Query 000847
Match_columns 1255
No_of_seqs 42 out of 44
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 15:55:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000847.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_619-623//hhsearch_pdb/000847hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 64.3 15.5 20 65-84 322-345 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 62.7 9.9 22 111-132 457-480 (1184)
3 3vkg_A Dynein heavy chain, cyt 1.0 1 1 33.6 28.7 31 796-827 2392-2422(3245)
4 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 29.9 17.3 10 69-78 300-309 (1080)
5 3na7_A HP0958; flagellar bioge 1.0 1 1 29.8 21.1 68 556-624 3-70 (256)
6 3vkg_A Dynein heavy chain, cyt 1.0 1 1 28.0 28.0 16 35-50 1373-1389(3245)
7 1c1g_A Tropomyosin; contractIl 1.0 1 1 27.9 40.9 279 381-666 3-281 (284)
8 3oja_B Anopheles plasmodium-re 1.0 1 1 25.0 16.1 10 5-14 5-14 (597)
9 2qag_B Septin-6, protein NEDD5 1.0 1 1 19.9 0.0 101 661-786 319-426 (427)
10 3oc5_A Toxin coregulated pilus 1.0 1 1 19.2 0.4 16 1239-1254 258-273 (318)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=64.32 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=8.7
Q ss_pred CCCCCCHHHHHHHHH----HCCCH
Q ss_conf 578986268899888----13522
Q 000847 65 VFPAESEDDWRRFRE----AGLLD 84 (1255)
Q Consensus 65 ~~~~~~~~~w~r~~e----~g~ld 84 (1255)
+....|...|..++. .||-+
T Consensus 322 ~~~~~d~~~f~~~~~a~~~lg~~~ 345 (1184)
T 1i84_S 322 IPAQQDDEMFQETLEAMTIMGFTE 345 (1184)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHCEECH
T ss_conf 889876999999999988212589
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=62.72 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=9.3
Q ss_pred HHCCCCEEEECCCH--HHHHHHHH
Q ss_conf 21111001330100--13499999
Q 000847 111 QYNMGLLLIEKKEW--TSKIEELR 132 (1255)
Q Consensus 111 QynMGLLLiEkKEw--tSk~eel~ 132 (1255)
.+.+|+|=|=-=|- ..-||||-
T Consensus 457 ~~~IgvLDi~GFE~f~~NsfeQlc 480 (1184)
T 1i84_S 457 ASFLGILDIAGFEIFEINSFEQLC 480 (1184)
T ss_dssp CEEEEEEECCCCCCCSSBCHHHHH
T ss_pred CCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 535888624786777744399998
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=33.58 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99999998612553111245687750389999
Q 000847 796 ERFLEFVEKHTSCKNCGEMMRAFVISNLQLPD 827 (1255)
Q Consensus 796 e~fl~~vEklK~ckncge~~~efvlsdLql~d 827 (1255)
..|-..-++++.+-.-|-++. |+++||...+
T Consensus 2392 ~~I~~~R~~YrpvA~r~s~Ly-F~i~dL~~i~ 2422 (3245)
T 3vkg_A 2392 QEISEVSALYNPMALSCSRVY-FAMEELSQFH 2422 (3245)
T ss_dssp HHHHHHHHHSHHHHHHHHHHH-HHHTGGGGST
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCC
T ss_conf 999999998699999998999-9999973078
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=29.94 Aligned_cols=10 Identities=10% Similarity=0.209 Sum_probs=3.8
Q ss_pred CCHHHHHHHH
Q ss_conf 8626889988
Q 000847 69 ESEDDWRRFR 78 (1255)
Q Consensus 69 ~~~~~w~r~~ 78 (1255)
.|...|..++
T Consensus 300 dD~~~f~~~~ 309 (1080)
T 2dfs_A 300 DDAKEMVNTR 309 (1080)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 4899999999
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=29.76 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 388778999999999999999999999999787689998998999886657858988999989999999
Q 000847 556 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 624 (1255)
Q Consensus 556 teeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~eEre 624 (1255)
|.+.=.-++.||. +-.+|+.++++...|-++.++|..+...+....+.+...-..+.++...+..+-.
