Query 000847
Match_columns 1255
No_of_seqs 42 out of 44
Neff 3.2
Searched_HMMs 46136
Date Tue Apr 2 00:26:24 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.5 2E-07 4.4E-12 113.9 66.2 54 565-618 620-678 (880)
2 PRK02224 chromosome segregatio 99.4 1.6E-06 3.5E-11 106.1 70.0 93 156-252 148-240 (880)
3 KOG0161 Myosin class II heavy 99.4 1E-05 2.2E-10 106.3 78.5 560 198-806 909-1532(1930)
4 TIGR00606 rad50 rad50. This fa 99.3 2.6E-05 5.6E-10 100.5 76.6 68 177-244 399-466 (1311)
5 TIGR00606 rad50 rad50. This fa 99.3 3E-05 6.5E-10 99.9 72.6 102 496-611 823-927 (1311)
6 TIGR02169 SMC_prok_A chromosom 99.1 0.00015 3.3E-09 90.1 72.5 72 735-806 956-1039(1164)
7 KOG0161 Myosin class II heavy 99.1 0.00036 7.7E-09 92.4 80.1 634 95-806 1038-1708(1930)
8 TIGR02168 SMC_prok_B chromosom 99.1 0.0002 4.4E-09 88.5 81.5 49 758-806 993-1042(1179)
9 PRK01156 chromosome segregatio 99.0 0.00025 5.4E-09 87.8 70.8 35 157-191 149-185 (895)
10 TIGR02168 SMC_prok_B chromosom 99.0 0.0003 6.5E-09 87.1 81.2 74 219-292 247-320 (1179)
11 PRK03918 chromosome segregatio 99.0 0.00032 7E-09 86.1 68.7 46 257-302 242-287 (880)
12 PRK03918 chromosome segregatio 98.9 0.00052 1.1E-08 84.3 69.3 35 744-778 666-700 (880)
13 PF12128 DUF3584: Protein of u 98.9 0.00091 2E-08 86.2 67.9 206 559-768 594-809 (1201)
14 TIGR02169 SMC_prok_A chromosom 98.9 0.00072 1.6E-08 84.3 77.6 34 773-806 980-1013(1164)
15 COG1196 Smc Chromosome segrega 98.8 0.0017 3.7E-08 83.4 76.9 93 101-195 216-311 (1163)
16 PRK01156 chromosome segregatio 98.8 0.0013 2.8E-08 81.7 64.9 47 760-806 683-729 (895)
17 KOG4674 Uncharacterized conser 98.5 0.021 4.5E-07 75.8 71.1 460 90-608 864-1382(1822)
18 COG1196 Smc Chromosome segrega 98.4 0.026 5.5E-07 73.0 73.4 70 551-620 828-897 (1163)
19 COG0419 SbcC ATPase involved i 98.4 0.025 5.4E-07 71.3 74.8 66 224-290 273-338 (908)
20 PF07888 CALCOCO1: Calcium bin 98.3 0.02 4.4E-07 69.0 47.7 71 733-806 381-451 (546)
21 PF07888 CALCOCO1: Calcium bin 98.0 0.086 1.9E-06 63.8 40.5 98 566-667 351-448 (546)
22 PF10174 Cast: RIM-binding pro 98.0 0.13 2.7E-06 64.8 65.2 485 181-708 5-532 (775)
23 KOG0996 Structural maintenance 97.9 0.19 4.1E-06 64.7 41.5 288 348-661 312-612 (1293)
24 COG0419 SbcC ATPase involved i 97.9 0.2 4.4E-06 63.4 73.1 13 159-171 156-168 (908)
25 PF10174 Cast: RIM-binding pro 97.8 0.23 5E-06 62.5 64.4 460 95-629 71-616 (775)
26 PF01576 Myosin_tail_1: Myosin 97.8 4.7E-06 1E-10 103.4 0.0 509 152-777 40-565 (859)
27 KOG1029 Endocytic adaptor prot 97.7 0.08 1.7E-06 65.6 33.8 217 427-667 316-566 (1118)
28 PF12128 DUF3584: Protein of u 97.7 0.39 8.5E-06 62.8 72.4 89 570-658 676-769 (1201)
29 KOG0250 DNA repair protein RAD 97.6 0.14 3E-06 65.6 33.2 105 518-622 353-458 (1074)
30 PRK04863 mukB cell division pr 97.5 0.83 1.8E-05 61.3 41.2 210 217-442 292-534 (1486)
31 KOG4674 Uncharacterized conser 97.4 1.1 2.5E-05 60.5 71.3 609 94-763 575-1283(1822)
32 PRK11637 AmiB activator; Provi 97.4 0.054 1.2E-06 62.9 25.0 86 279-370 66-151 (428)
33 KOG0018 Structural maintenance 97.2 0.71 1.5E-05 59.4 33.9 96 571-669 302-400 (1141)
34 PF01576 Myosin_tail_1: Myosin 97.1 0.00011 2.3E-09 91.8 0.0 308 91-457 201-518 (859)
35 PRK12704 phosphodiesterase; Pr 97.1 0.027 5.8E-07 67.6 19.2 81 430-517 59-139 (520)
36 PF00038 Filament: Intermediat 96.9 0.98 2.1E-05 50.0 34.9 186 521-707 2-201 (312)
37 KOG1029 Endocytic adaptor prot 96.9 2.4 5.1E-05 53.5 33.5 251 524-792 321-598 (1118)
38 PF12072 DUF3552: Domain of un 96.8 0.16 3.5E-06 54.1 20.5 70 436-505 61-130 (201)
39 KOG0964 Structural maintenance 96.8 2.8 6E-05 54.0 35.1 271 394-667 170-502 (1200)
40 PRK00106 hypothetical protein; 96.8 0.3 6.4E-06 59.4 24.2 75 431-512 75-149 (535)
41 KOG4643 Uncharacterized coiled 96.7 3.3 7.1E-05 53.5 41.9 224 573-807 316-558 (1195)
42 PRK11637 AmiB activator; Provi 96.6 0.86 1.9E-05 53.2 25.8 27 386-412 98-124 (428)
43 PHA02562 46 endonuclease subun 96.6 2.5 5.4E-05 50.2 33.4 85 542-626 314-398 (562)
44 TIGR03319 YmdA_YtgF conserved 96.6 0.12 2.7E-06 62.1 19.4 76 430-512 53-128 (514)
45 PF00261 Tropomyosin: Tropomyo 96.6 0.66 1.4E-05 50.5 23.2 144 208-351 19-165 (237)
46 KOG0933 Structural maintenance 96.6 4.3 9.2E-05 52.6 38.7 24 868-893 1079-1105(1174)
47 TIGR03319 YmdA_YtgF conserved 96.6 0.31 6.7E-06 58.8 22.5 71 438-511 50-120 (514)
48 KOG0612 Rho-associated, coiled 96.5 5.3 0.00011 52.7 40.4 228 396-635 432-666 (1317)
49 PF08317 Spc7: Spc7 kinetochor 96.3 0.85 1.8E-05 51.9 22.7 166 477-648 127-292 (325)
50 PRK00106 hypothetical protein; 96.2 1.1 2.4E-05 54.6 24.4 126 441-589 74-202 (535)
51 PF05483 SCP-1: Synaptonemal c 96.0 6.6 0.00014 49.3 67.8 319 258-618 231-566 (786)
52 PRK12704 phosphodiesterase; Pr 96.0 0.39 8.4E-06 58.1 19.1 126 438-586 56-183 (520)
53 KOG0018 Structural maintenance 95.9 9.4 0.0002 50.0 53.7 214 572-800 652-898 (1141)
54 PF00261 Tropomyosin: Tropomyo 95.6 4.5 9.7E-05 44.2 25.2 71 214-284 4-74 (237)
55 PRK04863 mukB cell division pr 95.6 15 0.00032 50.1 39.8 73 364-447 216-288 (1486)
56 PHA02562 46 endonuclease subun 95.5 7.7 0.00017 46.2 33.4 49 570-618 356-404 (562)
57 KOG0977 Nuclear envelope prote 95.4 10 0.00022 46.9 35.7 327 389-766 30-378 (546)
58 TIGR03185 DNA_S_dndD DNA sulfu 95.2 12 0.00026 46.4 33.2 46 738-783 422-467 (650)
59 PF13851 GAS: Growth-arrest sp 94.7 7.5 0.00016 42.1 21.7 143 560-719 22-168 (201)
60 PRK09039 hypothetical protein; 94.6 11 0.00024 43.7 24.2 33 568-600 168-201 (343)
61 KOG0964 Structural maintenance 94.5 22 0.00048 46.5 36.7 126 472-600 357-488 (1200)
62 PF10146 zf-C4H2: Zinc finger- 94.5 1.7 3.6E-05 48.1 16.8 108 708-829 4-111 (230)
63 PRK12705 hypothetical protein; 94.5 1.8 3.8E-05 52.7 18.4 58 438-502 62-119 (508)
64 PF00038 Filament: Intermediat 94.4 10 0.00022 42.2 38.7 144 489-641 8-151 (312)
65 COG4942 Membrane-bound metallo 94.0 18 0.00039 43.6 31.7 215 360-601 18-246 (420)
66 KOG4643 Uncharacterized coiled 93.9 29 0.00063 45.6 50.5 130 476-605 413-549 (1195)
67 PF09726 Macoilin: Transmembra 93.5 13 0.00029 47.1 23.7 33 437-469 543-575 (697)
68 PF05557 MAD: Mitotic checkpoi 93.1 0.71 1.5E-05 57.4 12.2 21 700-720 619-639 (722)
69 PF09728 Taxilin: Myosin-like 93.0 21 0.00045 41.1 35.7 66 723-788 230-309 (309)
70 COG1340 Uncharacterized archae 92.7 23 0.00051 40.9 32.9 53 474-526 30-82 (294)
71 PF09731 Mitofilin: Mitochondr 92.4 23 0.0005 43.1 23.1 47 795-843 429-475 (582)
72 smart00787 Spc7 Spc7 kinetocho 92.3 12 0.00026 43.1 19.5 162 476-648 121-287 (312)
73 KOG0976 Rho/Rac1-interacting s 92.2 46 0.00099 43.1 49.4 112 386-499 94-208 (1265)
74 KOG0962 DNA repair protein RAD 90.8 78 0.0017 43.0 68.5 229 123-351 404-662 (1294)
75 PF05701 WEMBL: Weak chloropla 90.2 54 0.0012 40.2 47.5 55 504-558 283-337 (522)
76 PRK12705 hypothetical protein; 90.0 58 0.0013 40.3 24.2 15 430-444 65-79 (508)
77 PF05557 MAD: Mitotic checkpoi 89.8 0.095 2.1E-06 64.8 0.0 70 737-806 357-426 (722)
78 PF12072 DUF3552: Domain of un 89.6 7.8 0.00017 41.6 14.0 60 454-513 72-131 (201)
79 PF05701 WEMBL: Weak chloropla 89.5 61 0.0013 39.8 49.6 369 388-809 31-409 (522)
80 PF09755 DUF2046: Uncharacteri 89.3 51 0.0011 38.6 25.6 123 570-709 39-161 (310)
81 COG1340 Uncharacterized archae 88.9 52 0.0011 38.3 27.8 23 696-718 133-155 (294)
82 KOG0995 Centromere-associated 88.5 78 0.0017 39.7 40.3 12 443-454 217-228 (581)
83 PF05667 DUF812: Protein of un 88.5 79 0.0017 39.8 25.5 54 516-569 491-544 (594)
84 PF08317 Spc7: Spc7 kinetochor 87.9 57 0.0012 37.5 20.4 42 520-561 206-247 (325)
85 PF05262 Borrelia_P83: Borreli 87.1 31 0.00066 42.4 18.1 51 500-550 204-254 (489)
86 KOG0612 Rho-associated, coiled 87.0 1.3E+02 0.0029 40.7 52.4 29 765-794 1015-1043(1317)
87 COG1579 Zn-ribbon protein, pos 86.9 61 0.0013 36.7 23.5 89 586-678 96-184 (239)
88 COG1579 Zn-ribbon protein, pos 86.2 65 0.0014 36.5 22.0 72 414-490 11-82 (239)
89 PRK09039 hypothetical protein; 85.8 22 0.00048 41.4 15.5 110 163-276 65-174 (343)
90 PF13863 DUF4200: Domain of un 85.7 26 0.00056 34.3 13.8 92 444-545 12-103 (126)
91 KOG1666 V-SNARE [Intracellular 85.3 30 0.00065 38.7 15.3 159 197-365 21-209 (220)
92 PRK10246 exonuclease subunit S 84.8 1.5E+02 0.0033 39.4 72.7 49 154-204 164-223 (1047)
93 KOG0250 DNA repair protein RAD 83.1 1.8E+02 0.004 39.0 57.4 137 198-334 296-433 (1074)
94 KOG0579 Ste20-like serine/thre 82.8 1.6E+02 0.0034 38.1 41.5 292 412-728 807-1165(1187)
95 PF00769 ERM: Ezrin/radixin/mo 81.5 54 0.0012 36.7 15.7 79 523-601 12-90 (246)
96 PF12718 Tropomyosin_1: Tropom 80.0 66 0.0014 33.4 14.7 66 229-294 11-76 (143)
97 KOG2129 Uncharacterized conser 79.6 1.6E+02 0.0035 36.1 21.6 35 424-458 139-173 (552)
98 KOG0804 Cytoplasmic Zn-finger 79.0 64 0.0014 39.5 16.0 109 572-703 347-455 (493)
99 KOG0977 Nuclear envelope prote 78.1 2E+02 0.0043 36.3 30.7 122 692-818 244-365 (546)
100 PF11559 ADIP: Afadin- and alp 77.6 88 0.0019 32.0 15.7 93 441-554 54-146 (151)
101 PF04111 APG6: Autophagy prote 77.5 45 0.00098 38.5 14.0 34 559-592 100-133 (314)
102 KOG4593 Mitotic checkpoint pro 76.6 2.4E+02 0.0052 36.5 48.7 305 260-622 186-518 (716)
103 PF06818 Fez1: Fez1; InterPro 76.5 90 0.002 34.7 15.1 46 649-694 144-193 (202)
104 PF10473 CENP-F_leu_zip: Leuci 76.4 1.1E+02 0.0023 32.3 19.1 87 550-636 9-95 (140)
105 PF04111 APG6: Autophagy prote 76.0 40 0.00087 38.9 13.1 11 766-776 167-177 (314)
106 KOG0995 Centromere-associated 74.5 2.5E+02 0.0053 35.6 45.1 119 472-604 260-378 (581)
107 KOG1103 Predicted coiled-coil 73.1 2.2E+02 0.0047 34.3 17.9 49 475-523 111-160 (561)
108 COG4942 Membrane-bound metallo 71.5 2.5E+02 0.0054 34.4 30.6 63 554-616 136-198 (420)
109 PF14362 DUF4407: Domain of un 71.1 76 0.0016 35.7 13.5 135 236-373 132-281 (301)
110 PF09787 Golgin_A5: Golgin sub 70.8 2.6E+02 0.0057 34.3 31.7 19 748-766 410-428 (511)
111 PF09325 Vps5: Vps5 C terminal 70.7 1.4E+02 0.003 31.9 14.7 66 217-285 162-236 (236)
112 COG4026 Uncharacterized protei 70.2 52 0.0011 37.2 11.6 83 560-646 118-205 (290)
113 PF02841 GBP_C: Guanylate-bind 70.1 1.9E+02 0.004 32.9 16.3 14 170-183 38-51 (297)
114 PF10186 Atg14: UV radiation r 69.3 1.8E+02 0.0039 31.8 18.5 46 457-502 60-105 (302)
115 TIGR01005 eps_transp_fam exopo 69.0 71 0.0015 40.3 14.0 42 195-236 185-226 (754)
116 PF12126 DUF3583: Protein of u 67.6 1.8E+02 0.004 34.2 15.5 121 528-659 4-124 (324)
117 PTZ00266 NIMA-related protein 67.4 65 0.0014 42.9 13.5 20 351-371 223-242 (1021)
118 PF05622 HOOK: HOOK protein; 67.3 1.8 3.9E-05 54.0 0.0 83 462-545 303-385 (713)
119 PRK10884 SH3 domain-containing 66.6 55 0.0012 36.0 10.9 78 288-374 118-195 (206)
120 PF10146 zf-C4H2: Zinc finger- 66.6 1.3E+02 0.0029 33.7 14.0 90 558-647 8-103 (230)
121 PRK04778 septation ring format 65.9 3.4E+02 0.0074 33.8 42.8 42 596-638 472-513 (569)
122 TIGR03185 DNA_S_dndD DNA sulfu 65.9 3.6E+02 0.0077 34.0 39.1 54 387-445 233-286 (650)
123 PF03904 DUF334: Domain of unk 64.7 2.6E+02 0.0055 31.9 16.1 111 572-688 43-154 (230)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 64.6 1.7E+02 0.0036 29.8 17.4 96 523-621 17-112 (132)
125 COG2433 Uncharacterized conser 64.6 87 0.0019 39.7 13.1 61 556-620 434-494 (652)
126 PF14988 DUF4515: Domain of un 63.8 2.4E+02 0.0051 31.2 15.7 94 662-755 8-103 (206)
127 PF09789 DUF2353: Uncharacteri 63.4 3.1E+02 0.0068 32.5 23.2 204 516-737 2-228 (319)
128 PF09789 DUF2353: Uncharacteri 62.3 3.3E+02 0.0071 32.3 22.2 39 773-811 190-228 (319)
129 PF14662 CCDC155: Coiled-coil 60.6 2.8E+02 0.006 30.9 24.6 172 508-699 17-188 (193)
130 PRK00409 recombination and DNA 60.6 1.8E+02 0.0039 37.7 15.5 79 503-590 517-595 (782)
131 KOG0979 Structural maintenance 59.9 5.9E+02 0.013 34.5 24.8 100 488-594 244-347 (1072)
132 PTZ00266 NIMA-related protein 59.7 95 0.0021 41.5 13.0 14 796-809 527-540 (1021)
133 TIGR01069 mutS2 MutS2 family p 59.2 2.2E+02 0.0048 36.9 15.8 38 511-548 520-557 (771)
134 TIGR01843 type_I_hlyD type I s 59.2 3.2E+02 0.007 31.3 18.7 54 245-298 129-182 (423)
135 TIGR01069 mutS2 MutS2 family p 58.0 2.1E+02 0.0046 37.1 15.4 83 504-588 506-588 (771)
136 PF09726 Macoilin: Transmembra 57.4 5.5E+02 0.012 33.4 28.5 33 620-653 600-632 (697)
137 KOG0804 Cytoplasmic Zn-finger 56.7 3.6E+02 0.0078 33.5 15.9 75 469-546 373-447 (493)
138 PF00769 ERM: Ezrin/radixin/mo 56.4 1.6E+02 0.0035 33.1 12.5 49 210-258 4-52 (246)
139 KOG0249 LAR-interacting protei 55.6 4.8E+02 0.01 34.3 17.2 57 445-501 97-155 (916)
140 PF05262 Borrelia_P83: Borreli 54.2 5.3E+02 0.012 32.3 18.0 16 387-402 195-210 (489)
141 KOG0980 Actin-binding protein 54.2 6.9E+02 0.015 33.5 31.5 72 652-724 475-549 (980)
142 KOG4673 Transcription factor T 54.1 6.4E+02 0.014 33.1 38.7 351 202-596 375-767 (961)
143 PF14992 TMCO5: TMCO5 family 53.8 3.5E+02 0.0077 31.6 14.7 94 387-497 3-100 (280)
144 PF15066 CAGE1: Cancer-associa 53.6 5.5E+02 0.012 32.2 26.2 86 556-645 406-491 (527)
145 PF04871 Uso1_p115_C: Uso1 / p 52.9 2.9E+02 0.0062 28.8 14.7 37 552-588 78-114 (136)
146 KOG0972 Huntingtin interacting 52.1 3.1E+02 0.0066 32.6 13.8 154 413-572 205-372 (384)
147 KOG0971 Microtubule-associated 52.0 7.6E+02 0.017 33.4 35.5 135 396-552 379-519 (1243)
148 PF15066 CAGE1: Cancer-associa 50.8 6E+02 0.013 31.9 21.9 41 500-540 388-428 (527)
149 PRK00409 recombination and DNA 50.7 2.6E+02 0.0057 36.3 14.6 78 462-539 504-582 (782)
150 KOG0579 Ste20-like serine/thre 49.9 7.4E+02 0.016 32.6 32.0 142 562-714 879-1022(1187)
151 PF11932 DUF3450: Protein of u 49.8 3.7E+02 0.0079 29.9 13.8 60 579-638 56-115 (251)
152 PF09744 Jnk-SapK_ap_N: JNK_SA 49.7 3.6E+02 0.0078 29.0 13.2 69 464-538 82-157 (158)
153 PF07106 TBPIP: Tat binding pr 49.6 1.6E+02 0.0034 30.8 10.5 19 523-541 72-90 (169)
154 PF09731 Mitofilin: Mitochondr 48.3 6.2E+02 0.013 31.3 22.4 24 428-451 311-334 (582)
155 KOG2129 Uncharacterized conser 48.1 6.4E+02 0.014 31.3 29.1 100 623-722 98-218 (552)
156 PF03962 Mnd1: Mnd1 family; I 48.0 2.5E+02 0.0055 30.5 12.0 26 524-549 70-95 (188)
157 PF04156 IncA: IncA protein; 47.4 3.6E+02 0.0078 28.3 15.1 6 461-466 96-101 (191)
158 KOG0979 Structural maintenance 47.0 9.2E+02 0.02 32.9 26.6 41 758-798 371-411 (1072)
159 cd07672 F-BAR_PSTPIP2 The F-BA 46.8 4.7E+02 0.01 29.4 21.2 112 570-688 105-216 (240)
160 PRK15422 septal ring assembly 46.6 1.3E+02 0.0028 29.4 8.4 55 545-599 12-66 (79)
161 KOG1962 B-cell receptor-associ 45.9 1.6E+02 0.0034 33.2 10.2 56 584-650 156-211 (216)
162 TIGR00634 recN DNA repair prot 45.3 7E+02 0.015 31.0 20.5 71 589-667 311-381 (563)
163 KOG3859 Septins (P-loop GTPase 44.8 2.2E+02 0.0048 33.7 11.4 52 476-530 350-401 (406)
164 KOG4661 Hsp27-ERE-TATA-binding 44.7 3E+02 0.0065 35.0 13.0 41 193-233 248-296 (940)
165 PRK04778 septation ring format 44.7 7.3E+02 0.016 31.0 46.5 361 236-628 26-411 (569)
166 PF12037 DUF3523: Domain of un 44.4 5.8E+02 0.013 29.9 23.4 140 527-679 79-218 (276)
167 PF06705 SF-assemblin: SF-asse 44.1 4.9E+02 0.011 28.9 29.2 191 517-740 28-218 (247)
168 PRK10869 recombination and rep 44.1 7.4E+02 0.016 31.0 22.9 69 722-790 302-370 (553)
169 smart00502 BBC B-Box C-termina 42.7 3E+02 0.0065 26.0 12.5 50 660-709 38-87 (127)
170 KOG1003 Actin filament-coating 42.6 5.5E+02 0.012 29.0 18.5 199 92-347 5-203 (205)
171 PF15070 GOLGA2L5: Putative go 42.3 8.6E+02 0.019 31.2 33.3 251 411-695 12-288 (617)
172 PLN03188 kinesin-12 family pro 42.0 9.3E+02 0.02 33.6 17.6 151 158-334 1079-1250(1320)
173 PF06818 Fez1: Fez1; InterPro 41.9 5.5E+02 0.012 28.9 16.8 99 497-601 61-164 (202)
174 TIGR03545 conserved hypothetic 41.8 2.2E+02 0.0048 35.7 11.7 27 521-547 210-236 (555)
175 PRK06800 fliH flagellar assemb 41.7 70 0.0015 35.4 6.6 71 718-798 33-103 (228)
176 PRK10361 DNA recombination pro 41.6 8.1E+02 0.017 30.7 25.2 130 443-593 64-193 (475)
177 PF03148 Tektin: Tektin family 41.3 6.9E+02 0.015 29.8 31.6 301 225-578 50-365 (384)
178 PRK07353 F0F1 ATP synthase sub 41.0 3.5E+02 0.0076 27.1 11.1 104 352-455 9-128 (140)
179 PF10186 Atg14: UV radiation r 40.7 5.3E+02 0.011 28.3 19.4 17 639-655 140-156 (302)
180 KOG4403 Cell surface glycoprot 40.5 8.3E+02 0.018 30.5 21.8 33 722-754 346-378 (575)
181 TIGR02977 phageshock_pspA phag 40.4 5.4E+02 0.012 28.3 15.0 167 72-245 2-201 (219)
182 KOG0980 Actin-binding protein 39.6 1.1E+03 0.024 31.8 33.5 75 541-615 442-516 (980)
183 PF05700 BCAS2: Breast carcino 39.0 5.7E+02 0.012 28.2 14.0 70 122-192 146-216 (221)
184 PF03962 Mnd1: Mnd1 family; I 39.0 5.5E+02 0.012 28.0 13.7 40 524-563 63-102 (188)
185 PRK15422 septal ring assembly 39.0 3.5E+02 0.0076 26.5 10.0 58 563-624 6-63 (79)
186 KOG3091 Nuclear pore complex, 38.5 6.6E+02 0.014 31.7 14.5 34 445-478 371-404 (508)
187 PF10498 IFT57: Intra-flagella 38.3 4.5E+02 0.0097 31.5 13.0 92 413-504 198-292 (359)
188 COG3883 Uncharacterized protei 38.2 7.1E+02 0.015 29.1 25.3 78 269-346 33-110 (265)
189 PF15462 Barttin: Bartter synd 38.1 68 0.0015 35.5 5.9 133 960-1111 79-212 (224)
190 PRK13455 F0F1 ATP synthase sub 38.0 3.4E+02 0.0074 28.8 10.9 98 358-455 35-150 (184)
191 KOG0962 DNA repair protein RAD 38.0 1.3E+03 0.029 32.2 72.2 98 570-667 824-927 (1294)
192 PF04849 HAP1_N: HAP1 N-termin 37.8 7.6E+02 0.017 29.3 26.5 248 346-659 35-296 (306)
193 PF04871 Uso1_p115_C: Uso1 / p 37.7 4.9E+02 0.011 27.1 13.9 51 503-555 59-109 (136)
194 KOG1924 RhoA GTPase effector D 37.5 40 0.00087 43.5 4.6 15 695-709 992-1006(1102)
195 smart00787 Spc7 Spc7 kinetocho 37.2 7.5E+02 0.016 29.1 19.2 22 413-434 109-136 (312)
196 PF05483 SCP-1: Synaptonemal c 37.1 1.1E+03 0.024 31.0 67.9 231 494-750 522-759 (786)
197 cd07647 F-BAR_PSTPIP The F-BAR 37.1 6.2E+02 0.013 28.0 18.8 48 640-688 168-215 (239)
198 TIGR03007 pepcterm_ChnLen poly 36.9 8.2E+02 0.018 29.4 18.4 32 200-231 157-188 (498)
199 COG3883 Uncharacterized protei 36.2 7.6E+02 0.016 28.8 21.9 149 438-596 65-235 (265)
200 TIGR00634 recN DNA repair prot 36.1 9.5E+02 0.021 29.9 24.7 44 722-765 307-350 (563)
201 PRK10884 SH3 domain-containing 35.9 4.5E+02 0.0098 29.2 11.7 16 426-441 91-106 (206)
202 PRK10698 phage shock protein P 35.9 6.6E+02 0.014 28.0 14.9 176 71-247 1-216 (222)
203 PF09744 Jnk-SapK_ap_N: JNK_SA 35.3 5.8E+02 0.012 27.5 12.0 61 633-701 51-114 (158)
204 PF06008 Laminin_I: Laminin Do 35.3 6.8E+02 0.015 28.0 16.1 173 96-283 92-264 (264)
205 TIGR01843 type_I_hlyD type I s 34.9 7.5E+02 0.016 28.4 23.1 47 567-613 125-171 (423)
206 KOG0943 Predicted ubiquitin-pr 34.6 44 0.00096 44.8 4.4 15 792-806 1142-1156(3015)
207 PF15254 CCDC14: Coiled-coil d 33.9 9E+02 0.02 32.1 15.1 85 604-695 452-536 (861)
208 PF08614 ATG16: Autophagy prot 33.8 3.8E+02 0.0083 28.8 10.6 75 263-337 70-144 (194)
209 PF06160 EzrA: Septation ring 33.7 1.1E+03 0.023 29.7 39.9 355 237-627 23-406 (560)
210 cd07651 F-BAR_PombeCdc15_like 33.3 6.9E+02 0.015 27.5 18.7 128 494-647 88-216 (236)
211 PF07926 TPR_MLP1_2: TPR/MLP1/ 33.2 5.4E+02 0.012 26.2 16.5 29 463-491 20-48 (132)
212 PRK14472 F0F1 ATP synthase sub 32.9 4.7E+02 0.01 27.6 10.9 102 354-455 23-141 (175)
213 KOG0933 Structural maintenance 32.8 1.5E+03 0.032 31.2 66.3 207 139-347 241-485 (1174)
214 PF00430 ATP-synt_B: ATP synth 32.4 2.7E+02 0.006 27.1 8.6 33 415-447 49-81 (132)
215 PRK13454 F0F1 ATP synthase sub 32.2 6.6E+02 0.014 26.9 14.2 45 411-455 77-121 (181)
216 KOG2072 Translation initiation 31.9 1.4E+03 0.031 30.7 39.7 50 496-545 544-593 (988)
217 COG4487 Uncharacterized protei 31.8 1.1E+03 0.024 29.4 18.9 137 664-804 38-179 (438)
218 PF10267 Tmemb_cc2: Predicted 30.4 1.1E+03 0.024 28.9 14.5 31 564-594 211-241 (395)
219 KOG0976 Rho/Rac1-interacting s 30.4 1.5E+03 0.033 30.5 45.9 336 257-631 145-511 (1265)
220 COG3074 Uncharacterized protei 30.2 5.2E+02 0.011 25.1 9.9 65 563-649 6-70 (79)
221 KOG0963 Transcription factor/C 30.1 1.3E+03 0.029 29.8 39.1 205 385-606 122-330 (629)
222 PF03194 LUC7: LUC7 N_terminus 29.8 2.6E+02 0.0056 31.8 8.9 16 801-816 186-201 (254)
223 KOG0994 Extracellular matrix g 29.8 1.8E+03 0.038 31.2 45.7 60 588-651 1614-1673(1758)
224 PF12329 TMF_DNA_bd: TATA elem 29.8 4.8E+02 0.01 24.7 9.2 65 533-607 4-68 (74)
225 PF13863 DUF4200: Domain of un 29.8 5.5E+02 0.012 25.3 14.5 18 572-589 88-105 (126)
226 CHL00019 atpF ATP synthase CF0 29.7 7.1E+02 0.015 26.5 12.5 95 352-455 32-147 (184)
227 cd07605 I-BAR_IMD Inverse (I)- 29.4 8.7E+02 0.019 27.4 13.3 111 682-805 74-194 (223)
228 PF00430 ATP-synt_B: ATP synth 29.0 5.5E+02 0.012 25.0 10.1 88 604-691 27-118 (132)
229 PF12777 MT: Microtubule-bindi 29.0 6.1E+02 0.013 29.7 11.9 88 466-553 14-101 (344)
230 CHL00118 atpG ATP synthase CF0 28.5 6.5E+02 0.014 26.2 10.9 20 472-491 131-150 (156)
231 PF11932 DUF3450: Protein of u 27.5 8.9E+02 0.019 26.9 14.9 45 561-605 31-75 (251)
232 TIGR03017 EpsF chain length de 27.3 1.1E+03 0.023 27.9 19.6 46 191-236 158-203 (444)
233 PF06705 SF-assemblin: SF-asse 27.3 9E+02 0.019 26.9 31.5 158 563-740 14-171 (247)
234 PF03908 Sec20: Sec20; InterP 27.2 4E+02 0.0086 25.6 8.5 81 288-370 8-88 (92)
235 PF05529 Bap31: B-cell recepto 27.2 3.7E+02 0.008 28.6 9.1 35 568-602 157-191 (192)
236 PRK13460 F0F1 ATP synthase sub 27.1 6.6E+02 0.014 26.5 10.8 104 352-455 19-139 (173)
237 PF12718 Tropomyosin_1: Tropom 27.0 7.5E+02 0.016 25.9 18.3 46 567-612 93-141 (143)
238 PRK14471 F0F1 ATP synthase sub 26.2 5.1E+02 0.011 26.9 9.8 96 360-455 15-131 (164)
239 KOG0996 Structural maintenance 25.9 2E+03 0.043 30.5 67.2 126 206-341 414-546 (1293)
240 TIGR03545 conserved hypothetic 25.9 4.6E+02 0.01 33.1 10.9 93 496-599 165-257 (555)
241 COG1842 PspA Phage shock prote 25.8 4.9E+02 0.011 29.3 10.1 107 177-296 29-135 (225)
242 cd07604 BAR_ASAPs The Bin/Amph 25.7 9.7E+02 0.021 26.8 13.2 53 563-615 75-130 (215)
243 TIGR03007 pepcterm_ChnLen poly 25.3 1.3E+03 0.027 27.9 20.5 26 381-406 165-190 (498)
244 PF05615 THOC7: Tho complex su 25.3 7.2E+02 0.016 25.3 10.4 52 546-597 62-113 (139)
245 PRK06800 fliH flagellar assemb 25.1 3.7E+02 0.008 30.2 8.6 50 756-805 36-85 (228)
246 PRK07352 F0F1 ATP synthase sub 24.9 6.8E+02 0.015 26.4 10.5 98 358-455 28-142 (174)
247 CHL00118 atpG ATP synthase CF0 24.7 8.1E+02 0.018 25.5 14.6 22 605-626 51-72 (156)
248 PRK09174 F0F1 ATP synthase sub 24.3 9.9E+02 0.021 26.4 14.8 117 354-486 58-175 (204)
249 PF10473 CENP-F_leu_zip: Leuci 23.8 9E+02 0.019 25.7 19.0 25 572-596 73-97 (140)
250 PF12474 PKK: Polo kinase kina 23.4 8.9E+02 0.019 25.6 14.8 113 564-689 29-142 (142)
251 PRK08476 F0F1 ATP synthase sub 23.2 8.4E+02 0.018 25.2 15.2 25 605-629 36-60 (141)
252 PF03938 OmpH: Outer membrane 23.1 6.7E+02 0.015 25.4 9.8 65 388-452 47-118 (158)
253 PF07139 DUF1387: Protein of u 23.1 1E+03 0.023 28.3 12.3 74 704-782 178-260 (302)
254 PF14988 DUF4515: Domain of un 23.1 1.1E+03 0.023 26.3 23.8 167 629-796 8-201 (206)
255 PF12240 Angiomotin_C: Angiomo 23.0 1E+03 0.022 27.0 11.5 154 124-317 1-165 (205)
256 PF10168 Nup88: Nuclear pore c 22.9 1.8E+03 0.039 29.0 19.8 74 471-547 593-670 (717)
257 PF05622 HOOK: HOOK protein; 22.8 28 0.00061 43.8 0.0 45 91-135 141-202 (713)
258 PF10498 IFT57: Intra-flagella 22.7 6.9E+02 0.015 30.0 11.0 99 199-328 222-320 (359)
259 PF13094 CENP-Q: CENP-Q, a CEN 22.5 4.8E+02 0.01 27.1 8.8 51 502-552 41-91 (160)
260 KOG0570 Transcriptional coacti 22.4 50 0.0011 36.7 1.7 26 171-196 146-171 (223)
261 smart00806 AIP3 Actin interact 22.0 1.4E+03 0.031 28.4 13.4 63 255-324 252-318 (426)
262 PF14197 Cep57_CLD_2: Centroso 21.8 2.4E+02 0.0052 26.5 5.7 55 761-817 1-55 (69)
263 PF05266 DUF724: Protein of un 21.5 1E+03 0.022 26.2 11.2 82 698-787 100-181 (190)
264 PRK13428 F0F1 ATP synthase sub 21.4 1.4E+03 0.029 28.1 13.3 17 604-620 29-45 (445)
265 PF11068 YlqD: YlqD protein; 21.4 7.5E+02 0.016 25.9 9.7 70 721-806 18-87 (131)
266 PF03904 DUF334: Domain of unk 21.4 1.3E+03 0.028 26.7 14.5 85 580-669 37-121 (230)
267 PF08614 ATG16: Autophagy prot 21.4 4.2E+02 0.009 28.5 8.3 89 216-304 72-167 (194)
268 PF04102 SlyX: SlyX; InterPro 21.3 2.2E+02 0.0047 26.4 5.3 52 286-337 2-53 (69)
269 PF06103 DUF948: Bacterial pro 21.2 1.3E+02 0.0028 28.4 3.9 54 171-224 25-78 (90)
270 PRK06569 F0F1 ATP synthase sub 21.0 6.5E+02 0.014 27.1 9.4 47 410-456 55-101 (155)
271 PF12777 MT: Microtubule-bindi 21.0 7.8E+02 0.017 28.8 10.9 21 166-186 73-93 (344)
272 PF10234 Cluap1: Clusterin-ass 20.8 8.4E+02 0.018 28.5 10.8 93 496-591 159-258 (267)
273 KOG0742 AAA+-type ATPase [Post 20.7 1.8E+03 0.039 28.1 22.5 40 614-653 189-228 (630)
274 KOG1924 RhoA GTPase effector D 20.5 1.3E+02 0.0028 39.3 4.8 9 196-204 697-705 (1102)
275 PF15619 Lebercilin: Ciliary p 20.5 1.2E+03 0.025 25.8 19.0 55 243-297 51-105 (194)
276 TIGR02894 DNA_bind_RsfA transc 20.4 5.6E+02 0.012 28.0 8.8 39 567-605 106-144 (161)
277 COG5570 Uncharacterized small 20.3 1.7E+02 0.0038 26.8 4.3 37 544-580 19-55 (57)
278 KOG2391 Vacuolar sorting prote 20.3 2E+02 0.0043 34.5 6.0 83 275-370 215-301 (365)
279 PF05529 Bap31: B-cell recepto 20.3 5.3E+02 0.011 27.5 8.7 27 519-545 157-183 (192)
280 TIGR01010 BexC_CtrB_KpsE polys 20.2 5E+02 0.011 30.1 9.1 34 308-341 277-310 (362)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.49 E-value=2e-07 Score=113.86 Aligned_cols=54 Identities=24% Similarity=0.430 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 000847 565 RLQSQLKQQIETYRHQQELLLK-----EHEDLQQDREKFEKEWEVLDEKRDEINKEQEK 618 (1255)
Q Consensus 565 ~LqseLKeEIe~~R~Qke~Llk-----Eae~Lk~ekekFE~EWE~LDEKR~el~KE~~~ 618 (1255)
.+..+|+++|...|.+...|.+ ..+.|.....+.+..-+.+..+..++..+...
T Consensus 620 ~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 678 (880)
T PRK02224 620 ELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD 678 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344777777777777777743 23444444444444444444443333333333
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=99.45 E-value=1.6e-06 Score=106.09 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=62.7
Q ss_pred HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccch
Q 000847 156 AEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSS 235 (1255)
Q Consensus 156 aeKREEnLkKALgiEKqCvadLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s 235 (1255)
...|.+=+.+.+|+. . +-.+...+.+++..+..++-...+.+.+....+.. ....+++..|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLG-K-LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999983 3 35567777777777777888888888877776666 2245556677777777777666666
Q ss_pred HHHhHHHHhhhhHHHHH
Q 000847 236 ELEMKLQELESRESVIK 252 (1255)
Q Consensus 236 ~~erKL~evEaRE~~Lr 252 (1255)
.+...+..++..-..|.
T Consensus 224 ~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 224 RYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555555444443
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.41 E-value=1e-05 Score=106.31 Aligned_cols=560 Identities=21% Similarity=0.281 Sum_probs=325.5
Q ss_pred chhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHH
Q 000847 198 TLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLR 277 (1255)
Q Consensus 198 KLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~ 277 (1255)
.|.+...=+...+++...++.+...++... .++...+.++|.--..++++.-.........+.++..+++.+.
