Query 000848
Match_columns 1255
No_of_seqs 29 out of 31
Neff 1.7
Searched_HMMs 13730
Date Tue Mar 26 16:34:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000848.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_619-623//hhsearch_scop/000848hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fc6a1 g.66.1.1 (A:8-44) Targ 10.1 18 0.0013 11.1 -1.0 14 93-106 14-27 (37)
2 d1r9fa_ d.255.1.1 (A:) Tombusv 7.5 23 0.0017 10.3 -1.3 23 456-478 3-26 (124)
3 d2epqa1 g.37.1.1 (A:380-411) P 3.0 1E+02 0.0074 5.4 -0.6 11 1241-1251 3-13 (32)
4 d2g9da1 c.56.5.7 (A:3-342) Suc 2.9 1.4E+02 0.01 4.4 0.1 88 238-330 1-99 (340)
5 d1yfqa_ b.69.4.2 (A:) Cell cyc 2.7 1.5E+02 0.011 4.2 4.4 37 150-188 6-42 (342)
6 d2akla2 g.41.3.5 (A:3-40) Hypo 2.7 1.4E+02 0.01 4.3 -0.1 13 199-211 22-34 (38)
7 d1ifwa_ a.144.1.1 (A:) poly(A) 2.7 1.5E+02 0.011 4.1 0.4 53 695-747 9-62 (92)
8 d1dy2a_ d.169.1.5 (A:) Endosta 2.6 1.5E+02 0.011 4.0 2.7 68 553-625 40-116 (168)
9 d1ow1a_ b.131.1.3 (A:) SMART/H 2.6 1.6E+02 0.011 4.0 2.0 25 1051-1079 23-47 (170)
10 d1ekra_ d.58.21.1 (A:) Molybde 2.3 1.8E+02 0.013 3.6 0.7 15 1035-1049 57-74 (146)
No 1
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.13 E-value=18 Score=11.08 Aligned_cols=14 Identities=50% Similarity=1.213 Sum_probs=11.9
Q ss_pred HHHHCCCHHHHHCC
Q ss_conf 76312630222000
Q 000848 93 ELCRNFSAVAWCGK 106 (1255)
Q Consensus 93 ElcRnFsavawc~k 106 (1255)
.+|++|||-.||-.
T Consensus 14 ~iC~~FsAyGWCP~ 27 (37)
T d2fc6a1 14 SICDNFSAYGWCPL 27 (37)
T ss_dssp CBCSHHHHTCCCTT
T ss_pred CHHHHHHHCCCCCC
T ss_conf 46243122041678
No 2
>d1r9fa_ d.255.1.1 (A:) Tombusvirus P19 core protein, VP19 {Tomato bushy stunt virus, TBSV [TaxId: 12145]}
Probab=7.54 E-value=23 Score=10.31 Aligned_cols=23 Identities=48% Similarity=0.859 Sum_probs=16.4
Q ss_pred CCCC-CCCCCCCCCEEEEEEECCC
Q ss_conf 3999-9999996220358742057
Q 000848 456 MSPY-DPDEGPSITGWRVQRWESS 478 (1255)
Q Consensus 456 MSPy-dPdeGPsiTGWRvqrWESs 478 (1255)
.+|+ -|||.|+.+.||++.=|.+
T Consensus 3 ~spFkLpDESPs~~EWRlH~~e~~ 26 (124)
T d1r9fa_ 3 TSPFKLPDESPSWTEWRLHNDETN 26 (124)
T ss_dssp CCSCSSCCCCCCHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 787558999986256411045568
No 3
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.00 E-value=1e+02 Score=5.42 Aligned_cols=11 Identities=36% Similarity=1.319 Sum_probs=5.0
Q ss_pred CCCCCCCCCCE
Q ss_conf 56898888704
Q 000848 1241 AFGCPMCGGTW 1251 (1255)
Q Consensus 1241 ~~~CPMCGGtW 1251 (1255)
+|.||.|+-++
T Consensus 3 p~~cpic~qrf 13 (32)
T d2epqa1 3 PYSCPVCGLRF 13 (32)
T ss_dssp SSEETTTTEEC
T ss_pred CCCCCHHHHHH
T ss_conf 74363178775
No 4
