Your job contains 1 sequence.
>000849
MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD
IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG
TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV
KYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTS
DMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLE
KKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKK
QYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYK
LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGK
TICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA
MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVAR
MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDIT
NFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLL
CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMC
WEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFP
VESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLS
ELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLL
EVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG
NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHF
TKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKV
QDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAI
KRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAGEE
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000849
(1254 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 3359 0. 3
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 3214 0. 3
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 2463 0. 2
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 2455 0. 2
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 2453 0. 2
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 2437 0. 2
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 2018 0. 3
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 1028 1.7e-309 6
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 1334 2.7e-271 5
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit... 1645 5.5e-271 3
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe... 1484 2.0e-242 4
UNIPROTKB|E1BNG3 - symbol:ascc3 "Activating signal cointe... 1471 2.9e-242 4
UNIPROTKB|F6Y2F0 - symbol:ASCC3 "Uncharacterized protein"... 1467 1.3e-240 4
UNIPROTKB|Q8N3C0 - symbol:ASCC3 "Activating signal cointe... 1455 2.5e-239 4
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg... 1432 7.1e-236 4
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato... 1395 3.0e-231 4
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 1240 1.6e-228 4
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 1240 1.6e-228 4
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 1438 1.1e-220 4
UNIPROTKB|E2QVY0 - symbol:ASCC3 "Uncharacterized protein"... 1369 6.3e-217 3
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 1359 8.9e-214 4
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 1281 1.5e-198 3
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 984 3.6e-197 4
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 1145 3.5e-190 4
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 1193 4.3e-179 3
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 1170 1.9e-171 3
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 1071 8.1e-168 3
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 489 2.4e-160 6
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 489 2.4e-160 6
UNIPROTKB|B4E0P5 - symbol:SNRNP200 "U5 small nuclear ribo... 1541 3.7e-158 1
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 1082 1.8e-151 3
UNIPROTKB|F1SU36 - symbol:SNRNP200 "Uncharacterized prote... 1473 6.0e-151 1
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 730 7.3e-148 3
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 486 7.5e-103 5
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 486 7.5e-103 5
UNIPROTKB|I3LT20 - symbol:LOC100525691 "Uncharacterized p... 767 2.3e-75 1
UNIPROTKB|H9L351 - symbol:H9L351 "Uncharacterized protein... 724 1.1e-70 1
UNIPROTKB|F1RYR3 - symbol:LOC100517018 "Uncharacterized p... 485 1.2e-58 2
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 622 1.9e-57 2
UNIPROTKB|I3LAA7 - symbol:I3LAA7 "Uncharacterized protein... 591 2.3e-56 1
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 572 4.6e-53 4
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 568 1.2e-52 2
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 552 9.4e-50 2
ASPGD|ASPL0000030426 - symbol:AN5514 species:162425 "Emer... 360 2.8e-49 2
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 529 3.1e-47 1
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 529 1.3e-46 3
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 529 1.5e-46 3
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 458 1.7e-40 2
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 460 2.1e-40 2
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 445 2.3e-38 2
RGD|1561120 - symbol:Snrnp200 "small nuclear ribonucleopr... 403 3.0e-36 1
UNIPROTKB|A6NGI5 - symbol:HFM1 "Probable ATP-dependent DN... 420 2.5e-35 1
TAIR|locus:2089144 - symbol:RCK "ROCK-N-ROLLERS" species:... 375 4.3e-30 2
UNIPROTKB|H9L1I7 - symbol:SNRNP200 "Uncharacterized prote... 335 1.8e-27 2
UNIPROTKB|H9L353 - symbol:H9L353 "Uncharacterized protein... 308 4.2e-26 1
UNIPROTKB|D4A4G4 - symbol:Hfm1 "Protein Hfm1" species:101... 254 1.6e-18 1
GENEDB_PFALCIPARUM|PF13_0102 - symbol:PF13_0102 "DNAJ-lik... 269 2.8e-18 2
UNIPROTKB|Q8IEC8 - symbol:PF13_0102 "DnaJ/SEC63 protein, ... 269 2.8e-18 2
UNIPROTKB|E1C287 - symbol:E1C287 "Uncharacterized protein... 213 5.6e-16 1
UNIPROTKB|C9JAQ9 - symbol:SNRNP200 "U5 small nuclear ribo... 205 4.0e-15 2
MGI|MGI:2176740 - symbol:Helq "helicase, POLQ-like" speci... 231 5.1e-15 1
UNIPROTKB|E9PSY5 - symbol:Helq "Protein Helq" species:101... 225 1.5e-14 1
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 227 1.7e-14 1
UNIPROTKB|E9PT19 - symbol:Helq "Protein Helq" species:101... 225 1.7e-14 1
ZFIN|ZDB-GENE-040718-328 - symbol:sec63 "SEC63-like (S. c... 145 1.9e-14 2
ZFIN|ZDB-GENE-060503-421 - symbol:helq "helicase, POLQ-li... 222 4.4e-14 1
UNIPROTKB|Q9UGP8 - symbol:SEC63 "Translocation protein SE... 140 5.9e-14 3
MGI|MGI:2155302 - symbol:Sec63 "SEC63-like (S. cerevisiae... 140 5.9e-14 3
UNIPROTKB|F1PXD9 - symbol:POLQ "Uncharacterized protein" ... 160 7.2e-14 2
UNIPROTKB|E1B7B1 - symbol:SEC63 "Uncharacterized protein"... 140 9.4e-14 3
UNIPROTKB|I3LAH4 - symbol:I3LAH4 "Uncharacterized protein... 191 1.2e-13 1
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ... 170 1.4e-13 2
UNIPROTKB|E1C0C3 - symbol:SEC63 "Uncharacterized protein"... 145 1.4e-13 3
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 212 4.6e-13 1
UNIPROTKB|I3LVA7 - symbol:I3LVA7 "Uncharacterized protein... 176 5.0e-12 1
ZFIN|ZDB-GENE-040724-232 - symbol:si:rp71-1p14.5 "si:rp71... 167 8.5e-12 2
UNIPROTKB|E1BMC0 - symbol:POLQ "Uncharacterized protein" ... 153 1.0e-11 2
UNIPROTKB|J9P160 - symbol:HELQ "Uncharacterized protein" ... 199 1.4e-11 1
UNIPROTKB|E2RST3 - symbol:HELQ "Uncharacterized protein" ... 199 1.5e-11 1
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ... 195 3.4e-11 1
UNIPROTKB|Q8TDG4 - symbol:HELQ "Helicase POLQ-like" speci... 195 3.9e-11 1
UNIPROTKB|O75417 - symbol:POLQ "DNA polymerase theta" spe... 160 4.3e-11 3
UNIPROTKB|F1RVE2 - symbol:HELQ "Uncharacterized protein" ... 191 1.1e-10 1
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 138 3.5e-10 4
FB|FBgn0002905 - symbol:mus308 "mutagen-sensitive 308" sp... 141 9.6e-10 3
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 149 1.1e-09 3
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 144 1.1e-09 3
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 144 1.1e-09 3
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 130 1.2e-09 3
DICTYBASE|DDB_G0286131 - symbol:sec63 "protein transport ... 134 1.4e-09 2
TAIR|locus:2090744 - symbol:AT3G28870 "AT3G28870" species... 170 2.7e-09 1
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 123 6.4e-09 2
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 148 5.0e-08 2
UNIPROTKB|F1RT28 - symbol:SEC63 "Uncharacterized protein"... 129 6.0e-08 3
WB|WBGene00001047 - symbol:dnj-29 species:6239 "Caenorhab... 119 2.4e-07 2
WB|WBGene00016194 - symbol:C28H8.3 species:6239 "Caenorha... 120 3.5e-07 4
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab... 120 5.0e-07 2
UNIPROTKB|J9P0M0 - symbol:DDX60 "Uncharacterized protein"... 134 7.1e-07 3
UNIPROTKB|E2QSY2 - symbol:DDX60 "Uncharacterized protein"... 134 7.1e-07 3
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 154 9.2e-07 1
WARNING: Descriptions of 42 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 3359 (1187.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 675/961 (70%), Positives = 766/961 (79%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITRTVL VELT+TPDF WD+K+H YVE FW+IVEDNDG+ ILHHEYFLLKKQY +EDH
Sbjct: 1215 QPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEKILHHEYFLLKKQYIDEDH 1274
Query: 368 SLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQT 427
+L+FTVPI+EPLPPQ+ + + L +LPV+ E +L + +Q
Sbjct: 1275 TLHFTVPIFEPLPPQYFV---RVVSDKWLGSETVLPVSFRHLILPEKYPPPTELLD-LQP 1330
Query: 428 QVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSGKTICAEF 486
L N +L F P + ++ L N VL APTGSGKTICAEF
Sbjct: 1331 LPVTALRNPNYEILYQDFKH---FN--PVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEF 1385
Query: 487 AILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLL 546
AILRNH + MR VYIAP+EA+AK+++ WE KFGK LG+ VVELT ETA+DLKLL
Sbjct: 1386 AILRNHHEGPDA-TMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLL 1444
Query: 547 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIAS 606
EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI+DELHLIGGQ GPVLEVIV+RMRYI+S
Sbjct: 1445 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSRMRYISS 1504
Query: 607 QVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARM 666
QV NKIRIVALSTSLANAKDLGEWIGASSHG+FNFPPGVRPVPLEI IQGVDI++FEARM
Sbjct: 1505 QVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARM 1564
Query: 667 KAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV 726
+AMTKPTYTAI+QHAKN+KPA+VFVP+RK+ RLTAVDLM YS D+ Q FLL +E+
Sbjct: 1565 QAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEEL 1624
Query: 727 EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT 786
+P V I+EE L+ TL G+GYLHEGL+ DQE+V+ LFEAG+I+VCVMSSS+CW PLT
Sbjct: 1625 DPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLT 1684
Query: 787 AHLAT--------GRKM----LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834
AHL GR+ + LLQMMG A RPLLDN+ KCVI CHAP KEYYKKF
Sbjct: 1685 AHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKF 1744
Query: 835 LYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVS 891
LYEAFPVES L HFLHDNFNAE+VAGVIENKQDAVDYLTWTF RL QNPNYYNLQGVS
Sbjct: 1745 LYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVS 1804
Query: 892 HRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLT 951
HRHLSDHLSELVENT+SDLEA++ I +ED+M+L P N GMIASYYYISY TIE FSS L+
Sbjct: 1805 HRHLSDHLSELVENTLSDLEASKCIEVEDEMELSPLNLGMIASYYYISYTTIERFSSLLS 1864
Query: 952 SKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQA 1011
SKTKMKGLLE+L SASEY +PIRPGEE+ VRRLINHQRFSF NPKCTDPHVKANALLQA
Sbjct: 1865 SKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDPHVKANALLQA 1924
Query: 1012 HFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHD 1071
HFS +++ GNL +DQ VLLSA+RLLQAMVDVISSNGWL+LALLAMEVSQMVTQGMWE D
Sbjct: 1925 HFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMWERD 1984
Query: 1072 SMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRF 1131
SMLLQLPHFTKDLAKRCQENPG++IETVF +MSD QLLDIARFCNRF
Sbjct: 1985 SMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQLLDIARFCNRF 2044
Query: 1132 PNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDD 1191
PNID++Y++ SE V G E TLQV+LERD+ GRTE+GPV S RYPK KEEGWWLVV D
Sbjct: 2045 PNIDLTYEIVGSEEVNPGKE-VTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGWWLVVGD 2103
Query: 1192 AKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEA 1251
KTNQLLAIKRVSLQRK + KLDF AP E G+K+YTL FMCDSY+GCDQEYSF+VDVK +
Sbjct: 2104 TKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDVKGS 2163
Query: 1252 G 1252
G
Sbjct: 2164 G 2164
Score = 815 (292.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 153/192 (79%), Positives = 172/192 (89%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ RGDR++VE LF GHVQVLVSTA LAWGVNLPAHTVIIKGTQVYNPEKGAW ELSPLD
Sbjct: 813 LSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLD 872
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQMLGRAGRPQYD +GEGIIITG+SELQYYLSLMN+QLPIESQF+SKLA+ LNAEIVLG
Sbjct: 873 VMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLG 932
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TVQNA+EAC+W+ YTYLY RM+RNP LYGL+P+ L D+ L ER DLIH+AA +LD+NN
Sbjct: 933 TVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKDVVLEERRADLIHSAATILDKNN 992
Query: 179 LVKYGRKSGYFQ 190
LVKY RKSGYFQ
Sbjct: 993 LVKYDRKSGYFQ 1004
Score = 547 (197.6 bits), Expect = 1.9e-44, Sum P(4) = 1.9e-44
Identities = 158/493 (32%), Positives = 254/493 (51%)
Query: 470 VLQLAPTGSGKTICAEFAIL------RNHQRASETGVMRAVYIAPIEALAKQRYCDWERK 523
+L APTG+GKT A IL RN G + VY+AP++AL + + +
Sbjct: 523 ILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNR 582
Query: 524 FGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 583
K+ G+ V EL+ + ++ + +E+ QII++TPEKWD ++R+ R Y Q V L IIDE+
Sbjct: 583 L-KDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEI 641
Query: 584 HLIGGQGGPVLEVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGAS-SHGVFNF 641
HL+ GPVLE IVAR +R I + EN IR+V LS +L N +D+ ++ G+F F
Sbjct: 642 HLLHDNRGPVLESIVARTLRQIETTKEN-IRLVGLSATLPNYEDVALFLRVDLKKGLFKF 700
Query: 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTA 701
RPVPL Q G+ + R + M Y ++ A + L+FV SRK TA
Sbjct: 701 DRSYRPVPLHQQYIGISVKKPLQRFQLMNDLCYQKVLAGAGKHQ-VLIFVHSRKETSKTA 759
Query: 702 VDLMIYSCKDSDQKSAFLLCSA--KEV-EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
+ + +D S FL + ++V H I++ L+ L G H GL++ D+
Sbjct: 760 RAIRD-TAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDR 818
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM--------LILTTL--LQMMG 806
E+V TLF G ++V V ++++ W V L AH + G ++ + L+ L +QM+G
Sbjct: 819 EIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLG 878
Query: 807 HAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQ 866
AGRP D + +I+ +YY + E P+ES L D NAEIV G ++N +
Sbjct: 879 RAGRPQYDQHGEGIIITGYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAR 938
Query: 867 DAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCP 926
+A +L +T+ + L G++ L+ + ++E +DL + + I+ D +L
Sbjct: 939 EACHWLGYTYLYIRMVRNPTLYGLAPDALAKDV--VLEERRADLIHSAATIL-DKNNLV- 994
Query: 927 SNYGMIASYYYIS 939
Y + Y+ ++
Sbjct: 995 -KYDRKSGYFQVT 1006
Score = 462 (167.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 96/114 (84%), Positives = 104/114 (91%)
Query: 195 KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSR 249
KMELAKLLDRVPIP+KE+LEEPSAKINVLLQ YISQLKLEGLSLTSDM SAGRL R
Sbjct: 1058 KMELAKLLDRVPIPIKETLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVR 1117
Query: 250 ALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
AL+EIVLKRGW+QLAEKAL LSKMV KRMWSVQTPLRQF+G+ N+ILM+LEKKD
Sbjct: 1118 ALYEIVLKRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKD 1171
Score = 323 (118.8 bits), Expect = 2.4e-20, Sum P(4) = 2.4e-20
Identities = 89/349 (25%), Positives = 163/349 (46%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
++QM+G AGRP D + +I+ +YY + E P+ES L D NAEIV G
Sbjct: 873 VMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLG 932
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRH---LSDHLSELVENTISDLEATR 914
++N ++A +L +T+ R+ +NP Y L + L + ++L+ + + L+
Sbjct: 933 TVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKDVVLEERRADLIHSAATILDKNN 992
Query: 915 SIIMEDDMDLCP-SNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLP 973
+ + ++ G IASYYYI++ TI ++ L L + + + E+ +
Sbjct: 993 LVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVT 1052
Query: 974 IRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLS 1032
+R E+ + +L++ +P K N LLQA+ S +EG +L D + S
Sbjct: 1053 VRQDEKMELAKLLDRVPIPIKET-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQS 1111
Query: 1033 ASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENP 1092
A RL++A+ +++ GW LA A+ +S+MV + MW + L Q + D+ + ++
Sbjct: 1112 AGRLVRALYEIVLKRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKK- 1170
Query: 1093 GRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQ 1141
+ V+ S + +F ++FP + +S VQ
Sbjct: 1171 ----DLVWERYYDLSAQELGELIRSPKMGKPLHKFIHQFPKVTLSAHVQ 1215
Score = 287 (106.1 bits), Expect = 7.2e-27, Sum P(2) = 7.2e-27
Identities = 55/177 (31%), Positives = 103/177 (58%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
D+++V LF G +QV V +++L WG L AH V++ GTQ Y+ + + ++ D++QM
Sbjct: 1655 DQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQM 1714
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRA RP D+ G+ +I +YY + + P+ESQ L + NAE+V G ++N
Sbjct: 1715 MGRASRPLLDNAGKCVIFCHAPRKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIEN 1774
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVK 181
++A +++ +T++Y R+ +NP Y L V L + +++L+ + L+ + ++
Sbjct: 1775 KQDAVDYLTWTFMYRRLPQNPNYYNLQG-VSHRHLSDHLSELVENTLSDLEASKCIE 1830
Score = 118 (46.6 bits), Expect = 2.0e-84, Sum P(2) = 2.0e-84
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 215 EPSAKINVLLQTYISQLKLEGLSLTSD-----MSAGRLSRALFEIVLKRGWSQLAEKALK 269
+P K N LLQ + S+ + G +L D +SA RL +A+ +++ GW LA A++
Sbjct: 1913 DPHVKANALLQAHFSRQNIGG-NLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAME 1971
Query: 270 LSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPITRTVLRVEL 319
+S+MVT+ MW + L Q ++ + ++ GK I VE+
Sbjct: 1972 VSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENP---GKNIETVFDLVEM 2018
Score = 43 (20.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 185 KSGYFQSEKIKMELAKLLDRV 205
K+ F++ + KME+ KLL+++
Sbjct: 152 KNDAFRNPEKKMEIEKLLNKI 172
Score = 39 (18.8 bits), Expect = 1.9e-44, Sum P(4) = 1.9e-44
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 400 QLLPVTALQNPSYEALYQNYKLFNPIQTQVF-AVLYNTEDNVLVAA 444
+L+ +T + + + A ++ + N +Q++V+ L+ E N+L+ A
Sbjct: 484 KLVKITEMPDWAQPA-FKGMQQLNRVQSKVYDTALFKAE-NILLCA 527
Score = 37 (18.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 291 IPNEILMKLEKKDFFLGKPITRTVLRV 317
+ +++LM L+ + F L K + R L+V
Sbjct: 315 VEDKLLMHLQYEKFSLVKFLLRNRLKV 341
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 3214 (1136.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 648/964 (67%), Positives = 759/964 (78%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PI+R+VL+VELT+TPDF WDDK + YVE FW+IVEDNDG+ ILHHEYFL KK+ +EDH
Sbjct: 1216 QPISRSVLQVELTVTPDFHWDDKANKYVEPFWIIVEDNDGEKILHHEYFLFKKRVIDEDH 1275
Query: 368 SLNFTVPIYEPLPPQHLI--LPEKF-PPPTEL-LDLQLLPVTALQNPSYEALYQNYKLFN 423
+LNFTVPI EP+PPQ+ I + +K+ PT L + + L + P E L
Sbjct: 1276 TLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLILPEKYPPPTELLD-----LQ 1330
Query: 424 PIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSGKTI 482
P+ V A L N L F P + ++ L N V+ APTGSGKTI
Sbjct: 1331 PLP--VMA-LRNPSYETLYQDFKH---FN--PVQTQVFTVLYNTSDNVVVAAPTGSGKTI 1382
Query: 483 CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
CAEFAILRNH ++ MR VYIAP+EA+AK+++ DWE+KFGK LG+ VVELT ET +D
Sbjct: 1383 CAEFAILRNHLEGPDSA-MRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETLLD 1441
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
LKLLEKGQIIISTPEKWDALSRRWKQRKY+QQVSLFI+DELHLIGGQGG VLEVIV+RMR
Sbjct: 1442 LKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSRMR 1501
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
YI+SQV NKIRIVALSTSLANAKDLGEWIGASS GVFNFPP VRPVPLEI I GVDI +F
Sbjct: 1502 YISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHGVDILSF 1561
Query: 663 EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
EARM+AMTKPTYTAI+QHAKN+KPA+VFVP+RK+ RLTAVDL+ YS D+ + FLL +
Sbjct: 1562 EARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSPDFLLGN 1621
Query: 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
+E+EP + I EE L+ TLR G+GYLHEGL+ DQE+V+ LFEAG+I+VCVMSSS+CW
Sbjct: 1622 LEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWG 1681
Query: 783 VPLTAHLAT--------GRKM----LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830
PL AHL GR+ ++ LLQMMG RPLLD++ KCVI CHAP KEY
Sbjct: 1682 TPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEY 1741
Query: 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
YKKFLYEA PVESHL HFLHDNFNAE+VA VIENKQDAVDYLTW+F RL QNPNYYNL
Sbjct: 1742 YKKFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFMYRRLPQNPNYYNL 1801
Query: 888 QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFS 947
GVSHRHLSDHLSELVENT+SDLE ++ I +++++DL P N GMIASYYYI+Y TIE FS
Sbjct: 1802 LGVSHRHLSDHLSELVENTLSDLEVSKCIEIDNELDLSPLNLGMIASYYYINYTTIERFS 1861
Query: 948 SSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANA 1007
S L SKTKMKGLLE+L SASEY +PIRPGEE+ VRRLINHQRFSF NP+CTDP VK +A
Sbjct: 1862 SLLASKTKMKGLLEILTSASEYDLIPIRPGEEDAVRRLINHQRFSFQNPRCTDPRVKTSA 1921
Query: 1008 LLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1067
LLQAHFS + + GNL +DQ +VLLSA+RLLQAMVDVISSNG L+LALLAMEVSQMVTQGM
Sbjct: 1922 LLQAHFSRQKISGNLVMDQCEVLLSATRLLQAMVDVISSNGCLNLALLAMEVSQMVTQGM 1981
Query: 1068 WEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARF 1127
W+ DSMLLQLPHFTKDLAKRC ENPG +IET+F QMSD QLLDIARF
Sbjct: 1982 WDRDSMLLQLPHFTKDLAKRCHENPGNNIETIFDLVEMEDDKRQELLQMSDAQLLDIARF 2041
Query: 1128 CNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWL 1187
CNRFPNID++Y++ S V + G+D TLQV+LERD+ GRTE+GPV + RYPK KEEGWWL
Sbjct: 2042 CNRFPNIDLTYEIVGSNEV-SPGKDITLQVLLERDMEGRTEVGPVDAPRYPKTKEEGWWL 2100
Query: 1188 VVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVD 1247
VV +AKTNQL+AIKR+SLQRK++ KL+FA P E G+K+YTL FMCDSY+GCDQEYSFTVD
Sbjct: 2101 VVGEAKTNQLMAIKRISLQRKAQVKLEFAVPTETGEKSYTLYFMCDSYLGCDQEYSFTVD 2160
Query: 1248 VKEA 1251
VK++
Sbjct: 2161 VKDS 2164
Score = 755 (270.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 140/192 (72%), Positives = 168/192 (87%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R DR++VE+ F G++QVL+STA LAWGVNLPAHTVIIKGTQVYNPE+G W ELSPLD
Sbjct: 814 LTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLD 873
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQM+GRAGRPQYD GEGIIITG+S+LQYYL LMN+QLPIESQF+SKLA+ LNAEIVLG
Sbjct: 874 VMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLG 933
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
T+QNA+EAC+W+ YTYLY RM+RNP LYG+SP+ L D+ L ER DLIH+AA +LD+NN
Sbjct: 934 TIQNAREACHWLGYTYLYVRMVRNPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNN 993
Query: 179 LVKYGRKSGYFQ 190
L+KY RKSG+FQ
Sbjct: 994 LIKYDRKSGHFQ 1005
Score = 528 (190.9 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 152/473 (32%), Positives = 247/473 (52%)
Query: 470 VLQLAPTGSGKTICAEFAILRN---HQRASET---GVMRAVYIAPIEALAKQRYCDWERK 523
+L APTG+GKT A IL + T G + VY+AP++AL + ++
Sbjct: 524 ILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQR 583
Query: 524 FGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 583
K+ G+ V EL+ + ++ + +++ QII++TPEKWD ++R+ R Y Q V L IIDE+
Sbjct: 584 L-KDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEI 642
Query: 584 HLIGGQGGPVLEVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGAS-SHGVFNF 641
HL+ GPVLE IVAR +R I S E+ IR+V LS +L N D+ ++ +G+F F
Sbjct: 643 HLLDDNRGPVLESIVARTLRQIESTKEH-IRLVGLSATLPNCDDVASFLRVDLKNGLFIF 701
Query: 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTA 701
RPVPL Q G+++ R + M Y ++ A + L+FV SRK TA
Sbjct: 702 DRSYRPVPLGQQYIGINVKKPLRRFQLMNDICYQKVVAVAGKHQ-VLIFVHSRKETAKTA 760
Query: 702 VDLMIYSCKDSDQKSAFLL--CSAKEVEPHVS-IIQEEMLRATLRLGVGYLHEGLNKSDQ 758
+ + +D S FL ++E+ ++ +++ L+ L G H GL ++D+
Sbjct: 761 RAIRD-TAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDR 819
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM--------LILTTL--LQMMG 806
E+V F G ++V + ++++ W V L AH + G ++ + L+ L +QM+G
Sbjct: 820 EIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIG 879
Query: 807 HAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQ 866
AGRP D + +I+ +YY + + E P+ES L D NAEIV G I+N +
Sbjct: 880 RAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAR 939
Query: 867 DAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIME 919
+A +L +T+ + L GVS L+ L L+E +DL + + I++
Sbjct: 940 EACHWLGYTYLYVRMVRNPTLYGVSPDALAKDL--LLEERRADLIHSAATILD 990
Score = 446 (162.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 94/114 (82%), Positives = 101/114 (88%)
Query: 195 KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSR 249
KMELAKLLDRVPIPVKE+LE+PSAKINVLLQ YIS+LKLEGLSLTSDM SAGRL R
Sbjct: 1059 KMELAKLLDRVPIPVKETLEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGRLLR 1118
Query: 250 ALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A+FEIVLKRGW+QL++KAL LSKMV KRMWSVQTPL QF GIP EILMKLEK D
Sbjct: 1119 AIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKND 1172
Score = 346 (126.9 bits), Expect = 4.7e-26, Sum P(2) = 4.7e-26
Identities = 92/304 (30%), Positives = 155/304 (50%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
++QM+G AGRP D + +I+ +YY + + E P+ES L D NAEIV G
Sbjct: 874 VMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLG 933
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
I+N ++A +L +T+ R+ +NP Y GVS L+ L L+E +DL + + I
Sbjct: 934 TIQNAREACHWLGYTYLYVRMVRNPTLY---GVSPDALAKDL--LLEERRADLIHSAATI 988
Query: 918 MEDD----MDLCPSNY-----GMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
++ + D ++ G IASYYYIS+ TI ++ +L L + + + E
Sbjct: 989 LDKNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKPTMNDIELCRLFSLSEE 1048
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQE 1027
+ + +R E+ + +L++ DP K N LLQ + S +EG +L D
Sbjct: 1049 FKYVTVRQDEKMELAKLLDRVPIP-VKETLEDPSAKINVLLQVYISKLKLEGLSLTSDMV 1107
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087
+ SA RLL+A+ +++ GW L+ A+ +S+MV + MW + L Q P K++ +
Sbjct: 1108 YITQSAGRLLRAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPLWQFPGIPKEILMK 1167
Query: 1088 CQEN 1091
++N
Sbjct: 1168 LEKN 1171
Score = 255 (94.8 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 50/177 (28%), Positives = 99/177 (55%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
D+++V LF G +QV V +++L WG L AH V++ GT Y+ + + ++ +++QM
Sbjct: 1656 DQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQM 1715
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GR RP D G+ +I +YY + + LP+ES L + NAE+V ++N
Sbjct: 1716 MGRGSRPLLDDAGKCVIFCHAPRKEYYKKFLYEALPVESHLQHFLHDNFNAEVVARVIEN 1775
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVK 181
++A +++ ++++Y R+ +NP Y L V L + +++L+ + L+ + ++
Sbjct: 1776 KQDAVDYLTWSFMYRRLPQNPNYYNLLG-VSHRHLSDHLSELVENTLSDLEVSKCIE 1831
Score = 105 (42.0 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 215 EPSAKINVLLQTYISQLKLEGLSLTSD-----MSAGRLSRALFEIVLKRGWSQLAEKALK 269
+P K + LLQ + S+ K+ G +L D +SA RL +A+ +++ G LA A++
Sbjct: 1914 DPRVKTSALLQAHFSRQKISG-NLVMDQCEVLLSATRLLQAMVDVISSNGCLNLALLAME 1972
Query: 270 LSKMVTKRMWSVQTPLRQ 287
+S+MVT+ MW + L Q
Sbjct: 1973 VSQMVTQGMWDRDSMLLQ 1990
Score = 50 (22.7 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 388 EKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
+KF +L+ + LP A P++ + Q N +Q++V+ DN+L+ A
Sbjct: 478 KKFDSNEKLVKISDLPEWA--QPAFRGMQQ----LNRVQSKVYGTALFKADNILLCA 528
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 2463 (872.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 502/964 (52%), Positives = 662/964 (68%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITR+ L+VELTITPDFQWD+KVHG E FW++VED D + ILHHEYFLLK +Y +++H
Sbjct: 1191 QPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEH 1250
Query: 368 SLNFTVPIYEPLPPQHLI--LPEKFPP-PTEL-LDLQLLPVTALQNPSYEALYQNYKLFN 423
+ F VP++EPLPPQ+ I + +++ T+L + + L + P E L +
Sbjct: 1251 LITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVS 1310
Query: 424 PIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSGKTI 482
++ F LY +D K F P + ++ + N V APTGSGKTI
Sbjct: 1311 ALRNSAFESLY--QD---------KFPFFN-PIQTQVFNTVYNSDDNVFVGAPTGSGKTI 1358
Query: 483 CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
CAEFAILR ++SE G R VYI P+EALA+Q Y DW KF L VV LT ET+ D
Sbjct: 1359 CAEFAILRMLLQSSE-G--RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1415
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
LKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI +RMR
Sbjct: 1416 LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1475
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
YI+SQ+E IRIVALS+SL+NAKD+ W+G S+ FNF P VRPVPLE+ IQG +I++
Sbjct: 1476 YISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1535
Query: 663 EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
+ R+ +M KP Y AI +H+ +KP +VFVPSRK RLTA+D++ +C Q+ FL C+
Sbjct: 1536 QTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILT-TCAADIQRQRFLHCT 1593
Query: 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
K++ P++ + + L+ TL GVGYLHEGL+ ++ +V LF +G I+V V S S+CW
Sbjct: 1594 EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWG 1653
Query: 783 VPLTAHLA--------TGRKMLILT----TLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830
+ + AHL G+ + +LQM+GHA RPL D+ +CVI+C K++
Sbjct: 1654 MNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF 1713
Query: 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
+KKFLYE PVESHL H +HD+FNAEIV IENKQDAVDYLTWTF R+TQNPNYYNL
Sbjct: 1714 FKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1773
Query: 888 QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFS 947
QG+SHRHLSDHLSELVE T+SDLE ++ I +ED+MD+ P N GMIA+YYYI+Y TIE FS
Sbjct: 1774 QGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFS 1833
Query: 948 SSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANA 1007
SL +KTK++GL+E++++A+EY +PIR E+ L+R+L NPK DPHVK N
Sbjct: 1834 MSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNL 1893
Query: 1008 LLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1067
LLQAH S + L+ D E++L A RL+QA VDV+SSNGWLS AL AME++QMVTQ M
Sbjct: 1894 LLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAM 1953
Query: 1068 WEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARF 1127
W DS L QLPHFT + KRC + + +E+VF Q++D Q+ D+ARF
Sbjct: 1954 WSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADVARF 2010
Query: 1128 CNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWL 1187
CNR+PNI++SY+V D +++R+GG L V LER+ GPV + +P+ +EEGWW+
Sbjct: 2011 CNRYPNIELSYEVVDKDSIRSGGPVVVL-VQLERE---EEVTGPVIAPLFPQKREEGWWV 2066
Query: 1188 VVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVD 1247
V+ DAK+N L++IKR++LQ+K++ KLDF AP G YTL FM D+YMGCDQEY F+VD
Sbjct: 2067 VIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHN-YTLYFMSDAYMGCDQEYKFSVD 2125
Query: 1248 VKEA 1251
VKEA
Sbjct: 2126 VKEA 2129
Score = 726 (260.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 152/244 (62%), Positives = 184/244 (75%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL LD
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 848
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QMLGRAGRPQYD+ GEGI+IT H ELQYYLSL+NQQLPIESQ VSKL ++LNAEIVLG
Sbjct: 849 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 908
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
VQNAK+A NW+ Y YLY RMLR+P LYG+S + L D L +R DL+HTAA +LD+NN
Sbjct: 909 NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN 968
Query: 179 LVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKL-EGLS 237