T Consensus 909 ~l~~~~~~~e~~ee~~~~le~~~~~~~~e~-------~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 909 ELKELKERLEEEEEKNAELERKKRKLEQEV-------QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344555556666666655555322 2333344444444444455555555555555555655555555
Q ss_pred HHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHhhhhhhh
Q 000847 278 EWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAEL-VVKERVGFLA 356 (1255)
Q Consensus 278 eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L-~~kEk~~~~~ 356 (1255)
.--|.=...++++-+.+.-|...++.++.-.+...+.+..|++++..++..+....+.|-.+..-..+| ..+|.
T Consensus 982 kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~----- 1056 (1930)
T KOG0161|consen 982 KLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQES----- 1056 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----
Confidence 444444446777777888888888888888888888888888888888777777766663332222222 11221
Q ss_pred HHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHH--HHHHHHHH--------------
Q 000847 357 YLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARER--VEIQKLLD-------------- 420 (1255)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~--~eIQkLld-------------- 420 (1255)
.. -+......+...|.++|-+|..++.++..-.. ...||.+.
T Consensus 1057 --------------------~~--~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1057 --------------------IE--ELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELE 1114 (1930)
T ss_pred --------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01113455566666677777777666654321 22222222
Q ss_pred ---HHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH---hhhhhhhhhhHHHHHHHHHHHHHhhhHHHH----HHHHH
Q 000847 421 ---DQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL---DQQEFEISHREEKLERREQALDKKSDRVKE----KENDL 490 (1255)
Q Consensus 421 ---eh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~---e~rEvei~h~Eekl~krEqaLe~k~~~lkE----KEkdl 490 (1255)
..++.++..++++..+++..+.-+++-......-. .++|.++..+-..+.+.....+.++..+.. .=.+|
T Consensus 1115 ~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el 1194 (1930)
T KOG0161|consen 1115 AERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAEL 1194 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 23455666777777777777777776644433333 356666666666555555555555444443 33456
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 000847 491 AARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQL 570 (1255)
Q Consensus 491 ~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseL 570 (1255)
.+-+..++.....+..+...|+.+-..|..+-..+...+.++++..-.++ .++.+-+.++.-...-++++..-.++|
T Consensus 1195 ~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l 1271 (1930)
T KOG0161|consen 1195 QEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRL 1271 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666677666677777777777777777777777888888888886666 455555666666677777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 000847 571 KQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQR 650 (1255)
Q Consensus 571 KeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kr 650 (1255)
..|+..+=.|.++....+..|-..+..|+.+-+.+ +.+|. ..+.++-++..-+ -++..+.+.++.+|.-
T Consensus 1272 ~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle----~e~r~k~~l~~~l----~~l~~e~~~l~e~lee 1340 (1930)
T KOG0161|consen 1272 QNENEELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLE----EETREKSALENAL----RQLEHELDLLREQLEE 1340 (1930)
T ss_pred hhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 99999998888888888888888899998887766 33333 3344444444333 3455556777777776
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------------------
Q 000847 651 EIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK---------------------- 708 (1255)
Q Consensus 651 elE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~---------------------- 708 (1255)
+.+....-.-. ..+-.-+=+.|-.|++....+-+.+++.-|+.|...++..++.+|-
T Consensus 1341 e~e~~~~l~r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~ 1419 (1930)
T KOG0161|consen 1341 EQEAKNELERK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDL 1419 (1930)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 66665421100 1111223334444554444444555555555544444444433332
Q ss_pred ------------HHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhc
Q 000847 709 ------------ELQERTRTFEE---KRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKD 773 (1255)
Q Consensus 709 ------------~L~EREk~FEe---ek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kd 773 (1255)
.|..+-+.|+. +-.+-...+....+.+.++..+...+..++...-.+.....+.+.++-..|...
T Consensus 1420 ~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~e 1499 (1930)
T KOG0161|consen 1420 QLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQE 1499 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333332 122334455556666666666666666666666666655566666666666666
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 000847 774 IDELDILCRRLYGDREQFKREKERFLEFVEKHT 806 (1255)
Q Consensus 774 IeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK 806 (1255)
|.+|..+-.-+-+....+...+..+-..++.+.
T Consensus 1500 i~dl~~~~~e~~k~v~elek~~r~le~e~~elQ 1532 (1930)
T KOG0161|consen 1500 IEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQ 1532 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555555555555555444433
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=2.6e-05 Score=100.49 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHh
Q 000847 177 LEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQEL 244 (1255)
Q Consensus 177 LEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~ev 244 (1255)
|.+.|++...+....+-..+..+..+..-+..+..+....+..+..+...+....+....+.++|..+
T Consensus 399 ~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~ 466 (1311)
T TIGR00606 399 VIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL 466 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444444444444444444444444444444444444444444444444444333
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=3e-05 Score=99.91 Aligned_cols=102 Identities=18% Similarity=0.276 Sum_probs=47.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 000847 496 SVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQI---ESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQ 572 (1255)
Q Consensus 496 ~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~---~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKe 572 (1255)
.+.+-+..+.+.++++..-...+..-.++...++.+|..+ ...+...+.++..... -..+|+.
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~--------------~r~~le~ 888 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ--------------RRQQFEE 888 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 3444555555555555555444444455555555555554 4444444444444222 2334444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHH
Q 000847 573 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDE 611 (1255)
Q Consensus 573 EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~e 611 (1255)
+|+.+..+...+-.+..+++.+.+-...+|+.+-..+.+
T Consensus 889 ~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.11 E-value=0.00015 Score=90.12 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH-----HHHHHHHHHHHH
Q 000847 735 AEGEIQEIKSERDQLE-------KEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ-----FKREKERFLEFV 802 (1255)
Q Consensus 735 a~kE~Eev~~E~~rLe-------kEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~-----~~~ERe~fl~~v 802 (1255)
+..++.++..++..+. .+-.++......+..++..+.+.++.|...-.+|.+.|.. |..=...|-..+
T Consensus 956 l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~ 1035 (1164)
T TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIF 1035 (1164)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555443 4556666667777777888888888888877777766533 333466666666
Q ss_pred Hhhc
Q 000847 803 EKHT 806 (1255)
Q Consensus 803 EklK 806 (1255)
..|.
T Consensus 1036 ~~l~ 1039 (1164)
T TIGR02169 1036 AELS 1039 (1164)
T ss_pred HHHh
Confidence 6665
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.08 E-value=0.00036 Score=92.44 Aligned_cols=634 Identities=20% Similarity=0.259 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHhHhhhhhcccceeeeccchhhhHHHHHHHHHHHHHH---HHHhhhhhhhHHHHHHHhHHHHHHhhhhhH
Q 000847 95 ALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEI---LKREQSAHLIAFSEAEKREDNLRRALSMEK 171 (1255)
Q Consensus 95 aL~a~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e~e~~---lKREqaahl~AlsEaeKREEnLkKALgiEK 171 (1255)
-+--.+.+||.+|-+.|+.+-.+-..+-++.-...-....+-..+.- +..+-+-+.--+.+...|-.-|.--|.-|+
T Consensus 1038 e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1038 ELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356678999999999988775444444332222222222222222 233334455556677777788888999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHH
Q 000847 172 QCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVI 251 (1255)
Q Consensus 172 qCvadLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~L 251 (1255)
.|.+-+||+..+|..++...+---+ +..-..-+.+.+...+.+|+.+-++.++..-..-++--..|
T Consensus 1118 ~~r~K~ek~r~dL~~ele~l~~~Le--------------e~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~l 1183 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELE--------------EQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEEL 1183 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999877653211 11222223333333344444444444443333333332233
Q ss_pred HHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhh
Q 000847 252 KRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSK 331 (1255)
Q Consensus 252 rRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~ 331 (1255)
| -.+.........++.--.+.=..-+|.-+..+.-+.+....+.++...-...++..+..+..|-+++-+++.....
T Consensus 1184 r---~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~ 1260 (1930)
T KOG0161|consen 1184 R---KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERL 1260 (1930)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222222222211111111222333333344445555566666555556666656666666665555544433
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHH
Q 000847 332 LKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARE 411 (1255)
Q Consensus 332 Lk~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE 411 (1255)
+ .+|+.+.- -.-.|+..+.+.|+..|..+..+.....+-+
T Consensus 1261 ~-----------~~l~~q~~-----------------------------~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~ 1300 (1930)
T KOG0161|consen 1261 R-----------NDLTAKRS-----------------------------RLQNENEELSRQLEEAEAKLSALSRDKQALE 1300 (1930)
T ss_pred H-----------HHHHHHHH-----------------------------HhhhhHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 3 23332222 0011334444444444444333333333322
Q ss_pred H--HHHHHHHH---HHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHH
Q 000847 412 R--VEIQKLLD---DQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEK 486 (1255)
Q Consensus 412 ~--~eIQkLld---eh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEK 486 (1255)
+ .+.+..++ -.+..|....+.++.|+...|+.++++++.|-.-.-+-=......=.-..+-+-.+....+.+.+-
T Consensus 1301 ~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~ 1380 (1930)
T KOG0161|consen 1301 SQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEEL 1380 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 134567888899999999999999999988753222211111112222233333444446778888
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Q 000847 487 ENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRL 566 (1255)
Q Consensus 487 Ekdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~L 566 (1255)
-+-+..++..+.+....+.+..-.|+.-+..|+.+-+.+..--..+-..-+.++.+..+.. ++..+.+.-+..|
T Consensus 1381 kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~------k~l~e~k~~~e~l 1454 (1930)
T KOG0161|consen 1381 KKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE------KLLAEWKKKLEKL 1454 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 8888999999999999999999999999999988776655443333334555666665555 3345555666666
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000847 567 QSQLKQQIETYRHQQELLL----------KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEER 636 (1255)
Q Consensus 567 qseLKeEIe~~R~Qke~Ll----------kEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~er 636 (1255)
+.+|.+.+...|+....++ ...+.|+.+..+|..+-+.|-.-..++.+-...+.. ...+
T Consensus 1455 ~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek-----------~~r~ 1523 (1930)
T KOG0161|consen 1455 QAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEK-----------EKRR 1523 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 6666666666665544433 333444444444443333333222222222111111 1112
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 000847 637 LKKEECAMRDYVQREIEAIRLDKEA---FEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER 713 (1255)
Q Consensus 637 LK~Ek~~~r~~~krelE~L~~ekEs---F~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~ER 713 (1255)
|-.++..|+..+..--.+|..+.-. +.-.|..-|++ +.+..+.--.+||..|+++--.|..-+.+++..-+.|
T Consensus 1524 le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e----~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k 1599 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE----IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSK 1599 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2222223332222211111111110 11112222222 2233333445677788888777777777888777777
Q ss_pred HHHHHHHH--HHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhHhHHH-------HHHhhhhhcHHHH
Q 000847 714 TRTFEEKR--ERVLNDIAHLKEVAE-------GEIQEIKSERDQLEKEKHEVKVNREKLQ-------EQQLGMRKDIDEL 777 (1255)
Q Consensus 714 Ek~FEeek--~~EL~~In~lke~a~-------kE~Eev~~E~~rLekEr~Ei~~~ke~le-------~q~~em~kdIeeL 777 (1255)
--.+--+| +-.++.|-..-+.++ +.|-..+.-+.-|+.+..++..-++.+. +....++..+++|
T Consensus 1600 ~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL 1679 (1930)
T KOG0161|consen 1600 SEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEEL 1679 (1930)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776654 223333333334444 4444444444444445544444444444 3333344444444
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 000847 778 DILCRRLYGDREQFKREKERFLEFVEKHT 806 (1255)
Q Consensus 778 ~~ls~KLk~qRE~~~~ERe~fl~~vEklK 806 (1255)
..--.-+..-|.++-.++..+.+.|-.+.
T Consensus 1680 ~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1680 REKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 44444444555555556665555555433
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.07 E-value=0.0002 Score=88.53 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=24.0
Q ss_pred hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHH-HHHHHHHHHHHHHHhhc
Q 000847 758 VNREKLQEQQLGMRKDIDELDILCRRLYGDRE-QFKREKERFLEFVEKHT 806 (1255)
Q Consensus 758 ~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE-~~~~ERe~fl~~vEklK 806 (1255)
...+.+..|..++...++.|...-.++.+.=. .|..-++.|....++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~ 1042 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVN 1042 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666655555544322 22222344444444433
No 9
>PRK01156 chromosome segregation protein; Provisional
Probab=99.05 E-value=0.00025 Score=87.84 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHhHHHHHHhhhhhH--HHHHHHHHHHHHHhhhhhhh
Q 000847 157 EKREDNLRRALSMEK--QCVADLEKALRDMGEERAQT 191 (1255)
Q Consensus 157 eKREEnLkKALgiEK--qCvadLEKAL~emr~E~Aei 191 (1255)
..|.+-|.+.+|++. .|...|..++..++.++..+
T Consensus 149 ~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 149 AQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888885 56666666666666665554
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.03 E-value=0.0003 Score=87.07 Aligned_cols=74 Identities=26% Similarity=0.269 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHH
Q 000847 219 KFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSE 292 (1255)
Q Consensus 219 Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~ 292 (1255)
.+..+.+.++++......+..++.++...-..++.....+..+....+..+...+..+..++..+...+..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 320 (1179)
T TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444444444444444444444444444333333333
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=99.01 E-value=0.00032 Score=86.08 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=27.2
Q ss_pred hhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhh
Q 000847 257 SLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREV 302 (1255)
Q Consensus 257 Sf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe 302 (1255)
.+..+....+..+..-...+.+|+..|.+.+..+...+.++++.+.
T Consensus 242 ~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~ 287 (880)
T PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555556667777777666666666666654443
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=98.95 E-value=0.00052 Score=84.30 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHH
Q 000847 744 SERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD 778 (1255)
Q Consensus 744 ~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~ 778 (1255)
.++..+.....++......++.+...+.++|+.+.
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~ 700 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444443
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.93 E-value=0.00091 Score=86.16 Aligned_cols=206 Identities=16% Similarity=0.273 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 000847 559 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 638 (1255)
Q Consensus 559 Er~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK 638 (1255)
++.+|......|.++|+.+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+.+......+..-..+...++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46688888999999999999999999999999998888888888888888888888887777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 639 KEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFE 718 (1255)
Q Consensus 639 ~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FE 718 (1255)
..+..-+..+...+..|..+-..| ..|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~----~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQL----KQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888887777766555 3455566666666666666666666677777777777777776666655555
Q ss_pred HHH-------HHHHhh--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHh
Q 000847 719 EKR-------ERVLND--IAH-LKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQL 768 (1255)
Q Consensus 719 eek-------~~EL~~--In~-lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~ 768 (1255)
+++ ..+|.. |+- .-..++.+++.+..++.+++.-|..|..=+.=++..|.
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~ 809 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWD 809 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 533 334432 111 34456778888888888888888888775555555554
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.92 E-value=0.00072 Score=84.28 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 000847 773 DIDELDILCRRLYGDREQFKREKERFLEFVEKHT 806 (1255)
Q Consensus 773 dIeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK 806 (1255)
+.+++...-..|.+|++.+...+..+...|+.+.
T Consensus 980 ~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 980 EYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666677777777777777666665
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.85 E-value=0.0017 Score=83.44 Aligned_cols=93 Identities=22% Similarity=0.295 Sum_probs=54.9
Q ss_pred HHHHHhHhhhhhcccceeeeccchhhhHHHHHHHHHHHHHH---HHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHH
Q 000847 101 SKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEI---LKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADL 177 (1255)
Q Consensus 101 skLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e~e~~---lKREqaahl~AlsEaeKREEnLkKALgiEKqCvadL 177 (1255)
-.|..++..+++- +++.+-..+..+++++...+...+.- +......+.-.+...+.+-..++..+..-.++...+
T Consensus 216 ~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 293 (1163)
T COG1196 216 QELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293 (1163)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666653 34455566667777777777666533 333444444555556666666666666666666666
Q ss_pred HHHHHHHhhhhhhhhhcc
Q 000847 178 EKALRDMGEERAQTKLFS 195 (1255)
Q Consensus 178 EKAL~emr~E~AeiK~~s 195 (1255)
...+.++-.+.+.++-..
T Consensus 294 ~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 294 KEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666555433
No 16
>PRK01156 chromosome segregation protein; Provisional
Probab=98.84 E-value=0.0013 Score=81.74 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=20.2
Q ss_pred HhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 000847 760 REKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 806 (1255)
Q Consensus 760 ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK 806 (1255)
...+..+...++.+|..|......|+++-+.+..+.+.+-.+++.++
T Consensus 683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~ 729 (895)
T PRK01156 683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK 729 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443334433434433433333
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.48 E-value=0.021 Score=75.84 Aligned_cols=460 Identities=22% Similarity=0.264 Sum_probs=244.8
Q ss_pred hhcHHHHHHHHHHHHHhHh-------hh---hhcccceeeec-------------cch---hhhHHHHHHHHHHHHHHHH
Q 000847 90 RKDREALMEKVSKLEKELY-------DY---QYNMGLLLIEK-------------KEW---TSKIEELRQSFEETQEILK 143 (1255)
Q Consensus 90 r~d~~aL~a~iskLE~Ely-------dY---QynMGLLLiEk-------------KEw---tSk~eel~qa~~e~e~~lK 143 (1255)
+.+.+-|..+++.|++.|- .| +|||..-+.+. ..+ .|+..++++.+-..+.+|.
T Consensus 864 ~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~ 943 (1822)
T KOG4674|consen 864 STNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLE 943 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777641 11 34555554432 222 3556677777888888899
Q ss_pred HhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhH
Q 000847 144 REQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAA 223 (1255)
Q Consensus 144 REqaahl~AlsEaeKREEnLkKALgiEKqCvadLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aA 223 (1255)
+..+.|=--..+++.+-+++.+-+.-=..=+..|++-+-.++.+++-.....+.+++++..-+.++..-...+....
T Consensus 944 ~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~--- 1020 (1822)
T KOG4674|consen 944 SVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA--- 1020 (1822)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH---
Confidence 99988888888888888877765544444566677777778888877778888888888777777654433333222
Q ss_pred HHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHh---HhhHHHHHHhhchhhhhhHHHHHhhhhH
Q 000847 224 EAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQ---REDLREWEKKLQIGDERLSELRRTLNQR 300 (1255)
Q Consensus 224 eaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~q---Re~L~eweKkLqe~eerL~~~qr~LNqR 300 (1255)
-.+++..+.+-. +|..++.+...-..-||.++..- .+.|.....-+......+.++....-++
T Consensus 1021 ----s~~~~~~~~~k~----------dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~ 1086 (1822)
T KOG4674|consen 1021 ----SQANEQIEDLQN----------DLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESR 1086 (1822)
T ss_pred ----HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 223333333332 33344444444444444444322 2233333333344444444444333333
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcc--ccchh
Q 000847 301 EVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSF--SYNVL 378 (1255)
Q Consensus 301 Ee~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 378 (1255)
..-. .+..+.+......|...-...+.|.++|... |++|---|-+|+.|+- ..+..
T Consensus 1087 ~~~l--------------~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~q--------NslLh~qie~~s~~~~~~n~S~~ 1144 (1822)
T KOG4674|consen 1087 HALL--------------SEQERDWSEKEDALEQEVNELKKRIESLEKQ--------NSLLHDQFEELSQQSAVSNLSAM 1144 (1822)
T ss_pred HhHH--------------hhcccchHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhhhcccccc
Confidence 3322 1112222222222211111222333333322 2233333334444422 22222
Q ss_pred hhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhH---------HHHHH
Q 000847 379 LNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSI---------EEEMR 449 (1255)
Q Consensus 379 ~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~---------eeel~ 449 (1255)
..| -+.+...=+ ---+|+++..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-
T Consensus 1145 ~~g-~sdL~~iv~-~LR~Ekei~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~ 1218 (1822)
T KOG4674|consen 1145 LLG-LSDLQNIVS-FLRKEKEIAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEIL 1218 (1822)
T ss_pred ccc-hHHHHHHHH-HHHhHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHH
Confidence 222 000000000 0124555555555555555433221 22455555566666666666665 34555
Q ss_pred HHHHHHh-hhhh------hhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH------
Q 000847 450 SKISALD-QQEF------EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQ------ 516 (1255)
Q Consensus 450 ~K~~~~e-~rEv------ei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~------ 516 (1255)
.++..+. .+|- +..+-..++ +.|..+.++++..=.-|..-++.|+..=....++=+.|+.+..
T Consensus 1219 ~~v~~vNll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~ 1294 (1822)
T KOG4674|consen 1219 EKVEEVNLLRESNKVLREENEANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN 1294 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 2222 223333333 4444444444444444444444444444444444444433322
Q ss_pred -HH-----HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000847 517 -KL-----IADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHED 590 (1255)
Q Consensus 517 -~L-----~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~ 590 (1255)
.| ..|+.++.+|+.+|..+..+++.....|.+-. .++.++|-++|+..|.+-..+..+.++..+
T Consensus 1295 q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~----------~~~~~~q~~~k~qld~l~~e~~~lt~~~~q 1364 (1822)
T KOG4674|consen 1295 QDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELK----------KELNRLQEKIKKQLDELNNEKANLTKELEQ 1364 (1822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23578888888888888888887766665433 356677788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHh
Q 000847 591 LQQDREKFEKEWEVLDEK 608 (1255)
Q Consensus 591 Lk~ekekFE~EWE~LDEK 608 (1255)
|+.-+-+.+.-|.-+-++
T Consensus 1365 l~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1365 LEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999877666
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.39 E-value=0.026 Score=73.04 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=30.3
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 000847 551 QKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA 620 (1255)
Q Consensus 551 e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~ 620 (1255)
..+.-...+..++..-...|..+|..+......+..+.+.++.++..-+.+-..+..++..+.+++..+.
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~ 897 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444444444444444444444444444333
No 19
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.36 E-value=0.025 Score=71.31 Aligned_cols=66 Identities=30% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhh
Q 000847 224 EAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERL 290 (1255)
Q Consensus 224 eaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL 290 (1255)
...++++.+....+..+++.++.....+.....-+.. +.+....+...++.|..|...+...++.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 338 (908)
T COG0419 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKL 338 (908)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666655544444433 44444444444444444444333333333
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.33 E-value=0.02 Score=68.96 Aligned_cols=71 Identities=28% Similarity=0.420 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 000847 733 EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 806 (1255)
Q Consensus 733 e~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK 806 (1255)
.+++.-+++=..|+.+|+++- ...++-..=|.+|-++.|.+|+.-=+-+++-.|+|..|+..++..|++|.
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql---~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQL---GKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444344444444332 22223333478899999999999999999999999999999999999987
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.00 E-value=0.086 Score=63.81 Aligned_cols=98 Identities=24% Similarity=0.253 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q 000847 566 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR 645 (1255)
Q Consensus 566 LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r 645 (1255)
-++++-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++-
T Consensus 351 ~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~l 426 (546)
T PF07888_consen 351 GRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSL 426 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 34566666666666555555678888888888876 68999998888777777666443 677888888888866665
Q ss_pred HHHHHHHHHhhhcHHHHHHHHH
Q 000847 646 DYVQREIEAIRLDKEAFEATMR 667 (1255)
Q Consensus 646 ~~~krelE~L~~ekEsF~~~M~ 667 (1255)
.-.+.|-|.|..++-..|.-|.
T Consensus 427 rv~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 427 RVAQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555555554444
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.98 E-value=0.13 Score=64.76 Aligned_cols=485 Identities=20% Similarity=0.273 Sum_probs=271.5
Q ss_pred HHHHhhhhhhhhhccccchhhHHhHhhhhcc-chhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhH
Q 000847 181 LRDMGEERAQTKLFSEKTLTDANTLLGGIEG-KSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLV 259 (1255)
Q Consensus 181 L~emr~E~AeiK~~sesKLaeA~aLv~~~ee-KslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~ 259 (1255)
|+.++.|+--.+--.|.+.+++++.+.+|.+ =|-+++.----++---|++++-.+++...-- +--.+-
T Consensus 5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~-----------e~q~~~ 73 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQE-----------ENQKAQ 73 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHh-----------hHHHHH
Confidence 5677888888888889999999999999977 2333322222222222333333333322111 112444
Q ss_pred hHHHhHHHHHHHhHhhHHHHHHhhchhh----------hhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhh
Q 000847 260 TEREAHEAAFYKQREDLREWEKKLQIGD----------ERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSS 329 (1255)
Q Consensus 260 ~Erea~E~~~~~qRe~L~eweKkLqe~e----------erL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~ 329 (1255)
.+..+....+ +--.+++-..-.+.... -......|+--.||..+.|.+. ....|++++-.|+...
T Consensus 74 ~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~----lr~~lE~~q~~~e~~q 148 (775)
T PF10174_consen 74 EEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELER----LRKTLEELQLRIETQQ 148 (775)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 5666666666 33223332222211111 1122334444566666655443 3367788888888888
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcc---ccchhhhhhh---hhhHHhhhhHHhhHHhHHHH
Q 000847 330 SKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSF---SYNVLLNFFF---QEADCLRSTVEMKEKRLLTI 403 (1255)
Q Consensus 330 ~~Lk~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~e~~~~~~~Le~KEkeLl~l 403 (1255)
.+|-...+.|..-+..|. . -++|.. -.+..+..+. ..+..+++.|+.+|++...+
T Consensus 149 ~~l~~~~eei~kL~e~L~---~----------------~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 149 QTLDKADEEIEKLQEMLQ---S----------------KGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHHHHHHHHh---h----------------cCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 887777777665554441 1 111111 1111222111 13566778888899998766
Q ss_pred HHHHhh-----HH---HHHHHHHHHHHHH---HHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 000847 404 EEKLNA-----RE---RVEIQKLLDDQRA---ILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERR 472 (1255)
Q Consensus 404 eEKL~a-----RE---~~eIQkLldeh~a---~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~kr 472 (1255)
-+.|-- ++ ...+|++|+.-.+ .|+.-.+..|.|+...+..++---. -+.-..++++.........|.
T Consensus 210 r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~ 287 (775)
T PF10174_consen 210 REQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA--DRDRLDKQLEVYKSHSLAMKS 287 (775)
T ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHHhhHHHHHH
Confidence 443322 12 2356888765433 2333334445555555443321111 122222333333333333332
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 000847 473 EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQK 552 (1255)
Q Consensus 473 EqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~ 552 (1255)
. ++.-.=.|..+.-+|.+...-|.-....-......|+.-+..|-+--.....|..|++-++..++....++...+..
T Consensus 288 k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~ 365 (775)
T PF10174_consen 288 K--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ 365 (775)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 33334445666666777777777777777777778888888888888889999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHH------------HHHHHHH
Q 000847 553 LKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN------------KEQEKIA 620 (1255)
Q Consensus 553 LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~------------KE~~~I~ 620 (1255)
+..+++|.+-+..==.+|+..+|.+=.....|.+.+|.|...-..=+ ..|++-++.|. -.++.-.
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~ 442 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD---RQLDEEKERLSSQADSSNEDEALETLEEAL 442 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 99999987765444445666666665555666666555543322111 11222222222 3333333
Q ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHH
Q 000847 621 DEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMN---QEA 697 (1255)
Q Consensus 621 eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~Emqkre---LE~ 697 (1255)
-+++.+..-+...+++.-.++..=-+.|++++..++..-++|...+ ||+..-+.-++.+-+.|.-+.+-+..+ |+.
T Consensus 443 ~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I 521 (775)
T PF10174_consen 443 REKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-SEKELQLEDAKEEASKLASSQEKKDSEIERLEI 521 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHH
Confidence 3444444444444444444444444567777777777777777655 577777777777777776665555544 446
Q ss_pred HHHHHHHHHHH
Q 000847 698 ELLNRRDKMEK 708 (1255)
Q Consensus 698 ~~~~r~EE~E~ 708 (1255)
.+++.++++++
T Consensus 522 ~lEk~rek~~k 532 (775)
T PF10174_consen 522 ELEKKREKHEK 532 (775)
T ss_pred HHHHhhhHHHH
Confidence 66666666553
No 23
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.19 Score=64.74 Aligned_cols=288 Identities=17% Similarity=0.237 Sum_probs=170.1
Q ss_pred HHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000847 348 VKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILD 427 (1255)
Q Consensus 348 ~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~ 427 (1255)
.+|.-||+-++.++=|.||-| ...+......++.-+.+|...-+|+..-...+.++.= .|+
T Consensus 312 ~kenel~~~~~~~~q~~~~~~--------------~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e-~~~---- 372 (1293)
T KOG0996|consen 312 KKENELFRKKNKLCQYILYES--------------RAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNE-AVK---- 372 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHH-HHH----
Confidence 566777777777666666431 1145666677777788888888887754444444431 111
Q ss_pred HhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhh----hhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH--
Q 000847 428 AKQQEFELELEEKRKSIEEEMRSKISALDQQEF----EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKERE-- 501 (1255)
Q Consensus 428 ~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEv----ei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkE-- 501 (1255)
....+-..++.+++. .++.|+..|+.+.| .++|.=.++.|-+..+++-.++..+.++-.+.=....-+-.
T Consensus 373 ~~~~e~~~~~kn~~~----~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~e 448 (1293)
T KOG0996|consen 373 KEIKERAKELKNKFE----SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTE 448 (1293)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHH
Confidence 122222333333332 33444455554433 34444445555555555555555555444333222222111
Q ss_pred -----HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Q 000847 502 -----KFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIET 576 (1255)
Q Consensus 502 -----ksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~ 576 (1255)
+.+.-+++.|...+..|... -..+..++.++..++..-..++.+....+.+.++|=.-|+..+..+..-.+.
T Consensus 449 i~~L~~~~~~~~~~l~e~~~~l~~~---t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~ 525 (1293)
T KOG0996|consen 449 IEQLEELLEKEERELDEILDSLKQE---TEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEE 525 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222233333333333222 2346678888888889999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH--HHHHH
Q 000847 577 YRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ--REIEA 654 (1255)
Q Consensus 577 ~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k--relE~ 654 (1255)
+-.+..-+++..++.+..--....+...+--+..++.|++.....+=..+...++.=+.++-.-+..|...-. +=|.+
T Consensus 526 lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~a 605 (1293)
T KOG0996|consen 526 LKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDA 605 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 8888877777777777777777777777777777777777777766666666555555555444443333222 23566
Q ss_pred hhhcHHH
Q 000847 655 IRLDKEA 661 (1255)
Q Consensus 655 L~~ekEs 661 (1255)
|.+.+++
T Consensus 606 l~r~kes 612 (1293)
T KOG0996|consen 606 LMRLKES 612 (1293)
T ss_pred HHHHHHc
Confidence 6666654
No 24
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.2 Score=63.42 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=7.9
Q ss_pred hHHHHHHhhhhhH
Q 000847 159 REDNLRRALSMEK 171 (1255)
Q Consensus 159 REEnLkKALgiEK 171 (1255)
|.+=|.+.+|+++
T Consensus 156 r~~il~~l~~l~~ 168 (908)
T COG0419 156 RKEILDELFGLEK 168 (908)
T ss_pred HHHHHHHHhCchh
Confidence 4555666666665
No 25
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.81 E-value=0.23 Score=62.53 Aligned_cols=460 Identities=23% Similarity=0.354 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHhHhhhhhcccceeeeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHH
Q 000847 95 ALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCV 174 (1255)
Q Consensus 95 aL~a~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e~e~~lKREqaahl~AlsEaeKREEnLkKALgiEKqCv 174 (1255)
.+-.-|..|..|| --|.+|+-|.-+...-.+-|+.+.. ++-++.-+-|=++-|=-+..| +
T Consensus 71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------l 130 (775)
T PF10174_consen 71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------L 130 (775)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------H
Confidence 4455566666666 6666666555554444455555555 444433222211111111111 1
Q ss_pred HHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHH
Q 000847 175 ADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRE 254 (1255)
Q Consensus 175 adLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRe 254 (1255)
..|-+.|-+|...+.-.|-+-+..-.+...|.+-++.|-..++ +..-.+.+.+.+.+.+++-..|+
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le-- 196 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLE-- 196 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHH--
Confidence 2245677788888888888888888888888887766665541 11112334444444444443333
Q ss_pred HhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhh-H-HHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhh
Q 000847 255 RLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERL-S-ELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKL 332 (1255)
Q Consensus 255 rlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL-~-~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~L 332 (1255)
.-++.++.....-|+.| ..+++-..+.- . -.|..|...+.+|.+.++.+...+-++.-++..++.+..--
T Consensus 197 -----~lle~~e~~~~~~r~~l---~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r 268 (775)
T PF10174_consen 197 -----SLLERKEKEHMEAREQL---HRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR 268 (775)
T ss_pred -----HHHHHHHHHhhhhhHHH---HHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 22222333332222211 12222111111 1 46888888999888888888777777777776665554432
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHH
Q 000847 333 KEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARER 412 (1255)
Q Consensus 333 k~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~ 412 (1255)
.... ..|....- ...+.++.+|..+..|..|..||..++-+|.....
T Consensus 269 ~~~~-------k~le~~~s--------------------------~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~ 315 (775)
T PF10174_consen 269 DRLD-------KQLEVYKS--------------------------HSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE 315 (775)
T ss_pred HHHH-------HHHHHHHh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 11111111 11122334677777888888888888888776654
Q ss_pred HH------HHHH------HHHHHHHHHH-------hhhHHHHHHHHHhhhHHH----------HHHHHHHHHhhhhhhhh
Q 000847 413 VE------IQKL------LDDQRAILDA-------KQQEFELELEEKRKSIEE----------EMRSKISALDQQEFEIS 463 (1255)
Q Consensus 413 ~e------IQkL------ldeh~a~L~~-------Kk~eFElElE~kRKs~ee----------el~~K~~~~e~rEvei~ 463 (1255)
.- |..| ...|...|.+ +.-+-+..++.+.+++.. ||.-...-++..+..|+
T Consensus 316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~ 395 (775)
T PF10174_consen 316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN 395 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2222 1122222222 222222233333333322 22222223333333332
Q ss_pred -------hhHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHH-hhHHHHHHhHHHHHHH---HH-HHHHHHHhhHHHHH
Q 000847 464 -------HREEKLERREQALDKKSDRVK-----EKENDLAARL-KSVKEREKFVKAEEKK---LE-LEKQKLIADKESLQ 526 (1255)
Q Consensus 464 -------h~Eekl~krEqaLe~k~~~lk-----EKEkdl~~K~-k~LKEkEksl~aeEK~---lE-~ek~~L~~dkEel~ 526 (1255)
..++.|.+++..|+.-.++|. -......+++ +++.++++.+...... .+ .....|..-+.++.
T Consensus 396 ~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~ 475 (775)
T PF10174_consen 396 VLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELK 475 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554 1111111111 2334444433332110 00 00122223333333
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-----------------hhhhcc-HHHHHHHHHHHHHHHH----------------
Q 000847 527 ILKVEIDQIESENAQQELQIQEEC-----------------QKLKIN-EEEKSELLRLQSQLKQ---------------- 572 (1255)
Q Consensus 527 ~lK~elEK~~a~~e~q~~qi~ee~-----------------e~Lkit-eeEr~E~l~LqseLKe---------------- 572 (1255)
.++..++.+...+.+.-.++...+ ++|.|. +.-|.++..|+++|+.
T Consensus 476 ~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ 555 (775)
T PF10174_consen 476 ELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQ 555 (775)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHH
Confidence 333333333333333332222211 222221 2234555555555543
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH----HHHHHHHHHHH
Q 000847 573 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEK----IADEKKKLEKL 629 (1255)
Q Consensus 573 EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~----I~eEre~lek~ 629 (1255)
++..+|.....-..|+|+|..-..+-|.|=..++-|-.+|.++++. ++...+.....
T Consensus 556 ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~ 616 (775)
T PF10174_consen 556 EVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEAT 616 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhh
Confidence 4444555555667788888887777888888888888888888655 45555555543
No 26
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.79 E-value=4.7e-06 Score=103.44 Aligned_cols=509 Identities=24% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHH-------HhhhhhHH
Q 000847 152 AFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEV-------EEKFHAAE 224 (1255)
Q Consensus 152 AlsEaeKREEnLkKALgiEKqCvadLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEv-------E~Kl~aAe 224 (1255)
.+-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+-......+.++-.-++-.|+ |.--..-+
T Consensus 40 ~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e 119 (859)
T PF01576_consen 40 KIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHE 119 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666667777766667777788888877777555555444444443333332222 22234456
Q ss_pred HHHHHhhccchHHHhHH----HHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhH
Q 000847 225 AKLAEVNRKSSELEMKL----QELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQR 300 (1255)
Q Consensus 225 aklAEa~Rk~s~~erKL----~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqR 300 (1255)
+.++++-++|+..--.| ..+.---..|.+.+-.|..|.+..-.++..-=..-..-+|.....+.-|.+++.-+..-
T Consensus 120 ~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~ 199 (859)
T PF01576_consen 120 ATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEES 199 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 77778878876553332 22222223334444444444444444443333333344666666666677777666666
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhh
Q 000847 301 EVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLN 380 (1255)
Q Consensus 301 Ee~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1255)
+..+++........+.++.++...++.....+ ..|+ +.+
T Consensus 200 er~~~el~~~k~kL~~E~~eL~~qLee~e~~~-----------~~l~-r~k----------------------------- 238 (859)
T PF01576_consen 200 ERQRNELTEQKAKLQSENSELTRQLEEAESQL-----------SQLQ-REK----------------------------- 238 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-HHH-----------------------------
Confidence 66666666666666666666666555444433 1111 111
Q ss_pred hhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHH---Hhh
Q 000847 381 FFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISA---LDQ 457 (1255)
Q Consensus 381 ~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~---~e~ 457 (1255)
..-+..|..+...|.. ++. .+..|..+.+..+.+++..|..++++-.+|... +..
T Consensus 239 -------------~~L~~qLeelk~~lee----Etr-----~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk 296 (859)
T PF01576_consen 239 -------------SSLESQLEELKRQLEE----ETR-----AKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSK 296 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------HHHHHHHHhhHHHHHh----Hhh-----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0111222222222221 111 235667778888888888888888887776542 223
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 000847 458 QEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES 537 (1255)
Q Consensus 458 rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a 537 (1255)
-..+|..+-.++ +.....+.+.|.+--+.|..++..+.+.-..+.+.--.|+.-+..|..+-+.+.. +|++..+
T Consensus 297 ~~~El~~~k~K~---e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~ 370 (859)
T PF01576_consen 297 LNAELEQWKKKY---EEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQA 370 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 333444433332 3344444556666667777788888887777888888888888888887766654 5555544
Q ss_pred ---HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHH
Q 000847 538 ---ENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINK 614 (1255)
Q Consensus 538 ---~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~K 614 (1255)
.++....+++.....++ .. ...+..+.|..-.....+..++-.|+.+.......++.|.-....|+.
T Consensus 371 ~~~~LeKKqr~fDk~l~e~k------~~----~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~ 440 (859)
T PF01576_consen 371 AAAELEKKQRKFDKQLAEWK------AK----VEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQD 440 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHH------HH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55665666664433332 22 234556666776777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000847 615 EQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMN 694 (1255)
Q Consensus 615 E~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~Emqkre 694 (1255)
|+.++..+.-...+-+| +-++.+. .+..+++.|..+=+.-. +-+...|..+.-
T Consensus 441 El~dl~~q~~~~~k~v~-eLek~kr-------~LE~e~~El~~~leE~E-------------------~~l~~~E~~~lR 493 (859)
T PF01576_consen 441 ELEDLTSQLDDAGKSVH-ELEKAKR-------RLEQEKEELQEQLEEAE-------------------DALEAEEQKKLR 493 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccchhhhhhhccchH-HHHHHHH-------HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH
Confidence 77776655433322221 1111111 11111111111111111 222345566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcH
Q 000847 695 QEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDI 774 (1255)
Q Consensus 695 LE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdI 774 (1255)
|+..|+.-+-++++.|.+|+..|++.|..=...|-+|..-+..|. +.|.++.-.|++|+.+..+|.--+
T Consensus 494 l~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~-----------k~r~~~~r~kkKLE~~l~eLe~~l 562 (859)
T PF01576_consen 494 LQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEER-----------KERAEALREKKKLESDLNELEIQL 562 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999987655545544443333222 334444455555555555554444
Q ss_pred HHH
Q 000847 775 DEL 777 (1255)
Q Consensus 775 eeL 777 (1255)
+..
