BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000847
(1255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
Length = 1042
Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 262/891 (29%), Positives = 468/891 (52%), Gaps = 49/891 (5%)
Query: 46 VPPPPPVNSLLDYNSGSATVFPAESEDDWRRFREAGLLDEATMERKDREALMEKVSKLEK 105
P N L + P E W+R ++AG DE +++ +D+ AL+ ++KLE
Sbjct: 13 TPSTAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGF-DEQSIKNRDKAALIAYIAKLES 71
Query: 106 ELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRR 165
E+YDYQ+NMGLLL+EK E +S+ EE++ S +E+ RE+SA++ A +EA+KRE++L++
Sbjct: 72 EVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKK 131
Query: 166 ALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEA 225
+ + K+C++ LEK L +M E A+TK+ + T+++A+ ++ K + E K AAEA
Sbjct: 132 DVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEA 191
Query: 226 KLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQI 285
AE NR E KL+E+ESRE + R S +E E E +R+ L E K LQ
Sbjct: 192 LQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQ 251
Query: 286 GDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKE-------REDE 338
ERL + + +LNQRE + I + ++L ELEK +D + + +E ++
Sbjct: 252 EHERLLDAQVSLNQRE------DHIF-ARSQELAELEKGLDTAKTTFEEERKAFEDKKSN 304
Query: 339 INSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEK 398
+ LA +E V F ++ LL+ + Y + +E+ L+ KE+
Sbjct: 305 LEIALALCAKREEVCFYSH-NSLLFLVLHYRSSKKFLGDKIAVSERESSLLK-----KEQ 358
Query: 399 RLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQ 458
LL EEK+ ++E IQ +L +Q IL ++ + E ELE K KS+E E+ SK A + +
Sbjct: 359 ELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELR 418
Query: 459 EFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL 518
E +I RE+ + +E L+ +S + EKE D+ + ++ E+EK + A E+ + + L
Sbjct: 419 EVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTML 478
Query: 519 IADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYR 578
+KE L+ L +E+ Q + + ++ QKL+ + E SEL L+ +LK++++ R
Sbjct: 479 EDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLR 538
Query: 579 HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 638
Q+ +L E + L+ ++ KFE EWE +D KR+E+ KE E I +++ + +K
Sbjct: 539 AQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIK 598
Query: 639 KEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAE 698
+E A+R+ + ++E++ ++E F M E K + +R L EMQ+ E
Sbjct: 599 EERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYC 658
Query: 699 LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKV 758
+ N+R+++E ++R + FE++++ I LKE+AE E++ ++ E +L+ E+ E+K+
Sbjct: 659 IENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKL 718
Query: 759 NREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAF 818
+RE+ + + ++ ++EL + +L R + E++ +E+ +N +
Sbjct: 719 DRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDM 778
Query: 819 VISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYD-------SNISNSHGGMNLG-- 869
++ +QL + L + E+ +Q V+ + S +SNS G N
Sbjct: 779 SMAKMQLSN--------LERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSME 830
Query: 870 -----RADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPT 915
S SW+++CT+ IF SP K ++++ E + VP+
Sbjct: 831 RQNGLTPSSATPFSWIKRCTNLIFKTSPEK------STLMHHYEEEGGVPS 875
>sp|Q75JP5|Y2471_DICDI Calponin homology domain-containing protein DDB_G0272472
OS=Dictyostelium discoideum GN=DDB_G0272472 PE=4 SV=1
Length = 1508
Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 126/238 (52%), Gaps = 32/238 (13%)
Query: 533 DQIESE---NAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHE 589
DQ+E E +QE ++ E+ +K ++ +E +E R+ + +++E R ++E E +
Sbjct: 755 DQLEFERLLKLKQEKELAEKLEKERLEKEAAAEEKRIAA---EKLEKQRLEKEA---EEK 808
Query: 590 DLQQDREKFEKEWEVLDEKRDEINKEQEKIAD--EKKKLEKLQHSAEERLKKEECAMRDY 647
+ QD L+ KR E E+++IA E+K+LEK + E+R+ E+ +
Sbjct: 809 RIAQD----------LERKRLEKEAEEKRIAQDLERKRLEK--EAEEKRIAAEKLKQQQE 856
Query: 648 VQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQE-------AELL 700
+ ++E RL+KEA E + E+ + E +K+ EE E +R+ +E AEL
Sbjct: 857 LAAKLEKERLEKEAEEKRIAQEKRIAEENRIAQEKKIAEELEKKRLQKEEQDRLAAAEL- 915
Query: 701 NRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKV 758
R ++EKE +E+ E +++R+ + A +K +A+ K E+++LEKE E ++
Sbjct: 916 -ERKRLEKEAEEKRIAQELEKKRLEKEAAEVKRIADEAAAAAKLEKERLEKEAEEKRI 972
>sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=1 SV=3
Length = 2873
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 99/176 (56%), Gaps = 20/176 (11%)
Query: 455 LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELE 514
L Q+ +++ + EK+ R E+ L KK ++ E +N LA +++ + +RE+ + +EK+L E
Sbjct: 1658 LAQKRKKLAKKWEKVAREEEKLAKKGGKLAEVKNILAQKVEELPQREQNLDWQEKELAQE 1717
Query: 515 KQKLIADKESLQILKVEIDQ-----IESENAQQELQIQEECQKLKINEEEKSELLRLQSQ 569
++L D E L + E++Q +E + E + Q+ K++EEE ++
Sbjct: 1718 LEELEWDMEELSWKEEELNQEEGKLVEEKKKLAEEEEALAWQREKLSEEE--------TK 1769
Query: 570 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKK 625
L Q ++ELL++E E L Q +EK +E E L KR+++ +++ K+A ++++
Sbjct: 1770 LAQ-------EEELLIQEKEKLAQHKEKMPEEEERLGRKREQLIEKKMKLAQKRER 1818
>sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1
Length = 2017
Score = 34.3 bits (77), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 682 RKMLEEFEMQRMNQEAELLNRRDKMEKELQ---------ERTRTFEEKRERVLNDIAHLK 732
RK L + E +R E +L RDK + +Q +R R+ E R +++AH
Sbjct: 553 RKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSL 612
Query: 733 EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQ 767
+VA+ + +E++ ER++L+ + E++ R++L+E+Q
Sbjct: 613 QVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQ 647
>sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 OS=Homo sapiens GN=AKAP9 PE=1 SV=3
Length = 3911
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 413 VEIQKLLDDQRAILDAKQQEFELELEEKRKSIE---EEMRSKISALDQQEFEISHREEKL 469
+EI KL D Q++++++K +E L++ E +K IE +E + K L+Q+ E+ + E L
Sbjct: 709 LEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEK-GTLEQEVQELQLKTELL 767
Query: 470 ERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE 512
E++ +KEKENDL + ++ +K E+K LE
Sbjct: 768 EKQ----------MKEKENDLQEKFAQLEAENSILKDEKKTLE 800
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,701,957
Number of Sequences: 539616
Number of extensions: 19973941
Number of successful extensions: 244593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 6092
Number of HSP's that attempted gapping in prelim test: 127012
Number of HSP's gapped (non-prelim): 53041
length of query: 1255
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1126
effective length of database: 121,958,995
effective search space: 137325828370
effective search space used: 137325828370
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)