDK-VSKGRTTLIIAHRLST-IRTANLIMVLKAG 557
+P IL+LDE LD + + + ++K + G+T ++I+H + T I + ++VL+ G
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214
Query: 558 KVVESGSHNELMNR 571
K V G+ E + +
Sbjct: 215 KKVFDGTRMEFLEK 228
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+LK ++ KIE G+ +A+ G +G GK++++ ++ +P +G + +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKA--DARESEIKKAAVLANAHEFISGMKDGYDTYCGE 1143
I+ SQ + GTI+ENI +G + + R + KA L E IS + + GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL---EEDISKFAEKDNIVLGE 156
Query: 1144 RGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVV 1202
G+ LS GQ+ +I+LARA+ K+ + LLD LD ++E + + + K+M +T ++V
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 1203 AHRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
++ ++K+D I ++ G G+ +EL L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSELQNL 249
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 98/214 (45%), Gaps = 19/214 (8%)
Query: 360 TLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL+ +N ++ + + ++ +P EG++ G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANAHDFITKLPDGYETQV 477
++ +Q + +I ENI+FG S D+ S KA + I+K + +
Sbjct: 100 --RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 154
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTL 536
G+ G +S GQ+ +I++ARA+ +D + LLD LD +E+ I + + K+ +T +
Sbjct: 155 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 214
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
++ ++ ++ A+ I++L G G+ +EL N
Sbjct: 215 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 248
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 113/213 (53%), Gaps = 23/213 (10%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIAL 1089
L+L I+ G+ + L+G SGCGK+T + ++ +P +G ++ ++D+ K +I++
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 88
Query: 1090 VSQEPTLFAG-TIRENIAYG------KADARESEIKKAAVLANAHEFISGMKDGYDTYCG 1142
V Q ++ T+ ENIA+ D + ++ AA L E ++
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN----------- 137
Query: 1143 ERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCV 1200
QLSGGQ+QR+A+ARAI+ P +LL+DE S LD+ ++ ++K+ + T +
Sbjct: 138 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 1201 VVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
V H ++ + D IAV+ G++++ GS E+
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGR--TTLIIAH 540
Q+SGGQ+QR+A+ARA++ +P +LL+DE S LDA+ ++ I K+ + TT+ + H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 541 -RLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
++ + + I V+ G++++ GS E+ R
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 233
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 116/218 (53%), Gaps = 21/218 (9%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI--RNYNLKQL 1083
+L +SL ++ G+ + ++G SGCGK+T++ L F P G + + + I +N NL
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 1084 RSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKD--GYDTY 1140
+ + QE LF T+ NIAYG + + A + I M + G
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-------GRTAQERQRIEAMLELTGISEL 131
Query: 1141 CGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM----- 1195
G +LSGGQ+QR ALARA+ +P ++LLDE SALD E L ++ E M+
Sbjct: 132 AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD---EQLRRQIREDMIAALRAN 188
Query: 1196 GRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
G++ V V+H R +Q +D IAV+K GR+++ S +EL
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 15/189 (7%)
Query: 388 TTIALLQRFYDPVEGEVLLDGYKI--RRLHLKWLRSQMGLVNQEPVLFAT-SITENILFG 444
T + L F P GE+ L G I + +L ++G + QE VLF ++ NI +G
Sbjct: 45 TLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104
Query: 445 KDGASMDDVISAAKAANAHDFITKLPD--GYETQVGQLGFQMSGGQKQRIAIARALIRDP 502
+ A I + + G G+ ++SGGQ+QR A+ARAL DP
Sbjct: 105 LGNGK-------GRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP 157
Query: 503 KILLLDEATSALDAQSERIVQEAIDKV--SKGRTTLIIAH-RLSTIRTANLIMVLKAGKV 559
+++LLDE SALD Q R ++E + + G++ + ++H R ++ A+ I V+K G++
Sbjct: 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRI 217
Query: 560 VESGSHNEL 568
+++ S +EL
Sbjct: 218 LQTASPHEL 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 113/213 (53%), Gaps = 23/213 (10%)
Query: 1030 LSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIAL 1089
L+L I+ G+ + L+G SGCGK+T + ++ +P +G ++ ++D+ K +I++
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 87
Query: 1090 VSQEPTLFAG-TIRENIAYG------KADARESEIKKAAVLANAHEFISGMKDGYDTYCG 1142
V Q ++ T+ ENIA+ D + ++ AA L E ++
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN----------- 136
Query: 1143 ERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM--MGRTCV 1200
QLSGGQ+QR+A+ARAI+ P +LL+DE S LD+ ++ ++K+ + T +
Sbjct: 137 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 1201 VVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
V H ++ + D IAV+ G++++ GS E+
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGR--TTLIIAH 540
Q+SGGQ+QR+A+ARA++ +P +LL+DE S LDA+ ++ I K+ + TT+ + H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 541 -RLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
++ + + I V+ G++++ GS E+ R
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 19/231 (8%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
RIEL +V F Y +LK ++ + E GK +VG++G GK+T++ +L G
Sbjct: 11 RIELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGE 66
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPT--LFAGTIRENIAYGKA--DARESEIKKAAVL 1123
+F+D + LR ++ V Q P+ + T+ E++A+ ESE++K +
Sbjct: 67 IFLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKR--I 121
Query: 1124 ANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE 1183
E + G + LSGGQKQR+A+A + ++ L LDE S LD S+
Sbjct: 122 KKVLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 1184 SLVQEALEKMM-MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233
+ + LE + G+ ++V H L + D I I NG + GS E V
Sbjct: 177 REIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFV 227
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 402 GEVLLDGYKIRRLHLKWLRSQMGLVNQEPV--LFATSITENILFGKDGASMDDVISAAKA 459
GE+ LDG LR +G V Q P + ++ E++ F + +D+ +
Sbjct: 65 GEIFLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRI 121
Query: 460 ANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+ + G +SGGQKQR+AIA L RD + L LDE S LD S+
Sbjct: 122 KKVLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 520 RIVQEAIDKV-SKGRTTLIIAHRLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
R + + ++ + ++G+ +++ H L + + I+ + G + GS E + R
Sbjct: 177 REIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
+LK ++ KIE G+ +A+ G +G GK++++ ++ +P +G + +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSG 99
Query: 1086 HIALVSQEPTLFAGTIRENIAYGKADA-RESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
I+ SQ + GTI+ENI D R + KA L E IS + + GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQL---EEDISKFAEKDNIVLGEG 156
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSE-SLVQEALEKMMMGRTCVVVA 1203
G+ LS GQ+ +I+LARA+ K+ + LLD LD ++E + + + K+M +T ++V
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 1204 HRLSTIQKSDTIAVIKNGRVVEQGSHNELVAL 1235
++ ++K+D I ++ G G+ +EL L
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQNL 248
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 20/214 (9%)
Query: 360 TLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL 419
T VL+ +N ++ + + ++ +P EG++ G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 420 RSQMGLVNQEPVLFATSITENILFGKDGASMDDVI--SAAKAANAHDFITKLPDGYETQV 477
++ +Q + +I ENI+ G S D+ S KA + I+K + +
Sbjct: 100 --RISFCSQFSWIMPGTIKENII----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 478 GQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSER-IVQEAIDKVSKGRTTL 536
G+ G +S GQ+ +I++ARA+ +D + LLD LD +E+ I + + K+ +T +
Sbjct: 154 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 537 IIAHRLSTIRTANLIMVLKAGKVVESGSHNELMN 570
++ ++ ++ A+ I++L G G+ +EL N
Sbjct: 214 LVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 13/218 (5%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDI----RNY 1078
D +K LSL+I+ G+ + L+G SGCGK+T + + +P +G +++++ + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1079 NLKQLRSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGY 1137
+ +A V Q L+ T+ +NIA+ + ++ K + E + G
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAF---PLKLRKVPKQEIDKRVREVAEXL--GL 132
Query: 1138 DTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM--MM 1195
+ +LSGGQ+QR+AL RAI++ P + L DE S LD+ + L+K+ +
Sbjct: 133 TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL 192
Query: 1196 GRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
G T + V H ++ D IAV G + + G+ +E+