T Consensus 563 d~~ 565 (859)
T PF01576_consen 563 DHA 565 (859)
T ss_dssp ---
T ss_pred HHH
Confidence 433
No 27
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.08 Score=65.60 Aligned_cols=217 Identities=24% Similarity=0.371 Sum_probs=116.6
Q ss_pred HHhhhHHH---HHHHHHhhhHHHHHHHHHHHHhhhhhh---hhhh--HHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhhH
Q 000847 427 DAKQQEFE---LELEEKRKSIEEEMRSKISALDQQEFE---ISHR--EEKLERREQALDKKSDRVKEKENDLA-ARLKSV 497 (1255)
Q Consensus 427 ~~Kk~eFE---lElE~kRKs~eeel~~K~~~~e~rEve---i~h~--Eekl~krEqaLe~k~~~lkEKEkdl~-~K~k~L 497 (1255)
|.|+-.|+ +|||..|+-+++.-+..+..++++|.+ -+.+ -++-.|++-+|++++++--+.|..-+ .+-|.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 566666666666655555555555443 2222 23334555667777777666654432 233333
Q ss_pred HHHHHhHHHHHHH--HHHHH-------HHHHhhHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHH
Q 000847 498 KEREKFVKAEEKK--LELEK-------QKLIADKESLQILKV---EIDQIESENAQQELQIQEECQKLKINEEEKSELLR 565 (1255)
Q Consensus 498 KEkEksl~aeEK~--lE~ek-------~~L~~dkEel~~lK~---elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~ 565 (1255)
..+|-.-+-.||. |+-++ +|...+.+.|-.+|+ .++.-+..+..++.++..-.....+-
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~--------- 466 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD--------- 466 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec---------
Confidence 3333332222221 11111 122223333333322 23333334444444444333322211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH-------------Hh
Q 000847 566 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ-------------HS 632 (1255)
Q Consensus 566 LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~-------------~~ 632 (1255)
-..-|++|+.++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ ++
T Consensus 467 -~tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 467 -ITTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred -cchHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 124589999999999999999999988754 34444555555555554322 45
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 000847 633 AEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 667 (1255)
Q Consensus 633 E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 667 (1255)
+-+++...|+.++.+|+..++.|.-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66777777788888888888888777777666655
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.73 E-value=0.39 Score=62.83 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HhhhH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Q 000847 570 LKQQIETYRHQQELLLKEHEDLQQDREKFEKE----WEVLD-EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAM 644 (1255)
Q Consensus 570 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~E----WE~LD-EKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~ 644 (1255)
+++....+..+...|..+...+++++..|..+ |-.+. ++.+..+.-...+..+.+.+..-+.......+.++..+
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l 755 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL 755 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555443 22222 44455555556666777777777777888888888888
Q ss_pred HHHHHHHHHHhhhc
Q 000847 645 RDYVQREIEAIRLD 658 (1255)
Q Consensus 645 r~~~krelE~L~~e 658 (1255)
+..+..+|.+-=..
T Consensus 756 e~~~~~eL~~~GvD 769 (1201)
T PF12128_consen 756 EQQYNQELAGKGVD 769 (1201)
T ss_pred HHHHHHHHHhCCCC
Confidence 88888877655444
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.55 E-value=0.14 Score=65.63 Aligned_cols=105 Identities=22% Similarity=0.240 Sum_probs=47.9
Q ss_pred HHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000847 518 LIADKESLQILKVEIDQIESENAQQELQIQEECQKL-KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 596 (1255)
Q Consensus 518 L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~L-kiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~eke 596 (1255)
..+-++++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-.
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444 4444444444444444455555555555555555555554444
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHH
Q 000847 597 KFEKEWEVLDEKRDEINKEQEKIADE 622 (1255)
Q Consensus 597 kFE~EWE~LDEKR~el~KE~~~I~eE 622 (1255)
.=+.|-+.+..+...|.+-...+..+
T Consensus 433 ~~~ee~~~i~~~i~~l~k~i~~~~~~ 458 (1074)
T KOG0250|consen 433 EEEEEKEHIEGEILQLRKKIENISEE 458 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.53 E-value=0.83 Score=61.32 Aligned_cols=210 Identities=18% Similarity=0.277 Sum_probs=128.8
Q ss_pred HhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHh
Q 000847 217 EEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRT 296 (1255)
Q Consensus 217 E~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~ 296 (1255)
-.|+..|..++..+..+...++..+.+++.+...|++++-....-....+ ++...-..+..+...|.+...++......
T Consensus 292 r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eee 370 (1486)
T PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEV 370 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666667777777777777777778888888888877766654433333 33333455556666666666666666677
Q ss_pred hhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHH---HHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcc
Q 000847 297 LNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDE---INSRLAELVVKERVGFLAYLIYLLYFICAYSLPSF 373 (1255)
Q Consensus 297 LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~kedd---i~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~ 373 (1255)
+.+..+.+.+....+...+.++..++..+......+...+.. +...+..|..-+. +| .+|++
T Consensus 371 LeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~-------------~~--~~~~~ 435 (1486)
T PRK04863 371 VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQ-------------LC--GLPDL 435 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hh--CCCCC
Confidence 777777777777777777777777777776655555554444 3455555555555 22 35666
Q ss_pred ccchhhh---hhhhhhHHhhhhHHhhHHhHHHHHHHHhhHH---------------------------HHHHHHHHHHHH
Q 000847 374 SYNVLLN---FFFQEADCLRSTVEMKEKRLLTIEEKLNARE---------------------------RVEIQKLLDDQR 423 (1255)
Q Consensus 374 ~~~~~~~---~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE---------------------------~~eIQkLldeh~ 423 (1255)
+---+-. -|-..+..+...|...|.+|..++..+..-+ ...-++.++.+-
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~ 515 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQL 515 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 5433222 2222455555555555555555555443322 234466777777
Q ss_pred HHHHHhhhHHHHHHHHHhh
Q 000847 424 AILDAKQQEFELELEEKRK 442 (1255)
Q Consensus 424 a~L~~Kk~eFElElE~kRK 442 (1255)
..|..+..++|-.+++.+.
T Consensus 516 ~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 516 QQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766553
No 31
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.43 E-value=1.1 Score=60.50 Aligned_cols=609 Identities=20% Similarity=0.271 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHhHhhhhhcccceeeeccchh----------------hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000847 94 EALMEKVSKLEKELYDYQYNMGLLLIEKKEWT----------------SKIEELRQSFEETQEILKREQSAHLIAFSEAE 157 (1255)
Q Consensus 94 ~aL~a~iskLE~ElydYQynMGLLLiEkKEwt----------------Sk~eel~qa~~e~e~~lKREqaahl~AlsEae 157 (1255)
..+-++|..|++++-+---+.--||=|+..|. |..++..+... .+..+.-.+...=....|..
T Consensus 575 ~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~ 653 (1822)
T KOG4674|consen 575 NEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKR 653 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 56778899999987766555566666666552 11111111111 11112222222222333333
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhh---hccccchhhHHhHhhhh-------ccchhHHHhhhhhHHHHH
Q 000847 158 KREDNLRRALSMEKQCVADLEKALRDMGEERAQTK---LFSEKTLTDANTLLGGI-------EGKSLEVEEKFHAAEAKL 227 (1255)
Q Consensus 158 KREEnLkKALgiEKqCvadLEKAL~emr~E~AeiK---~~sesKLaeA~aLv~~~-------eeKslEvE~Kl~aAeakl 227 (1255)
++...|.+. +.+|.+-..+||.+.--.+ -+|.-|+.-++--|+.. ++....+..=++..+...
T Consensus 654 ~~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322 2344444444444442222 12223333333333332 233334445566777777
Q ss_pred HHhhccchHHHhHHHHhhhhHHHHHHHHhhhH-------hHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhH
Q 000847 228 AEVNRKSSELEMKLQELESRESVIKRERLSLV-------TEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQR 300 (1255)
Q Consensus 228 AEa~Rk~s~~erKL~evEaRE~~LrRerlSf~-------~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqR 300 (1255)
..++---..+..++.-+++.=+.|+.+-..|. .|.+++.+..+.++-+|...+-.....++-....+..+++|
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~ 806 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR 806 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888888888888776654 44555555555555555554444444444444444444422
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH---HhhhhhhhHHHHHHHHhhccCCCccccch
Q 000847 301 EVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVV---KERVGFLAYLIYLLYFICAYSLPSFSYNV 377 (1255)
Q Consensus 301 Ee~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L~~---kEk~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1255)
+...+.+|..+++++......++...-+.+.-|.+... ..+ .
T Consensus 807 ----------i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~-------------------------~ 851 (1822)
T KOG4674|consen 807 ----------IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELE-------------------------S 851 (1822)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------------------------H
Confidence 33556677777777776666666655554433322111 111 1
Q ss_pred hhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 000847 378 LLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQ---RAILDAKQQEFELELEEKRKSIEEEMRSKISA 454 (1255)
Q Consensus 378 ~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh---~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~ 454 (1255)
.+.-+..++...+..+.+.|.++..|+.+|. .+.++.+..++ ..-..-+-..|+.++++- ..+. ..
T Consensus 852 ~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~-~~l~-------~~ 920 (1822)
T KOG4674|consen 852 ELKSLLTSLDSVSTNIAKLEIKLSELEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEI-TDLK-------EE 920 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHH-HHHH-------HH
Confidence 1122333567777777777888888877775 46777777776 333333444466666544 0111 22
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH--------------------
Q 000847 455 LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELE-------------------- 514 (1255)
Q Consensus 455 ~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~e-------------------- 514 (1255)
+.-..-.|....+.+..-+++|+.---++.+--.++++++..++.+=-++...--.|+.+
T Consensus 921 L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~ 1000 (1822)
T KOG4674|consen 921 LTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLL 1000 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHH
Confidence 222333344444555555555555555555544555555554444433332211112222
Q ss_pred -----HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHH----HHHH---HHHHHHHHHHHHHHHHH
Q 000847 515 -----KQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKS----ELLR---LQSQLKQQIETYRHQQE 582 (1255)
Q Consensus 515 -----k~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~----E~l~---LqseLKeEIe~~R~Qke 582 (1255)
...++.+..++.....+..+....+.+++ ..+.+.+........ .|.. .=.+|+++..+|-.+-.
T Consensus 1001 ~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl---~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~ 1077 (1822)
T KOG4674|consen 1001 DLSREISSLQNELKSLLKAASQANEQIEDLQNDL---KTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELL 1077 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222222 222222222222111 1111 11356677777777777
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH---HHhHHHHhHHHH-----HHH---HHHHHHH
Q 000847 583 LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL---QHSAEERLKKEE-----CAM---RDYVQRE 651 (1255)
Q Consensus 583 ~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~---~~~E~erLK~Ek-----~~~---r~~~kre 651 (1255)
.|-+..+-+...-..|++-|. |++.-|..|.......=+-|+.. +|+=-+.+-.-- .+| ..++.+=
T Consensus 1078 ~Lk~~~~~~~~~l~e~~~~w~---E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~i 1154 (1822)
T KOG4674|consen 1078 KLKKSRESRHALLSEQERDWS---EKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNI 1154 (1822)
T ss_pred HHHhhHHHHHhHHhhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHH
Confidence 777777777777788888885 45555555544443333333322 222111111110 001 2335666
Q ss_pred HHHhhhcHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHH---------HHHHHHHHHHHHHHHHHHH
Q 000847 652 IEAIRLDKEAFEAT---MRHEQLVLSEKAK---NDRRKMLEEFEMQRMNQEA---------ELLNRRDKMEKELQERTRT 716 (1255)
Q Consensus 652 lE~L~~ekEsF~~~---M~hE~s~~~eK~q---~Erad~l~d~EmqkreLE~---------~~~~r~EE~E~~L~EREk~ 716 (1255)
+-.|+++++-|.++ |..|-..+..++. +...|+.+.+-.-+-.-.. .|.+.-+.| +-|.|=-+.
T Consensus 1155 v~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~v-Nll~EsN~~ 1233 (1822)
T KOG4674|consen 1155 VSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEV-NLLRESNKV 1233 (1822)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH-HHHHHhHHH
Confidence 66788888888765 4444444444332 2344444333332222211 111222222 345566677
Q ss_pred HHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHhHH
Q 000847 717 FEEKRERVLNDIAHLKEVAEG---EIQEIKSERDQLEKEKHEVKVNREKL 763 (1255)
Q Consensus 717 FEeek~~EL~~In~lke~a~k---E~Eev~~E~~rLekEr~Ei~~~ke~l 763 (1255)
|.++.++.++.|.-|.+.+++ ++.-+..+...|..+-..+....+.|
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l 1283 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKL 1283 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666655432 33333333334444433333333333
No 32
>PRK11637 AmiB activator; Provisional
Probab=97.37 E-value=0.054 Score=62.90 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=51.6
Q ss_pred HHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhHH
Q 000847 279 WEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYL 358 (1255)
Q Consensus 279 weKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L~~kEk~~~~~~~ 358 (1255)
-++.+.+.+..|.....-|+.-...++.....+...+.++..+++.|......+....+.+..|+..+-.-=. .
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~------~ 139 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGE------H 139 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------C
Confidence 3333334444455555555555666666666677777777777777777777777777777777766543222 2
Q ss_pred HHHHHHhhccCC
Q 000847 359 IYLLYFICAYSL 370 (1255)
Q Consensus 359 ~~~~~~~~~~~~ 370 (1255)
.||-+++-+++.
T Consensus 140 ~~l~vLl~a~~~ 151 (428)
T PRK11637 140 TGLQLILSGEES 151 (428)
T ss_pred cHHHHHhcCCCh
Confidence 344455555553
No 33
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.71 Score=59.44 Aligned_cols=96 Identities=28% Similarity=0.420 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH---HHHHHHHhHHHHhHHHHHHHHHH
Q 000847 571 KQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK---KLEKLQHSAEERLKKEECAMRDY 647 (1255)
Q Consensus 571 KeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre---~lek~~~~E~erLK~Ek~~~r~~ 647 (1255)
+..|........-..+.+..++.+-++|+++|..++-++++..+|.+.+...|- ++..-+..|.+|||.+-+..-
T Consensus 302 k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~-- 379 (1141)
T KOG0018|consen 302 KKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA-- 379 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh--
Confidence 344444555555666778889999999999999999999999999999887554 556666778888887766544
Q ss_pred HHHHHHHhhhcHHHHHHHHHHH
Q 000847 648 VQREIEAIRLDKEAFEATMRHE 669 (1255)
Q Consensus 648 ~krelE~L~~ekEsF~~~M~hE 669 (1255)
..+|+.|.+...+=-++..|+
T Consensus 380 -~~el~~ln~~~r~~~~~ld~~ 400 (1141)
T KOG0018|consen 380 -LEELEVLNRNMRSDQDTLDHE 400 (1141)
T ss_pred -HHHHHHHHHHHHHHHHHHhhH
Confidence 667777776665554444443
No 34
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.13 E-value=0.00011 Score=91.76 Aligned_cols=308 Identities=24% Similarity=0.322 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHhHhhhh-------hcccceeeeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhHHHH
Q 000847 91 KDREALMEKVSKLEKELYDYQ-------YNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNL 163 (1255)
Q Consensus 91 ~d~~aL~a~iskLE~ElydYQ-------ynMGLLLiEkKEwtSk~eel~qa~~e~e~~lKREqaahl~AlsEaeKREEnL 163 (1255)
+.+..|.....+|++|+-++. ...+.|-=.+.-|.+.+++++..+++- .+.+.+-...|..++.-=+.|
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHH
Confidence 344566666677777765554 444555556667777777777666543 122333334556666666789
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHH
Q 000847 164 RRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQE 243 (1255)
Q Consensus 164 kKALgiEKqCvadLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~e 243 (1255)
+..|.-|-.+...|++.|.-+..+++.+|--++.-... .+..+++=---...+|..+...+-+++.+.+.+++.-+-
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~r 353 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKR 353 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988766654333 233333322223446666666666666666666665555
Q ss_pred hhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHh
Q 000847 244 LESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEK 323 (1255)
Q Consensus 244 vEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~k 323 (1255)
+..=-.+++-+.-...+-+...++...+.-..|.+|..++......+-..++-....+-.+ + .....|+++.-
T Consensus 354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~------~-~Lk~~lee~~e 426 (859)
T PF01576_consen 354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETEL------F-KLKNELEELQE 426 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------H-HHHhhhHHHHH
Confidence 5444445555555555666666666666667788888887776666666665555554443 2 44455555555
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHH
Q 000847 324 KIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTI 403 (1255)
Q Consensus 324 kie~~~~~Lk~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~l 403 (1255)
.++......+...++|.--...+..-.+ .+.. .|+....|
T Consensus 427 ~~e~lere~k~L~~El~dl~~q~~~~~k---------------------------------~v~e-------Lek~kr~L 466 (859)
T PF01576_consen 427 QLEELERENKQLQDELEDLTSQLDDAGK---------------------------------SVHE-------LEKAKRRL 466 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhcc---------------------------------chHH-------HHHHHHHH
Confidence 5554444443333333322122222222 1111 22222222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 000847 404 EEKLNARERVEIQKLLDDQRAIL---DAKQQEFELELEEKRKSIEEEMRSKISALDQ 457 (1255)
Q Consensus 404 eEKL~aRE~~eIQkLldeh~a~L---~~Kk~eFElElE~kRKs~eeel~~K~~~~e~ 457 (1255)
|. +..+++.-|++.+..| +.++.-|+++|.+.|.-++-+|..|-.+++.
T Consensus 467 E~-----e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~ 518 (859)
T PF01576_consen 467 EQ-----EKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEE 518 (859)
T ss_dssp ---------------------------------------------------------
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 22 3345666666666554 4567888888888888887777776665554
No 35
>PRK12704 phosphodiesterase; Provisional
Probab=97.09 E-value=0.027 Score=67.65 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 000847 430 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 509 (1255)
Q Consensus 430 k~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK 509 (1255)
+.+++.|+...|..++.++..+ +.+|..+|..|.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544433 445666666677777777777777777777777666666666666655555
Q ss_pred HHHHHHHH
Q 000847 510 KLELEKQK 517 (1255)
Q Consensus 510 ~lE~ek~~ 517 (1255)
+++..+..
T Consensus 132 ~~~~~~~~ 139 (520)
T PRK12704 132 ELEELIEE 139 (520)
T ss_pred HHHHHHHH
Confidence 44443333
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.91 E-value=0.98 Score=50.00 Aligned_cols=186 Identities=19% Similarity=0.249 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhhhccH-HHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHH
Q 000847 521 DKESLQILKVEI----DQIESENAQQELQIQEECQKLKINE-EEKS-ELLRLQS---QLKQQIETYRHQQELLLKEHEDL 591 (1255)
Q Consensus 521 dkEel~~lK~el----EK~~a~~e~q~~qi~ee~e~Lkite-eEr~-E~l~Lqs---eLKeEIe~~R~Qke~LlkEae~L 591 (1255)
+|++|+.|+.-+ ++.+ +++++-..+......+.... ...+ -...++. .|...|+.+-.++--|.-+.+.|
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 556666655543 3333 23444444444444444442 1111 1222233 34467777777777777778888
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---HHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHH-HHHHHHH
Q 000847 592 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---LQHSAEERLKKEECAMRDYVQREIEAIRLDKE-AFEATMR 667 (1255)
Q Consensus 592 k~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek---~~~~E~erLK~Ek~~~r~~~krelE~L~~ekE-sF~~~M~ 667 (1255)
+.+...|...|+..-..+..++.+...+...-..... .+.+.-..|+.|..-++..|..++..|...-. .+-..|.
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~ 160 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVD 160 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeec
Confidence 8888888888887777777777666655544333332 24466778888999999999999998887653 2222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000847 668 H-EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKME 707 (1255)
Q Consensus 668 h-E~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E 707 (1255)
. -...+..-+..=|+++=..+..-+.+++...+.+.+++.
T Consensus 161 ~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~ 201 (312)
T PF00038_consen 161 QFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELR 201 (312)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccc
Confidence 1 123344444444444444444444444444444444443
No 37
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=2.4 Score=53.51 Aligned_cols=251 Identities=25% Similarity=0.332 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000847 524 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLR----------LQSQLKQQIETYRHQQELLLKEHEDLQQ 593 (1255)
Q Consensus 524 el~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~----------LqseLKeEIe~~R~Qke~LlkEae~Lk~ 593 (1255)
.+.+=.++||+-|-.+++|.++-.++.++++--+.+|-+-.| |+.+|-.+-+--|...++=-||.++...
T Consensus 321 Ny~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEa 400 (1118)
T KOG1029|consen 321 NYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREA 400 (1118)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555444444444444 4444443333334444555555555555
Q ss_pred HHHHHHH----HHhhhHHh--HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----------HHHHHHhhh
Q 000847 594 DREKFEK----EWEVLDEK--RDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV----------QREIEAIRL 657 (1255)
Q Consensus 594 ekekFE~----EWE~LDEK--R~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~----------krelE~L~~ 657 (1255)
-|+-.|+ |||-.--+ -..-++|++.|--++.+...++ -|.+-|.-....+...+ +.+++.+.-
T Consensus 401 ar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~-~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~ 479 (1118)
T KOG1029|consen 401 AREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQ-QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTK 479 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhh
Confidence 4544443 77764211 2223456677766665554443 44444444444433322 345555555
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000847 658 DKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEG 737 (1255)
Q Consensus 658 ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~k 737 (1255)
.++--|+.| +.+.-+|| |-..+|.-+--.|..|+..+.+.|-.. .++ .-+..+|+..-.-|+.+..
T Consensus 480 q~e~~isei----~qlqarik-E~q~kl~~l~~Ekq~l~~qlkq~q~a~----~~~-----~~~~s~L~aa~~~ke~irq 545 (1118)
T KOG1029|consen 480 QRELMISEI----DQLQARIK-ELQEKLQKLAPEKQELNHQLKQKQSAH----KET-----TQRKSELEAARRKKELIRQ 545 (1118)
T ss_pred HHHHHHHHH----HHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhhc----cCc-----chHHHHHHHHHHHHHHHHH
Confidence 554444444 44444443 344555555556666666665443211 100 0112223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhH-hHHHHH
Q 000847 738 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYG-DREQFK 792 (1255)
Q Consensus 738 E~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~-qRE~~~ 792 (1255)
-| +-.+..|.+|..--..+-+-++.|..+++.|.-.+-...++|.+ .|..+.
T Consensus 546 ~i---kdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~k 598 (1118)
T KOG1029|consen 546 AI---KDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLK 598 (1118)
T ss_pred HH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22333444444433334444566667777777777777666665 454443
No 38
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=96.85 E-value=0.16 Score=54.10 Aligned_cols=70 Identities=30% Similarity=0.560 Sum_probs=45.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHH
Q 000847 436 ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK 505 (1255)
Q Consensus 436 ElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~ 505 (1255)
++...|..++.|+..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888877787777777666666666666666666666666666655555555555544444
No 39
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=2.8 Score=54.04 Aligned_cols=271 Identities=25% Similarity=0.373 Sum_probs=130.8
Q ss_pred HhhHHhHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhhHHHH--HHHHHhhhHH-----HHHHHHHHHHhhhhhhhh
Q 000847 394 EMKEKRLLTIEEKLNARERVEIQKLLDD---QRAILDAKQQEFEL--ELEEKRKSIE-----EEMRSKISALDQQEFEIS 463 (1255)
Q Consensus 394 e~KEkeLl~leEKL~aRE~~eIQkLlde---h~a~L~~Kk~eFEl--ElE~kRKs~e-----eel~~K~~~~e~rEvei~ 463 (1255)
+.+|.-|.+++|.-..+++ |+.||.. -=-.|+.-|-+++. +|+..|++++ .|+..=+..+++-|.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4578889999999988876 6666543 22333334444432 5777788875 333333333444333332
Q ss_pred ---hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH-------HHH-----------HhhH
Q 000847 464 ---HREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEK-------QKL-----------IADK 522 (1255)
Q Consensus 464 ---h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek-------~~L-----------~~dk 522 (1255)
..-.++.-+-+...-.++.++..=+.|+.++..|.+--..+++.+-++-..| ..| ..+-
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l 327 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLAL 327 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHH
Confidence 2222333333333345556666667777788888775555666543333333 222 2234
Q ss_pred HHHHHHHHHHHHHHhHHHH----------HHH----HHHHHHhhhh------------ccHHHHHHHHHHHH-HHHHHHH
Q 000847 523 ESLQILKVEIDQIESENAQ----------QEL----QIQEECQKLK------------INEEEKSELLRLQS-QLKQQIE 575 (1255)
Q Consensus 523 Eel~~lK~elEK~~a~~e~----------q~~----qi~ee~e~Lk------------iteeEr~E~l~Lqs-eLKeEIe 575 (1255)
..++.++..|++...++.. +.. +|....++.. -+++||+.++|-+- +|+.=|.
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~ 407 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIN 407 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555444332 111 1111111111 14577777776543 3555555
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhh----hHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 000847 576 TYRHQQELLLKEHEDLQQDREKFEKEWEV----LDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 651 (1255)
Q Consensus 576 ~~R~Qke~LlkEae~Lk~ekekFE~EWE~----LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 651 (1255)
..--|..-|.+|.++|+.+...--.+... |++-+.++..=...++..+..+..++ +.+.-|=.|+.+++.-+-.=
T Consensus 408 ~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~-~~Rk~lWREE~~l~~~i~~~ 486 (1200)
T KOG0964|consen 408 DTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQ-DKRKELWREEKKLRSLIANL 486 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666665555443322111111 11222222222223333333333333 33333444444444444444
Q ss_pred HHHhhhcHHHHHHHHH
Q 000847 652 IEAIRLDKEAFEATMR 667 (1255)
Q Consensus 652 lE~L~~ekEsF~~~M~ 667 (1255)
.+.|+....-.++.|-
T Consensus 487 ~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 487 EEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4555555555555554
No 40
>PRK00106 hypothetical protein; Provisional
Probab=96.76 E-value=0.3 Score=59.38 Aligned_cols=75 Identities=28% Similarity=0.486 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHH
Q 000847 431 QEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKK 510 (1255)
Q Consensus 431 ~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~ 510 (1255)
.+++-|+..+|..++.++..... +|..+|..|.+|+..|+++.+.|..+++.|..+.+.|..+++.|...+++
T Consensus 75 lEaeeEi~~~R~ElEkel~eEr~-------rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~ 147 (535)
T PRK00106 75 LEAKEEARKYREEIEQEFKSERQ-------ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433332 34445555555555555555555555555555555555555555444444
Q ss_pred HH
Q 000847 511 LE 512 (1255)
Q Consensus 511 lE 512 (1255)
++
T Consensus 148 ~~ 149 (535)
T PRK00106 148 VE 149 (535)
T ss_pred HH
Confidence 43
No 41
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.74 E-value=3.3 Score=53.55 Aligned_cols=224 Identities=20% Similarity=0.226 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH--HHHhHHH--HhHHHHHHHHHHH
Q 000847 573 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK--LQHSAEE--RLKKEECAMRDYV 648 (1255)
Q Consensus 573 EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek--~~~~E~e--rLK~Ek~~~r~~~ 648 (1255)
+-+..|+|-++|+.|---|.-+.+..-.-|++|--=-+.=.-+.+...-+.+.|+. .++.+-+ ++=..-...+.
T Consensus 316 erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqs-- 393 (1195)
T KOG4643|consen 316 ERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQS-- 393 (1195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhh--
Confidence 44566777777777777777777777777776543111111133334444444443 2222111 11000001110
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHH--
Q 000847 649 QREIEAIRLDKEAFEATMRHEQLVLSEKAK---NDRRKMLEEFEMQRMNQEAE---LLNRRDKMEKELQERTRTFEEK-- 720 (1255)
Q Consensus 649 krelE~L~~ekEsF~~~M~hE~s~~~eK~q---~Erad~l~d~EmqkreLE~~---~~~r~EE~E~~L~EREk~FEee-- 720 (1255)
.++|.+-. =+-.|+-||--|+-|+. ....| .--|+-+||.. ++..++.+...-.-+.+.....
T Consensus 394 -ss~Ee~~S----K~leleke~KnLs~k~e~Leeri~q----l~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~ 464 (1195)
T KOG4643|consen 394 -SSYEELIS----KHLELEKEHKNLSKKHEILEERINQ----LLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSL 464 (1195)
T ss_pred -hhHHHHHH----HHHHHHHHhHhHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 12222111 12233333333332221 11111 22233333333 3333333333333444555444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh---hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHH
Q 000847 721 RERVLNDIAHLKEVAEGEIQEIKSE----RDQLEKEKHEVK---VNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKR 793 (1255)
Q Consensus 721 k~~EL~~In~lke~a~kE~Eev~~E----~~rLekEr~Ei~---~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ 793 (1255)
..-+++..+++-+-...+.++...- ...|..-..++. ..+..+++|.-.+-...+.++....-|...--.+-.
T Consensus 465 e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ 544 (1195)
T KOG4643|consen 465 ENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE 544 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4456666776666555555544333 222322222222 234455555555555555555555555555555677
Q ss_pred HHHHHHHHHHhhcc
Q 000847 794 EKERFLEFVEKHTS 807 (1255)
Q Consensus 794 ERe~fl~~vEklK~ 807 (1255)
|+.+++.+|..|+.
T Consensus 545 ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 545 ENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHH
Confidence 88899999999886
No 42
>PRK11637 AmiB activator; Provisional
Probab=96.59 E-value=0.86 Score=53.22 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=12.7
Q ss_pred hHHhhhhHHhhHHhHHHHHHHHhhHHH
Q 000847 386 ADCLRSTVEMKEKRLLTIEEKLNARER 412 (1255)
Q Consensus 386 ~~~~~~~Le~KEkeLl~leEKL~aRE~ 412 (1255)
+..+...+...+.+|..++.+|..+..
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555544443
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.59 E-value=2.5 Score=50.20 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 000847 542 QELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIAD 621 (1255)
Q Consensus 542 q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~e 621 (1255)
+...+......++....+..++...-.+|...|..+|.....+..+...|+.+.++.+..=..+.++-.++..++..+..
T Consensus 314 ~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 33333333333333333333433334444444444444444444444444444444444433344444444444444444
Q ss_pred HHHHH
Q 000847 622 EKKKL 626 (1255)
Q Consensus 622 Ere~l 626 (1255)
++..+
T Consensus 394 ~~~~~ 398 (562)
T PHA02562 394 TKSEL 398 (562)
T ss_pred HHHHH
Confidence 44333
No 44
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.58 E-value=0.12 Score=62.10 Aligned_cols=76 Identities=29% Similarity=0.480 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 000847 430 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 509 (1255)
Q Consensus 430 k~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK 509 (1255)
+.+++-|+..+|..++.+++.+ +.+|..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.|...++
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555665555554443 444555566666666666666666666666666666666666665555444
Q ss_pred HHH
Q 000847 510 KLE 512 (1255)
Q Consensus 510 ~lE 512 (1255)
++.
T Consensus 126 e~~ 128 (514)
T TIGR03319 126 ELE 128 (514)
T ss_pred HHH
Confidence 443
No 45
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.57 E-value=0.66 Score=50.46 Aligned_cols=144 Identities=28% Similarity=0.309 Sum_probs=79.9
Q ss_pred hhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhh
Q 000847 208 GIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGD 287 (1255)
Q Consensus 208 ~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~e 287 (1255)
.++.++-+++.++..|++-.+-++|+-..++-.|..++.|=.......-.+....+..+..+..-...+..=.-++.+.+
T Consensus 19 ~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE 98 (237)
T PF00261_consen 19 EAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELE 98 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444443333333333333333222222222222223345566667
Q ss_pred hhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHH---HHHHHHHHHhh
Q 000847 288 ERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEIN---SRLAELVVKER 351 (1255)
Q Consensus 288 erL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~---~rla~L~~kEk 351 (1255)
.+|-+....+..-+.+.-|..+-|...+.+|+.+...++..-..+++.+..|. ..|..|-..+.
T Consensus 99 ~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 99 QQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 77777777777777777788888888888888888888888888888777655 44444444444
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=4.3 Score=52.62 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=15.9
Q ss_pred cCCCCCCccchHHHhhhhhhh---ccCCC
Q 000847 868 LGRADSGGHMSWLRKCTSKIF---SISPI 893 (1255)
Q Consensus 868 ~~sp~S~~~~SwlrKCtskIF---k~SP~ 893 (1255)
+++--|||-=|.+-=| .|| +|+|.
T Consensus 1079 SL~ELSGGQRSLVALs--LIlamL~fkPA 1105 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALS--LILAMLKFKPA 1105 (1174)
T ss_pred HHHHhcCchHHHHHHH--HHHHHHcCCCC
Confidence 5566788888888766 554 45553
No 47
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.55 E-value=0.31 Score=58.81 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=38.9
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 000847 438 EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKL 511 (1255)
Q Consensus 438 E~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~l 511 (1255)
...+..+++++..++.+++ .++..++..+.+||+.|+.+.+.|..++..|+.+-+.|..+++.|...+++|
T Consensus 50 ke~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 50 KEALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666555 4556667777777776666655555555555555555544444444444333
No 48
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.48 E-value=5.3 Score=52.66 Aligned_cols=228 Identities=26% Similarity=0.294 Sum_probs=115.0
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 000847 396 KEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELE---EKRKSIEEEMRSKISALDQQEFEISHREEKLERR 472 (1255)
Q Consensus 396 KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE---~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~kr 472 (1255)
..+.+..|+.- ...+..+++++.+.+.+.=+... .-.+|+ .++++.+.++..+-.++-| -+++.-++++.+-
T Consensus 432 ~~~~~~~le~~-l~~~~~~~~~~~~~~~~~~~~~~--~~keL~e~i~~lk~~~~el~~~q~~l~q--~~~ke~~ek~~~~ 506 (1317)
T KOG0612|consen 432 IHKTLQILEQS-LVNEMQEKEKLDEKCQAVAELEE--MDKELEETIEKLKSEESELQREQKALLQ--HEQKEVEEKLSEE 506 (1317)
T ss_pred cccchhhcccc-hhhHHHHhhhHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHH
Confidence 44455555554 34455566666555444332211 112222 2344444455442222222 2233344444444
Q ss_pred HHHHHHhhhHHHHHHHHH---HHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000847 473 EQALDKKSDRVKEKENDL---AARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE 549 (1255)
Q Consensus 473 EqaLe~k~~~lkEKEkdl---~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee 549 (1255)
+..+.+-++.+..++..| ..+...+--....+.+..|+|+.....+..+-+...++..-..-.-..+..++......
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~ 586 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDL 586 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccH
Confidence 433333333333333222 22222222223333334444444444444444433333333333333444444455556
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH-HHHHH
Q 000847 550 CQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEK-KKLEK 628 (1255)
Q Consensus 550 ~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEr-e~lek 628 (1255)
.+.|...++.-..+..+..+|..+.+.+|.|.-.+..+..+|+.+-. .|.+.-..++++...+-+.| ++.+.
T Consensus 587 ~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~-------sL~~~~~~~~~~l~k~~el~r~~~e~ 659 (1317)
T KOG0612|consen 587 EDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEIS-------SLEETLKAGKKELLKVEELKRENQER 659 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 67888888888899999999999999999999988888888776554 44555555555555555443 33444
Q ss_pred HHHhHHH
Q 000847 629 LQHSAEE 635 (1255)
Q Consensus 629 ~~~~E~e 635 (1255)
+-.+|.+
T Consensus 660 ~~~~ek~ 666 (1317)
T KOG0612|consen 660 ISDSEKE 666 (1317)
T ss_pred HHHHHHH
Confidence 4444443
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.27 E-value=0.85 Score=51.86 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=116.0
Q ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 000847 477 DKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKIN 556 (1255)
Q Consensus 477 e~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lkit 556 (1255)
=+...++.-|..=++=+++-+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +.
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~ 204 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence 3444555556666666666666655555555555555555555555555555555555555555555555444333 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000847 557 EEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEER 636 (1255)
Q Consensus 557 eeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~er 636 (1255)
.-+..++. .||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.+
T Consensus 205 ~~D~~eL~----~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 205 SCDQEELE----ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR 280 (325)
T ss_pred hcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 33444554 45677777777778888889999999999999999999999999999999998888888899999999
Q ss_pred hHHHHHHHHHHH
Q 000847 637 LKKEECAMRDYV 648 (1255)
Q Consensus 637 LK~Ek~~~r~~~ 648 (1255)
||.+-+.++...
T Consensus 281 Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 281 LKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999988887643
No 50
>PRK00106 hypothetical protein; Provisional
Probab=96.20 E-value=1.1 Score=54.62 Aligned_cols=126 Identities=16% Similarity=0.308 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHh
Q 000847 441 RKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIA 520 (1255)
Q Consensus 441 RKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~ 520 (1255)
+..+++++..++.+++ .++......+.+||+.|+.+.+.|..++..|+.+-+.|..++ ..|..
T Consensus 74 ~lEaeeEi~~~R~ElE---kel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~ke--------------keLe~ 136 (535)
T PRK00106 74 LLEAKEEARKYREEIE---QEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKE--------------QSLTD 136 (535)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
Confidence 3334455555555544 222222224555555544444444333333333333333333 33333
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 000847 521 DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE--LLRLQSQLKQQIETYR-HQQELLLKEHE 589 (1255)
Q Consensus 521 dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E--~l~LqseLKeEIe~~R-~Qke~LlkEae 589 (1255)
-++++...+.+++.+......++.+|. -.|.+|=-+ +..+..+++.++..+- ....+...+++
T Consensus 137 reeeLee~~~~~~~~~~~~~~~Le~~a------~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~ 202 (535)
T PRK00106 137 KSKHIDEREEQVEKLEEQKKAELERVA------ALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSD 202 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433 233333333 3345666777776543 33334444443
No 51
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.01 E-value=6.6 Score=49.28 Aligned_cols=319 Identities=20% Similarity=0.232 Sum_probs=175.9
Q ss_pred hHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHH
Q 000847 258 LVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERED 337 (1255)
Q Consensus 258 f~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~ked 337 (1255)
+..|+-.+|++++.----+.+-+-+++...--|.+.|..+||=++..+.-.-.|+....+-+.+...++.++..|+..+.
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~ 310 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESES 310 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887777777888888888888888999999999999988889998888888888888888888866444
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhh-hhhHHhhhhHHhhHHhHHHHHHHHhhHH---HH
Q 000847 338 EINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFF-QEADCLRSTVEMKEKRLLTIEEKLNARE---RV 413 (1255)
Q Consensus 338 di~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~Le~KEkeLl~leEKL~aRE---~~ 413 (1255)
.-..--..|..-=+.++ .+.+-. ..+...........-.+..|+-+++.=. +.
T Consensus 311 tq~~le~~lq~~~k~~~-----------------------qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~ 367 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLI-----------------------QLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTT 367 (786)
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222221111000 000000 0011111122222333334444443322 24
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH------HHHHHhhhHHHHHH
Q 000847 414 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERRE------QALDKKSDRVKEKE 487 (1255)
Q Consensus 414 eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krE------qaLe~k~~~lkEKE 487 (1255)
++|.+- .++....-+=+||..+...+++..+.+.. +|+++...-.-|++.. .-+++-.+.|+..+
T Consensus 368 Eqqr~~-----~~ed~lk~l~~eLqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~e 438 (786)
T PF05483_consen 368 EQQRLK-----KNEDQLKILTMELQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTE 438 (786)
T ss_pred HHHHHH-----HhHHHHHHHHHHHHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555552 23334444556777666667776665542 3333333333333333 33555556666666
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc-------cHHHH
Q 000847 488 NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI-------NEEEK 560 (1255)
Q Consensus 488 kdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki-------teeEr 560 (1255)
.+|... |.-+|+.+.-.+-.|.... +.=+.+-..++.++..++++..+-.+-..+... +.-++
T Consensus 439 qel~~l---lq~~ekev~dLe~~l~~~~-------~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~ 508 (786)
T PF05483_consen 439 QELTGL---LQIREKEVHDLEIQLTTIK-------ESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQET 508 (786)
T ss_pred HHHHHH---HHhhhhHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666544 3344455544444444443 333333334444444444333222222111111 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 000847 561 SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEK 618 (1255)
Q Consensus 561 ~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~ 618 (1255)
+...-=-.++.+-|...+.|.+-++++++.|......+-.|.+.+-+.-+...-|.++
T Consensus 509 ~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 509 SDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222356778889999999999999999888888877777776655555555544
No 52
>PRK12704 phosphodiesterase; Provisional
Probab=95.97 E-value=0.39 Score=58.10 Aligned_cols=126 Identities=20% Similarity=0.289 Sum_probs=62.4
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Q 000847 438 EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQK 517 (1255)
Q Consensus 438 E~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~ 517 (1255)
...+..+++++...+.+++ .+++.++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|...++
T Consensus 56 ke~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~-------- 124 (520)
T PRK12704 56 KEALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ-------- 124 (520)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3333444466666665554 45566666676666665555555544444444444444444443333333
Q ss_pred HHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 518 LIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE--LLRLQSQLKQQIETYRHQQELLLK 586 (1255)
Q Consensus 518 L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E--~l~LqseLKeEIe~~R~Qke~Llk 586 (1255)
++..++.+++++......++.+|. -.|.+|=-+ +..+..+++.++..+-.+.+.-.+
T Consensus 125 ------eLe~~~~~~~~~~~~~~~~l~~~a------~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
T PRK12704 125 ------ELEKKEEELEELIEEQLQELERIS------GLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK 183 (520)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444333333332 223333333 345677888888875544444433
No 53
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=9.4 Score=49.96 Aligned_cols=214 Identities=21% Similarity=0.231 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH----
Q 000847 572 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY---- 647 (1255)
Q Consensus 572 eEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~---- 647 (1255)
.+++.++.+++-|+.+..+|.. +.+ |-+...-|..-|+..+.+..-+-+.+.+-+ +.+.+|...+.+.