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE {Vibrio cholerae [TaxId: 666]}
Probab=2.91 E-value=1.4e+02 Score=4.43 Aligned_cols=88 Identities=27% Similarity=0.325 Sum_probs=56.3
Q ss_pred CHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC------CCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEE
Q ss_conf 20357742023766568998526886432046058843069------999999998621135565567966511143687
Q 000848 238 KSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQW------PPSQNGAASKWFPTAKGLLGAGPSGIMAADVII 311 (1255)
Q Consensus 238 kstFeEKflsqq~qtsa~wpnflcvcsVf~sGsVQlhWsqw------Pp~qn~t~pkWF~TsKGlLg~GpSGIma~DAII 311 (1255)
||.|+..||+..-..+.-.+ +...--..-++..|..- |+ +.+..-|=...|-|.-|.-+.||.+-+.++
T Consensus 1 ~~~~~~~fl~~tl~~~~~~~----~~~~~~~~~~~~~~~~~g~l~~~p~-~~~~~~~~l~isagvHGnE~~gi~~l~~l~ 75 (340)
T d2g9da1 1 KSLFRQSFLFDSLDLDHPMV----AQTVRTEQGVTLKLHQRGVLEVIPA-QTDAATKNMVISCGIHGDETAPMELLDKWI 75 (340)
T ss_dssp CCSCSSCTTTTTSCSSSCCC----CEEEECTTSCEEEEEETTEEEEBCS-SCCSSCCEEEEEECSSSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCC----CCEEECCCCEEEEEECCCEEEEECC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 94346769999864899878----5068758967999946974799767-668899849998403488678999999998
Q ss_pred EC--CCCEEEEE---ECCCCCCEE
Q ss_conf 06--98439941---011289618
Q 000848 312 TD--SGAMHVAG---VPIVNPSTV 330 (1255)
Q Consensus 312 td--sGamhVAG---Vpi~NPSTV 330 (1255)
.+ +|.+-..+ +++.||...
T Consensus 76 ~~l~~~~~~~~~~~l~~~~Np~A~ 99 (340)
T d2g9da1 76 DDIVSGFQPVAERCLFIMAHPQAT 99 (340)
T ss_dssp HHHHSSSSCCCSEEEEECCCHHHH
T ss_pred HHHHCCCCCCCEEEEEECCCHHHH
T ss_conf 633214755534899970499999
No 5
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.71 E-value=1.5e+02 Score=4.15 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=30.0
Q ss_pred ECCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 127998854897745798863477873043099973589
Q 000848 150 IADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1255)
Q Consensus 150 ~adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1255)
+-..|.|.|..|.|||.+ +-|+.+-.-|.|-||--..
T Consensus 6 ~~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~~~ 42 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKFDI 42 (342)
T ss_dssp CSSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEEET
T ss_pred CCCCCCCCEEEEEEECCC--CEEEEEECCCEEEEEECCC
T ss_conf 688998978889995899--9999997999299997569
No 6
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.70 E-value=1.4e+02 Score=4.28 Aligned_cols=13 Identities=31% Similarity=0.716 Sum_probs=7.4
Q ss_pred CCCCHHHHCCCCC
Q ss_conf 4210001001220
Q 000848 199 SCWQREHEWRQDI 211 (1255)
Q Consensus 199 ~~w~~eheWrqd~ 211 (1255)
+|..|-|||..+.