LVKY +K+G FQ EL ++ I ++++ N LL+ +S+++L S
Sbjct: 969 LVKYDKKTGNFQVT----ELGRIASHYYI-TNDTVQT----YNQLLKPTLSEIELFRVFS 1019
Query: 238 LTSD 241
L+S+
Sbjct: 1020 LSSE 1023
Score = 519 (187.8 bits), Expect = 5.2e-46, Sum P(3) = 5.2e-46
Identities = 154/484 (31%), Positives = 237/484 (48%)
Query: 462 AALPNIILVLQLAPTGSGKTICAEFAILRN---HQRASET-GV--MRAVYIAPIEALAKQ 515
AAL +L APTG+GKT A +LR H T V + +YIAP+ +L ++
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 516 RYCDWERKFGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 572
FGK L G+ V ELT + + + + QII+ TPEKWD ++R+ +R Y
Sbjct: 551 MV----GSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYT 606
Query: 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG 632
Q V L I+DE+HL+ GPVLE +VAR + +R++ LS +L N +D+ ++
Sbjct: 607 QLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLR 666
Query: 633 AS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVF 690
+ G+F F RPVPLE G+ R + M + Y IM+HA KN+ LVF
Sbjct: 667 VDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ--VLVF 724
Query: 691 VPSRKYARLTAVDLMIYSCKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVG 747
V SRK TA + C + D FL S + + + L+ L G
Sbjct: 725 VHSRKETGKTARAIRDM-CLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 748 YLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM---------- 795
H G+ + D+ +V LF I+V V ++++ W V L AH + G ++
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 796 LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNA 855
L +LQM+G AGRP D + +++ +YY L + P+ES + L D NA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 856 EIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRS 915
EIV G ++N +DAV++L + + + L G+SH L L++ DL T +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKG--DPLLDQRRLDLVHTAA 961
Query: 916 IIME 919
++++
Sbjct: 962 LMLD 965
Score = 388 (141.6 bits), Expect = 2.0e-294, Sum P(2) = 2.0e-294
Identities = 85/153 (55%), Positives = 105/153 (68%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGR 246
E+ K+EL KLL+RVPIPVKES+EEPSAKINVLLQ +ISQLKLEG +L +DM SAGR
Sbjct: 1031 EEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGR 1090
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFL 306
L RA+FEIVL RGW+QL +K L L KM+ KRMW PLRQF +P E++ K+EKK+F
Sbjct: 1091 LMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPF 1150
Query: 307 GKPITRTVLRV-ELTITPDFQWDDKVHGYVELF 338
+ + EL P + +H YV LF
Sbjct: 1151 ERLYDLNHNEIGELIRMP--KMGKTIHKYVHLF 1181
Score = 322 (118.4 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 92/354 (25%), Positives = 167/354 (47%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+LQM+G AGRP D + +++ +YY L + P+ES + L D NAEIV G
Sbjct: 849 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 908
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
++N +DAV++L + + R+ ++P Y G+SH L L++ DL T +++
Sbjct: 909 NVQNAKDAVNWLGYAYLYIRMLRSPTLY---GISHDDLKG--DPLLDQRRLDLVHTAALM 963
Query: 918 MEDD----MDLCPSNY-----GMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
++ + D N+ G IAS+YYI+ T++ ++ L L V + +SE
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQE 1027
+ + +R E+ +++L+ +P K N LLQA S +EG L D
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIP-VKESIEEPSAKINVLLQAFISQLKLEGFALMADMV 1082
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087
V SA RL++A+ +++ + GW L + + +M+ + MW+ L Q +++ K+
Sbjct: 1083 YVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKK 1142
Query: 1088 CQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQ 1141
E E ++ +M I ++ + FP +++S +Q
Sbjct: 1143 I-EKKNFPFERLYDLNHNEIGELIRMPKMGKT----IHKYVHLFPKLELSVHLQ 1191
Score = 297 (109.6 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 59/176 (33%), Positives = 105/176 (59%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+LVE LF G +QV+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM
Sbjct: 1628 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQM 1687
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+G A RP D G +I+ S+ ++ + + LP+ES + + NAEIV T++N
Sbjct: 1688 VGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIEN 1747
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +++ +T+LY RM +NP Y L + L + +++L+ + L+++ +
Sbjct: 1748 KQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHLSELVEQTLSDLEQSKCI 1802
Score = 125 (49.1 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 198 LAKLLDRVPIPVKE-SLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRAL 251
L +L +VP + +P K N+LLQ ++S+++L L SD A RL +A
Sbjct: 1868 LRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQAC 1926
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+++ GW A A++L++MVT+ MWS + L+Q +E + + K
Sbjct: 1927 VDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDK 1977
Score = 75 (31.5 bits), Expect = 5.2e-46, Sum P(3) = 5.2e-46
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 400 QLLPVTALQNPSY-EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
QLLPV L P Y +A ++ +K N IQ++++ T++N+L+ A
Sbjct: 460 QLLPVEKL--PKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCA 503
Score = 40 (19.1 bits), Expect = 5.2e-46, Sum P(3) = 5.2e-46
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1190 DDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKT 1225
DD K + LL +R+ L + LD V+ KKT
Sbjct: 941 DDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKT 976
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 2455 (869.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 500/964 (51%), Positives = 659/964 (68%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITR+ L+VELTITPDFQWD+KVHG E FW++VED D + ILHHEYFLLK +Y +++H
Sbjct: 1191 QPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEH 1250
Query: 368 SLNFTVPIYEPLPPQHLI--LPEKFPP-PTEL-LDLQLLPVTALQNPSYEALYQNYKLFN 423
+ F VP++EPLPPQ+ I + +++ T+L + + L + P E L +
Sbjct: 1251 LITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVS 1310
Query: 424 PIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSGKTI 482
++ F LY +D K F P + ++ + N V APTGSGKTI
Sbjct: 1311 ALRNSAFESLY--QD---------KFPFFN-PIQTQVFNTVYNSDDNVFVGAPTGSGKTI 1358
Query: 483 CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
CAEFAILR + SE G R VYI P+EALA+Q Y DW KF L VV LT ET+ D
Sbjct: 1359 CAEFAILRMLLQNSE-G--RCVYITPMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTD 1415
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
LKLL KG +I+STPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI +RMR
Sbjct: 1416 LKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1475
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
YI+SQ+E IRIVALS+SL+NAKD+ W+G S+ FNF P VRPVPLE+ IQG +I++
Sbjct: 1476 YISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1535
Query: 663 EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
+ R+ +M KP Y AI +H+ +KP +VFVPSRK RLTA+D++ +C Q+ FL C+
Sbjct: 1536 QTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILT-TCAADIQRQRFLHCT 1593
Query: 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
K++ P++ + + L+ TL GVGYLHEGL+ ++ +V LF +G I+V V S S+CW
Sbjct: 1594 EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPLERRLVEQLFSSGAIQVVVASRSLCWG 1653
Query: 783 VPLTAHLA--------TGRKMLILT----TLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830
+ + AHL G+ + +LQM+GHA RPL D+ +CVI+C K++
Sbjct: 1654 LNVAAHLVIIMDTQYYNGKTHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF 1713
Query: 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
+KKFLYE PVESHL H +HD+FNAEIV IENKQDAVDYLTWTF R+TQNPNYYNL
Sbjct: 1714 FKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1773
Query: 888 QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFS 947
QG+SHRHLSDHLSELVE T+SDLE ++ I +ED+MD+ P N GMIA+YYYI+Y TIE FS
Sbjct: 1774 QGISHRHLSDHLSELVEQTLSDLEQSKCISVEDEMDVAPLNLGMIAAYYYINYTTIELFS 1833
Query: 948 SSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANA 1007
SL +KTK++GL+E++++A+EY +PIR E+ L+R+L NPK DPHVK N
Sbjct: 1834 MSLNAKTKVRGLIEIISNAAEYENIPIRHHEDSLLRQLAQKVPHKLNNPKFNDPHVKTNL 1893
Query: 1008 LLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1067
LLQAH S + L+ D E++L A RL+QA VDV+SSNGWLS AL AME++QM TQ M
Sbjct: 1894 LLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMATQAM 1953
Query: 1068 WEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARF 1127
W DS L QLPHFT + KRC + + +E+VF Q+SD Q+ D+ARF
Sbjct: 1954 WSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLSDSQIADVARF 2010
Query: 1128 CNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWL 1187
CNR+PNI++SY+V D + +R+GG L V LER+ GPV + +P+ +EEGWW+
Sbjct: 2011 CNRYPNIELSYEVVDKDAIRSGGPVVVL-VQLERE---EEVTGPVIAPLFPQKREEGWWV 2066
Query: 1188 VVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVD 1247
V+ DAK+N L++IKR++LQ+K++ KLDF AP G YTL FM D+YMGCDQEY F+VD
Sbjct: 2067 VIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHN-YTLYFMSDAYMGCDQEYKFSVD 2125
Query: 1248 VKEA 1251
VKEA
Sbjct: 2126 VKEA 2129
Score = 725 (260.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 151/244 (61%), Positives = 184/244 (75%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL LD
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 848
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QMLGRAGRPQYD+ GEGI+IT H ELQYYLSL+NQQLPIESQ VSKL ++LNAE+VLG
Sbjct: 849 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEVVLG 908
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
VQNAK+A NW+ Y YLY RMLR+P LYG+S + L D L +R DL+HTAA +LD+NN
Sbjct: 909 NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN 968
Query: 179 LVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKL-EGLS 237
LVKY +K+G FQ EL ++ I ++++ N LL+ +S+++L S
Sbjct: 969 LVKYDKKTGNFQVT----ELGRIASHYYI-TNDTVQT----YNQLLKPTLSEIELFRVFS 1019
Query: 238 LTSD 241
L+S+
Sbjct: 1020 LSSE 1023
Score = 517 (187.1 bits), Expect = 8.7e-46, Sum P(3) = 8.7e-46
Identities = 153/484 (31%), Positives = 237/484 (48%)
Query: 462 AALPNIILVLQLAPTGSGKTICAEFAILRN---HQRASET-GV--MRAVYIAPIEALAKQ 515
AAL +L APTG+GKT A +LR H T V + +YIAP+ +L ++
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 516 RYCDWERKFGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 572
FGK L G+ V ELT + + + + QII+ TPEKWD ++R+ +R Y
Sbjct: 551 MV----GSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYT 606
Query: 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG 632
Q V L I+DE+HL+ GPVLE +VAR + +R++ LS +L N +D+ ++
Sbjct: 607 QLVRLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLR 666
Query: 633 AS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVF 690
+ G+F F RPVPLE G+ R + M + Y IM+HA KN+ LVF
Sbjct: 667 VDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ--VLVF 724
Query: 691 VPSRKYARLTAVDLMIYSCKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVG 747
V SRK TA + C + D FL S + + + L+ L G
Sbjct: 725 VHSRKETGKTARAIRDM-CLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 748 YLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM---------- 795
H G+ + D+ +V LF I+V V ++++ W V L AH + G ++
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 796 LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNA 855
L +LQM+G AGRP D + +++ +YY L + P+ES + L D NA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 856 EIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRS 915
E+V G ++N +DAV++L + + + L G+SH L L++ DL T +
Sbjct: 904 EVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKG--DPLLDQRRLDLVHTAA 961
Query: 916 IIME 919
++++
Sbjct: 962 LMLD 965
Score = 388 (141.6 bits), Expect = 1.4e-293, Sum P(2) = 1.4e-293
Identities = 85/153 (55%), Positives = 105/153 (68%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGR 246
E+ K+EL KLL+RVPIPVKES+EEPSAKINVLLQ +ISQLKLEG +L +DM SAGR
Sbjct: 1031 EEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGR 1090
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFL 306
L RA+FEIVL RGW+QL +K L L KM+ KRMW PLRQF +P E++ K+EKK+F
Sbjct: 1091 LMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPF 1150
Query: 307 GKPITRTVLRV-ELTITPDFQWDDKVHGYVELF 338
+ + EL P + +H YV LF
Sbjct: 1151 ERLYDLNHNEIGELIRMP--KMGKTIHKYVHLF 1181
Score = 321 (118.1 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 91/354 (25%), Positives = 167/354 (47%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+LQM+G AGRP D + +++ +YY L + P+ES + L D NAE+V G
Sbjct: 849 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEVVLG 908
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
++N +DAV++L + + R+ ++P Y G+SH L L++ DL T +++
Sbjct: 909 NVQNAKDAVNWLGYAYLYIRMLRSPTLY---GISHDDLKG--DPLLDQRRLDLVHTAALM 963
Query: 918 MEDD----MDLCPSNY-----GMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
++ + D N+ G IAS+YYI+ T++ ++ L L V + +SE
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQE 1027
+ + +R E+ +++L+ +P K N LLQA S +EG L D
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIP-VKESIEEPSAKINVLLQAFISQLKLEGFALMADMV 1082
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087
V SA RL++A+ +++ + GW L + + +M+ + MW+ L Q +++ K+
Sbjct: 1083 YVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKK 1142
Query: 1088 CQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQ 1141
E E ++ +M I ++ + FP +++S +Q
Sbjct: 1143 I-EKKNFPFERLYDLNHNEIGELIRMPKMGKT----IHKYVHLFPKLELSVHLQ 1191
Score = 299 (110.3 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 59/176 (33%), Positives = 105/176 (59%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+LVE LF G +QV+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM
Sbjct: 1628 ERRLVEQLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDTQYYNGKTHAYVDYPIYDVLQM 1687
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+G A RP D G +I+ S+ ++ + + LP+ES + + NAEIV T++N
Sbjct: 1688 VGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIEN 1747
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +++ +T+LY RM +NP Y L + L + +++L+ + L+++ +
Sbjct: 1748 KQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHLSELVEQTLSDLEQSKCI 1802
Score = 121 (47.7 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 33/111 (29%), Positives = 57/111 (51%)
Query: 198 LAKLLDRVPIPVKE-SLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRAL 251
L +L +VP + +P K N+LLQ ++S+++L L SD A RL +A
Sbjct: 1868 LRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQAC 1926
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+++ GW A A++L++M T+ MWS + L+Q +E + + K
Sbjct: 1927 VDVLSSNGWLSPALAAMELAQMATQAMWSKDSYLKQLPHFTSEHIKRCTDK 1977
Score = 75 (31.5 bits), Expect = 8.7e-46, Sum P(3) = 8.7e-46
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 400 QLLPVTALQNPSY-EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
QLLPV L P Y +A ++ +K N IQ++++ T++N+L+ A
Sbjct: 460 QLLPVEKL--PKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCA 503
Score = 40 (19.1 bits), Expect = 8.7e-46, Sum P(3) = 8.7e-46
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1190 DDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKT 1225
DD K + LL +R+ L + LD V+ KKT
Sbjct: 941 DDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKT 976
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 2453 (868.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 503/967 (52%), Positives = 662/967 (68%)
Query: 308 KPITRTVLRVELTITPDFQWDDK---VHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTE 364
+PITR+ L+VELTITPDFQWD+K VHG E FW++VED D + ILHHEYFLLK +Y +
Sbjct: 1191 QPITRSTLKVELTITPDFQWDEKARLVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQ 1250
Query: 365 EDHSLNFTVPIYEPLPPQHLI--LPEKFPP-PTEL-LDLQLLPVTALQNPSYEALYQNYK 420
++H + F VP++EPLPPQ+ I + +++ T+L + + L + P E L
Sbjct: 1251 DEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPL 1310
Query: 421 LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSG 479
+ ++ F LY +D K F P + ++ + N V APTGSG
Sbjct: 1311 PVSALRNSAFESLY--QD---------KFPFFN-PIQTQVFNTVYNSDDNVFVGAPTGSG 1358
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KTICAEFAILR + SE G R VYI P+EALA+Q Y DW KF L VV LT ET
Sbjct: 1359 KTICAEFAILRMLLQNSE-G--RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGET 1415
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
+ DLKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI +
Sbjct: 1416 STDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICS 1475
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
RMRYI+SQ+E IRIVALS+SL+NAKD+ W+G S+ FNF P VRPVPLE+ IQG +I
Sbjct: 1476 RMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNI 1535
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
++ + R+ +M KP Y AI +H+ +KP +VFVPSRK RLTA+D++ +C Q+ FL
Sbjct: 1536 SHTQTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILT-TCAADIQRQRFL 1593
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C+ K++ P++ + + L+ TL GVGYLHEGL+ ++ +V LF +G I+V V S S+
Sbjct: 1594 HCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSL 1653
Query: 780 CWEVPLTAHLA--------TGRKMLILT----TLLQMMGHAGRPLLDNSEKCVILCHAPH 827
CW + + AHL G+ + +LQM+GHA RPL D+ +CVI+C
Sbjct: 1654 CWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK 1713
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNY 884
K+++KKFLYE PVESHL H +HD+FNAEIV IENKQDAVDYLTWTF R+TQNPNY
Sbjct: 1714 KDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNY 1773
Query: 885 YNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIE 944
YNLQG+SHRHLSDHLSELVE T+SDLE ++ I +ED+MD+ P N GMIA+YYYI+Y TIE
Sbjct: 1774 YNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIE 1833
Query: 945 CFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVK 1004
FS SL +KTK++GL+E++++A+EY +PIR E+ L+R+L NPK DPHVK
Sbjct: 1834 LFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVK 1893
Query: 1005 ANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVT 1064
N LLQAH S + L+ D E++L A RL+QA VDV+SSNGWLS AL AME++QMVT
Sbjct: 1894 TNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVT 1953
Query: 1065 QGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDI 1124
Q MW DS L QLPHFT + KRC + + +E+VF Q++D Q+ D+
Sbjct: 1954 QAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADV 2010
Query: 1125 ARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEG 1184
ARFCNR+PNI++SY+V D +++R+GG L V LER+ GPV + +P+ +EEG
Sbjct: 2011 ARFCNRYPNIELSYEVVDKDSIRSGGPVVVL-VQLERE---EEVTGPVIAPLFPQKREEG 2066
Query: 1185 WWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSF 1244
WW+V+ DAK+N L++IKR++LQ+K++ KLDF AP GG YTL FM D+YMGCDQEY F
Sbjct: 2067 WWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGGHN-YTLYFMSDAYMGCDQEYKF 2125
Query: 1245 TVDVKEA 1251
+VDVKEA
Sbjct: 2126 SVDVKEA 2132
Score = 726 (260.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 152/244 (62%), Positives = 184/244 (75%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL LD
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 848
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QMLGRAGRPQYD+ GEGI+IT H ELQYYLSL+NQQLPIESQ VSKL ++LNAEIVLG
Sbjct: 849 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 908
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
VQNAK+A NW+ Y YLY RMLR+P LYG+S + L D L +R DL+HTAA +LD+NN
Sbjct: 909 NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN 968
Query: 179 LVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKL-EGLS 237
LVKY +K+G FQ EL ++ I ++++ N LL+ +S+++L S
Sbjct: 969 LVKYDKKTGNFQVT----ELGRIASHYYI-TNDTVQT----YNQLLKPTLSEIELFRVFS 1019
Query: 238 LTSD 241
L+S+
Sbjct: 1020 LSSE 1023
Score = 518 (187.4 bits), Expect = 3.6e-47, Sum P(2) = 3.6e-47
Identities = 153/484 (31%), Positives = 237/484 (48%)
Query: 462 AALPNIILVLQLAPTGSGKTICAEFAILRN---HQRASET-GV--MRAVYIAPIEALAKQ 515
AAL +L APTG+GKT A +LR H T V + +YIAP+ +L ++
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 516 RYCDWERKFGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 572
FGK L G+ V ELT + + + + QII+ TPEKWD ++R+ +R Y
Sbjct: 551 MV----GSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYT 606
Query: 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG 632
Q V L ++DE+HL+ GPVLE +VAR + +R++ LS +L N +D+ ++
Sbjct: 607 QLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLR 666
Query: 633 AS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVF 690
+ G+F F RPVPLE G+ R + M + Y IM+HA KN+ LVF
Sbjct: 667 VDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ--VLVF 724
Query: 691 VPSRKYARLTAVDLMIYSCKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVG 747
V SRK TA + C + D FL S + + + L+ L G
Sbjct: 725 VHSRKETGKTARAIRDM-CLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 748 YLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM---------- 795
H G+ + D+ +V LF I+V V ++++ W V L AH + G ++
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 796 LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNA 855
L +LQM+G AGRP D + +++ +YY L + P+ES + L D NA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 856 EIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRS 915
EIV G ++N +DAV++L + + + L G+SH L L++ DL T +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKG--DPLLDQRRLDLVHTAA 961
Query: 916 IIME 919
++++
Sbjct: 962 LMLD 965
Score = 388 (141.6 bits), Expect = 2.3e-293, Sum P(2) = 2.3e-293
Identities = 85/153 (55%), Positives = 105/153 (68%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGR 246
E+ K+EL KLL+RVPIPVKES+EEPSAKINVLLQ +ISQLKLEG +L +DM SAGR
Sbjct: 1031 EEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGR 1090
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFL 306
L RA+FEIVL RGW+QL +K L L KM+ KRMW PLRQF +P E++ K+EKK+F
Sbjct: 1091 LMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPF 1150
Query: 307 GKPITRTVLRV-ELTITPDFQWDDKVHGYVELF 338
+ + EL P + +H YV LF
Sbjct: 1151 ERLYDLNHNEIGELIRMP--KMGKTIHKYVHLF 1181
Score = 332 (121.9 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 111/458 (24%), Positives = 205/458 (44%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+LQM+G AGRP D + +++ +YY L + P+ES + L D NAEIV G
Sbjct: 849 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 908
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
++N +DAV++L + + R+ ++P Y G+SH L L++ DL T +++
Sbjct: 909 NVQNAKDAVNWLGYAYLYIRMLRSPTLY---GISHDDLKG--DPLLDQRRLDLVHTAALM 963
Query: 918 MEDD----MDLCPSNY-----GMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
++ + D N+ G IAS+YYI+ T++ ++ L L V + +SE
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQE 1027
+ + +R E+ +++L+ +P K N LLQA S +EG L D
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIP-VKESIEEPSAKINVLLQAFISQLKLEGFALMADMV 1082
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087
V SA RL++A+ +++ + GW L + + +M+ + MW+ L Q +++ K+
Sbjct: 1083 YVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKK 1142
Query: 1088 CQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVR 1147
E E ++ +M I ++ + FP +++S +Q
Sbjct: 1143 I-EKKNFPFERLYDLNHNEIGELIRMPKMGKT----IHKYVHLFPKLELSVHLQPITR-- 1195
Query: 1148 AGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQR 1207
+TL+V L + + R E +W++V+D + +L + L+
Sbjct: 1196 -----STLKVELTITPDFQWD----EKARLVHGSSEAFWILVEDVDSEVILHHEYFLLKA 1246
Query: 1208 K---SRAKLDFAAPV-EGGKKTYTLDFMCDSYMGCDQE 1241
K + F PV E Y + + D ++ C+ +
Sbjct: 1247 KYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQ 1284
Score = 297 (109.6 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 59/176 (33%), Positives = 105/176 (59%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+LVE LF G +QV+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM
Sbjct: 1631 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQM 1690
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+G A RP D G +I+ S+ ++ + + LP+ES + + NAEIV T++N
Sbjct: 1691 VGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIEN 1750
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +++ +T+LY RM +NP Y L + L + +++L+ + L+++ +
Sbjct: 1751 KQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHLSELVEQTLSDLEQSKCI 1805
Score = 125 (49.1 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 198 LAKLLDRVPIPVKE-SLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRAL 251
L +L +VP + +P K N+LLQ ++S+++L L SD A RL +A
Sbjct: 1871 LRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQAC 1929
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+++ GW A A++L++MVT+ MWS + L+Q +E + + K
Sbjct: 1930 VDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDK 1980
Score = 75 (31.5 bits), Expect = 3.6e-47, Sum P(2) = 3.6e-47
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 400 QLLPVTALQNPSY-EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
QLLPV L P Y +A ++ +K N IQ++++ T++N+L+ A
Sbjct: 460 QLLPVEKL--PKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCA 503
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 2437 (862.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 498/964 (51%), Positives = 655/964 (67%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITR+ L+VELTITPDFQWDDK+HG E FW++VED D + +LHHEYFLLK +Y +++H
Sbjct: 1188 QPITRSTLKVELTITPDFQWDDKIHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEH 1247
Query: 368 SLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQT 427
+ F VP++EPLPPQ+ I + L LPV S+ L K P +
Sbjct: 1248 LVTFFVPVFEPLPPQYFI---RIASDRWLSCETQLPV------SFRHLILPEKYPPPTEL 1298
Query: 428 QVFAVL-YNTEDNVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSGKTICAE 485
L + N +L + F P + ++ A+ N V APTGSGKTICAE
Sbjct: 1299 LDLQPLPVSALRNGAFESLYQNFPFFN-PIQTQVFNAVYNSDDNVFVGAPTGSGKTICAE 1357
Query: 486 FAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL 545
FAILR +E G R VYI P+EALA+Q + DW +KF + L VV LT ET+ DLKL
Sbjct: 1358 FAILRMLLHNAE-G--RCVYITPMEALAEQVFLDWHQKFQENLNKKVVLLTGETSTDLKL 1414
Query: 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIA 605
L KG II+STP+KWD LSRRWKQRK VQ VSLFIIDE+HLIGG GPVLEVI +RMRYI+
Sbjct: 1415 LGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFIIDEVHLIGGDNGPVLEVICSRMRYIS 1474
Query: 606 SQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEAR 665
SQ+E IRIVALS+SL+NAKD+ W+G S+ FNF P VRPVPLE+ IQG ++++ + R
Sbjct: 1475 SQIERPIRIVALSSSLSNAKDVAHWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTR 1534
Query: 666 MKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725
+ +M KP Y AIM+H+ + KP LVFVPSR+ RLTA+D++ + C FL + K+
Sbjct: 1535 LLSMAKPVYHAIMKHSPS-KPVLVFVPSRRQTRLTAIDILTF-CAADVVPQRFLHSTEKD 1592
Query: 726 VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPL 785
+ P + + + L+ TL GVGYLHEGL+ +++ +V LF +G I+V V S S+CW +
Sbjct: 1593 LVPFMENLSDVTLKETLSNGVGYLHEGLSPTERRIVEHLFTSGAIQVVVASRSLCWGTNI 1652
Query: 786 TAHLA--------TGRKMLILT----TLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833
+AHL G+ + +LQM+G A RPL D+ +CVI+C K+++KK
Sbjct: 1653 SAHLVIVMDTQYYNGKIHAYVDYPIYDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKK 1712
Query: 834 FLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGV 890
FLYE PVESHL H LHD+FNAEIV +ENKQDAVDYLTWTF R+TQNPNYYNLQG+
Sbjct: 1713 FLYEPLPVESHLDHCLHDHFNAEIVTKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGM 1772
Query: 891 SHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSL 950
SHRHLSDHLSELVENT+ DLE ++ I +ED+MD+ P N GMIA+YYYI+Y TIE FS SL
Sbjct: 1773 SHRHLSDHLSELVENTLQDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSL 1832
Query: 951 TSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQ 1010
+KTK++GL+E++++A+EY +PIR E+ L+R+L NPK DPHVK N LLQ
Sbjct: 1833 NAKTKVRGLIEIISNAAEYKNIPIRHHEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQ 1892
Query: 1011 AHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEH 1070
AH S + L+ D E++L A RL+QA VDV+SSNGWLS AL AME++QMVTQ MW
Sbjct: 1893 AHLSRMQLSAELQSDTEEILSKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK 1952
Query: 1071 DSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNR 1130
DS L QLPHFT +L KRC + + +E++F Q+SDVQ+ D+ARFCNR
Sbjct: 1953 DSYLRQLPHFTSELIKRCTD---KGVESIFDIMEMEDEDRTGLLQLSDVQVADVARFCNR 2009
Query: 1131 FPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVD 1190
+PNI++SY+V D +++++G +QV LER+ GPV + +P+ +EEGWW+V+
Sbjct: 2010 YPNIELSYEVVDKDDIKSGSP-VVVQVQLERE---EEVTGPVIAPLFPQKREEGWWVVIG 2065
Query: 1191 DAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKE 1250
D K+N L++IKR++LQ+K++ KLDF APV G YTL FM D+YMGCDQEY F+ +VKE
Sbjct: 2066 DPKSNSLISIKRLTLQQKAKVKLDFVAPVVG-VHNYTLYFMSDAYMGCDQEYKFSTEVKE 2124
Query: 1251 AGEE 1254
A E
Sbjct: 2125 ADSE 2128
Score = 738 (264.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 155/244 (63%), Positives = 183/244 (75%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL LD
Sbjct: 786 MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 845
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QMLGRAGRPQYDS GEGI+IT H ELQYYLSL+NQQLPIESQ V KLA++LNAEIVLG
Sbjct: 846 ILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLNAEIVLG 905
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPE--VLDITLGERITDLIHTAANVLDRNN 178
VQNAK+A NW+ YTYLY RMLRNP LYG+S + +D L R DL+HTAA VL++NN
Sbjct: 906 NVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSIDPLLERRRMDLVHTAATVLEKNN 965
Query: 179 LVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKL-EGLS 237
LVKY ++SG FQ +L ++ I ES+ N LL+ +S+++L S
Sbjct: 966 LVKYDKRSGSFQVT----DLGRIASHFYI-THESI----MTYNQLLKPTLSEIELFRVFS 1016
Query: 238 LTSD 241
L+S+
Sbjct: 1017 LSSE 1020
Score = 531 (192.0 bits), Expect = 7.6e-48, Sum P(2) = 7.6e-48
Identities = 157/476 (32%), Positives = 236/476 (49%)
Query: 470 VLQLAPTGSGKTICAEFAILRN---HQRASET-GV--MRAVYIAPIEALAKQRYCDWERK 523
+L APTG+GKT A A+LR H T V + +YIAP+ +L ++
Sbjct: 496 LLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSLVQEMV----GS 551
Query: 524 FGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFII 580
FGK L G+ V ELT + + + + QII+ TPEKWD ++R+ +R Y Q V L II
Sbjct: 552 FGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGERTYTQLVRLIII 611
Query: 581 DELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGAS-SHGVF 639
DE+HL+ GPVLE ++AR + +R++ LS +L N +D+ + S G+F
Sbjct: 612 DEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVATCLRVDPSKGLF 671
Query: 640 NFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVFVPSRKYAR 698
F RPVPLE G+ R + M + Y IM+HA KN+ LVFV SRK
Sbjct: 672 YFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ--VLVFVHSRKETG 729
Query: 699 LTAVDLMIYSCKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNK 755
TA + C + D FL S + + + L+ L G H G+ +
Sbjct: 730 KTARAIRDM-CLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 788
Query: 756 SDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQ 803
D+ +V LF I+V V ++++ W V L AH + G ++ L +LQ
Sbjct: 789 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQ 848
Query: 804 MMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIE 863
M+G AGRP D+ + +++ +YY L + P+ES + L D NAEIV G ++
Sbjct: 849 MLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLNAEIVLGNVQ 908
Query: 864 NKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIME 919
N +DAV++L +T+ + L GVSH S + L+E DL T + ++E
Sbjct: 909 NAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRS--IDPLLERRRMDLVHTAATVLE 962
Score = 391 (142.7 bits), Expect = 5.4e-292, Sum P(2) = 5.4e-292
Identities = 78/118 (66%), Positives = 94/118 (79%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGR 246
E+ K+EL KLL+RVPIPVKES+EEPSAKINVLLQ YISQLKLEG +L +DM SAGR
Sbjct: 1028 EEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVYVTQSAGR 1087
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
L RA+FEIVL RGW+QL +K L L KM+ KRMW +PLRQF +P E++ K+EKK+F
Sbjct: 1088 LMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKIEKKNF 1145
Score = 344 (126.2 bits), Expect = 9.7e-28, Sum P(2) = 9.7e-28
Identities = 97/354 (27%), Positives = 173/354 (48%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+LQM+G AGRP D+ + +++ +YY L + P+ES + L D NAEIV G