Sbjct: 193 GVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 57.0 bits (136), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAH 540
++SGGQ+QR+A+ RA+IR PK+ L DE S LDA+ + + K+ + G TT+ + H
Sbjct: 142 ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTH 201
Query: 541 -RLSTIRTANLIMVLKAGKVVESGSHNEL 568
++ + I V G++ + G+ +E+
Sbjct: 202 DQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 114/214 (53%), Gaps = 13/214 (6%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYN----LKQ 1082
++ +SL+++ G+ + L+G SGCGK+T + ++ +P +G +++ ++ + + +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 1083 LRSHIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYC 1141
IA+V Q L+ T+ +NIA+ + ++ + + E + G
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAF---PLKLRKVPRQEIDQRVREVAELL--GLTELL 133
Query: 1142 GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM--MMGRTC 1199
+ +LSGGQ+QR+AL RAI++ P + L+DE S LD+ ++ L+K+ +G T
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193
Query: 1200 VVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
+ V H ++ + D IAV+ G + + GS +E+
Sbjct: 194 IYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GRTTLIIAH 540
++SGGQ+QR+A+ RA++R P++ L+DE S LDA+ ++ + K+ + G TT+ + H
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 541 -RLSTIRTANLIMVLKAGKVVESGSHNELMNR 571
++ + + I V+ G + + GS +E+ ++
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 28/235 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L+NV A+ + ++ K ++L I G+ V VG SGCGKST++ ++ G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGK--ADARESEIKK-----A 1120
F+ E+ R + + +V Q L+ ++ EN+++G A A++ I + A
Sbjct: 61 FIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
VL AH + LSGGQ+QR+A+ R ++ PS+ LLDE S LD+
Sbjct: 119 EVLQLAH------------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 1181 VSESLVQEALEKMM--MGRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
++ + ++ +GRT + V H ++ + +D I V+ GRV + G EL
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 21/156 (13%)
Query: 423 MGLVNQEPVLFAT-SITENILFG-KDGASMDDVIS-----AAKAANAHDFITKLPDGYET 475
+G+V Q L+ S+ EN+ FG K + +VI+ A+ + + P
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA--- 133
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GR 533
+SGGQ+QR+AI R L+ +P + LLDE S LDA ++ I ++ K GR
Sbjct: 134 --------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 534 TTLIIAH-RLSTIRTANLIMVLKAGKVVESGSHNEL 568
T + + H ++ + A+ I+VL AG+V + G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 28/235 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L+NV A+ + ++ K ++L I G+ V VG SGCGKST++ ++ G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGK--ADARESEIKK-----A 1120
F+ E+ R + + +V Q L+ ++ EN+++G A A++ I + A
Sbjct: 61 FIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
VL AH + LSGGQ+QR+A+ R ++ PS+ LLDE S LD+
Sbjct: 119 EVLQLAH------------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 1181 VSESLVQEALEKMM--MGRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
++ + ++ +GRT + V H ++ + +D I V+ GRV + G EL
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 21/156 (13%)
Query: 423 MGLVNQEPVLFAT-SITENILFG-KDGASMDDVIS-----AAKAANAHDFITKLPDGYET 475
+G+V Q L+ S+ EN+ FG K + +VI+ A+ + + P
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA--- 133
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GR 533
+SGGQ+QR+AI R L+ +P + LLDE S LDA ++ I ++ K GR
Sbjct: 134 --------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 534 TTLIIAH-RLSTIRTANLIMVLKAGKVVESGSHNEL 568
T + + H ++ + A+ I+VL AG+V + G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 14/214 (6%)
Query: 1030 LSLKIEAGKT-VALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIA 1088
L++ E G+ L+G +G GKS + L+ P +G V ++ DI L R I
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIG 73
Query: 1089 LVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ 1147
V Q+ LF ++ NIAYG + E + I+ + D + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-------RKPAR 126
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALE--KMMMGRTCVVVAHR 1205
LSGG++QR+ALARA++ P +LLLDE SA+D ++ ++ E L + + V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 1206 L-STIQKSDTIAVIKNGRVVEQGSHNELVALSRG 1238
L +D +AV+ NGR+VE+G EL + G
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
Score = 63.5 bits (153), Expect = 8e-10, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 15/194 (7%)
Query: 390 IALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKDGA 448
+ L+ P GEV L+G I L + R +G V Q+ LF S+ NI +G
Sbjct: 41 LELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYG---- 94
Query: 449 SMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLD 508
+ +V + + KL G + + ++SGG++QR+A+ARAL+ P++LLLD
Sbjct: 95 -LRNVERVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 509 EATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTIRTANL---IMVLKAGKVVESGSH 565
E SA+D +++ ++ E + V + I+ I A L + V+ G++VE G
Sbjct: 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211
Query: 566 NELMN--RGEGGEY 577
EL + GE E+
Sbjct: 212 KELFSAKNGEVAEF 225
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 29/240 (12%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
RI +KNV + + + L +++ IE G+ ++G SG GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1068 VFMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARES--EIKK-- 1119
++ D++ + + + I +V Q L+ T ENIA+ + + S EI+K
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1120 --AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
A + + H ++ +LSGGQ+QR+ALARA++K+PS+LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1178 LDS----VSESLVQEALEKMMMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
LD+ + +LV+E + +G T +VV+H + I +D + V+ G++V+ G +L
Sbjct: 171 LDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 21/159 (13%)
Query: 422 QMGLVNQEPVLFAT-SITENILFGKDGASMDD------VISAAKAANAHDFITKLPDGYE 474
++G+V Q L+ + ENI F M V AK + H + P
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR--- 139
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--G 532
++SGGQ+QR+A+ARAL++DP +LLLDE S LDA+ + + +V G
Sbjct: 140 --------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 533 RTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMN 570
T L+++H + I A+ + VL GK+V+ G +L +
Sbjct: 192 VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 28/235 (11%)
Query: 1009 IELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV 1068
++L+NV A+ + ++ K ++L I G+ V VG SGCGKST++ ++ G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 1069 FMDEQDIRNYNLKQLRSHIALVSQEPTLFAG-TIRENIAYGK--ADARESEIKK-----A 1120
F+ E+ R + + +V Q L+ ++ EN+++G A A++ I + A
Sbjct: 61 FIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 1121 AVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDS 1180
VL AH + LSGGQ+QR+A+ R ++ PS+ LLD+ S LD+
Sbjct: 119 EVLQLAH------------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 1181 VSESLVQEALEKMM--MGRTCVVVAH-RLSTIQKSDTIAVIKNGRVVEQGSHNEL 1232
++ + ++ +GRT + V H ++ + +D I V+ GRV + G EL
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 21/156 (13%)
Query: 423 MGLVNQEPVLFAT-SITENILFG-KDGASMDDVIS-----AAKAANAHDFITKLPDGYET 475
+G+V Q L+ S+ EN+ FG K + +VI+ A+ + + P
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA--- 133
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--GR 533
+SGGQ+QR+AI R L+ +P + LLD+ S LDA ++ I ++ K GR
Sbjct: 134 --------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 534 TTLIIAH-RLSTIRTANLIMVLKAGKVVESGSHNEL 568
T + + H ++ + A+ I+VL AG+V + G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 125/260 (48%), Gaps = 44/260 (16%)
Query: 1029 GLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDP----LKGSVFMDEQDI---RNYNLK 1081
G+SL I A+VG+S GKSTII + + P L G V +D+ R L+
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 1082 QLR-SHIALVSQ------EPTL-----FAGTIRENIAYGKADARESEIKKAAVLANAHEF 1129
++R IALV Q PT+ F T+ A+G + I+KA+ E
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVE---AHGVRWSHSELIEKAS------EK 136
Query: 1130 ISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA 1189
+ ++ + +QLSGG KQR+ +A A+L +P +L+LDE TSALD ++++ + +
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQL 196
Query: 1190 LEKMMMGR--TCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS-----HNELVALSRG--- 1238
L+++ T + V H ++ + +D +AVI G +VE S N L +RG
Sbjct: 197 LKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTRGLIN 256
Query: 1239 -----GAYYSLIKPQGGSSP 1253
A S +KP G P
Sbjct: 257 SIMAVNADMSKVKPIPGDPP 276
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 474 ETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE-RIVQEAIDKVSKG 532
E + Q+SGG KQR+ IA AL+ DP +L+LDE TSALD ++ I+Q +
