Query 000847
Match_columns 1255
No_of_seqs 42 out of 44
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 16:03:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000847.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_619-623//hhsearch_scop/000847hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cosa1 a.5.2.1 (A:8-48) Serin 6.9 47 0.0034 6.7 3.8 31 72-103 4-41 (41)
2 d2axth1 f.23.33.1 (H:2-65) Pho 5.2 67 0.0048 5.6 0.3 12 5-16 17-28 (64)
3 d1fiua_ c.52.1.10 (A:) Restric 2.4 1.7E+02 0.012 2.6 1.9 19 877-895 74-92 (286)
4 d1o4va_ c.23.8.1 (A:) N5-CAIR 2.3 1.8E+02 0.013 2.3 -0.0 14 67-80 129-142 (169)
5 d1ef1c_ a.137.5.1 (C:) Moesin 2.3 1.7E+02 0.012 2.7 -0.2 15 761-775 29-43 (90)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 2.2 1.9E+02 0.014 2.2 5.3 35 774-808 54-88 (88)
7 d2j9ub1 g.41.11.1 (B:115-161) 2.1 1.7E+02 0.012 2.6 -0.3 9 808-816 29-37 (47)
8 d1pfta_ g.41.3.1 (A:) Transcri 1.8 1.1E+02 0.0082 3.9 -1.7 14 808-821 27-40 (50)
9 d2a1ja1 a.60.2.5 (A:837-898) D 1.8 89 0.0065 4.6 -2.2 16 1240-1255 41-56 (62)
10 d2htja1 a.4.5.73 (A:1-73) P fi 1.8 2.4E+02 0.018 1.4 1.2 29 795-824 2-30 (73)
No 1
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.88 E-value=47 Score=6.72 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=22.5
Q ss_pred HHHHHHHHHCCCHHHHHHH-------HCHHHHHHHHHHH
Q ss_conf 6889988813522477535-------3299999999988
Q 000847 72 DDWRRFREAGLLDEATMER-------KDREALMEKVSKL 103 (1255)
Q Consensus 72 ~~w~r~~e~g~lde~s~~r-------~d~~aL~a~iskL 103 (1255)
...+-+..||| |++-.-| |.-+|.++||||.
T Consensus 4 QMlqdl~~aG~-D~~m~iral~qt~~rsieaaie~iskm 41 (41)
T d2cosa1 4 QMLQELVNAGC-DQEMAGRALKQTGSRSIEAALEYISKM 41 (41)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 89999999079-799999999982762299999998629
No 2
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.22 E-value=67 Score=5.59 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCC
Q ss_conf 999889876678
Q 000847 5 QRRPIPATKLTP 16 (1255)
Q Consensus 5 q~k~w~~~s~tp 16 (1255)
.+|+-|||-+||
T Consensus 17 yGKVaPGWGTTp 28 (64)
T d2axth1 17 YGKVAPGWGTTP 28 (64)
T ss_dssp SSCCCSTTTTHH
T ss_pred CCCCCCCCCCCH
T ss_conf 574258867657
No 3
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.44 E-value=1.7e+02 Score=2.60 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHCCCCCCC
Q ss_conf 3278766543204697875
Q 000847 877 MSWLRKCTSKIFSISPIKK 895 (1255)
Q Consensus 877 ~SwlrKCtskIFk~SP~K~ 895 (1255)
-.|+++|-.++..+-|++-
T Consensus 74 ~~Fi~~tf~~l~hlRPG~W 92 (286)
T d1fiua_ 74 SEFVQSAFEKLQHIRPGDW 92 (286)
T ss_dssp HHHHHHHHGGGTTTSCSCE
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999998615788874
No 4
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=2.28 E-value=1.8e+02 Score=2.35 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=7.4
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 89862688998881
Q 000847 67 PAESEDDWRRFREA 80 (1255)
Q Consensus 67 ~~~~~~~w~r~~e~ 80 (1255)
.+.|.++|+++++-
T Consensus 129 ~l~d~~i~~kl~~~ 142 (169)
T d1o4va_ 129 GIKYPEIARKVKEY 142 (169)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
T ss_conf 47899999999999
No 5
>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.28 E-value=1.7e+02 Score=2.66 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHCHH
Q ss_conf 578898865343489
Q 000847 761 EKLQEQQLGMRKDID 775 (1255)
Q Consensus 761 e~le~q~~em~kdIe 775 (1255)
++++.|...++.+|+
T Consensus 29 k~lq~qL~~L~~EL~ 43 (90)
T d1ef1c_ 29 ERVQKHLKALTSELA 43 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.18 E-value=1.9e+02 Score=2.16 Aligned_cols=35 Identities=14% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999985676999899899999999861255
Q 000847 774 IDELDILCRRLYGDREQFKREKERFLEFVEKHTSC 808 (1255)
Q Consensus 774 IeeL~~ls~KLk~qRE~~~~ERe~fl~~vEklK~c 808 (1255)
|..|...-..|..+.+.+......+...+.+|.+|
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999975699
No 7
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=2.15 E-value=1.7e+02 Score=2.59 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=0.0
Q ss_pred CCCHHHHHH
Q ss_conf 531112456
Q 000847 808 CKNCGEMMR 816 (1255)
Q Consensus 808 ckncge~~~ 816 (1255)
|.|||+..+
T Consensus 29 C~nCGV~~D 37 (47)
T d2j9ub1 29 CINCGVPAD 37 (47)
T ss_dssp CTTTCCBCC
T ss_pred CCCCCCCCC
T ss_conf 344587537
No 8
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=1.83 E-value=1.1e+02 Score=3.89 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 53111245687750
Q 000847 808 CKNCGEMMRAFVIS 821 (1255)
Q Consensus 808 ckncge~~~efvls 821 (1255)
|.+||.++.+-+++
T Consensus 27 C~~CG~Viee~~iD 40 (50)
T d1pfta_ 27 CAKCGYVIEENIID 40 (50)
T ss_dssp ESSSCCBCCCCCCC
T ss_pred CCCCCCEECCCCCC
T ss_conf 00498692524345
No 9
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.81 E-value=89 Score=4.65 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 7764345433323459
Q 000847 1240 PGEASIGKKLWNFFTS 1255 (1255)
Q Consensus 1240 PGEvSIGKKLWtFFTT 1255 (1255)
+|...++++||+||.+
T Consensus 41 ~G~~~~A~~i~~f~~~ 56 (62)
T d2a1ja1 41 LGNAANAKQLYDFIHT 56 (62)
T ss_dssp HSCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 5958999999999810
No 10
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=1.79 E-value=2.4e+02 Score=1.39 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 999999998612553111245687750389
Q 000847 795 KERFLEFVEKHTSCKNCGEMMRAFVISNLQ 824 (1255)
Q Consensus 795 Re~fl~~vEklK~ckncge~~~efvlsdLq 824 (1255)
+++|+.|+-.+.+| ..-+|...+.+++-|
T Consensus 2 kn~Il~fl~~~~~~-~T~EIAea~gvsaYQ 30 (73)
T d2htja1 2 KNEILEFLNRHNGG-KTAEIAEALAVTDYQ 30 (73)
T ss_dssp HHHHHHHHHHSCCC-CHHHHHHHHTSCHHH
T ss_pred CHHHHHHHHHCCCC-CHHHHHHHHHHHHHH
T ss_conf 20899998844896-378999996338999
Done!