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l----~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSL----EQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 4566666666666666666666 444 555556666666666666555555554222 3334444444443
Q ss_pred ------HHHHHHHhhhcHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000847 648 ------VQREIEAIRLDKEAFEATMRHEQLVLSE----------------KAKNDRRKMLEEFEMQRMNQEAELLNRRDK 705 (1255)
Q Consensus 648 ------~krelE~L~~ekEsF~~~M~hE~s~~~e----------------K~q~Erad~l~d~EmqkreLE~~~~~r~EE 705 (1255)
+++.++.......+....|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+..
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~ 803 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQK 803 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecc
Confidence 3455555555555555555421111111 128888888999999999999888644431
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhh
Q 000847 706 MEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLY 785 (1255)
Q Consensus 706 ~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk 785 (1255)
--..--+|.+.+=+.-+.+++.+.--.+.+.+++-++ .+|.. ++ ..-=++.+.+|.+.++...-|+..-.||.
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~ 876 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELTKLD 876 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112223444555555666666666666666666666 44443 22 22233455566666666666665555555
Q ss_pred Hh-------HHHHHHHHHHHHH
Q 000847 786 GD-------REQFKREKERFLE 800 (1255)
Q Consensus 786 ~q-------RE~~~~ERe~fl~ 800 (1255)
.+ ++.+..||-.+|.
T Consensus 877 ~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 877 KEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 54 5555555555554
No 54
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.61 E-value=4.5 Score=44.24 Aligned_cols=71 Identities=25% Similarity=0.326 Sum_probs=35.2
Q ss_pred hHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhc
Q 000847 214 LEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQ 284 (1255)
Q Consensus 214 lEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLq 284 (1255)
..+...+-.|...+..+..+-..++.++..+|+.-..|.|..-.+..+.+..+..+..--..|.+-++.+.
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~d 74 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRAD 74 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555666666666666666665555555444433333333333333333
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.59 E-value=15 Score=50.12 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=34.1
Q ss_pred HhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 000847 364 FICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKS 443 (1255)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs 443 (1255)
||--|.||+=. |+-..++.++..+..-..-|-++ +...+-+..+..|+.+=-.- =-.+|=.--+..|..
T Consensus 216 fl~~yll~e~~------~v~~~i~~m~~~l~~~r~t~~~~--~~tq~drdlFk~lI~~~~~~---~aad~~r~~eERR~l 284 (1486)
T PRK04863 216 SLRDYLLPENS------GVRKAFQDMEAALRENRMTLEAI--RVTQSDRDLFKHLITESTNY---VAADYMRHANERRVH 284 (1486)
T ss_pred HHHHHcCCCCh------hhhHHHHHHHHHHHHHHHHHHHH--HhCccHHHHHHHHhhhhhhh---hHHHHhhCHHHHHHH
Confidence 55566666431 12223455555555544444444 33444556666665542211 123453333445555
Q ss_pred HHHH
Q 000847 444 IEEE 447 (1255)
Q Consensus 444 ~eee 447 (1255)
||+-
T Consensus 285 iEEA 288 (1486)
T PRK04863 285 LEEA 288 (1486)
T ss_pred HHHH
Confidence 5554
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.49 E-value=7.7 Score=46.18 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 000847 570 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEK 618 (1255)
Q Consensus 570 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~ 618 (1255)
+..++..++...+.|.....++..+....+.+|..+...++++.++...
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666667777777777777888888888888888888888765
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.39 E-value=10 Score=46.88 Aligned_cols=327 Identities=19% Similarity=0.287 Sum_probs=150.3
Q ss_pred hhhhHHhhHHhHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHh---------------hhHHHHHHHHHhhhHHHHHHHH
Q 000847 389 LRSTVEMKEKRLLTIEEKLNARERVEIQKL--LDDQRAILDAK---------------QQEFELELEEKRKSIEEEMRSK 451 (1255)
Q Consensus 389 ~~~~Le~KEkeLl~leEKL~aRE~~eIQkL--ldeh~a~L~~K---------------k~eFElElE~kRKs~eeel~~K 451 (1255)
.-....-+++|=.+|++ |+.|=-+-|.|+ |..|+..|..- +-=||+|+-.-|+.+++--
T Consensus 30 as~ir~sR~rEK~El~~-LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~--- 105 (546)
T KOG0977|consen 30 ASPIRDSREREKKELQE-LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETA--- 105 (546)
T ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHH---
Confidence 33334445554444443 555555666654 56666666554 3346666666666555433
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000847 452 ISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 531 (1255)
Q Consensus 452 ~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~e 531 (1255)
.+....|-.+.+-...++.-..++.++++.+..==..++.+...|...+-++..-+...-.=-+++.-||.+
T Consensus 106 --------~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 106 --------RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred --------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444445555555544444455555555555544444444444444555666677
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hhhHHhH
Q 000847 532 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW--EVLDEKR 609 (1255)
Q Consensus 532 lEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EW--E~LDEKR 609 (1255)
...+...|..=+.+++.|.- -|.++.---..|+++|+-+..+-.. ++.+++.+|..+- +.=++=+
T Consensus 178 n~rl~~~l~~~r~~ld~Etl-------lr~d~~n~~q~Lleel~f~~~~h~~------eI~e~~~~~~rd~t~~~r~~F~ 244 (546)
T KOG0977|consen 178 NSRLREELARARKQLDDETL-------LRVDLQNRVQTLLEELAFLKRIHKQ------EIEEERRKARRDTTADNREYFK 244 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHhccHH------HHHHHHHHHhhcccccchHHHH
Confidence 77777766666666665431 1233333333455555555433221 2233344444443 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH--H-HHHHHHHHHHHHHHHHHH
Q 000847 610 DEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR--H-EQLVLSEKAKNDRRKMLE 686 (1255)
Q Consensus 610 ~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~--h-E~s~~~eK~q~Erad~l~ 686 (1255)
.+|..=+.+|-.+=++ ..+.=+.+++.-|++.+..++..=+.+-..-. + |...+-..|-.=|+++ .
T Consensus 245 ~eL~~Ai~eiRaqye~----------~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~kl-s 313 (546)
T KOG0977|consen 245 NELALAIREIRAQYEA----------ISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKL-S 313 (546)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhh-c
Confidence 3343333333332222 22233334444444444444421111111111 0 1111111111111111 1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 000847 687 EFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ 766 (1255)
Q Consensus 687 d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q 766 (1255)
|+|..- ..+.++.+.++..|.+=-+.|+..-..-- .+|..|.-|+..|-.|.+.+--.+.-|+-+
T Consensus 314 elE~~n----~~L~~~I~dL~~ql~e~~r~~e~~L~~kd-----------~~i~~mReec~~l~~Elq~LlD~ki~Ld~E 378 (546)
T KOG0977|consen 314 ELESRN----SALEKRIEDLEYQLDEDQRSFEQALNDKD-----------AEIAKMREECQQLSVELQKLLDTKISLDAE 378 (546)
T ss_pred cccccC----hhHHHHHHHHHhhhhhhhhhhhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHhhchHhHHHhH
Confidence 343333 34556777888888888888886533222 334444455555555555444444444433
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.15 E-value=12 Score=46.39 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHH
Q 000847 738 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRR 783 (1255)
Q Consensus 738 E~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~K 783 (1255)
.+.++..++..++++..++..+...++++...++++|+.|...-.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555444333
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.66 E-value=7.5 Score=42.07 Aligned_cols=143 Identities=20% Similarity=0.367 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 000847 560 KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 639 (1255)
Q Consensus 560 r~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~ 639 (1255)
+..-+-|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|.... .+++
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k----~rl~- 96 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK----ARLK- 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-
Confidence 45667888899999999999999999999999999999999999999999999998887775555444332 1111
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHH
Q 000847 640 EECAMRDYVQREIEAIRLDKEAFE---ATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ-EAELLNRRDKMEKELQERTR 715 (1255)
Q Consensus 640 Ek~~~r~~~krelE~L~~ekEsF~---~~M~hE~s~~~eK~q~Erad~l~d~EmqkreL-E~~~~~r~EE~E~~L~EREk 715 (1255)
....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||-.+ .+-++++...+...|.-|+.
T Consensus 97 -------~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 97 -------ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23556666666666554 3444555555544442 233332 22222 33455556666666666665
Q ss_pred HHHH
Q 000847 716 TFEE 719 (1255)
Q Consensus 716 ~FEe 719 (1255)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 60
>PRK09039 hypothetical protein; Validated
Probab=94.57 E-value=11 Score=43.68 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Q 000847 568 SQLKQQIETYRHQQELLLKE-HEDLQQDREKFEK 600 (1255)
Q Consensus 568 seLKeEIe~~R~Qke~LlkE-ae~Lk~ekekFE~ 600 (1255)
.+.+..|+.+....+.++++ +.+|..=|..|-.
T Consensus 168 ~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~ 201 (343)
T PRK09039 168 RESQAKIADLGRRLNVALAQRVQELNRYRSEFFG 201 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444455555555544444 5555555555543
No 61
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.55 E-value=22 Score=46.53 Aligned_cols=126 Identities=25% Similarity=0.402 Sum_probs=83.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH------HhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 000847 472 REQALDKKSDRVKEKENDLAAR------LKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 545 (1255)
Q Consensus 472 rEqaLe~k~~~lkEKEkdl~~K------~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~q 545 (1255)
.|..+.+.+..+..+..||-+| +++-+++++-|+.+ |+.-+.-+..-++..+.++-|++-+...+++...+
T Consensus 357 ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~e---i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~ 433 (1200)
T KOG0964|consen 357 EEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSE---IEKLKRGINDTKEQENILQKEIEDLESELKEKLEE 433 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHH---HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444454433 34456677776654 45666777777888888888888888777777777
Q ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000847 546 IQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEK 600 (1255)
Q Consensus 546 i~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~ 600 (1255)
|.+-...+.-++..-+++...-..||++.|.+-.....|--|.-.|+...++.+.
T Consensus 434 i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~ 488 (1200)
T KOG0964|consen 434 IKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEE 488 (1200)
T ss_pred HHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666677777777777888888877666666666666666665555543
No 62
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.55 E-value=1.7 Score=48.14 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh
Q 000847 708 KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD 787 (1255)
Q Consensus 708 ~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~q 787 (1255)
++|+.+...|+.-+..-++.+.+++..- +=|++..-|+..|..|| ...-+++-.|+.||..|...=+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er-------~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER-------MAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999888888888877654 44555555555555554 455677888999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHHhhcCCCCCcc
Q 000847 788 REQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDE 829 (1255)
Q Consensus 788 RE~~~~ERe~fl~~vEklK~ckncge~~~efvlsdLql~d~e 829 (1255)
|......=.+++..+..|| .-++++..+-|.|....
T Consensus 76 r~~~~~~i~r~~eey~~Lk------~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLK------DEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHcCCCCCC
Confidence 8775544444444333333 55555533325544333
No 63
>PRK12705 hypothetical protein; Provisional
Probab=94.52 E-value=1.8 Score=52.72 Aligned_cols=58 Identities=29% Similarity=0.494 Sum_probs=30.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Q 000847 438 EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREK 502 (1255)
Q Consensus 438 E~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEk 502 (1255)
...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++
T Consensus 62 ~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 119 (508)
T PRK12705 62 LRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSAREL 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555 4445566666666665555555555555444444443
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.45 E-value=10 Score=42.23 Aligned_cols=144 Identities=24% Similarity=0.342 Sum_probs=90.1
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 000847 489 DLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQS 568 (1255)
Q Consensus 489 dl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~Lqs 568 (1255)
.|-++|-.-=++=.+|...-+.|+.+...+..-+ ......+....+.+...+. ..|..+..++..+..--.
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~------~~~~~~~~~~ye~el~~lr---~~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKK------GEEVSRIKEMYEEELRELR---RQIDDLSKEKARLELEID 78 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc------cccCcccccchhhHHHHhH---HhhhhHHHHhhHHhhhhh
Confidence 3555666666666666666666666555555442 2333334444443333332 233334444555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHH
Q 000847 569 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEE 641 (1255)
Q Consensus 569 eLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek 641 (1255)
.|+.+|+.+|.+-+...+....|..+...+-++-+..---|..|+.++..+.++-..+...+..|-.-|+..-
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 7788888888888888888888888888888888887888888888888888888887777777777776544
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.04 E-value=18 Score=43.55 Aligned_cols=215 Identities=18% Similarity=0.179 Sum_probs=113.7
Q ss_pred HHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhhHHHHH
Q 000847 360 YLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQR---AILDAKQQEFELE 436 (1255)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~---a~L~~Kk~eFElE 436 (1255)
|.+++.|++..++|+ +...-...+.+++.++.+++.+..-+.+.+ .+++-|.+++ ..++....+++..
T Consensus 18 ~~~~l~~~~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~-----kL~~~lk~~e~~i~~~~~ql~~s~~~ 88 (420)
T COG4942 18 LASLLSAAVLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQRA-----KLEKQLKSLETEIASLEAQLIETADD 88 (420)
T ss_pred HHHHHHhcccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333444555555555 111112366777777777777665544333 2333333333 2345556666666
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHH-----------HHHHHHHHHhhHHHHHHhHH
Q 000847 437 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKE-----------KENDLAARLKSVKEREKFVK 505 (1255)
Q Consensus 437 lE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkE-----------KEkdl~~K~k~LKEkEksl~ 505 (1255)
+...++-+++--.+ ...++.++ .++..-|-+.+..+.- ...|-. ++.-+.- .+.
T Consensus 89 l~~~~~~I~~~~~~-l~~l~~q~----------r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~-~~~R~ai---~~~ 153 (420)
T COG4942 89 LKKLRKQIADLNAR-LNALEVQE----------REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQ-RSVRLAI---YYG 153 (420)
T ss_pred HHHHHhhHHHHHHH-HHHHHHHH----------HHHHHHHHHHHHHHHhccCCCCchhhcChhhhh-HHHHHHH---HHH
Confidence 66666555432222 22222222 2233333333333322 111111 1111111 122
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 506 AEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLL 585 (1255)
Q Consensus 506 aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~Ll 585 (1255)
+.-..+-.....|.++...|...+..|+--++++..........+.+|..+..|+... ..+|-.+|..-+...++|-
T Consensus 154 ~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~---~~~l~~~l~~~q~~l~eL~ 230 (420)
T COG4942 154 ALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKT---LAQLNSELSADQKKLEELR 230 (420)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 2233334445555566666666666666666666666666667777777777776654 4677788888888888888
Q ss_pred HHHhHHHHHHHHHHHH
Q 000847 586 KEHEDLQQDREKFEKE 601 (1255)
Q Consensus 586 kEae~Lk~ekekFE~E 601 (1255)
+.+..|+.+..+-|.+
T Consensus 231 ~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 231 ANESRLKNEIASAEAA 246 (420)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8888888888777654
No 66
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.92 E-value=29 Score=45.56 Aligned_cols=130 Identities=31% Similarity=0.322 Sum_probs=74.4
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000847 476 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL-------IADKESLQILKVEIDQIESENAQQELQIQE 548 (1255)
Q Consensus 476 Le~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L-------~~dkEel~~lK~elEK~~a~~e~q~~qi~e 548 (1255)
|.++.+-|.+.=+++...+-.|...+|.|.-+.++|..+.... ..+.+.+..+.....+..+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443333333322221 223445555555555666666665666665
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000847 549 ECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 605 (1255)
Q Consensus 549 e~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~L 605 (1255)
....|.-..-|.+-+.-+-.+||+++-+|=-|-+.+..=++.|.+.+-..|.|-.+|
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~L 549 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHL 549 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555565555566666666678888888888888888888888888777777775555
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.53 E-value=13 Score=47.05 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=17.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 000847 437 LEEKRKSIEEEMRSKISALDQQEFEISHREEKL 469 (1255)
Q Consensus 437 lE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl 469 (1255)
+.++|+-+|.|++.-++++-.+|-.+..+|..+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555444
No 68
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.14 E-value=0.71 Score=57.42 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000847 700 LNRRDKMEKELQERTRTFEEK 720 (1255)
Q Consensus 700 ~~r~EE~E~~L~EREk~FEee 720 (1255)
.+|..-+--.+..+-..|-+-
T Consensus 619 ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 619 EKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666543
No 69
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.02 E-value=21 Score=41.13 Aligned_cols=66 Identities=30% Similarity=0.500 Sum_probs=53.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhH
Q 000847 723 RVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVK--------------VNREKLQEQQLGMRKDIDELDILCRRLYGDR 788 (1255)
Q Consensus 723 ~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~--------------~~ke~le~q~~em~kdIeeL~~ls~KLk~qR 788 (1255)
.-|++=|.+=.....||+.|.--+.+|++|..... ..+..++.+..-+.+-|+.|..|++-|+.+|
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45777888888999999999999999999987543 4667777777778888888888888887776
No 70
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.73 E-value=23 Score=40.94 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=33.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 000847 474 QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQ 526 (1255)
Q Consensus 474 qaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~ 526 (1255)
..|..++..+.++-.+|-.+.+.+.++=+++++....|..+-++|-..+.+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666665555544
No 71
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=92.44 E-value=23 Score=43.15 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhccccchhhhhhHHHhhcCCCCCccccCCCCChHHHHhh
Q 000847 795 KERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERC 843 (1255)
Q Consensus 795 Re~fl~~vEklK~ckncge~~~efvlsdLql~d~e~~~~~~~~~~~d~~ 843 (1255)
+.-|...+..|+.|.....++.- +|+-|. +.....-+++...|.++|
T Consensus 429 ~~p~~~el~~l~~~~~~d~~v~~-~l~~l~-~~a~~~Gv~s~~~L~~rf 475 (582)
T PF09731_consen 429 PRPFEDELRALKELAPDDELVDA-ALSSLP-PEAAQRGVPSEAQLRNRF 475 (582)
T ss_pred CCCHHHHHHHHHHhCCCChHHHH-HHHhcC-HHHhhCCCCCHHHHHHHH
Confidence 46788888889988777666664 466665 444444577777888887
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.35 E-value=12 Score=43.15 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=103.9
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 000847 476 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 555 (1255)
Q Consensus 476 Le~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 555 (1255)
|-+...++..|.-=++=|++-++.-...|...-.-|......|.++.+-+..+...+....+ .+..+..+|+-
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~-------~L~~e~~~L~~ 193 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD-------ALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 33445555556666666666555544444444444444444444444444444444444444 44444444444
Q ss_pred cHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000847 556 NEEE-----KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ 630 (1255)
Q Consensus 556 teeE-----r~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~ 630 (1255)
-.++ ..++..|..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=
T Consensus 194 ~~~e~~~~d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 194 LEDELEDCDPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred hHHHHHhCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444 4566655555544 344555566778888999999999999999999999999888888888888888
Q ss_pred HhHHHHhHHHHHHHHHHH
Q 000847 631 HSAEERLKKEECAMRDYV 648 (1255)
Q Consensus 631 ~~E~erLK~Ek~~~r~~~ 648 (1255)
-.|-.+||..-..++...
T Consensus 270 ~~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 270 FKEIEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999888877643
No 73
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.20 E-value=46 Score=43.06 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=76.1
Q ss_pred hHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhH---HHHHHHHHHHHhhhhhhh
Q 000847 386 ADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSI---EEEMRSKISALDQQEFEI 462 (1255)
Q Consensus 386 ~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~---eeel~~K~~~~e~rEvei 462 (1255)
+..++--|...+..|.+||-++.-+|. +.|+| ++-.+.+..-+.+-|.|||+-+--+ +.+|-.|+.++--.=.+|
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~-ekq~l-Q~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L 171 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEM-EKQKL-QDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDL 171 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 445556666788899999999998884 55665 4555667777888888888877544 345556666665555566
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Q 000847 463 SHREEKLERREQALDKKSDRVKEKENDLAARLKSVKE 499 (1255)
Q Consensus 463 ~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKE 499 (1255)
+..=..|..-+-.+..++....+..+.+..|++.++|
T Consensus 172 ~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 172 HDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555566666666666666666666666666666554
No 74
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=90.76 E-value=78 Score=42.97 Aligned_cols=229 Identities=18% Similarity=0.170 Sum_probs=116.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhh-hhh--hhHHHHHHHhHHHHHH----hhhhhHHHHHHHHHHHHHH-hh-hhhhhhh
Q 000847 123 EWTSKIEELRQSFEETQEILKREQ-SAH--LIAFSEAEKREDNLRR----ALSMEKQCVADLEKALRDM-GE-ERAQTKL 193 (1255)
Q Consensus 123 EwtSk~eel~qa~~e~e~~lKREq-aah--l~AlsEaeKREEnLkK----ALgiEKqCvadLEKAL~em-r~-E~AeiK~ 193 (1255)
..+++|.++.-+..+.+..+...+ .|. -++|..+.+--.++++ .++.+..=+.+-.--|... .. .-++.+.
T Consensus 404 ~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~k~l~~~~~~~e~s~~~~~~~~~r~~~~~~~~ 483 (1294)
T KOG0962|consen 404 GLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKKLESKGLKDKSFQYEDSTDDLKKLDERLKEAERLL 483 (1294)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhHHHHHHHHHHHHHHH
Confidence 467788888877777654443322 221 1233333333333333 4444443332222112111 11 2244445
Q ss_pred ccccchhhHHhHhhhhccc-------------hhHHHhhhhhHHHHHHHhhcc---chHHHhHHHHhhhhHHHHHHHHhh
Q 000847 194 FSEKTLTDANTLLGGIEGK-------------SLEVEEKFHAAEAKLAEVNRK---SSELEMKLQELESRESVIKRERLS 257 (1255)
Q Consensus 194 ~sesKLaeA~aLv~~~eeK-------------slEvE~Kl~aAeaklAEa~Rk---~s~~erKL~evEaRE~~LrRerlS 257 (1255)
-+..+.-.-+++-.++.++ ..+....++.-..+-|..... ...-+..++.+..|-+.+-....+
T Consensus 484 ~s~~~~~~~~~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~ 563 (1294)
T KOG0962|consen 484 ESAEKNNDELALKEKIAEKQNEMAQLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKSRLSDEKGRAIE 563 (1294)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhc
Confidence 5555555555554444433 223333333333333332222 233455667777888888888899
Q ss_pred hHhHHH-hHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhh-hhHHHHHHhhhhHHHHHhhhhhhhhhhhhh
Q 000847 258 LVTERE-AHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKAN-ENERILKQKERDLEELEKKIDLSSSKLKER 335 (1255)
Q Consensus 258 f~~Ere-a~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~n-E~~~~lk~kekeLEe~~kkie~~~~~Lk~k 335 (1255)
|--.++ ..+..+..-|..+++.++++...+-.....-.++|.=.--+. .....++.++.-|..---.++.-...|+..
T Consensus 564 ~~~~~~~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l 643 (1294)
T KOG0962|consen 564 FPLTNDRSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERL 643 (1294)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Confidence 988884 777777776666666665555444444333333333333333 455556666666665555666666666666
Q ss_pred HHHHHHH---HHHHHHHhh
Q 000847 336 EDEINSR---LAELVVKER 351 (1255)
Q Consensus 336 eddi~~r---la~L~~kEk 351 (1255)
+..|... |+.|.-.+.
T Consensus 644 ~~eie~~rk~l~~lq~~s~ 662 (1294)
T KOG0962|consen 644 KGEIEKARKDLAMLQGRSA 662 (1294)
T ss_pred HHHHHHHHhhhhhhhhHHH
Confidence 6666543 344444444
No 75
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.21 E-value=54 Score=40.22 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHH
Q 000847 504 VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEE 558 (1255)
Q Consensus 504 l~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lkitee 558 (1255)
|....++|+.-+..|.+-++++..|...++.++.+++..+..+..-+++......
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~ 337 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASS 337 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777788778888888888888888777777777766665544443
No 76
>PRK12705 hypothetical protein; Provisional
Probab=89.98 E-value=58 Score=40.26 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHhhhH
Q 000847 430 QQEFELELEEKRKSI 444 (1255)
Q Consensus 430 k~eFElElE~kRKs~ 444 (1255)
+.++|-|+...|..+
T Consensus 65 ~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 65 RNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554433
No 77
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.84 E-value=0.095 Score=64.78 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 000847 737 GEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 806 (1255)
Q Consensus 737 kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK 806 (1255)
-++-.+..+...++.....+...+..+..+...++..+..+..+..+|..|+-++.+||+.+-+++..+-
T Consensus 357 ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 357 EKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677788888888888888888899999999999999999999999999999999999988877765
No 78
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=89.64 E-value=7.8 Score=41.60 Aligned_cols=60 Identities=23% Similarity=0.510 Sum_probs=36.4
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 000847 454 ALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLEL 513 (1255)
Q Consensus 454 ~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ 513 (1255)
++..+..++..+|..|.+||+.|+.+.+.|..++..|+.+-..|..+...|...+++++.
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~ 131 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666666666665555555554444443
No 79
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.49 E-value=61 Score=39.78 Aligned_cols=369 Identities=23% Similarity=0.277 Sum_probs=174.8
Q ss_pred HhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHH
Q 000847 388 CLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREE 467 (1255)
Q Consensus 388 ~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Ee 467 (1255)
.....|..-..+|-.+.+.|...|+.-.|=| .||+.-++.+ ++|..|+...... .
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l----------------~ELe~akr~v-eel~~kLe~~~~~--------~ 85 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAAEREKAQAL----------------SELESAKRTV-EELKLKLEKAQAE--------E 85 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH-HHHHHHHHHHHHH--------H
Confidence 3445566666667777777766666554433 3444333322 3344443322111 0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000847 468 KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQ 547 (1255)
Q Consensus 468 kl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ 547 (1255)
+ .-.++.+.---++++.+.......... |-..|.....+...--..|..=+++|.+++.++......-..=..++.
T Consensus 86 ~--~a~~~~e~~k~r~~e~e~~~~~~~~~~--~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~ae 161 (522)
T PF05701_consen 86 K--QAEEDSELAKFRAKELEQGIAEEASVA--WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAE 161 (522)
T ss_pred H--HHHHhhHHhHHHHHHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112222222224455555554433322 444455555555566666777777777777777776666666666666
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH
Q 000847 548 EECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL----QQDREKFEKEWEVLDEKRDEINKEQEKIADEK 623 (1255)
Q Consensus 548 ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~L----k~ekekFE~EWE~LDEKR~el~KE~~~I~eEr 623 (1255)
...-..+++..--.+|..==..||+.|+..+.-...-.++.-.+ .+.+..|+.+-+.-.++-..|.++...+.+=.
T Consensus 162 ea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le 241 (522)
T PF05701_consen 162 EAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLE 241 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665544433333333458888888765333333332222 24455566555555555555555554443333
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH------H
Q 000847 624 KKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQE------A 697 (1255)
Q Consensus 624 e~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE------~ 697 (1255)
-+|.... .+-..|+.|...... ..++... +.-.-...++..-..+..+++--+.+|+ +
T Consensus 242 ~kL~~a~-~~l~~Lq~El~~~~~---~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~ 305 (522)
T PF05701_consen 242 SKLAEAS-AELESLQAELEAAKE---SKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEAS 305 (522)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH---HHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 333444433222222 2222211 0111111122222222222222222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHH
Q 000847 698 ELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDEL 777 (1255)
Q Consensus 698 ~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL 777 (1255)
.|..-.+-+...| ++.+. ++..+..--..+...+..+..++.++..+-.-+...-.+......+|...+..|
T Consensus 306 ~L~~~vesL~~EL-e~~K~-------el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql 377 (522)
T PF05701_consen 306 SLRASVESLRSEL-EKEKE-------ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQL 377 (522)
T ss_pred HHHHHHHHHHHHH-HHHHH-------HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 1222222222222 11111 111111111233334444444544444444444444455556677777777777
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHhhcccc
Q 000847 778 DILCRRLYGDREQFKREKERFLEFVEKHTSCK 809 (1255)
Q Consensus 778 ~~ls~KLk~qRE~~~~ERe~fl~~vEklK~ck 809 (1255)
..-.+..+.-.+....+-......+++.+.+=
T Consensus 378 ~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i 409 (522)
T PF05701_consen 378 SSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAI 409 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777543
No 80
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.25 E-value=51 Score=38.58 Aligned_cols=123 Identities=18% Similarity=0.246 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 000847 570 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 649 (1255)
Q Consensus 570 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k 649 (1255)
||-|++.+|..-.-|..|...|++.=-++-.-=|. +=|-+...+..=-+.|+++|..+--.|.
T Consensus 39 Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq-----------------EEE~isN~LlKkl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 39 LKRELETEKARCKHLQEENRALREASVRIQAKAEQ-----------------EEEFISNTLLKKLQQLKKEKETLALKYE 101 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665443322111111 1111222222223445555555544444
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 000847 650 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 709 (1255)
Q Consensus 650 relE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~ 709 (1255)
++-|.|.-.=-.=.+.+.+|+..+-..+..|..-++.-+.-+=..|+.++...+.++++-
T Consensus 102 ~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~L 161 (310)
T PF09755_consen 102 QEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444433322222233344444444444444444444444444444454444444444433
No 81
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.92 E-value=52 Score=38.25 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000847 696 EAELLNRRDKMEKELQERTRTFE 718 (1255)
Q Consensus 696 E~~~~~r~EE~E~~L~EREk~FE 718 (1255)
|..+-.+..++++.|..+.++.+
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e 155 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALE 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666665544
No 82
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.48 E-value=78 Score=39.71 Aligned_cols=12 Identities=17% Similarity=0.653 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHH
Q 000847 443 SIEEEMRSKISA 454 (1255)
Q Consensus 443 s~eeel~~K~~~ 454 (1255)
.+++|++.+..+
T Consensus 217 ~~~~Elk~~l~~ 228 (581)
T KOG0995|consen 217 ELEDELKHRLEK 228 (581)
T ss_pred hHHHHHHHHHHH
Confidence 344555555443
No 83
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.47 E-value=79 Score=39.79 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=43.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 000847 516 QKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQ 569 (1255)
Q Consensus 516 ~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~Lqse 569 (1255)
..++.=...|.+-|.||.||+..+-.-.++|..-..+|.-|-....|++-=.++
T Consensus 491 ~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK 544 (594)
T PF05667_consen 491 RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK 544 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 344555567788889999999999999999999999999888888888765555
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.95 E-value=57 Score=37.55 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHH
Q 000847 520 ADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKS 561 (1255)
Q Consensus 520 ~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~ 561 (1255)
-|+++|..++.+|......++..+..+.+-+..|......-.
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777766666666666666665555444443333333
No 85
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=87.07 E-value=31 Score=42.40 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000847 500 REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEEC 550 (1255)
Q Consensus 500 kEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~ 550 (1255)
+|..-....+..+..+.++....+.+...+.+.++-...+..+...+.+++
T Consensus 204 KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kq 254 (489)
T PF05262_consen 204 KEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQ 254 (489)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333333333444444444444444444444444444444433333333
No 86
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.95 E-value=1.3e+02 Score=40.71 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHhhhhhcHHHHHHHHHHhhHhHHHHHHH
Q 000847 765 EQQLGMRKDIDELDILCRRLYGDREQFKRE 794 (1255)
Q Consensus 765 ~q~~em~kdIeeL~~ls~KLk~qRE~~~~E 794 (1255)
.--.|+|| +-+|..++.+|.+.|.....+
T Consensus 1015 kkE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1015 KKEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 33457788 889999999988887665544
No 87
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.86 E-value=61 Score=36.70 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=53.3
Q ss_pred HHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 000847 586 KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEAT 665 (1255)
Q Consensus 586 kEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~ 665 (1255)
-|.+-++.+....+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....+
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~~ 171 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 3334444444444444455555556666666666655556666665666666666655543 455677788888888
Q ss_pred HHHHHHHHHHHHH
Q 000847 666 MRHEQLVLSEKAK 678 (1255)
Q Consensus 666 M~hE~s~~~eK~q 678 (1255)
|..+=...++++-
T Consensus 172 l~~ell~~yeri~ 184 (239)
T COG1579 172 LDPELLSEYERIR 184 (239)
T ss_pred cCHHHHHHHHHHH
Confidence 8876666666554
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.25 E-value=65 Score=36.46 Aligned_cols=72 Identities=25% Similarity=0.402 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000847 414 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDL 490 (1255)
Q Consensus 414 eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl 490 (1255)
.|| -||-+..-|..+..++.-.|... ..++.....+++-.+.++...+.++..-+..+..-.++++.-+..+
T Consensus 11 ~iq-~lD~e~~rl~~~~~~~~~~l~k~----~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 11 AIQ-KLDLEKDRLEPRIKEIRKALKKA----KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHH-HHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 33444444444444444444322 2445555566666677777777777766666655555554444444
No 89
>PRK09039 hypothetical protein; Validated
Probab=85.83 E-value=22 Score=41.37 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHH
Q 000847 163 LRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQ 242 (1255)
Q Consensus 163 LkKALgiEKqCvadLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~ 242 (1255)
|=-.|+++..+-++|+-.|.+|+..+. .+...-+.+.....+...-..+++..+....+.|++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777899999999999999999999887 2222333333333322222346666666666777777666777777777
Q ss_pred HhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhH
Q 000847 243 ELESRESVIKRERLSLVTEREAHEAAFYKQREDL 276 (1255)
Q Consensus 243 evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L 276 (1255)
-+.+.=..||+++-++.++..+.|.....++..+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766666666554333333
No 90
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=85.74 E-value=26 Score=34.35 Aligned_cols=92 Identities=25% Similarity=0.371 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 000847 444 IEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKE 523 (1255)
Q Consensus 444 ~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkE 523 (1255)
++..|..|+.+...++..+..++..|.++++.|....-.+..-=++-+. ...-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~----------k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA----------KRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777888888888888888888888887766666544333333 333333444444444444445
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 000847 524 SLQILKVEIDQIESENAQQELQ 545 (1255)
Q Consensus 524 el~~lK~elEK~~a~~e~q~~q 545 (1255)
+|..|..+|..+.+.+..-...
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555444333
No 91
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.34 E-value=30 Score=38.65 Aligned_cols=159 Identities=25% Similarity=0.327 Sum_probs=97.0
Q ss_pred cchhhHHhHhhhhccc--hhHHHhhhhhHHHHHHHhh---c-----cchHHHhHHHHhhhhHHHHHHHHhhhHh------
Q 000847 197 KTLTDANTLLGGIEGK--SLEVEEKFHAAEAKLAEVN---R-----KSSELEMKLQELESRESVIKRERLSLVT------ 260 (1255)
Q Consensus 197 sKLaeA~aLv~~~eeK--slEvE~Kl~aAeaklAEa~---R-----k~s~~erKL~evEaRE~~LrRerlSf~~------ 260 (1255)
+|++.|.++= +=++| ..+++.++--|+..+..+- | .++-..-||++-.+=-..|+++.-+..+
T Consensus 21 ~k~~~~~~~~-~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~ 99 (220)
T KOG1666|consen 21 KKIGRALSLP-GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAG 99 (220)
T ss_pred HhHHHHhcCC-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4455554444 22333 4444555555544444321 1 1444555555555544455554433331
Q ss_pred H----HHhHHHH----HHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhh
Q 000847 261 E----REAHEAA----FYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKL 332 (1255)
Q Consensus 261 E----rea~E~~----~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~L 332 (1255)
. .++..+. ..-||.-|-.=-..|...-+||.+++|+.+.= +.+=-+.=.+|-.-...|+.++..|
T Consensus 100 ~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ET-------EqIG~~IL~dL~~QRe~L~rar~rL 172 (220)
T KOG1666|consen 100 DRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALET-------EQIGSEILEDLHGQREQLERARERL 172 (220)
T ss_pred hHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233333 67899999998999999999999999986654 4455555677777788899999999
Q ss_pred hhhHHHHH---HHHHHHH---HHhhhhhhhHHHHHHHHh
Q 000847 333 KEREDEIN---SRLAELV---VKERVGFLAYLIYLLYFI 365 (1255)
Q Consensus 333 k~keddi~---~rla~L~---~kEk~~~~~~~~~~~~~~ 365 (1255)
.+-.+++. .-|.+++ .++| |+.|.|.++||+
T Consensus 173 ~~td~~lgkS~kiL~tM~RR~~~nk--~~~~aii~~l~~ 209 (220)
T KOG1666|consen 173 RETDANLGKSRKILTTMTRRLIRNK--FTLTAIIALLVL 209 (220)
T ss_pred HhchhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 99888876 3456666 7888 555555444443
No 92
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=84.79 E-value=1.5e+02 Score=39.39 Aligned_cols=49 Identities=8% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHHHHHHHH-----------HHhhhhhhhhhccccchhhHHh
Q 000847 154 SEAEKREDNLRRALSMEKQCVADLEKALR-----------DMGEERAQTKLFSEKTLTDANT 204 (1255)
Q Consensus 154 sEaeKREEnLkKALgiEKqCvadLEKAL~-----------emr~E~AeiK~~sesKLaeA~a 204 (1255)
+....|.+-|.+.+|++.-. .+...++ .++..+..+-..++..++....
T Consensus 164 a~~~eR~~il~~l~g~~~y~--~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~ 223 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYG--QISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTA 223 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHH
Confidence 35577889999999999854 3444444 4444544444444444443333
No 93
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.07 E-value=1.8e+02 Score=39.01 Aligned_cols=137 Identities=20% Similarity=0.289 Sum_probs=89.1
Q ss_pred chhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHH
Q 000847 198 TLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLR 277 (1255)
Q Consensus 198 KLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~ 277 (1255)
|++.++.=+.....|.-++..||-.-+|+++++......-+..+.+.-+.-+.++|+-+-+..+.--.+..|.+-+....
T Consensus 296 k~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d 375 (1074)
T KOG0250|consen 296 KVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVD 375 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555666666666667777777777777788888888888999888888888888888888777777
Q ss_pred HHHHhhchhhhhh-HHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhh
Q 000847 278 EWEKKLQIGDERL-SELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKE 334 (1255)
Q Consensus 278 eweKkLqe~eerL-~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~ 334 (1255)
..+|.+-..++++ -.++..+-+++.+++-..+.+...+-.+..+..+++.-+..++.
T Consensus 376 ~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 376 RLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776 55555566666665444444433333444444444444443333
No 94
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.84 E-value=1.6e+02 Score=38.12 Aligned_cols=292 Identities=23% Similarity=0.332 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHH----HHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HHH
Q 000847 412 RVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKIS----ALDQQEFEISHREEKLERREQALDKKSDRV-KEK 486 (1255)
Q Consensus 412 ~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~----~~e~rEvei~h~Eekl~krEqaLe~k~~~l-kEK 486 (1255)
.---|.|-..+.-.++.--+-||.|+-++.+-+|-||++=.+ .+|.-|.+-.|+ |---..++ -|.