Sbjct: 145 EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKML 204
Query: 533 RTTLI-IAHRLST-IRTANLIMVLKAGKVVESGS 564
+ TLI + H ++ A+ + V+ G +VE S
Sbjct: 205 KITLIFVTHDIAVAAELADKVAVIYGGNLVEYNS 238
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 43/231 (18%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR--------- 1076
+LKG+SL+ AG ++++G SG GKST + + P +G++ ++ Q+I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1077 ----NYNLKQLRSHIALVSQEPTLFAG-TIRENI--------AYGKADARESEIKKAAVL 1123
L+ LR+ + +V Q L++ T+ EN+ K DARE +K A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA-- 138
Query: 1124 ANAHEFISGMKDGYDTYC-GERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
K G D G+ V LSGGQ+QR+++ARA+ P +LL DE TSALD
Sbjct: 139 ----------KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP-- 186
Query: 1183 ESLVQEALEKMMM----GRTCVVVAHRLSTIQK-SDTIAVIKNGRVVEQGS 1228
LV E L M G+T VVV H + + S + + G++ E+G
Sbjct: 187 -ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 31/225 (13%)
Query: 362 VLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIR--------- 412
VL+G++L+ A T + + P EG ++++G I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 413 ----RLHLKWLRSQMGLVNQEPVLFA-TSITENILFGKD---GASMDDVISAAKAANAHD 464
+ L+ LR+++ +V Q L++ ++ EN++ G S D A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA-----RERALK 135
Query: 465 FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALD----AQSER 520
++ K+ Q G+ +SGGQ+QR++IARAL +P +LL DE TSALD + R
Sbjct: 136 YLAKVGIDERAQ-GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 194
Query: 521 IVQEAIDKVSKGRTTLIIAHRLSTIR-TANLIMVLKAGKVVESGS 564
I+Q+ + +G+T +++ H + R ++ ++ L GK+ E G
Sbjct: 195 IMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 21/210 (10%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL-- 1083
ILKG+SL ++ G+ V+++G SG GKST++ +L P +G VF++ +++ N K+L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1084 --RSHIALVSQ------EPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKD 1135
+ V Q E T I + GK +E++ + +L+
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPK-KEAKERGEYLLSEL--------- 128
Query: 1136 GYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
G + +LSGG++QR+A+ARA+ P +L DE T LDS + V + K+
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 1196 GRTCVV-VAHRLSTIQKSDTIAVIKNGRVV 1224
G T +V V H + + +K+G+VV
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVV 218
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 11/205 (5%)
Query: 362 VLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKI---RRLHLKW 418
+L+G++L V T + +L P EG+V L+G ++ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 419 LRS-QMGLVNQEPVLFAT-SITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQ 476
LR+ ++G V Q L + EN++ M AK + +++L G +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPM--LKMGKPKKEAKERGEY-LLSEL--GLGDK 133
Query: 477 VGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTL 536
+ + +++SGG++QR+AIARAL +P +L DE T LD+ + + V + K+++G T++
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193
Query: 537 I-IAHRLSTIRTANLIMVLKAGKVV 560
+ + H + + +K GKVV
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L G+S+ + G ++G +G GKST+I ++ F +G V+ + +DI N +L +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1087 -IALVSQEPT-LFAGTIRENIAYGKADARESEI----------KKAAVLANAHEFISGMK 1134
I Q P L T+ EN+ G+ + ES + K+ ++ A + + +K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1135 DG--YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL-DSVSESLVQEALE 1191
YD GE LSGGQ + + + RA++ NP ++++DE + + ++ + LE
Sbjct: 143 LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 1192 KMMMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQGSHNE 1231
G T +++ HRL + D + V+ NG+++ +G E
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL-DAQSERIVQEAI 526
KL Y+ + G+L SGGQ + + I RAL+ +PK++++DE + + + I +
Sbjct: 142 KLSHLYDRKAGEL----SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 527 DKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNE 567
+ +KG T LII HRL + + + V+ G+++ G E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L G+S+ + G ++G +G GKST+I ++ F +G V+ + +DI N +L +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1087 -IALVSQEPT-LFAGTIRENIAYGKADARESEI----------KKAAVLANAHEFISGMK 1134
I Q P L T+ EN+ G+ + ES + K+ ++ A + + +K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1135 DG--YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL-DSVSESLVQEALE 1191
YD GE LSGGQ + + + RA++ NP ++++D+ + + ++ + LE
Sbjct: 143 LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE 198
Query: 1192 KMMMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQGSHNE 1231
G T +++ HRL + D + V+ NG+++ +G E
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL-DAQSERIVQEAI 526
KL Y+ + G+L SGGQ + + I RAL+ +PK++++D+ + + + I +
Sbjct: 142 KLSHLYDRKAGEL----SGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 527 DKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNE 567
+ +KG T LII HRL + + + V+ G+++ G E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 29/240 (12%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
RI +KNV + + + L +++ IE G+ ++G SG GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1068 VFMDEQDIRNYN---LKQLRSHIALVSQEPTLFAG-TIRENIAYGKADARES--EIKK-- 1119
++ D++ + + + I +V Q L+ T ENIA+ + + S EI+K
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1120 --AAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSA 1177
A + + H ++ +LSG Q+QR+ALARA++K+PS+LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1178 LDS----VSESLVQEALEKMMMGRTCVVVAHRLSTI-QKSDTIAVIKNGRVVEQGSHNEL 1232
LD+ + +LV+E + +G T +VV+H + I +D + V+ G++V+ G +L
Sbjct: 171 LDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 422 QMGLVNQEPVLFAT-SITENILFGKDGASMDD------VISAAKAANAHDFITKLPDGYE 474
++G+V Q L+ + ENI F M V AK + H + P
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR--- 139
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK--G 532
++SG Q+QR+A+ARAL++DP +LLLDE S LDA+ + + +V G
Sbjct: 140 --------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 533 RTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNELMN 570
T L+++H + I A+ + VL GK+V+ G +L +
Sbjct: 192 VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L G+S+ + G ++G +G GKST+I ++ F +G V+ + +DI N +L +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1087 -IALVSQEPT-LFAGTIRENIAYGKADARESEI----------KKAAVLANAHEFISGMK 1134
I Q P L T+ EN+ G+ ES + K+ ++ A + + +K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 1135 DG--YDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSAL-DSVSESLVQEALE 1191
YD GE LSGGQ + + + RA++ NP ++++DE + + ++ + LE
Sbjct: 143 LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 1192 KMMMGRTCVVVAHRLSTIQKS-DTIAVIKNGRVVEQGSHNE 1231
G T +++ HRL + D + V+ NG+++ +G E
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 468 KLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSAL-DAQSERIVQEAI 526
KL Y+ + G+L SGGQ + + I RAL+ +PK++++DE + + + I +
Sbjct: 142 KLSHLYDRKAGEL----SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 527 DKVSKGRTTLIIAHRLSTI-RTANLIMVLKAGKVVESGSHNE 567
+ +KG T LII HRL + + + V+ G+++ G E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 9/211 (4%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL-RS 1085
+KG+ LK+ G+ V L+G +G GK+T + + KG + + QDI N + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 1086 HIALVSQEPTLFAG-TIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGER 1144
IALV + +F T+ EN+ G + ++ E K + E+I + +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDL-----EWIFSLFPRLKERLKQL 136
Query: 1145 GVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAH 1204
G LSGG++Q +A+ RA+ P +L DE + L + S V E ++K+ T +++
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 1205 R--LSTIQKSDTIAVIKNGRVVEQGSHNELV 1233
+ L ++ + V++ G++V +G +EL+
Sbjct: 197 QNALGALKVAHYGYVLETGQIVLEGKASELL 227
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 21/218 (9%)
Query: 363 LQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGEVLLDGYKIRRLHLKWL-RS 421
++G++L+VP TT++ + +G+++ +G I + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 422 QMGLVNQEPVLFAT-SITENILFG------KDGASMDDVISAAKAANAHDFITKLPDGYE 474
+ LV + +F ++ EN+ G K+G D ++I L +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRD-----------LEWIFSLFPRLK 130
Query: 475 TQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRT 534
++ QLG +SGG++Q +AI RAL PK+L DE + L V E I K+++ T
Sbjct: 131 ERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 535 TLIIAHR--LSTIRTANLIMVLKAGKVVESGSHNELMN 570
T+++ + L ++ A+ VL+ G++V G +EL++
Sbjct: 191 TILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 73.6 bits (179), Expect = 8e-13, Method: Composition-based stats.
Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 23/223 (10%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQL 1083
Q ++ +SL I +G+ VA++G +G GKST++ LL + P G + Q++ ++ K L
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83
Query: 1084 RSHIALVSQEPTL-FAGTIRENIAYGKADARESEIKKA--AVLANAHEFISGMKDGYDTY 1140
A++ Q L F ++ E I G+A S+ ++A V+A +D Y
Sbjct: 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRD-YRV- 141
Query: 1141 CGERGVQLSGGQKQRIALARAILK------NPSILLLDEATSALDSVSES----LVQEAL 1190
LSGG++QR+ LAR + + P L LDE TSALD + L+++
Sbjct: 142 -------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194
Query: 1191 EKMMMGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQGSHNELV 1233
+ + CV+ L+ + +D I ++ G++V G+ E++
Sbjct: 195 RQEPLAVCCVLHDLNLAALY-ADRIMLLAQGKLVACGTPEEVL 236
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 388 TTIALLQRFYDPVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVL-FATSITENILFGKD 446
T + LL + P GE L G + K L ++ Q L F S++E I G+
Sbjct: 52 TLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRA 111
Query: 447 --GASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIR---- 500
G S D A D + Y +SGG++QR+ +AR L +
Sbjct: 112 PYGGSQDRQALQQVMAQT-DCLALAQRDYRV--------LSGGEQQRVQLARVLAQLWQP 162
Query: 501 --DPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLI--IAHRLSTIRT-ANLIMVLK 555
P+ L LDE TSALD ++ + ++++ + + H L+ A+ IM+L
Sbjct: 163 QPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA 222
Query: 556 AGKVVESGSHNELMNRGEGGEYYQ 579
GK+V G+ E++N ++YQ
Sbjct: 223 QGKLVACGTPEEVLNAETLTQWYQ 246
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 29/220 (13%)
Query: 1026 ILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRS 1085
ILKG+S +IE G+ L+G +G GK+T + ++ P G V + +++ ++R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 1086 HIALVSQEPTLFAGTIR--ENIAY---------GKADARESEIKKAAVLANAHEFISGMK 1134
I+ + +E AG R + I Y + E +++A +A E I K
Sbjct: 89 LISYLPEE----AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI---K 141
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
D TY S G +++ +ARA++ NP + +LDE TS LD ++ V++ L++
Sbjct: 142 DRVSTY--------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 1195 M-GRTCVVVAHRLSTIQ-KSDTIAVIKNGRVVEQGSHNEL 1232
G T +V +H + ++ D IA+I NG +VE G+ EL
Sbjct: 194 QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 485 SGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSK-GRTTLIIAHRLS 543
S G +++ IARAL+ +P++ +LDE TS LD + R V++ + + S+ G T L+ +H +
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207
Query: 544 TIR-TANLIMVLKAGKVVESGSHNELMNRGEGGEYYQMVELQQMASEN 590
+ + I ++ G +VE+G+ EL R + ++ E SEN
Sbjct: 208 EVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSEN 255
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 28/218 (12%)
Query: 1005 MRGRIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPL 1064
M + ++N+ F Y + + + + L+ + G +A++GQ+GCGKST++ LL + P+
Sbjct: 1 MNKALSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI 58
Query: 1065 KGSVFMDEQDIRNYNLKQLRSHIALVSQE-PTLFAGTIRENIAYGKADARESEIKKAAVL 1123
+G + ++ I V Q + FA ++ + + G R + I A
Sbjct: 59 QGKI-------------EVYQSIGFVPQFFSSPFAYSVLDIVLMG----RSTHINTFAK- 100
Query: 1124 ANAHEFISGMK--DGYD-TYCGERG-VQLSGGQKQRIALARAILKNPSILLLDEATSALD 1179
+H++ M+ D + T+ +R LSGGQ+Q I +ARAI ++LLDE TSALD
Sbjct: 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 1180 SVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTIAV 1217
++ +V L + + VV +T Q + +A+
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVV---FTTHQPNQVVAI 195
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLII 538
+SGGQ+Q I IARA+ + K++LLDE TSALD ++ IV + +++ + ++
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 21/217 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L LS ++ AG+ + LVG +G GKST++ + KGS+ Q + ++ +L H
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 1087 IALVSQEPT-LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
A +SQ+ T FA + + + D +E+ A A D G
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRST 124
Query: 1146 VQLSGGQKQRIALARAILK-----NPS--ILLLDEATSALDSVSESLVQEALEKM-MMGR 1197
QLSGG+ QR+ LA +L+ NP+ +LLLD+ ++LD +S + + L + G
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGL 184
Query: 1198 TCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELV 1233
V+ +H L+ T++ + ++K G+++ G E++
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 27/169 (15%)
Query: 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484
L Q+ FAT + + + + ++++ A A D ++G+ Q+
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD----------DKLGRSTNQL 127
Query: 485 SGGQKQRIAIARALIR-----DP--KILLLDEATSALDAQSERIVQEAIDKV-----SKG 532
SGG+ QR+ +A +++ +P ++LLLD+ ++LD Q A+DK+ +G
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQG 183
Query: 533 RTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580
++ +H L+ T+R A+ +LK GK++ SG E++ + Y M
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGM 232
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 21/217 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L LS ++ AG+ + LVG +G GKST++ + KGS+ Q + ++ +L H
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 1087 IALVSQEPT-LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
A +SQ+ T FA + + + D +E+ A A D G
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRST 124
Query: 1146 VQLSGGQKQRIALARAILK-----NPS--ILLLDEATSALDSVSESLVQEALEKM-MMGR 1197
QLSGG+ QR+ LA +L+ NP+ +LLLD+ +LD +S + + L + G
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGL 184
Query: 1198 TCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELV 1233
V+ +H L+ T++ + ++K G+++ G E++
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 27/169 (15%)
Query: 425 LVNQEPVLFATSITENILFGKDGASMDDVISAAKAANAHDFITKLPDGYETQVGQLGFQM 484
L Q+ FAT + + + + ++++ A A D ++G+ Q+
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD----------DKLGRSTNQL 127
Query: 485 SGGQKQRIAIARALIR-----DP--KILLLDEATSALDAQSERIVQEAIDKV-----SKG 532
SGG+ QR+ +A +++ +P ++LLLD+ +LD Q A+DK+ +G
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQG 183
Query: 533 RTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELMNRGEGGEYYQM 580
++ +H L+ T+R A+ +LK GK++ SG E++ + Y M
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGM 232
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 21/217 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L LS ++ AG+ + LVG +G GKST++ KGS+ Q + ++ +L H
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 1087 IALVSQEPT-LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
A +SQ+ T FA + + + D +E+ A A D G
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRST 124
Query: 1146 VQLSGGQKQRIALARAILK-----NPS--ILLLDEATSALDSVSESLVQEALEKM-MMGR 1197
QLSGG+ QR+ LA +L+ NP+ +LLLDE ++LD +S + + L + G
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGL 184
Query: 1198 TCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELV 1233
V +H L+ T++ + ++K G+ + G E++
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 17/109 (15%)
Query: 474 ETQVGQLGFQMSGGQKQRIAIARALIR-----DP--KILLLDEATSALDAQSERIVQEAI 526
+ ++G+ Q+SGG+ QR+ +A +++ +P ++LLLDE ++LD Q A+
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSAL 172
Query: 527 DKV-----SKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELM 569
DK+ +G + +H L+ T+R A+ +LK GK + SG E++