T Consensus 3 m~~~L~~L~~LQ~-lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~ 70 (256)
T 3na7_A 3 SNTHLKQLIEISH-LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70 (256)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6899999999999-9999999999998758999999999999999999999999999999999997899
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=28.04 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=10.5
Q ss_pred C-CEEEECCCCCCCCCC
Q ss_conf 6-411103568899999
Q 000847 35 G-KAVAFAETQSVPPPP 50 (1255)
Q Consensus 35 g-k~~~~~~~~~~~~~~ 50 (1255)
| +.|.|+|.+-.|++-
T Consensus 1373 Gk~~VlFiDDiNmp~~D 1389 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTD 1389 (3245)
T ss_dssp TCEEEEEETTTTCCCCC
T ss_pred CCEEEEEECCCCCCCCC
T ss_conf 95699996566777866
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=27.92 Aligned_cols=279 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44455687555577668759999999866779999988779899988756678998999852199999988998745545
Q 000847 381 FFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEF 460 (1255)
Q Consensus 381 ~~~~e~~~~~~~Le~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElElE~kRKs~eeel~~K~~~~e~rEv 460 (1255)
+|...+..++..++.-...+-.++.+| ..++.-+......+..-..... .+......+...+......+.....
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l-----~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADK-----KAAEDRSKQLEDELVSLQKKLK-ATEDELDKYSEALKDAQEKLELAEK 76 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999998876888999999999999-----9999889888999999999999-9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44336989888798777735699888898999986479998967999997799999889639999998998998776789
Q 000847 461 EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENA 540 (1255)
Q Consensus 461 ei~h~Eekl~krEqaLe~k~~~lkEKEkdl~~K~k~LKEkEksl~aeEK~lE~ek~~L~~dkEel~~lK~elEK~~a~~e 540 (1255)
.+...+..+..-...+......+......+..-...+...+..+..-+..+..-...+..-...+..+...+......+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (284)
T 1c1g_A 77 KATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 156 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89877988999999999889889988988999999999999888889999998887775106679999999999999888
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999996410138877899999999999999999999999978768999899899988665785898899998999
Q 000847 541 QQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA 620 (1255)
Q Consensus 541 ~q~~qi~ee~e~LkiteeEr~E~l~LqseLKeEIe~~R~Qke~LlkEae~Lk~ekekFE~EWE~LDEKR~el~KE~~~I~ 620 (1255)
.-...+......+.-...+...+-.-...+...|+.+..+...+..+...+......+......+......+..+...+.
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 236 (284)
T 1c1g_A 157 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236 (284)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89988999998899888889989998987887999999999999999999997587788899999999999998889899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 9999999997849998489999999999997777642099999987
Q 000847 621 DEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATM 666 (1255)
Q Consensus 621 eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M 666 (1255)
.+...+..-...-...+..-...+ ..+...+..+...-+.+.+.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 237 TRAEFAERSVTKLEKSIDDLEDEL-YAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999988999999999999999-999988999999999999974
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=25.04 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=5.0
Q ss_pred CCCCCCCCCC
Q ss_conf 9998898766
Q 000847 5 QRRPIPATKL 14 (1255)
Q Consensus 5 q~k~w~~~s~ 14 (1255)
++-.|++|..
T Consensus 5 ~~~~l~~~~~ 14 (597)
T 3oja_B 5 QRYNVKPRQP 14 (597)
T ss_dssp ------CCCS
T ss_pred CCCCCCCCCC
T ss_conf 4322567899
No 9
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=19.91 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999877778898899997799998989984200899-------999878998899999999889999999864577899
Q 000847 661 AFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEA-------ELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKE 733 (1255)
Q Consensus 661 sF~~~M~hE~s~~~eK~q~Erad~l~d~ElqkreLE~-------~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lke 733 (1255)
++...++.++.....+++...+.|-..|..+-.+-+. +++.++++|.+.++...+.+|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~------------ 386 (427)
T 2qag_B 319 SLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKK------------ 386 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_conf 36677777768899999999999999999999999999999999999999999999999999999999------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 97878997899998779888788655757889886534348999999998567
Q 000847 734 VAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYG 786 (1255)
Q Consensus 734 ~a~kE~Eev~~E~~rLekEr~Ei~~~ke~le~q~~em~kdIeeL~~ls~KLk~ 786 (1255)
.+|+.|+......+...+..+.......-.+..-..|-++
T Consensus 387 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (427)
T 2qag_B 387 -------------KSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426 (427)
T ss_dssp -----------------------------------------------------
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf -------------9999989889998899998743100012543334443246
No 10
>3oc5_A Toxin coregulated pilus biosynthesis protein F; multidomain protein, immunoglobulin-like (IG-like) fold, CEL adhesion; 2.40A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=19.21 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 9776434543332345
Q 000847 1239 HPGEASIGKKLWNFFT 1254 (1255)
Q Consensus 1239 HPGEvSIGKKLWtFFT 1254 (1255)
||-+.+.||+||+|.|
T Consensus 258 h~s~n~~Gk~i~~~st 273 (318)
T 3oc5_A 258 QPSNNLTGKKLYNVST 273 (318)
T ss_dssp CC---CCSEEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
T ss_conf 4456777640278852
Done!