T Consensus 807 ~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~r----------lR~eakRir~EQ 876 (1187)
T KOG0579|consen 807 ARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHR----------LRNEAKRIRIEQ 876 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhh
Confidence 334455666666666767788999999999999999876433 222222222222 21111111 133
Q ss_pred HHHHHH---HHhhHHHHHH-------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--------HHHHH
Q 000847 487 ENDLAA---RLKSVKEREK-------------FVKAEEKKLELEKQKLIADKESLQILKVEIDQIES--------ENAQQ 542 (1255)
Q Consensus 487 Ekdl~~---K~k~LKEkEk-------------sl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a--------~~e~q 542 (1255)
|+|+.. +||.-|...+ +|+.--.+++-+++ +++|+=+.+.+.+++-++. ++..-
T Consensus 877 ekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~q--l~ekdFv~kqqq~le~~lkrm~~~~k~ema~i 954 (1187)
T KOG0579|consen 877 EKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQ--LKEKDFVMKQQQNLEAMLKRMAEKHKEEMASI 954 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344322 2222222222 34433344444444 3455555555555554433 33222
Q ss_pred HHHHHHHHhh-hhccHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhHHhHHH
Q 000847 543 ELQIQEECQK-LKINEEEKS---------ELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE-WEVLDEKRDE 611 (1255)
Q Consensus 543 ~~qi~ee~e~-LkiteeEr~---------E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~E-WE~LDEKR~e 611 (1255)
.++..-.+++ |.+-+.--= -|.-+.-+|| |.|=+|.-.|++-.+.=..|-+++--+ -|.| ||..
T Consensus 955 ErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlK---DqYflqRhqlL~rHekE~eQmqrynQr~ie~L--k~rq 1029 (1187)
T KOG0579|consen 955 ERECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLK---DQYFLQRHQLLARHEKEMEQMQRYNQREIEDL--KRRQ 1029 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 2222222222 222222111 1222233444 455555556777776666666666432 2222 2222
Q ss_pred HHH----------HH----------HHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 000847 612 INK----------EQ----------EKI------ADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEAT 665 (1255)
Q Consensus 612 l~K----------E~----------~~I------~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~ 665 (1255)
-+. |+ -+| ++.|+++..|-.-|+.|-|.+..+-.-.+.+.+-.|....++=+-.
T Consensus 1030 tqerarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni~E 1109 (1187)
T KOG0579|consen 1030 TQERARLPKIQRSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENIIE 1109 (1187)
T ss_pred HHHHhhcchhhhhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11 122 5789999999999999999999988888888888888777765544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000847 666 MRHEQLVLSEKAKNDRRKMLEEFEMQRM-NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDI 728 (1255)
Q Consensus 666 M~hE~s~~~eK~q~Erad~l~d~Emqkr-eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~I 728 (1255)
. -.+|+|+-.+|-.-|-|+. +|+..-..-++.---.|.-|...+|++-+-++..|
T Consensus 1110 L--------~qlQNEKchlLvEhEtqklKelde~h~~~~~~w~e~l~~rk~~lee~~~~~~req 1165 (1187)
T KOG0579|consen 1110 L--------DQLQNEKCHLLVEHETQKLKELDEKHHEMRELWQENLIARKTVLEEKFEDELREQ 1165 (1187)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3 3689999999999998874 56666666677777788888888888877766554
No 95
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.54 E-value=54 Score=36.71 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000847 523 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 601 (1255)
Q Consensus 523 Eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~E 601 (1255)
+.|..+..+..+....+......|..--+++++.++++..|-..+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888889999999999999999999999999888888888888777777666655555555544444433
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.03 E-value=66 Score=33.43 Aligned_cols=66 Identities=27% Similarity=0.366 Sum_probs=50.8
Q ss_pred HhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHH
Q 000847 229 EVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELR 294 (1255)
Q Consensus 229 Ea~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~q 294 (1255)
.+.-+..+++-++++++.|-..+..++-||..=...+|.++..-.+.|.+-..+|.++..+.....
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 344455667777888888888888888888888888888888888888888888888877766543
No 97
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.59 E-value=1.6e+02 Score=36.08 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 000847 424 AILDAKQQEFELELEEKRKSIEEEMRSKISALDQQ 458 (1255)
Q Consensus 424 a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~r 458 (1255)
..|.-+|-.||.=++|.|.=|.+.+-+|++-++-.
T Consensus 139 ~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~ 173 (552)
T KOG2129|consen 139 KQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENK 173 (552)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45666788889888888877777777777666543
No 98
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.04 E-value=64 Score=39.49 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 000847 572 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 651 (1255)
Q Consensus 572 eEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 651 (1255)
.+++..|++-+++..|++.|+++-..-+++=..+.-|-.+++-.+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999999888888888888888888888888777665554 44555666666666666666
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000847 652 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRR 703 (1255)
Q Consensus 652 lE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~ 703 (1255)
.+.++.+.-+-- -++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d-------------------~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKD-------------------EKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHhHheehhhhh
Confidence 555544433322 234477777776655554443
No 99
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.14 E-value=2e+02 Score=36.29 Aligned_cols=122 Identities=15% Similarity=0.198 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhh
Q 000847 692 RMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 771 (1255)
Q Consensus 692 kreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~ 771 (1255)
+.+|-..|+--+.+-|...+-=.+.||.-=.+.+.+|+..-+.+.-......-|+.++-..--.+...---|+..-+-+.
T Consensus 244 ~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~ 323 (546)
T KOG0977|consen 244 KNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALE 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHH
Confidence 34455555555566666666666666666666777777555554444444444444443332233333333444455566
Q ss_pred hcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccchhhhhhHH
Q 000847 772 KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAF 818 (1255)
Q Consensus 772 kdIeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK~ckncge~~~ef 818 (1255)
+-|+.|..|=..-+..=++...+++.=+. +++ .-|-.++.++
T Consensus 324 ~~I~dL~~ql~e~~r~~e~~L~~kd~~i~---~mR--eec~~l~~El 365 (546)
T KOG0977|consen 324 KRIEDLEYQLDEDQRSFEQALNDKDAEIA---KMR--EECQQLSVEL 365 (546)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhHHHHHH---HHH--HHHHHHHHHH
Confidence 66777776655555555555556654443 333 3566555553
No 100
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.59 E-value=88 Score=31.97 Aligned_cols=93 Identities=28% Similarity=0.424 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHh
Q 000847 441 RKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIA 520 (1255)
Q Consensus 441 RKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~ 520 (1255)
|..+...+.....+.+.....+...++++.. +..++..+..++..+ .+++......+..
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~------------------~ere~~~~~~~~~~l---~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEE------------------LERELASAEEKERQL---QKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4455555555555555544444444444433 333334444444433 3444566677788
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 000847 521 DKESLQILKVEIDQIESENAQQELQIQEECQKLK 554 (1255)
Q Consensus 521 dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 554 (1255)
.+++++.++.-++..++....+.++...+.++|+
T Consensus 113 ~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 113 EKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988887775
No 101
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.55 E-value=45 Score=38.51 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000847 559 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQ 592 (1255)
Q Consensus 559 Er~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk 592 (1255)
+.+.+..-..++.++.+.+-.|........+.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556667777777777777777777775
No 102
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.56 E-value=2.4e+02 Score=36.46 Aligned_cols=305 Identities=23% Similarity=0.190 Sum_probs=150.9
Q ss_pred hHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHH
Q 000847 260 TEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEI 339 (1255)
Q Consensus 260 ~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi 339 (1255)
+...-.++.|..|+..|.+--++++..+.+|...-...-|+.+-+ .-+ ...-+|+...+++..-..-|.+.+...
T Consensus 186 s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~----~ql-~~~~ele~i~~~~~dqlqel~~l~~a~ 260 (716)
T KOG4593|consen 186 SELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELE----QQL-SLSEELEAINKNMKDQLQELEELERAL 260 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHH-HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566888999999999888888888888877666665555432 111 233467888888877777776665555
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhh-h----------hHHhhhhHHhhHHhHHHHHHHHh
Q 000847 340 NSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQ-E----------ADCLRSTVEMKEKRLLTIEEKLN 408 (1255)
Q Consensus 340 ~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e----------~~~~~~~Le~KEkeLl~leEKL~ 408 (1255)
+.....+. |-+.+....+|.. | +..+++.+.--|-+--.+..+|.
T Consensus 261 ~q~~ee~~------------------------~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 261 SQLREELA------------------------TLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred HHHHHHHH------------------------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54433332 1112222222222 2 44444455555555556677888
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHH--------HHHHhhhh-----hhhhhhHHHHHHHHHH
Q 000847 409 ARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSK--------ISALDQQE-----FEISHREEKLERREQA 475 (1255)
Q Consensus 409 aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K--------~~~~e~rE-----vei~h~Eekl~krEqa 475 (1255)
.+|+..-. +=--|.--+-. ++.....+.=+++.+-...+ +...-++| ..|...+.++-.-.-
T Consensus 317 rwE~~~~~-~~~~~~~~~~~---~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~e- 391 (716)
T KOG4593|consen 317 RWERADQE-MGSLRTPEDLM---EKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHE- 391 (716)
T ss_pred HHHHHhhh-hhccCCHHHHH---HHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-
Confidence 88874322 00000001111 11122222222221111100 00111111 112233333322222
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHh
Q 000847 476 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQ----ELQIQEECQ 551 (1255)
Q Consensus 476 Le~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q----~~qi~ee~e 551 (1255)
.++++-.+-.-+....-.|...=...+-.+|.|..+..+.-++++.+.-|=..+.+...+.+.. -.+|..-.
T Consensus 392 ---tl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k- 467 (716)
T KOG4593|consen 392 ---TLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQK- 467 (716)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHH-
Confidence 2222222222223333333333344455667777788888888888877766666666555554 22222222
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 000847 552 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADE 622 (1255)
Q Consensus 552 ~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eE 622 (1255)
+.++.=+.++--|++.|-+.+..++.|. .+-+.+++|-+.+-++++.+-++
T Consensus 468 --~~~e~le~~~kdL~s~L~~~~q~l~~qr------------------~e~~~~~e~i~~~~ke~~~Le~E 518 (716)
T KOG4593|consen 468 --KRLEKLEHELKDLQSQLSSREQSLLFQR------------------EESELLREKIEQYLKELELLEEE 518 (716)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhhhhHHHHHHHHHHHHHHH
Confidence 2222223445555555555555555443 44566777777777776665543
No 103
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.47 E-value=90 Score=34.69 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHhhhh
Q 000847 649 QREIEAIRLDKEAFEATMRHEQLVLSE---KAKNDRRKMLE-EFEMQRMN 694 (1255)
Q Consensus 649 krelE~L~~ekEsF~~~M~hE~s~~~e---K~q~Erad~l~-d~Emqkre 694 (1255)
+.+|-..+..++.|+...++||..|.+ |+-.=..++.. =++|-+||
T Consensus 144 ~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn 193 (202)
T PF06818_consen 144 RAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRN 193 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888999999999999974 33333344433 34555543
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.44 E-value=1.1e+02 Score=32.33 Aligned_cols=87 Identities=26% Similarity=0.390 Sum_probs=62.1
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 000847 550 CQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL 629 (1255)
Q Consensus 550 ~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~ 629 (1255)
.++|+-++.+.+=+-.-=--|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.+-
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332222223456677788888889999999999999999999999999999999999999777777766
Q ss_pred HHhHHHH
Q 000847 630 QHSAEER 636 (1255)
Q Consensus 630 ~~~E~er 636 (1255)
+.....+
T Consensus 89 lq~~q~k 95 (140)
T PF10473_consen 89 LQKKQEK 95 (140)
T ss_pred HHHHHHH
Confidence 6444333
No 105
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.03 E-value=40 Score=38.92 Aligned_cols=11 Identities=0% Similarity=-0.079 Sum_probs=4.6
Q ss_pred HHhhhhhcHHH
Q 000847 766 QQLGMRKDIDE 776 (1255)
Q Consensus 766 q~~em~kdIee 776 (1255)
.|.||+.=...
T Consensus 167 ~W~EINAA~Gq 177 (314)
T PF04111_consen 167 EWNEINAAWGQ 177 (314)
T ss_dssp -HHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 45555444433
No 106
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.52 E-value=2.5e+02 Score=35.62 Aligned_cols=119 Identities=26% Similarity=0.354 Sum_probs=68.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 000847 472 REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQ 551 (1255)
Q Consensus 472 rEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e 551 (1255)
+++-|.++.++|..=.+-+.+=.+.++- ...+.++.|+.-+..+..--++++.++.+...++..++.|
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~---k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--------- 327 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKS---KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ--------- 327 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 3344444444444333333333333332 2334455555555555555555555555555555555554
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 000847 552 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEV 604 (1255)
Q Consensus 552 ~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~ 604 (1255)
.|+-++=.....=--+|+++++++-.+.+.|++++=+++-+-+.|=++-+.
T Consensus 328 --~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 328 --GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEK 378 (581)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444444444455788999999999999999999998888887665443
No 107
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=73.09 E-value=2.2e+02 Score=34.32 Aligned_cols=49 Identities=27% Similarity=0.309 Sum_probs=20.4
Q ss_pred HHHHhhhH-HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 000847 475 ALDKKSDR-VKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKE 523 (1255)
Q Consensus 475 aLe~k~~~-lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkE 523 (1255)
|++++.++ +++.|.|-.++...-++-+--.--.||+-+.-.+||.=+++
T Consensus 111 AaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~ 160 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIE 160 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 24455555555544444433333333333333333433333
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.48 E-value=2.5e+02 Score=34.39 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=32.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 000847 554 KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQ 616 (1255)
Q Consensus 554 kiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~ 616 (1255)
.++.++=..-.||..-+-.=.-..+.+...|.+..-.|...+...+.|=..|+....+...+.
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~ 198 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ 198 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444343344333332222333445556666666677777776666665555554444333
No 109
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=71.10 E-value=76 Score=35.73 Aligned_cols=135 Identities=17% Similarity=0.219 Sum_probs=78.1
Q ss_pred HHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhh------------HHHHHHhhchhhhhhHHHHHhhhhHhhh
Q 000847 236 ELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQRED------------LREWEKKLQIGDERLSELRRTLNQREVK 303 (1255)
Q Consensus 236 ~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~------------L~eweKkLqe~eerL~~~qr~LNqREe~ 303 (1255)
....++....+..+.|+.+......+.........++..- -+.....+...+.+|...+..++.+...
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 211 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAA 211 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5566677777777777777777777777777777777655 4556666666666666666665555555
Q ss_pred hhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHH---HHHHHHHhhhhhhhHHHHHHHHhhccCCCcc
Q 000847 304 ANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSR---LAELVVKERVGFLAYLIYLLYFICAYSLPSF 373 (1255)
Q Consensus 304 ~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~r---la~L~~kEk~~~~~~~~~~~~~~~~~~~~~~ 373 (1255)
++.... .....|...+.+.-.....-..-.+.+-.| |..|+..--..++.|..+.++|+|.+.+|-+
T Consensus 212 l~~~~~---~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L~~~~~~~~~~~~~i~llfi~iel~Pv~ 281 (301)
T PF14362_consen 212 LDAQIA---ARKARLDEARQAKVAEFQAIISANDGFLARLEALWELTKEDPSALLASLFIFLLFIAIELLPVL 281 (301)
T ss_pred HHhhHH---HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 432211 111222222222111111111112223333 3566666666788899999999999988854
No 110
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=70.77 E-value=2.6e+02 Score=34.34 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhHhHHHHH
Q 000847 748 QLEKEKHEVKVNREKLQEQ 766 (1255)
Q Consensus 748 rLekEr~Ei~~~ke~le~q 766 (1255)
.|-.||.-+.+.-++++.+
T Consensus 410 ~l~~ek~al~lqlErl~~~ 428 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLETQ 428 (511)
T ss_pred HHHhhhhhccccHHHHHHH
Confidence 5666777666666666544
No 111
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=70.69 E-value=1.4e+02 Score=31.89 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=51.0
Q ss_pred HhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHH---------hHHHHHHHhHhhHHHHHHhhch
Q 000847 217 EEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTERE---------AHEAAFYKQREDLREWEKKLQI 285 (1255)
Q Consensus 217 E~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Ere---------a~E~~~~~qRe~L~eweKkLqe 285 (1255)
..|+..|...+.++.++...+.+++.++-. .++.+.-.|..++- =.+..|..+++.+..|+.-|.|
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISE---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 556667777777777777888888888754 47888888887765 3477889999999999987754
No 112
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.23 E-value=52 Score=37.24 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=68.0
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000847 560 KSELLRLQ-----SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 634 (1255)
Q Consensus 560 r~E~l~Lq-----seLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~ 634 (1255)
|.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|.+.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 44456677 899999999999999999999999999999999999999999999999988887765543 456
Q ss_pred HHhHHHHHHHHH
Q 000847 635 ERLKKEECAMRD 646 (1255)
Q Consensus 635 erLK~Ek~~~r~ 646 (1255)
.+|++.-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667766655544
No 113
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=70.07 E-value=1.9e+02 Score=32.95 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHH
Q 000847 170 EKQCVADLEKALRD 183 (1255)
Q Consensus 170 EKqCvadLEKAL~e 183 (1255)
+-+|.+-+++|+.-
T Consensus 38 e~e~~~A~~~A~~~ 51 (297)
T PF02841_consen 38 EAENRAAVEKAVEH 51 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555555533
No 114
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.35 E-value=1.8e+02 Score=31.84 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=17.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Q 000847 457 QQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREK 502 (1255)
Q Consensus 457 ~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEk 502 (1255)
+...++.+.+..+..-.+.++.....+..+.+.+...-..|..+..
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444433333333333333333333333333333333
No 115
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=69.02 E-value=71 Score=40.29 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=24.8
Q ss_pred cccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchH
Q 000847 195 SEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSE 236 (1255)
Q Consensus 195 sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~ 236 (1255)
.+.|...+..-..-+.+...++..+|.+|+++++.--+++..
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444555555556666666677777777666666555443
No 116
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=67.62 E-value=1.8e+02 Score=34.19 Aligned_cols=121 Identities=16% Similarity=0.347 Sum_probs=97.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 000847 528 LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 607 (1255)
Q Consensus 528 lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDE 607 (1255)
|-..|+.-...+.+---|++.+.-+|.--..++.|++| ....+=|+.+++|..+|+...+ .+++++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455555666677778899999999999999999995 5677899999999999997765 578889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcH
Q 000847 608 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK 659 (1255)
Q Consensus 608 KR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 659 (1255)
+--.|..=+.+|..==--++|+++.-.| +|-..|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777777776655 577888888888888877643
No 117
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=67.37 E-value=65 Score=42.87 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=11.0
Q ss_pred hhhhhhHHHHHHHHhhccCCC
Q 000847 351 RVGFLAYLIYLLYFICAYSLP 371 (1255)
Q Consensus 351 k~~~~~~~~~~~~~~~~~~~~ 371 (1255)
++-+||..+.||.+++ -..|
T Consensus 223 KSDVWSLG~ILYELLT-Gk~P 242 (1021)
T PTZ00266 223 KSDMWALGCIIYELCS-GKTP 242 (1021)
T ss_pred hhHHHHHHHHHHHHHH-CCCC
Confidence 4456676666655554 3444
No 118
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.31 E-value=1.8 Score=53.98 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH
Q 000847 462 ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ 541 (1255)
Q Consensus 462 i~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~ 541 (1255)
+.|.=+++.+.|..+++=-.+|.+. .+|..+++.|++.=..+.-.--.||.+....-+-+..|..|+..|..+...+.+
T Consensus 303 lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 303 LREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665555555553 355556666665544433333334444444444444455555555444444444
Q ss_pred HHHH
Q 000847 542 QELQ 545 (1255)
Q Consensus 542 q~~q 545 (1255)
...+
T Consensus 382 ~~~~ 385 (713)
T PF05622_consen 382 ESRR 385 (713)
T ss_dssp ----
T ss_pred HHHH
Confidence 4333
No 119
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.63 E-value=55 Score=36.03 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=51.4
Q ss_pred hhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 000847 288 ERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICA 367 (1255)
Q Consensus 288 erL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~ 367 (1255)
++..+.|..+++++..+++-.....+..++|+.++.+++.....+....+++..+. -+|.-.+.++-+||+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~w---------f~~Gg~v~~~GlllG 188 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQW---------FMYGGGVAGIGLLLG 188 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHchHHHHHHHHHH
Confidence 56666777777777777777777777788888888888877777766555543321 122233444556677
Q ss_pred cCCCccc
Q 000847 368 YSLPSFS 374 (1255)
Q Consensus 368 ~~~~~~~ 374 (1255)
..|||+.
T Consensus 189 lilp~l~ 195 (206)
T PRK10884 189 LLLPHLI 195 (206)
T ss_pred HHhcccc
Confidence 7788754
No 120
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.60 E-value=1.3e+02 Score=33.70 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---HHH
Q 000847 558 EEKSELLRLQSQLKQQIETYRHQQE---LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---LQH 631 (1255)
Q Consensus 558 eEr~E~l~LqseLKeEIe~~R~Qke---~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek---~~~ 631 (1255)
.=..+|-.+-..|.++++.++.... ++.+|.+.|.+||..+..|--.|..=.-.|+...+....+|.+... .++
T Consensus 8 ~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 8 NKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666655443 3345666666666666666655555555555555554444443322 223
Q ss_pred hHHHHhHHHHHHHHHH
Q 000847 632 SAEERLKKEECAMRDY 647 (1255)
Q Consensus 632 ~E~erLK~Ek~~~r~~ 647 (1255)
.|...||.+-+.||..
T Consensus 88 eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 88 EEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555544
No 121
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.92 E-value=3.4e+02 Score=33.78 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=33.5
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 000847 596 EKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 638 (1255)
Q Consensus 596 ekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK 638 (1255)
..-+.+++...+.-..|..+..+|......++..+.. ..|.+
T Consensus 472 ~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~nRfr 513 (569)
T PRK04778 472 EAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-ANRYR 513 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccC
Confidence 3455688888888889999999999999999988866 44444
No 122
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.90 E-value=3.6e+02 Score=34.00 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=23.7
Q ss_pred HHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHH
Q 000847 387 DCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIE 445 (1255)
Q Consensus 387 ~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~e 445 (1255)
..++..++.-+..|..++.++..- . .-+.+.+..|..++...+.++...++.+.
T Consensus 233 ~~l~~ele~a~~~l~~l~~~~~~~-G----G~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 233 AHLRNELEEAQRSLESLEKKFRSE-G----GDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444331 1 12223344455555555555555554444
No 123
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=64.73 E-value=2.6e+02 Score=31.92 Aligned_cols=111 Identities=15% Similarity=0.304 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 000847 572 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIAD-EKKKLEKLQHSAEERLKKEECAMRDYVQR 650 (1255)
Q Consensus 572 eEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~e-Ere~lek~~~~E~erLK~Ek~~~r~~~kr 650 (1255)
+||+++-.|..+|.+....+.+....||++=+.|--+-++-++.-.+.+. .+..|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999988888877777777666653 3556677777777777555 55666666
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 651 EIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 688 (1255)
Q Consensus 651 elE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~ 688 (1255)
++-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655555 4555666665555555565555555554
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=64.63 E-value=1.7e+02 Score=29.77 Aligned_cols=96 Identities=20% Similarity=0.309 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000847 523 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 602 (1255)
Q Consensus 523 Eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EW 602 (1255)
..+..+...+..++..+..+-.....++++.+--=---.+...-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555666666666666666666666633111111111222246777777788888888888888877777777777
Q ss_pred hhhHHhHHHHHHHHHHHHH
Q 000847 603 EVLDEKRDEINKEQEKIAD 621 (1255)
Q Consensus 603 E~LDEKR~el~KE~~~I~e 621 (1255)
+ +-+..|.++...+..
T Consensus 97 ~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQ 112 (132)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 6 345555555554443
No 125
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.61 E-value=87 Score=39.65 Aligned_cols=61 Identities=31% Similarity=0.400 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 000847 556 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA 620 (1255)
Q Consensus 556 teeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~ 620 (1255)
.+.|-++|.+.=.+||.+|++++.+...+..+++ .+.+-.+|-+.+|+.-..|++++..=.
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777888899999999888888877 555667788888888888888776544
No 126
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.85 E-value=2.4e+02 Score=31.23 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHH
Q 000847 662 FEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKR--ERVLNDIAHLKEVAEGEI 739 (1255)
Q Consensus 662 F~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek--~~EL~~In~lke~a~kE~ 739 (1255)
|+.+=.+++..-..++...-.+-...++-.|.+|......+..+++..|-++++.+-.-+ -..|..|..+|+-..+||
T Consensus 8 yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI 87 (206)
T PF14988_consen 8 YLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREI 87 (206)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444555555555555555555666666666666666666666666666666654322 235666777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 000847 740 QEIKSERDQLEKEKHE 755 (1255)
Q Consensus 740 Eev~~E~~rLekEr~E 755 (1255)
..+.-++.++..+-.+
T Consensus 88 ~~Le~e~~~~~~e~~~ 103 (206)
T PF14988_consen 88 QTLEEELEKMRAEHAE 103 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776666544
No 127
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.40 E-value=3.1e+02 Score=32.49 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=96.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 000847 516 QKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELL--------------RLQSQLKQQIETYRHQQ 581 (1255)
Q Consensus 516 ~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l--------------~LqseLKeEIe~~R~Qk 581 (1255)
.+|++-.+-|..|-.+|++.+.+-.+=+..+.+=++.....+.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 3556666666666666666655555444444443322222222111111 11233444444555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhh
Q 000847 582 ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA-----DEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIR 656 (1255)
Q Consensus 582 e~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~-----eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~ 656 (1255)
.-|..|.+.|++...--..+--+|-++-+..+-....+. .+|+.|=..+ +.++..-. ++++++-++-
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL----Ek~~~q~~----qLe~d~qs~l 153 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL----EKLREQIE----QLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH----HHHHHHHH----HHHHHHHHHH
Confidence 555555555555444444444444444333322221111 3333333332 22222221 2334444444
Q ss_pred hcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000847 657 LDKEAFEATMRHEQLVLSEKA---KNDRRKMLEEFEMQRMNQEAE-LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLK 732 (1255)
Q Consensus 657 ~ekEsF~~~M~hE~s~~~eK~---q~Erad~l~d~EmqkreLE~~-~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lk 732 (1255)
-++++++ -||+..-.|+ ..|-+.+|.+=+..--+++.- |+| +||++|-+..++|+.--..+|+-.|
T Consensus 154 DEkeEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 154 DEKEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 2344333333 334444444322222222222 233 6999999999999999999999988
Q ss_pred HHHHH
Q 000847 733 EVAEG 737 (1255)
Q Consensus 733 e~a~k 737 (1255)
.++.+
T Consensus 224 ~~le~ 228 (319)
T PF09789_consen 224 SALER 228 (319)
T ss_pred HHHHh
Confidence 87763
No 128
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.35 E-value=3.3e+02 Score=32.34 Aligned_cols=39 Identities=31% Similarity=0.282 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccch
Q 000847 773 DIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNC 811 (1255)
Q Consensus 773 dIeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK~cknc 811 (1255)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+-=.|
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999965443
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=60.57 E-value=2.8e+02 Score=30.94 Aligned_cols=172 Identities=20% Similarity=0.296 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 508 EKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 587 (1255)
Q Consensus 508 EK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkE 587 (1255)
-++|..+...|...-+-+....+-|---...+..+.+-+.++-+.-+..++|=.+ ||..+-.+-.+..-|++.
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-------Lk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-------LKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333344444444444555555555554333 334444444567778888
Q ss_pred HhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 000847 588 HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 667 (1255)
Q Consensus 588 ae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 667 (1255)
+-.|..+...+.++|+.|-+....|.-+...+...- ..|-.+..+++.++- ..++|-+.|++|.+.--
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~-----------~eL~~~~~~Lq~Ql~-~~e~l~~~~da~l~e~t 157 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRS-----------KELATEKATLQRQLC-EFESLICQRDAILSERT 157 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH-----------HHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 888888899999999888887777776666655332 334446666666552 57889999999988766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000847 668 HEQLVLSEKAKNDRRKMLEEFEMQRMNQEAEL 699 (1255)
Q Consensus 668 hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~ 699 (1255)
+--..+..-| .|-.....++-.-+..||.-|
T Consensus 158 ~~i~eL~~~i-eEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 158 QQIEELKKTI-EEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5555544333 344455666666666666655
No 130
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.56 E-value=1.8e+02 Score=37.70 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 503 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQE 582 (1255)
Q Consensus 503 sl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke 582 (1255)
.+...=.+|+.++.+++..++++..+..++++.+..++.++.++.++.++ ....++.+..+-|...|.+-+
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~---------~~~~~~~~a~~~l~~a~~~~~ 587 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK---------LLEEAEKEAQQAIKEAKKEAD 587 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555433332 233344555566666666666
Q ss_pred HHHHHHhH
Q 000847 583 LLLKEHED 590 (1255)
Q Consensus 583 ~LlkEae~ 590 (1255)
.++++..+
T Consensus 588 ~~i~~lk~ 595 (782)
T PRK00409 588 EIIKELRQ 595 (782)
T ss_pred HHHHHHHH
Confidence 66666544
No 131
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.93 E-value=5.9e+02 Score=34.52 Aligned_cols=100 Identities=26% Similarity=0.260 Sum_probs=61.1
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhhhccHHHHHHH
Q 000847 488 NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEI----DQIESENAQQELQIQEECQKLKINEEEKSEL 563 (1255)
Q Consensus 488 kdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~el----EK~~a~~e~q~~qi~ee~e~LkiteeEr~E~ 563 (1255)
++.+.+.++++.-=+.++...++|.....-+..-+++|.+.+.+. -+...++-+-..++.+-.++|+-+..+..
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~-- 321 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVE-- 321 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 356677788888778888888888888888888888887755443 33334444444555555555544443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000847 564 LRLQSQLKQQIETYRHQQELLLKEHEDLQQD 594 (1255)
Q Consensus 564 l~LqseLKeEIe~~R~Qke~LlkEae~Lk~e 594 (1255)
+++...+.++.+.+..++.+...+..
T Consensus 322 -----~~~~~le~lk~~~~~rq~~i~~~~k~ 347 (1072)
T KOG0979|consen 322 -----EKKNKLESLKKAAEKRQKRIEKAKKM 347 (1072)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666555555543
No 132
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=59.75 E-value=95 Score=41.46 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=7.6
Q ss_pred HHHHHHHHhhcccc
Q 000847 796 ERFLEFVEKHTSCK 809 (1255)
Q Consensus 796 e~fl~~vEklK~ck 809 (1255)
..++.-++....|.
T Consensus 527 ~~~~~~~~~~~~~~ 540 (1021)
T PTZ00266 527 SYFLKGMENGLSAG 540 (1021)
T ss_pred hhhhhhcccccccc
Confidence 45566566555443
No 133
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.24 E-value=2.2e+02 Score=36.94 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000847 511 LELEKQKLIADKESLQILKVEIDQIESENAQQELQIQE 548 (1255)
Q Consensus 511 lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~e 548 (1255)
|+.++..++..++++..++.++++.+..++++..++.+
T Consensus 520 L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 520 LSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 134
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=59.22 E-value=3.2e+02 Score=31.28 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhh
Q 000847 245 ESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLN 298 (1255)
Q Consensus 245 EaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LN 298 (1255)
.++...+..+...+.++...++..+..-+..+..++..+...+..+...+..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555544444444444333
No 135
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.01 E-value=2.1e+02 Score=37.08 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 504 VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQEL 583 (1255)
Q Consensus 504 l~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~ 583 (1255)
+.....+++.-...|..++.+++..+.++++.+.+++..+.++.++.+.|+.- .+..+..++.+..+.|...|.+-+.
T Consensus 506 ~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~--~~~~~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 506 YGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER--ERNKKLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666677777777777777777776666666666665542 2223334455566666666666555
Q ss_pred HHHHH
Q 000847 584 LLKEH 588 (1255)
Q Consensus 584 LlkEa 588 (1255)
+.++.
T Consensus 584 ~i~~l 588 (771)
T TIGR01069 584 IIREL 588 (771)
T ss_pred HHHHH
Confidence 55544
No 136
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.43 E-value=5.5e+02 Score=33.35 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHH
Q 000847 620 ADEKKKLEKLQHSAEERLKKEECAMRDYVQREIE 653 (1255)
Q Consensus 620 ~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE 653 (1255)
.+.-.-||.-+ +.+.|||.+.=-.=-..+|++|
T Consensus 600 qdk~~~LE~sL-saEtriKldLfsaLg~akrq~e 632 (697)
T PF09726_consen 600 QDKNQHLENSL-SAETRIKLDLFSALGDAKRQLE 632 (697)
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444 4555666554333333344443
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.70 E-value=3.6e+02 Score=33.52 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000847 469 LERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 546 (1255)
Q Consensus 469 l~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi 546 (1255)
+....+.++.++..+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|...|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455667777777777777777777888887777776443 44555555555554444445555555555555544
No 138
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.43 E-value=1.6e+02 Score=33.06 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred ccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhh
Q 000847 210 EGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSL 258 (1255)
Q Consensus 210 eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf 258 (1255)
+.+..+.+.+|...+.....++..-.....+...++..-..++.++..+
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~L 52 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEEL 52 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555444444444444444444443333333333333
No 139
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=55.58 E-value=4.8e+02 Score=34.25 Aligned_cols=57 Identities=30% Similarity=0.389 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhhHHHHH
Q 000847 445 EEEMRSKISALDQQEFEISHREEKLERREQALDK--KSDRVKEKENDLAARLKSVKERE 501 (1255)
Q Consensus 445 eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~--k~~~lkEKEkdl~~K~k~LKEkE 501 (1255)
+++|.+|..++-+-|--+...-+.+.--|..|-. +++++-+.|-.|..+.+++---+
T Consensus 97 E~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~ae 155 (916)
T KOG0249|consen 97 ENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAE 155 (916)
T ss_pred HHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4445555555555444444433333333333322 26677778888888877765433
No 140
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=54.24 E-value=5.3e+02 Score=32.26 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=8.1
Q ss_pred HHhhhhHHhhHHhHHH
Q 000847 387 DCLRSTVEMKEKRLLT 402 (1255)
Q Consensus 387 ~~~~~~Le~KEkeLl~ 402 (1255)
+..+.+.+.||.+..+
T Consensus 195 ~~rk~m~D~KEreaee 210 (489)
T PF05262_consen 195 DKRKDMVDIKEREAEE 210 (489)
T ss_pred hhhhhhHHHHHHHhHH
Confidence 3445555555555443
No 141
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=54.16 E-value=6.9e+02 Score=33.53 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=54.4
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 652 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL---NRRDKMEKELQERTRTFEEKRERV 724 (1255)
Q Consensus 652 lE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~---~r~EE~E~~L~EREk~FEeek~~E 724 (1255)
+|.+.++..- ..+|-.+.....+.+.+|.+-++..|+-+.+++.+..+ +...+++-.|.+|-+.|.+...++
T Consensus 475 le~~~~~~~~-~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 475 LEELQRAAGR-AETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444332 34566778888889999999999999999888777665 566778888888988888887777
No 142
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=54.06 E-value=6.4e+02 Score=33.10 Aligned_cols=351 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHhHhhhhccchhHHHhhhhhHHH----HHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhH-
Q 000847 202 ANTLLGGIEGKSLEVEEKFHAAEA----KLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDL- 276 (1255)
Q Consensus 202 A~aLv~~~eeKslEvE~Kl~aAea----klAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L- 276 (1255)
|++|.....-++-.-.-|..++.+ .-+|+...-+++++|.+-.=---|+|||+.-|++.|.-+.=.. |+
T Consensus 375 ~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~------DeL 448 (961)
T KOG4673|consen 375 AKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK------DEL 448 (961)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh------HHH
Q ss_pred ---HHHHHhhchhhhhhHHHH----HhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHH-------HHHHH
Q 000847 277 ---REWEKKLQIGDERLSELR----RTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERED-------EINSR 342 (1255)
Q Consensus 277 ---~eweKkLqe~eerL~~~q----r~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~ked-------di~~r 342 (1255)
.|.=..|+..-+.|.+-| .+|..=--++.+++.+++.+-+-+-.++.....-+..|..|+. .|..-
T Consensus 449 aEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 449 AEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhh-hhHHhhhhHHhhHHhH----HHHHHHHhhHHHHHHHH
Q 000847 343 LAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQ-EADCLRSTVEMKEKRL----LTIEEKLNARERVEIQK 417 (1255)
Q Consensus 343 la~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~Le~KEkeL----l~leEKL~aRE~~eIQk 417 (1255)
-+.++-.++ .|++.-.+-.... -+-+.+..++--=++| ..-|+-+-+++.+-+|.
T Consensus 529 ~ae~~rq~~--------------------~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqq 588 (961)
T KOG4673|consen 529 QAELTRQKD--------------------YYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQ 588 (961)
T ss_pred HHHHHHHHH--------------------hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhh------------------hhhhhhHHHHHHHHHHHHHh
Q 000847 418 LLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQE------------------FEISHREEKLERREQALDKK 479 (1255)
Q Consensus 418 Lldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rE------------------vei~h~Eekl~krEqaLe~k 479 (1255)
| --|+-+.+--|--+.-+---|-.||..=-+-+.--| ..|-.+.+-++++--+-++.
T Consensus 589 v-----~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawere 663 (961)
T KOG4673|consen 589 V-----EDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWERE 663 (961)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHH
Q 000847 480 SDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEE 559 (1255)
Q Consensus 480 ~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeE 559 (1255)
-+.|.++=-|-..-|-.+-..| +++-.+|-..+-.|....=++-.|.++--.+.+.++....+.+ +-
T Consensus 664 E~~l~~rL~dSQtllr~~v~~e---qgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~----------~~ 730 (961)
T KOG4673|consen 664 ERSLNERLSDSQTLLRINVLEE---QGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAA----------EN 730 (961)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH---hhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh----------hh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000847 560 KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 596 (1255)
Q Consensus 560 r~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~eke 596 (1255)
|.||+++|.++-..-+.|-.=..++.++-..++++++
T Consensus 731 ~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq 767 (961)
T KOG4673|consen 731 RQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQ 767 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 143
>PF14992 TMCO5: TMCO5 family
Probab=53.78 E-value=3.5e+02 Score=31.62 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=46.0
Q ss_pred HHhhhhHHhhHHhHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhh
Q 000847 387 DCLRSTVEMKEKRLLT----IEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEI 462 (1255)
Q Consensus 387 ~~~~~~Le~KEkeLl~----leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei 462 (1255)
+++...|+.+++.|.+ |=-|+.++|. .||.| |-|+......+++. +-.-.-.+.+|.++
T Consensus 3 ~sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~-~iq~L---------------e~Eit~~~~~~~~~-e~e~~~~~~~e~~l 65 (280)
T PF14992_consen 3 MSLNMDLEKDEQRLDEANQSLLQKIQEKEG-AIQSL---------------EREITKMDHIADRS-EEEDIISEERETDL 65 (280)
T ss_pred chhccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------------HHHHHHHccccCch-hHHhhhhhchHHHH
Confidence 4556666777776643 2234444442 34444 44444444433333 11112226667777
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Q 000847 463 SHREEKLERREQALDKKSDRVKEKENDLAARLKSV 497 (1255)
Q Consensus 463 ~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~L 497 (1255)
...|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 66 ~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 66 QELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 66665544444433333444466666666555553
No 144
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=53.61 E-value=5.5e+02 Score=32.20 Aligned_cols=86 Identities=29% Similarity=0.311 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000847 556 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 635 (1255)
Q Consensus 556 teeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~e 635 (1255)
..+-|.|--.||++||.=--.|++=++.-+.|. |+|-+|=-.|=.+|----.-..|.+++...|-.+++-.-+--+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999999999999999888888887 6889999888888865555566788889999999999999999
Q ss_pred HhHHHHHHHH
Q 000847 636 RLKKEECAMR 645 (1255)
Q Consensus 636 rLK~Ek~~~r 645 (1255)
+||.||..-.
T Consensus 482 lLkrEKe~~E 491 (527)
T PF15066_consen 482 LLKREKETRE 491 (527)
T ss_pred HHHHHHHHHH
Confidence 9999988643
No 145
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=52.87 E-value=2.9e+02 Score=28.76 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=28.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 552 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 588 (1255)
Q Consensus 552 ~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEa 588 (1255)
.++.++.|-.+|+.|=..|-.-|.+||.....|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 3355788999999999999999999998876654433
No 146
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=52.12 E-value=3.1e+02 Score=32.56 Aligned_cols=154 Identities=22% Similarity=0.333 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH---HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 000847 413 VEIQKLLDDQRAILDAKQQEFEL---ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEND 489 (1255)
Q Consensus 413 ~eIQkLldeh~a~L~~Kk~eFEl---ElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkd 489 (1255)
-|+.++|---++.|..--.+.-+ .|.+.++.++.-+.+--.-+.+-=.||..-=+||+-||.-|+-++.-|-.+=+.