Sbjct: 173 DKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 21/217 (9%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSH 1086
L LS ++ AG+ + LVG +G GKST++ KGS+ Q + ++ +L H
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 1087 IALVSQEPT-LFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERG 1145
A +SQ+ T FA + + + D +E+ A A D G
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRST 124
Query: 1146 VQLSGGQKQRIALARAILK-----NPS--ILLLDEATSALDSVSESLVQEALEKM-MMGR 1197
QLSGG+ QR+ LA +L+ NP+ +LLLDE ++LD +S + + L + G
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGL 184
Query: 1198 TCVVVAHRLS-TIQKSDTIAVIKNGRVVEQGSHNELV 1233
V +H L+ T++ + ++K G+ + G E++
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 17/109 (15%)
Query: 474 ETQVGQLGFQMSGGQKQRIAIARALIR-----DP--KILLLDEATSALDAQSERIVQEAI 526
+ ++G+ Q+SGG+ QR+ +A +++ +P ++LLLDE ++LD Q A+
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSAL 172
Query: 527 DKV-----SKGRTTLIIAHRLS-TIRTANLIMVLKAGKVVESGSHNELM 569
DK+ +G + +H L+ T+R A+ +LK GK + SG E++
Sbjct: 173 DKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 32/233 (13%)
Query: 1021 RPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSV--FMDEQDIRNY 1078
+ + ILK +S +I G L G +G GK+T++ +L + G+V F Y
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 1079 NLKQLRSHIALVSQE------------PTLFAGTIRENIAYGKADARESEIKKAAVLANA 1126
+ + +R HI VS + +G + Y D EI+ A
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID---DEIRN-----EA 142
Query: 1127 HEFIS--GMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
H+ + G Y G LS G+KQR+ +ARA+ P +L+LDE + LD ++
Sbjct: 143 HQLLKLVGXSAKAQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198
Query: 1185 LVQEALEKMMMGRTC---VVVAHRLSTIQKS-DTIAVIKNGRVVEQGSHNELV 1233
+ L+ + + V H + I + I ++K+G+ ++QG+ +++
Sbjct: 199 SLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTL---IIAH 540
+S G+KQR+ IARAL P++L+LDE + LD + + +D +S TL + H
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 541 RLSTIRTANL--IMVLKAGKVVESGSHNELMNRGEGGEYYQ 579
+ I TAN I++LK G+ ++ G+ +++ ++Q
Sbjct: 222 FIEEI-TANFSKILLLKDGQSIQQGAVEDILTSENXSRFFQ 261
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 11/217 (5%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL--ERFYDPLKGSVFMDEQDIRNYNL 1080
D+ IL+GLSL + G+ A++G +G GKST+ L Y+ G+V +D+ +
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 1081 KQLRSH-IALVSQEPTLFAGTIRENIAYGKADARES-----EIKKAAVLANAHEFISGMK 1134
+ I + Q P G + +A S + + E I+ +K
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
D V SGG+K+R + + + P + +LDE+ S LD + +V + + +
Sbjct: 152 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211
Query: 1195 MG-RTCVVVAH--RLSTIQKSDTIAVIKNGRVVEQGS 1228
G R+ ++V H R+ K D + V+ GR+V+ G
Sbjct: 212 DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
+ K+P+ T+ +GF SGG+K+R I + + +P++ +LDE+ S LD + ++V +
Sbjct: 149 LLKMPEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 526 IDKVSKGRTTLIIA---HRLSTIRTANLIMVLKAGKVVESGS 564
++ + G+ + II R+ + + VL G++V+SG
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 11/228 (4%)
Query: 1023 DQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL--ERFYDPLKGSVFMDEQDIRNYNL 1080
D+ IL+GLSL + G+ A++G +G GKST+ L Y+ G+V +D+ +
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 1081 KQLRSH-IALVSQEPTLFAGTIRENIAYGKADARES-----EIKKAAVLANAHEFISGMK 1134
+ I + Q P G + +A S + + E I+ +K
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 132
Query: 1135 DGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM 1194
D V SGG+K+R + + + P + +LDE+ S LD + +V + + +
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
Query: 1195 MG-RTCVVVAH--RLSTIQKSDTIAVIKNGRVVEQGSHNELVALSRGG 1239
G R+ ++V H R+ K D + V+ GR+V+ G + L G
Sbjct: 193 DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG 240
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 466 ITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEA 525
+ K+P+ T+ +GF SGG+K+R I + + +P++ +LDE+ S LD + ++V +
Sbjct: 130 LLKMPEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187
Query: 526 IDKVSKGRTTLIIA---HRLSTIRTANLIMVLKAGKVVESGS 564
++ + G+ + II R+ + + VL G++V+SG
Sbjct: 188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 32/202 (15%)
Query: 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR-NYNLKQLRSHIALVS 1091
+I G+ + +VG +G GK+T + +L +P +G V E D+ Y + +++
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---EWDLTVAYKPQYIKAE----- 429
Query: 1092 QEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ-LSG 1150
+ GT+ E ++ + S K +L G+ D YD R V+ LSG
Sbjct: 430 -----YEGTVYELLSKIDSSKLNSNFYKTELLKPL-----GIIDLYD-----RNVEDLSG 474
Query: 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMG--RTCVVVAHRLST 1208
G+ QR+A+A +L++ I LLDE ++ LD V A+ +M +T +VV H +
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534
Query: 1209 IQK-SDTIAVIKNGRVVEQGSH 1229
I SD + V + E G H
Sbjct: 535 IDYVSDRLIVFEG----EPGRH 552
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV--SKGRTTLIIAHR 541
+SGG+ QR+AIA L+RD I LLDE ++ LD + V AI + +T L++ H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 542 LSTIRTANLIMVLKAGKVVESGSH 565
+ I + +++ G E G H
Sbjct: 532 VLMIDYVSDRLIVFEG---EPGRH 552
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHR 541
Q+SGG+ QR+AIA AL+R DE +S LD + V I +++ +G+ L++ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 542 LSTI 545
L+ +
Sbjct: 288 LAVL 291
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHR 1205
QLSGG+ QR+A+A A+L+ DE +S LD V + ++ G+ +VV H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 1206 LSTIQK-SDTIAVI 1218
L+ + SD I V+
Sbjct: 288 LAVLDYLSDVIHVV 301
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 32/202 (15%)
Query: 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIR-NYNLKQLRSHIALVS 1091
+I G+ + +VG +G GK+T + +L +P +G V E D+ Y + +++
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---EWDLTVAYKPQYIKAE----- 415
Query: 1092 QEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQ-LSG 1150
+ GT+ E ++ + S K +L G+ D YD R V+ LSG
Sbjct: 416 -----YEGTVYELLSKIDSSKLNSNFYKTELLKPL-----GIIDLYD-----RNVEDLSG 460
Query: 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMG--RTCVVVAHRLST 1208
G+ QR+A+A +L++ I LLDE ++ LD V A+ +M +T +VV H +
Sbjct: 461 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 520
Query: 1209 IQK-SDTIAVIKNGRVVEQGSH 1229
I SD + V + E G H
Sbjct: 521 IDYVSDRLIVFEG----EPGRH 538
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKV--SKGRTTLIIAHR 541
+SGG+ QR+AIA L+RD I LLDE ++ LD + V AI + +T L++ H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 542 LSTIRTANLIMVLKAGKVVESGSH 565
+ I + +++ G E G H
Sbjct: 518 VLMIDYVSDRLIVFEG---EPGRH 538
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHR 541
Q+SGG+ QR+AIA AL+R DE +S LD + V I +++ +G+ L++ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 542 LSTI 545
L+ +
Sbjct: 274 LAVL 277
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 1147 QLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAHR 1205
QLSGG+ QR+A+A A+L+ DE +S LD V + ++ G+ +VV H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 1206 LSTIQK-SDTIAVI 1218
L+ + SD I V+
Sbjct: 274 LAVLDYLSDVIHVV 287
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 1024 QMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL--ERFYDPLKGSVFMDEQDIRNYNL- 1080
+ ILKG++L + G+ AL+G +G GKST+ +L + Y +G + +D ++I +
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPD 75