Sbjct: 846 ILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLNAEIVLG 905
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
++N +DAV++L +T+ R+ +NP Y GVSH S + L+E DL T + +
Sbjct: 906 NVQNAKDAVNWLGYTYLYVRMLRNPTLY---GVSHDDRS--IDPLLERRRMDLVHTAATV 960
Query: 918 MEDD----MDLCPSNY-----GMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
+E + D ++ G IAS++YI++++I ++ L L V + +SE
Sbjct: 961 LEKNNLVKYDKRSGSFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE 1020
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQE 1027
+ + +R E+ +++L+ +P K N LLQA+ S +EG L D
Sbjct: 1021 FRNITVREEEKLELQKLLERVPIP-VKESIEEPSAKINVLLQAYISQLKLEGFALMADMV 1079
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087
V SA RL++A+ +++ S GW L + + +M+ + MW+ S L Q +++ K+
Sbjct: 1080 YVTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKK 1139
Query: 1088 CQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQ 1141
E E ++ +M I ++ ++FP +D++ +Q
Sbjct: 1140 I-EKKNFPFERLYDLNHNEIGELIRMPKMGKT----IHKYVHQFPKLDLAVHLQ 1188
Score = 296 (109.3 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 59/176 (33%), Positives = 104/176 (59%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R++VE LF G +QV+V++ +L WG N+ AH VI+ TQ YN + A+ + D++QM
Sbjct: 1624 ERRIVEHLFTSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDVLQM 1683
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+G+A RP D G +I+ S+ ++ + + LP+ES L + NAEIV TV+N
Sbjct: 1684 VGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKTVEN 1743
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +++ +T+LY RM +NP Y L + L + +++L+ L+++ +
Sbjct: 1744 KQDAVDYLTWTFLYRRMTQNPNYYNLQG-MSHRHLSDHLSELVENTLQDLEQSKCI 1798
Score = 134 (52.2 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 35/111 (31%), Positives = 59/111 (53%)
Query: 198 LAKLLDRVPIPVKE-SLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRAL 251
L +L +VP + +P K N+LLQ ++S+++L L SD A RL +A
Sbjct: 1864 LRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAVRLIQAC 1922
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+++ GW A A++L++MVT+ MWS + LRQ +E++ + K
Sbjct: 1923 VDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQLPHFTSELIKRCTDK 1973
Score = 68 (29.0 bits), Expect = 7.6e-48, Sum P(2) = 7.6e-48
Identities = 35/149 (23%), Positives = 63/149 (42%)
Query: 296 LMKLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEY 355
L + EK+D + R R+ + D + D HG +++ D + +
Sbjct: 362 LQETEKEDIIREERSRRE--RMRKSRVDDLESMDIDHGESVSSRQLLDLEDLTFT-QGSH 418
Query: 356 FLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEAL 415
F+ K+ D S YE + L P+ F L+ ++ LP A +A
Sbjct: 419 FMANKRCQLPDGSFRKQRKGYEEVHVPAL-KPKPFGDEETLVGIEKLPKYA------QAG 471
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
++ +K N IQ+++F T++N+LV A
Sbjct: 472 FEGFKSLNRIQSKLFKTTMETDENLLVCA 500
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 2018 (715.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 442/983 (44%), Positives = 625/983 (63%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITR LRVELTITPDFQWD+KVHG E FWV++ED D + ILHHE+FLLK++Y++++H
Sbjct: 1191 QPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEFFLLKQKYSQDEH 1250
Query: 368 SLNFTVPIYEPLPPQHL--ILPEKF-PPPTEL-LDLQLLPVTALQNPSYEALYQNYKLFN 423
L F VP++EPLPPQ+ I+ +++ T+L + + L + P E L +
Sbjct: 1251 QLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPPTELLDLQPLPIS 1310
Query: 424 PIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIIL-VLQLAPTGSGKTI 482
++ F Y+ R F P + ++ A+ N V APTGSGK
Sbjct: 1311 ALRQPKFESFYS----------QRFPQFN--PIQTQVFNAVYNSDENVFVGAPTGSGKMT 1358
Query: 483 CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
AEFAI+R S+ R VY+ EALA + DW KFG L + VV+LT ET D
Sbjct: 1359 IAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFGS-LDIKVVKLTGETGTD 1414
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
LKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+ GPVLE++ +RMR
Sbjct: 1415 LKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMR 1474
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
YI+SQ+E +IRIVALS SL +A+D+ +W+G + + FNF P VRP+PLE+ IQG ++T+
Sbjct: 1475 YISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHN 1534
Query: 663 EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
R+ M+KP Y AI++++ + KP +VFV SRK ARLTA+D++ Y+ D Q + F
Sbjct: 1535 ATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAASDL-QPNRFFHAE 1592
Query: 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
++++P + + ++ L+ TL GV YLHEGL+ SD +V LF++G ++V V+S +CW
Sbjct: 1593 EEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWG 1652
Query: 783 VPLTAHLA--------TGRKMLI----LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830
+ ++AHL G+ +T +LQM+G A RP D KCV++C + K++
Sbjct: 1653 MSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDF 1712
Query: 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
+KKF+ E P+ESHL H +HD+FNAE+V IENKQDAVDYLTWTF RLTQNPNYYNL
Sbjct: 1713 FKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNL 1772
Query: 888 QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFS 947
QGV+HRHLSDHLSELVENT+SDLE ++ I +EDDMD P N GMIA+YYYI+Y TIE FS
Sbjct: 1773 QGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFS 1832
Query: 948 SSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANA 1007
SL SKTK++GLLE+++SA+EY + +R EE+++R L QR N K T P+ A
Sbjct: 1833 LSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTL--SQRLP--N-KLTGPNETA-- 1885
Query: 1008 LLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1067
F+ H++ NL L L LQ + I S ++ L+ V + + G
Sbjct: 1886 ---PKFNDPHIKTNLLLQAHLSRLQLGPELQGDTEQILSK---AIRLIQACVDVLSSNG- 1938
Query: 1068 WEHDSM----LLQL---PHFTKD--LAKRCQENPG-------RSIETVFXXXXXXXXXXX 1111
W ++ L Q+ ++KD L + +P + IETVF
Sbjct: 1939 WLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKIETVFDIMELEDEDRT 1998
Query: 1112 XXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGP 1171
Q+SD+Q+ D+ARFCNR+PNI+++Y+V D + + +G +T+ VV++ + GP
Sbjct: 1999 RLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSG---STVNVVVQLEREDEVT-GP 2054
Query: 1172 VYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFM 1231
V + +P+ +EEGWW+V+ D KTN LL+IKR++LQ+K++ KLDF AP GK YTL +M
Sbjct: 2055 VIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAP-SPGKHDYTLYYM 2113
Query: 1232 CDSYMGCDQEYSFTVDVKEAGEE 1254
DSY+GCDQEY F+++V + E
Sbjct: 2114 SDSYLGCDQEYKFSIEVGDFQSE 2136
Score = 719 (258.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 137/192 (71%), Positives = 161/192 (83%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVYNPEKG W ELS LD
Sbjct: 789 MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALD 848
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QMLGRAGRPQYD+ GEGI+IT HSELQ+YLSL+NQQLPIESQF+SKL ++LNAEIVLG
Sbjct: 849 VLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLG 908
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TVQ+ ++A NW+ YTYLY RMLRNP LYG+S + + D L + DL+HTAA L+R+
Sbjct: 909 TVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSG 968
Query: 179 LVKYGRKSGYFQ 190
L+KY RK+G+FQ
Sbjct: 969 LIKYDRKTGHFQ 980
Score = 679 (244.1 bits), Expect = 6.5e-61, Sum P(2) = 6.5e-61
Identities = 242/894 (27%), Positives = 425/894 (47%)
Query: 386 LPEKFPPPTELLDLQLLPVTALQNPSY-EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
+P P P + + +L PV L P Y + +++ +K N IQ++++ ++++N+L+ A
Sbjct: 447 VPALKPVPFDANE-ELQPVDKL--PKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCA 503
Query: 445 LSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAV 504
P A N+ L+ + G K I + I N Q + +
Sbjct: 504 ----------PTG----AGKTNVALLTMMREIG--KHINEDGTI--NAQD------FKII 539
Query: 505 YIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSR 564
Y+AP+++L ++ ++ R+ + V ELT + + + + Q+I+ TPEKWD ++R
Sbjct: 540 YVAPMKSLVQEMVGNFGRRLAC-YNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITR 598
Query: 565 RWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVAR-MRYIASQVENKIRIVALSTSLAN 623
+ +R +V V L IIDE+HL+ + GPVLE +VAR +R I + E ++R+V LS +L N
Sbjct: 599 KGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQE-EVRLVGLSATLPN 657
Query: 624 AKDLGEWIGAS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAK 682
+D+ ++ G+F F RPV LE Q GV R + M + Y M+HA
Sbjct: 658 YQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAG 717
Query: 683 NEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAK-EV-EPHVSIIQEEMLRA 740
+ LVFV SRK TA + + S SA EV ++ L+
Sbjct: 718 RNQ-VLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKE 776
Query: 741 TLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT--------- 791
L G H G+ + D+ +V LF I+V V ++++ W V L AH
Sbjct: 777 LLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNP 836
Query: 792 --GRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHF 848
GR + L +LQM+G AGRP D + +++ + ++Y L + P+ES
Sbjct: 837 EKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISK 896
Query: 849 LHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRH------LSDHL 899
L D NAEIV G +++ QDAV++L +T+ R+ +NP Y GVSH L H
Sbjct: 897 LPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLY---GVSHDAIKADPLLEQHR 953
Query: 900 SELVENTISDLEATRSIIMEDDMD---LCPSNYGMIASYYYISYKTIECFSSSLTSKTKM 956
++L+ LE RS +++ D ++ G IAS+YY++++T+ ++ L
Sbjct: 954 ADLLHTAACCLE--RSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSE 1011
Query: 957 KGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPH-VKANALLQAHFSA 1015
L V + +SE+ + +R E+ +++L+ +R + + H K N LLQA+ S
Sbjct: 1012 IELFRVFSLSSEFRHISVREEEKLELQKLM--ERVPIPIKESIEEHSAKVNVLLQAYISQ 1069
Query: 1016 RHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSML 1074
+EG L D + SA+RL++A+ +++ + GW LA + + +M+ + MW+ + L
Sbjct: 1070 LKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPL 1129
Query: 1075 LQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLD--IARFCNRFP 1132
Q ++AK+ ++ F ++ V L I +F ++FP
Sbjct: 1130 RQFKKMPDEIAKKLEKKH-------FPWGRLYDLEPHELGELIRVPKLGKTIHKFVHQFP 1182
Query: 1133 NIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYS-NRYPKAKEEGWWLVVDD 1191
+++S +Q + G TL+V L + P + + + EG+W++++D
Sbjct: 1183 KLELSTHIQP---ITRG----TLRVELT--------ITPDFQWDEKVHGQSEGFWVLIED 1227
Query: 1192 AKTNQLLAIKRVSLQRK---SRAKLDFAAPV-EGGKKTYTLDFMCDSYMGCDQE 1241
+ +L + L++K +L F PV E Y L + D ++G + +
Sbjct: 1228 VDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQ 1281
Score = 378 (138.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 78/122 (63%), Positives = 94/122 (77%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGR 246
E+ K+EL KL++RVPIP+KES+EE SAK+NVLLQ YISQLKLEG +L SDM SA R
Sbjct: 1031 EEEKLELQKLMERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAAR 1090
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFL 306
L RA+FEIVL RGW+QLA+K L L KM+ +RMW TPLRQF +P+EI KLEKK F
Sbjct: 1091 LMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPW 1150
Query: 307 GK 308
G+
Sbjct: 1151 GR 1152
Score = 299 (110.3 bits), Expect = 6.8e-29, Sum P(2) = 6.8e-29
Identities = 58/180 (32%), Positives = 107/180 (59%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ D +LVE LF G VQV V + +L WG+++ AH VII TQ YN + ++ + D
Sbjct: 1623 LSASDHRLVEQLFDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITD 1682
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QM+GRA RP D+ + +++ S+ ++ +N+ LPIES ++ + NAE+V
Sbjct: 1683 VLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTK 1742
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T++N ++A +++ +T+LY R+ +NP Y L V L + +++L+ + L+++ +
Sbjct: 1743 TIENKQDAVDYLTWTFLYRRLTQNPNYYNLQG-VTHRHLSDHLSELVENTLSDLEQSKCI 1801
Score = 125 (49.1 bits), Expect = 2.2e-74, Sum P(2) = 2.2e-74
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 206 PIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRALFEIVLKRGW 260
P +P K N+LLQ ++S+L+L G L D A RL +A +++ GW
Sbjct: 1881 PNETAPKFNDPHIKTNLLLQAHLSRLQL-GPELQGDTEQILSKAIRLIQACVDVLSSNGW 1939
Query: 261 SQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKL-EKK 302
A A++L++MVT+ MWS + L+Q EI+ + EKK
Sbjct: 1940 LSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKK 1982
Score = 39 (18.8 bits), Expect = 1.4e-248, Sum P(3) = 1.4e-248
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 157 ITLGERITDLIHTAANVL 174
+ LG++ITD A N L
Sbjct: 173 VNLGKKITDFGSDAVNAL 190
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 1028 (366.9 bits), Expect = 1.7e-309, Sum P(6) = 1.7e-309
Identities = 213/472 (45%), Positives = 296/472 (62%)
Query: 798 LTTLLQMMGHAGRP----LLDNS-EKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDN 852
+ +LQM+G AG+ ++ N K ++LCHAP KEYYK FL E PVESHL H LHD
Sbjct: 1755 INDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQ 1814
Query: 853 FNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISD 909
FN+EIV I KQDA+DYLTWTF RL QNPNYYNL GVSH HLS+HLSELVENT+ +
Sbjct: 1815 FNSEIVTKTITKKQDALDYLTWTFLYRRLNQNPNYYNLSGVSHLHLSEHLSELVENTLVE 1874
Query: 910 LEATRSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
LE + I ++DD D + P N G+IASYYY+ Y+TIE F SSL S T+ +G+++++++A E
Sbjct: 1875 LEQSNCITIQDDQDKVSPLNLGIIASYYYLKYQTIELFGSSLKSTTRRRGIMDIISNAPE 1934
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEK 1028
+ LPIR E++++ +L +H P + K N LLQ HFS + +L DQ+
Sbjct: 1935 FNSLPIRHREDQILMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESISADLYQDQKF 1994
Query: 1029 VLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRC 1088
+L +A+RLLQA+VDVISSN WL A+ AME+SQM+TQ MW+ DS+ QLPH K +R
Sbjct: 1995 ILENATRLLQAIVDVISSNSWLQPAIAAMELSQMITQAMWDSDSVFKQLPHMNK---RRI 2051
Query: 1089 QENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRA 1148
+ IE+VF +S + D+ + ++P+ID+SY+VQD +++ A
Sbjct: 2052 DAITSQGIESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHA 2111
Query: 1149 GGEDTTLQVVLERDLGGRTELGPVYSNR---------YPKAKEEGWWLVVDDAKTNQLLA 1199
T+++V+ERDLG E P+ N YPK K GWW ++ D+K N LLA
Sbjct: 2112 DSI-MTVEMVIERDLGDDEE-NPIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLA 2169
Query: 1200 IKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEA 1251
IKR++ +K++ K +F P G K +L DSY GCDQE+ +++ A
Sbjct: 2170 IKRITFLKKTKVKFEFPTPAVG-KHQLSLYLFSDSYNGCDQEHELNINILPA 2220
Score = 706 (253.6 bits), Expect = 1.7e-309, Sum P(6) = 1.7e-309
Identities = 152/381 (39%), Positives = 239/381 (62%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE--LGMC 531
APT SGKT+CAE A++R ++ + V VY+AP++ LA R DW KFG + G+
Sbjct: 1420 APTNSGKTVCAEIALIRCFKQNPKAKV---VYLAPMQDLASVRLKDWSNKFGVKSPFGLV 1476
Query: 532 VVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 591
V +LT + D K+L++ II++ EKWD LSR+WKQRK +Q ++L I+DELHLIGG+ G
Sbjct: 1477 VSDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYG 1536
Query: 592 PVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLE 651
P +E++V+RMRYI++Q N +R++ALS+S+ANA+DL WIGA+ +NF P VRP+P+E
Sbjct: 1537 PTMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVE 1596
Query: 652 IQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM--IYSC 709
QIQG + +F ARM AMTKPT + ++ KN++ ++VFVP+RK +R A D++ + S
Sbjct: 1597 YQIQGFEFPHFNARMLAMTKPTVYEVAKN-KNQQ-SIVFVPTRKLSRSLAADIIANVSSF 1654
Query: 710 KDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK 769
+D+ K +L+C + P++ + L+ +L++GV + H+GL + ++ VV LF +G
Sbjct: 1655 EDTLTKP-YLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGS 1713
Query: 770 IKVCVMSSSMCW---------EVPLTAHLATGRKMLIL----TTLLQMMGHAGRP----L 812
I+V + + S+ W V + L G+ + + +LQM+G AG+ +
Sbjct: 1714 IRVLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGV 1773
Query: 813 LDNSEKCVILCHAPHKEYYKK 833
+ N V+L K+ Y K
Sbjct: 1774 ISNKVAKVLLLCHAPKKEYYK 1794
Score = 646 (232.5 bits), Expect = 1.7e-309, Sum P(6) = 1.7e-309
Identities = 124/196 (63%), Positives = 154/196 (78%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R DR LVEDLF D +QVL+STA LAWGVNLPAHTVIIKGTQ+YNPEKG W ELSPLD
Sbjct: 859 LSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLD 917
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+ QMLGRAGRP +D GEGIIIT ELQ+YLSL+N QL IESQF+S++A+ LNAEIVLG
Sbjct: 918 VTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLG 977
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
++Q ++A NW+ YTYLY M+RNP LY +S + D L +R DL+H+AA +L++N+
Sbjct: 978 SIQTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNS 1037
Query: 179 LVKYGRKSGYFQSEKI 194
L+KY RKSG QS ++
Sbjct: 1038 LIKYDRKSGKLQSTEL 1053
Score = 536 (193.7 bits), Expect = 1.6e-47, Sum P(4) = 1.6e-47
Identities = 140/441 (31%), Positives = 229/441 (51%)
Query: 470 VLQLAPTGSGKTICAEFAIL----RNHQRAS---ETGVMRAVYIAPIEALAKQRYCDWER 522
+L APT SGKT A IL +N R S + VYIAP+++L ++ ++ +
Sbjct: 570 LLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSK 629
Query: 523 KFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 582
+ K G+ V ELT + ++ K + + QII++TPEKWD ++R+ R Y Q V L IIDE
Sbjct: 630 RL-KSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDE 688
Query: 583 LHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFP 642
+HL+ + GPVLE IVAR + + +R+V LS +L N +D+ ++ GVF F
Sbjct: 689 IHLLHDERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPDGVFYFD 748
Query: 643 PGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAV 702
RP+PLE Q G+ + +++ T+T + + + + L+FV SR+ T
Sbjct: 749 SSYRPIPLEQQYIGISDRGIK-QLQRCNDITFTKVSERVGDHQ-ILIFVHSRRETAKTGK 806
Query: 703 DLMIYSCKDSDQKSAFLLCSAKEVEPHVSI--IQEEMLRATLRLGVGYLHEGLNKSDQEV 760
DL + +D +++E+ + IQ L+ L G+G H GL++SD+ +
Sbjct: 807 DLRDRAVEDQSIDRYIRDPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSL 866
Query: 761 VSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM---------LILTTLLQMMGHAG 809
V LF +I+V + ++++ W V L AH + G ++ L + QM+G AG
Sbjct: 867 VEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKGWCELSPLDVTQMLGRAG 926
Query: 810 RPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAV 869
RP D + +I+ ++Y L +ES + DN NAEIV G I+ +DAV
Sbjct: 927 RPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAV 986
Query: 870 DYLTWTFR---LTQNPNYYNL 887
++L +T+ + +NP Y +
Sbjct: 987 NWLGYTYLYICMIRNPPLYEI 1007
Score = 352 (129.0 bits), Expect = 1.7e-309, Sum P(6) = 1.7e-309
Identities = 70/113 (61%), Positives = 92/113 (81%)
Query: 195 KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSR 249
K EL KLL+RVPIP+KE++EEPS+KINVLLQTYIS LKL+G +L DM SA R++R
Sbjct: 1103 KFELEKLLERVPIPIKENIEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITR 1162
Query: 250 ALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
ALFEIVLK+GW+QLA+K L L+KM+ +MWS Q+PLRQF+ I ++L +LE++
Sbjct: 1163 ALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERR 1215
Score = 305 (112.4 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 92/348 (26%), Positives = 156/348 (44%)
Query: 803 QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVI 862
QM+G AGRP D + +I+ ++Y L +ES + DN NAEIV G I
Sbjct: 920 QMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSI 979
Query: 863 ENKQDAVDYLTWTFR---LTQNPNYYNLQGVSHRH---LSDHLSELVENTISDLEATRSI 916
+ +DAV++L +T+ + +NP Y + L +LV + + LE S+
Sbjct: 980 QTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKN-SL 1038
Query: 917 IMEDDMD--LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPI 974
I D L + G +AS+YYI+ ++ + L LL V + +SE+ + +
Sbjct: 1039 IKYDRKSGKLQSTELGKVASHYYITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVV 1098
Query: 975 RPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSA 1033
R GE+ + +L+ +P K N LLQ + S ++G L +D + SA
Sbjct: 1099 REGEKFELEKLLERVPIPIKE-NIEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSA 1157
Query: 1034 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPG 1093
SR+ +A+ +++ GW LA + +++M+ MW S L Q + + + E G
Sbjct: 1158 SRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKISPKVLNQL-ERRG 1216
Query: 1094 RSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQ 1141
IE ++ QL D+ + FP +D++ VQ
Sbjct: 1217 IPIEDLYEYNSQQLGNAIQNPSEGK-QLFDLI---HNFPKLDLTAHVQ 1260
Score = 249 (92.7 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 57/182 (31%), Positives = 108/182 (59%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGV-NLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQ 63
+R++VE LF G ++VL++T ++AW + N+ A V+I GTQ+Y + + + DI+Q
Sbjct: 1701 ERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQ 1760
Query: 64 MLGRAGRPQ----YDSYGEGIIITGHS-ELQYYLSLMNQQLPIESQFVSKLAELLNAEIV 118
M+GRAG+ + + +++ H+ + +YY +N+ LP+ES L + N+EIV
Sbjct: 1761 MIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIV 1820
Query: 119 LGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNN 178
T+ ++A +++ +T+LY R+ +NP Y LS V + L E +++L+ L+++N
Sbjct: 1821 TKTITKKQDALDYLTWTFLYRRLNQNPNYYNLSG-VSHLHLSEHLSELVENTLVELEQSN 1879
Query: 179 LV 180
+
Sbjct: 1880 CI 1881
Score = 216 (81.1 bits), Expect = 1.7e-309, Sum P(6) = 1.7e-309
Identities = 41/79 (51%), Positives = 58/79 (73%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTE-ED 366
+PI +LRVEL+ITPDFQ+D++ H +W+IVED DG+ IL+ EYF LKK+ ED
Sbjct: 1260 QPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGERILYFEYFSLKKKMVNGED 1319
Query: 367 HSLNFTVPIYEPLPPQHLI 385
++FTVP+ +PLPPQ+ +
Sbjct: 1320 QLVSFTVPLSQPLPPQYYV 1338
Score = 177 (67.4 bits), Expect = 1.7e-309, Sum P(6) = 1.7e-309
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 378 PLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQ-NYKLFNPIQTQVFAVLYNT 436
P+ QHLILPEK+PP LLDLQ LP+ L++P E++++ + +FN IQTQVF +Y +
Sbjct: 1353 PISFQHLILPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQS 1412
Query: 437 EDNVLVAA 444
DN ++A
Sbjct: 1413 NDNAFISA 1420
Score = 121 (47.7 bits), Expect = 7.3e-66, Sum P(2) = 7.3e-66
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 198 LAKLLDRVPIPV-KESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRAL 251
L KL +P + K + +E S K+NVLLQ + S+ + L D +A RL +A+
Sbjct: 1948 LMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESISA-DLYQDQKFILENATRLLQAI 2006
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQ 287
+++ W Q A A++LS+M+T+ MW + +Q
Sbjct: 2007 VDVISSNSWLQPAIAAMELSQMITQAMWDSDSVFKQ 2042
Score = 69 (29.3 bits), Expect = 6.3e-92, Sum P(3) = 6.3e-92
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 1173 YSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRK---SRAKL-DFAAPVEGG-KKTYT 1227
Y RY GWW++V+D ++L + SL++K +L F P+ Y
Sbjct: 1279 YDERYHN-NSIGWWIIVEDVDGERILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYY 1337
Query: 1228 LDFMCDSYMGCDQEYSFTV 1246
+ + D ++G EYS +
Sbjct: 1338 VRVISDHWIGA--EYSLPI 1354
Score = 55 (24.4 bits), Expect = 1.8e-177, Sum P(4) = 1.8e-177
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 390 FPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
F P L+ ++ LP + + P E+ K N +Q+++F + T++N+L++A
Sbjct: 524 FNPNERLISIEELPEWS-RLPFEES---GVKSLNRVQSKLFDCAFKTDNNLLLSA 574
Score = 41 (19.5 bits), Expect = 4.0e-120, Sum P(5) = 4.0e-120
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 840 PVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHL 899
PVE + F +FNA ++A + V + + +N N ++ V R LS L
Sbjct: 1594 PVEYQIQGFEFPHFNARMLAMT----KPTV------YEVAKNKNQQSIVFVPTRKLSRSL 1643
Query: 900 S-ELVENTISDLEAT 913
+ +++ N +S E T
Sbjct: 1644 AADIIAN-VSSFEDT 1657
Score = 40 (19.1 bits), Expect = 6.1e-211, Sum P(5) = 6.1e-211
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 154 VLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESL 213
+ +I L + L N+ + + +S Q KI ++ L+R IP+++
Sbjct: 1164 LFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLY 1223
Query: 214 EEPSAKINVLLQ 225
E S ++ +Q
Sbjct: 1224 EYNSQQLGNAIQ 1235
Score = 37 (18.1 bits), Expect = 1.3e-210, Sum P(5) = 1.3e-210
Identities = 13/67 (19%), Positives = 29/67 (43%)
Query: 182 YGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD 241
+GR G + +LL+++ ++++E+ +N TY + K++ +
Sbjct: 41 WGRLRGEMGDRVNYSKPLELLEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEK 100
Query: 242 MSAGRLS 248
S R S
Sbjct: 101 KSTNRKS 107
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 1334 (474.7 bits), Expect = 2.7e-271, Sum P(5) = 2.7e-271
Identities = 278/634 (43%), Positives = 400/634 (63%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKF-GKELGMCV 532
APTGSGKT+CAE AILR H ++G RAVY+AP + L R DW+++ G G +
Sbjct: 1406 APTGSGKTVCAELAILR-HWAKEDSG--RAVYVAPFQELIDSRLEDWKKRLSGLAGGKSI 1462
Query: 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 592
+LT E DLK+L ++++TP +WD LSR+W++RK V+ V LF+ DELH++GG GG
Sbjct: 1463 AKLTGEMTADLKILAGSDLVLATPTQWDVLSRQWQKRKNVRAVELFVADELHMLGGYGGY 1522
Query: 593 VLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEI 652
V EV+V+RM IA Q E+ +RIV LS L+NA+D+GEWIGAS H ++NF P RPVPLE+
Sbjct: 1523 VYEVVVSRMHSIALQTESGMRIVGLSVPLSNARDIGEWIGASKHTIYNFSPHARPVPLEL 1582
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
IQ I +F + M AM +P Y +I+Q + +KPAL+FVP+RK R TA+DL+ +C
Sbjct: 1583 HIQSFSIPHFPSLMLAMARPAYLSILQLSA-DKPALIFVPNRKQTRATAIDLLT-ACSID 1640
Query: 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV 772
D + FL +E++P + + E L +L G+GY HE L+++D+ +VS L+ G I+V
Sbjct: 1641 DDEDRFLHADIEELQPLLGRVHERTLAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQV 1700
Query: 773 CVMSSSMCWEVPLTAHLAT--------GRKMLIL----TTLLQMMGHAGRPLLDNSEKCV 820
+ S +CWE+ LT HL GR+ + + +LQM G A RP D + V
Sbjct: 1701 VIASRDVCWELNLTGHLVVVMGTQFFEGREHRYIDYPISEILQMFGKASRPGQDKVGRGV 1760
Query: 821 ILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---R 877
++ +EYYKKFL EA PVESHL ++HD F EI G I + QD+VD+LT+T+ R
Sbjct: 1761 LMVPTVKREYYKKFLNEALPVESHLQLYMHDAFVTEISQGTIASTQDSVDWLTYTYFYRR 1820
Query: 878 LTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIM-EDDMDLCPSNYGMIASYY 936
L NP++Y L +SH LS LSELVENT+ +L + I + E+D + P N I +YY
Sbjct: 1821 LLANPSFYGLTDISHEGLSTFLSELVENTLKELSEAKIIDLDEEDDSVSPLNAASIGAYY 1880
Query: 937 YISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANP 996
ISY T++ F SL+++TK+KG+LE++ +A+E+ + +R EE ++RR+ + +
Sbjct: 1881 NISYITMQTFLLSLSARTKLKGILEIVTAATEFESVQMRRHEEHILRRVYDRVPVKTSQV 1940
Query: 997 KCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLA 1056
PH K+ LLQAHFS + +L DQE ++ A LL A VD+++S G ++ A+ A
Sbjct: 1941 AFDSPHFKSFVLLQAHFSRMQLPIDLAKDQEVIVSKALNLLSACVDILASEGHMN-AMNA 1999
Query: 1057 MEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQE 1090
ME+SQMV Q MW+ DS L Q+PHF + K E
Sbjct: 2000 MEMSQMVVQAMWDRDSPLKQIPHFGPEAIKVANE 2033
Score = 831 (297.6 bits), Expect = 5.3e-206, Sum P(5) = 5.3e-206
Identities = 187/467 (40%), Positives = 272/467 (58%)
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEI 857
++ +LQM G A RP D + V++ +EYYKKFL EA PVESHL ++HD F EI
Sbjct: 1738 ISEILQMFGKASRPGQDKVGRGVLMVPTVKREYYKKFLNEALPVESHLQLYMHDAFVTEI 1797
Query: 858 VAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATR 914
G I + QD+VD+LT+T+ RL NP++Y L +SH LS LSELVENT+ +L +
Sbjct: 1798 SQGTIASTQDSVDWLTYTYFYRRLLANPSFYGLTDISHEGLSTFLSELVENTLKELSEAK 1857
Query: 915 SIIM-EDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLP 973
I + E+D + P N I +YY ISY T++ F SL+++TK+KG+LE++ +A+E+ +
Sbjct: 1858 IIDLDEEDDSVSPLNAASIGAYYNISYITMQTFLLSLSARTKLKGILEIVTAATEFESVQ 1917
Query: 974 IRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSA 1033
+R EE ++RR+ + + PH K+ LLQAHFS + +L DQE ++ A
Sbjct: 1918 MRRHEEHILRRVYDRVPVKTSQVAFDSPHFKSFVLLQAHFSRMQLPIDLAKDQEVIVSKA 1977
Query: 1034 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPG 1093
LL A VD+++S G ++ A+ AME+SQMV Q MW+ DS L Q+PHF + K E
Sbjct: 1978 LNLLSACVDILASEGHMN-AMNAMEMSQMVVQAMWDRDSPLKQIPHFGPEAIKVANEYNI 2036
Query: 1094 RSI----ETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCN-RFPNIDMSYKVQDSENVRA 1148
I + + + + QL A F N ++P +++ ++V+D EN+ A
Sbjct: 2037 NDIFEFMDAMDPSENKDYNTLVKRLNLDNKQLAQAAAFTNNKYPILELDFEVEDPENITA 2096
Query: 1149 GGEDTTLQVVLERDLGGRTELGP-VYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQR 1207
G E L++ +ER++ E V++ YP K E WWLVV D KT LLAIKRV++ R
Sbjct: 2097 G-EPAYLKIKVEREVDEDEEFDTTVHAPFYPGQKMENWWLVVGDEKTRNLLAIKRVTIGR 2155
Query: 1208 KSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAGEE 1254
K +LD+ P G + TL MCDSY+G DQ +FTV E EE
Sbjct: 2156 KLELRLDYTVPTPG-EHELTLYLMCDSYVGVDQAPTFTVRAAEGMEE 2201
Score = 630 (226.8 bits), Expect = 2.7e-271, Sum P(5) = 2.7e-271
Identities = 121/191 (63%), Positives = 151/191 (79%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR V+ LF DG +QVLV TA LAWGVNLPAHTVIIKGTQVY+PEKG+W ELSP D++QM
Sbjct: 848 DRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTVIIKGTQVYSPEKGSWVELSPQDVLQM 907
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
LGRAGRPQYD+YGEGIIIT +E+QYYLSLMNQQLPIESQ VSKLA+ +NAEIVLG ++
Sbjct: 908 LGRAGRPQYDTYGEGIIITTQAEIQYYLSLMNQQLPIESQLVSKLADNMNAEIVLGNIRT 967
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVL-DITLGERITDLIHTAANVLDRNNLVKYG 183
E +W+ YTYL+ RMLR+P LY + + D L ++ DL+H+AA +L++ LVKY
Sbjct: 968 RDEGVDWLGYTYLFVRMLRSPGLYSVGADYENDDALEQKRVDLVHSAAVLLEKAGLVKYD 1027
Query: 184 RKSGYFQSEKI 194
+K+G QS ++
Sbjct: 1028 KKTGRLQSTEL 1038
Score = 540 (195.1 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 153/479 (31%), Positives = 251/479 (52%)
Query: 470 VLQLAPTGSGKTICAEFAILRN--HQRASETG-VM----RAVYIAPIEALAKQRYCDWER 522
+L APTGSGKT A +ILR R S+TG +M + VYI+P++AL +++ ++ R
Sbjct: 551 MLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKIVYISPLKALVQEQVENFGR 610
Query: 523 KFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 582
+ G+ V ELT + + + + + Q+I++TPEK+D ++R+ + Y + V L IIDE
Sbjct: 611 RLAP-YGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVITRKASETSYTKLVRLIIIDE 669
Query: 583 LHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGAS-SHGVFNF 641
+HL+ + GPV+E IV+R Q + +RIV LS +L N +D+ ++ + G+F+F
Sbjct: 670 IHLLHDERGPVIESIVSRTIRQVEQTGDAVRIVGLSATLPNYRDVASFLRVDPAKGLFHF 729
Query: 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVFVPSRK----- 695
RP PL+ + GV ++K M Y +++H +N L+FV SRK
Sbjct: 730 DGSYRPCPLKQEFIGVTDKKPIKQLKIMNDICYNKVIEHVGQNRNQMLIFVHSRKETAKT 789
Query: 696 --YARLTAVDL-MIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEG 752
Y R A+++ I SD S +L A+E E + + L+ L G G H G
Sbjct: 790 AKYLRDKALEMETIGQILKSDSASRAIL--AEEAES----VNDAALKDILPYGFGIHHAG 843
Query: 753 LNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTT 800
L+ +D++ V LF+ G I+V V ++++ W V L AH + G ++ L
Sbjct: 844 LSLADRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTVIIKGTQVYSPEKGSWVELSPQD 903
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+LQM+G AGRP D + +I+ +YY + + P+ES L L DN NAEIV G
Sbjct: 904 VLQMLGRAGRPQYDTYGEGIIITTQAEIQYYLSLMNQQLPIESQLVSKLADNMNAEIVLG 963
Query: 861 VIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIME 919
I + + VD+L +T+ + L V + +D + +E DL + ++++E
Sbjct: 964 NIRTRDEGVDWLGYTYLFVRMLRSPGLYSVGADYEND---DALEQKRVDLVHSAAVLLE 1019
Score = 336 (123.3 bits), Expect = 2.7e-271, Sum P(5) = 2.7e-271
Identities = 68/114 (59%), Positives = 86/114 (75%)
Query: 195 KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSR 249
K+ELAK+L RVP+PVKE ++EP AKINVLLQ YIS+LKLEGL+L +D+ SAGR+ R
Sbjct: 1088 KLELAKMLGRVPVPVKEGIDEPHAKINVLLQAYISRLKLEGLALMADLVYVTQSAGRILR 1147
Query: 250 ALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
ALFEI L+RGW+ +A+ AL L KM +RMW +PLRQF P +IL K E+ D
Sbjct: 1148 ALFEICLRRGWASVAKNALDLCKMAERRMWPTMSPLRQFPRCPRDILQKSERID 1201
Score = 332 (121.9 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 87/298 (29%), Positives = 148/298 (49%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+LQM+G AGRP D + +I+ +YY + + P+ES L L DN NAEIV G
Sbjct: 904 VLQMLGRAGRPQYDTYGEGIIITTQAEIQYYLSLMNQQLPIESQLVSKLADNMNAEIVLG 963
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRH---LSDHLSELVENTISDLEATR 914
I + + VD+L +T+ R+ ++P Y++ G + + L +LV + LE
Sbjct: 964 NIRTRDEGVDWLGYTYLFVRMLRSPGLYSV-GADYENDDALEQKRVDLVHSAAVLLEKA- 1021
Query: 915 SIIMEDDMD--LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQL 972
++ D L + G IAS+YYI + ++ ++ L L + A + E+ +