T Consensus 205 lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~ 284 (384)
T KOG0972|consen 205 LEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRR 284 (384)
T ss_pred HHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444443 466677777777777777788888899998999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHhhhhccHHHH-------
Q 000847 490 LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ--QELQIQEECQKLKINEEEK------- 560 (1255)
Q Consensus 490 l~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~--q~~qi~ee~e~LkiteeEr------- 560 (1255)
+..-+..++++-+.+.-- .+.....|..=-++++.+|.++|.-.+.+.+ =..+|.++.-+|+ +|+
T Consensus 285 a~~~lse~~e~y~q~~~g---v~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk---~et~~mnv~i 358 (384)
T KOG0972|consen 285 ATDTLSELREKYKQASVG---VSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK---EETQTMNVQI 358 (384)
T ss_pred HHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH---HHHHhhhhhe
Confidence 999999999887765432 2444445555556666666666655444432 2456666655553 444
Q ss_pred --HHHHHHHHHHHH
Q 000847 561 --SELLRLQSQLKQ 572 (1255)
Q Consensus 561 --~E~l~LqseLKe 572 (1255)
-+|..||+.|+.
T Consensus 359 gv~ehs~lq~~l~~ 372 (384)
T KOG0972|consen 359 GVFEHSILQTYLRD 372 (384)
T ss_pred ehhhHHHHHHHHHH
Confidence 367788888876
No 147
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.96 E-value=7.6e+02 Score=33.39 Aligned_cols=135 Identities=21% Similarity=0.319 Sum_probs=79.2
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 000847 396 KEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQA 475 (1255)
Q Consensus 396 KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqa 475 (1255)
|=++-++.=--|+|-++-.+||+.++ |+.|++|.+ ||...+ |.--..+..+|.+|+.-.-.
T Consensus 379 rLKdalVrLRDlsA~ek~d~qK~~ke----lE~k~sE~~-eL~r~k--------------E~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 379 RLKDALVRLRDLSASEKQDHQKLQKE----LEKKNSELE-ELRRQK--------------ERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH----HHHHhhHHH-HHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 44455555566788899999999764 455555553 222211 11112233344444432222
Q ss_pred HH------HhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000847 476 LD------KKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE 549 (1255)
Q Consensus 476 Le------~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee 549 (1255)
.| .-..-|.+|.-.|+.|.+.|.|-=.-|-+.+ +..-+.....++--..|--+|++......+=..++.-+
T Consensus 440 VDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEale---e~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aa 516 (1243)
T KOG0971|consen 440 VDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALE---EMNEQLQESNRELELDLREELDMAKGARKELQKRVEAA 516 (1243)
T ss_pred HHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 2235577788888888888877777776666 55555666666666667777777766665555556555
Q ss_pred Hhh
Q 000847 550 CQK 552 (1255)
Q Consensus 550 ~e~ 552 (1255)
++-
T Consensus 517 qet 519 (1243)
T KOG0971|consen 517 QET 519 (1243)
T ss_pred HHH
Confidence 553
No 148
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=50.80 E-value=6e+02 Score=31.86 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 000847 500 REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENA 540 (1255)
Q Consensus 500 kEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e 540 (1255)
-++.|+...+-|..-+++|+.-+.+-..|.+++.||++..-
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv 428 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYV 428 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 36777777778888888888888888899999999988654
No 149
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.67 E-value=2.6e+02 Score=36.34 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=46.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHhHH
Q 000847 462 ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESL-QILKVEIDQIESEN 539 (1255)
Q Consensus 462 i~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel-~~lK~elEK~~a~~ 539 (1255)
|..-.+.+......++.-...|.....+++.+...+......+.....+++.+...|.+.++.+ ..++.+.+.+....
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a 582 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEA 582 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666777777777777777777666666666666666666666666665555433 33344444333333
No 150
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.90 E-value=7.4e+02 Score=32.65 Aligned_cols=142 Identities=19% Similarity=0.293 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 000847 562 ELLRLQSQLKQQIETYRHQQELLLK--EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 639 (1255)
Q Consensus 562 E~l~LqseLKeEIe~~R~Qke~Llk--Eae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~ 639 (1255)
+|...|-.||++--........|.+ --|-|||-++..+.|-.++| -..+..+...++-.++.--+.-|.
T Consensus 879 d~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~e---------kdFv~kqqq~le~~lkrm~~~~k~ 949 (1187)
T KOG0579|consen 879 DMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKE---------KDFVMKQQQNLEAMLKRMAEKHKE 949 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777766555544444433 34678888888888776643 356667777777777766666677
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000847 640 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 714 (1255)
Q Consensus 640 Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~ERE 714 (1255)
|..++..++-.+--.|-++||.-.=. -|-.-+.+|-|--+.+|-...=|||+.|-..-++..+.|++|-+.-.
T Consensus 950 ema~iErecLm~Kq~LlRarEaaiWE--lEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~i 1022 (1187)
T KOG0579|consen 950 EMASIERECLMQKQNLLRAREAAIWE--LEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREI 1022 (1187)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666677777754433 44556788999999999999999999999999999999999877543
No 151
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.79 E-value=3.7e+02 Score=29.90 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 000847 579 HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 638 (1255)
Q Consensus 579 ~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK 638 (1255)
.+...|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|+
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445545555555555566666666555555555554444443
No 152
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=49.66 E-value=3.6e+02 Score=28.95 Aligned_cols=69 Identities=25% Similarity=0.435 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-------HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000847 464 HREEKLERREQALDKKSDRVKEKENDLAARLKS-------VKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIE 536 (1255)
Q Consensus 464 h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~-------LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~ 536 (1255)
..|+......++|..+...|.+-.+-|..++++ |.+.|-.|+.+.+.+. ..+++-|..++.-+++.+
T Consensus 82 ~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~------er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 82 ELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH------ERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555544444 4444444444433333 345666777777777766
Q ss_pred hH
Q 000847 537 SE 538 (1255)
Q Consensus 537 a~ 538 (1255)
.+
T Consensus 156 ~~ 157 (158)
T PF09744_consen 156 DE 157 (158)
T ss_pred hc
Confidence 54
No 153
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.65 E-value=1.6e+02 Score=30.78 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 000847 523 ESLQILKVEIDQIESENAQ 541 (1255)
Q Consensus 523 Eel~~lK~elEK~~a~~e~ 541 (1255)
+++..|..+|..++..+..
T Consensus 72 eel~~ld~ei~~L~~el~~ 90 (169)
T PF07106_consen 72 EELAELDAEIKELREELAE 90 (169)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 154
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=48.31 E-value=6.2e+02 Score=31.29 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=13.0
Q ss_pred HhhhHHHHHHHHHhhhHHHHHHHH
Q 000847 428 AKQQEFELELEEKRKSIEEEMRSK 451 (1255)
Q Consensus 428 ~Kk~eFElElE~kRKs~eeel~~K 451 (1255)
.-+.+|+.+..+.++.++++|+..
T Consensus 311 ~~~~e~~~~~~~l~~~~~~~L~~e 334 (582)
T PF09731_consen 311 ELREEFEREREELEEKYEEELRQE 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555543
No 155
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=48.05 E-value=6.4e+02 Score=31.34 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=65.9
Q ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHHHHH-----------HHhhhcHHHHHHHHHHHHHHHH----HHHHHHHHHHH--
Q 000847 623 KKKLEKLQHSAEERLKKEECAMRDYVQREI-----------EAIRLDKEAFEATMRHEQLVLS----EKAKNDRRKML-- 685 (1255)
Q Consensus 623 re~lek~~~~E~erLK~Ek~~~r~~~krel-----------E~L~~ekEsF~~~M~hE~s~~~----eK~q~Erad~l-- 685 (1255)
-|-+..++..+.--|++|+..+--.|.++- ..|+.++=.|+...++||--+- .||..--++-+
T Consensus 98 eEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~k 177 (552)
T KOG2129|consen 98 EEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLK 177 (552)
T ss_pred HHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 345556788888888888888777776554 5566666677777777763332 23322222211
Q ss_pred -HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 686 -EEFE---MQRMNQEAELLNRRDKMEKELQERTRTFEEKRE 722 (1255)
Q Consensus 686 -~d~E---mqkreLE~~~~~r~EE~E~~L~EREk~FEeek~ 722 (1255)
..+| ..+-+|||-++..||-+=+.|--|.-.+|.++.
T Consensus 178 q~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr 218 (552)
T KOG2129|consen 178 QNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKR 218 (552)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223 334468899999999999999999988888875
No 156
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.01 E-value=2.5e+02 Score=30.47 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000847 524 SLQILKVEIDQIESENAQQELQIQEE 549 (1255)
Q Consensus 524 el~~lK~elEK~~a~~e~q~~qi~ee 549 (1255)
.+..|+.+++.+...+.+-..+|..+
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333
No 157
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.39 E-value=3.6e+02 Score=28.31 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.2
Q ss_pred hhhhhH
Q 000847 461 EISHRE 466 (1255)
Q Consensus 461 ei~h~E 466 (1255)
++.+.+
T Consensus 96 el~~l~ 101 (191)
T PF04156_consen 96 ELDQLQ 101 (191)
T ss_pred HHHHHH
Confidence 333333
No 158
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.95 E-value=9.2e+02 Score=32.88 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=22.2
Q ss_pred hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHH
Q 000847 758 VNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERF 798 (1255)
Q Consensus 758 ~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe~f 798 (1255)
..++.++.+-..++..+.+...-+.+.+..+.+....|+-+
T Consensus 371 i~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~~~ 411 (1072)
T KOG0979|consen 371 IMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLENKKRKLK 411 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555443
No 159
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=46.80 E-value=4.7e+02 Score=29.44 Aligned_cols=112 Identities=14% Similarity=0.246 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 000847 570 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 649 (1255)
Q Consensus 570 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k 649 (1255)
+...++++..++.-..+..+ .=|.+|+..+-.++.-+..++. +....-. +.++++. .=-++.+..-...++.|+
T Consensus 105 ~e~~~ek~~K~~~~~~k~~~---ksKk~Ye~~Cke~~~a~~~~~~-~~~~~~~-ke~~K~~-~Kl~K~~~~~~k~~~~Y~ 178 (240)
T cd07672 105 IELIMDAIHKQRAMQFKKTM---ESKKNYEQKCRDKDEAEQAVNR-NANLVNV-KQQEKLF-AKLAQSKQNAEDADRLYM 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh-ccCCCCH-HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 35566777666666666554 4566788777654443332221 1111000 0111211 223456667778899999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 650 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 688 (1255)
Q Consensus 650 relE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~ 688 (1255)
.-++.|..-+..|+..|. .--..|..+.-||-+|+++.
T Consensus 179 ~~v~~l~~~~~~w~~~~~-~~c~~fq~lEeeRi~f~k~~ 216 (240)
T cd07672 179 QNISVLDKIREDWQKEHV-KACEFFEKQECERINFFRNA 216 (240)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 55556667788888888764
No 160
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.64 E-value=1.3e+02 Score=29.38 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=32.6
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000847 545 QIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFE 599 (1255)
Q Consensus 545 qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE 599 (1255)
+|.++.+-+...+=|=.|+----..|.++++.+|+.+..|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444555666777777777777777777777766543
No 161
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.89 E-value=1.6e+02 Score=33.21 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=41.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 000847 584 LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQR 650 (1255)
Q Consensus 584 LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kr 650 (1255)
+.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. +|.|||..+-..+|+++..
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhc
Confidence 3444455555555556666777788888888888777 8999999999999998864
No 162
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.33 E-value=7e+02 Score=31.02 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 000847 589 EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 667 (1255)
Q Consensus 589 e~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 667 (1255)
..+++.+.++-..-+.|-..+.++++++..+..--. ..+.|..+...++..|..--..|+..|........
T Consensus 311 ~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~--------~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~ 381 (563)
T TIGR00634 311 AQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE--------SLEALEEEVDKLEEELDKAAVALSLIRRKAAERLA 381 (563)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444432221 33445555555555555556666666665554433
No 163
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.79 E-value=2.2e+02 Score=33.74 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=33.8
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000847 476 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 530 (1255)
Q Consensus 476 Le~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~ 530 (1255)
+..+-..|++.|++|.+|+.-||.- -.-+.++|+..+.+|..|.-.++.-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~---h~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRL---HQEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556777888888888777653 223445677777777777766665544
No 164
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=44.72 E-value=3e+02 Score=35.04 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=25.6
Q ss_pred hccccchhhHHhHhhhhccchhHH----Hhhhhh----HHHHHHHhhcc
Q 000847 193 LFSEKTLTDANTLLGGIEGKSLEV----EEKFHA----AEAKLAEVNRK 233 (1255)
Q Consensus 193 ~~sesKLaeA~aLv~~~eeKslEv----E~Kl~a----AeaklAEa~Rk 233 (1255)
+-.+.||++-.-|.+++.--.-++ |.--|| |+++||-+-|-
T Consensus 248 vgpDrklaeeedlfdSahpeegDlDlasestAhaqsskadsllavvKRe 296 (940)
T KOG4661|consen 248 VGPDRKLAEEEDLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKRE 296 (940)
T ss_pred cCcccchhhccccccccCCcccccccccccchhcccccchhhhhhhhcC
Confidence 445778888888877775444333 223344 67777777665
No 165
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=44.70 E-value=7.3e+02 Score=31.05 Aligned_cols=361 Identities=20% Similarity=0.265 Sum_probs=173.2
Q ss_pred HHHhHHHHhhhhHHHHHHHHhhhHhHHH-hHHHHHHHhHhhHHHHHHhhch-hhhhhHHHHHhhhhHhhhhh-----hhH
Q 000847 236 ELEMKLQELESRESVIKRERLSLVTERE-AHEAAFYKQREDLREWEKKLQI-GDERLSELRRTLNQREVKAN-----ENE 308 (1255)
Q Consensus 236 ~~erKL~evEaRE~~LrRerlSf~~Ere-a~E~~~~~qRe~L~eweKkLqe-~eerL~~~qr~LNqREe~~n-----E~~ 308 (1255)
-..+.+.++|.|-..|...-+...-..- .. .=.=.--+.+..|.++-.+ .-..|.+....|+.=|+.++ -.-
T Consensus 26 ~~~~~i~~Le~~k~~l~~~pv~~el~kvk~l-~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~ 104 (569)
T PRK04778 26 RNYKRIDELEERKQELENLPVNDELEKVKKL-NLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAK 104 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHH
Confidence 3455667777777777654444332110 00 0000001345567766665 55666666666666665432 223
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhh-hhhh-h
Q 000847 309 RILKQKERDLEELEKKIDLSSSKLKE-REDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLN-FFFQ-E 385 (1255)
Q Consensus 309 ~~lk~kekeLEe~~kkie~~~~~Lk~-keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-e 385 (1255)
+.++..+..|+..+..|......|.. .+.+-.+|.+--.++++ |.. ++-.+.-+ +-|. .
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~---y~~---------------~rk~ll~~~~~~G~a 166 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDL---YRE---------------LRKSLLANRFSFGPA 166 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---------------HHHHHHhcCccccch
Confidence 34444555555555555555555544 22234456665666666 110 01111111 2222 4
Q ss_pred hHHhhhhHHhhHHhHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhH---HHHHHHHHHHHhhhh
Q 000847 386 ADCLRSTVEMKEKRLLTIEEKLNARERV---EIQKLLDDQRAILDAKQQEFELELEEKRKSI---EEEMRSKISALDQQE 459 (1255)
Q Consensus 386 ~~~~~~~Le~KEkeLl~leEKL~aRE~~---eIQkLldeh~a~L~~Kk~eFElElE~kRKs~---eeel~~K~~~~e~rE 459 (1255)
++.++..|..-|.+...|.+=-++=.=+ +|-.-+.++-..|.....++=.=+..-.+-| =++|+.-.+.+...=
T Consensus 167 ~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~g 246 (569)
T PRK04778 167 LDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEG 246 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 5666666666666666666544332222 2222333333444444333311112222212 134444445554444
Q ss_pred hhhhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Q 000847 460 FEISHR--EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADK---ESLQILKVEIDQ 534 (1255)
Q Consensus 460 vei~h~--Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dk---Eel~~lK~elEK 534 (1255)
..+.|. +..|..-...+..-+..++.. .|+.-+..+...+..|..--..|.++. ..+.+....+.+
T Consensus 247 y~~~~~~i~~~i~~l~~~i~~~~~~l~~l---------~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~ 317 (569)
T PRK04778 247 YHLDHLDIEKEIQDLKEQIDENLALLEEL---------DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD 317 (569)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHhc---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444442 333332222222211112211 112222222222222222222222222 222333333333
Q ss_pred HHhHHHHHHHHHHHHHhhhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHH
Q 000847 535 IESENAQQELQIQEECQKLKIN----EEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRD 610 (1255)
Q Consensus 535 ~~a~~e~q~~qi~ee~e~Lkit----eeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~ 610 (1255)
....+.++..++..+.+.|.-+ ..|-.. ...|.++|..+..+...+...+......-..+..+|+.|.++.+
T Consensus 318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~----~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~le 393 (569)
T PRK04778 318 FLEHAKEQNKELKEEIDRVKQSYTLNESELES----VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLE 393 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333 555333 44677777888888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000847 611 EINKEQEKIADEKKKLEK 628 (1255)
Q Consensus 611 el~KE~~~I~eEre~lek 628 (1255)
+|.++...|.+.=..|.+
T Consensus 394 eie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 394 EIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888855444443
No 166
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=44.36 E-value=5.8e+02 Score=29.86 Aligned_cols=140 Identities=19% Similarity=0.264 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Q 000847 527 ILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD 606 (1255)
Q Consensus 527 ~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LD 606 (1255)
.-..+++..++.-+++..-+.++.+.-..+..-.++|.|--++=+-+-...+.+...-+.|.--+|+|-.+..-|=+.+-
T Consensus 79 ~~q~~~e~~rv~~EE~Rkt~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~~ 158 (276)
T PF12037_consen 79 QAQAEIERQRVEAEERRKTLQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQILA 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888887777777777777766655444445555555556666677888888888777775
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 000847 607 EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKN 679 (1255)
Q Consensus 607 EKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~ 679 (1255)
.+|..+..|++- +|+ ++..++.-| -.-+....|+.+.| -++....++..+|.-|.+-|+.
T Consensus 159 ~r~~t~~~eaeL---~~e-------~~~~k~~AE-a~gra~~eReN~Di--~l~~l~~ka~e~R~t~lesI~t 218 (276)
T PF12037_consen 159 QRRQTEEEEAEL---RRE-------TERAKAEAE-AEGRAKEERENEDI--NLEQLRLKAEEERETVLESINT 218 (276)
T ss_pred HHHHhHHHHHHH---HHH-------HHHHHHHHH-HHHHHHHHHHhHhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444321 111 111111111 11223333333333 3445667777777777776654
No 167
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=44.09 E-value=4.9e+02 Score=28.91 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=102.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000847 517 KLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 596 (1255)
Q Consensus 517 ~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~eke 596 (1255)
.-..+-.-+..++..|.++...++.+.++-.+.... ||..+-+.|..+...-+-... .-..
T Consensus 28 Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~-------------lq~~~e~~i~~~~~~v~~~~~------~~~~ 88 (247)
T PF06705_consen 28 RREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKK-------------LQSKFEEQINNMQERVENQIS------EKQE 88 (247)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 344555567777777888887777777666544443 345555555554433222111 1123
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 000847 597 KFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEK 676 (1255)
Q Consensus 597 kFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK 676 (1255)
.|..=|..|..|=..|... |.+++..+...+..--..|..+..++...+..+--.-.-.-...+.+|...-..+..+
T Consensus 89 ~~~~~l~~L~~ri~~L~~~---i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~ 165 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEE---IQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEK 165 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677666666543 4444444444443334456666666666666655444444455666666666666666
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 677 AKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQ 740 (1255)
Q Consensus 677 ~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~E 740 (1255)
+..|+..--..+.--+.+++ ..+.-+.+.=+.=+...|+.|++++..+..|.+
T Consensus 166 i~~Ek~~Re~~~~~l~~~le-----------~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~ 218 (247)
T PF06705_consen 166 IEKEKNTRESKLSELRSELE-----------EVKRRREKGDEQFQNFVLEEIAALKNALALESQ 218 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554444333333333 333333333333344566677777766655544
No 168
>PRK10869 recombination and repair protein; Provisional
Probab=44.07 E-value=7.4e+02 Score=31.00 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=47.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH
Q 000847 722 ERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ 790 (1255)
Q Consensus 722 ~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~ 790 (1255)
+.-|..|+.|+-.-..-+++|-.-+..++.|-..+.-..+.++.=..++.+-=++|..+..+|-..|..
T Consensus 302 e~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 302 EQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888899999999999999988887766555554444444444455555555555544
No 169
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.71 E-value=3e+02 Score=26.01 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 000847 660 EAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 709 (1255)
Q Consensus 660 EsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~ 709 (1255)
+.+...+..+=..+...+...+..|+..|+-........|......++..
T Consensus 38 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 38 ADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444555555555555544444444444444444443
No 170
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=42.56 E-value=5.5e+02 Score=29.00 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHhHhhhhhcccceeeeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhH
Q 000847 92 DREALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEK 171 (1255)
Q Consensus 92 d~~aL~a~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e~e~~lKREqaahl~AlsEaeKREEnLkKALgiEK 171 (1255)
+-++|-.+|.-|+-++-..|--. +..+.|.++.-|+.++++-+.
T Consensus 5 ~va~lnrri~~leeele~aqErl-------~~a~~KL~Eaeq~~dE~er~~----------------------------- 48 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERL-------ATALQKLEEAEQAADESERGM----------------------------- 48 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcccHHHHHH-----------------------------
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHH
Q 000847 172 QCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVI 251 (1255)
Q Consensus 172 qCvadLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~L 251 (1255)
-.||.........+ -..+..|.+|..+...+..|..+|-.||-.-++-|-.+..+.-.++-+..+++---+.+
T Consensus 49 ---Kv~enr~~kdEE~~----e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~ 121 (205)
T KOG1003|consen 49 ---KVIENRAQKLEEKM----EAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRIL 121 (205)
T ss_pred ---HHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhh
Q 000847 252 KRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSK 331 (1255)
Q Consensus 252 rRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~ 331 (1255)
....-||..=-+-++.....--.-|+.---||.+.+-|---+-|. +...++..+.++.++......
T Consensus 122 ~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERs--------------VakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 122 DSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERR--------------VAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHH--------------HHHHcccHHHHHHhhHHHHHH
Q ss_pred hhhhHHHHHHHHHHHH
Q 000847 332 LKEREDEINSRLAELV 347 (1255)
Q Consensus 332 Lk~keddi~~rla~L~ 347 (1255)
-....++|..-+.+|.
T Consensus 188 y~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 188 YEEAKKELDETLQELE 203 (205)
T ss_pred HHHHHHHHHHHHHHhh
No 171
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=42.32 E-value=8.6e+02 Score=31.25 Aligned_cols=251 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHH------------HHHHHHHH
Q 000847 411 ERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLE------------RREQALDK 478 (1255)
Q Consensus 411 E~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~------------krEqaLe~ 478 (1255)
||+.--.=|.+..+.+.-|.++.-.++...++.-+..+.. +...|..|......+. ..|++|..
T Consensus 12 Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~----V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~ 87 (617)
T PF15070_consen 12 ERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISR----VQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQA 87 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcccCCccccccchHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHH
Q 000847 479 KSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEE 558 (1255)
Q Consensus 479 k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lkitee 558 (1255)
..+.|..--..|.+++.+.-+--..|...-...+.....|...-+.+..-..|..++++.++..+.-|.-+...=+
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~---- 163 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR---- 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 000847 559 EKSELLRLQSQLKQQIETYRHQQELLLKEH--------------EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 624 (1255)
Q Consensus 559 Er~E~l~LqseLKeEIe~~R~Qke~LlkEa--------------e~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre 624 (1255)
+||+++..+-.---.|..+- ..|...-...+-+|..+-++=+.-..|+..+..++.
T Consensus 164 ----------eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d 233 (617)
T PF15070_consen 164 ----------ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD 233 (617)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000847 625 KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ 695 (1255)
Q Consensus 625 ~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreL 695 (1255)
.+..++ .+|......|..+++..-.-+-. +.-+..++|.+-++-.-.+||+..+|
T Consensus 234 q~~~~L---------------qqy~a~~q~l~~e~e~L~~q~l~-Qtql~d~lq~eE~q~~~~~E~~~~EL 288 (617)
T PF15070_consen 234 QYLGHL---------------QQYVAAYQQLASEKEELHKQLLQ-QTQLMDRLQHEESQGKVQLEMAHQEL 288 (617)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHH
No 172
>PLN03188 kinesin-12 family protein; Provisional
Probab=41.98 E-value=9.3e+02 Score=33.61 Aligned_cols=151 Identities=25% Similarity=0.308 Sum_probs=74.5
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHHHHH-H------hhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHh
Q 000847 158 KREDNLRRALSMEKQCVADLEKALRD-M------GEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEV 230 (1255)
Q Consensus 158 KREEnLkKALgiEKqCvadLEKAL~e-m------r~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa 230 (1255)
-+-|.||--|..||.|...|.-||+- | =+-||+.-=..-.=|+--..++++|. |-|..||.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka----- 1147 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA----- 1147 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-----
Confidence 34578999999999999999999963 2 23333332222222222333333332 223333332
Q ss_pred hccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhc-----------hhhh---hhHHHHHh
Q 000847 231 NRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQ-----------IGDE---RLSELRRT 296 (1255)
Q Consensus 231 ~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLq-----------e~ee---rL~~~qr~ 296 (1255)
.+|-. + -|=..+|.+|.-|+-.+-.++|+.|++=-|.|| -.-| ||-+...-
T Consensus 1148 g~kg~------------~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea 1212 (1320)
T PLN03188 1148 GVRGA------------E---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA 1212 (1320)
T ss_pred ccccc------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 0 122333444444444444455555555444444 2222 33333444
Q ss_pred hhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhh
Q 000847 297 LNQREVKANENERILKQKERDLEELEKKIDLSSSKLKE 334 (1255)
Q Consensus 297 LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~ 334 (1255)
+.-=+++++...+.-...-+.++.+++|-+.+..+|+.
T Consensus 1213 ~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1213 LTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444455566666666666666644
No 173
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=41.94 E-value=5.5e+02 Score=28.87 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=42.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHH-----HHHHH
Q 000847 497 VKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRL-----QSQLK 571 (1255)
Q Consensus 497 LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~L-----qseLK 571 (1255)
+..|.-.|..-+.+|...+....-=++.+..+..++..++..+..- +....+.......+.....+. -..|.
T Consensus 61 ~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~---~~~~~~~~~l~~~deak~~~~~~~~~~~~l~ 137 (202)
T PF06818_consen 61 LRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA---GRLKRQCQLLSESDEAKAQRQAGEDELGSLR 137 (202)
T ss_pred HHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh---ccchhhhccccccchhHHhhccccccchhHH
Confidence 3334444444444444444333333444555566666555555443 000111111112222222221 22355
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000847 572 QQIETYRHQQELLLKEHEDLQQDREKFEKE 601 (1255)
Q Consensus 572 eEIe~~R~Qke~LlkEae~Lk~ekekFE~E 601 (1255)
.+++.+|+ +|..|......+...|+.|
T Consensus 138 ~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 138 REVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred HHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 56666554 3455555555666677665
No 174
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.77 E-value=2.2e+02 Score=35.70 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000847 521 DKESLQILKVEIDQIESENAQQELQIQ 547 (1255)
Q Consensus 521 dkEel~~lK~elEK~~a~~e~q~~qi~ 547 (1255)
.=.+|...+.++++++.++.+.+.+|.
T Consensus 210 ~p~~i~~~~~e~d~lk~e~~~~~~~i~ 236 (555)
T TIGR03545 210 NPLELQKIKEEFDKLKKEGKADKQKIK 236 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666666555555554
No 175
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=41.72 E-value=70 Score=35.42 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHH
Q 000847 718 EEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKER 797 (1255)
Q Consensus 718 Eeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe~ 797 (1255)
+.+-.+++..+-+..+.+.++|.++..|.+.|+.||+.+..+|+....+..+--..| .-+|-+|..+...
T Consensus 33 e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~----------e~~r~~fekekqq 102 (228)
T PRK06800 33 EEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEI----------EAARQQFQKEQQE 102 (228)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 344455666666677777888888888888888888888877776655544433333 3455556655554
Q ss_pred H
Q 000847 798 F 798 (1255)
Q Consensus 798 f 798 (1255)
.
T Consensus 103 ~ 103 (228)
T PRK06800 103 T 103 (228)
T ss_pred H
Confidence 4
No 176
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.62 E-value=8.1e+02 Score=30.70 Aligned_cols=130 Identities=17% Similarity=0.230 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 000847 443 SIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADK 522 (1255)
Q Consensus 443 s~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dk 522 (1255)
.+.+++..-.......++++...+..+....++...+.+.|.+-+..|...+++|-.+ . |+..-.++.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~--i-------le~k~~~f~--- 131 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANR--I-------FEHSNRRVD--- 131 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHH---
Confidence 3444555555555556666666666666666666666666666666666666655432 1 111111111
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000847 523 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 593 (1255)
Q Consensus 523 Eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ 593 (1255)
..-+..|+.+..=+.+++..+....+.+ ..++..++ ..|+++|..+..+-..|..||.+|-.
T Consensus 132 ---~~~~~~l~~ll~Pl~e~l~~f~~~v~~~--~~~~~~~~----~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 132 ---EQNRQSLNSLLSPLREQLDGFRRQVQDS--FGKEAQER----HTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223344444444444444333322 12223333 56788888898899999999988854
No 177
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=41.28 E-value=6.9e+02 Score=29.84 Aligned_cols=301 Identities=20% Similarity=0.258 Sum_probs=164.0
Q ss_pred HHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhh
Q 000847 225 AKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKA 304 (1255)
Q Consensus 225 aklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~ 304 (1255)
..+.++..-..++++.+.++..--+.|.+.+..+....++...-+..-.+.|..+++.+.- +-.--.+...|..=-+-|
T Consensus 50 ~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~-dlv~D~ve~eL~kE~~li 128 (384)
T PF03148_consen 50 QRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGI-DLVHDEVEKELLKEVELI 128 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCc-ccCCCcHHHHHHHHHHHH
Confidence 3566777778888888888888888888888877777777777777777777766644331 001111111111100111
Q ss_pred hhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhh
Q 000847 305 NENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQ 384 (1255)
Q Consensus 305 nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1255)
...- ...++-++.+...|-.-.++-...+.|+..+...+.+-.. .++|-.+|.++.|+....
T Consensus 129 ~~~~---~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~---------------~~~L~~~S~~i~~~~~~~ 190 (384)
T PF03148_consen 129 ENIK---RLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQ---------------CLSLNNNSTNISYKPGST 190 (384)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhCCCccCCCcccCCcc
Confidence 1111 1234455566666666666666778888888888888776 233444444444442211
Q ss_pred h-----------hHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHH
Q 000847 385 E-----------ADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKIS 453 (1255)
Q Consensus 385 e-----------~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~ 453 (1255)
- ..-....+..-++++.. +..=|..|..++..- =-.|......++.-|..++.
T Consensus 191 r~~~~~~tp~~W~~~s~~ni~~a~~e~~~-----S~~LR~~i~~~l~~~-----------~~dl~~Q~~~vn~al~~Ri~ 254 (384)
T PF03148_consen 191 RIPKNSSTPESWEEFSNENIQRAEKERQS-----SAQLREDIDSILEQT-----------ANDLRAQADAVNAALRKRIH 254 (384)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 1 11112233332222211 111133343333322 22344445556666666655
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH----HHhhHHHHHHHH
Q 000847 454 ALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQK----LIADKESLQILK 529 (1255)
Q Consensus 454 ~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~----L~~dkEel~~lK 529 (1255)
+.. ....+-|..|.+-...+.+.|+.+..-=+++..|+..|+-.+-.|+..... |=.|.-. ..|.
T Consensus 255 et~----------~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q-~~L~ 323 (384)
T PF03148_consen 255 ETQ----------EAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQ-YGLI 323 (384)
T ss_pred HHH----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHH-HHHH
Confidence 543 333444455555566777778888888888888888888888888765431 2222211 2344
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH
Q 000847 530 VEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYR 578 (1255)
Q Consensus 530 ~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R 578 (1255)
.|+..+...+..=..++.++. .-...|..-++.|-++|..-+
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~-------~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAE-------ASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555554554444 344455666667777766443
No 178
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=41.02 E-value=3.5e+02 Score=27.15 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhhccCCCccccchhhh--hhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHH--------------HH
Q 000847 352 VGFLAYLIYLLYFICAYSLPSFSYNVLLN--FFFQEADCLRSTVEMKEKRLLTIEEKLNARERV--------------EI 415 (1255)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~--------------eI 415 (1255)
...+...+.|++|+..|.+|.+..-+.=- .|...++.-+.....-+.-+...+.+|..-... +.
T Consensus 9 ~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~ 88 (140)
T PRK07353 9 PLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLA 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 416 QKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455 (1255)
Q Consensus 416 QkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 455 (1255)
..+++.-+..++..+.....+++..+...-.+|+..+..+
T Consensus 89 ~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~l 128 (140)
T PRK07353 89 AEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDAL 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 179
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.70 E-value=5.3e+02 Score=28.30 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000847 639 KEECAMRDYVQREIEAI 655 (1255)
Q Consensus 639 ~Ek~~~r~~~krelE~L 655 (1255)
......|.++-+++-.+
T Consensus 140 ~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 140 SQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444544443
No 180
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=40.51 E-value=8.3e+02 Score=30.54 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=18.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 722 ERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKH 754 (1255)
Q Consensus 722 ~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~ 754 (1255)
+.|..+.|-.|.-|.++|...+-.-.+|.|-|-
T Consensus 346 E~E~q~~~kkrqnaekql~~Ake~~eklkKKrs 378 (575)
T KOG4403|consen 346 EVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRS 378 (575)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 445555555566666666655555555555443
No 181
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.37 E-value=5.4e+02 Score=28.28 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=101.2
Q ss_pred hHHHHHHHhc--cchhHHhhhhcHH-HHHHHHHHHHHhHhhhhhcccceeeeccchhhhHHHHHHHHHH----HHHHHHH
Q 000847 72 DDWRRFREAG--LLDEATMERKDRE-ALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEE----TQEILKR 144 (1255)
Q Consensus 72 ~~w~r~~e~g--~lde~s~~r~d~~-aL~a~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e----~e~~lKR 144 (1255)
.+|+||.... -++..--+--||. .|--+|..++..|....-.+.-++-.++-..-+|+++...+.. |+..|+.
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4788888764 2233333446888 7778899999999998888888888888888888887766543 2333331
Q ss_pred --hhhhhhhHHH---HHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccc-----cc----------------
Q 000847 145 --EQSAHLIAFS---EAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSE-----KT---------------- 198 (1255)
Q Consensus 145 --Eqaahl~Als---EaeKREEnLkKALgiEKqCvadLEKAL~emr~E~AeiK~~se-----sK---------------- 198 (1255)
|--|. -||. .++..=..|...+.--+.-|..|..-|++|+..+.++|..-. .+
T Consensus 82 G~EdLAr-~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~ 160 (219)
T TIGR02977 82 GREDLAR-AALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGR 160 (219)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11111 1222 223334456666666777788888888888888877775544 32
Q ss_pred hhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhh
Q 000847 199 LTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELE 245 (1255)
Q Consensus 199 LaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evE 245 (1255)
+..|...++-++.|....|+.--+.. ....+.++.+|.+++
T Consensus 161 ~~~a~~~fer~e~ki~~~ea~aea~~------~~~~~~l~~~l~~l~ 201 (219)
T TIGR02977 161 SDEAMARFEQYERRVDELEAQAESYD------LGRKPSLEDEFAELE 201 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh------ccCCCCHHHHHHHhc
Confidence 33344444555566544444322221 112445777777765
No 182
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=39.62 E-value=1.1e+03 Score=31.77 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 000847 541 QQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKE 615 (1255)
Q Consensus 541 ~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE 615 (1255)
+=+.+.++-..+|.+.+.--.+..+.-..|-..|+.+-.+...+..=+++....-+.|+.|-..|+.+-++++..
T Consensus 442 ~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 442 DLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444555555555555555555555555555555666666665555555544
No 183
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=39.02 E-value=5.7e+02 Score=28.24 Aligned_cols=70 Identities=23% Similarity=0.367 Sum_probs=55.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHh-HHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 000847 122 KEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKR-EDNLRRALSMEKQCVADLEKALRDMGEERAQTK 192 (1255)
Q Consensus 122 KEwtSk~eel~qa~~e~e~~lKREqaahl~AlsEaeKR-EEnLkKALgiEKqCvadLEKAL~emr~E~AeiK 192 (1255)
+-+......+++.+++..-..|+.|...-.-|...+.+ .+-+.|-+.||..|+. ||.-+..++.+.++-+
T Consensus 146 ~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~-Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 146 KRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEE-LEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 45566777888888888888899998888878777765 5667899999999984 7888888887776543
No 184
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.00 E-value=5.5e+02 Score=28.00 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHH
Q 000847 524 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSEL 563 (1255)
Q Consensus 524 el~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~ 563 (1255)
....++..++++...++.-..+|.+.+..|...+..|.+-
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444555555555555555555555555555555555443
No 185
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.00 E-value=3.5e+02 Score=26.55 Aligned_cols=58 Identities=22% Similarity=0.485 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 000847 563 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 624 (1255)
Q Consensus 563 ~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre 624 (1255)
|..|+++.++=||++ .+|.-|+++||.+......|=..+-.-|.+|..+...+..++-
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456888999988886 5677888888877666666655555555555555554444443
No 186
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.53 E-value=6.6e+02 Score=31.67 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 000847 445 EEEMRSKISALDQQEFEISHREEKLERREQALDK 478 (1255)
Q Consensus 445 eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~ 478 (1255)
+..--.|+.....|.++|+||=-+|.-.-+-|.+
T Consensus 371 ~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~ 404 (508)
T KOG3091|consen 371 HADAVAKIEEAKNRHVELSHRILRVMIKQEILRK 404 (508)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455555555555555554444443333333
No 187
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=38.29 E-value=4.5e+02 Score=31.48 Aligned_cols=92 Identities=23% Similarity=0.405 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH---HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 000847 413 VEIQKLLDDQRAILDAKQQEFEL---ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEND 489 (1255)
Q Consensus 413 ~eIQkLldeh~a~L~~Kk~eFEl---ElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkd 489 (1255)
.|+.+++-.-++...+.-.+-=. .|.+-++++...+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=..
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~ 277 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRS 277 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444433333333333 344556777888888888888888899999999999999999988887776555
Q ss_pred HHHHHhhHHHHHHhH
Q 000847 490 LAARLKSVKEREKFV 504 (1255)
Q Consensus 490 l~~K~k~LKEkEksl 504 (1255)
...+++.++++=+..