Query: 1081 KQLRSHIALVSQEPTLFAGTIREN---IAYGKADARE-------SEIKKAAVLANAHE-F 1129
++ R + L Q P G N +A RE +++KKA L + E +
Sbjct: 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY 135
Query: 1130 ISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEA 1189
+S Y E SGG+K+R + + ++ P+ +LDE S LD + +V
Sbjct: 136 LS-------RYLNE---GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARG 185
Query: 1190 LEKMM---MGRTCVVVAHRLSTIQKSDTIAVIKNGRVVEQG 1227
+ M G + R+ + D + V+ +GRVV G
Sbjct: 186 VNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 10/227 (4%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALL--QRFYDPVE 401
++E RD++ S +L+G+NL VP T +L Y
Sbjct: 3 QLEIRDLW---ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER 59
Query: 402 GEVLLDGYKIRRLHL-KWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAKAA 460
GE+LLDG I L + R + L Q PV N L A + + A+
Sbjct: 60 GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW 119
Query: 461 NAHDFITKLPDGYETQVGQ-LGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSE 519
+L D E+ + + L SGG+K+R I + L+ +P +LDE S LD +
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDAL 179
Query: 520 RIVQEAIDKV-SKGRTTLIIAH--RLSTIRTANLIMVLKAGKVVESG 563
++V ++ + L+I H R+ + + V+ G+VV +G
Sbjct: 180 KVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 32/194 (16%)
Query: 1033 KIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQ 1092
+I+ G+ + +VG +G GK+T + L +P +G + D V+
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD----------------LTVAY 351
Query: 1093 EPTL----FAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYDTYCGERGVQL 1148
+P + GT+ E ++ A S K +L G+ D YD E L
Sbjct: 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----GIIDLYDREVNE----L 402
Query: 1149 SGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMG--RTCVVVAHRL 1206
SGG+ QR+A+A +L++ I LLDE ++ LD V A+ + +T +VV H +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Query: 1207 STIQK-SDTIAVIK 1219
I SD + V +
Sbjct: 463 LXIDYVSDRLXVFE 476
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 1034 IEAGKTVALVGQSGCGKSTIIGLLERFYDP-LKGSVFMDEQDIRNYNLKQLRSHIA---- 1088
++ G V +VG +G GKST + +L P L G + IR + +L+++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 1089 ----------LVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAHEFISGMKDGYD 1138
V P G + E + + E+ KA L N E
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE---------- 153
Query: 1139 TYCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKM-MMG 1196
R +Q LSGG+ QR+A+A A+L+N + DE +S LD A+ ++ G
Sbjct: 154 -----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208
Query: 1197 RTCVVVAHRLSTIQK-SDTIAVI 1218
++ +VV H L+ + SD I V+
Sbjct: 209 KSVLVVEHDLAVLDYLSDIIHVV 231
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 471 DGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS 530
D Y+ +V +L SGG+ QR+AIA L+RD I LLDE ++ LD + V AI +
Sbjct: 393 DLYDREVNEL----SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLX 448
Query: 531 KG--RTTLIIAHRLSTI 545
+ +T L++ H + I
Sbjct: 449 EKNEKTALVVEHDVLXI 465
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVS-KGRTTLIIAHR 541
+SGG+ QR+AIA AL+R+ DE +S LD + AI ++S +G++ L++ H
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Query: 542 LSTI 545
L+ +
Sbjct: 218 LAVL 221
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 97/198 (48%), Gaps = 16/198 (8%)
Query: 1008 RIELKNVFFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLERFYDPLKGS 1067
++E++++ Y D+ +L+ +++ IE G V G +G GK+T++ + + PLKG
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 1068 VFMDEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
+ + I +++ I + +E + E+ Y KA A +K N +
Sbjct: 66 IIYNGVPI-----TKVKGKIFFLPEEIIVPRKISVED--YLKAVASLYGVK-----VNKN 113
Query: 1128 EFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQ 1187
E + ++ ++ +LS G +R+ LA +L N I +LD+ A+D S+ V
Sbjct: 114 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 1188 EALEKMMMGRTCVVVAHR 1205
+++ +++ + V+++ R
Sbjct: 174 KSILEILKEKGIVIISSR 191
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 91/205 (44%), Gaps = 30/205 (14%)
Query: 344 EIEFRDVYFCYPSRPDTLVLQGLNLRVPAXXXXXXXXXXXXXXXTTIALLQRFYDPVEGE 403
++E RD+ Y D VL+ + + + T + + + P++GE
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 404 VLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASM-------DDVISA 456
++ +G I ++ + ++ + +E ++ E+ L K AS+ ++++ A
Sbjct: 66 IIYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYL--KAVASLYGVKVNKNEIMDA 118
Query: 457 AKAANAHDFITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATSALDA 516
++ D KL ++S G +R+ +A L+ + +I +LD+ A+D
Sbjct: 119 LESVEVLDLKKKLG------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 517 QSERIVQEAIDKVSKGRTTLIIAHR 541
S+ V ++I ++ K + +II+ R
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSR 191
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAH 1204
LSGG K ++ALARA+L+N ILLLDE T+ LD+V+ + + L G T + ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLS 1207
LSGGQK ++ LA + P +++LDE T+ LD S + +AL++ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1208 -TIQKSDTIAVIKNGRVVEQGSHN 1230
T ++ + +K+GR G HN
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG-HN 982
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALD 515
+SGG K ++A+ARA++R+ ILLLDE T+ LD
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLS 543
+SGGQK ++ +A + P +++LDE T+ LD S + +A+ + G +II H S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH--S 957
Query: 544 TIRTANL---IMVLKAGKVVESGSHN 566
T NL + +K G+ SG HN
Sbjct: 958 AEFTKNLTEEVWAVKDGRXTPSG-HN 982
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 1001 IKRQMRGRIELKNVFFAYP--TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE 1058
+K + + +++ N F YP ++P + ++ + +A++G +G GKST+I +L
Sbjct: 664 VKTKQKAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLT 720
Query: 1059 RFYDPLKGSVFMDEQD----IRNYNLKQLRSHIALVSQE 1093
P G V+ E I+ + + SH+ E
Sbjct: 721 GELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSE 759
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAH 1204
LSGG K ++ALARA+L+N ILLLDE T+ LD+V+ + + L G T + ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 597
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLS 1207
LSGGQK ++ LA + P +++LDE T+ LD S + +AL++ G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 1208 -TIQKSDTIAVIKNGRVVEQGSHN 1230
T ++ + +K+GR G HN
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG-HN 976
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALD 515
+SGG K ++A+ARA++R+ ILLLDE T+ LD
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLS 543
+SGGQK ++ +A + P +++LDE T+ LD S + +A+ + G +II H S
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH--S 951
Query: 544 TIRTANL---IMVLKAGKVVESGSHN 566
T NL + +K G+ SG HN
Sbjct: 952 AEFTKNLTEEVWAVKDGRXTPSG-HN 976
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 1001 IKRQMRGRIELKNVFFAYP--TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE 1058
+K + + +++ N F YP ++P + ++ + +A++G +G GKST+I +L
Sbjct: 658 VKTKQKAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLT 714
Query: 1059 RFYDPLKGSVFMDEQD----IRNYNLKQLRSHIALVSQE 1093
P G V+ E I+ + + SH+ E
Sbjct: 715 GELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSE 753
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAH 1204