Sbjct: 1022 GLVKYDKKTGRLQSTELGRIASHYYIGHNSMLTYNQHLQPSIGNIELFRIFALSDEFKYI 1081
Query: 973 PIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLL 1031
P+R E+ + +++ +PH K N LLQA+ S +EG L D V
Sbjct: 1082 PVRQDEKLELAKMLGRVPVP-VKEGIDEPHAKINVLLQAYISRLKLEGLALMADLVYVTQ 1140
Query: 1032 SASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQ 1089
SA R+L+A+ ++ GW S+A A+++ +M + MW S L Q P +D+ ++ +
Sbjct: 1141 SAGRILRALFEICLRRGWASVAKNALDLCKMAERRMWPTMSPLRQFPRCPRDILQKSE 1198
Score = 281 (104.0 bits), Expect = 7.5e-25, Sum P(2) = 7.5e-25
Identities = 54/180 (30%), Positives = 101/180 (56%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ + D+++V L+ G +QV++++ ++ W +NL H V++ GTQ + + + + +
Sbjct: 1681 LSQTDKRIVSHLYNIGAIQVVIASRDVCWELNLTGHLVVVMGTQFFEGREHRYIDYPISE 1740
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM G+A RP D G G+++ + +YY +N+ LP+ES + + EI G
Sbjct: 1741 ILQMFGKASRPGQDKVGRGVLMVPTVKREYYKKFLNEALPVESHLQLYMHDAFVTEISQG 1800
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGL---SPEVLDITLGERITDLIH--TAANVLD 175
T+ + +++ +W+ YTY Y R+L NP YGL S E L L E + + + + A ++D
Sbjct: 1801 TIASTQDSVDWLTYTYFYRRLLANPSFYGLTDISHEGLSTFLSELVENTLKELSEAKIID 1860
Score = 248 (92.4 bits), Expect = 2.7e-271, Sum P(5) = 2.7e-271
Identities = 44/81 (54%), Positives = 62/81 (76%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEED- 366
+PITR++LRVELTITP+F WD+++HG + FW++VED DG+ IL H+ F+L+K Y E +
Sbjct: 1245 QPITRSMLRVELTITPNFVWDEELHGTAQDFWIMVEDCDGEEILFHDQFVLRKDYAESEM 1304
Query: 367 --HSLNFTVPIYEPLPPQHLI 385
H + FTVPI EP+PP + I
Sbjct: 1305 NEHLVEFTVPITEPMPPNYFI 1325
Score = 177 (67.4 bits), Expect = 2.7e-271, Sum P(5) = 2.7e-271
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 382 QHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVL 441
Q LILPE+FPP T LLD+Q PV AL+ Y+ LY +++ FN IQTQ F L+ ++DNV
Sbjct: 1344 QKLILPERFPPHTPLLDMQRAPVKALKRDEYQRLYPDWEYFNKIQTQTFKTLFESDDNVF 1403
Query: 442 VAA 444
+ A
Sbjct: 1404 IGA 1406
Score = 105 (42.0 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 198 LAKLLDRVPIPVKE-SLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRAL 251
L ++ DRVP+ + + + P K VLLQ + S+++L + L D A L A
Sbjct: 1926 LRRVYDRVPVKTSQVAFDSPHFKSFVLLQAHFSRMQLP-IDLAKDQEVIVSKALNLLSAC 1984
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQ 287
+I+ G A A+++S+MV + MW +PL+Q
Sbjct: 1985 VDILASEGHMN-AMNAMEMSQMVVQAMWDRDSPLKQ 2019
Score = 45 (20.9 bits), Expect = 1.0e-209, Sum P(5) = 1.0e-209
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 153 EVLDITLGERITDLIHTAANVLDRNNLVKYGRK 185
E+ D I DL+ T+ + + N LV G+K
Sbjct: 161 EMKDFDKKREIDDLLGTSLDPKEFNELVNLGKK 193
Score = 45 (20.9 bits), Expect = 1.0e-138, Sum P(3) = 1.0e-138
Identities = 46/199 (23%), Positives = 79/199 (39%)
Query: 253 EIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKP--- 309
++V W ++AE A +V M V+ R GI +EI K +D G+P
Sbjct: 372 KVVWTTRWRRVAEDA-DARNLVESEM--VEAGHR---GILDEIRGKTVSRDNDSGRPEKR 425
Query: 310 ITRTVLRVELTITPDFQWDDKVH--GYVELFWVIVEDNDGDYILHHEYFLLKKQYTE-ED 366
I ++ V+L P + K G V N + + H L+ +
Sbjct: 426 IKMDLMDVDLPKAPAAAEEKKTADGGLVRGLQPKRLINLENLVFHQGNHLMTNPNVKLPQ 485
Query: 367 HSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEAL-YQNYKLFNPI 425
S T YE + H+ P+ P E + + ++ L P + + + + K N I
Sbjct: 486 GSTKRTFKGYEEI---HVPQPKSKQEPGE----RKVAISEL--PEWARIGFGDAKELNRI 536
Query: 426 QTQVFAVLYNTEDNVLVAA 444
QT+ + + + N+LV A
Sbjct: 537 QTKCYPSAFQDDGNMLVCA 555
Score = 43 (20.2 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 1181 KEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKT 1225
+ G + V D + + L KRV L + L+ A V+ KKT
Sbjct: 986 RSPGLYSVGADYENDDALEQKRVDLVHSAAVLLEKAGLVKYDKKT 1030
Score = 37 (18.1 bits), Expect = 9.1e-136, Sum P(2) = 9.1e-136
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 8 LVEDLFCDGHVQVLVSTANLAWGVNLPAHTVII 40
LV D + ++ VS L P HT ++
Sbjct: 1327 LVSDRWMHSETRIAVSFQKLILPERFPPHTPLL 1359
Score = 37 (18.1 bits), Expect = 1.4e-77, Sum P(3) = 1.4e-77
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 705 MIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTL 764
+I S +D D A + H IQ+E L + G +G +S ++V + L
Sbjct: 295 LIVSARDIDAYWLQRQIGAAYSDAH---IQQEKATQALEIMEGKTEDGSPRSLRDVENDL 351
Query: 765 FE 766
E
Sbjct: 352 ME 353
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 1645 (584.1 bits), Expect = 5.5e-271, Sum P(3) = 5.5e-271
Identities = 375/965 (38%), Positives = 551/965 (57%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITR+++RVEL I F WDD + G E FW++VED DGD +LH+E F L K+Y +++H
Sbjct: 1229 QPITRSLVRVELVINSQFNWDDHLSGTSEAFWILVEDVDGDRLLHYEQFFLLKKYKDDEH 1288
Query: 368 SLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQT 427
+NFTVP+ EPLPP + I K L + +P+ S++ L K P T
Sbjct: 1289 IVNFTVPLLEPLPPCYFI---KIVSDRWLHSITKVPL------SFQRLIMPEKF--PAPT 1337
Query: 428 QVFAVL---YNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICA 484
+ + ++ +N +L F Q + V AP GSGKT+CA
Sbjct: 1338 PLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCA 1397
Query: 485 EFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG--MCVVELTVETAMD 542
E A+L +H + G AVYIAPI+ + +RY +W KF +LG +V+LT E + D
Sbjct: 1398 ELALL-HHWSQEDYGT--AVYIAPIQEIVDRRYEEWYGKFS-DLGDGKVLVKLTGERSQD 1453
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
LKL++ +I TP +WD+LS+RW+ + +Q+V +I DEL L+GG GP+ E++++R+R
Sbjct: 1454 LKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRIR 1513
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
Y+A Q+E IR+V LS S+ANA+DLGEW+G S +FNF P RP PL I +Q IT+F
Sbjct: 1514 YMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITHF 1573
Query: 663 EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
+ M AM+KP Y ++ K +VF P RK A+ A DL+ +S D D+ L S
Sbjct: 1574 PSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDE----YLFS 1629
Query: 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
E E + +++ L+ +L+ G+ Y+ E + +DQ +V L+ G IKV + S + +
Sbjct: 1630 LMENEAF-NKVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYS 1688
Query: 783 VPLTAH----LAT----GRKMLIL----TTLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830
+ ++ + T G++ + + LLQM+G + +++ KEY
Sbjct: 1689 LKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEY 1748
Query: 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
YKKFL E P+ESHL +LHD F +EI IE+KQDAVD+LTW++ RL NP YY L
Sbjct: 1749 YKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGL 1808
Query: 888 QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPS-NYGMIASYYYISYKTIECF 946
Q ++H +S+ LS+LVE T++DL R I ++D+ D C + N MIAS+Y I+Y T++ F
Sbjct: 1809 QDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTF 1868
Query: 947 SSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKAN 1006
+ SL+ +TKMKGLLE++ SA+EY QLPIR E+ ++ R+ + +NP DPH K+
Sbjct: 1869 ALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSF 1928
Query: 1007 ALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQG 1066
LL AHFS + L +DQ+ +L LL A VD +SS G L + ME+SQMVTQ
Sbjct: 1929 ILLAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQA 1988
Query: 1067 MWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIAR 1126
+W+ DS L Q+P+F L +RC + + VF M + L A
Sbjct: 1989 LWDRDSPLKQIPYFDDALIERCNKE---GVHDVFDIIDLDDEKRTELLHMDNAHLAKCAE 2045
Query: 1127 FCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGP-VYSNRYPKAKEEGW 1185
F N++P+ID+ ++++DSE+V A + L V L R+L E+ V + +P K E W
Sbjct: 2046 FINKYPDIDIDFEIEDSEDVHANSP-SVLIVQLTRELEEDEEVDTTVIAPYFPAQKTEHW 2104
Query: 1186 WLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFT 1245
WLV+ D KT LLAIK+++L R K++F P G K Y L DSYMG D E F
Sbjct: 2105 WLVISDDKT--LLAIKKITLGRSLTTKMEFVPPAMGTLK-YKLSCFSDSYMGVDYEKEFE 2161
Query: 1246 VDVKE 1250
+V E
Sbjct: 2162 CNVLE 2166
Score = 667 (239.9 bits), Expect = 5.5e-271, Sum P(3) = 5.5e-271
Identities = 127/188 (67%), Positives = 155/188 (82%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+R DRQ EDLF DG +QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTELSP D
Sbjct: 828 MRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQD 887
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QMLGRAGRPQ+D+YGEGIIIT HSELQYYLSLMNQQLPIESQF+ +LA+ LNAE+ LG
Sbjct: 888 VLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLG 947
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDIT-LGERITDLIHTAANVLDRNNL 179
TV++ ++ +W+ YTYLY RMLR+P LY + PE D L ++ DL+H+AA +L++ L
Sbjct: 948 TVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPEYDDDKYLVQKRADLLHSAAILLEKCKL 1007
Query: 180 VKYGRKSG 187
+ Y R+SG
Sbjct: 1008 LVYNRQSG 1015
Score = 503 (182.1 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 150/476 (31%), Positives = 239/476 (50%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGV------MRAVYIAPIEALAKQRYCDWERK 523
+L APTG+GKT A IL Q+ + + VYIAP++AL ++ ++ ++
Sbjct: 538 ILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKR 597
Query: 524 FGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 583
+ V ELT ++ + + + + QII++TPEKWD ++R+ YV V L IIDE+
Sbjct: 598 L-TPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEV 656
Query: 584 HLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGAS-SHGVFNFP 642
HL+ + GPVLE IVAR+ + ++R+V LS +L N D+ ++ G+F F
Sbjct: 657 HLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFD 716
Query: 643 PGVRPVPLEIQIQGV-DITNFEARMKAMTKPTYTAIMQHA-KNEKPALVFVPSRKYARLT 700
RP PL+ + G+ + T F+ RM+ + Y +MQHA KN+ L+FV SRK T
Sbjct: 717 STYRPCPLKQEFIGITEKTPFK-RMQTTNEACYEKVMQHAGKNQ--VLIFVHSRKETAKT 773
Query: 701 AVDLMIYSCKDSDQKSAFLLCS---AKEV-EPHVSIIQEEMLRATLRLGVGYLHEGLNKS 756
A I ++ LL S ++E+ +E L+ L G H G+ +
Sbjct: 774 A--RFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRRE 831
Query: 757 DQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKML-----ILTTL-----LQM 804
D++ LF G I+V V ++++ W V L AH + G ++ I T L LQM
Sbjct: 832 DRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQM 891
Query: 805 MGHAGRPLLDN-SEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIE 863
+G AGRP D E +I H+ +YY + + P+ES L D NAE+ G +
Sbjct: 892 LGRAGRPQFDTYGEGIIITAHS-ELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVR 950
Query: 864 NKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIME 919
+ +D VD+L +T+ + L V + D LV+ +DL + +I++E
Sbjct: 951 SIEDGVDWLGYTYLYVRMLRSPALYSVGPEYDDDKY--LVQKR-ADLLHSAAILLE 1003
Score = 335 (123.0 bits), Expect = 5.5e-271, Sum P(3) = 5.5e-271
Identities = 64/118 (54%), Positives = 91/118 (77%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGR 246
E+ K+ELAKLL+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DM SAGR
Sbjct: 1069 EEEKVELAKLLERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGR 1128
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
+ RA+FEI L+RGWS +A +L KM+ KR+W +PLRQF P+E++ ++EKK+F
Sbjct: 1129 IMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEF 1186
Score = 324 (119.1 bits), Expect = 7.2e-24, Sum P(3) = 7.2e-24
Identities = 78/299 (26%), Positives = 154/299 (51%)
Query: 801 LLQMMGHAGRPLLDN-SEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVA 859
+LQM+G AGRP D E +I H+ +YY + + P+ES L D NAE+
Sbjct: 888 VLQMLGRAGRPQFDTYGEGIIITAHS-ELQYYLSLMNQQLPIESQFMRRLADCLNAEVSL 946
Query: 860 GVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSH---RHLSDHLSELVENTISDLEAT 913
G + + +D VD+L +T+ R+ ++P Y++ G + ++L ++L+ + LE
Sbjct: 947 GTVRSIEDGVDWLGYTYLYVRMLRSPALYSV-GPEYDDDKYLVQKRADLLHSAAILLEKC 1005
Query: 914 RSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQL 972
+ ++ L + G +A+ YY+++ ++ ++ L T L V + + E+ +
Sbjct: 1006 KLLVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHI 1065
Query: 973 PIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLL 1031
P+R E+ + +L+ + +P K NALLQ++ S + ++G L D V
Sbjct: 1066 PVREEEKVELAKLLERVPIPIRE-RLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQ 1124
Query: 1032 SASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQE 1090
SA R+++A+ ++ GW S+A L+++ +M+ + +W S L Q P+ ++ +R ++
Sbjct: 1125 SAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEK 1183
Score = 236 (88.1 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 46/176 (26%), Positives = 101/176 (57%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
D+ +V+ L+ G ++VL+++ ++ + + ++ VI+ GTQ Y+ ++ + + +++QM
Sbjct: 1663 DQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQM 1722
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
LG + I++T ++ +YY +N+ LP+ES L + +EI T+++
Sbjct: 1723 LGFTASIGSSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLHDAFVSEISTQTIES 1782
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +W+ ++Y+Y R++ NP YGL ++ ++ E ++DL+ T N L L+
Sbjct: 1783 KQDAVDWLTWSYMYRRLVANPAYYGLQ-DITHESVSEFLSDLVETTMNDLSEARLI 1837
Score = 65 (27.9 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 391 PPPTELL---DLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
P P + + D +L+ + L S++A + N + N IQ+ ++ + + T++N+L+ A
Sbjct: 487 PAPNKAVLGADERLVKIKELPEWSHQA-FLNTQSLNRIQSHLYPIAFGTDENILLCA 542
Score = 39 (18.8 bits), Expect = 5.4e-171, Sum P(2) = 5.4e-171
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 172 NVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVK--ESLE 214
++++R ++ G ++ + + +EL + + V +P K ESLE
Sbjct: 60 SLVNRVSIADMGSRARIEKPSTLPLELTQEVQEVRLPRKDAESLE 104
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 1484 (527.5 bits), Expect = 2.0e-242, Sum P(4) = 2.0e-242
Identities = 336/798 (42%), Positives = 474/798 (59%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFLL-KKQY-TE 364
+PITRTVLRV L ITPDF W+D+VHG V E +W+ VED D+I H EYF++ KKQ T+
Sbjct: 1198 QPITRTVLRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITK 1257
Query: 365 EDHSLNFTVPIYEPLPPQHLI--LPEKF--PPPTELLDLQLLPVTALQNPSYEALYQNYK 420
E L FT+PI+EPLP Q+ I + +++ +++ Q L + P E L
Sbjct: 1258 EPQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPL 1317
Query: 421 LFNPIQTQVFAVLYN-TEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
+ + VLY T N + + L N++L APTGSG
Sbjct: 1318 PVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDC-----------NVLLG---APTGSG 1363
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG VVELT +
Sbjct: 1364 KTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERIEDWKVRIEEKLGKKVVELTGDV 1420
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D++ + + +I++TPEKWD +SR W+ R YVQ+VS+ IIDE+HL+G + GPVLEVIV+
Sbjct: 1421 TPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLEVIVS 1480
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
R +I+S E +R+V LST+LANA+DL +W+ + G+FNF P VRPVPLE+ IQG
Sbjct: 1481 RTNFISSHTEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHIQGFPG 1540
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
++ RM M KP + AI H+ KP L+FV SR+ RLT++DL+ + + D K +L
Sbjct: 1541 QHYCPRMARMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQ-WL 1598
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
+E+ + +++ L+ TL G+G H GL++ D++ V LF KI+V + +S++
Sbjct: 1599 KMDEREMNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTL 1658
Query: 780 CWEVPLTAHLAT--------GR-KMLI---LTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827
W V AHL G+ + + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1659 AWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIK 1718
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNY 884
K++YKKFLYE FPVES L L D+ NAEI AG I +KQDA+DY+TWT+ RL NP Y
Sbjct: 1719 KDFYKKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTY 1778
Query: 885 YNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTI 943
YNL VSH ++ +LS LVE ++ DLE + I I ED+ + P YG IASYYY+ + TI
Sbjct: 1779 YNLDNVSHDTMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTI 1838
Query: 944 ECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDP-H 1002
F L ++ ++ LL +L +A EY LP+R E+++ L H NP D H
Sbjct: 1839 GMFKDQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAKHLPIE-VNPHSFDSSH 1897
Query: 1003 VKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1061
K + LLQAHFS + + D + VL A R+ QAM+DV + +GWL AL + Q
Sbjct: 1898 TKTHLLLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAALNITNLVQ 1957
Query: 1062 MVTQGMWEHDSMLLQLPH 1079
MV QG W HDS LL +P+
Sbjct: 1958 MVVQGRWIHDSSLLTVPN 1975
Score = 602 (217.0 bits), Expect = 5.9e-65, Sum P(3) = 5.9e-65
Identities = 222/862 (25%), Positives = 392/862 (45%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ K N IQ+ VF YNT +N+L+ A P A NI ++ L
Sbjct: 480 FKGMKRLNRIQSIVFETAYNTNENMLICA----------PTG----AGKTNIAMLTVLHE 525
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535
+ +++ + + VY+AP++ALA + + ++ + LG+ V EL
Sbjct: 526 IRQH----VQHGVIKKDE-------FKIVYVAPMKALAAEMTNYFSKRL-EPLGITVKEL 573
Query: 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVL 594
T + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVL
Sbjct: 574 TGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLVKLLILDEVHLLHEDRGPVL 633
Query: 595 EVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEI 652
E IVAR +R + S ++ IRI+ LS +L N D+ ++ + + G+F F RPVPL
Sbjct: 634 ESIVARTLRQVES-TQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQ 692
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
G+ TN ++ M + Y +++ +VFV +R TA+ L K++
Sbjct: 693 TFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQVMVFVHARNATVRTAMALR-EKAKNN 751
Query: 713 DQKSAFLLCSAKE---VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK 769
FL + E V + + LR G H G+ + D+ +V LF G
Sbjct: 752 GHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGH 811
Query: 770 IKVCVMSSSMCWEVPLTAHLAT--GRKM----------LILTTLLQMMGHAGRPLLDNSE 817
IKV V ++++ W V L AH G ++ L + ++Q+ G AGRP D
Sbjct: 812 IKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 871
Query: 818 KCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF- 876
+ +I+ +Y L + P+ES L DN NAEI G + N ++AV ++++T+
Sbjct: 872 EGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYL 931
Query: 877 --RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMDLCPS- 927
R+ NP Y G+SH+ L H +LV L+ R I E+ S
Sbjct: 932 YVRMRANPLVY---GISHKAYQMDPGLEKHREQLVIEVGRKLDKARMIRFEERTGFFSST 988
Query: 928 NYGMIASYYYISYKTIECFSSSLTSKTKMKG-LLEVLASASEYAQLPIRPGEEELVRRLI 986
+ G AS+YYI Y TIE F+ L K +G +L +++ A E+ Q+ +R E E + L+
Sbjct: 989 DLGRTASHYYIKYNTIETFNE-LFDAHKTEGDILAIVSKAEEFEQIKVREEEIEELDTLL 1047
Query: 987 NHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVIS 1045
N A + + K N LLQ + S ++ +L D V +A+R+++A+ ++
Sbjct: 1048 NDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVAQNAARIVRALFEIAL 1107
Query: 1046 SNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXX 1105
W ++ + +S+++ + +W S L Q + + +E +++ TV
Sbjct: 1108 RKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEE---KNL-TV------ 1157
Query: 1106 XXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGG 1165
+M D++ +I + I + K Q + + + T+Q + L
Sbjct: 1158 --------DKMKDMRKDEIGHMLHHV-KIGLKVK-QCVHQIPSIAMEATIQPITRTVLRV 1207
Query: 1166 RTELGP--VYSNRYPKAKEEGWWLVVDDAKTNQL-----LAIKRVSLQRKSRAKLDFAAP 1218
R + P ++++ E WW+ V+D + + I++ + K L F P
Sbjct: 1208 RLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIP 1267
Query: 1219 V-EGGKKTYTLDFMCDSYMGCD 1239
+ E Y + + D ++G +
Sbjct: 1268 IFEPLPSQYYIRAVSDRWLGAE 1289
Score = 548 (198.0 bits), Expect = 2.0e-242, Sum P(4) = 2.0e-242
Identities = 103/193 (53%), Positives = 140/193 (72%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH V+IKGTQ+Y ++G++ +L LD
Sbjct: 795 MLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILD 854
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 855 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIALG 914
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA WI YTYLY RM NP++YG+S + +D L + L+ LD+
Sbjct: 915 TVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDKAR 974
Query: 179 LVKYGRKSGYFQS 191
++++ ++G+F S
Sbjct: 975 MIRFEERTGFFSS 987
Score = 351 (128.6 bits), Expect = 5.4e-40, Sum P(3) = 5.4e-40
Identities = 65/179 (36%), Positives = 112/179 (62%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR+ VE+LF + +QVL++T+ LAWGVN PAH VI+KGT+ Y+ + + + D++QM
Sbjct: 1636 DRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQM 1695
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ+D G+ +I+ + +Y + + P+ES + LA+ LNAEI GT+ +
Sbjct: 1696 MGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNAEIAAGTITS 1755
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
++A ++I +TY + R++ NP Y L V T+ + ++ L+ + L+ + ++ G
Sbjct: 1756 KQDAMDYITWTYFFRRLIMNPTYYNLD-NVSHDTMNKYLSSLVEKSLFDLECSYCIEIG 1813
Score = 227 (85.0 bits), Expect = 2.0e-242, Sum P(4) = 2.0e-242
Identities = 53/125 (42%), Positives = 78/125 (62%)
Query: 190 QSEKIKMELAKLL-DRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ E+I+ EL LL D +P +E KIN+LLQTYIS+ +L+ SL SD +
Sbjct: 1036 REEEIE-ELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVAQN 1094
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P +L KLE+K+
Sbjct: 1095 AARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEEKN 1154
Query: 304 FFLGK 308
+ K
Sbjct: 1155 LTVDK 1159
Score = 160 (61.4 bits), Expect = 2.0e-242, Sum P(4) = 2.0e-242
Identities = 35/102 (34%), Positives = 60/102 (58%)
Query: 1151 EDTTLQVVLER-DLG--GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQR 1207
++ LQ+ L+R +G G+ + V + R+PK K+EGW+L++ + +L+A+KR R
Sbjct: 2088 QEYVLQIHLQRTQMGYQGKQDSKAV-APRFPKVKDEGWFLILGEVDKKELIALKRTGYVR 2146
Query: 1208 -KSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDV 1248
++ + F P GK YTL M DSY+G DQ+Y +++
Sbjct: 2147 NRNTVSVAFYTPETPGKCIYTLYLMSDSYLGMDQQYDIYLNI 2188
Score = 72 (30.4 bits), Expect = 2.5e-61, Sum P(3) = 2.5e-61
Identities = 26/94 (27%), Positives = 41/94 (43%)
Query: 192 EKIKMELAKLLDRVPIPVK-ESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AG 245
+++ ELAK L PI V S + K ++LLQ + S L +D A
Sbjct: 1874 DQMNSELAKHL---PIEVNPHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTKTVLDQAI 1930
Query: 246 RLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMW 279
R+ +A+ ++ GW A L +MV + W
Sbjct: 1931 RICQAMLDVTAHHGWLVAALNITNLVQMVVQGRW 1964
Score = 50 (22.7 bits), Expect = 4.5e-168, Sum P(3) = 4.5e-168
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 238 LTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQ 282
L S S L LFE++ G+ +L EK L+ ++ +R + Q
Sbjct: 263 LASPKSGDELQNELFELLGPEGF-ELIEKLLQNRSVIVERSLTCQ 306
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 1471 (522.9 bits), Expect = 2.9e-242, Sum P(4) = 2.9e-242
Identities = 338/799 (42%), Positives = 474/799 (59%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TE 364
+PITRTVLRV L+I+PDF W+D+VHG V E +W+ VED D+I H EYFL LKKQ ++
Sbjct: 1189 QPITRTVLRVTLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISK 1248
Query: 365 EDHSLNFTVPIYEPLPPQHLI--LPEKF--PPPTELLDLQLLPVTALQNPSYEALYQNYK 420
E L FT+PI+EPLP Q+ I + +++ +++ Q L + P E L
Sbjct: 1249 EAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPL 1308
Query: 421 LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARL-PAKQRITAALPNIIL-VLQLAPTGS 478
+ + + LYN F+ P + +I L + VL APTGS
Sbjct: 1309 PVTALGCEAYEALYN---------------FSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 479 GKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVE 538
GKT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 1354 GKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGD 1410
Query: 539 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 598
D+K + K +I++TPEKWD +SR W+ R YV+QV++ IIDE+HL+G + GPVLEVIV
Sbjct: 1411 VTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIV 1470
Query: 599 ARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVD 658
+R +I+S E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG
Sbjct: 1471 SRTNFISSHTEKPVRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHIQGFP 1530
Query: 659 ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718
++ RM +M KPT+ AI H+ KP L+FV SR+ RLTA++L+ + + D K +
Sbjct: 1531 GQHYCPRMASMNKPTFQAIRSHSP-AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQ-W 1588
Query: 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
L +E+E + I++ L+ TL G+G H GL++ D++ V LF KI+V + +S+
Sbjct: 1589 LNMDEREMENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATST 1648
Query: 779 MCWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
+ W V AHL T R + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1649 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDI 1708
Query: 827 HKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPN 883
K++YKKFLYE FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+
Sbjct: 1709 KKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPS 1768
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKT 942
YYNL VSH ++ LS LVE ++ +LE + I I ED+ + P YG IASYYY+ ++T
Sbjct: 1769 YYNLSDVSHDSVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQT 1828
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-P 1001
++ F L + + LL +L+ A EY LP+R E+ + L +NP D P
Sbjct: 1829 VKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLE-SNPHSFDSP 1887
Query: 1002 HVKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVS 1060
H KA+ LLQAH S + + D + VL A R+ QAM+DV + GWL L +
Sbjct: 1888 HTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWLVTVLNITSLV 1947
Query: 1061 QMVTQGMWEHDSMLLQLPH 1079
QMV QG W DS LL +PH
Sbjct: 1948 QMVIQGRWLKDSSLLTIPH 1966
Score = 616 (221.9 bits), Expect = 6.5e-56, P = 6.5e-56
Identities = 225/863 (26%), Positives = 396/863 (45%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ + N IQ+ VF YNT +N+L+ A P A NI ++ L
Sbjct: 471 FKGMRRLNRIQSIVFETAYNTNENMLICA----------PTG----AGKTNIAMLTVL-- 514
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535
I F Q + + VY+AP++ALA + + ++ + LG+ V EL
Sbjct: 515 ----HEIRQHF-----QQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGIVVKEL 564
Query: 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVL 594
T + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVL
Sbjct: 565 TGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVL 624
Query: 595 EVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEI 652
E IVAR +R + S ++ IRI+ LS +L N D+ ++ + G+F F RPVPL
Sbjct: 625 ESIVARTLRQVES-TQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVPLGQ 683
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
G+ N ++ M + Y ++++ K +VFV +R TA+ L I K++
Sbjct: 684 TFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNN 742
Query: 713 DQKSAFLLCSAKE---VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK 769
Q FL E E V + +R G H G+ + D+ +V +LF G
Sbjct: 743 GQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGH 802
Query: 770 IKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMMGHAGRPLLDNSE 817
IKV V ++++ W V L AH + G ++ L + ++Q+ G AGRP D
Sbjct: 803 IKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 862
Query: 818 KCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF- 876
+ +I+ +Y L + P+ES L DN NAEI G + N ++AV ++++T+
Sbjct: 863 EGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYL 922
Query: 877 --RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMDLCPS- 927
R+ NP Y G+SH+ L+ H +LV L+ R I E+ S
Sbjct: 923 YVRMRANPLVY---GISHKAYQIDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSST 979
Query: 928 NYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGE-EELVRRLI 986
+ G AS+YYI Y TIE F+ + + +++ A E+ Q+ +R E EEL L
Sbjct: 980 DLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDTLLS 1039
Query: 987 NHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVIS 1045
N S A + + K N LLQ + S ++ +L D V +A+R+++A+ ++
Sbjct: 1040 NFCELS-APGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVAQNAARIVRALFEIAL 1098
Query: 1046 SNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXX 1105
W ++ + +S+++ + +W S L Q + R +E +++ TV
Sbjct: 1099 RKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEE---KNL-TV------ 1148
Query: 1106 XXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGG 1165
++ D++ +I + NI + K Q + + + ++Q + L
Sbjct: 1149 --------DKLKDMRKDEIGHILHHV-NIGLKVK-QCVHQIPSVTMEASIQPITRTVLRV 1198
Query: 1166 RTELGPVYS--NRYPKAKEEGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKLDFAA 1217
+ P +S ++ E WW+ V+D + + L +K+ + ++++ L F
Sbjct: 1199 TLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQL-LVFTI 1257
Query: 1218 PV-EGGKKTYTLDFMCDSYMGCD 1239
P+ E Y + + D ++G +
Sbjct: 1258 PIFEPLPSQYYIRAVSDRWLGAE 1280
Score = 564 (203.6 bits), Expect = 2.9e-242, Sum P(4) = 2.9e-242
Identities = 107/193 (55%), Positives = 140/193 (72%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE LF +GH++VLV TA LAWGVNLPAH VIIKGTQ+Y ++G++ +L LD
Sbjct: 786 MLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILD 845
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 846 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALG 905
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA WI YTYLY RM NP++YG+S + +D TL + L+ LD+
Sbjct: 906 TVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDKAR 965
Query: 179 LVKYGRKSGYFQS 191
++++ ++GYF S
Sbjct: 966 MIRFEERTGYFSS 978
Score = 350 (128.3 bits), Expect = 1.9e-41, Sum P(3) = 1.9e-41
Identities = 65/179 (36%), Positives = 115/179 (64%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR+ VE+LF + +QVL++T+ LAWGVN PAH VIIKGT+ Y+ + + + D++QM
Sbjct: 1627 DRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQM 1686
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ+D G+ +I+ + +Y + + P+ES + L++ LNAEI GT+ +
Sbjct: 1687 MGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITS 1746
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
++A ++I +TY + R++ NP Y LS +V ++ + +++L+ + L+ + ++ G
Sbjct: 1747 KQDAMDYITWTYFFRRLIMNPSYYNLS-DVSHDSVNKFLSNLVEKSLVELEHSYCIEIG 1804
Score = 213 (80.0 bits), Expect = 2.9e-242, Sum P(4) = 2.9e-242
Identities = 50/125 (40%), Positives = 76/125 (60%)
Query: 190 QSEKIKMELAKLLDRV-PIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ E+I+ EL LL + +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1027 REEEIE-ELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVAQN 1085
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K+
Sbjct: 1086 AARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEEKN 1145
Query: 304 FFLGK 308
+ K
Sbjct: 1146 LTVDK 1150
Score = 170 (64.9 bits), Expect = 2.9e-242, Sum P(4) = 2.9e-242
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 1137 SYKVQDSENVRA-GGEDTTLQVVLER-DLG---GRTELGPVYSNRYPKAKEEGWWLVVDD 1191
S K D+ VR ++ LQV L+R LG G+ + V + R+PK+K+EGW+L++ +
Sbjct: 2063 SDKHSDNRWVRLHADQEYVLQVSLQRVSLGFHKGKQDSHAV-TPRFPKSKDEGWFLILGE 2121
Query: 1192 AKTNQLLAIKRVSLQRKSR-AKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKE 1250
+L+A+KRV R + F P G+ YTL FM D Y+G DQ+Y + V
Sbjct: 2122 VDKRELIALKRVGYVRSHHMVSISFYTPEVPGRYIYTLYFMSDCYLGLDQQYDIHLHVTP 2181
Query: 1251 A 1251
A
Sbjct: 2182 A 2182
Score = 77 (32.2 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGR 246
+ + ELAK L P S + P K ++LLQ ++S+ L +D A R
Sbjct: 1865 DHMNSELAKCLPLESNP--HSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALR 1922
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEIL 296
+ +A+ ++ +GW L +MV + W + L I N L
Sbjct: 1923 VCQAMLDVAAHQGWLVTVLNITSLVQMVIQGRWLKDSSLLTIPHIENHHL 1972
Score = 48 (22.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 838 AFPVESH-LHHFLHDNFNAEIVAGV-IENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHL 895
AF + H L HF N E + ++ K+ D+L L + P + + L
Sbjct: 168 AFSFDMHDLDHFDELPINGESQKTISLDYKKFLTDHLQDHSTLNRKP----AEKTNDSFL 223
Query: 896 SDHLSELVENTISDL-EATRSIIMEDDMDLCPSNYGMIAS 934
+ + + T++++ EATR +ED LC + Y M+AS
Sbjct: 224 WCEVEKYLNATLNEMAEATR---IED---LCCTLYDMLAS 257
Score = 42 (19.8 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 327 WDDKVHGYVEL-FWVIVEDNDGD--YI-LH--HEYFLLKKQYTEEDHSLNFTVPIYEPLP 380
WDD G+ E+ + D D ++ LH EY L Q + + SL F ++
Sbjct: 2046 WDDAAEGHDEISITTVASDKHSDNRWVRLHADQEYVL---QVSLQRVSLGF----HKGKQ 2098