T Consensus 278 ~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 278 AQDELSEVQEKYKQA 292 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544433
No 188
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.24 E-value=7.1e+02 Score=29.07 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=62.2
Q ss_pred HHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 000847 269 FYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAEL 346 (1255)
Q Consensus 269 ~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L 346 (1255)
+..+-..|.+-++.++.-+.-|..++.-++.=-..+.+....+.+.+.++..++++|+.++..+.+..+-+..|+..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777776666666666677778888899999999999999999999988888888888654
No 189
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=38.07 E-value=68 Score=35.52 Aligned_cols=133 Identities=26% Similarity=0.301 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCCcccccccccchh-hhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcCCCCccCCccccccccCc
Q 000847 960 EYAPSVDGHSYMDSKVEDVAEDSQQ-SELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDS 1038 (1255)
Q Consensus 960 ~~~~s~~d~s~~ds~~~~~~edsq~-s~~k~g~r~~grr~k~~v~RtrSvkavv~daK~~lges~e~~~~~~~~~~~~~s 1038 (1255)
-|+-|.-|-|.|--|+....||.-+ .....|+.++| -+.+|-.-.+.+.+-|+.|-.|...+ +++
T Consensus 79 AYdQSLPdfshIQmKvmgysED~rplLap~~gq~q~~-~sdgg~g~p~~~qawveaavvvHRgs-------------de~ 144 (224)
T PF15462_consen 79 AYDQSLPDFSHIQMKVMGYSEDPRPLLAPEPGQPQPG-ASDGGEGGPRDAQAWVEAAVVVHRGS-------------DED 144 (224)
T ss_pred hhhcCCCchhhheeeeeeccCCCCcccCCCcCCCccc-cCCCCCCCCcchhhhhhheeeeecCC-------------ccc
Confidence 4788888889999899888888877 56677888775 33444445678899998888777666 455
Q ss_pred CCCccccccccccccccCCCCCCcccccccCCCCCCCCcCccccCCCcccccccccccCCCCCcccccccccc
Q 000847 1039 QGISSHTQEASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHK 1111 (1255)
Q Consensus 1039 ~g~ss~~~k~~~~~rKR~r~~~s~~~~se~d~~dSEg~SdSvt~gg~rrKRrq~vap~~qtpge~rYnLRr~k 1111 (1255)
+|.-+.+.-.++-..=.+-...-..-.-+-|.+-|||.|-.-+.-.|.- .-+|. |-|-.-||.|-|--
T Consensus 145 ege~~~tqs~p~p~~~pqg~APLASfqddlD~gSsegsSp~pSPp~~ee----p~~p~-~~p~a~r~~ld~f~ 212 (224)
T PF15462_consen 145 EGERSPTQSRPGPPACPQGPAPLASFQDDLDMGSSEGSSPNPSPPEGEE----PHPPP-QEPWACRCQLDRFH 212 (224)
T ss_pred cCccccccCCCCCCCCCCCCcccccchhhccccccCCCCCCCCCCcccC----CCCCC-CCcccccCCccccc
Confidence 5555554422222211222222222223344567888888433331222 22333 67777899887754
No 190
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=38.05 E-value=3.4e+02 Score=28.83 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHhhccC-CCccccchhhh---hhhhhhHHhhhhHHhhHHhHHHHHHHHhhHH--------------HHHHHHHH
Q 000847 358 LIYLLYFICAYS-LPSFSYNVLLN---FFFQEADCLRSTVEMKEKRLLTIEEKLNARE--------------RVEIQKLL 419 (1255)
Q Consensus 358 ~~~~~~~~~~~~-~~~~~~~~~~~---~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE--------------~~eIQkLl 419 (1255)
|+++|+||+.|. +|..-.+..=. .|-..++.-+.....-+..+...+.+|..-. ....++++
T Consensus 35 nflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~ 114 (184)
T PRK13455 35 AFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAK 114 (184)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 420 DDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455 (1255)
Q Consensus 420 deh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 455 (1255)
+.-+......+...+.+++..+...-.+++..+..+
T Consensus 115 ~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~l 150 (184)
T PRK13455 115 ADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 191
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=37.97 E-value=1.3e+03 Score=32.23 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH------HHhHHHHhHHHHHH
Q 000847 570 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL------QHSAEERLKKEECA 643 (1255)
Q Consensus 570 LKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~------~~~E~erLK~Ek~~ 643 (1255)
|..|-..+=.-...+-++.+.++.+...++++--.+-+.+.++..+...|+..=..+..+ +..+-..+..+...
T Consensus 824 ~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e 903 (1294)
T KOG0962|consen 824 LRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKE 903 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445567788888888888888887777777777766666665443333211 11344556666667
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHH
Q 000847 644 MRDYVQREIEAIRLDKEAFEATMR 667 (1255)
Q Consensus 644 ~r~~~krelE~L~~ekEsF~~~M~ 667 (1255)
+...+......|...-++|..-|.
T Consensus 904 ~~~~~~~~~~~l~e~~s~~e~~k~ 927 (1294)
T KOG0962|consen 904 LLERIQPLKVELEEAQSEKEELKN 927 (1294)
T ss_pred hHhhhcchhhhHHHHHHHHHHHHH
Confidence 777777666666666666655444
No 192
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.83 E-value=7.6e+02 Score=29.34 Aligned_cols=248 Identities=20% Similarity=0.322 Sum_probs=119.2
Q ss_pred HHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000847 346 LVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAI 425 (1255)
Q Consensus 346 L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~ 425 (1255)
||...-.+||-|+ +||+--.+-.. --..+++++-..|+.||+.|. |+ ..|.+-|-.++-.
T Consensus 35 ls~~~~~~~l~y~-----~Lc~~rv~qmt------kty~Didavt~lLeEkerDLe-----la----A~iGqsLl~~N~~ 94 (306)
T PF04849_consen 35 LSPEQIEETLRYF-----LLCSDRVSQMT------KTYNDIDAVTRLLEEKERDLE-----LA----ARIGQSLLEQNQD 94 (306)
T ss_pred CCHHHHHHHHHHH-----Hhcccchhhhh------cchhhHHHHHHHHHHHhhhHH-----HH----HHHhHHHHHhccc
Confidence 4555555665554 66765443221 122379999999999999985 33 4688888888888
Q ss_pred HHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH--------H---HHH
Q 000847 426 LDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDL--------A---ARL 494 (1255)
Q Consensus 426 L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkEKEkdl--------~---~K~ 494 (1255)
|..+-...|.+|. +....+.+---+|+-+.+.+.---++-+.-. ....-.-++ . .-+
T Consensus 95 L~~~~~~le~~L~-----------~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~-~~~~~~~~~~~~~~~~~~~~~~~l 162 (306)
T PF04849_consen 95 LSERNEALEEQLG-----------AALEQVEQLRHELSMKDELLQIYSNDDEESE-PESSESTPLRRNESSLSSQKCIQL 162 (306)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhcCcHhhhcc-cccCCCccccccccccccccchhH
Confidence 8765555555553 3334444433344333333221111111000 000000000 0 001
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 000847 495 KSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI 574 (1255)
Q Consensus 495 k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEI 574 (1255)
.+|.+|=+.|..+-..|-.+-.+|..+. +..+++..++...| .+-.-+=...+..|+-+|-..-
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et--------------~~~EekEqqLv~dc--v~QL~~An~qia~LseELa~k~ 226 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTET--------------DTYEEKEQQLVLDC--VKQLSEANQQIASLSEELARKT 226 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH--------------hhccHHHHHHHHHH--HHHhhhcchhHHHHHHHHHHHH
Confidence 2222222222222222222222222111 12333333332222 1111222344555666666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HhHHHHHHHHHHHHHH
Q 000847 575 ETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE---RLKKEECAMRDYVQRE 651 (1255)
Q Consensus 575 e~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~e---rLK~Ek~~~r~~~kre 651 (1255)
+.++.|.+++ -.|=-....+++..+.++-+.+.+...+....+ .|..|-..+++.|..=
T Consensus 227 Ee~~rQQEEI------------------t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 227 EENRRQQEEI------------------TSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655543 233444566777788888888888887755543 4666667777777655
Q ss_pred HHHhhhcH
Q 000847 652 IEAIRLDK 659 (1255)
Q Consensus 652 lE~L~~ek 659 (1255)
...|.-..
T Consensus 289 ~~mL~EaQ 296 (306)
T PF04849_consen 289 MAMLHEAQ 296 (306)
T ss_pred HHHHHHHH
Confidence 54444333
No 193
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.70 E-value=4.9e+02 Score=27.10 Aligned_cols=51 Identities=25% Similarity=0.233 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 000847 503 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 555 (1255)
Q Consensus 503 sl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 555 (1255)
.+...-+.|+..+.+|..+ ....++.+++-++.=+.++-.++..-+.+|+-
T Consensus 59 ~~~~~~~~l~~~~~kl~~E--~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 59 ELASEVKELEAEKEKLKEE--ARKEAQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333344444444444322 22455667777777777777777776666654
No 194
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=37.46 E-value=40 Score=43.49 Aligned_cols=15 Identities=47% Similarity=0.459 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 000847 695 QEAELLNRRDKMEKE 709 (1255)
Q Consensus 695 LE~~~~~r~EE~E~~ 709 (1255)
+-++-++||++.|+.
T Consensus 992 a~~en~krRee~Ek~ 1006 (1102)
T KOG1924|consen 992 AVAENEKRREEEEKE 1006 (1102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666655543
No 195
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=37.19 E-value=7.5e+02 Score=29.08 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=11.5
Q ss_pred HHHHHHHHHH------HHHHHHhhhHHH
Q 000847 413 VEIQKLLDDQ------RAILDAKQQEFE 434 (1255)
Q Consensus 413 ~eIQkLldeh------~a~L~~Kk~eFE 434 (1255)
..++.|++.| .|.|.+|+-=+|
T Consensus 109 ~d~r~lm~~Qf~lvK~~aRl~ak~~WYe 136 (312)
T smart00787 109 PDVKLLMDKQFQLVKTFARLEAKKMWYE 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544 355666655444
No 196
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=37.15 E-value=1.1e+03 Score=31.02 Aligned_cols=231 Identities=23% Similarity=0.303 Sum_probs=121.9
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH---HH
Q 000847 494 LKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQS---QL 570 (1255)
Q Consensus 494 ~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~Lqs---eL 570 (1255)
.+.-|..+..|.-.=.+|+....+| |.++..++.++.+...+++-...+..+-...+ + .|++.... -|
T Consensus 522 i~~~k~qee~~~kqie~Lee~~~~L---rneles~~eel~~k~~Ev~~kl~ksEen~r~~---e---~e~~~k~kq~k~l 592 (786)
T PF05483_consen 522 INNSKKQEEKMLKQIENLEETNTQL---RNELESVKEELKQKGEEVKCKLDKSEENARSI---E---CEILKKEKQMKIL 592 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHH---H---HHHhhhHHHHHHH
Confidence 3444554444444444588888777 67777888888888877776655533221111 0 11111111 13
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 000847 571 KQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQR 650 (1255)
Q Consensus 571 KeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kr 650 (1255)
.-.+..+|.|-+--.+=.+.|+++-.-+ ..| +..|-+.++.---++.++. .|-+.+++--..|-+.|++
T Consensus 593 enk~~~LrKqvEnk~K~ieeLqqeNk~L-------KKk---~~aE~kq~~~~eikVn~L~-~E~e~~kk~~eE~~~~~~k 661 (786)
T PF05483_consen 593 ENKCNNLRKQVENKNKNIEELQQENKAL-------KKK---ITAESKQSNVYEIKVNKLQ-EELENLKKKHEEETDKYQK 661 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHH
Confidence 3445566666555555555555544333 222 3344444444444454544 7888899989999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000847 651 EIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQ---R-MNQEAELLNRRDKMEKELQERTRTFEEKRERVLN 726 (1255)
Q Consensus 651 elE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~Emq---k-reLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~ 726 (1255)
++++=+.--+..+.-.+-=+....+-|+.- .++++. | -++=+.|.+---.-++-+.||...+-..+.+|-+
T Consensus 662 eie~K~~~e~~L~~EveK~k~~a~EAvK~q-----~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E 736 (786)
T PF05483_consen 662 EIESKSISEEELLGEVEKAKLTADEAVKLQ-----EETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQE 736 (786)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999766555555544443333333322221 122221 0 1233344444445556666666666666666544
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 000847 727 DIAHLKEVAEGEIQEIKSERDQLE 750 (1255)
Q Consensus 727 ~In~lke~a~kE~Eev~~E~~rLe 750 (1255)
... .+....-|+-.++.+...|.
T Consensus 737 ~~s-~k~sLE~ELs~lk~el~slK 759 (786)
T PF05483_consen 737 QSS-HKASLELELSNLKNELSSLK 759 (786)
T ss_pred HHH-HHHHHHHHHHHHHhHHHHHH
Confidence 433 55555555555555554443
No 197
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.09 E-value=6.2e+02 Score=28.03 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 640 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 688 (1255)
Q Consensus 640 Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~ 688 (1255)
.-...++.|+.-++.|..-+..|+..|.. =...|..+..+|-+|+.++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999985 3444455666677776554
No 198
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.91 E-value=8.2e+02 Score=29.43 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=15.7
Q ss_pred hhHHhHhhhhccchhHHHhhhhhHHHHHHHhh
Q 000847 200 TDANTLLGGIEGKSLEVEEKFHAAEAKLAEVN 231 (1255)
Q Consensus 200 aeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~ 231 (1255)
..+.....-++....+++.+|..|+..+..--
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555443
No 199
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.22 E-value=7.6e+02 Score=28.83 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=90.2
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHH---------------HHHHHHHHHhhHHH---
Q 000847 438 EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKE---------------KENDLAARLKSVKE--- 499 (1255)
Q Consensus 438 E~kRKs~eeel~~K~~~~e~rEvei~h~Eekl~krEqaLe~k~~~lkE---------------KEkdl~~K~k~LKE--- 499 (1255)
-.++.++++++..=-..+.+-+.+|...++-|.+|..-|.++.|.+-. ==.||-+|+.++..
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~ 144 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVD 144 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666666667777777777766665422 11466666666543
Q ss_pred ----HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Q 000847 500 ----REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIE 575 (1255)
Q Consensus 500 ----kEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe 575 (1255)
-=+..+..++.|+..+..+....+.|.-+..+++.....|+.++....-..-.|+..+.. +..|+.
T Consensus 145 aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~----------~~~e~a 214 (265)
T COG3883 145 ADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS----------ALGEKA 214 (265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHH
Confidence 223456777888888888888888888888888888888888776655444444433322 222222
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 000847 576 TYRHQQELLLKEHEDLQQDRE 596 (1255)
Q Consensus 576 ~~R~Qke~LlkEae~Lk~eke 596 (1255)
-+-.|+..-.+.+...+.+-.
T Consensus 215 ~l~~qka~a~a~a~~~a~~~~ 235 (265)
T COG3883 215 ALEEQKALAEAAAAEAAKQEA 235 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 222555555555555544433
No 200
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.05 E-value=9.5e+02 Score=29.90 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=30.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 000847 722 ERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQE 765 (1255)
Q Consensus 722 ~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~ 765 (1255)
+..|..|+.|+.....-++++...+..++++...+...-..++.
T Consensus 307 e~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~ 350 (563)
T TIGR00634 307 EERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEA 350 (563)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34456677777777777888888888888777776655444433
No 201
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.86 E-value=4.5e+02 Score=29.20 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=8.1
Q ss_pred HHHhhhHHHHHHHHHh
Q 000847 426 LDAKQQEFELELEEKR 441 (1255)
Q Consensus 426 L~~Kk~eFElElE~kR 441 (1255)
+..+.-.+|.|++..+
T Consensus 91 ~~~rlp~le~el~~l~ 106 (206)
T PRK10884 91 LRTRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555444
No 202
>PRK10698 phage shock protein PspA; Provisional
Probab=35.86 E-value=6.6e+02 Score=28.00 Aligned_cols=176 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhHHHHHHHhccchhHHhhh--hcHH-HHHHHHHHHHHhHhhhhhcccceeeeccchhhhHHHHHHHHHH----HHHHHH
Q 000847 71 EDDWRRFREAGLLDEATMER--KDRE-ALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEE----TQEILK 143 (1255)
Q Consensus 71 ~~~w~r~~e~g~lde~s~~r--~d~~-aL~a~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e----~e~~lK 143 (1255)
+.+|+||....--+-.++-. -|+. .|--+|-.++..|.+-...+.-++-.+|...-+|+++...++. |+..|.
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HhhhhhhhHHHH---HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhh---------------------hccccc
Q 000847 144 -REQSAHLIAFSE---AEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTK---------------------LFSEKT 198 (1255)
Q Consensus 144 -REqaahl~AlsE---aeKREEnLkKALgiEKqCvadLEKAL~emr~E~AeiK---------------------~~sesK 198 (1255)
-+..---.||.+ +..+-..|+..+.....-+..|...++.|+..+.+.| ..+...
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~ 160 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred hhhHHhHhhhhccchhHHHhhhhh--------HHHHHHHhhccchHHHhHHHHhhhh
Q 000847 199 LTDANTLLGGIEGKSLEVEEKFHA--------AEAKLAEVNRKSSELEMKLQELESR 247 (1255)
Q Consensus 199 LaeA~aLv~~~eeKslEvE~Kl~a--------AeaklAEa~Rk~s~~erKL~evEaR 247 (1255)
...|.+..+.++.|..+.|+.--| -+..++.+ ..++.++..|..+-++
T Consensus 161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~l-e~~~~ve~ELa~LK~~ 216 (222)
T PRK10698 161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAEL-KADDEISEQLAALKAK 216 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHh-hccchHHHHHHHHHHH
No 203
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.29 E-value=5.8e+02 Score=27.47 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=27.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 000847 633 AEERLKKEECAMRDYVQREIEAIRLDKEA---FEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLN 701 (1255)
Q Consensus 633 E~erLK~Ek~~~r~~~krelE~L~~ekEs---F~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~ 701 (1255)
|.++|+.....+..+|.++-+.-+..... |.+....|+..|..++ ..++.+.+.|+..+.+
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v--------~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQV--------EQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhh
Confidence 44455555555555555543332222211 1233344444443333 3455555666655554
No 204
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=35.27 E-value=6.8e+02 Score=28.00 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhhhhcccceeeeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHH
Q 000847 96 LMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVA 175 (1255)
Q Consensus 96 L~a~iskLE~ElydYQynMGLLLiEkKEwtSk~eel~qa~~e~e~~lKREqaahl~AlsEaeKREEnLkKALgiEKqCva 175 (1255)
|...|..|-..|.+--..|..|=- ..-..-...|..++.+|+.||+ +.++| ++..-..+-..+..
T Consensus 92 L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~-----------emr~r--~f~~~~~~Ae~El~ 156 (264)
T PF06008_consen 92 LEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLE-----------EMRKR--DFTPQRQNAEDELK 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHH-----------HHHhc--cchhHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHH
Q 000847 176 DLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRER 255 (1255)
Q Consensus 176 dLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRer 255 (1255)
.-++-|..++..+....-....-.......+....-|..++..-|.-|.++..++++.+......|.++..+-..|+...
T Consensus 157 ~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 157 EAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHhHHHhHHHHHHHhHhhHHHHHHhh
Q 000847 256 LSLVTEREAHEAAFYKQREDLREWEKKL 283 (1255)
Q Consensus 256 lSf~~Erea~E~~~~~qRe~L~eweKkL 283 (1255)
-.+..=...-+..+..=..-|....+.+
T Consensus 237 ~~~~~~L~~a~~~L~~a~~ll~~~~~~~ 264 (264)
T PF06008_consen 237 NEVSETLKEAEDLLDQANDLLQEMQDSQ 264 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 205
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=34.92 E-value=7.5e+02 Score=28.40 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHH
Q 000847 567 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN 613 (1255)
Q Consensus 567 qseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~ 613 (1255)
+.-+..+...+..+...+.++...|..+...+..+.+.+...-..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~ 171 (423)
T TIGR01843 125 PELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALR 171 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555544444333333
No 206
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.57 E-value=44 Score=44.80 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhc
Q 000847 792 KREKERFLEFVEKHT 806 (1255)
Q Consensus 792 ~~ERe~fl~~vEklK 806 (1255)
-++++.-++||.++-
T Consensus 1142 dKDaeah~efide~d 1156 (3015)
T KOG0943|consen 1142 DKDAEAHAEFIDELD 1156 (3015)
T ss_pred ccchhhhhhhhhhhh
Confidence 456666666666653
No 207
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.95 E-value=9e+02 Score=32.14 Aligned_cols=85 Identities=18% Similarity=0.309 Sum_probs=47.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 604 VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK 683 (1255)
Q Consensus 604 ~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad 683 (1255)
+|.-|.++|-|..+...+|..+|.+.++.=...|++ .+.+|.-+...|+++=++-+.+|++=+..| ...|...
T Consensus 452 ~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q~kL---e~sekEN 524 (861)
T PF15254_consen 452 LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQFKL---EASEKEN 524 (861)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHhhh
Confidence 344455555555555555555555554443333333 344566667778888888888887544333 3355556
Q ss_pred HHHHHHHhhhhH
Q 000847 684 MLEEFEMQRMNQ 695 (1255)
Q Consensus 684 ~l~d~EmqkreL 695 (1255)
++..|.++-|+-
T Consensus 525 ~iL~itlrQrDa 536 (861)
T PF15254_consen 525 QILGITLRQRDA 536 (861)
T ss_pred hHhhhHHHHHHH
Confidence 666666655543
No 208
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.78 E-value=3.8e+02 Score=28.79 Aligned_cols=75 Identities=31% Similarity=0.357 Sum_probs=19.5
Q ss_pred HhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHH
Q 000847 263 EAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERED 337 (1255)
Q Consensus 263 ea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~ked 337 (1255)
.+.+..+...|++|.+-.|.--+...+|...-..|...+..+.+....+...+.++..++.+|..-...|+++..
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777888888888888888888888888888888777777777777777777777666666655555544443
No 209
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.67 E-value=1.1e+03 Score=29.74 Aligned_cols=355 Identities=22% Similarity=0.304 Sum_probs=170.8
Q ss_pred HHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHH-HhHhhHHHHHHhhchhh-hhhHHHHHhhhhHhhhhh-----hhHH
Q 000847 237 LEMKLQELESRESVIKRERLSLVTEREAHEAAFY-KQREDLREWEKKLQIGD-ERLSELRRTLNQREVKAN-----ENER 309 (1255)
Q Consensus 237 ~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~-~qRe~L~eweKkLqe~e-erL~~~qr~LNqREe~~n-----E~~~ 309 (1255)
....+.+++.|-..|...-+...-..-..= .+. .--+.+..|+++-++-- ..|.+....|++=|+.++ ...+
T Consensus 23 ~~k~i~~Le~~k~~l~~~pv~~el~kvk~l-~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~ 101 (560)
T PF06160_consen 23 YYKEIDELEERKNELMNLPVADELSKVKKL-NLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQ 101 (560)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHH
Confidence 345566777777776655444432211110 111 11245677887777666 567777777776666532 2334
Q ss_pred HHHHhhhhHHHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhh-hhhh-hh
Q 000847 310 ILKQKERDLEELEKKIDLSSSKLKE-REDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLN-FFFQ-EA 386 (1255)
Q Consensus 310 ~lk~kekeLEe~~kkie~~~~~Lk~-keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-e~ 386 (1255)
.++..+..|+.+...|......|.. .+.+-.+|.+-..++++ |..+ +-.+.=+ +-|. .+
T Consensus 102 ~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~---y~~l---------------rk~ll~~~~~~G~a~ 163 (560)
T PF06160_consen 102 AIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEK---YREL---------------RKELLAHSFSYGPAI 163 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---------------HHHHHHhhhhhchhH
Confidence 4445555555555555555555555 23345567776777777 1111 1111111 2222 45
Q ss_pred HHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHH----------HHHHHHHHHh
Q 000847 387 DCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEE----------EMRSKISALD 456 (1255)
Q Consensus 387 ~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~ee----------el~~K~~~~e 456 (1255)
+.+...|..-|.....|++--++=.-.+-..+|..- ......|+.-|+..=..+.+ +|+.-...+.
T Consensus 164 ~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l----~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~ 239 (560)
T PF06160_consen 164 EELEKQLENIEEEFSEFEELTENGDYLEAREILEKL----KEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREME 239 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 667777777777777777655543333333333222 22222333333322222211 2223333333
Q ss_pred hhhhhhhh--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH---HHH
Q 000847 457 QQEFEISH--REEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQIL---KVE 531 (1255)
Q Consensus 457 ~rEvei~h--~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~l---K~e 531 (1255)
..-..+.| .+..+..-...|+.-...|+.. .|++-+..+......|..--..|.++-+.-... -..
T Consensus 240 ~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l---------~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~ 310 (560)
T PF06160_consen 240 EEGYYLEHLDIEEEIEQIEEQLEEALALLKNL---------ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKE 310 (560)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444 2222222222222222222111 233444444444445554444554443322222 222
Q ss_pred HHHHHhHHHHHHHHHHHHH----hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 000847 532 IDQIESENAQQELQIQEEC----QKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 607 (1255)
Q Consensus 532 lEK~~a~~e~q~~qi~ee~----e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDE 607 (1255)
+......+.++-.++..+. ++--++..|-..+ ..|..+|..+..+-..+.....+=..---....+|+.+.+
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~----~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~ 386 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV----RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEE 386 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 2222222233333333333 3334455444443 4555666667777777766666655555666778888888
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 000847 608 KRDEINKEQEKIADEKKKLE 627 (1255)
Q Consensus 608 KR~el~KE~~~I~eEre~le 627 (1255)
.=++|.+++..+.+.=..|.
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888875444443
No 210
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=33.31 E-value=6.9e+02 Score=27.46 Aligned_cols=128 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHH
Q 000847 494 LKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKL-KINEEEKSELLRLQSQLKQ 572 (1255)
Q Consensus 494 ~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~L-kiteeEr~E~l~LqseLKe 572 (1255)
...|+..-+.+....|.++..-..+++++... ...++|++...+....++...+.+. .++..+-.-+-.--.+..+
T Consensus 88 ~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~---~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~ 164 (236)
T cd07651 88 EEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQ---EKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQS 164 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 000847 573 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 647 (1255)
Q Consensus 573 EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 647 (1255)
++...+..-.....+....+. .|+.+|..+ +..|+.-|++||.-=+..|..|
T Consensus 165 ~~~~~~~~Y~~~v~~~~~~~~---~~~~~~~~~--------------------~~~~Q~lEe~Ri~~lk~~l~~~ 216 (236)
T cd07651 165 SINSSRRDYQNAVKALRELNE---IWNREWKAA--------------------LDDFQDLEEERIQFLKSNCWTF 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
No 211
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=33.24 E-value=5.4e+02 Score=26.22 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000847 463 SHREEKLERREQALDKKSDRVKEKENDLA 491 (1255)
Q Consensus 463 ~h~Eekl~krEqaLe~k~~~lkEKEkdl~ 491 (1255)
...+..+..--..|+.+.....+-+..++
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555544
No 212
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=32.86 E-value=4.7e+02 Score=27.60 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhccCCCccccchhhh---hhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHH--------------HHHH
Q 000847 354 FLAYLIYLLYFICAYSLPSFSYNVLLN---FFFQEADCLRSTVEMKEKRLLTIEEKLNARER--------------VEIQ 416 (1255)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~--------------~eIQ 416 (1255)
|..-+.++||||+.|.++..-.+..=. .|...++.-+.....-+..+...+.+|..-.. ...+
T Consensus 23 ~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~ 102 (175)
T PRK14472 23 WTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRA 102 (175)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 417 KLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455 (1255)
Q Consensus 417 kLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 455 (1255)
.++++-+...+..+.....+++..+...-.+++..+..+
T Consensus 103 ~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~l 141 (175)
T PRK14472 103 EITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADL 141 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 213
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.80 E-value=1.5e+03 Score=31.21 Aligned_cols=207 Identities=20% Similarity=0.251 Sum_probs=122.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhh----hhhhhccccchhhHHhHhhh------
Q 000847 139 QEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEER----AQTKLFSEKTLTDANTLLGG------ 208 (1255)
Q Consensus 139 e~~lKREqaahl~AlsEaeKREEnLkKALgiEKqCvadLEKAL~emr~E~----AeiK~~sesKLaeA~aLv~~------ 208 (1255)
+..++|..++|- +.+...+=.+|.-.++-..+-|..||+-..+|.... ...--+-+.++..+++.|.-
T Consensus 241 ~~~~~~~~~~~~--i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~ 318 (1174)
T KOG0933|consen 241 QAEEKRKNSAHE--IEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLN 318 (1174)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 366777777775 457777777888888888888888888888776522 11112233344444443333
Q ss_pred --------hccchhHHHhhhhhH-------HHHHHHh-------hccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHH
Q 000847 209 --------IEGKSLEVEEKFHAA-------EAKLAEV-------NRKSSELEMKLQELESRESVIKRERLSLVTEREAHE 266 (1255)
Q Consensus 209 --------~eeKslEvE~Kl~aA-------eaklAEa-------~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E 266 (1255)
-++|+-++...+..- ++..+.+ -+.++...--|...+--=..|.+=..|-..+--.++
T Consensus 319 ~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~ 398 (1174)
T KOG0933|consen 319 LKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLE 398 (1174)
T ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHH
Confidence 233333322222111 1111110 000111111111111111122222233333445778
Q ss_pred HHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhh------hHHHHH
Q 000847 267 AAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKE------REDEIN 340 (1255)
Q Consensus 267 ~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~------keddi~ 340 (1255)
.++..-+.++++....+.+..-+|--.+.-|-+|+-...+.+.....-.++|+..+..+|..+..|+. .++.+.
T Consensus 399 ~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~ 478 (1174)
T KOG0933|consen 399 DQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALK 478 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 88888889999999999999999988888999999999999998888899999999999988888876 333444
Q ss_pred HHHHHHH
Q 000847 341 SRLAELV 347 (1255)
Q Consensus 341 ~rla~L~ 347 (1255)
.|.+.|.
T Consensus 479 q~~~~l~ 485 (1174)
T KOG0933|consen 479 QRRAKLH 485 (1174)
T ss_pred HHHHHHH
Confidence 5554443
No 214
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=32.36 E-value=2.7e+02 Score=27.12 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHH
Q 000847 415 IQKLLDDQRAILDAKQQEFELELEEKRKSIEEE 447 (1255)
Q Consensus 415 IQkLldeh~a~L~~Kk~eFElElE~kRKs~eee 447 (1255)
+++++++++..|..-+.+-..-++.-+...+..
T Consensus 49 a~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~ 81 (132)
T PF00430_consen 49 AEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKE 81 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333333333333333
No 215
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=32.20 E-value=6.6e+02 Score=26.95 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 411 ERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455 (1255)
Q Consensus 411 E~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 455 (1255)
-+.+.++++.+++..|..-+.+-..-++.-++..+.+....+...
T Consensus 77 ~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 77 LKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766666666666655555555444444333
No 216
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=31.90 E-value=1.4e+03 Score=30.74 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=37.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 000847 496 SVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 545 (1255)
Q Consensus 496 ~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~q 545 (1255)
-++.++-.+-+-.+....+++-+++-+.-|.+.|.++|++.+.-+++..+
T Consensus 544 ~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~ 593 (988)
T KOG2072|consen 544 RAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQ 593 (988)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34555666666677777788888888888888888888888777776655
No 217
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.76 E-value=1.1e+03 Score=29.38 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHH
Q 000847 664 ATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVA---EGEIQ 740 (1255)
Q Consensus 664 ~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a---~kE~E 740 (1255)
..|-..+.+...++-.-|+++.--++-+...+++.+.++.++.=..+.+--+.|+.....+...++.+-.++ .+|++
T Consensus 38 ~~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~~~~q~e~~~~~~~~~~N~e~dke~~ 117 (438)
T COG4487 38 SRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELE 117 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHH--HHHHHhhHhHHHHHHHHHHHHHHHHh
Q 000847 741 EIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD--ILCRRLYGDREQFKREKERFLEFVEK 804 (1255)
Q Consensus 741 ev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~--~ls~KLk~qRE~~~~ERe~fl~~vEk 804 (1255)
-+..++..+..|-.+.-.+.-.-.+..-+-.++-..|. + -.|++.. |-.+|..|..+++.
T Consensus 118 ~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~-ekK~e~s---Le~eR~k~~~ql~~ 179 (438)
T COG4487 118 LLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFEN-EKKLEES---LELEREKFEEQLHE 179 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHhh---HHHHHHHHHHHHHH
No 218
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.38 E-value=1.1e+03 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000847 564 LRLQSQLKQQIETYRHQQELLLKEHEDLQQD 594 (1255)
Q Consensus 564 l~LqseLKeEIe~~R~Qke~LlkEae~Lk~e 594 (1255)
......+++|+..+|.....|....|+||.+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777777776666666654
No 219
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.37 E-value=1.5e+03 Score=30.53 Aligned_cols=336 Identities=20% Similarity=0.249 Sum_probs=154.3
Q ss_pred hhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhH
Q 000847 257 SLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERE 336 (1255)
Q Consensus 257 Sf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~ke 336 (1255)
+.+++....+.+++--+.++.---+.|+..-+.|.+...-+|+.=+.+++--+.+..|-+.+.+.-..-|.....+.+-.
T Consensus 145 ~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q 224 (1265)
T KOG0976|consen 145 NLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQ 224 (1265)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34455555666666666666666667777777777777777777666655544444555555554433332222221111
Q ss_pred ---HHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHH
Q 000847 337 ---DEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERV 413 (1255)
Q Consensus 337 ---ddi~~rla~L~~kEk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~ 413 (1255)
.+|..+.-.|+..=. =+..++..+-+-|..--.+ .+.+++-.
T Consensus 225 ~~tq~vl~ev~QLss~~q---------------------------------~ltp~rk~~s~i~E~d~~l--q~sak~ie 269 (1265)
T KOG0976|consen 225 ENTQKVLKEVMQLSSQKQ---------------------------------TLTPLRKTCSMIEEQDMDL--QASAKEIE 269 (1265)
T ss_pred HHHHHHHHHHHHHHHhHh---------------------------------hhhhHhhhhHHHHHHHHHH--HHHHHHHH
Confidence 122233333332222 1122222222222111111 12333333
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhh--hhhhhHHHHHHHHH-----HHH---HhhhHH
Q 000847 414 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEF--EISHREEKLERREQ-----ALD---KKSDRV 483 (1255)
Q Consensus 414 eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEv--ei~h~Eekl~krEq-----aLe---~k~~~l 483 (1255)
|--.-+.--+..|..-+.+||-=.-++..-++++-+..-++.---|. .+-|.|-+-.+|+. +|- .+.+.+
T Consensus 270 E~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egf 349 (1265)
T KOG0976|consen 270 EKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGF 349 (1265)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 33333444455555555555554444444454444444443322221 12222322222221 111 122233
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 000847 484 KEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLI-------ADKESLQILKVEIDQIESENAQQELQIQEECQKLKIN 556 (1255)
Q Consensus 484 kEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~-------~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~Lkit 556 (1255)
.+|-+||+-|-.-+-.-=.+|.-.-+..+.+++-|+ ..-+++.+--.-++..+..-+.-+-.+.++.++|-.|
T Consensus 350 ddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~m 429 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLM 429 (1265)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 333333333332222222223222222222322222 1222222222334445555555566677788888888
Q ss_pred HHHHHHHHHHHH---HHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 000847 557 EEEKSELLRLQS---QLKQ--------QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKK 625 (1255)
Q Consensus 557 eeEr~E~l~Lqs---eLKe--------EIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~ 625 (1255)
..+++.+----+ -||+ -|+.|--.-..|.+=.+.|..+| |.|-|.+.| ++++.+++++|..-+|.
T Consensus 430 gthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qr-KVeqe~eml---Kaen~rqakkiefmkEe 505 (1265)
T KOG0976|consen 430 GTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQR-KVEQEYEML---KAENERQAKKIEFMKEE 505 (1265)
T ss_pred hHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhc-chHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 887764321100 1222 24444444444444444444333 567776665 68999999999988887
Q ss_pred HHHHHH
Q 000847 626 LEKLQH 631 (1255)
Q Consensus 626 lek~~~ 631 (1255)
|-+.+.
T Consensus 506 iQethl 511 (1265)
T KOG0976|consen 506 IQETHL 511 (1265)
T ss_pred HHHHHH
Confidence 776654
No 220
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.23 E-value=5.2e+02 Score=25.12 Aligned_cols=65 Identities=28% Similarity=0.498 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 000847 563 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 642 (1255)
Q Consensus 563 ~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~ 642 (1255)
|-.|+.+.++-||++- +|.-|+++|| ||...|+.|.-.....|++|+ .|-+.||+|-.
T Consensus 6 ~ekLE~KiqqAvdTI~----LLQmEieELK--------------Eknn~l~~e~q~~q~~reaL~----~eneqlk~e~~ 63 (79)
T COG3074 6 FEKLEAKVQQAIDTIT----LLQMEIEELK--------------EKNNSLSQEVQNAQHQREALE----RENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHH--------------HHhhHhHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3467888999999874 4555666554 667778888888888888776 46677888777
Q ss_pred HHHHHHH
Q 000847 643 AMRDYVQ 649 (1255)
Q Consensus 643 ~~r~~~k 649 (1255)
+-++.+.
T Consensus 64 ~WQerlr 70 (79)
T COG3074 64 GWQERLR 70 (79)
T ss_pred HHHHHHH
Confidence 7666554
No 221
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=30.07 E-value=1.3e+03 Score=29.85 Aligned_cols=205 Identities=18% Similarity=0.233 Sum_probs=106.9
Q ss_pred hhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHH-HHHHHhhhhhhhh
Q 000847 385 EADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRS-KISALDQQEFEIS 463 (1255)
Q Consensus 385 e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~-K~~~~e~rEvei~ 463 (1255)
|...++..|+..+.+|..+..+ ++.|++|- -+.++.+..++..-+-.-+..+. .-..|-.++..+.
T Consensus 122 e~~~lk~~lee~~~el~~~k~q-----q~~v~~l~--------e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~ 188 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQ-----QVTVRNLK--------ERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLK 188 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhh-----HHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666555554432 34444442 22333333333333222222222 2256777777777
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH-HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH
Q 000847 464 HREEKLERREQALDKKSDRVKEKENDLAARLKSVKER-EKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQ 542 (1255)
Q Consensus 464 h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEk-Eksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q 542 (1255)
.++..+.++-..|+++...+...-.+-...+..++-. ++..-+.--.+.+.-..|......|.-+..+++.++..+
T Consensus 189 ~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql--- 265 (629)
T KOG0963|consen 189 DEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL--- 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 7777777777777777777776677777777777766 554544444455555556666556655555555554443
Q ss_pred HHHHHHHHhhhhccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Q 000847 543 ELQIQEECQKLKINEEEKSEL--LRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD 606 (1255)
Q Consensus 543 ~~qi~ee~e~LkiteeEr~E~--l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LD 606 (1255)
....+.+..=++..-+-..+ ..+.+...+=...|-+-+..+.+|.+..+.+....|++-...+
T Consensus 266 -~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 266 -AKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKI 330 (629)
T ss_pred -HhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333222221 1122222222223333445677777777777777777654443
No 222
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=29.83 E-value=2.6e+02 Score=31.79 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=13.0
Q ss_pred HHHhhccccchhhhhh
Q 000847 801 FVEKHTSCKNCGEMMR 816 (1255)
Q Consensus 801 ~vEklK~ckncge~~~ 816 (1255)
+=.++..|.-||-+++
T Consensus 186 ~~qkl~VCeVCGA~Ls 201 (254)
T PF03194_consen 186 QQQKLEVCEVCGAFLS 201 (254)
T ss_pred cccCccchhhhhhHHh
Confidence 4467899999997776
No 223
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.83 E-value=1.8e+03 Score=31.17 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 000847 588 HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 651 (1255)
Q Consensus 588 ae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 651 (1255)
+-..-++...|+.=-|.|.-|++....+|+.|...=..... .-.+-++.-..++.||+.-
T Consensus 1614 ~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~----~A~~a~q~~~~lq~~~~~~ 1673 (1758)
T KOG0994|consen 1614 ATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKE----QALSAEQGLEILQKYYELV 1673 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33455677778888888888888888888777644333222 1222333333566666543
No 224
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.83 E-value=4.8e+02 Score=24.69 Aligned_cols=65 Identities=31% Similarity=0.403 Sum_probs=45.1
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 000847 533 DQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 607 (1255)
Q Consensus 533 EK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDE 607 (1255)
++..++=.++..++.+|=++ |+.-+.++-.-|.++|.+-..+.+....|+...+..+.+-+.|-+
T Consensus 4 ~~~l~EKDe~Ia~L~eEGek----------LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEK----------LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555444444 445567788889999999999999999998888888877776654
No 225
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.79 E-value=5.5e+02 Score=25.25 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000847 572 QQIETYRHQQELLLKEHE 589 (1255)
Q Consensus 572 eEIe~~R~Qke~LlkEae 589 (1255)
.+|+.++.....+.....
T Consensus 88 ~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334433333333333
No 226
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=29.71 E-value=7.1e+02 Score=26.53 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHH--------------------
Q 000847 352 VGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARE-------------------- 411 (1255)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE-------------------- 411 (1255)
+.|+.-+.+|+||+ |+...+.+-.=-......|+.-++-....+..+..-+
T Consensus 32 Inflill~lL~~fl---------~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 102 (184)
T CHL00019 32 INLSVVLGVLIYFG---------KGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSE 102 (184)
T ss_pred HHHHHHHHHHHHHh---------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 412 -RVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455 (1255)
Q Consensus 412 -~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 455 (1255)
..+.+.++++-+...+..+.....+++..+...-.+|+..+..+
T Consensus 103 ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~l 147 (184)
T CHL00019 103 IEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQL 147 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 227
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=29.36 E-value=8.7e+02 Score=27.41 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 682 RKMLEEFEMQRMNQ--------EAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEK 753 (1255)
Q Consensus 682 ad~l~d~EmqkreL--------E~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr 753 (1255)
+++.+.|+.+.+.+ -.-|+++.|+.-+++..=++.|..+..+ ...+|+....++.++.+-.