T Consensus 22 vCPeC~hEW~~~~ 34 (38)
T d2akla2 22 VCPECAHEWSPNE 34 (38)
T ss_dssp EETTTTEEECTTT
T ss_pred ECCCCCCCCCCCC
T ss_conf 8975557478543
No 7
>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.67 E-value=1.5e+02 Score=4.09 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=38.2
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1666778611014230685121012211-4540568999988768999999850
Q 000848 695 DADFHSLPSIQHRQQYGPSLDRIKCRLL-EGTNAQEVRAMVLDMQARLLLDMLG 747 (1255)
Q Consensus 695 DADFHsLps~QhRqqygp~lDrIkcrll-eg~naqeVRamvlDmQarlllDmLg 747 (1255)
-.|+..++.-||||.-|-.|--.-.++. +-..|..+-.|.|+|-.--+|.||-
T Consensus 9 ~~~~~~~~~~~qk~~LGe~Lyp~V~~~~~~pe~A~KITGMLLEm~~~ell~lL~ 62 (92)
T d1ifwa_ 9 ANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLE 62 (92)
T ss_dssp CSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHC
T ss_conf 688743699999999899889999985358322463024420787899999987
No 8
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.63 E-value=1.5e+02 Score=4.04 Aligned_cols=68 Identities=28% Similarity=0.477 Sum_probs=0.0
Q ss_pred CCCCHHHHHEEEECCCCCEEEEEEEECCEE------EEEC---CCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 960144462002203786477566507303------4317---9867223045621653346765766520012432167
Q 000848 553 LPSDIRSLARIVYSAHGGEIAIALLRGGVH------IFSG---PNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTN 623 (1255)
Q Consensus 553 lP~d~rtLAriVySAhgGEiavAfl~GgVh------iFSG---pnf~pVdnyqInVgsaIa~PaFSsTsCCsASVWHDt~ 623 (1255)
|-+.+.-|..||+.+.--.+-|-=|+|.|- ||+| +--..+.-|-.+=---+.-|+..-.. |||..+
T Consensus 40 LSS~~QdL~siVr~~dR~~lPiVNlrgevLF~sW~siF~g~g~~~~~~~~IySFdGrdVl~D~~WP~K~-----vWHGS~ 114 (168)
T d1dy2a_ 40 LSSHLQDLSTVVRKAERFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWPQKV-----VWHGSN 114 (168)
T ss_dssp SCBTTBCGGGSSCGGGSSSCCEECTTSCEEESCSGGGGSSSCCBCCTTSCCBBTTSCBTTTCTTCSSCE-----EECCBC
T ss_pred HCCCCCCHHHEECCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCE-----EEECCC
T ss_conf 602524423302420047887274367650540999848888745899966617884202487776116-----773689
Q ss_pred CC
Q ss_conf 89
Q 000848 624 KD 625 (1255)
Q Consensus 624 kd 625 (1255)
.+
T Consensus 115 ~~ 116 (168)
T d1dy2a_ 115 PH 116 (168)
T ss_dssp TT
T ss_pred CC
T ss_conf 99
No 9
>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein, SHARP {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.58 E-value=1.6e+02 Score=3.97 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEECCEEECHHHHHCCCCCC
Q ss_conf 77528999988073210013342023864
Q 000848 1051 SSNIQVRLHYIDGNYTVLPEVVEASLGPH 1079 (1255)
Q Consensus 1051 S~NIqVRLHYIDGnYTVLPEVVEAsLgph 1079 (1255)
+++-.|++|||+|| ..+.+.+|-.+
T Consensus 23 ns~f~v~mH~l~Gn----~~la~~~l~~~ 47 (170)
T d1ow1a_ 23 NDTAAVQLHFVSGN----NVLAHRSLPLS 47 (170)
T ss_dssp TEEEEEEEEEEEEC----HHHHHHHSCCC
T ss_pred CCCHHHEEEEEECC----HHHHHHHCCCC
T ss_conf 56321127999687----88888607788
No 10
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=2.34 E-value=1.8e+02 Score=3.58 Aligned_cols=15 Identities=53% Similarity=0.773 Sum_probs=0.0
Q ss_pred HHCC---CCCCCCCCCCC
Q ss_conf 2014---78898565645
Q 000848 1035 RRTA---ALSHPLPVSQV 1049 (1255)
Q Consensus 1035 rRTa---~LqHPLPvSQV 1049 (1255)
|||+ +|-||||.+.|
T Consensus 57 K~Ts~lIPlCHpi~l~~v 74 (146)
T d1ekra_ 57 KRTWDLIPLCHPLMLSKV 74 (146)
T ss_dssp HTHHHHSTTCCCCCCSEE
T ss_pred HCCCCCCCCCCCCCCCEE
T ss_conf 325030644556632549
Done!