Query: 381 PQHLILPEKFP 391
H + P +FP
Sbjct: 2099 DSHAVTP-RFP 2108
Score = 38 (18.4 bits), Expect = 1.9e-166, Sum P(3) = 1.9e-166
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 292 PNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWD 328
P I++K D L K +LR ++ +T +WD
Sbjct: 556 PLGIVVKELTGDMQLSK---NEILRTQMLVTTPEKWD 589
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 1467 (521.5 bits), Expect = 1.3e-240, Sum P(4) = 1.3e-240
Identities = 345/849 (40%), Positives = 494/849 (58%)
Query: 261 SQLAEKALKLSKMVTKRMWSVQTPLRQFN-GIP-NEILMKLEKKDFFLG-KPITRTVLRV 317
++L EK L + K+ R + L N G+ + + ++ +PITRTVLRV
Sbjct: 1139 TRLEEKNLTVDKLKDMRKDEIGHMLHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRV 1198
Query: 318 ELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TEEDHSLNFTVP 374
L+I PDF W+D+VHG V E +W+ VED D+I H EYFL LKKQ ++E L FT+P
Sbjct: 1199 TLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIP 1258
Query: 375 IYEPLPPQHLI--LPEKF--PPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVF 430
I+EPLP Q+ I + +++ +++ Q L + P E L + + +
Sbjct: 1259 IFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCEAY 1318
Query: 431 AVLYNTEDNVLVAALSRKLMFARL-PAKQRITAALPNIIL-VLQLAPTGSGKTICAEFAI 488
LYN F+ P + +I L + VL APTGSGKT+ AE AI
Sbjct: 1319 EALYN---------------FSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAI 1363
Query: 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEK 548
R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT + D+K + K
Sbjct: 1364 FRVFNKYPTS---KAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAK 1420
Query: 549 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQV 608
+I++TPEKWD +SR W+ R YV+QV++ IIDE+HL+G + GPVLEVIV+R +I+S
Sbjct: 1421 ADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHT 1480
Query: 609 ENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKA 668
E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG ++ RM +
Sbjct: 1481 EKPVRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMAS 1540
Query: 669 MTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728
M KPT+ AI H+ KP L+FV SR+ RLTA++L+ + + D K +L +E+E
Sbjct: 1541 MNKPTFQAIRSHSP-AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMEN 1598
Query: 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH 788
+ +++ L+ TL G+G H GL++ D++ V LF K++V + +S++ W V AH
Sbjct: 1599 IIGTLRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAH 1658
Query: 789 LA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836
L T R + +T +LQMMG AGRP D+ K VIL H K++YKKFLY
Sbjct: 1659 LVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLY 1718
Query: 837 EAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHR 893
E FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+YYNL VSH
Sbjct: 1719 EPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLSDVSHD 1778
Query: 894 HLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTS 952
++ LS LVE ++ +LE + I I ED+ + P YG IASYYY+ ++T++ F L
Sbjct: 1779 SVNKFLSSLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKP 1838
Query: 953 KTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-PHVKANALLQA 1011
+ + LL +L+ A EY LP+R E+ + L +NP D PH KA+ LLQA
Sbjct: 1839 ECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLE-SNPHSFDSPHTKAHLLLQA 1897
Query: 1012 HFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEH 1070
H S + + D + VL A R+ QAM+DV ++ GWL AL + QMV QG W
Sbjct: 1898 HLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTALNITNLVQMVIQGRWLK 1957
Query: 1071 DSMLLQLPH 1079
DS LL +P+
Sbjct: 1958 DSSLLSIPN 1966
Score = 626 (225.4 bits), Expect = 6.5e-68, Sum P(2) = 6.5e-68
Identities = 200/704 (28%), Positives = 334/704 (47%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ + N IQ+ VF YNT +N+L+ A P A NI ++ L
Sbjct: 471 FKGMRRLNRIQSIVFETAYNTNENMLICA----------PTG----AGKTNIAMLTVL-- 514
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535
I F Q + + VY+AP++ALA + + ++ + LG+ V EL
Sbjct: 515 ----HEIRQHF-----QQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGIVVKEL 564
Query: 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVL 594
T + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVL
Sbjct: 565 TGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVL 624
Query: 595 EVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEI 652
E IVAR +R + S ++ IRI+ LS +L N D+ ++ + G+F F RPVPL
Sbjct: 625 ESIVARTLRQVES-TQSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQ 683
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
GV N ++ M + Y ++++ K +VFV +R TA+ L I K+S
Sbjct: 684 TFLGVKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNS 742
Query: 713 DQKSAFLLCSAKE---VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK 769
Q S FL E E V + + +R G H G+ + D+ +V LF G
Sbjct: 743 GQISCFLPSQGSEYGHAEKQVQKSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGH 802
Query: 770 IKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMMGHAGRPLLDNSE 817
IKV V ++++ W V L AH + G ++ L + ++Q+ G AGRP D
Sbjct: 803 IKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFG 862
Query: 818 KCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF- 876
+ +I+ +Y L + P+ES L DN NAEI G + N ++AV ++++T+
Sbjct: 863 EGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYL 922
Query: 877 --RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMDLCPS- 927
R+ NP Y G+SH+ L+ H +LV L+ R I E+ S
Sbjct: 923 YVRMRANPLVY---GISHKAYQVDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSST 979
Query: 928 NYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLIN 987
+ G AS+YYI Y TIE F+ + + +++ A E+ Q+ +R E E + L+N
Sbjct: 980 DLGRTASHYYIKYNTIETFNEFFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDALLN 1039
Query: 988 HQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISS 1046
+ A + + K N LLQ + S M+ +L D V +A+R+++A+ ++
Sbjct: 1040 NFCELAAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALR 1099
Query: 1047 NGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQE 1090
W ++ + +S+++ + +W S L Q + R +E
Sbjct: 1100 KRWPAMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEE 1143
Score = 560 (202.2 bits), Expect = 1.3e-240, Sum P(4) = 1.3e-240
Identities = 106/193 (54%), Positives = 141/193 (73%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH VIIKGTQ+Y ++G++ +L LD
Sbjct: 786 MLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILD 845
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 846 VMQIFGRAGRPQFDRFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIALG 905
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA WI YTYLY RM NP++YG+S + +D TL + L+ LD+
Sbjct: 906 TVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQVDPTLAKHREQLVIEVGRKLDKAR 965
Query: 179 LVKYGRKSGYFQS 191
++++ ++GYF S
Sbjct: 966 MIRFEERTGYFSS 978
Score = 350 (128.3 bits), Expect = 6.2e-41, Sum P(3) = 6.2e-41
Identities = 66/179 (36%), Positives = 114/179 (63%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR+ VE+LF + VQVL++T+ LAWGVN PAH VIIKGT+ Y+ + + + D++QM
Sbjct: 1627 DRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQM 1686
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ+D G+ +I+ + +Y + + P+ES + L++ LNAEI GT+ +
Sbjct: 1687 MGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITS 1746
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
++A ++I +TY + R++ NP Y LS +V ++ + ++ L+ + L+ + ++ G
Sbjct: 1747 KQDAMDYITWTYFFRRLIMNPSYYNLS-DVSHDSVNKFLSSLVEKSLVELEHSYCIEIG 1804
Score = 215 (80.7 bits), Expect = 1.3e-240, Sum P(4) = 1.3e-240
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 190 QSEKIKMELAKLLDRV-PIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ E+I+ EL LL+ + +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1027 REEEIE-ELDALLNNFCELAAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 1085
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K+
Sbjct: 1086 AARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKN 1145
Query: 304 FFLGK 308
+ K
Sbjct: 1146 LTVDK 1150
Score = 161 (61.7 bits), Expect = 1.3e-240, Sum P(4) = 1.3e-240
Identities = 42/121 (34%), Positives = 64/121 (52%)
Query: 1137 SYKVQDSENVRA-GGEDTTLQVVLER-DLG---GRTELGPVYSNRYPKAKEEGWWLVVDD 1191
S K D+ +R ++ LQV L+R G G+ + V + R+PK K+EGW+L++ +
Sbjct: 2063 SDKRNDNRWIRLHADQEYVLQVSLQRVHFGFHKGKQDSHAV-TPRFPKLKDEGWFLILGE 2121
Query: 1192 AKTNQLLAIKRVSLQRKSRA-KLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKE 1250
+L+A+KRV R + F P G+ YTL M D Y+G DQ+Y + V E
Sbjct: 2122 VDKRELIALKRVGYVRNHHVVSISFYTPELPGRYIYTLYLMSDCYLGLDQQYDLHLHVTE 2181
Query: 1251 A 1251
A
Sbjct: 2182 A 2182
Score = 81 (33.6 bits), Expect = 1.1e-63, Sum P(3) = 1.1e-63
Identities = 29/107 (27%), Positives = 47/107 (43%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGR 246
+ + ELAK L P S + P K ++LLQ ++S+ L +D A R
Sbjct: 1865 DHMNSELAKCLPLESNP--HSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALR 1922
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPN 293
+ +A+ ++ +GW A L +MV + W + L IPN
Sbjct: 1923 VCQAMLDVAANQGWLVTALNITNLVQMVIQGRWLKDSSLLS---IPN 1966
Score = 50 (22.7 bits), Expect = 4.2e-66, Sum P(3) = 4.2e-66
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 327 WDDKVHGYVEL-FWVIVED--NDGDYI-LH--HEYFL 357
WDD V G+ EL + D ND +I LH EY L
Sbjct: 2046 WDDSVEGHGELSITTLTSDKRNDNRWIRLHADQEYVL 2082
Score = 50 (22.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 29/112 (25%), Positives = 49/112 (43%)
Query: 828 KEYYKKFLYE---AFPVESH-LHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPN 883
+EY + L+ AF + H L HF N E + D +L F+ P
Sbjct: 155 EEYGDRVLFGKNLAFSFDMHDLDHFDELPINGESQKTI---SLDYKKFLNEHFQEHSTPE 211
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDL-EATRSIIMEDDMDLCPSNYGMIAS 934
++ + L + + + T++++ EATR +ED LC + Y M+AS
Sbjct: 212 LKPVEKTNDSFLWCEVEKYLNATLNEMAEATR---IED---LCCTLYDMLAS 257
Score = 48 (22.0 bits), Expect = 6.7e-66, Sum P(3) = 6.7e-66
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 1183 EGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKLDFAAPV-EGGKKTYTLDFMCDSY 1235
E WW+ V+D + + L +K+ + ++++ L F P+ E Y + + D +
Sbjct: 1218 EPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQL-LVFTIPIFEPLPSQYYIRAVSDRW 1276
Query: 1236 MGCD 1239
+G +
Sbjct: 1277 LGAE 1280
Score = 38 (18.4 bits), Expect = 5.0e-165, Sum P(3) = 5.0e-165
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 292 PNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWD 328
P I++K D L K +LR ++ +T +WD
Sbjct: 556 PLGIVVKELTGDMQLSK---NEILRTQMLVTTPEKWD 589
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 1455 (517.2 bits), Expect = 2.5e-239, Sum P(4) = 2.5e-239
Identities = 334/799 (41%), Positives = 473/799 (59%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TE 364
+PITRTVLRV L+I DF W+D+VHG V E +W+ VED D+I H EYFL LKKQ ++
Sbjct: 1189 QPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISK 1248
Query: 365 EDHSLNFTVPIYEPLPPQHLI--LPEKF--PPPTELLDLQLLPVTALQNPSYEALYQNYK 420
E L FT+PI+EPLP Q+ I + +++ +++ Q L + P E L
Sbjct: 1249 EAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPL 1308
Query: 421 LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARL-PAKQRITAALPNIIL-VLQLAPTGS 478
+ + + LYN F+ P + +I L + VL APTGS
Sbjct: 1309 PITALGCKAYEALYN---------------FSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 479 GKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVE 538
GKT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 1354 GKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGD 1410
Query: 539 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 598
D+K + K +I++TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIV
Sbjct: 1411 VTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIV 1470
Query: 599 ARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVD 658
+R +I+S E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG
Sbjct: 1471 SRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFP 1530
Query: 659 ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718
++ RM +M KP + AI H+ KP L+FV SR+ RLTA++L+ + + D K +
Sbjct: 1531 GQHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQ-W 1588
Query: 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
L +E+E ++ +++ L+ TL G+G H GL++ D++ V LF K++V + +S+
Sbjct: 1589 LNMDEREMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATST 1648
Query: 779 MCWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
+ W V AHL T R + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1649 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDI 1708
Query: 827 HKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPN 883
K++YKKFLYE FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+
Sbjct: 1709 KKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPS 1768
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKT 942
YYNL VSH ++ LS L+E ++ +LE + I I ED+ + P YG IASYYY+ ++T
Sbjct: 1769 YYNLGDVSHDSVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQT 1828
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-P 1001
++ F L + + LL +L+ A EY LP+R E+ + L +NP D P
Sbjct: 1829 VKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIE-SNPHSFDSP 1887
Query: 1002 HVKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVS 1060
H KA+ LLQAH S + + D + VL A R+ QAM+DV ++ GWL L +
Sbjct: 1888 HTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLI 1947
Query: 1061 QMVTQGMWEHDSMLLQLPH 1079
QMV QG W DS LL LP+
Sbjct: 1948 QMVIQGRWLKDSSLLTLPN 1966
Score = 598 (215.6 bits), Expect = 2.1e-64, Sum P(3) = 2.1e-64
Identities = 200/706 (28%), Positives = 331/706 (46%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ K N IQ+ VF YNT +N+L+ A P A NI ++ L
Sbjct: 471 FKGMKRLNRIQSIVFETAYNTNENMLICA----------PTG----AGKTNIAMLTVL-- 514
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535
I F Q + + VY+AP++ALA + + R+ + LG+ V EL
Sbjct: 515 ----HEIRQHF-----QQGVIKKNEFKIVYVAPMKALAAEMTDYFSRRL-EPLGIIVKEL 564
Query: 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVL 594
T + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVL
Sbjct: 565 TGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHEDRGPVL 624
Query: 595 EVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEI 652
E IVAR +R + S ++ IRI+ LS +L N D+ ++ + + G+F F RPVPL
Sbjct: 625 ESIVARTLRQVES-TQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQ 683
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
G+ N ++ M + Y +++ K +VFV +R TA+ L I K+
Sbjct: 684 TFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNC 742
Query: 713 DQKSAFLLCSAKE---VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK 769
F + E V + + +R G H G+ + D+ +V LF G
Sbjct: 743 GHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGH 802
Query: 770 IKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMMGHAGRPLLDNSE 817
IKV V ++++ W V L AH + G ++ L + ++Q+ G AGRP D
Sbjct: 803 IKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 862
Query: 818 KCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF- 876
+ +I+ +Y L + P+ES L DN NAEI G + N ++AV ++++T+
Sbjct: 863 EGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYL 922
Query: 877 --RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMDLCPS- 927
R+ NP Y G+SH+ L H +LV L+ + I E+ S
Sbjct: 923 YVRMRANPLAY---GISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSST 979
Query: 928 NYGMIASYYYISYKTIECFSSSLTSKTKMKG-LLEVLASASEYAQLPIRPGE-EELVRRL 985
+ G AS+YYI Y TIE F+ L K +G + +++ A E+ Q+ +R E EEL L
Sbjct: 980 DLGRTASHYYIKYNTIETFNE-LFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLL 1038
Query: 986 INHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVI 1044
N S + + K N LLQ + S M+ +L D V +A+R+++A+ ++
Sbjct: 1039 SNFCELSTPGG-VENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIA 1097
Query: 1045 SSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQE 1090
W ++ + +S+++ + +W S L Q + R +E
Sbjct: 1098 LRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEE 1143
Score = 554 (200.1 bits), Expect = 2.5e-239, Sum P(4) = 2.5e-239
Identities = 105/193 (54%), Positives = 140/193 (72%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH VIIKGTQ+Y ++G++ +L LD
Sbjct: 786 MLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILD 845
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+ LA+ LNAEI LG
Sbjct: 846 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIALG 905
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA WI YTYLY RM NP+ YG+S + +D TL + L+ LD+
Sbjct: 906 TVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDKAQ 965
Query: 179 LVKYGRKSGYFQS 191
++++ ++GYF S
Sbjct: 966 MIRFEERTGYFSS 978
Score = 344 (126.2 bits), Expect = 1.4e-40, Sum P(4) = 1.4e-40
Identities = 66/179 (36%), Positives = 113/179 (63%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR+ VE+LF + VQVL++T+ LAWGVN PAH VIIKGT+ Y+ + + + D++QM
Sbjct: 1627 DRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQM 1686
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ+D G+ +I+ + +Y + + P+ES + L++ LNAEI GT+ +
Sbjct: 1687 MGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITS 1746
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
++A ++I +TY + R++ NP Y L +V ++ + ++ LI + L+ + ++ G
Sbjct: 1747 KQDALDYITWTYFFRRLIMNPSYYNLG-DVSHDSVNKFLSHLIEKSLIELELSYCIEIG 1804
Score = 211 (79.3 bits), Expect = 2.5e-239, Sum P(4) = 2.5e-239
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 190 QSEKIKMELAKLLDRV-PIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ E+I+ EL LL + +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1027 REEEIE-ELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 1085
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K
Sbjct: 1086 AARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEEKK 1145
Query: 304 FFLGK 308
+ K
Sbjct: 1146 LTVDK 1150
Score = 172 (65.6 bits), Expect = 2.5e-239, Sum P(4) = 2.5e-239
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 1151 EDTTLQVVLER-DLG---GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQ 1206
++ LQV L+R G G+ E V + R+PK+K+EGW+L++ + +L+A+KRV
Sbjct: 2078 QEYVLQVSLQRVHFGFHKGKPESCAV-TPRFPKSKDEGWFLILGEVDKRELIALKRVGYI 2136
Query: 1207 RKSR-AKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEA 1251
R A L F P G+ YTL FM D Y+G DQ+Y ++V +A
Sbjct: 2137 RNHHVASLSFYTPEIPGRYIYTLYFMSDCYLGLDQQYDIYLNVTQA 2182
Score = 81 (33.6 bits), Expect = 1.9e-63, Sum P(4) = 1.9e-63
Identities = 29/115 (25%), Positives = 48/115 (41%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGR 246
+ + ELAK L P S + P K ++LLQ ++S+ L +D A R
Sbjct: 1865 DHMNSELAKCLPIESNP--HSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALR 1922
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 301
+ +A+ ++ +GW L +MV + W + L I N L +K
Sbjct: 1923 VCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKK 1977
Score = 52 (23.4 bits), Expect = 3.1e-65, Sum P(3) = 3.1e-65
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 1183 EGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKLDFAAPV-EGGKKTYTLDFMCDSY 1235
E WW+ V+D + + LA+K+ + ++++ L F P+ E Y + + D +
Sbjct: 1218 EPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQL-LVFTIPIFEPLPSQYYIRAVSDRW 1276
Query: 1236 MGCD 1239
+G +
Sbjct: 1277 LGAE 1280
Score = 42 (19.8 bits), Expect = 5.2e-77, Sum P(4) = 5.2e-77
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 317 VELTITPDFQWDDKVHGYVEL-FWVIVED--NDGDYI-LH--HEYFL 357
+ + I+ WDD V G+ EL + D +D +I LH EY L
Sbjct: 2036 INVGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWIKLHADQEYVL 2082
Score = 38 (18.4 bits), Expect = 1.2e-166, Sum P(4) = 1.2e-166
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 292 PNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWD 328
P I++K D L K +LR ++ +T +WD
Sbjct: 556 PLGIIVKELTGDMQLSKS---EILRTQMLVTTPEKWD 589
Score = 37 (18.1 bits), Expect = 7.2e-185, Sum P(4) = 7.2e-185
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 158 TLGERITDLIHTAANVLDRNN 178
++ E + D++H A ++ +N
Sbjct: 65 SINEDLKDILHAAKQIVGTDN 85
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 1432 (509.1 bits), Expect = 7.1e-236, Sum P(4) = 7.1e-236
Identities = 330/799 (41%), Positives = 466/799 (58%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TE 364
+PITRTVLRV L I PDF W+D+VHG V E +W+ VED D+I H EYFL LKKQ +
Sbjct: 1190 QPITRTVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINK 1249
Query: 365 EDHSLNFTVPIYEPLPPQHLI--LPEKF--PPPTELLDLQLLPVTALQNPSYEALYQNYK 420
E L FT+PI+EPLP Q+ I + +++ +++ Q L + P E L
Sbjct: 1250 EAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPL 1309
Query: 421 LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARL-PAKQRITAALPNIIL-VLQLAPTGS 478
+ + + LYN F+ P + +I L + VL APTGS
Sbjct: 1310 PITALGCKAYEALYN---------------FSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 479 GKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVE 538
GKT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 1355 GKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGD 1411
Query: 539 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 598
D+K + K +I++TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIV
Sbjct: 1412 VTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIV 1471
Query: 599 ARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVD 658
+R +I+S E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG
Sbjct: 1472 SRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFP 1531
Query: 659 ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718
++ RM +M KP + AI H+ KP L+FV SR+ RLTA++L+ + + D K +
Sbjct: 1532 GQHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQ-W 1589
Query: 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
L +E++ + +++ L+ TL G+G H GL++ D++ V LF K++V + +S+
Sbjct: 1590 LNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATST 1649
Query: 779 MCWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
+ W V AHL T R + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1650 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDI 1709
Query: 827 HKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPN 883
K++YKKFLYE FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+
Sbjct: 1710 KKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPS 1769
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKT 942
YY+L VS ++ LS L+ ++ +LE + I + ED+ + P G IASYYY+ +KT
Sbjct: 1770 YYSLGDVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIASYYYLKHKT 1829
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-P 1001
++ F L + + LL +L+ A EY LP+R E+ L NP D P
Sbjct: 1830 VKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIEL-NPHSFDSP 1888
Query: 1002 HVKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVS 1060
H KA+ LLQAH S + + D + VL A R+ QAM+DV +S GWL L +
Sbjct: 1889 HTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTVLNITHLI 1948
Query: 1061 QMVTQGMWEHDSMLLQLPH 1079
QMV QG W DS LL +P+
Sbjct: 1949 QMVIQGRWLKDSSLLTIPN 1967
Score = 635 (228.6 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 228/863 (26%), Positives = 403/863 (46%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ K N IQ+ VF YNT +N+L+ A P A NI ++
Sbjct: 472 FKGMKRLNRIQSIVFETAYNTNENMLICA----------PTG----AGKTNIAML----- 512
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535
TI E HQ + + VY+AP++ALA + + ++ + LG+ V EL
Sbjct: 513 -----TILHEIR-QHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGIVVKEL 565
Query: 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVL 594
T + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVL
Sbjct: 566 TGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVL 625
Query: 595 EVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEI 652
E IVAR +R + S ++ IRI+ LS +L N D+ ++ + + G+F F RPVPL
Sbjct: 626 ESIVARTLRQVES-TQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQ 684
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
G+ TN ++ M + Y ++++ K +VFV +R TA+ L I K+S
Sbjct: 685 TFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNS 743
Query: 713 DQKSAFLLCSAKEVEPHVSIIQE---EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK 769
Q S FL E + +Q+ + +R G H G+ + D+ +V LF G
Sbjct: 744 GQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGH 803
Query: 770 IKVCVMSSSMCWEVPLTAHLAT--GRKM----------LILTTLLQMMGHAGRPLLDNSE 817
IKV V ++++ W V L AH G ++ L + ++Q+ G AGRP D
Sbjct: 804 IKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 863
Query: 818 KCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF- 876
+ +I+ +Y L + P+ES L DN NAEI G + N ++AV ++++T+
Sbjct: 864 EGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYL 923
Query: 877 --RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMDLCPS- 927
R+ NP Y G+SH+ L H +L+ L+ + I E+ S
Sbjct: 924 YVRMRANPLAY---GISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSST 980
Query: 928 NYGMIASYYYISYKTIECFSSSLTSKTKMKG-LLEVLASASEYAQLPIRPGEEELVRRLI 986
+ G AS++YI Y TIE F+ L K +G + +++ A E+ Q+ +R E E + L+
Sbjct: 981 DLGRTASHFYIKYNTIETFNE-LFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALL 1039
Query: 987 NHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVIS 1045
N+ A + + K N LLQ + S M+ +L D V +A+R+++A+ ++
Sbjct: 1040 NNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIAL 1099
Query: 1046 SNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXX 1105
W ++ + +S+++ + +W S L Q + R +E +++ TV
Sbjct: 1100 RKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEE---KNL-TV------ 1149
Query: 1106 XXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGG 1165
++ D++ +I + NI + K Q + + + ++Q + L
Sbjct: 1150 --------DKLKDMRKDEIGHILHHV-NIGLKVK-QCVHQIPSVTMEASIQPITRTVLRV 1199
Query: 1166 RTELGPVYS--NRYPKAKEEGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKLDFAA 1217
+ P +S ++ E WW+ V+D + + LA+K+ + ++++ L F
Sbjct: 1200 SLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQL-LVFTI 1258
Query: 1218 PV-EGGKKTYTLDFMCDSYMGCD 1239
P+ E Y + + D ++G +
Sbjct: 1259 PIFEPLPSQYYIRAVSDRWLGAE 1281
Score = 556 (200.8 bits), Expect = 7.1e-236, Sum P(4) = 7.1e-236
Identities = 105/193 (54%), Positives = 140/193 (72%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH V+IKGTQ+Y ++G++ +L LD
Sbjct: 787 MLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILD 846
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 847 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALG 906
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA W+ YTYLY RM NP+ YG+S + +D TL + L+ LD+
Sbjct: 907 TVTNVEEAVRWMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAK 966
Query: 179 LVKYGRKSGYFQS 191
++++ ++GYF S
Sbjct: 967 MIRFEERTGYFSS 979
Score = 347 (127.2 bits), Expect = 9.5e-39, Sum P(4) = 9.5e-39
Identities = 66/179 (36%), Positives = 114/179 (63%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR+ VE+LF + VQVL++T+ LAWGVN PAH VIIKGT+ Y+ + + + D++QM
Sbjct: 1628 DRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQM 1687
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ+D G+ +I+ + +Y + + P+ES + L++ LNAEI GT+ +
Sbjct: 1688 MGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITS 1747
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
++A ++I +TY + R++ NP Y L +V ++ + ++ LI + L+ ++ ++ G
Sbjct: 1748 KQDAMDYITWTYFFRRLIMNPSYYSLG-DVSQDSINKFLSHLIGQSLVELELSHCIEVG 1805
Score = 215 (80.7 bits), Expect = 7.1e-236, Sum P(4) = 7.1e-236
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 190 QSEKIKMELAKLLDRV-PIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ E+I+ EL LL+ + +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1028 REEEIE-ELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 1086
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K+
Sbjct: 1087 AARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKN 1146
Query: 304 FFLGK 308
+ K
Sbjct: 1147 LTVDK 1151
Score = 158 (60.7 bits), Expect = 7.1e-236, Sum P(4) = 7.1e-236
Identities = 38/106 (35%), Positives = 60/106 (56%)
Query: 1151 EDTTLQVVLER-DLG---GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQ 1206
++ LQV L+R G G+ E V + R+PK K+EGW+L++ + +L+A+KRV
Sbjct: 2079 QEYVLQVSLQRVHFGLPKGKHENHAV-TPRFPKLKDEGWFLILGEVDKRELMAVKRVGFV 2137
Query: 1207 RKSR-AKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEA 1251
R A + F P G+ +TL M D Y+G DQ+Y ++V +A
Sbjct: 2138 RTHHDASISFFTPETPGRYIFTLYLMSDCYLGLDQQYDIYLNVIKA 2183
Score = 76 (31.8 bits), Expect = 1.7e-61, Sum P(4) = 1.7e-61
Identities = 29/103 (28%), Positives = 46/103 (44%)
Query: 197 ELAKLLDRVPIPVK-ESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRA 250
ELAK L PI + S + P K ++LLQ ++S+ L +D A R+ +A
Sbjct: 1871 ELAKCL---PIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQA 1927
Query: 251 LFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPN 293
+ ++ +GW L +MV + W + L IPN
Sbjct: 1928 MLDVAASQGWLVTVLNITHLIQMVIQGRWLKDSSLLT---IPN 1967
Score = 40 (19.1 bits), Expect = 5.6e-76, Sum P(4) = 5.6e-76
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 317 VELTITPDFQWDDKVHGYVEL 337
+ + I+ WDD V G+ EL
Sbjct: 2037 INVGISVKGSWDDLVEGHNEL 2057
Score = 38 (18.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 851 DNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDL 910
D+F+ + G + K ++DY + Q P L+ V + S E+ + + L
Sbjct: 177 DHFDELPINGESQ-KTISLDYKKFLNEQFQEPYTPELKPVEKTNGSLLWCEVEKYLNATL 235
Query: 911 -EATRSIIMEDDMDLCPSNYGMIAS 934
E T + +ED LC + Y M+AS
Sbjct: 236 KEMTEAARVED---LCCTLYDMLAS 257
Score = 37 (18.1 bits), Expect = 1.1e-160, Sum P(3) = 1.1e-160
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 292 PNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWD 328
P I++K D L K +LR ++ +T +WD
Sbjct: 557 PLGIVVKELTGDMQLSKS---EILRTQMLVTTPEKWD 590
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 1395 (496.1 bits), Expect = 3.0e-231, Sum P(4) = 3.0e-231
Identities = 324/799 (40%), Positives = 462/799 (57%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TE 364
+PITRTVLRV L I PDF W+D+VHG V E +W+ VED D+I H EYFL LKKQ +
Sbjct: 1190 QPITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINK 1249
Query: 365 EDHSLNFTVPIYEPLPPQHLI--LPEKF--PPPTELLDLQLLPVTALQNPSYEALYQNYK 420
E L FT+PI+EPLP Q+ I + +++ +++ Q L + P E L
Sbjct: 1250 EAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPL 1309
Query: 421 LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARL-PAKQRITAALPNIIL-VLQLAPTGS 478
+ + + LYN F+ P + +I L + VL APTGS
Sbjct: 1310 PVTALGCKAYEALYN---------------FSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 479 GKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVE 538
GKT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 1355 GKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGD 1411
Query: 539 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 598
D+K + K +I++TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIV
Sbjct: 1412 VTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIV 1471
Query: 599 ARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVD 658
+R +I+S E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG
Sbjct: 1472 SRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFP 1531
Query: 659 ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718
++ RM +M KP + H ++P L+ +P R + +T ++L+ + + D K +
Sbjct: 1532 GQHYCPRMASMNKPAFQESHTHCP-DRPCLL-LPERMLSSMTKLELIAFLATEEDPKQ-W 1588
Query: 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
L +E+E ++ +++ L+ TL G+G H GL++ D++ V LF K++V + +S+
Sbjct: 1589 LNMDEQEMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATST 1648
Query: 779 MCWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
+ W V AHL T R + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1649 LAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDI 1708
Query: 827 HKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPN 883
K++YKKFLYE FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+