T Consensus 74 ~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~-----------~~~~l~K~~sel~Kl~KKs 142 (223)
T cd07605 74 VDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQ-----------KREDLDKARSELKKLQKKS 142 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh--hHhHHHHHHHHHHHHHHHHhh
Q 000847 754 HEVKVNREKLQEQQLGMRKDIDELDILCRRL--YGDREQFKREKERFLEFVEKH 805 (1255)
Q Consensus 754 ~Ei~~~ke~le~q~~em~kdIeeL~~ls~KL--k~qRE~~~~ERe~fl~~vEkl 805 (1255)
+-- ++.+........-.+|......-+.+ ...|+.+.-||.||.-||+.+
T Consensus 143 ~~~--~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~ 194 (223)
T cd07605 143 QKS--GTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKH 194 (223)
T ss_pred ccc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 228
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=28.95 E-value=5.5e+02 Score=25.03 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=38.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcH----HHHHHHHHHHHHHHHHHHHH
Q 000847 604 VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK----EAFEATMRHEQLVLSEKAKN 679 (1255)
Q Consensus 604 ~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek----EsF~~~M~hE~s~~~eK~q~ 679 (1255)
.||+++..+..........+.........=...|..=+......+..-.+.....+ ........+........|.+
T Consensus 27 ~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~ 106 (132)
T PF00430_consen 27 FLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQ 106 (132)
T ss_dssp HCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665555544444444333332222222222211111 22333333444445555555
Q ss_pred HHHHHHHHHHHh
Q 000847 680 DRRKMLEEFEMQ 691 (1255)
Q Consensus 680 Erad~l~d~Emq 691 (1255)
++.+++.++..+
T Consensus 107 e~~~a~~~l~~~ 118 (132)
T PF00430_consen 107 EKEKAKKELRQE 118 (132)
T ss_dssp HHHHHHHHHT--
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 229
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.95 E-value=6.1e+02 Score=29.68 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 000847 466 EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 545 (1255)
Q Consensus 466 Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~q 545 (1255)
...|..-...|..+--.|.++.++.+..+..+...-............+...+.....++...+.++++-++...-....
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~ 93 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEE 93 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555544444322111111222223333444445555666666666666555555555
Q ss_pred HHHHHhhh
Q 000847 546 IQEECQKL 553 (1255)
Q Consensus 546 i~ee~e~L 553 (1255)
...+-.+|
T Consensus 94 A~~al~~l 101 (344)
T PF12777_consen 94 AQEALKSL 101 (344)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHhC
Confidence 55444444
No 230
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=28.54 E-value=6.5e+02 Score=26.20 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=7.4
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 000847 472 REQALDKKSDRVKEKENDLA 491 (1255)
Q Consensus 472 rEqaLe~k~~~lkEKEkdl~ 491 (1255)
+..+++.-...+.+.--++.
T Consensus 131 k~~a~~~l~~~v~~lA~~ia 150 (156)
T CHL00118 131 KEKALKSLEEQVDTLSDQIE 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 231
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.48 E-value=8.9e+02 Score=26.95 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000847 561 SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 605 (1255)
Q Consensus 561 ~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~L 605 (1255)
........+..+.|+.+-.|+..|..+.+.|..+.+..+..=..+
T Consensus 31 ~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 31 QQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777777777777777777766666655533333
No 232
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=27.34 E-value=1.1e+03 Score=27.89 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=32.1
Q ss_pred hhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchH
Q 000847 191 TKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSE 236 (1255)
Q Consensus 191 iK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~ 236 (1255)
+....+.|...+.....-+++..-++..+|.+|+..+..--+++.-
T Consensus 158 ~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 158 IDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344455666677777777788888888888888877776666543
No 233
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=27.26 E-value=9e+02 Score=26.91 Aligned_cols=158 Identities=22% Similarity=0.307 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 000847 563 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 642 (1255)
Q Consensus 563 ~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~ 642 (1255)
+..+...|+.++..=|...+.... .++..-.+.++.-+.=-.+|.+..+-+.. .|+.-+.+-.+++.+...
T Consensus 14 ~~~f~~~le~e~~~Rr~~ee~r~~---~i~e~i~~Le~~l~~E~k~R~E~~~~lq~------~~e~~i~~~~~~v~~~~~ 84 (247)
T PF06705_consen 14 FSGFESDLENEKRQRREQEEQRFQ---DIKEQIQKLEKALEAEVKRRVESNKKLQS------KFEEQINNMQERVENQIS 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 455667777777666666555544 34445555555554444555555444433 344445555566666666
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 643 AMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRE 722 (1255)
Q Consensus 643 ~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~ 722 (1255)
...+.++.-+++|...=..... .++.++.+...+|+-....|...|..=.+.++.+-..|..-=..=..
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~~-----------~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k 153 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALEE-----------EIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILK 153 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665544444444 44455555555666666666666666666666665555444333333
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 000847 723 RVLNDIAHLKEVAEGEIQ 740 (1255)
Q Consensus 723 ~EL~~In~lke~a~kE~E 740 (1255)
+--+.++++.+.+..|.-
T Consensus 154 rl~e~~~~l~~~i~~Ek~ 171 (247)
T PF06705_consen 154 RLEEEENRLQEKIEKEKN 171 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444455554444433
No 234
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=27.25 E-value=4e+02 Score=25.56 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=40.0
Q ss_pred hhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 000847 288 ERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICA 367 (1255)
Q Consensus 288 erL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~rla~L~~kEk~~~~~~~~~~~~~~~~ 367 (1255)
+.|....+.+++--++-..+-..|.+...-|..+......-...|+.- ..+-..+..=...++ +++...+++|++.|+
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s-~~ll~~l~r~~~~D~-~li~~~~~~f~~~v~ 85 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKS-RKLLKKLERRDKTDR-ILIFFAFLFFLLVVL 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 345555666666666655555555555555555555554444444211 111122223334444 444455556666666
Q ss_pred cCC
Q 000847 368 YSL 370 (1255)
Q Consensus 368 ~~~ 370 (1255)
|.+
T Consensus 86 yI~ 88 (92)
T PF03908_consen 86 YIL 88 (92)
T ss_pred HHh
Confidence 643
No 235
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.22 E-value=3.7e+02 Score=28.65 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000847 568 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 602 (1255)
Q Consensus 568 seLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EW 602 (1255)
.++++||+++..+-....+|.+.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566666666666667788888888888887774
No 236
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=27.09 E-value=6.6e+02 Score=26.52 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhhccCCCccccchhhh---hhhhhhHHhhhhHHhhHHhHHHHHHHHhhHH--------------HHH
Q 000847 352 VGFLAYLIYLLYFICAYSLPSFSYNVLLN---FFFQEADCLRSTVEMKEKRLLTIEEKLNARE--------------RVE 414 (1255)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE--------------~~e 414 (1255)
..|..-+.++|||++.|.+..--.+..=. .|...++.-+.....-+..+...+.+|..-. ...
T Consensus 19 ~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~ 98 (173)
T PRK13460 19 VVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKL 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 415 IQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455 (1255)
Q Consensus 415 IQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 455 (1255)
.+..+++=+...+..+.....+++..+..+-.+|+..+..+
T Consensus 99 ~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~l 139 (173)
T PRK13460 99 KNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEM 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 237
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.97 E-value=7.5e+02 Score=25.92 Aligned_cols=46 Identities=30% Similarity=0.533 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHH
Q 000847 567 QSQLKQQIETYR---HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEI 612 (1255)
Q Consensus 567 qseLKeEIe~~R---~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el 612 (1255)
...|++=.+++| ..-+.+..=+..|..++..+|.-++.|+.|-.++
T Consensus 93 e~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 93 EKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 444444444444 2233333344455666666666666666665544
No 238
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=26.19 E-value=5.1e+02 Score=26.91 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCccccchhhh-------hhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHH--------------HHHHH
Q 000847 360 YLLYFICAYSLPSFSYNVLLN-------FFFQEADCLRSTVEMKEKRLLTIEEKLNARERV--------------EIQKL 418 (1255)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~-------~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~--------------eIQkL 418 (1255)
++.|+|..|.|-+|-|....+ .|...++.-+..-+.-+.-+...+.+|..-... .+..+
T Consensus 15 ~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~ 94 (164)
T PRK14471 15 TILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADA 94 (164)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 419 LDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455 (1255)
Q Consensus 419 ldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 455 (1255)
++.-+...+..+..-..+++..+..+-.+|++.+..+
T Consensus 95 ~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~l 131 (164)
T PRK14471 95 KEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANL 131 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 239
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.95 E-value=2e+03 Score=30.52 Aligned_cols=126 Identities=20% Similarity=0.193 Sum_probs=76.5
Q ss_pred hhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHH----HHHHHhhhHhHHHhHHHHHHHhHhhHHHHHH
Q 000847 206 LGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESV----IKRERLSLVTEREAHEAAFYKQREDLREWEK 281 (1255)
Q Consensus 206 v~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~----LrRerlSf~~Erea~E~~~~~qRe~L~eweK 281 (1255)
+..+++....+..|...++.....+++......-.+.+++-.... |-....+|.-+-++.-+++.+-++.|-.|.+
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~ 493 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK 493 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 333334444445555556666666666655555555444444443 3445677777777777888888888888888
Q ss_pred hhchhhhhhHHHHHhh---hhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHH
Q 000847 282 KLQIGDERLSELRRTL---NQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINS 341 (1255)
Q Consensus 282 kLqe~eerL~~~qr~L---NqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~ 341 (1255)
++.+....+--.+.-| -+|.+ .-.+.+++++++|..+...+++..+.+..
T Consensus 494 ~~n~~~~e~~vaesel~~L~~~~~----------~~~~~~e~lk~~L~~~~~~~~e~~~~l~~ 546 (1293)
T KOG0996|consen 494 QVNEARSELDVAESELDILLSRHE----------TGLKKVEELKGKLLASSESLKEKKTELDD 546 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877666555544333 33333 23456777888888777777776665543
No 240
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.88 E-value=4.6e+02 Score=33.07 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=54.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Q 000847 496 SVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIE 575 (1255)
Q Consensus 496 ~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe 575 (1255)
..++-++.++..+.........|- .++++..+|..++++....=.--..|. .-..++-.|+.+.+...+
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~----------~~~~e~d~lk~e~~~~~~ 233 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQ----------KIKEEFDKLKKEGKADKQ 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555 466777777777766652111111111 112356667777777777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 000847 576 TYRHQQELLLKEHEDLQQDREKFE 599 (1255)
Q Consensus 576 ~~R~Qke~LlkEae~Lk~ekekFE 599 (1255)
.++.=+..|..+.+.++++-..++
T Consensus 234 ~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 234 KIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777777777777777777665554
No 241
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=25.81 E-value=4.9e+02 Score=29.33 Aligned_cols=107 Identities=28% Similarity=0.333 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHh
Q 000847 177 LEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERL 256 (1255)
Q Consensus 177 LEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerl 256 (1255)
|+-++++|+.++.+++-+...-++....+-..+..=...++.=-+-|..-+.-.+ +-=||+-. -++-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al--~~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREAL--EEKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHH--HHHH
Confidence 6778888888888877776666666666555544444443333333333332222 22222222 2345
Q ss_pred hhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHh
Q 000847 257 SLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRT 296 (1255)
Q Consensus 257 Sf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~ 296 (1255)
++..-+.+|+..+..+++.+-..++.+...+..+.+.+..
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777777666666665543
No 242
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=25.75 E-value=9.7e+02 Score=26.79 Aligned_cols=53 Identities=26% Similarity=0.399 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhHHhHHHHHHH
Q 000847 563 LLRLQSQLKQQIE-TYRHQQELLLKE-HEDLQ-QDREKFEKEWEVLDEKRDEINKE 615 (1255)
Q Consensus 563 ~l~LqseLKeEIe-~~R~Qke~LlkE-ae~Lk-~ekekFE~EWE~LDEKR~el~KE 615 (1255)
+..+..-|-+.|. .+-.+.+.++++ .-.-+ .-|.+|++.|+..|-+++.+.++
T Consensus 75 l~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~ 130 (215)
T cd07604 75 LAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKE 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444442 334445566776 55555 88899999999998887776654
No 243
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.35 E-value=1.3e+03 Score=27.94 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=18.7
Q ss_pred hhhhhhHHhhhhHHhhHHhHHHHHHH
Q 000847 381 FFFQEADCLRSTVEMKEKRLLTIEEK 406 (1255)
Q Consensus 381 ~~~~e~~~~~~~Le~KEkeLl~leEK 406 (1255)
|+-.++...+..|+..|..|..|..+
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44447888888888888888887543
No 244
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.25 E-value=7.2e+02 Score=25.29 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=40.3
Q ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000847 546 IQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREK 597 (1255)
Q Consensus 546 i~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekek 597 (1255)
+...+--+...+-|+..|..+..++-.+|+..+.+.+.|..+.+.-|..+..
T Consensus 62 ~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~ 113 (139)
T PF05615_consen 62 ILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566778999999999999999999999988888877776666554
No 245
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=25.08 E-value=3.7e+02 Score=30.16 Aligned_cols=50 Identities=26% Similarity=0.481 Sum_probs=33.3
Q ss_pred HhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhh
Q 000847 756 VKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKH 805 (1255)
Q Consensus 756 i~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe~fl~~vEkl 805 (1255)
+..+.+.|..+|..+++....|..-.++|...|.+|-+||+.|-..+...
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666667777777777777777777777777777777776655443
No 246
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=24.88 E-value=6.8e+02 Score=26.40 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCCccccchhhh---hhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHH--------------HHHHHHHH
Q 000847 358 LIYLLYFICAYSLPSFSYNVLLN---FFFQEADCLRSTVEMKEKRLLTIEEKLNARER--------------VEIQKLLD 420 (1255)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~--------------~eIQkLld 420 (1255)
|.++|++|..|.+..+-.+..=. .|...++.-+.....-+..+...+.+|..-.. ...+.+++
T Consensus 28 nflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~ 107 (174)
T PRK07352 28 NLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEK 107 (174)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 000847 421 DQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455 (1255)
Q Consensus 421 eh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~ 455 (1255)
+-+...+..+.....+++..+...-.+|+.-+..+
T Consensus 108 ~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~l 142 (174)
T PRK07352 108 QAIEDMARLKQTAAADLSAEQERVIAQLRREAAEL 142 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 247
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=24.71 E-value=8.1e+02 Score=25.51 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=9.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHH
Q 000847 605 LDEKRDEINKEQEKIADEKKKL 626 (1255)
Q Consensus 605 LDEKR~el~KE~~~I~eEre~l 626 (1255)
||+.+..|...+....+-+...
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea 72 (156)
T CHL00118 51 LDERKEYIRKNLTKASEILAKA 72 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333
No 248
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=24.34 E-value=9.9e+02 Score=26.41 Aligned_cols=117 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhccCCCccccchhhhhhhhhhHHhhhhHHhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 000847 354 FLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEF 433 (1255)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eF 433 (1255)
|+.-+.++|||||.+.+ +--....|+.|...+.. .-.-+.+-+.+.++++.+++..|..-+.+-
T Consensus 58 w~~I~FliL~~lL~k~~---------------~~pI~~vLe~R~~~I~~-~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA 121 (204)
T PRK09174 58 WLAITFGLFYLFMSRVI---------------LPRIGGIIETRRDRIAQ-DLDQAARLKQEADAAVAAYEQELAQARAKA 121 (204)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhh-hhhhhhhHHHHHHHHHHHHHhhhHHHHH
Q 000847 434 ELELEEKRKSIEEEMRSKISALDQQ-EFEISHREEKLERREQALDKKSDRVKEK 486 (1255)
Q Consensus 434 ElElE~kRKs~eeel~~K~~~~e~r-Evei~h~Eekl~krEqaLe~k~~~lkEK 486 (1255)
..-++.-|.....+.+..+...+.. +.-+..-+..+..-....-..+..+...
T Consensus 122 ~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e 175 (204)
T PRK09174 122 HSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEE 175 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 249
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.84 E-value=9e+02 Score=25.74 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 000847 572 QQIETYRHQQELLLKEHEDLQQDRE 596 (1255)
Q Consensus 572 eEIe~~R~Qke~LlkEae~Lk~eke 596 (1255)
.+++.+|..+..|.++...++..-.
T Consensus 73 ~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 73 LELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444444433
No 250
>PF12474 PKK: Polo kinase kinase ; InterPro: IPR022165 This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00069 from PFAM. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase. ; GO: 0004674 protein serine/threonine kinase activity
Probab=23.39 E-value=8.9e+02 Score=25.56 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 000847 564 LRLQSQLKQQIETY-RHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 642 (1255)
Q Consensus 564 l~LqseLKeEIe~~-R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~ 642 (1255)
-.|+-.=|+.|+.+ ..|-..+-.++-.++.+-.+ + |--=+..|..+...+..+++++-.|...+.++.|.++.
T Consensus 29 E~l~r~qk~~iE~le~~q~~e~r~~~KriR~Eq~~---~---l~~FkesLk~~~k~~k~e~ekl~~f~~qrk~~~k~~~~ 102 (142)
T PF12474_consen 29 EQLERQQKQQIEKLEQRQTQERRRLPKRIRAEQKK---R---LAMFKESLKIEKKELKQEVEKLPQFKEQRKKRQKAEKE 102 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHhccCchHHHHHHhHhHHHHHHHHHHHHHH
Confidence 33344444455443 33445555555555544322 1 11225667777778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 643 AMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFE 689 (1255)
Q Consensus 643 ~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~eK~q~Erad~l~d~E 689 (1255)
.+........ ..|.+.....-..-..+|++++-.+|-+.|
T Consensus 103 ~~~~k~~~qe-------~ef~~~~~~~~~~~L~qi~~e~r~~l~e~E 142 (142)
T PF12474_consen 103 ELEQKHEEQE-------QEFLAKQEENLEEALKQIQNEKRHELAEHE 142 (142)
T ss_pred HHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8877766544 468888887777778899999888876643
No 251
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.19 E-value=8.4e+02 Score=25.18 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=10.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHH
Q 000847 605 LDEKRDEINKEQEKIADEKKKLEKL 629 (1255)
Q Consensus 605 LDEKR~el~KE~~~I~eEre~lek~ 629 (1255)
||+.+..|...+.....-++.+..+
T Consensus 36 l~~R~~~I~~~l~~A~~~~~ea~~~ 60 (141)
T PRK08476 36 MDNRNASIKNDLEKVKTNSSDVSEI 60 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333
No 252
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=23.13 E-value=6.7e+02 Score=25.43 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=26.1
Q ss_pred HhhhhHHhhHHhHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHH
Q 000847 388 CLRSTVEMKEKRLLTIEEKLNA-------RERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKI 452 (1255)
Q Consensus 388 ~~~~~Le~KEkeLl~leEKL~a-------RE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~ 452 (1255)
..+..|+.++++|..+..+|.. -++..-++-+......|....+....+|...+..+-..|..++
T Consensus 47 ~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i 118 (158)
T PF03938_consen 47 ALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKI 118 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444443332 2233333333333333333344444444444444444443333
No 253
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=23.13 E-value=1e+03 Score=28.25 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHhHH--------HHHHhhhhhcH
Q 000847 704 DKMEKELQERTRTFEEKRERVLNDIAHLKEV-AEGEIQEIKSERDQLEKEKHEVKVNREKL--------QEQQLGMRKDI 774 (1255)
Q Consensus 704 EE~E~~L~EREk~FEeek~~EL~~In~lke~-a~kE~Eev~~E~~rLekEr~Ei~~~ke~l--------e~q~~em~kdI 774 (1255)
|||+.....=..+|.+- ...=.=||| +-.||.+|+.|--.|=..|+.-+..-+++ +.|++|||.||
T Consensus 178 ee~d~S~k~ik~~F~~l-----~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadI 252 (302)
T PF07139_consen 178 EEMDSSIKKIKQTFAEL-----QSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADI 252 (302)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 45555555555566542 222222333 34677777777776666666655555544 67888999998
Q ss_pred HHHHHHHH
Q 000847 775 DELDILCR 782 (1255)
Q Consensus 775 eeL~~ls~ 782 (1255)
--.+.-|+
T Consensus 253 K~fvs~rk 260 (302)
T PF07139_consen 253 KHFVSERK 260 (302)
T ss_pred HHHhhhhh
Confidence 77766554
No 254
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=23.12 E-value=1.1e+03 Score=26.33 Aligned_cols=167 Identities=20% Similarity=0.304 Sum_probs=79.7
Q ss_pred HHHhHHHHhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhHHHH
Q 000847 629 LQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLS----------EKAKNDRRKMLEEFEMQRMNQEAE 698 (1255)
Q Consensus 629 ~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~----------eK~q~Erad~l~d~EmqkreLE~~ 698 (1255)
|+..--..-...-..++++|..+...+..+|+...+.....-+.|- ..++.+ -+.|.+|-..|-.++.+
T Consensus 8 yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~e-Lq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 8 YLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQE-LQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 3333334444444455555555555555555544444433333322 222222 23456777777777777
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHH---HH--hhhHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHhhhHh
Q 000847 699 LLNRRDKMEK-------ELQERTRTFEEKRER---VL--NDIAHLKEVAEGEIQEI--KSE---RDQLEKEKHEVKVNRE 761 (1255)
Q Consensus 699 ~~~r~EE~E~-------~L~EREk~FEeek~~---EL--~~In~lke~a~kE~Eev--~~E---~~rLekEr~Ei~~~ke 761 (1255)
|+.=++++.+ .+++=+-.|=++|.+ ++ ..|..+-+.+.+++-.= .++ ..-+..--.-|...-.
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~ 166 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666655 333334444444432 33 34555555555553210 000 1112222223333334
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHH
Q 000847 762 KLQEQQLGMRKDIDELDILCRRLYGDREQFKREKE 796 (1255)
Q Consensus 762 ~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe 796 (1255)
+|..+..-+-.....|..-+.+|.+|..++..++.
T Consensus 167 ~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~ 201 (206)
T PF14988_consen 167 QLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQW 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666666666666665554
No 255
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=22.97 E-value=1e+03 Score=27.05 Aligned_cols=154 Identities=23% Similarity=0.339 Sum_probs=86.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhhccccch--hh
Q 000847 124 WTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTL--TD 201 (1255)
Q Consensus 124 wtSk~eel~qa~~e~e~~lKREqaahl~AlsEaeKREEnLkKALgiEKqCvadLEKAL~emr~E~AeiK~~sesKL--ae 201 (1255)
|.-|.++|++||..-+... +|||. +|+.--+.||+-|..||.--.+...+ .+-. -.
T Consensus 1 Yvekv~~LQ~AL~~LQaa~--------------ekRE~-------lE~rLR~~lE~EL~~lr~qq~~~~~~-~~~~~~~~ 58 (205)
T PF12240_consen 1 YVEKVERLQQALAQLQAAC--------------EKREQ-------LERRLRTRLERELESLRAQQRQGNSS-GSSSPSNN 58 (205)
T ss_pred ChhHHHHHHHHHHHHHHHH--------------HHHHH-------HHHHHHHHHHHHHHHHHHhhccCCCC-CCCCCCCc
Confidence 3457899999998876543 45554 45666788999999998876654322 2222 33
Q ss_pred HHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHH--------HHHH-hhhHhHHHhHHHHHHHh
Q 000847 202 ANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVI--------KRER-LSLVTEREAHEAAFYKQ 272 (1255)
Q Consensus 202 A~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~L--------rRer-lSf~~Erea~E~~~~~q 272 (1255)
|..|... +-|-|+++.+.+|-.+--..|. |.+.--|+-++ +|.. +.-.+.+..++.-| +.
T Consensus 59 ~~~L~~~----LrEkEErILaLEad~~kWEqkY------LEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~-r~ 127 (205)
T PF12240_consen 59 ASNLKEL----LREKEERILALEADMTKWEQKY------LEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSL-RE 127 (205)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccc-cc
Confidence 5555544 5566888888887777665554 22222222221 2333 33334444443333 33
Q ss_pred HhhHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhh
Q 000847 273 REDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERD 317 (1255)
Q Consensus 273 Re~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~keke 317 (1255)
-++|---.++.++.+.||-.+-. .|.|.|..++..++.
T Consensus 128 ~eel~~a~~K~qemE~RIK~Lha-------qI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHA-------QIAEKDAMIKVLQQR 165 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 45555555666666666555543 344445555554443
No 256
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.91 E-value=1.8e+03 Score=28.96 Aligned_cols=74 Identities=23% Similarity=0.357 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHh----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000847 471 RREQALDKKSDRVKEKENDLAARLKSVKEREKF----VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 546 (1255)
Q Consensus 471 krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEks----l~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi 546 (1255)
.+-+.|..+.+.+.++.+.|..|++.+-..=.. |-..|++.-.|...+. ..|..|+.-|++++.-+..|..++
T Consensus 593 ~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~---~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 593 ESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMK---DQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777766655433322 4445554444433333 246667777777777777777666
Q ss_pred H
Q 000847 547 Q 547 (1255)
Q Consensus 547 ~ 547 (1255)
.
T Consensus 670 ~ 670 (717)
T PF10168_consen 670 E 670 (717)
T ss_pred h
Confidence 6
No 257
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=22.80 E-value=28 Score=43.83 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=9.2
Q ss_pred hcHHHHHHHHHHHHHh-----------------HhhhhhcccceeeeccchhhhHHHHHHHH
Q 000847 91 KDREALMEKVSKLEKE-----------------LYDYQYNMGLLLIEKKEWTSKIEELRQSF 135 (1255)
Q Consensus 91 ~d~~aL~a~iskLE~E-----------------lydYQynMGLLLiEkKEwtSk~eel~qa~ 135 (1255)
....+|+..|-.+-.. ++.+..+++-++-||..+..++.++...+
T Consensus 141 ~~Q~~im~~Iqev~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i 202 (713)
T PF05622_consen 141 STQHAIMEAIQEVTSNQQNVSLSQDSPEDLDSQSRRMYEELSRLVAERDELAQRCHELEKQI 202 (713)
T ss_dssp HHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777554432 22334467777888888777776665433
No 258
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.66 E-value=6.9e+02 Score=29.97 Aligned_cols=99 Identities=20% Similarity=0.342 Sum_probs=70.1
Q ss_pred hhhHHhHhhhhccchhHHHhhhhhHHHHHHHhhccchHHHhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHH
Q 000847 199 LTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLRE 278 (1255)
Q Consensus 199 LaeA~aLv~~~eeKslEvE~Kl~aAeaklAEa~Rk~s~~erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~e 278 (1255)
|..++.+..+|..-+-++-..| .|-+.++.+-|..+.+||.-|-.+.-.+..
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L----------~kl~~~i~~~lekI~sREk~iN~qle~l~~------------------ 273 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQL----------DKLQQDISKTLEKIESREKYINNQLEPLIQ------------------ 273 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------------
Confidence 5667777777777776665544 345677778888888888766544333322
Q ss_pred HHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhh
Q 000847 279 WEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLS 328 (1255)
Q Consensus 279 weKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~ 328 (1255)
.+...+.+|.+.+...++.-..+++..+.|.....+||..+..|+.-
T Consensus 274 ---eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 274 ---EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23445677778888888888888888888888888888888877654
No 259
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.53 E-value=4.8e+02 Score=27.12 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 000847 502 KFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQK 552 (1255)
Q Consensus 502 ksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~ 552 (1255)
++|...++++..+...|.+|.+.|+.|+..+.....++..+..++++-..-
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 455566667777778888888999999999988888888888887654433
No 260
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=22.39 E-value=50 Score=36.74 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccc
Q 000847 171 KQCVADLEKALRDMGEERAQTKLFSE 196 (1255)
Q Consensus 171 KqCvadLEKAL~emr~E~AeiK~~se 196 (1255)
++-|-++.|-++++++-....=.|-.
T Consensus 146 ~~~ve~~kk~~~~~~e~l~d~~~tL~ 171 (223)
T KOG0570|consen 146 SDIVEDFKKHLRQVREVLDDQFQTLR 171 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777777777765533333333
No 261
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=21.96 E-value=1.4e+03 Score=28.40 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=40.7
Q ss_pred HhhhHhHHHhHHHHHHHhHhhHH----HHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhh
Q 000847 255 RLSLVTEREAHEAAFYKQREDLR----EWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKK 324 (1255)
Q Consensus 255 rlSf~~Erea~E~~~~~qRe~L~----eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kk 324 (1255)
.-+...|..+..+.+.+-.+.+. -|.|.-...=+.+|+.|.-||.-|+-+ --.+.||+.+...
T Consensus 252 Le~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~-------~DL~dDL~ka~eT 318 (426)
T smart00806 252 LETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLI-------ADLKEDLEKAEET 318 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34445556666666655555555 466666666679999999999999864 3445555544443
No 262
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.77 E-value=2.4e+02 Score=26.49 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccchhhhhhH
Q 000847 761 EKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRA 817 (1255)
Q Consensus 761 e~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK~ckncge~~~e 817 (1255)
.+|+.+.+.++.+.|.|...-..-..--..+..||+.|+..+-- .|..|..+..+
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~--a~~e~~~Lk~E 55 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD--AYEENNKLKEE 55 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
No 263
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.53 E-value=1e+03 Score=26.24 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHH
Q 000847 698 ELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDEL 777 (1255)
Q Consensus 698 ~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL 777 (1255)
.|.+++..+=.....-++.++++ ..+..-+..+|-++...+..|+...+-+...++..+.+...|..+++.|
T Consensus 100 ~lk~~~~~~~e~~k~le~~~~~~--------~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKIEEK--------EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEAL 171 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHh
Q 000847 778 DILCRRLYGD 787 (1255)
Q Consensus 778 ~~ls~KLk~q 787 (1255)
+......+-+
T Consensus 172 ~~~~~~~e~~ 181 (190)
T PF05266_consen 172 KEEIENAELE 181 (190)
T ss_pred HHHHHHHHHH
No 264
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=21.43 E-value=1.4e+03 Score=28.11 Aligned_cols=17 Identities=12% Similarity=0.392 Sum_probs=9.4
Q ss_pred hhHHhHHHHHHHHHHHH
Q 000847 604 VLDEKRDEINKEQEKIA 620 (1255)
Q Consensus 604 ~LDEKR~el~KE~~~I~ 620 (1255)
.||+.+..|.+.+....
T Consensus 29 ~l~~R~~~I~~~L~eAe 45 (445)
T PRK13428 29 LMAARQDTVRQQLAESA 45 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555554
No 265
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=21.40 E-value=7.5e+02 Score=25.92 Aligned_cols=70 Identities=13% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 000847 721 RERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLE 800 (1255)
Q Consensus 721 k~~EL~~In~lke~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~qRE~~~~ERe~fl~ 800 (1255)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777788888899998888888877543332 33444444444444444444555555
Q ss_pred HHHhhc
Q 000847 801 FVEKHT 806 (1255)
Q Consensus 801 ~vEklK 806 (1255)
+++++.
T Consensus 82 ql~qv~ 87 (131)
T PF11068_consen 82 QLEQVQ 87 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
No 266
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.39 E-value=1.3e+03 Score=26.65 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=58.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhhcH
Q 000847 580 QQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK 659 (1255)
Q Consensus 580 Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 659 (1255)
|+.+=-+|.++|+-+--=-=+.-+-++++.....|+++.|.- +|....++=.++=-+.+....+-++.+|+.+ +-
T Consensus 37 q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~s---sL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V--~t 111 (230)
T PF03904_consen 37 QMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKS---SLEETTKDFIDKTEKVHNDFQDILQDELKDV--DT 111 (230)
T ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ch
Confidence 333345688999988776778888899999999888888864 5655555555555556666666777777776 44
Q ss_pred HHHHHHHHHH
Q 000847 660 EAFEATMRHE 669 (1255)
Q Consensus 660 EsF~~~M~hE 669 (1255)
+.|.+.|..+
T Consensus 112 de~k~~~~~e 121 (230)
T PF03904_consen 112 DELKNIAQNE 121 (230)
T ss_pred HHHHHHHHHH
Confidence 4666666544
No 267
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.37 E-value=4.2e+02 Score=28.52 Aligned_cols=89 Identities=33% Similarity=0.340 Sum_probs=41.3
Q ss_pred HHhhhhhHHHHHHHhhccchHH-------HhHHHHhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhh
Q 000847 216 VEEKFHAAEAKLAEVNRKSSEL-------EMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDE 288 (1255)
Q Consensus 216 vE~Kl~aAeaklAEa~Rk~s~~-------erKL~evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~ee 288 (1255)
.+.++.....-+|++-|..+++ ..+|+.+++.-....+..-.+.+++..++..+..-.+.|.+..+.++...+
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555554433 334444444445555556666677777777777777888888888888888
Q ss_pred hhHHHHHhhhhHhhhh
Q 000847 289 RLSELRRTLNQREVKA 304 (1255)
Q Consensus 289 rL~~~qr~LNqREe~~ 304 (1255)
-+.-++-.+|.-|++.
T Consensus 152 E~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888777777764
No 268
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.33 E-value=2.2e+02 Score=26.36 Aligned_cols=52 Identities=27% Similarity=0.480 Sum_probs=39.9
Q ss_pred hhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhHH
Q 000847 286 GDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKERED 337 (1255)
Q Consensus 286 ~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLEe~~kkie~~~~~Lk~ked 337 (1255)
.++||.+++..|-.-|.-|.+-...+..-+++++.++..+..-...|+...+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688899999999999999998899989999999988888877777766553
No 269
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.20 E-value=1.3e+02 Score=28.40 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccchhhHHhHhhhhccchhHHHhhhhhHH
Q 000847 171 KQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAE 224 (1255)
Q Consensus 171 KqCvadLEKAL~emr~E~AeiK~~sesKLaeA~aLv~~~eeKslEvE~Kl~aAe 224 (1255)
++++..+.+.+..|+.+...+.--...-+..+|.+.+++..|...+..=..++.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 778999999999999999999998999999999999998888877766555543
No 270
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=21.04 E-value=6.5e+02 Score=27.13 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Q 000847 410 RERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALD 456 (1255)
Q Consensus 410 RE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e 456 (1255)
+-+.+.+++..+++..|..-+.+-..=....|..+..+...++.+++
T Consensus 55 ~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~e 101 (155)
T PRK06569 55 TLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLE 101 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666766666666666555554444445555555555554443
No 271
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.97 E-value=7.8e+02 Score=28.79 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q 000847 166 ALSMEKQCVADLEKALRDMGE 186 (1255)
Q Consensus 166 ALgiEKqCvadLEKAL~emr~ 186 (1255)
+-.+..+|-.+|.+|.-.+.+
T Consensus 73 i~~~~~~a~~~L~~a~P~L~~ 93 (344)
T PF12777_consen 73 IEEIKEEAEEELAEAEPALEE 93 (344)
T ss_dssp HCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556677776666655544
No 272
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.84 E-value=8.4e+02 Score=28.45 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=55.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHH----HHHHHHHHHHH
Q 000847 496 SVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEK----SELLRLQSQLK 571 (1255)
Q Consensus 496 ~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeEr----~E~l~LqseLK 571 (1255)
.+.+-|+.|+..=+.+.. ++.+=+..+.++..|--.+-+-|+.++..+...+.+|+.++.=| .||-.|+.+|+
T Consensus 159 e~~~iE~~l~~ai~~~~~---~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQ---QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 344455555544433333 33333445556666666666666666667777777777777665 78889999999
Q ss_pred HHHHHHHHHH---HHHHHHHhHH
Q 000847 572 QQIETYRHQQ---ELLLKEHEDL 591 (1255)
Q Consensus 572 eEIe~~R~Qk---e~LlkEae~L 591 (1255)
+.-+.|=..- ..|..+.++.
T Consensus 236 ~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 236 KLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 9877765432 3444444443
No 273
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=1.8e+03 Score=28.05 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHH
Q 000847 614 KEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIE 653 (1255)
Q Consensus 614 KE~~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE 653 (1255)
+|+-+++-+-.-....++.|.++.--|...+|...+-+-|
T Consensus 189 qE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 189 QEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333333344456666666666666666665555
No 274
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.49 E-value=1.3e+02 Score=39.30 Aligned_cols=9 Identities=0% Similarity=0.051 Sum_probs=3.6
Q ss_pred ccchhhHHh
Q 000847 196 EKTLTDANT 204 (1255)
Q Consensus 196 esKLaeA~a 204 (1255)
|+|+|.-.+
T Consensus 697 DsKtaQnLs 705 (1102)
T KOG1924|consen 697 DSKTAQNLS 705 (1102)
T ss_pred chHHHHHHH
Confidence 344443333
No 275
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.47 E-value=1.2e+03 Score=25.82 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=27.5
Q ss_pred HhhhhHHHHHHHHhhhHhHHHhHHHHHHHhHhhHHHHHHhhchhhhhhHHHHHhh
Q 000847 243 ELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTL 297 (1255)
Q Consensus 243 evEaRE~~LrRerlSf~~Erea~E~~~~~qRe~L~eweKkLqe~eerL~~~qr~L 297 (1255)
-.|.-+..|-+-..+...|.-.+-..+.+-.+..++-+++|++.+..|...+..|
T Consensus 51 k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l 105 (194)
T PF15619_consen 51 KYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDEL 105 (194)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454445555555555555555555555555555555555555444333
No 276
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.40 E-value=5.6e+02 Score=27.97 Aligned_cols=39 Identities=33% Similarity=0.470 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000847 567 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 605 (1255)
Q Consensus 567 qseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~L 605 (1255)
...|+.|+..++.+-+.|.+|.+.|.++...++.+.+.|
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999888876
No 277
>COG5570 Uncharacterized small protein [Function unknown]
Probab=20.35 E-value=1.7e+02 Score=26.83 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000847 544 LQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 580 (1255)
Q Consensus 544 ~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Q 580 (1255)
..|+++...=-.--..-.++-|-..-||+||+++++|
T Consensus 19 ~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 19 REIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666655555556677888888899999999886
No 278
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.33 E-value=2e+02 Score=34.49 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=0.0
Q ss_pred hHHHHHHhhchhhhhhHHHHHhhhhHhhhhhhhHHHHHHhhhhHH----HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 000847 275 DLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLE----ELEKKIDLSSSKLKEREDEINSRLAELVVKE 350 (1255)
Q Consensus 275 ~L~eweKkLqe~eerL~~~qr~LNqREe~~nE~~~~lk~kekeLE----e~~kkie~~~~~Lk~keddi~~rla~L~~kE 350 (1255)
..-......++.=+++...|..|++|++.+++.-+.+..-...|| .+++.||.-.....+--.+..+ +..+++-|
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n-~~~~~~D~ 293 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN-LEALDIDE 293 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-CcCCCchh
Q ss_pred hhhhhhHHHHHHHHhhccCC
Q 000847 351 RVGFLAYLIYLLYFICAYSL 370 (1255)
Q Consensus 351 k~~~~~~~~~~~~~~~~~~~ 370 (1255)
- |+|+..|
T Consensus 294 ~------------~~~~~~l 301 (365)
T KOG2391|consen 294 A------------IECTAPL 301 (365)
T ss_pred h------------hhccchH
No 279
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.29 E-value=5.3e+02 Score=27.51 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=13.3
Q ss_pred HhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 000847 519 IADKESLQILKVEIDQIESENAQQELQ 545 (1255)
Q Consensus 519 ~~dkEel~~lK~elEK~~a~~e~q~~q 545 (1255)
.+..+++..+|.+|++..++++.=+.|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666544444333333
No 280
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.16 E-value=5e+02 Score=30.09 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=23.8
Q ss_pred HHHHHHhhhhHHHHHhhhhhhhhhhhhhHHHHHH
Q 000847 308 ERILKQKERDLEELEKKIDLSSSKLKEREDEINS 341 (1255)
Q Consensus 308 ~~~lk~kekeLEe~~kkie~~~~~Lk~keddi~~ 341 (1255)
...+...+++++-+++..+.....+++-.-+...
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~ 310 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAALTSLQQTRVEADR 310 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456778888888888888887777665544443
Done!