LSGG K ++ALARA+L+N ILLLDE T+ LD+V+ + + L G T + ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 1148 LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCVVVAHRLS 1207
LSGGQK ++ LA + P +++LDE T+ LD S + +AL++ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1208 -TIQKSDTIAVIKNGRVVEQGSHN 1230
T ++ + +K+GR+ G HN
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG-HN 982
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALD 515
+SGG K ++A+ARA++R+ ILLLDE T+ LD
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRLS 543
+SGGQK ++ +A + P +++LDE T+ LD S + +A+ + G +II H S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH--S 957
Query: 544 TIRTANL---IMVLKAGKVVESGSHN 566
T NL + +K G++ SG HN
Sbjct: 958 AEFTKNLTEEVWAVKDGRMTPSG-HN 982
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 1001 IKRQMRGRIELKNVFFAYP--TRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLLE 1058
+K + + +++ N+ F YP ++P + ++ + +A++G +G GKST+I +L
Sbjct: 664 VKTKQKAIVKVTNMEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLT 720
Query: 1059 RFYDPLKGSVFMDEQD----IRNYNLKQLRSHIALVSQE 1093
P G V+ E I+ + + SH+ E
Sbjct: 721 GELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSE 759
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 1142 GERGVQLSGGQKQRIALA---RAILKNPSILLLDEATSALDSVSESLVQEALEKMM-MGR 1197
G+ +LSGG+ QRI LA R + ++ +LDE T+ L +Q L K++ G
Sbjct: 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN 784
Query: 1198 TCVVVAHRLSTIQKSDTIAVI------KNGRVVEQGSHNEL 1232
T + V H++ + SD + I GR+V QG+ E+
Sbjct: 785 TVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEV 825
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPK---ILLLDEATSALD-AQSERIVQEAIDKVSK 531
++GQ ++SGG+ QRI +A L R + + +LDE T+ L A ER+ ++ + V
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 532 GRTTLIIAHRLSTIRTANLIMVLKAGKVVESG 563
G T + + H++ + ++ ++ + G + G
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGG 814
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARAL-IRDP--KILLLDEATSALDAQSERIVQEAIDK 528
GY ++GQ +SGG+ QRI +A L RD + +LDE T L + R + E + +
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 529 -VSKGRTTLIIAHRLSTIRTANLIMVL------KAGKVVESGSHNEL 568
V +G T ++I H L I+ A+ I+ L + G +V +G+ E+
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 1142 GERGVQLSGGQKQRIALARAILKNP---SILLLDEATSALDSVSESLVQEALEKMM-MGR 1197
G+ LSGG+ QRI LA + K ++ +LDE T L + E L +++ G
Sbjct: 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN 859
Query: 1198 TCVVVAHRLSTIQKSDTI 1215
T +V+ H L I+ +D I
Sbjct: 860 TVIVIEHNLDVIKNADHI 877
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 1148 LSGGQKQRIALARAILKNPS--ILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAH 1204
LSGG+ QRI LA I + I +LDE T L + + L+K+ +G T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 1205 RLSTIQKSDTIAVI------KNGRVVEQGSHNELV 1233
I+ +D I I GRVV QG+ +EL+
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 484 MSGGQKQRIAIARALIRDPK--ILLLDEATSALDAQ-SERIVQEAIDKVSKGRTTLIIAH 540
+SGG+ QRI +A + I +LDE T L + +ER+++ G T +++ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 541 RLSTIRTANLIMVL------KAGKVVESGSHNELMNRGEG---GEY 577
IR A+ I+ + G+VV G+ +EL+ + GEY
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEY 570
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGR--TTLIIAHR 541
+SGG+ Q++ IA L ++ + +LD+ +S LD + IV +AI +V++ R T II H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 542 LSTIR-TANLIMVLKA 556
LS A+ I+V K
Sbjct: 446 LSIHDYIADRIIVFKG 461
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 49/224 (21%)
Query: 1015 FFAYPTRPDQMILKGLSLKIEAGKTVALVGQSGCGKSTIIGLL-----ERFYDPLKGSVF 1069
F PT + IL ++G++G GK+T++ +L F DP V
Sbjct: 16 LFGLPTPKNNTIL-------------GVLGKNGVGKTTVLKILAGEIIPNFGDP-NSKVG 61
Query: 1070 MDE-------QDIRNYNLKQLRSH-------IALVSQEPTLFAGTIRENIAYGKADARES 1115
DE ++I NY K+L S+ I V GT+ E + ++
Sbjct: 62 KDEVLKRFRGKEIYNY-FKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKD 120
Query: 1116 EIKKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEAT 1175
E+K+ + N + + LSGG QR+ +A ++L+ + + D+ +
Sbjct: 121 EVKELLNMTNLWNKDANI--------------LSGGGLQRLLVAASLLREADVYIFDQPS 166
Query: 1176 SALDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQK-SDTIAVI 1218
S LD + +A+ +++ + +VV H L + +D I +I
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII 210
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 484 MSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIAHRL 542
+SGG QR+ +A +L+R+ + + D+ +S LD + + +AI ++ K + +++ H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 1035 EAGKTVALVGQSGCGKSTIIGLLERFYDPLKGSVFMDEQDIRNYNLKQLRSHIALVSQEP 1094
+ G+ + ++G +G GK+T +L +GSV E+ I +Y +++ +
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSV-TPEKQILSYKPQRIFPN-------- 342
Query: 1095 TLFAGTIRENIAYGKADARESE---IKKAAVLANAHEFI-SGMKDGYDTYCGERGVQLSG 1150
+ GT+++ + DA + ++ N H + S + D LSG
Sbjct: 343 --YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND------------LSG 388
Query: 1151 GQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMMGRTCV--VVAHRLS 1207
G+ Q++ +A + K + +LD+ +S LD +V +A++++ R V ++ H LS
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPK---ILLLDEATSALDAQS-ERIVQEAIDKVSK 531
++GQ +SGG+ QR+ +A L R + +LDE T+ L R++ V
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 532 GRTTLIIAHRLSTIRTANLIMVL------KAGKVVESGSHNEL 568
G T L+I H L I+TA+ I+ L + G++V G+ E+
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 1142 GERGVQLSGGQKQRIALARAILKNP---SILLLDEATSALDSVSESLVQEALEKMM-MGR 1197
G+ LSGG+ QR+ LA + + ++ +LDE T+ L + + + L +++ G
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 1198 TCVVVAHRLSTIQKSDTIAVI------KNGRVVEQGSHNEL--VALSRGGAYYSLI 1245
T +V+ H L I+ +D I + + G++V G+ E+ V S G Y I
Sbjct: 900 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPI 955
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 1148 LSGGQKQRIALARAILKNPS--ILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAH 1204
LSGG+ QRI LA I + + +LDE + L + L+ M +G T +VV H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 1205 RLSTIQKSDTI------AVIKNGRVVEQGSHNELV 1233
T+ +D + A I G VV G+ E++
Sbjct: 565 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTII 1054
LK +S+KI G VA+ G SG GKST++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 472 GYETQVGQLGFQMSGGQKQRIAIARALIRDPK---ILLLDEATSALDAQS-ERIVQEAID 527
GY ++GQ +SGG+ QR+ +A L R + +LDE T+ L R++
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 528 KVSKGRTTLIIAHRLSTIRTANLIMVL------KAGKVVESGSHNEL 568
V G T L+I H L I+TA+ I+ L + G++V G+ E+
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 1142 GERGVQLSGGQKQRIALARAILKNP---SILLLDEATSALDSVSESLVQEALEKMM-MGR 1197
G+ LSGG+ QR+ LA + + ++ +LDE T+ L + + + L +++ G
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 1198 TCVVVAHRLSTIQKSDTIAVI------KNGRVVEQGSHNEL--VALSRGGAYYSLI 1245
T +V+ H L I+ +D I + + G++V G+ E+ V S G Y I
Sbjct: 900 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPI 955
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTII 1054
LK +S+KI G VA+ G SG GKST++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 1148 LSGGQKQRIALARAILKNPS--ILLLDEATSALDSV-SESLVQEALEKMMMGRTCVVVAH 1204
LSGG+ QRI LA I + + +LDE + L ++ L+ +G T +VV H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 1205 RLSTIQKSDTI------AVIKNGRVVEQGSHNEL 1232
T +D + A I G VV G+ E+