Sbjct: 1709 KKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPS 1768
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKT 942
YYNL VS ++ LS L+ ++ +LE + I + ED+ + P G IASYYY+ +KT
Sbjct: 1769 YYNLGDVSQDAINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKT 1828
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-P 1001
++ F L + + LL +L+ A EY LP+R E+ L NP D P
Sbjct: 1829 VKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIEL-NPHSFDSP 1887
Query: 1002 HVKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVS 1060
H KA+ LLQAH S + + D + VL A R+ QAM+DV +S GWL L +
Sbjct: 1888 HTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLI 1947
Query: 1061 QMVTQGMWEHDSMLLQLPH 1079
QMV QG W DS LL +P+
Sbjct: 1948 QMVIQGRWLKDSSLLTIPN 1966
Score = 637 (229.3 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 229/863 (26%), Positives = 403/863 (46%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ K N IQ+ VF YNT +N+L+ A P A NI ++ L
Sbjct: 472 FKGMKRLNRIQSIVFDTAYNTNENMLICA----------PTG----AGKTNIAMLTVL-- 515
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535
I F HQ + + VY+AP++ALA + + ++ + LG+ V EL
Sbjct: 516 ----HEIRQHF-----HQGVLKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGIVVKEL 565
Query: 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVL 594
T + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVL
Sbjct: 566 TGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVL 625
Query: 595 EVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEI 652
E IVAR +R + S ++ IRI+ LS +L N D+ ++ + + G+F F RPVPL
Sbjct: 626 ESIVARTLRQVES-TQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQ 684
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
G+ N ++ M + Y ++++ K +VFV +R TA+ L I K+S
Sbjct: 685 TFLGIKSANKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNS 743
Query: 713 DQKSAFLLCSAKEVEPHVSIIQE---EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK 769
Q S FL E + +Q+ + +R G H G+ + D+ +V LF G
Sbjct: 744 GQISCFLPTQGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGH 803
Query: 770 IKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMMGHAGRPLLDNSE 817
IKV V ++++ W V L AH + G ++ L + ++Q+ G AGRP D
Sbjct: 804 IKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 863
Query: 818 KCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF- 876
+ +I+ +Y L + P+ES L DN NAEI G + N ++AV ++++T+
Sbjct: 864 EGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYL 923
Query: 877 --RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMDLCPS- 927
R+ NP Y G+SH+ L H +L+ L+ R I E+ S
Sbjct: 924 YVRMRANPLAY---GISHKAYQMDPTLRKHREQLLIEVGQKLDKARMIRFEERTGYFSST 980
Query: 928 NYGMIASYYYISYKTIECFSSSLTSKTKMKG-LLEVLASASEYAQLPIRPGEEELVRRLI 986
+ G AS+YYI Y TIE F+ L K +G + +++ A E+ Q+ +R E E + L+
Sbjct: 981 DLGRTASHYYIKYNTIETFNE-LFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALL 1039
Query: 987 NHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVIS 1045
N+ A + + K N LLQ + S M+ +L D V +A+R+++A+ ++
Sbjct: 1040 NNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIAL 1099
Query: 1046 SNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXX 1105
W ++ + +S+++ + +W S L Q + R +E +++ TV
Sbjct: 1100 RKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEE---KNL-TV------ 1149
Query: 1106 XXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGG 1165
++ D++ +I + NI + K Q + + + ++Q + L
Sbjct: 1150 --------DKLKDMRKDEIGHILHHV-NIGLKVK-QCVHQIPSVTMEASIQPITRTVLRV 1199
Query: 1166 RTELGPVYS--NRYPKAKEEGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKLDFAA 1217
+ P +S ++ E WW+ V+D + + LA+K+ + ++++ L F
Sbjct: 1200 SLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQL-LVFTI 1258
Query: 1218 PV-EGGKKTYTLDFMCDSYMGCD 1239
P+ E Y + + D ++G +
Sbjct: 1259 PIFEPLPSQYYIRAVSDRWLGAE 1281
Score = 557 (201.1 bits), Expect = 3.0e-231, Sum P(4) = 3.0e-231
Identities = 106/193 (54%), Positives = 140/193 (72%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH VIIKGTQ+Y ++G++ +L LD
Sbjct: 787 MLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILD 846
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 847 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALG 906
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA W+ YTYLY RM NP+ YG+S + +D TL + L+ LD+
Sbjct: 907 TVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKHREQLLIEVGQKLDKAR 966
Query: 179 LVKYGRKSGYFQS 191
++++ ++GYF S
Sbjct: 967 MIRFEERTGYFSS 979
Score = 346 (126.9 bits), Expect = 2.5e-38, Sum P(4) = 2.5e-38
Identities = 66/179 (36%), Positives = 113/179 (63%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR+ VE+LF + VQVL++T+ LAWGVN PAH VIIKGT+ Y+ + + + D++QM
Sbjct: 1627 DRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQM 1686
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ+D G+ +I+ + +Y + + P+ES + L++ LNAEI GT+ +
Sbjct: 1687 MGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITS 1746
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
++A ++I +TY + R++ NP Y L +V + + ++ LI + L+ ++ ++ G
Sbjct: 1747 KQDALDYITWTYFFRRLIMNPSYYNLG-DVSQDAINKFLSHLIGQSLVELELSHCIEVG 1804
Score = 215 (80.7 bits), Expect = 3.0e-231, Sum P(4) = 3.0e-231
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 190 QSEKIKMELAKLLDRV-PIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ E+I+ EL LL+ + +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1028 REEEIE-ELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 1086
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K+
Sbjct: 1087 AARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKN 1146
Query: 304 FFLGK 308
+ K
Sbjct: 1147 LTVDK 1151
Score = 153 (58.9 bits), Expect = 3.0e-231, Sum P(4) = 3.0e-231
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 1176 RYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSR-AKLDFAAPVEGGKKTYTLDFMCDS 1234
R+PK K+EGW+L++ + +L+A+KRV R A + F P G+ +TL M D
Sbjct: 2106 RFPKLKDEGWFLILGEVDKRELVAVKRVGFVRTHHEASISFFTPEAPGRYIFTLYLMSDC 2165
Query: 1235 YMGCDQEYSFTVDVKEA 1251
Y+G DQ+Y ++V +A
Sbjct: 2166 YLGLDQQYDIFLNVTKA 2182
Score = 76 (31.8 bits), Expect = 2.7e-61, Sum P(4) = 2.7e-61
Identities = 29/103 (28%), Positives = 46/103 (44%)
Query: 197 ELAKLLDRVPIPVK-ESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRA 250
ELAK L PI + S + P K ++LLQ ++S+ L +D A R+ +A
Sbjct: 1870 ELAKCL---PIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQA 1926
Query: 251 LFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPN 293
+ ++ +GW L +MV + W + L IPN
Sbjct: 1927 MLDVAASQGWLVTTLNITHLIQMVIQGRWLKDSSLLT---IPN 1966
Score = 42 (19.8 bits), Expect = 8.8e-76, Sum P(4) = 8.8e-76
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 317 VELTITPDFQWDDKVHGYVEL 337
+ + I+ WDD V G+ EL
Sbjct: 2036 INVGISVKGSWDDSVEGHNEL 2056
Score = 38 (18.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 851 DNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDL 910
D+F+ V G + K ++DY + Q P L+ V + S E+ + + L
Sbjct: 177 DHFDELPVNGEAQ-KTISLDYKKFLNEQFQEPYTPELKPVEKSNGSLLWCEVEKYLNATL 235
Query: 911 -EATRSIIMEDDMDLCPSNYGMIAS 934
E T + +ED LC + Y M+AS
Sbjct: 236 KEMTEAPRVED---LCCTLYDMLAS 257
Score = 37 (18.1 bits), Expect = 5.1e-156, Sum P(3) = 5.1e-156
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 292 PNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWD 328
P I++K D L K +LR ++ +T +WD
Sbjct: 557 PLGIVVKELTGDMQLSKS---EILRTQMLVTTPEKWD 590
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 1240 (441.6 bits), Expect = 1.6e-228, Sum P(4) = 1.6e-228
Identities = 261/585 (44%), Positives = 365/585 (62%)
Query: 685 KPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV-EPHVSIIQEEMLRATLR 743
KPALVFVP R+ R AV L+ + D K L + + ++ I++E LR ++
Sbjct: 1554 KPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVS 1613
Query: 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT--------GRKM 795
GVG+LHEG D +V LFE+ I+VCV+ MC+++ ++A+L G+
Sbjct: 1614 CGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYH 1673
Query: 796 LI----LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
+ + +L M+G A RP+LD+ KCV++C + YYKKFL + PVESHL H LHD
Sbjct: 1674 VYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHD 1733
Query: 852 NFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTIS 908
+FNAEIV IENKQDA+DYLTWT R+TQNPNYYNLQG +HRHLSD LSELVE T+
Sbjct: 1734 HFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLK 1793
Query: 909 DLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
DLE ++ I ++D+MD N GMIASYYYISY+TIE FS SL KTK + L+E+++++SE
Sbjct: 1794 DLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIEIISASSE 1853
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEK 1028
+ +P+R E+ ++R+L N K TDPHVK N L+ AH S + L D E
Sbjct: 1854 FGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTAELNKDTEL 1913
Query: 1029 VLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRC 1088
++L A RL+QA VDV+SSNGWLS A+ AME+SQM+TQ M+ ++ L QLPH + L +R
Sbjct: 1914 IVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERA 1973
Query: 1089 QENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRA 1148
+ + + +VF QM +L D+ARFCN +P+I+++ ++++ +V
Sbjct: 1974 K---AKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELEN--DVVT 2028
Query: 1149 GGEDTTLQVVLERDLGGRTELGPVYSNRYP-KAKEEGWWLVVDDAKTNQLLAIKRVSLQR 1207
++ L V LERD PV + +P K KEEGWWLV+ D+++N LL IKR+ +
Sbjct: 2029 SNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINE 2088
Query: 1208 KSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAG 1252
KS +LDFAAP G K + L F+ DSY+G DQE+ V+E G
Sbjct: 2089 KSSVQLDFAAPRPGHHK-FKLFFISDSYLGADQEFDVAFKVEEPG 2132
Score = 1218 (433.8 bits), Expect = 1.3e-224, Sum P(3) = 1.3e-224
Identities = 252/583 (43%), Positives = 365/583 (62%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITRT +R+ELTITPDF+WD+KVHG E FW+ +ED DG+ ILHHE+FLLK+++ ++H
Sbjct: 1184 QPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEFFLLKQKFCSDEH 1243
Query: 368 SLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQT 427
+ VP+++P+PP + + + + +LP++ E +L + +Q
Sbjct: 1244 VVKMIVPMFDPMPPLYYV---RIVSDRWIGAETVLPISFRHLILPEKYPPPTELLD-LQP 1299
Query: 428 QVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFA 487
+ + N E + A K+ F + + T N +++ AP GSGKT AE A
Sbjct: 1300 LPISAVTNKEFQTVFAESGFKV-FNPIQTQVFRTVFESNENVIV-CAPNGSGKTAIAELA 1357
Query: 488 ILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLE 547
+LR+ + E +AVYI P+E +A + Y DW+R+ +G +V LT E MDLKL +
Sbjct: 1358 VLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQ 1414
Query: 548 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQ 607
+GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG G V EV+ +R RYI+SQ
Sbjct: 1415 RGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRTRYISSQ 1474
Query: 608 VENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMK 667
+E+ +R+VALS+SL NA+DLG W+G S+ FNF P RPVPL+++I+ ++++ +R
Sbjct: 1475 LESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNASRFA 1534
Query: 668 AMTKPTYTAIMQHA-KNE-KPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725
AM +P Y AI +HA K E KPALVFVP R+ R AV L+ + D K L +
Sbjct: 1535 AMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDD 1594
Query: 726 V-EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
+ ++ I++E LR ++ GVG+LHEG D +V LFE+ I+VCV+ MC+++
Sbjct: 1595 TFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIE 1654
Query: 785 LTAHLAT--------GRKMLI----LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832
++A+L G+ + + +L M+G A RP+LD+ KCV++C + YYK
Sbjct: 1655 MSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYK 1714
Query: 833 KFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWT 875
KFL + PVESHL H LHD+FNAEIV IENKQDA+DYLTWT
Sbjct: 1715 KFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWT 1757
Score = 694 (249.4 bits), Expect = 1.6e-228, Sum P(4) = 1.6e-228
Identities = 132/196 (67%), Positives = 156/196 (79%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVL STA LAWGVNLPAHTVIIKGTQ+YNPEKG WTEL LD
Sbjct: 782 MNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALD 841
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
IMQMLGRAGRPQYD GEGI+IT HSELQYYLSLMNQQLP+ESQ VS+L ++LNAE+VLG
Sbjct: 842 IMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLG 901
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TV + EA NW+ YT+L+ RML+NP LYG++ E D L +R DLIHTA +LD+
Sbjct: 902 TVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAG 961
Query: 179 LVKYGRKSGYFQSEKI 194
L+KY ++SG Q+ ++
Sbjct: 962 LIKYDKRSGIIQATEL 977
Score = 523 (189.2 bits), Expect = 5.4e-43, Sum P(3) = 5.4e-43
Identities = 148/475 (31%), Positives = 238/475 (50%)
Query: 470 VLQLAPTGSGKTICAEFAILR---NHQRASETGV----MRAVYIAPIEALAKQRYCDWER 522
+L APTG+GKT A +L+ NH A + V + VYIAP+++L ++ + +
Sbjct: 493 LLLCAPTGAGKTNVALLTMLQEIGNHL-AEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSK 551
Query: 523 KFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 582
+ G+ V E+T + M + Q+I+ TPEK+D ++R+ +R Y Q V L IIDE
Sbjct: 552 RLAP-FGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDE 610
Query: 583 LHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFP 642
+HL+ GPVLE IV R Q ++ R+V LS +L N +D+ ++ + F
Sbjct: 611 IHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEHLHFFD 670
Query: 643 PGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAV 702
RPVPLE Q GV R +AM + Y IM+HA + LVFV SRK TA
Sbjct: 671 NSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHA-GKSQVLVFVHSRKETAKTAK 729
Query: 703 DLMIYSCKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQE 759
+ +C + D SAF+ S + + + L+ L G H G+N+ D+
Sbjct: 730 AIRD-ACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRT 788
Query: 760 VVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMMGH 807
+V LF I+V ++++ W V L AH + G ++ L ++QM+G
Sbjct: 789 LVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGR 848
Query: 808 AGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQD 867
AGRP D+ + +++ + +YY + + PVES + L D NAE+V G + + +
Sbjct: 849 AGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSE 908
Query: 868 AVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIME 919
A ++L +TF R+ +NP Y G++H L+E +DL T ++++
Sbjct: 909 ATNWLGYTFLFVRMLKNPTLY---GITHEQA--RADPLLEQRRADLIHTACVLLD 958
Score = 329 (120.9 bits), Expect = 1.6e-228, Sum P(4) = 1.6e-228
Identities = 67/115 (58%), Positives = 85/115 (73%)
Query: 195 KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSR 249
K+EL K+ + PIP+KE+L+E SAK NVLLQ YISQLKLEG +L +DM SAGRL R
Sbjct: 1027 KLELQKMAEHAPIPIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFR 1086
Query: 250 ALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
ALFEIVL RGW+ LA+K L L KMVT+R W PL QF IP+E++ ++KK++
Sbjct: 1087 ALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNY 1141
Score = 312 (114.9 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 87/354 (24%), Positives = 165/354 (46%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
++QM+G AGRP D+ + +++ + +YY + + PVES + L D NAE+V G
Sbjct: 842 IMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLG 901
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
+ + +A ++L +TF R+ +NP Y G++H L+E +DL T ++
Sbjct: 902 TVSSVSEATNWLGYTFLFVRMLKNPTLY---GITHEQA--RADPLLEQRRADLIHTACVL 956
Query: 918 ME-------DDMD--LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
++ D + + G IAS++Y +Y++++ ++ L L + + +SE
Sbjct: 957 LDKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSE 1016
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQE 1027
+ L +R E+ ++++ H + K N LLQA+ S +EG L+ D
Sbjct: 1017 FKLLSVRDEEKLELQKMAEHAPIPIKE-NLDEASAKTNVLLQAYISQLKLEGFALQADMV 1075
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087
V SA RL +A+ +++ GW LA + + +MVTQ W + L Q ++ R
Sbjct: 1076 FVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVV-R 1134
Query: 1088 CQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQ 1141
+ S + ++ +M + +F +FP ++M+ +Q
Sbjct: 1135 SIDKKNYSFDRLYDLDQHQLGDLIKMPKMGK----PLFKFIRQFPKLEMTTLIQ 1184
Score = 220 (82.5 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 49/176 (27%), Positives = 90/176 (51%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
D +V+ LF +QV V + + + + A+ V++ TQ YN + + + D++ M
Sbjct: 1627 DVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHM 1686
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+G A RP DS + +++ S+ YY + LP+ES L + NAEIV T++N
Sbjct: 1687 VGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIEN 1746
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +++ +T LY RM +NP Y L L + +++L+ L+ + +
Sbjct: 1747 KQDAIDYLTWTLLYRRMTQNPNYYNLQGTT-HRHLSDALSELVELTLKDLENSKCI 1801
Score = 121 (47.7 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 32/112 (28%), Positives = 62/112 (55%)
Query: 198 LAKLLDRVPIPVK-ESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MSAGRLSRAL 251
L +L +R+P +K + +P K+N+L+ ++S++KL L D + A RL +A
Sbjct: 1867 LRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTA-ELNKDTELIVLRACRLVQAC 1925
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
+++ GW A A++LS+M+T+ M+S + L+Q +L + + K+
Sbjct: 1926 VDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKE 1977
Score = 53 (23.7 bits), Expect = 4.9e-64, Sum P(2) = 4.9e-64
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 191 SEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTY-ISQLKLEGLSLTSDMSAGRLSR 249
SE +++ L L + I VK+ ++ S + ++ Y IS +E S++ + +R
Sbjct: 1785 SELVELTLKDLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTIELFSMS--LKEKTKTR 1842
Query: 250 ALFEIV 255
AL EI+
Sbjct: 1843 ALIEII 1848
Score = 42 (19.8 bits), Expect = 1.5e-127, Sum P(3) = 1.5e-127
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 387 PEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
P F +L+ + LP A P+++ YK N IQ+++ +++++L+ A
Sbjct: 446 PRPFAEGEKLVSVSELPKWA--QPAFDG----YKSLNRIQSRLCDSALRSKEHLLLCA 497
Score = 40 (19.1 bits), Expect = 6.4e-91, Sum P(4) = 6.4e-91
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 984 RLINHQRFSFANPKCTDPHV 1003
++++H+ F C+D HV
Sbjct: 1225 KILHHEFFLLKQKFCSDEHV 1244
Score = 40 (19.1 bits), Expect = 6.4e-91, Sum P(4) = 6.4e-91
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 1183 EGWWLVVDDAKTNQLLAIKRVSLQRK 1208
EG+W+ ++D ++L + L++K
Sbjct: 1212 EGFWIFIEDTDGEKILHHEFFLLKQK 1237
Score = 38 (18.4 bits), Expect = 1.6e-228, Sum P(4) = 1.6e-228
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 665 RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARL 699
+M M KP + I Q K E L+ +R R+
Sbjct: 1159 KMPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRI 1193
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 1240 (441.6 bits), Expect = 1.6e-228, Sum P(4) = 1.6e-228
Identities = 261/585 (44%), Positives = 365/585 (62%)
Query: 685 KPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV-EPHVSIIQEEMLRATLR 743
KPALVFVP R+ R AV L+ + D K L + + ++ I++E LR ++
Sbjct: 1554 KPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVS 1613
Query: 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT--------GRKM 795
GVG+LHEG D +V LFE+ I+VCV+ MC+++ ++A+L G+
Sbjct: 1614 CGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYH 1673
Query: 796 LI----LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
+ + +L M+G A RP+LD+ KCV++C + YYKKFL + PVESHL H LHD
Sbjct: 1674 VYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHD 1733
Query: 852 NFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTIS 908
+FNAEIV IENKQDA+DYLTWT R+TQNPNYYNLQG +HRHLSD LSELVE T+
Sbjct: 1734 HFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLK 1793
Query: 909 DLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
DLE ++ I ++D+MD N GMIASYYYISY+TIE FS SL KTK + L+E+++++SE
Sbjct: 1794 DLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIEIISASSE 1853
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEK 1028
+ +P+R E+ ++R+L N K TDPHVK N L+ AH S + L D E
Sbjct: 1854 FGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTAELNKDTEL 1913
Query: 1029 VLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRC 1088
++L A RL+QA VDV+SSNGWLS A+ AME+SQM+TQ M+ ++ L QLPH + L +R
Sbjct: 1914 IVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERA 1973
Query: 1089 QENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRA 1148
+ + + +VF QM +L D+ARFCN +P+I+++ ++++ +V
Sbjct: 1974 K---AKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELEN--DVVT 2028
Query: 1149 GGEDTTLQVVLERDLGGRTELGPVYSNRYP-KAKEEGWWLVVDDAKTNQLLAIKRVSLQR 1207
++ L V LERD PV + +P K KEEGWWLV+ D+++N LL IKR+ +
Sbjct: 2029 SNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINE 2088
Query: 1208 KSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAG 1252
KS +LDFAAP G K + L F+ DSY+G DQE+ V+E G
Sbjct: 2089 KSSVQLDFAAPRPGHHK-FKLFFISDSYLGADQEFDVAFKVEEPG 2132
Score = 1218 (433.8 bits), Expect = 1.3e-224, Sum P(3) = 1.3e-224
Identities = 252/583 (43%), Positives = 365/583 (62%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITRT +R+ELTITPDF+WD+KVHG E FW+ +ED DG+ ILHHE+FLLK+++ ++H
Sbjct: 1184 QPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEFFLLKQKFCSDEH 1243
Query: 368 SLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQT 427
+ VP+++P+PP + + + + +LP++ E +L + +Q
Sbjct: 1244 VVKMIVPMFDPMPPLYYV---RIVSDRWIGAETVLPISFRHLILPEKYPPPTELLD-LQP 1299
Query: 428 QVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFA 487
+ + N E + A K+ F + + T N +++ AP GSGKT AE A
Sbjct: 1300 LPISAVTNKEFQTVFAESGFKV-FNPIQTQVFRTVFESNENVIV-CAPNGSGKTAIAELA 1357
Query: 488 ILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLE 547
+LR+ + E +AVYI P+E +A + Y DW+R+ +G +V LT E MDLKL +
Sbjct: 1358 VLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQ 1414
Query: 548 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQ 607
+GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG G V EV+ +R RYI+SQ
Sbjct: 1415 RGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRTRYISSQ 1474
Query: 608 VENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMK 667
+E+ +R+VALS+SL NA+DLG W+G S+ FNF P RPVPL+++I+ ++++ +R
Sbjct: 1475 LESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNASRFA 1534
Query: 668 AMTKPTYTAIMQHA-KNE-KPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725
AM +P Y AI +HA K E KPALVFVP R+ R AV L+ + D K L +
Sbjct: 1535 AMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDD 1594
Query: 726 V-EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
+ ++ I++E LR ++ GVG+LHEG D +V LFE+ I+VCV+ MC+++
Sbjct: 1595 TFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIE 1654
Query: 785 LTAHLAT--------GRKMLI----LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832
++A+L G+ + + +L M+G A RP+LD+ KCV++C + YYK
Sbjct: 1655 MSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYK 1714
Query: 833 KFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWT 875
KFL + PVESHL H LHD+FNAEIV IENKQDA+DYLTWT
Sbjct: 1715 KFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWT 1757
Score = 694 (249.4 bits), Expect = 1.6e-228, Sum P(4) = 1.6e-228
Identities = 132/196 (67%), Positives = 156/196 (79%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVL STA LAWGVNLPAHTVIIKGTQ+YNPEKG WTEL LD
Sbjct: 782 MNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALD 841
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
IMQMLGRAGRPQYD GEGI+IT HSELQYYLSLMNQQLP+ESQ VS+L ++LNAE+VLG
Sbjct: 842 IMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLG 901
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TV + EA NW+ YT+L+ RML+NP LYG++ E D L +R DLIHTA +LD+
Sbjct: 902 TVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAG 961
Query: 179 LVKYGRKSGYFQSEKI 194
L+KY ++SG Q+ ++
Sbjct: 962 LIKYDKRSGIIQATEL 977
Score = 523 (189.2 bits), Expect = 5.4e-43, Sum P(3) = 5.4e-43
Identities = 148/475 (31%), Positives = 238/475 (50%)
Query: 470 VLQLAPTGSGKTICAEFAILR---NHQRASETGV----MRAVYIAPIEALAKQRYCDWER 522
+L APTG+GKT A +L+ NH A + V + VYIAP+++L ++ + +
Sbjct: 493 LLLCAPTGAGKTNVALLTMLQEIGNHL-AEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSK 551
Query: 523 KFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 582
+ G+ V E+T + M + Q+I+ TPEK+D ++R+ +R Y Q V L IIDE
Sbjct: 552 RLAP-FGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDE 610
Query: 583 LHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFP 642
+HL+ GPVLE IV R Q ++ R+V LS +L N +D+ ++ + F
Sbjct: 611 IHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEHLHFFD 670
Query: 643 PGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAV 702
RPVPLE Q GV R +AM + Y IM+HA + LVFV SRK TA
Sbjct: 671 NSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHA-GKSQVLVFVHSRKETAKTAK 729
Query: 703 DLMIYSCKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQE 759
+ +C + D SAF+ S + + + L+ L G H G+N+ D+
Sbjct: 730 AIRD-ACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRT 788
Query: 760 VVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMMGH 807
+V LF I+V ++++ W V L AH + G ++ L ++QM+G
Sbjct: 789 LVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGR 848
Query: 808 AGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQD 867
AGRP D+ + +++ + +YY + + PVES + L D NAE+V G + + +
Sbjct: 849 AGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSE 908
Query: 868 AVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIME 919
A ++L +TF R+ +NP Y G++H L+E +DL T ++++
Sbjct: 909 ATNWLGYTFLFVRMLKNPTLY---GITHEQA--RADPLLEQRRADLIHTACVLLD 958
Score = 329 (120.9 bits), Expect = 1.6e-228, Sum P(4) = 1.6e-228
Identities = 67/115 (58%), Positives = 85/115 (73%)
Query: 195 KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSR 249
K+EL K+ + PIP+KE+L+E SAK NVLLQ YISQLKLEG +L +DM SAGRL R
Sbjct: 1027 KLELQKMAEHAPIPIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFR 1086
Query: 250 ALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
ALFEIVL RGW+ LA+K L L KMVT+R W PL QF IP+E++ ++KK++
Sbjct: 1087 ALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNY 1141
Score = 312 (114.9 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 87/354 (24%), Positives = 165/354 (46%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
++QM+G AGRP D+ + +++ + +YY + + PVES + L D NAE+V G
Sbjct: 842 IMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLG 901
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
+ + +A ++L +TF R+ +NP Y G++H L+E +DL T ++
Sbjct: 902 TVSSVSEATNWLGYTFLFVRMLKNPTLY---GITHEQA--RADPLLEQRRADLIHTACVL 956
Query: 918 ME-------DDMD--LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
++ D + + G IAS++Y +Y++++ ++ L L + + +SE
Sbjct: 957 LDKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSE 1016
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQE 1027
+ L +R E+ ++++ H + K N LLQA+ S +EG L+ D
Sbjct: 1017 FKLLSVRDEEKLELQKMAEHAPIPIKE-NLDEASAKTNVLLQAYISQLKLEGFALQADMV 1075
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087
V SA RL +A+ +++ GW LA + + +MVTQ W + L Q ++ R
Sbjct: 1076 FVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVV-R 1134
Query: 1088 CQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQ 1141
+ S + ++ +M + +F +FP ++M+ +Q
Sbjct: 1135 SIDKKNYSFDRLYDLDQHQLGDLIKMPKMGK----PLFKFIRQFPKLEMTTLIQ 1184
Score = 220 (82.5 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 49/176 (27%), Positives = 90/176 (51%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
D +V+ LF +QV V + + + + A+ V++ TQ YN + + + D++ M
Sbjct: 1627 DVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHM 1686
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+G A RP DS + +++ S+ YY + LP+ES L + NAEIV T++N
Sbjct: 1687 VGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIEN 1746
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +++ +T LY RM +NP Y L L + +++L+ L+ + +
Sbjct: 1747 KQDAIDYLTWTLLYRRMTQNPNYYNLQGTT-HRHLSDALSELVELTLKDLENSKCI 1801
Score = 121 (47.7 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 32/112 (28%), Positives = 62/112 (55%)
Query: 198 LAKLLDRVPIPVK-ESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MSAGRLSRAL 251
L +L +R+P +K + +P K+N+L+ ++S++KL L D + A RL +A
Sbjct: 1867 LRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTA-ELNKDTELIVLRACRLVQAC 1925
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
+++ GW A A++LS+M+T+ M+S + L+Q +L + + K+
Sbjct: 1926 VDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKE 1977
Score = 53 (23.7 bits), Expect = 4.9e-64, Sum P(2) = 4.9e-64
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 191 SEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTY-ISQLKLEGLSLTSDMSAGRLSR 249
SE +++ L L + I VK+ ++ S + ++ Y IS +E S++ + +R
Sbjct: 1785 SELVELTLKDLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTIELFSMS--LKEKTKTR 1842
Query: 250 ALFEIV 255
AL EI+
Sbjct: 1843 ALIEII 1848
Score = 42 (19.8 bits), Expect = 1.5e-127, Sum P(3) = 1.5e-127
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 387 PEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
P F +L+ + LP A P+++ YK N IQ+++ +++++L+ A
Sbjct: 446 PRPFAEGEKLVSVSELPKWA--QPAFDG----YKSLNRIQSRLCDSALRSKEHLLLCA 497
Score = 40 (19.1 bits), Expect = 6.4e-91, Sum P(4) = 6.4e-91
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 984 RLINHQRFSFANPKCTDPHV 1003
++++H+ F C+D HV
Sbjct: 1225 KILHHEFFLLKQKFCSDEHV 1244
Score = 40 (19.1 bits), Expect = 6.4e-91, Sum P(4) = 6.4e-91
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 1183 EGWWLVVDDAKTNQLLAIKRVSLQRK 1208
EG+W+ ++D ++L + L++K
Sbjct: 1212 EGFWIFIEDTDGEKILHHEFFLLKQK 1237
Score = 38 (18.4 bits), Expect = 1.6e-228, Sum P(4) = 1.6e-228
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 665 RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARL 699
+M M KP + I Q K E L+ +R R+
Sbjct: 1159 KMPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRI 1193
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 1438 (511.3 bits), Expect = 1.1e-220, Sum P(4) = 1.1e-220
Identities = 316/819 (38%), Positives = 488/819 (59%)
Query: 294 EILMKLEKKDFFLG-KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILH 352
+I + + DF + +PIT ++R+ +T+ P F W+DK+HG + FW+ V+DN+ YI H
Sbjct: 1174 KIAQQFPQLDFEIQVQPITANIIRINMTLIPMFSWNDKMHGDSQPFWIWVQDNESQYIFH 1233
Query: 353 HEYFLL-KKQYTE-EDHSLNFTVPIYEPLPPQHLI--LPEKFPPPTELLDLQLLPVTALQ 408
EYF+L KK Y + E +L +P+ P+P Q + + +++ + ++ +
Sbjct: 1234 SEYFMLTKKIYNQTEPITLTCIIPLPNPMPSQFFLHYISDRWLGSEGIREISFRHLVL-- 1291
Query: 409 NPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNII 468
P + + N +L + +Q L N + +L + F + + T N
Sbjct: 1292 -PQQDRVV-NTELLD-LQPLPKEALKNKD----FESLFKFSHFNPIQTQVFHTLYYTNNN 1344
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
++L +PTGSGKTICAE A+ + + M+ VYIAP++AL ++R DW+ KF ++L
Sbjct: 1345 VLLG-SPTGSGKTICAELAMFKVFRDEPH---MKVVYIAPLKALVRERMNDWKVKFQEKL 1400
Query: 529 GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 588
G +VELT + ++ L+ I+ +TPEKWD +SR WK R YV VSL IIDE+HLIG
Sbjct: 1401 GKKLVELTGDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGE 1460
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
GP+LEVIV+RM+ I+ Q IR+V LST++ANA DL EW+G G+FNF P RPV
Sbjct: 1461 LRGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPV 1520
Query: 649 PLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYS 708
P+E+ IQG N+ RM+ M KP++ AI ++ +KP L+FV SR+ RLTA+DL+ Y
Sbjct: 1521 PIEVHIQGFQGKNYCPRMQTMNKPSFAAIATYSP-KKPVLIFVSSRRQTRLTALDLISYL 1579
Query: 709 CKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAG 768
D+D + ++EP ++ ++++ LR TL G+G H GLN D+ +V +LF
Sbjct: 1580 VVDNDPLQ--WIQKGFDIEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGEN 1637
Query: 769 KIKVCVMSSSMCWEVPLTAHLAT--------GR-KMLI---LTTLLQMMGHAGRPLLDNS 816
KI++ + +S++ W V L AHL G+ K + LT +LQM+G AGRP D
Sbjct: 1638 KIQILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKE 1697
Query: 817 EKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF 876