Sbjct: 565 DEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 460 ANAHDFITKLPD---GYETQVGQLGFQMSGGQKQRIAIARALIRDPK---ILLLDEATSA 513
A H ++ L D GY ++GQ +SGG+ QR+ +A L + + +LDE T+
Sbjct: 838 AGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
Query: 514 LDAQSERIVQEAIDK-VSKGRTTLIIAHRLSTIRTANLIMVL 554
L R + I+ V KG T ++I H L I+T++ I+ L
Sbjct: 897 LHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDL 938
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 1148 LSGGQKQRIALARAILKN--PSILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAH 1204
LSGG+ QRI LA I + +LDE + L + E L ++ +G T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1205 RLSTIQKSDTIAVI------KNGRVVEQGSHNELV--ALSRGGAYYS 1243
TI+ +D I I GR+V G ++EL+ S GAY S
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLS 628
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 20/129 (15%)
Query: 1123 LANAHEFISGMKD---GYDTYCGERGVQLSGGQKQRIALARAILKNP---SILLLDEATS 1176
+A H ++ + D GY G+ LSGG+ QR+ LA + K ++ +LDE T+
Sbjct: 837 IAGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTT 895
Query: 1177 AL--DSVSE--SLVQEALEKMMMGRTCVVVAHRLSTIQKSDTI------AVIKNGRVVEQ 1226
L D + + +++ ++K G T +V+ H L I+ SD I G VV Q
Sbjct: 896 GLHFDDIRKLLNVINGLVDK---GNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952
Query: 1227 GSHNELVAL 1235
G+ ++ A+
Sbjct: 953 GTPEDVAAV 961
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 476 QVGQLGFQMSGGQKQRIAIARALIRDPK---ILLLDEATSALDAQS-ERIVQEAIDKVSK 531
++GQ +SGG+ QR+ +A L R + +LDE T+ L R++ V
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 532 GRTTLIIAHRLSTIRTANLIMVL------KAGKVVESGSHNEL 568
G T L+I H L I+TA+ I+ L + G++V G+ E+
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 1142 GERGVQLSGGQKQRIALARAILKNP---SILLLDEATSALDSVSESLVQEALEKMM-MGR 1197
G+ LSGG+ QR+ LA + + ++ +LDE T+ L + + + L +++ G
Sbjct: 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 597
Query: 1198 TCVVVAHRLSTIQKSDTIAVI------KNGRVVEQGSHNEL--VALSRGGAYYSLI 1245
T +V+ H L I+ +D I + + G++V G+ E+ V S G Y I
Sbjct: 598 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPI 653
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 1148 LSGGQKQRIALARAILKNPS--ILLLDEATSALDSVSESLVQEALEKMM-MGRTCVVVAH 1204
LSGG+ QRI LA I + + +LDE + L + L+ M +G T +VV H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 1205 RLSTIQKSDTI------AVIKNGRVVEQGSHNELV 1233
T+ +D + A I G VV G+ E++
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 1027 LKGLSLKIEAGKTVALVGQSGCGKSTII 1054
LK +S+KI G VA+ G SG GKST++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 99/208 (47%), Gaps = 26/208 (12%)
Query: 1009 IELKNVFFAYPTRP-DQMILKGLSLKIEAGKTVALVGQSGCGKSTII----GLLERFYDP 1063
I+LKNV + ++ L+ ++L++ G+ V ++G +G GK+T++ GLL P
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-----P 55
Query: 1064 LKGSVFMDEQDIRNYNLKQLRSHIALVSQEPTLFA-GTIRENIAYGKADARESEIKKAAV 1122
G++F++ ++R ++R++I + P + G +I Y + + + +
Sbjct: 56 YSGNIFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKG--LDRDLF 108
Query: 1123 LANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVS 1182
L E + +K G + + +LS GQ + + A+ P I+ LDE +D+
Sbjct: 109 L----EMLKALKLG-EEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1183 ESLVQEALEKMMMGRTCVVVAHRLSTIQ 1210
++ +++ G+ ++V H L +
Sbjct: 164 RHVISRYIKE--YGKEGILVTHELDMLN 189
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 68/153 (44%), Gaps = 25/153 (16%)
Query: 399 PVEGEVLLDGYKIRRLHLKWLRSQMGLVNQEPVLFATSITENILFGKDGASMDDVISAAK 458
P G + ++G ++R++ ++R ++T++ E + G +++D++ +
Sbjct: 55 PYSGNIFINGMEVRKIR-NYIR------------YSTNLPEAY---EIGVTVNDIVYLYE 98
Query: 459 AANAHD------FITKLPDGYETQVGQLGFQMSGGQKQRIAIARALIRDPKILLLDEATS 512
D + L G E +L +++S GQ + + AL P+I+ LDE
Sbjct: 99 ELKGLDRDLFLEMLKALKLGEEILRRKL-YKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157
Query: 513 ALDAQSERIVQEAIDKVSKGRTTLIIAHRLSTI 545
+DA ++ I + G+ +++ H L +
Sbjct: 158 NVDAARRHVISRYIKEY--GKEGILVTHELDML 188
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 42/202 (20%)
Query: 1016 FAYPTRPDQMILKGLSLKIEAGK-----TVALVGQSGCGKSTIIGLLERFYDPLKGSVFM 1070
F+YP+ + L +E G+ + ++G++G GK+T+I LL P +G
Sbjct: 354 FSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG---- 407
Query: 1071 DEQDIRNYNLKQLRSHIALVSQEPTLFAGTIRENIAYGKADAR------ESEIKKAAVLA 1124
QDI N+ IA F GT+R+ + + K + ++++ K +
Sbjct: 408 --QDIPKLNVSMKPQKIA------PKFPGTVRQ-LFFKKIRGQFLNPQFQTDVVKPLRI- 457
Query: 1125 NAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSES 1184
D + LSGG+ QR+A+ A+ I L+DE ++ LDS
Sbjct: 458 -------------DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI 504
Query: 1185 LVQEALEKMMM--GRTCVVVAH 1204
+ + + + ++ +T +V H
Sbjct: 505 ICSKVIRRFILHNKKTAFIVEH 526
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
Query: 1036 AGKTVALVGQSGCGKSTIIGLLE--------RFYDPLKGS---VFMDEQDIRNYNLKQLR 1084
G+ + LVG +G GKST + +L RF DP + + +++NY K L
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 1085 SHIA------LVSQEPTLFAGTIRE--NIAYGKADARESEIKKAAVLANAHEFISGMKDG 1136
I V P G +++ + + + ++K+ + +
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL------ 215
Query: 1137 YDTYCGERGVQ-LSGGQKQRIALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMM 1195
+R ++ LSGG+ QR A+ + ++ + + DE +S LD V + L + + ++
Sbjct: 216 ------KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD-VKQRLNAAQIIRSLL 268
Query: 1196 GRT--CVVVAHRLSTIQK-SDTIAVI 1218
T + V H LS + SD + +I
Sbjct: 269 APTKYVICVEHDLSVLDYLSDFVCII 294
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK--VSKGRTTLIIAH 540
+SGG+ QR+AI AL I L+DE ++ LD++ I + I + + +T I+ H
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 483 QMSGGQKQRIAIARALIRDPKILLLDEATSALDAQSERIVQEAIDK-VSKGRTTLIIAHR 541
++SGG+ QR AI + +++ + + DE +S LD + + I ++ + + + H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 542 LSTI 545
LS +
Sbjct: 281 LSVL 284
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Query: 1070 MDEQDIRNYN--LKQLRSHIALVSQEPTLFAGTIRENIAYGKADARESEIKKAAVLANAH 1127
MDE+ + +N Q+RSH V + +LF G G+A+ R L + +
Sbjct: 265 MDEEMTKRFNDTFVQIRSHFDQVFR--SLFGG--------GRAELR---------LTDPN 305
Query: 1128 EFISGMKDGYDTYCGERGVQL------SGGQK--QRIALARAILKNPSI--LLLDEATSA 1177
+ + G + G +L SGG++ IAL +ILK + +LDE +A
Sbjct: 306 DLLHS---GVEIIAQPPGKKLQNLNLLSGGERALTAIALLFSILKVRPVPFCVLDEVEAA 362
Query: 1178 LDSVSESLVQEALEKMMMGRTCVVVAHRLSTIQKSDTI 1215
LD + + L+K +V+ HR T++++D +
Sbjct: 363 LDEANVFRFAQYLKKYSSDTQFIVITHRKGTMEEADVL 400
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 481 GFQMSGGQKQRIAIARALIRDP-KILLLDEATSALDAQSERIVQEAIDKVSKGRTTLIIA 539
G Q++ R+AIA ALI + + ++LDE T LD + E KV +II
Sbjct: 284 GEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343
Query: 540 HRLSTIRTANLIMVLK 555
H A++I+ +K
Sbjct: 344 HHRELEDVADVIINVK 359
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 1130 ISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKNPSILL 1170
+SG + Y GE GV++S + LA AILKNP + L
Sbjct: 187 VSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,336,614
Number of Sequences: 62578
Number of extensions: 1232541
Number of successful extensions: 3505
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3002
Number of HSP's gapped (non-prelim): 272
length of query: 1255
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1145
effective length of database: 8,089,757
effective search space: 9262771765
effective search space used: 9262771765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)