K +++ H P K++YKKFLY+ FPVESHL FLHD+ NAEIV+G I++KQ A++YL TF
Sbjct: 1698 GKAMVMVHEPKKQFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTF 1757
Query: 877 ---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIA 933
RL +P+YY L+ S ++ +LS+L+++T++DLE + I + + ++ P + G IA
Sbjct: 1758 FFRRLVVSPSYYGLEDNSVEAVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMSMGKIA 1817
Query: 934 SYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSF 993
S+YY++YKT++ FS ++ + +K LL VL+ A+EY++ P+R EE L + L +
Sbjct: 1818 SFYYLNYKTVQNFSDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKI 1877
Query: 994 ANPKCTDPHVKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSL 1052
N + D H K + LLQAHF + + D + L R+LQAM+DV G+ +
Sbjct: 1878 GNYE--DSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFAT 1935
Query: 1053 ALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQEN 1091
A+ + + QM+ QG W++DS L+ LPH KD A N
Sbjct: 1936 AIQVIRLLQMLVQGRWDYDSSLMTLPHINKDFADFLSSN 1974
Score = 611 (220.1 bits), Expect = 2.5e-120, Sum P(4) = 2.5e-120
Identities = 131/359 (36%), Positives = 204/359 (56%)
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEI 857
LT +LQM+G AGRP D K +++ H P K++YKKFLY+ FPVESHL FLHD+ NAEI
Sbjct: 1679 LTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDPFPVESHLKDFLHDHLNAEI 1738
Query: 858 VAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATR 914
V+G I++KQ A++YL TF RL +P+YY L+ S ++ +LS+L+++T++DLE +
Sbjct: 1739 VSGTIQSKQGAINYLVNTFFFRRLVVSPSYYGLEDNSVEAVNQYLSDLLDSTLADLEQSS 1798
Query: 915 SIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPI 974
I + + ++ P + G IAS+YY++YKT++ FS ++ + +K LL VL+ A+EY++ P+
Sbjct: 1799 CIEINEYDEIIPMSMGKIASFYYLNYKTVQNFSDNIKRDSDIKTLLRVLSDAAEYSEFPV 1858
Query: 975 RPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHME-GNLKLDQEKVLLSA 1033
R EE L + L + N + D H K + LLQAHF + + D + L
Sbjct: 1859 RHNEEILNQELNENLPIKIGNYE--DSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQG 1916
Query: 1034 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQEN-- 1091
R+LQAM+DV G+ + A+ + + QM+ QG W++DS L+ LPH KD A N
Sbjct: 1917 IRILQAMIDVSFEYGYFATAIQVIRLLQMLVQGRWDYDSSLMTLPHINKDFADFLSSNLI 1976
Query: 1092 --PGRSIETV---FXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSEN 1145
G I + +SD Q+ + + P + + Y + + N
Sbjct: 1977 LSNGEQISNLSDMLKIPRDKIHLSLTNIGLSDSQIKETLNVIDHLPKVKIEYFINTNNN 2035
Score = 527 (190.6 bits), Expect = 3.0e-52, Sum P(3) = 3.0e-52
Identities = 174/583 (29%), Positives = 272/583 (46%)
Query: 470 VLQLAPTGSGKTICAEFAILRN-HQRASETGVM-----RAVYIAPIEALAKQRYCDWERK 523
+L APTG+GKT A IL + G + + +YIAP++ALA + +
Sbjct: 501 ILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKFSNS 560
Query: 524 FGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 583
K LG+ ELT + + K L++ QII++TPEKWD ++R+ + V L IIDE+
Sbjct: 561 L-KYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEI 619
Query: 584 HLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPP 643
HL+ + GPVLE IVAR + IRIV LS +L N KD+ +I A + G F
Sbjct: 620 HLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFIRAPASGTHFFDS 679
Query: 644 GVRPVPLEIQIQGV-DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAV 702
RPVPL GV D M + Y + + K ++FV SRK + +
Sbjct: 680 SYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQVMIFVHSRKDT-VKSA 738
Query: 703 DLMIYSCKD-----SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSD 757
+++ K+ S+++ +F + KE E ++ + +R+ + G+ H GL +SD
Sbjct: 739 EILSDMAKEKHFRFSNEEPSF--GAKKEFEK----VKSKEIRSLFQHGISVHHAGLLRSD 792
Query: 758 QEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMM 805
+ VV F G IKV V ++++ W V L AH + G ++ L ++ ++Q+
Sbjct: 793 RNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIF 852
Query: 806 GHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENK 865
G AGRP D S + +L ++Y + + P+ES L D+ NAEIV G + N
Sbjct: 853 GRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNV 912
Query: 866 QDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSI--IMED 920
+AV++L++T+ R+ QNP Y + S R L E I + A + +
Sbjct: 913 NEAVNWLSYTYLFIRMLQNPLVYGIPS-SQRSKDPQLEEFKREII--IRAAKKLEQCKMT 969
Query: 921 DMDLCPSNYGMIASYYYISYKTIECFSSSLTSK--TKMKGLLEVLASASEYAQLP-IRPG 977
D N GM S+ I+ S ++ G +VL S ++ I
Sbjct: 970 RFDEQSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSEFENITLR 1029
Query: 978 EEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG 1020
EEE + + D H K LLQA FS +++G
Sbjct: 1030 EEESTELDKLAENQCYYELTVLDSHSKVKCLLQAFFSRANIDG 1072
Score = 503 (182.1 bits), Expect = 1.1e-220, Sum P(4) = 1.1e-220
Identities = 106/218 (48%), Positives = 144/218 (66%)
Query: 3 RGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM 62
R DR +VE F +G ++VLV TA LAWGVNLPAHTVIIKGTQVYN + G + +L D+M
Sbjct: 790 RSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVM 849
Query: 63 QMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTV 122
Q+ GRAGRPQ+D+ GEG ++T +L +YLSLM+ +PIES+F++ L + LNAEIVLGTV
Sbjct: 850 QIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTV 909
Query: 123 QNAKEACNWIEYTYLYTRMLRNPVLYGL--SPEVLDITLGERITDLIHTAANVLDRNNLV 180
N EA NW+ YTYL+ RML+NP++YG+ S D L E ++I AA L++ +
Sbjct: 910 SNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKKLEQCKMT 969
Query: 181 KYGRKSGYFQSEKIKM-ELAKLLDRVPI--PVKESLEE 215
++ QSE + M EL ++ I P E+ E
Sbjct: 970 RFDE-----QSENLGMTELGRIASHYYIKHPSIETFNE 1002
Score = 353 (129.3 bits), Expect = 5.1e-35, Sum P(3) = 5.1e-35
Identities = 70/198 (35%), Positives = 121/198 (61%)
Query: 4 GDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQ 63
GDR +VE LF + +Q+L+ST+ LAWGVNLPAH VIIKGT+ ++ + + + D++Q
Sbjct: 1625 GDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQ 1684
Query: 64 MLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQ 123
M+GRAGRPQ+D G+ +++ + Q+Y + P+ES L + LNAEIV GT+Q
Sbjct: 1685 MIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQ 1744
Query: 124 NAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
+ + A N++ T+ + R++ +P YGL ++ + + ++DL+ + L++++ ++
Sbjct: 1745 SKQGAINYLVNTFFFRRLVVSPSYYGLEDNSVE-AVNQYLSDLLDSTLADLEQSSCIEIN 1803
Query: 184 RKSGYFQSEKIKMELAKL 201
Y E I M + K+
Sbjct: 1804 E---Y--DEIIPMSMGKI 1816
Score = 341 (125.1 bits), Expect = 3.5e-32, Sum P(3) = 3.5e-32
Identities = 81/301 (26%), Positives = 153/301 (50%)
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEI 857
++ ++Q+ G AGRP D S + +L ++Y + + P+ES L D+ NAEI
Sbjct: 845 ISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEI 904
Query: 858 VAGVIENKQDAVDYLTWTF---RLTQNPNYYNL---QGVSHRHLSDHLSELVENTISDLE 911
V G + N +AV++L++T+ R+ QNP Y + Q L + E++ LE
Sbjct: 905 VLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKKLE 964
Query: 912 ATRSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYA 970
+ ++ + L + G IAS+YYI + +IE F+ L + +L +L+++SE+
Sbjct: 965 QCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSEFE 1024
Query: 971 QLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKV 1029
+ +R E + +L +Q + D H K LLQA FS +++G +L D
Sbjct: 1025 NITLREEESTELDKLAENQ--CYYELTVLDSHSKVKCLLQAFFSRANIDGFSLVSDSNYT 1082
Query: 1030 LLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQ 1089
+ ++SR+L+ + ++ GW +++ +++ +MV +W +S L Q + D ++ +
Sbjct: 1083 VQNSSRILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKIE 1142
Query: 1090 E 1090
E
Sbjct: 1143 E 1143
Score = 167 (63.8 bits), Expect = 1.1e-220, Sum P(4) = 1.1e-220
Identities = 40/118 (33%), Positives = 66/118 (55%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MSAGR 246
E+ EL KL + L+ S K+ LLQ + S+ ++G SL SD ++ R
Sbjct: 1030 EEESTELDKLAENQCYYELTVLDSHS-KVKCLLQAFFSRANIDGFSLVSDSNYTVQNSSR 1088
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
+ R LFEI LK+GW +++ L L KMV ++W ++PLRQ + + + K+E++D+
Sbjct: 1089 ILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKIEERDW 1146
Score = 108 (43.1 bits), Expect = 1.1e-220, Sum P(4) = 1.1e-220
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 1142 DSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIK 1201
+++++ G++ +++ + R+ + G ++ Y K K+EGW +V+ D K Q++ K
Sbjct: 2061 NNKSIVYSGQEFNIKIKVTRE-NKKFSNGHAFAPLYSKDKDEGWIMVLTDEK-EQMIGFK 2118
Query: 1202 RVSLQRKSRAKLDFAAPVEGGKKT--YTLDFMCDSYMGCDQEYSFTVDV 1248
RV + +F P + + Y + D+YMG D ++F V +
Sbjct: 2119 RVPQMISNSVTANFKIPKAPFQSSTNYNVKLYSDTYMGLDYFHTFQVPI 2167
Score = 74 (31.1 bits), Expect = 3.3e-51, Sum P(3) = 3.3e-51
Identities = 19/91 (20%), Positives = 46/91 (50%)
Query: 200 KLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAG-----RLSRALFEI 254
+L + +PI + + E+ K+++LLQ + + L T+D + R+ +A+ ++
Sbjct: 1868 ELNENLPIKIG-NYEDSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDV 1926
Query: 255 VLKRGWSQLAEKALKLSKMVTKRMWSVQTPL 285
+ G+ A + ++L +M+ + W + L
Sbjct: 1927 SFEYGYFATAIQVIRLLQMLVQGRWDYDSSL 1957
Score = 59 (25.8 bits), Expect = 1.9e-61, Sum P(3) = 1.9e-61
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 414 ALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
A + + K N IQ++VF Y + +N+L++A
Sbjct: 475 AAFGSIKKLNRIQSRVFESAYKSNENILISA 505
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 1369 (487.0 bits), Expect = 6.3e-217, Sum P(3) = 6.3e-217
Identities = 325/808 (40%), Positives = 468/808 (57%)
Query: 261 SQLAEKALKLSKMVTKRMWSVQTPLRQFN-GIP-NEILMKLEKKDFFLG-KPITRTVLRV 317
++L EK L + K+ R + L N G+ + + ++ +PITRTVLRV
Sbjct: 1139 TRLEEKNLTVDKLKDMRKDEIGHMLHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRV 1198
Query: 318 ELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TEEDHSLNFTVP 374
L+I PDF W+D+VHG V E +W+ VED D+I H EYFL LKKQ ++E L FT+P
Sbjct: 1199 TLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIP 1258
Query: 375 IYEPLPPQHLI--LPEKF--PPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVF 430
I+EPLP Q+ I + +++ +++ Q L + P E L + + +
Sbjct: 1259 IFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCEAY 1318
Query: 431 AVLYNTEDNVLVAALSRKLMFARL-PAKQRITAALPNIIL-VLQLAPTGSGKTICAEFAI 488
LYN F+ P + +I L + VL APTGSGKT+ AE AI
Sbjct: 1319 EALYN---------------FSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAI 1363
Query: 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEK 548
R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT + D+K + K
Sbjct: 1364 FRVFNKYPTS---KAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAK 1420
Query: 549 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQV 608
+I++TPEKWD +SR W+ R YV+QV++ IIDE+HL+G + GPVLEVIV+R +I+S
Sbjct: 1421 ADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHT 1480
Query: 609 ENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKA 668
E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG ++ RM +
Sbjct: 1481 EKPVRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMAS 1540
Query: 669 MTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728
M KPT+ AI H+ KP L+FV SR+ RLTA++L+ + + D K +L +E+E
Sbjct: 1541 MNKPTFQAIRSHSP-AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMEN 1598
Query: 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH 788
+ +++ L+ TL G+G H GL++ D++ V LF K++V + +S++ W V AH
Sbjct: 1599 IIGTLRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAH 1658
Query: 789 LA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836
L T R + +T +LQMMG AGRP D+ K VIL H K++YKKFLY
Sbjct: 1659 LVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLY 1718
Query: 837 EAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHR 893
E FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+YYNL VSH
Sbjct: 1719 EPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLSDVSHD 1778
Query: 894 HLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTS 952
++ LS LVE ++ +LE + I I ED+ + P YG IASYYY+ ++T++ F L
Sbjct: 1779 SVNKFLSSLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKP 1838
Query: 953 KTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-PHVKANALLQA 1011
+ + LL +L+ A EY LP+R E+ + L +NP D PH KA+ LLQA
Sbjct: 1839 ECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLE-SNPHSFDSPHTKAHLLLQA 1897
Query: 1012 HFSARHME-GNLKLDQEKVLLSASRLLQ 1038
H S + + D + VL A R+ Q
Sbjct: 1898 HLSRTMLPCPDYDTDTKTVLDQALRVCQ 1925
Score = 626 (225.4 bits), Expect = 3.2e-56, Sum P(2) = 3.2e-56
Identities = 200/704 (28%), Positives = 334/704 (47%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ + N IQ+ VF YNT +N+L+ A P A NI ++ L
Sbjct: 471 FKGMRRLNRIQSIVFETAYNTNENMLICA----------PTG----AGKTNIAMLTVL-- 514
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535
I F Q + + VY+AP++ALA + + ++ + LG+ V EL
Sbjct: 515 ----HEIRQHF-----QQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGIVVKEL 564
Query: 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVL 594
T + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVL
Sbjct: 565 TGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVL 624
Query: 595 EVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEI 652
E IVAR +R + S ++ IRI+ LS +L N D+ ++ + G+F F RPVPL
Sbjct: 625 ESIVARTLRQVES-TQSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQ 683
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
GV N ++ M + Y ++++ K +VFV +R TA+ L I K+S
Sbjct: 684 TFLGVKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNS 742
Query: 713 DQKSAFLLCSAKE---VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK 769
Q S FL E E V + + +R G H G+ + D+ +V LF G
Sbjct: 743 GQISCFLPSQGSEYGHAEKQVQKSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGH 802
Query: 770 IKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMMGHAGRPLLDNSE 817
IKV V ++++ W V L AH + G ++ L + ++Q+ G AGRP D
Sbjct: 803 IKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFG 862
Query: 818 KCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF- 876
+ +I+ +Y L + P+ES L DN NAEI G + N ++AV ++++T+
Sbjct: 863 EGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYL 922
Query: 877 --RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMDLCPS- 927
R+ NP Y G+SH+ L+ H +LV L+ R I E+ S
Sbjct: 923 YVRMRANPLVY---GISHKAYQVDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSST 979
Query: 928 NYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLIN 987
+ G AS+YYI Y TIE F+ + + +++ A E+ Q+ +R E E + L+N
Sbjct: 980 DLGRTASHYYIKYNTIETFNEFFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDALLN 1039
Query: 988 HQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISS 1046
+ A + + K N LLQ + S M+ +L D V +A+R+++A+ ++
Sbjct: 1040 NFCELAAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALR 1099
Query: 1047 NGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQE 1090
W ++ + +S+++ + +W S L Q + R +E
Sbjct: 1100 KRWPAMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEE 1143
Score = 560 (202.2 bits), Expect = 6.3e-217, Sum P(3) = 6.3e-217
Identities = 106/193 (54%), Positives = 141/193 (73%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH VIIKGTQ+Y ++G++ +L LD
Sbjct: 786 MLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILD 845
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 846 VMQIFGRAGRPQFDRFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIALG 905
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA WI YTYLY RM NP++YG+S + +D TL + L+ LD+
Sbjct: 906 TVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQVDPTLAKHREQLVIEVGRKLDKAR 965
Query: 179 LVKYGRKSGYFQS 191
++++ ++GYF S
Sbjct: 966 MIRFEERTGYFSS 978
Score = 350 (128.3 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 66/179 (36%), Positives = 114/179 (63%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR+ VE+LF + VQVL++T+ LAWGVN PAH VIIKGT+ Y+ + + + D++QM
Sbjct: 1627 DRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQM 1686
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ+D G+ +I+ + +Y + + P+ES + L++ LNAEI GT+ +
Sbjct: 1687 MGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITS 1746
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
++A ++I +TY + R++ NP Y LS +V ++ + ++ L+ + L+ + ++ G
Sbjct: 1747 KQDAMDYITWTYFFRRLIMNPSYYNLS-DVSHDSVNKFLSSLVEKSLVELEHSYCIEIG 1804
Score = 215 (80.7 bits), Expect = 6.3e-217, Sum P(3) = 6.3e-217
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 190 QSEKIKMELAKLLDRV-PIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ E+I+ EL LL+ + +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1027 REEEIE-ELDALLNNFCELAAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 1085
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K+
Sbjct: 1086 AARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKN 1145
Query: 304 FFLGK 308
+ K
Sbjct: 1146 LTVDK 1150
Score = 51 (23.0 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 192 EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKL 233
+ + ELAK L P S + P K ++LLQ ++S+ L
Sbjct: 1865 DHMNSELAKCLPLESNP--HSFDSPHTKAHLLLQAHLSRTML 1904
Score = 48 (22.0 bits), Expect = 3.6e-66, Sum P(3) = 3.6e-66
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 1183 EGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKLDFAAPV-EGGKKTYTLDFMCDSY 1235
E WW+ V+D + + L +K+ + ++++ L F P+ E Y + + D +
Sbjct: 1218 EPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQL-LVFTIPIFEPLPSQYYIRAVSDRW 1276
Query: 1236 MGCD 1239
+G +
Sbjct: 1277 LGAE 1280
Score = 38 (18.4 bits), Expect = 4.3e-141, Sum P(2) = 4.3e-141
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 292 PNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWD 328
P I++K D L K +LR ++ +T +WD
Sbjct: 556 PLGIVVKELTGDMQLSK---NEILRTQMLVTTPEKWD 589
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 1359 (483.5 bits), Expect = 8.9e-214, Sum P(4) = 8.9e-214
Identities = 312/797 (39%), Positives = 464/797 (58%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFLLKKQYTEED 366
+PITRTVLR+++ I P F W+D+VHG + FW+ +ED + +YI H E F + ++
Sbjct: 1199 QPITRTVLRIKVDIWPSFTWNDRVHGKTCQSFWLWIEDPESNYIYHSELFQVTRKLVMSG 1258
Query: 367 HS--LNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNP 424
S L T+P+ EPLPPQ+ I + L +P++ Q+ + P
Sbjct: 1259 QSQQLVMTIPLKEPLPPQYYI---RVSSDNWLGSTTCIPLS-FQHLVLPEHHPPLTELLP 1314
Query: 425 IQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIIL-VLQLAPTGSGKTIC 483
++ + L NV+ +L + F P + +I L + VL APTGSGKTI
Sbjct: 1315 LRPLPVSCL----KNVVYESLYKFTHFN--PIQTQIFHCLYHTDNNVLLGAPTGSGKTIV 1368
Query: 484 AEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE-LGMCVVELTVETAMD 542
AE AI R ++ + VYIAP++AL K+R DWE++F + LG+ VVELT + D
Sbjct: 1369 AEIAIFR---ALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPD 1425
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
++ + + Q+I++TPEKWD +SR W+ R+YVQ VSL +IDE+HL+G GPV+EVIV+R
Sbjct: 1426 IQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1485
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
+I+S IRIV LST+LANA+DL W+G + G++NF P VRPVPL++ I G ++
Sbjct: 1486 FISSHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNFKPSVRPVPLQVHINGFPGKHY 1545
Query: 663 EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
RM M +PT+ AI ++ E P +VFV SR+ RLTA+DL+ + +S+ K FL
Sbjct: 1546 CPRMATMNRPTFQAIRTYSPCE-PTIVFVSSRRQTRLTALDLITFVAGESNPKQ-FLHIP 1603
Query: 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
E+E + I+E+ L+ L G+G H GL + D++ V LF KI++ V ++++ W
Sbjct: 1604 EDEIELILQNIREQNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWG 1663
Query: 783 VPLTAHLAT--------GR-KMLI---LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830
V L AHL G+ K + +T +LQMMG AGRP DN V+L H K +
Sbjct: 1664 VNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNF 1723
Query: 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
YKKFLY+ FPVES L L ++ NAEIVAG +++KQ A+DYLTWT+ RL +NP+YY L
Sbjct: 1724 YKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQL 1783
Query: 888 QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFS 947
Q + ++++ +S LVE + +L A ++ E D L P+ G I+SYYY+SY+T++ F
Sbjct: 1784 QDIEPENVNNFMSNLVERVVYELSAAACLV-ERDGCLIPTFLGRISSYYYLSYRTMKHFL 1842
Query: 948 SSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANA 1007
L K +L +A + E+ QLP+R E++ + RF + + K
Sbjct: 1843 EDLQPGMNTKKVLLAIADSYEFDQLPVRHNEDKHNEEMAEVSRFRPPSSSWDSSYTKTFL 1902
Query: 1008 LLQAHFSARHMEGNLKL-DQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQG 1066
LLQAHF+ + + + L D + L +A+R++QAMVD + GWLS L+ ++ Q V Q
Sbjct: 1903 LLQAHFARQSLPNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQLMQSVIQA 1962
Query: 1067 MWEHDSMLLQLPHFTKD 1083
W S L LP +D
Sbjct: 1963 RWFDGSEFLTLPGVNED 1979
Score = 582 (209.9 bits), Expect = 3.1e-61, Sum P(2) = 3.1e-61
Identities = 198/744 (26%), Positives = 347/744 (46%)
Query: 386 LPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAAL 445
+P PPP + + ++ + L + A + N K N IQ+ VF V Y++ +N+LV A
Sbjct: 453 IPASEPPPLSVGNKRV-QIEELDDVGRLA-FANCKELNRIQSVVFPVAYHSNENMLVCA- 509
Query: 446 SRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTIC-AEFAILRNHQRASETGVMRAV 504
P T A + +L + T C E ++ + + V
Sbjct: 510 ---------P-----TGAGKTNVAMLSIVHT----IRCHLEQGVINRDE-------FKIV 544
Query: 505 YIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSR 564
YIAP++ALA + ++ ++ K L + V ELT + + + QI+++TPEKWD ++R
Sbjct: 545 YIAPMKALAAEMVDNFSKRL-KSLQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTR 603
Query: 565 RWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623
+ + V L IIDE+HL+ G+ GPV+E +VAR + ++ IRIV LS +L N
Sbjct: 604 KGSGDVALISLVELLIIDEVHLLHGERGPVVEALVARTLRLVESSQSMIRIVGLSATLPN 663
Query: 624 AKDLGEWIGASS-HGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAK 682
D+ ++ + G+F F RPVPL+ G+ ++ M + Y ++ +
Sbjct: 664 YIDVAHFLRVNPMKGLFYFDSRFRPVPLDTNFVGIKSVKQLQQIADMDQCCYQKCVEMVQ 723
Query: 683 NEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATL 742
+VFV +R A + +++ + ++ + FL + IQ + +
Sbjct: 724 EGHQIMVFVHARN-ATVRTANVIRELAQQNNTSALFLPKDSAAHGLATRSIQRSRNKQLV 782
Query: 743 RL---GVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM-- 795
L G+ H G+ ++D+++V F G I V V ++++ W V L AH + G +
Sbjct: 783 ELFSCGLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYD 842
Query: 796 --------LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHH 847
L + +LQ+ G AGRP D S I+ +Y L FP+ES+ +
Sbjct: 843 AKHGSFVDLGILDVLQIFGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTNQFPIESNFVN 902
Query: 848 FLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLS-DHLSE-- 901
L DN NAEI G I N +A+++L++T+ R+ NP+ Y G+ + L D E
Sbjct: 903 CLADNLNAEIGLGTITNVDEAIEWLSYTYLFVRMRINPHVY---GIEYSELEKDPTLEAR 959
Query: 902 ---LVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMK 957
L+ + L+ R + + MD+ ++ G ASY+YI Y T+E F+ +
Sbjct: 960 RRALIMSAAMSLDKARMMRFNQRTMDMNITDLGRTASYFYIKYDTVETFNELMKPFMTQA 1019
Query: 958 GLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPK--CTDPHVKANALLQAHFSA 1015
+L +++ A E+ QL +R E E + L N + P + H K N L+Q + S
Sbjct: 1020 EILAMISQAQEFQQLKVRDDEMEELDELKN--AYCKIKPYGGSENVHGKVNILIQTYLSN 1077
Query: 1016 RHMEG-NLKLDQEKVLLSASRLLQAMVDVI--SSNGWLSLALLAMEVSQMVTQGMWEHDS 1072
+++ +L D + + R+ +A+ ++ +N LS +L ++ +M + W+ D
Sbjct: 1078 GYVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNAVLSGNML--QLCKMFERRQWDFDC 1135
Query: 1073 MLLQLPHFTKDLAKRCQENPGRSI 1096
L Q P + + E G S+
Sbjct: 1136 HLKQFPTINAETIDKL-ERRGLSV 1158
Score = 488 (176.8 bits), Expect = 8.9e-214, Sum P(4) = 8.9e-214
Identities = 96/188 (51%), Positives = 130/188 (69%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DRQ+VE F +GH+ VLV TA LAWGVNLPAH VII+GT +Y+ + G++ +L LD
Sbjct: 796 MLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGSFVDLGILD 855
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++Q+ GRAGRPQ+D G G IIT + +L +YLSL+ Q PIES FV+ LA+ LNAEI LG
Sbjct: 856 VLQIFGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTNQFPIESNFVNCLADNLNAEIGLG 915
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
T+ N EA W+ YTYL+ RM NP +YG+ L D TL R LI +AA LD+
Sbjct: 916 TITNVDEAIEWLSYTYLFVRMRINPHVYGIEYSELEKDPTLEARRRALIMSAAMSLDKAR 975
Query: 179 LVKYGRKS 186
++++ +++
Sbjct: 976 MMRFNQRT 983
Score = 366 (133.9 bits), Expect = 6.4e-39, Sum P(3) = 6.4e-39
Identities = 76/198 (38%), Positives = 124/198 (62%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
++ DR+ VE+LF + +Q+LV+TA LAWGVNLPAH V+IKGT+ ++ + + ++ D
Sbjct: 1634 LQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDMPITD 1693
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QM+GRAGRPQ+D+ G +++ + +Y + P+ES + L E +NAEIV G
Sbjct: 1694 VLQMMGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFPVESSLLGVLPEHINAEIVAG 1753
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLS---PEVLD---ITLGERITDLIHTAANVL 174
TVQ+ + A +++ +TY + R+LRNP Y L PE ++ L ER+ + AA ++
Sbjct: 1754 TVQSKQAALDYLTWTYFFRRLLRNPSYYQLQDIEPENVNNFMSNLVERVVYELSAAACLV 1813
Query: 175 DRNN-LVK--YGRKSGYF 189
+R+ L+ GR S Y+
Sbjct: 1814 ERDGCLIPTFLGRISSYY 1831
Score = 166 (63.5 bits), Expect = 8.9e-214, Sum P(4) = 8.9e-214
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 214 EEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRALFEIVLKRGWSQLAEKAL 268
E K+N+L+QTY+S ++ SL+SDMS GR+SRALF IVL++ + L+ L
Sbjct: 1061 ENVHGKVNILIQTYLSNGYVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNAVLSGNML 1120
Query: 269 KLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+L KM +R W L+QF I E + KLE++
Sbjct: 1121 QLCKMFERRQWDFDCHLKQFPTINAETIDKLERR 1154
Score = 143 (55.4 bits), Expect = 8.9e-214, Sum P(4) = 8.9e-214
Identities = 37/109 (33%), Positives = 59/109 (54%)
Query: 1151 EDTTLQVVLER-DLGGRTELG----PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSL 1205
ED L V L+R ++ G+ G V+ +YPK K E W+L + ++LLA+KRVS+
Sbjct: 2074 EDYVLIVNLQRLNVSGQRRGGGQSYTVHCPKYPKPKNEAWFLTLGSQANDELLAMKRVSI 2133
Query: 1206 Q-RKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAGE 1253
+ ++ ++ F A G+ TL M D MG DQ+Y ++ +A E
Sbjct: 2134 RGQRCTNRISFQATPRLGRLQLTLYLMSDCLMGFDQQYDLQFEIIDAKE 2182
Score = 63 (27.2 bits), Expect = 4.3e-52, Sum P(3) = 4.3e-52
Identities = 26/146 (17%), Positives = 58/146 (39%)
Query: 208 PVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQ 262
P S + K +LLQ + ++ L +D +A R+ +A+ + +RGW
Sbjct: 1888 PPSSSWDSSYTKTFLLLQAHFARQSLPNSDYLTDTKSALDNATRVMQAMVDYTAERGWLS 1947
Query: 263 LAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEIL---MKLEKKDF-FLGKPITRTVLRVE 318
+L + V + W + G+ + L + + D+ +L P+ + + + E
Sbjct: 1948 TTLVVQQLMQSVIQARWFDGSEFLTLPGVNEDNLDAFLNIPHDDYDYLTLPVLKELCKQE 2007
Query: 319 LTITPDFQWDDKVHGYVELFWVIVED 344
+ D +E + +++D
Sbjct: 2008 YEVLAKPLRDAFEEHEIEKMYKVIQD 2033
Score = 52 (23.4 bits), Expect = 1.3e-152, Sum P(3) = 1.3e-152
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 97 QQLPIESQFVSKLAELLNAEIVL---GTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPE 153
QQL + + +L EL NA + G +N N + TYL +++ + LS +
Sbjct: 1032 QQLKVRDDEMEELDELKNAYCKIKPYGGSENVHGKVNILIQTYLSNGYVKS---FSLSSD 1088
Query: 154 VLDITLG-ERITDLIHTAANVLDRNNLVKYG 183
+ IT RI+ + + VL +NN V G
Sbjct: 1089 MSYITTNIGRISRALFSI--VLRQNNAVLSG 1117
Score = 49 (22.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/82 (21%), Positives = 39/82 (47%)
Query: 1018 MEGNLKLDQEKVLLSASRLL--QAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLL 1075
+E + KLD E +++ +L Q +V+ + + +L + ++V + + E D +
Sbjct: 230 LEISAKLDDEHLIIRVGDILGSQRSSEVLQNE---LMEILGFDYFELVEKLLMERDKIAR 286
Query: 1076 QLPHFTKDLAKRCQENPGRSIE 1097
QL F ++R E + +E
Sbjct: 287 QLDQFATR-SRRVMEVKQKRME 307
Score = 41 (19.5 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 12/59 (20%), Positives = 29/59 (49%)
Query: 1152 DTTLQVVLERDLGGRTELGPVYS-NRYPKAKE-EGWWLVVDDAKTNQLLAIKRVSLQRK 1208
+ +LQ + L + ++ P ++ N K + +WL ++D ++N + + + RK
Sbjct: 1195 EASLQPITRTVLRIKVDIWPSFTWNDRVHGKTCQSFWLWIEDPESNYIYHSELFQVTRK 1253
Score = 38 (18.4 bits), Expect = 1.2e-61, Sum P(4) = 1.2e-61
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 625 KDLGEWIGASSHGVFNFPPGVRPVPL-EIQIQGVDITNFEARMKAMTKPTYT 675
++L EW+ ++++ +PL E++ IT R+K P++T
Sbjct: 1167 RELKEWLRSNTYADLVIR-SAHELPLLEVEASLQPITRTVLRIKVDIWPSFT 1217
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 1281 (456.0 bits), Expect = 1.5e-198, Sum P(3) = 1.5e-198
Identities = 320/918 (34%), Positives = 474/918 (51%)
Query: 309 PITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHS 368
P+T+ VLR+ L ITP+F WD + HG ++FW+ VED++G ILHHE LL K+ H
Sbjct: 999 PLTKNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHL 1058
Query: 369 LNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQ 428
L+FT+P+ PLP Q I+ + L + + +L N + +Q
Sbjct: 1059 LSFTIPVSNPLPSQLYIIAVS----DKWLGAETVTPVSLSNVVFHDDSNPITELLDLQPL 1114
Query: 429 VFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAI 488
L+ D VL +++ F Q + APTGSGKT+ AE A
Sbjct: 1115 PITALH---DPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELAT 1171
Query: 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEK 548
R ++ V VYIAP++AL K+R DW + + +G+ ++ELT +T D+K +
Sbjct: 1172 WRALHNYPKSKV---VYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTN 1228
Query: 549 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQV 608
III+TPEKWD ++R WK RKYVQ VSL I+DE+HL+G GPVLE+IV+RM Y+ASQ
Sbjct: 1229 ANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVSRMNYVASQT 1288
Query: 609 ENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKA 668
K+R++ LST++ANA DL W+ G+FNF VRPVPLEI I G + RM +
Sbjct: 1289 NKKVRVLGLSTAVANANDLANWLNIRD-GLFNFRHSVRPVPLEIYIDGFPGRAYCPRMMS 1347
Query: 669 MTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728
M KP + AI H+ + P L+FV SR+ RLTA DL+ + C D FL +E+E
Sbjct: 1348 MNKPAFQAIKTHSPTQ-PVLIFVSSRRQTRLTAKDLIAF-CGLEDNPRRFLYMDEEELEM 1405
Query: 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH 788
VS ++++ L+ L G+ H GL ++D+++ LF K+++ + +S++ W V AH
Sbjct: 1406 IVSEVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAH 1465
Query: 789 LAT------------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836
L G K + LT +LQM+G AGRP DNS I K +YK FL+
Sbjct: 1466 LVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLH 1525
Query: 837 EAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHR 893
FPVES+LH L ++ NAEI G I+ Q A+D+LT T+ R+ QNP YY G +
Sbjct: 1526 SGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYGADGDDQK 1585
Query: 894 HLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSK 953
+ +LS+LV ++LE + I ++ P+ G I SYYY+ + TI F +T
Sbjct: 1586 SIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLFHTTIRNFVQKITEN 1645
Query: 954 TKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQ-RFSFA--NPKCTDPHVKANALLQ 1010
+ L++LA ASE+ L IR E+ L+ IN ++S A N D HVKA L Q
Sbjct: 1646 AEFDLALQLLAEASEFDDLAIRHNED-LINIEINKSLKYSAACLNLPMVDAHVKAFILTQ 1704
Query: 1011 AHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWE 1069
AH + + + D VL R++Q+ +DV + G+ + L + + Q + Q +
Sbjct: 1705 AHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQCLKQACYP 1764
Query: 1070 HDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCN 1129
+ LP E R F +D + DI N
Sbjct: 1765 SEIYRASLPGLNAS-----SEKEARDYLNKFAGNKTDELYQML---CNDPNVFDIESLVN 1816
Query: 1130 RFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGP---VYSNRYPKAKEEGWW 1186
+SY + E V D L + L R L L P +++ +PK + EG++
Sbjct: 1817 SL----ISYPKMNIE-VSQSSSDKLL-LYLRR-LN--QPLNPDFYIFAPLFPKPQSEGFF 1867
Query: 1187 LVVDDAKTNQLLAIKRVS 1204
+++ D++T +L AI+R S
Sbjct: 1868 VLIIDSETQELFAIRRAS 1885
Score = 498 (180.4 bits), Expect = 1.5e-198, Sum P(3) = 1.5e-198
Identities = 95/190 (50%), Positives = 134/190 (70%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR L E LF G +++L TA LAWGVNLPA+ V+IKGTQ+Y+P+KG++ +L LD
Sbjct: 595 MLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLD 654
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++Q+ GRAGRPQ++S IIT H +L +Y+S++ QQ PIES+F +L + LNAE+ LG
Sbjct: 655 VLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLG 714
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TV N EA +W+ YTYLY RM RNP++YG++ + L D LG + +L+ AA L N
Sbjct: 715 TVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRELVSVAAGRLADNQ 774
Query: 179 LVKYGRKSGY 188
++ Y +K+GY
Sbjct: 775 MIVYNKKNGY 784
Score = 488 (176.8 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 202/896 (22%), Positives = 399/896 (44%)
Query: 382 QHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVL 441
+ +I+P P ++ +LL ++++ + + +Y+ N IQ+ V+ + Y T +N+L
Sbjct: 240 EEIIVPHAQRAP-QMQGEKLLEISSMDILCRKT-FLSYQTLNRIQSLVYPIAYKTNENML 297
Query: 442 VAALSR--KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETG 499
+ A + K A L Q I+ + ++ L+ + P + +F I+
Sbjct: 298 ICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRD---DFKIVY-------IA 347
Query: 500 VMRAVYIAPIEALAKQRYCDW----ERKFGKELGMCVVELTVETAMDLKLLEKGQIIIST 555
M+A+ +E + K+ W R+ ++ + E+ ET + + EK ++ +
Sbjct: 348 PMKALAAEVVEKMGKR--LAWLGLKTRELTGDMQLTKTEIA-ETQILVTTPEKWDVV-TR 403
Query: 556 PEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIV 615
D + ++V L IIDE+H++ + G V+E +VAR + + + IRIV
Sbjct: 404 KSVGDT--------QLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIV 455
Query: 616 ALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY 674
LS +L N D+ +++G + + G+F F RP P+E G + + + +
Sbjct: 456 GLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKIVNSN-IDEACF 514
Query: 675 TAIMQHAKNEKPALVFVPSRKYARLTAVDL--MIYSCKDSDQKSAFLLCSAKEVEPHVSI 732
+++ + ++FV SRK +A L + ++D + VS
Sbjct: 515 DKVLKLIQEGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYSLAQRDVSK 574
Query: 733 IQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LA 790
+ + L+ + +G + G+ +SD+ + LF G +K+ ++++ W V L A+ L
Sbjct: 575 SKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLI 634
Query: 791 TGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFP 840
G ++ L + +LQ+ G AGRP ++S I+ +Y + + P
Sbjct: 635 KGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSP 694
Query: 841 VESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL---QGVSHRH 894
+ES L DN NAE+ G + N +AV +L +T+ R+ +NP Y + + V
Sbjct: 695 IESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPL 754
Query: 895 LSDHLSELVENTISDLEATRSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSSLTSK 953
L ELV L + I+ L P + G IAS YYI+Y+T+ ++ L SK
Sbjct: 755 LGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSK 814
Query: 954 TKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHF 1013
++ +L+ SE++Q+ R E + L+ + ++ K N +LQ++
Sbjct: 815 MSEADIIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYI 874
Query: 1014 SARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDS 1072
S H+E L D V +A R+ +A+ ++ S W S A + +++ + + W +
Sbjct: 875 SRAHVEDFTLTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEH 933
Query: 1073 MLLQ--LPHFTKDLAKRCQENPGR-SIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCN 1129
LLQ LPH DLA + + G S+E + +M + +F +
Sbjct: 934 PLLQFDLPH---DLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPT----VKKFIS 986
Query: 1130 RFPNIDMSYKVQD-SENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLV 1188
+ P ++++ + ++NV L++VL ++ RY + +W+
Sbjct: 987 KLPLLNINVDLLPLTKNV--------LRLVLNITPNFNWDM------RY-HGNSQMFWIF 1031
Query: 1189 VDDAKTNQLLAIKRVSLQRKSRAK---LDFAAPVEGG--KKTYTLDFMCDSYMGCD 1239
V+D+ ++L +++ L +++ + L F PV + Y + + D ++G +
Sbjct: 1032 VEDSNGLEILHHEQLLLNKRNVSTSHLLSFTIPVSNPLPSQLYIIA-VSDKWLGAE 1086
Score = 332 (121.9 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 66/177 (37%), Positives = 107/177 (60%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ DR++ E+LF + VQ+L++T+ LAWGVN PAH VI+KGT+ Y+ + G + ++ D
Sbjct: 1430 LTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTD 1489
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QMLGRAGRPQ+D+ G I + +Y ++ P+ES L LNAEI G
Sbjct: 1490 VLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATG 1549
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRN 177
T+ + A +++ TY Y R+ +NPV YG + ++ ++ L+ TA N L+++
Sbjct: 1550 TIDCIQGAMDFLTCTYFYRRVHQNPVYYGADGDDQK-SIDTYLSKLVVTAFNELEKS 1605
Score = 204 (76.9 bits), Expect = 1.5e-198, Sum P(3) = 1.5e-198
Identities = 44/112 (39%), Positives = 73/112 (65%)
Query: 197 ELAKLLDRV-PIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MSAGRLSRA 250
EL L++ P +++S+ S K+NV+LQ+YIS+ +E +LTSD +AGR++RA
Sbjct: 842 ELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFTLTSDTNYVAQNAGRITRA 901
Query: 251 LFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
LFEI + R W+ A L L+K + +R WS + PL QF+ +P+++ +K+E +
Sbjct: 902 LFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEHPLLQFD-LPHDLAVKVENQ 951
Score = 37 (18.1 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
Identities = 16/82 (19%), Positives = 37/82 (45%)
Query: 194 IKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAG-----RLS 248
I +E+ K L + + + K +L Q ++++LKL +D S R+
Sbjct: 1673 INIEINKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRII 1732
Query: 249 RALFEIVLKRGWSQLAEKALKL 270
++ ++ + G+S + + + L
Sbjct: 1733 QSYIDVSAELGYSHVCLQYISL 1754
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 984 (351.4 bits), Expect = 3.6e-197, Sum P(4) = 3.6e-197
Identities = 258/796 (32%), Positives = 431/796 (54%)
Query: 477 GSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFG---KELGMCVV 533
G GKT+ AE AIL NH ++ G R VYI P + L + + W F KE+ +
Sbjct: 1232 GDGKTVLAELAIL-NHWN-NKKG--RIVYINPCQELVDKLFKKWSTFFSSYEKEINVLSG 1287
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 593
L ++A + + +I++TPE+++ LS+RWK RK + + LFI D+LHL+G
Sbjct: 1288 NLREDSAS----VNQSHLILATPEQFNCLSKRWKTRKAFRSIDLFIWDDLHLVGSDVH-- 1341
Query: 594 LEVIVARMRYIASQVEN-KIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEI 652
E++V R+R + SQ ++ K+RIVALS+ + N++D+ EWIG + FNF P R E
Sbjct: 1342 YEMLVTRVRMLTSQWDDYKLRIVALSSPVLNSRDIAEWIGVAKSETFNFAPHSR----EN 1397
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
+I + ++ T Y + + + L+F PS Y + A + M +S ++
Sbjct: 1398 RITEIKLS---VESSDNTVKIYKDLAKVNSGLRNTLIFAPS--Y--IHAFE-MAHSMVEN 1449
Query: 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV 772
+Q + ++E ++S IQ +L+ L G+ + G+ + D+ +V LFE+ I V
Sbjct: 1450 NQAQEWRSVDLLKLEKYISKIQNPLLKNLLPKGIAVFYSGMARVDRLIVERLFESKSIGV 1509
Query: 773 --CVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGR----PLLDNSEK--C----- 819
C M +S P T + + T + GH R PL D E C
Sbjct: 1510 LFCTMDTSKF--AP------TANNVFVAGTRVYD-GHEHRFLDYPLNDLYEMVGCCQDGG 1560
Query: 820 VILCHAPHK--EYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF- 876
V+ + + E+Y FL VES L + LH+ F + G+I+ +Q+ +D LT+TF
Sbjct: 1561 VVHIYTTSQMVEFYSSFLNSGLAVESLLSNSLHEFFMDAVANGIIKQRQNCIDVLTFTFF 1620
Query: 877 --RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMD-LCPSNYGMIA 933
RL +NP++Y+L+ VS+ +S +LSEL+E+ D I ED+ D + P N +IA
Sbjct: 1621 YRRLLKNPSFYDLKEVSNSGISTYLSELIESVFDDFNKEEFIEEEDEGDTISPLNKIVIA 1680
Query: 934 SYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSF 993
S+Y +++T+ S L++K+K+K + L +A+E++ LP+R GE+ L+ +L +
Sbjct: 1681 SHYNSTFETVSNLSK-LSNKSKLKDIFHALTNATEFSDLPVREGEDALLIKLQTKLPIKY 1739
Query: 994 ANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLA 1053
+ P KA LLQAH S + +L+ DQ+ VL ++L A +D++SS+G L++
Sbjct: 1740 SQDDYESPFFKAFILLQAHISRISIPFDLRQDQKSVLTRVLQILNAAIDILSSDGSLNV- 1798
Query: 1054 LLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXX 1113
LLAM++SQM+ Q +W D+ L Q+P FT ++ RC ++ ++ETV+
Sbjct: 1799 LLAMDLSQMIVQAVWSSDNPLRQVPRFTNEILARCTQH---NVETVYDIMSLEDEERNEI 1855
Query: 1114 XQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVY 1173
Q+ D +L ++A F N +PNI++SY+++ E + V ++RD + L V
Sbjct: 1856 LQLPDQELNEVASFVNSYPNIELSYEMKGGVT---SNESKFVTVTIDRDEEIES-LEVVK 1911
Query: 1174 SNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRA-KLDFAAPVEGGKKTYTLDFMC 1232
+ +P K+E WW+VV D+KT L IK+V++Q+ S++ +++F P +G K T+ +C
Sbjct: 1912 NENFPVTKQENWWIVVGDSKTRHLYGIKKVNIQKISQSFEIEFTIPNKG-KHELTIYLIC 1970
Query: 1233 DSYMGCDQEYSFTVDV 1248
DSY+ D+E F +DV
Sbjct: 1971 DSYLDADKEMEFVIDV 1986
Score = 718 (257.8 bits), Expect = 1.7e-68, Sum P(2) = 1.7e-68
Identities = 196/633 (30%), Positives = 318/633 (50%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVM-----RAVYIAPIEALAKQRYCDWERKF 524
+L APTG+GKT A ILR + G + + VYIAP++AL +++ +++R+
Sbjct: 392 LLICAPTGAGKTNVAMLTILRTIENFRNNGHIQLKNFKIVYIAPLKALVQEQMREFQRRL 451
Query: 525 GKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 584
G+ V ELT ++++ + + + QII++TPEKWD ++R K YV+ V L IIDE+H
Sbjct: 452 TSVYGVVVNELTGDSSLSKQQIAETQIIVTTPEKWDIITR--KDPSYVKLVKLMIIDEIH 509
Query: 585 LIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPG 644
L+ + GPVLE +V+R + + IRIV LS +L N D+ ++I A G+F F
Sbjct: 510 LLHDERGPVLESLVSRAIRKSETTGSDIRIVGLSATLPNYADVAKFIRAKPEGLFYFDAS 569
Query: 645 VRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDL 704
RP PLE GV R+ AM + Y + Q ++ ++FV SRK TA L
Sbjct: 570 YRPCPLEQVYIGVKEQKAIKRIAAMNEACYDRMHQSLQDRHQLIIFVHSRKETFTTAKYL 629
Query: 705 MIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTL 764
M D ++ +E E + L+ + G G H GL K D+ VV L
Sbjct: 630 MEKLDIDIVEQEGVKEILKQEGES----MSNPKLKEVIPRGFGIHHAGLTKKDRGVVEDL 685
Query: 765 FEAGKIKVCVMSSSMCWEVPLTAH--LATGRK----------MLILTTLLQMMGHAGRPL 812
F G ++V V ++++ W V L AH + G + L +LQM+G AGRP
Sbjct: 686 FAQGYLRVLVSTATLAWGVNLPAHTVIIKGTETYSPESGAWVQLSPQDILQMLGRAGRPR 745
Query: 813 LDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYL 872
D + + +I+ +YY L + P+ES L H L DN NAEIVAG I ++ +++L
Sbjct: 746 YDKNGEGIIITSQDEVQYYLAILNQQLPIESQLIHKLVDNINAEIVAGSITTIEEGIEWL 805
Query: 873 TWTF---RLTQNPNYYNLQGV----SHRHLSDHLSELVENTISDLEATRSIIMEDDM-DL 924
T+T+ R+ Q+P Y ++ + L + ++L+ L + ++ + +
Sbjct: 806 TYTYFFVRMLQSPALYGVEATYDFTNDPTLYNRRADLIYTAFCILHENKLVVYNAALGSV 865
Query: 925 CPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRR 984
+ G IAS++YI+++TI + L +L V +++ E+ +P+R E + +
Sbjct: 866 ASTELGKIASHFYINFETINLYGKMLKPWHSETDILSVFSNSGEFKYVPVRQEERLEISK 925
Query: 985 LINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGN-LKLDQEKVLLSASRLLQAMVDV 1043
L+ +P K N LLQ S +EG L D + SA RLL+A+ ++
Sbjct: 926 LMEKCPIPIKEQP-NEPLAKINILLQTFISRLSLEGYALIADMIYITQSAGRLLRALYEI 984
Query: 1044 ISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQ 1076
W SLA + + +MV + +W ++S L Q
Sbjct: 985 ALLQKWSSLAKSILNLCKMVDKRLWLNNSPLRQ 1017
Score = 568 (205.0 bits), Expect = 3.6e-197, Sum P(4) = 3.6e-197
Identities = 110/197 (55%), Positives = 140/197 (71%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ + DR +VEDLF G+++VLVSTA LAWGVNLPAHTVIIKGT+ Y+PE GAW +LSP D
Sbjct: 674 LTKKDRGVVEDLFAQGYLRVLVSTATLAWGVNLPAHTVIIKGTETYSPESGAWVQLSPQD 733
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QMLGRAGRP+YD GEGIIIT E+QYYL+++NQQLPIESQ + KL + +NAEIV G
Sbjct: 734 ILQMLGRAGRPRYDKNGEGIIITSQDEVQYYLAILNQQLPIESQLIHKLVDNINAEIVAG 793
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPE---VLDITLGERITDLIHTAANVLDRN 177
++ +E W+ YTY + RML++P LYG+ D TL R DLI+TA +L N
Sbjct: 794 SITTIEEGIEWLTYTYFFVRMLQSPALYGVEATYDFTNDPTLYNRRADLIYTAFCILHEN 853
Query: 178 NLVKYGRKSGYFQSEKI 194
LV Y G S ++
Sbjct: 854 KLVVYNAALGSVASTEL 870
Score = 279 (103.3 bits), Expect = 3.6e-197, Sum P(4) = 3.6e-197
Identities = 58/112 (51%), Positives = 80/112 (71%)
Query: 195 KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSR 249
++E++KL+++ PIP+KE EP AKIN+LLQT+IS+L LEG +L +DM SAGRL R
Sbjct: 920 RLEISKLMEKCPIPIKEQPNEPLAKINILLQTFISRLSLEGYALIADMIYITQSAGRLLR 979
Query: 250 ALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGI-PNEILMKLE 300
AL+EI L + WS LA+ L L KMV KR+W +PLRQF + P++I+ E
Sbjct: 980 ALYEIALLQKWSSLAKSILNLCKMVDKRLWLNNSPLRQFGDVVPHQIIRASE 1031
Score = 178 (67.7 bits), Expect = 3.6e-197, Sum P(4) = 3.6e-197
Identities = 44/155 (28%), Positives = 81/155 (52%)
Query: 305 FLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTE 364
++ +PIT LR+++ + P++ W +HG E+F V +E DG+ +LH E F++K++
Sbjct: 1075 YMVQPITEQFLRIQVEVIPEWSWISAIHGSQEIFNVFLEGCDGNKLLHSEQFIVKRKNIN 1134
Query: 365 EDHSLNFTVPIYEPLPPQHLI--LPEKFPPPTELLDLQLLPVTALQ-NPSY--------- 412
+ H L F VP P P +++ + EK+ T + L V + + +P Y
Sbjct: 1135 KPHILEFFVPFVAPPLPNYILSFVSEKWVHCTWKSSILLSDVISPKVSPHYLDNNVDLVP 1194
Query: 413 -EALYQNYKL--FNPIQTQVFAVLYNTEDNVLVAA 444
E + + FN +Q+ F +YN+E+NV + +
Sbjct: 1195 TETVGDLFPFTHFNKLQSSTFDTVYNSENNVFIGS 1229
Score = 150 (57.9 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 45/181 (24%), Positives = 86/181 (47%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR +VE LF + VL T + + A+ V + GT+VY+ + + + D
Sbjct: 1490 MARVDRLIVERLFESKSIGVLFCTMDTSKFAPT-ANNVFVAGTRVYDGHEHRFLDYPLND 1548
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+ +M+G D G I T +++Y S +N L +ES + L E + G
Sbjct: 1549 LYEMVGCC----QDG-GVVHIYTTSQMVEFYSSFLNSGLAVESLLSNSLHEFFMDAVANG 1603
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++ + + + +T+ Y R+L+NP Y L EV + + +++LI + + ++ +
Sbjct: 1604 IIKQRQNCIDVLTFTFFYRRLLKNPSFYDLK-EVSNSGISTYLSELIESVFDDFNKEEFI 1662
Query: 181 K 181
+
Sbjct: 1663 E 1663
Score = 103 (41.3 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 34/107 (31%), Positives = 53/107 (49%)
Query: 198 LAKLLDRVPIPV-KESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEI-- 254
L KL ++PI ++ E P K +LLQ +IS++ + L D + L+R L +
Sbjct: 1728 LIKLQTKLPIKYSQDDYESPFFKAFILLQAHISRISIP-FDLRQDQKSV-LTRVLQILNA 1785
Query: 255 ---VLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMK 298
+L S A+ LS+M+ + +WS PLRQ NEIL +
Sbjct: 1786 AIDILSSDGSLNVLLAMDLSQMIVQAVWSSDNPLRQVPRFTNEILAR 1832
Score = 69 (29.3 bits), Expect = 9.3e-102, Sum P(2) = 9.3e-102
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 391 PPPTELL--DLQLLPVTALQNPSYEALYQNYKL-FNPIQTQVFAVLYNTEDNVLVAA 444
P P + L + +LLP++ L + + EA + FN IQ++++ + T++N+L+ A
Sbjct: 340 PAPAQSLSDNDELLPISTLPDWAQEAFPKTETTTFNRIQSKIYNQAFETDNNLLICA 396
Score = 39 (18.8 bits), Expect = 9.6e-73, Sum P(3) = 9.6e-73
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 990 RFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLD-QEKVLLSASRLLQAMVDVISSNG 1048
R+ NP + V N A + ++++ K+ Q V + L+ V+VI
Sbjct: 1039 RYFHLNPD--ELAVALNLKGNAQIAKQYIDSFPKVSIQYMVQPITEQFLRIQVEVIPEWS 1096
Query: 1049 WLSLALLAMEVSQMVTQG 1066
W+S + E+ + +G
Sbjct: 1097 WISAIHGSQEIFNVFLEG 1114
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 1145 (408.1 bits), Expect = 3.5e-190, Sum P(4) = 3.5e-190
Identities = 279/802 (34%), Positives = 443/802 (55%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYV--ELFWVIVEDNDGDYILHHEYFLLKKQYT-- 363
KPIT T+++VE+T+TP F W+D++HG + F++++E+ + + I+H E + K
Sbjct: 1040 KPITYTIVQVEVTLTPTFIWNDQIHGKSGQQSFYLVLENLNENLIIHQERIGIGKMKVNR 1099
Query: 364 EEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFN 423
+E +L FT+PI + + L + + D ++P++ L N ++++
Sbjct: 1100 QETQNLVFTIPIVDCQLTNNFQL--RLASEYFVTDDVVVPMS-LHNCILPKSFKSHTDLL 1156
Query: 424 PIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTIC 483
++ L N++ A+ F + A Q L APTGSGKT+C
Sbjct: 1157 DLEPLPIKTLKNSK----FEAIYNFDYFNPIQA-QVFFCLYKTDKSALIGAPTGSGKTLC 1211
Query: 484 AEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543
AE A+ R Q G M+ VYIAP+++L ++R DW++KF +G VVE++ + D
Sbjct: 1212 AELAMFRLLQ--DHPG-MKVVYIAPLKSLVRERVDDWKKKFEDGMGYRVVEVSGDVTPDP 1268
Query: 544 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRY 603
+ L I+I+TPEKWD +SR W R+YV++V L ++DE+HL+G G VLE IV+R++
Sbjct: 1269 EELAASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKM 1328
Query: 604 IA--SQV-ENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDIT 660
I S V E +R++ LST+LANA D+ EW+G +NF P VRPVP+ + IQG
Sbjct: 1329 ITRRSHVTEEPVRLLGLSTALANAGDVAEWLGIPDEACYNFRPSVRPVPISVHIQGFPGQ 1388
Query: 661 NFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLL 720
++ RM M KP Y AI+ ++ KP L+FV SR+ RLTA+ + D + K +L
Sbjct: 1389 HYCPRMGLMNKPAYKAILTYSPR-KPVLIFVSSRRQTRLTALAFVNLLIADHNPKQ-WLN 1446
Query: 721 CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMC 780
E+E ++ I++E L+ TL G+G H GL+ ++ +V LF KI+V + ++++
Sbjct: 1447 MDMLELEDLMAAIKDENLKLTLPFGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLA 1506
Query: 781 WEVPLTAHLAT--------GRKMLIL----TTLLQMMGHAGRPLLDNSEKCVILCHAPHK 828
W + AHL G+K + T +LQMMG AGRP D+S VI K
Sbjct: 1507 WGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVIYVQDAKK 1566
Query: 829 EYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYY 885
+YKKFLYE FPVES L L ++ NAEI AG I++KQ V+YL+ T+ RL NPNYY
Sbjct: 1567 TFYKKFLYEPFPVESSLLPVLPNHVNAEISAGTIDSKQAIVEYLSKTYLYRRLFANPNYY 1626
Query: 886 NLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLC-PSNYGMIASYYYISYKTIE 944
L+ S + ++++V++++++L A+ I ++ + D+ P+ G IAS YY+ ++T+
Sbjct: 1627 GLEEDSEEAMLKFITKIVDDSVAELLASECIHVDSEQDVIKPTPCGRIASVYYLQHETVR 1686
Query: 945 CFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVK 1004
SL S ++ +L++L EYA++P+R E+ + L R F+ K
Sbjct: 1687 FLVKSLHSGCSVENMLKILTDVPEYAEIPVRHNEDLINTELQKKLRIRFSTSVMGTSACK 1746
Query: 1005 ANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVT 1064
A+ L QAHF + + + D + VL R+LQAM ++ WLS + + + QM
Sbjct: 1747 AHLLFQAHFMRTVLPTDYRTDLKSVLDQCIRILQAMREMARLKNWLSATMNIILLQQMCH 1806
Query: 1065 QGMWEHDSMLLQLPHFTKDLAK 1086
W D LL LPH + + A+
Sbjct: 1807 SARWHDDHPLLCLPHLSHEDAR 1828
Score = 479 (173.7 bits), Expect = 3.5e-190, Sum P(4) = 3.5e-190
Identities = 91/191 (47%), Positives = 128/191 (67%)
Query: 3 RGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM 62
R DR L+E F +GHV VL TA LAWGVNLPAH V+IKGT V++ EKG +T+L LD+
Sbjct: 628 RQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEKGVFTDLGVLDVQ 687
Query: 63 QMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTV 122
Q+ GRAGRPQ+++ G GIIIT ++ YL+++ Q PIESQF ++L + LNAE+ LGTV
Sbjct: 688 QIFGRAGRPQFENEGHGIIITTRDKIDKYLTMLVHQNPIESQFYARLHDNLNAEVALGTV 747
Query: 123 QNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNNLV 180
E W+ YTY+YTR L+NP+ YG++ + D L + ++I AA LD+N ++
Sbjct: 748 STVDEGVEWLTYTYMYTRALKNPMAYGIAYNAIERDPNLRDHFGNVIREAAMQLDQNKMI 807
Query: 181 KYGRKSGYFQS 191
++ + Y S
Sbjct: 808 RFDMATEYLNS 818
Score = 343 (125.8 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 104/338 (30%), Positives = 164/338 (48%)
Query: 470 VLQLAPTGSGKTICAEFAILRN-HQRASETG-VMR----AVYIAPIEALAKQRYCDWERK 523
+L APTG+GKT A IL H+ + G +M+ +YIAP++ALA +
Sbjct: 330 LLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALATEM----TES 385
Query: 524 FGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRR-WKQRKYVQQVSLFI 579
FGK L G+ V ELT +T + + Q+++ TPEKWD ++R+ + V L I
Sbjct: 386 FGKRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLI 445
Query: 580 IDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GV 638
IDE+HL+ + GPV+E +VAR ++ IRIV LS +L N D+ ++ + + G+
Sbjct: 446 IDEVHLLHDERGPVIETLVARTLRQVEMSQSGIRIVGLSATLPNFIDVARFLRVNPYKGL 505
Query: 639 FNFPPGVRPVPLEIQIQGV-DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRK-Y 696
F F RPVPL + G NF + M Y ++ K LVFV +R
Sbjct: 506 FFFDGRFRPVPLTQKFIGTRKAGNFRDNLTLMDNVCYDEVVDFVKRGHQVLVFVHTRNGT 565
Query: 697 ARLTAVDLMIYSCKDSDQKSAFL---LCSAKEVEPH--VSIIQEE-MLRATLRLGVGYLH 750
A+L + Q FL S+K ++ ++I + + + G+G H
Sbjct: 566 AKLG--EAFCARASVLGQMDLFLPKDRASSKYIQADKAINICRNRAQISPLFQRGMGIHH 623
Query: 751 EGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH 788
GL + D+ ++ F G + V ++++ W V L AH
Sbjct: 624 AGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAH 661
Score = 327 (120.2 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 61/163 (37%), Positives = 99/163 (60%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R +VE LF + +QVL++TA LAWG+N PAH VI+KGT+ ++ +KG + + D++QM
Sbjct: 1483 ERAIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQM 1542
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ+D +I ++ +Y + + P+ES + L +NAEI GT+ +
Sbjct: 1543 MGRAGRPQFDDSAVAVIYVQDAKKTFYKKFLYEPFPVESSLLPVLPNHVNAEISAGTIDS 1602
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLI 167
+ ++ TYLY R+ NP YGL + + L + IT ++
Sbjct: 1603 KQAIVEYLSKTYLYRRLFANPNYYGLEEDSEEAML-KFITKIV 1644
Score = 230 (86.0 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 70/265 (26%), Positives = 122/265 (46%)
Query: 745 GVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT--GRKML-----I 797
G+G H GL + D+ ++ F G + V ++++ W V L AH G + +
Sbjct: 618 GMGIHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEKGV 677
Query: 798 LTTL-----LQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDN 852
T L Q+ G AGRP +N +I+ + Y L P+ES + LHDN
Sbjct: 678 FTDLGVLDVQQIFGRAGRPQFENEGHGIIITTRDKIDKYLTMLVHQNPIESQFYARLHDN 737
Query: 853 FNAEIVAGVIENKQDAVDYLTWTFRLTQ---NPNYYNLQ-GVSHR--HLSDHLSELVENT 906
NAE+ G + + V++LT+T+ T+ NP Y + R +L DH ++
Sbjct: 738 LNAEVALGTVSTVDEGVEWLTYTYMYTRALKNPMAYGIAYNAIERDPNLRDHFGNVIREA 797
Query: 907 ISDLEATRSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSS---------LTSKTKM 956
L+ + I + + L ++ G IAS +Y+ Y+TI+ + + TS
Sbjct: 798 AMQLDQNKMIRFDMATEYLNSTDLGRIASNFYVKYETIQLLNEAEKGVGLPVTFTSFMPD 857
Query: 957 KGLLEVLASASEYAQLPIRPGEEEL 981
++ +++ ++E+A L R EEE+
Sbjct: 858 DMVIGLISMSTEFANLKCR--EEEI 880
Score = 172 (65.6 bits), Expect = 3.5e-190, Sum P(4) = 3.5e-190
Identities = 43/98 (43%), Positives = 58/98 (59%)
Query: 213 LEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQLAEKA 267
L + K+NVLLQ+ IS+ +L S+ +AGRL RA+FE+VLK GWSQ A
Sbjct: 900 LASVAGKVNVLLQSLISRTSTRNSALMSEQLYVQQNAGRLCRAMFEMVLKNGWSQAANAF 959
Query: 268 LKLSKMVTKRMWSVQTPLRQFN---GIPNEILMKLEKK 302
L ++K V K+MW Q LRQF IP + K+E+K
Sbjct: 960 LGIAKCVEKQMWMNQCALRQFIQIINIPITWIEKIERK 997
Score = 141 (54.7 bits), Expect = 3.5e-190, Sum P(4) = 3.5e-190
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 1150 GEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRV--SLQR 1207
GE L++V+ER G+ ++ ++PK K+ GW +VV + + +L V S
Sbjct: 1917 GEVYKLRIVMERVGPGKNN-SSMHLPQWPKPKQAGWIIVVGNVSADMILNTTTVTGSHST 1975
Query: 1208 KSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDV 1248
+S AKLD AP G + + D Y+G DQEY+ +DV
Sbjct: 1976 RSTAKLDIRAPATKGNHELAVLILSDCYLGIDQEYTLRLDV 2016
Score = 133 (51.9 bits), Expect = 2.8e-44, Sum P(4) = 2.8e-44
Identities = 59/251 (23%), Positives = 111/251 (44%)
Query: 843 SHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQ-GVSHR--HLSDHL 899
+ LH L+ V+ V E + + Y R +NP Y + R +L DH
Sbjct: 732 ARLHDNLNAEVALGTVSTVDEGVE-WLTYTYMYTRALKNPMAYGIAYNAIERDPNLRDHF 790
Query: 900 SELVENTISDLEATRSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSS-------LT 951
++ L+ + I + + L ++ G IAS +Y+ Y+TI+ + + +T
Sbjct: 791 GNVIREAAMQLDQNKMIRFDMATEYLNSTDLGRIASNFYVKYETIQLLNEAEKGVGLPVT 850
Query: 952 SKTKMKG--LLEVLASASEYAQLPIRPGEEEL--VRRLINHQ-RFSFANPKCTDPHVKAN 1006
+ M ++ +++ ++E+A L R EEE+ + L+++ + K N
Sbjct: 851 FTSFMPDDMVIGLISMSTEFANLKCR--EEEIGDLEELMSYGCMMNVRGGGLASVAGKVN 908
Query: 1007 ALLQAHFSARHMEGN-LKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQ 1065
LLQ+ S + L +Q V +A RL +AM +++ NGW A + +++ V +
Sbjct: 909 VLLQSLISRTSTRNSALMSEQLYVQQNAGRLCRAMFEMVLKNGWSQAANAFLGIAKCVEK 968
Query: 1066 GMWEHDSMLLQ 1076
MW + L Q
Sbjct: 969 QMWMNQCALRQ 979
Score = 56 (24.8 bits), Expect = 2.4e-54, Sum P(4) = 2.4e-54
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
++ ++ N IQ+ VF Y T++N+L+ A
Sbjct: 306 FKGFEKLNVIQSIVFEQAYKTKENLLICA 334
Score = 40 (19.1 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 905 NTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSK-TKMKGLL-EV 962
NTI + + +R IM+DD + Y IA ++ + E F L K+K L +
Sbjct: 350 NTIHEHQNSRGDIMKDDFKII---Y--IAPMKALATEMTESFGKRLAPLGLKVKELTGDT 404
Query: 963 LASASEYAQ---LPIRPGEEELVRR 984
S +E A L + P + +++ R
Sbjct: 405 QLSRNEVADTQMLVLTPEKWDVITR 429
Score = 39 (18.8 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 246 RLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPL 285
R+ +A+ E+ + W + L +M W PL
Sbjct: 1777 RILQAMREMARLKNWLSATMNIILLQQMCHSARWHDDHPL 1816
Score = 38 (18.4 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 612 IRIVALSTSLANAKDLGEWIG 632
I ++++ST AN K E IG
Sbjct: 861 IGLISMSTEFANLKCREEEIG 881
Score = 37 (18.1 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 423 NPIQTQVFAVLY-NTEDNVLVAALS 446
NPI++Q +A L+ N V + +S
Sbjct: 724 NPIESQFYARLHDNLNAEVALGTVS 748
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 1193 (425.0 bits), Expect = 4.3e-179, Sum P(3) = 4.3e-179
Identities = 272/729 (37%), Positives = 418/729 (57%)
Query: 309 PITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHS 368
PIT V+RV + + PDF WDDK HG + FW+ VE++D ILH E F+L K+ H
Sbjct: 978 PITTNVMRVHVDLQPDFVWDDKYHGSAQFFWLTVEESDRSEILHVEKFILHKKQLHSPHE 1037
Query: 369 LNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQN---PSYEALYQNYKLFNPI 425
++F +P+ +PLP Q ++ + + + + Q+ PS E + + P+
Sbjct: 1038 MDFMIPLSDPLPAQVVVRVVS----DSWIGSETVHAVSFQHLIRPSNETIKTDLLHLQPL 1093
Query: 426 QTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNI-ILVLQLAPTGSGKTICA 484
L+N + + S K + P + + +L N V +PTGSGKT+ A
Sbjct: 1094 PV---TALHNPDVEQIY---SSKFKYFN-PMQTMVFHSLYNTNSSVFVGSPTGSGKTVVA 1146
Query: 485 EFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544
E AI H +E + VYIAP++AL ++R DW + K +VELT ++ ++
Sbjct: 1147 ELAIW--HA-FNEFPSSKVVYIAPMKALVRERVDDWRERICKNTSHRLVELTGDSLPTIQ 1203
Query: 545 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYI 604
+++ III+TPEK+D +SR W+ RK+VQQVSL I+DE+HL+ GP+LE+IV+RM YI
Sbjct: 1204 EVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIMDEIHLLASDRGPILEMIVSRMNYI 1263
Query: 605 ASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV-DITNFE 663
+SQ + IR++ +ST+++NA D+ W+G + G+FNFP VRPVPL++ I G + F
Sbjct: 1264 SSQTKKPIRLLGMSTAVSNAFDMAGWLGVKN-GLFNFPQSVRPVPLQMYIDGFPENLAFC 1322
Query: 664 ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSA 723
MK M KP + AI QH+ N KP L+FV SR+ RLTA+DL I+ C FL S
Sbjct: 1323 PLMKTMNKPAFMAIKQHSPN-KPVLIFVASRRQTRLTALDL-IHLCGMESNPRRFLKISD 1380
Query: 724 KEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEV 783
E++ + ++++ LR +L+ G+G H GL +SD+++ LFE GKI++ + +S++ W V
Sbjct: 1381 DELQDILENVKDDTLRLSLQFGMGLHHAGLVESDRQISHKLFEQGKIQILIATSTLAWGV 1440
Query: 784 PLTAHLAT--GRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYY 831
L AHL G + + LT +LQMMG AGRP D S ++ K +Y
Sbjct: 1441 NLPAHLVIIKGTQFFDAKIEAYRDMDLTDILQMMGRAGRPAYDTSGIAIVYTKESKKVFY 1500
Query: 832 KKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQ 888
K FL FPVES LH L ++ AEI AG I +Q+A+D+LTWTF R NP YY ++
Sbjct: 1501 KHFLNLGFPVESSLHKVLDNHIGAEISAGTITTRQEAMDFLTWTFLYRRAHNNPTYYGIE 1560
Query: 889 GVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSS 948
+S +S +L++L+++TI +L ++ + +L + + I+SYYY+S+ T+ F +
Sbjct: 1561 DISQYGISQYLAKLIDSTIENLVESKCVYTGGSDELHATPFLEISSYYYLSHLTMRNFVN 1620
Query: 949 SLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCT---DPHVKA 1005
++T + + L VL A+EY +L R GEE + + R+ + C DPHVKA
Sbjct: 1621 NVTPDFEFRDCLRVLCQATEYNELATRHGEELINMEMSQAMRYPAEDLNCEFIWDPHVKA 1680
Query: 1006 NALLQAHFS 1014
L+QA+ S
Sbjct: 1681 YLLIQAYMS 1689
Score = 471 (170.9 bits), Expect = 6.3e-93, Sum P(3) = 6.3e-93
Identities = 141/474 (29%), Positives = 225/474 (47%)
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEI 857
LT +LQMMG AGRP D S ++ K +YK FL FPVES LH L ++ AEI
Sbjct: 1467 LTDILQMMGRAGRPAYDTSGIAIVYTKESKKVFYKHFLNLGFPVESSLHKVLDNHIGAEI 1526
Query: 858 VAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATR 914
AG I +Q+A+D+LTWTF R NP YY ++ +S +S +L++L+++TI +L ++
Sbjct: 1527 SAGTITTRQEAMDFLTWTFLYRRAHNNPTYYGIEDISQYGISQYLAKLIDSTIENLVESK 1586
Query: 915 SIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPI 974
+ +L + + I+SYYY+S+ T+ F +++T + + L VL A+EY +L
Sbjct: 1587 CVYTGGSDELHATPFLEISSYYYLSHLTMRNFVNNVTPDFEFRDCLRVLCQATEYNELAT 1646
Query: 975 RPGEEELVRRLINHQRFSFANPKCT---DPHVKANALLQAHFSARHME-GNLKLDQEKVL 1030
R GEE + + R+ + C DPHVKA L+QA+ S + + D VL
Sbjct: 1647 RHGEELINMEMSQAMRYPAEDLNCEFIWDPHVKAYLLIQAYMSRVELPIADYAQDTISVL 1706
Query: 1031 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHF-------TKD 1083
A R+LQA +D + G+ + + +++ Q + Q W D + LP T
Sbjct: 1707 DQALRILQAYIDAAAELGYFKVVMSFIQLMQCIKQRYWYDDDPVSALPGLKLISEGKTNQ 1766
Query: 1084 LAKRCQE-NPGRSI----------ETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFP 1132
K+ PG+ E + +M+ Q + IA + P
Sbjct: 1767 TLKQLGSMKPGQLFGLAKKLGVKGENIENKETNYDYGDGDSDEMAKKQFVKIA---SHLP 1823
Query: 1133 NIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDA 1192
++ K Q+ ++++ VVL D VY +PK + E W++++ D
Sbjct: 1824 TGNLEIKQQEQDSIK---------VVLTHDNYPLNNDFKVYCPHFPKPQRESWFVILHDG 1874
Query: 1193 KTNQLL--AIKRVSLQRKSRAKLDFAAPVE-GGKKTYTLDFMCDSYMGCDQEYS 1243
+ LL A R+S +K D P + GK+ Y L+ + D G D YS
Sbjct: 1875 EELHLLKRASPRLS-NKKGIVACDLDIPDDLFGKELY-LECVND---GLDIAYS 1923
Score = 437 (158.9 bits), Expect = 4.3e-179, Sum P(3) = 4.3e-179
Identities = 89/191 (46%), Positives = 122/191 (63%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR L E +F G ++VL TA LAWGVNLPA VI+KGTQVY+ + G + +L D
Sbjct: 575 MLRSDRNLTEKMFESGAIKVLCCTATLAWGVNLPAAVVIVKGTQVYDSKAGGFVDLGISD 634
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++Q+ GRAGRPQY+ +G GI+ T +L +Y+SL+ QQ PIES+F KL + LNAEI LG
Sbjct: 635 VIQIFGRAGRPQYEKFGTGILCTTSDKLDHYVSLLTQQHPIESKFGDKLIDNLNAEISLG 694
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TV N +EA W+ YTY+ RM +NP YG+ + L D +L R +++ T A L
Sbjct: 695 TVTNVEEAVQWLGYTYMMVRMKQNPFAYGIDWKELQEDPSLTNRRREMVFTCAKRLHHLQ 754
Query: 179 LVKYGRKSGYF 189
++ + S F
Sbjct: 755 MIIFDENSEAF 765
Score = 375 (137.1 bits), Expect = 4.2e-30, P = 4.2e-30
Identities = 148/638 (23%), Positives = 278/638 (43%)
Query: 635 SHGVFNFPPGVRPVPLEIQIQGV-DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPS 693
S G+F F RPVPL+ QI GV + + + K +Y + + +VFV S
Sbjct: 453 SVGMFYFDQSFRPVPLQQQILGVRGKAGSKLARENIDKVSYEKLADYINQGLQVMVFVHS 512
Query: 694 RKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSII----QEEMLRATLRLGVGYL 749
RK TA I + + F A E + + + L+ G G
Sbjct: 513 RKDTVNTA-RTFIRMAVEYGESEIFNCSEADSYEKYKREASNKNRSKELKELFVHGFGVH 571
Query: 750 HEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL------------ATGRKMLI 797
H G+ +SD+ + +FE+G IKV ++++ W V L A + A G L
Sbjct: 572 HAGMLRSDRNLTEKMFESGAIKVLCCTATLAWGVNLPAAVVIVKGTQVYDSKAGGFVDLG 631
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHK-EYYKKFLYEAFPVESHLHHFLHDNFNAE 856
++ ++Q+ G AGRP + ILC K ++Y L + P+ES L DN NAE
Sbjct: 632 ISDVIQIFGRAGRPQYEKFGTG-ILCTTSDKLDHYVSLLTQQHPIESKFGDKLIDNLNAE 690
Query: 857 IVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRH---LSDHLSELVENTISDL 910
I G + N ++AV +L +T+ R+ QNP Y + + L++ E+V L
Sbjct: 691 ISLGTVTNVEEAVQWLGYTYMMVRMKQNPFAYGIDWKELQEDPSLTNRRREMVFTCAKRL 750
Query: 911 EATRSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEY 969
+ II +++ + P + G IAS +Y+ ++E F+ + +L +++ +SE+
Sbjct: 751 HHLQMIIFDENSEAFTPKDLGRIASDFYLLSNSVEIFNQMMNPLATEADILSMISMSSEF 810
Query: 970 AQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKL-DQEK 1028
+ R E + +++L+ P K N LLQA S H++ + + D
Sbjct: 811 DSIKFREEESKELKQLVEEDAPCQVAGDVDSPQGKTNILLQAFVSQAHIKDSALISDSNY 870
Query: 1029 VLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW--EHDSMLLQLPHFTKDLAK 1086
V +++R+ +++ + + W L + + + + + + +W EH +LP K
Sbjct: 871 VAQNSARICRSLFLIAMNRRWGKLMNIMLSLCKSIDKRIWAFEHPMTQFELPQPVLRNIK 930
Query: 1087 RCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQD-SEN 1145
+NP S+ + +M + + + +FP ID+ ++ + N
Sbjct: 931 A--KNP--SMLALRDMEAGELGDLVHNFKMGSI----LYKLIGKFPFIDIESEIFPITTN 982
Query: 1146 VRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSL 1205
V + V L+ D V+ ++Y + +WL V+++ +++L +++ L
Sbjct: 983 VMR------VHVDLQPDF--------VWDDKY-HGSAQFFWLTVEESDRSEILHVEKFIL 1027
Query: 1206 QRK---SRAKLDFAAPVEGGKKTYTL-DFMCDSYMGCD 1239
+K S ++DF P+ + + DS++G +
Sbjct: 1028 HKKQLHSPHEMDFMIPLSDPLPAQVVVRVVSDSWIGSE 1065
Score = 365 (133.5 bits), Expect = 9.5e-73, Sum P(2) = 9.5e-73
Identities = 114/383 (29%), Positives = 191/383 (49%)
Query: 413 EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQ 472
+ ++NYK N +Q+ V+ V YNT +N+LV A + + AL I+ +
Sbjct: 246 QGTFKNYKNLNKMQSLVYPVAYNTNENMLVCAPT---------GAGKTDVALLTILHTIN 296
Query: 473 LAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
T +T+ + + + + + VY+AP++ALA + + +K K LG+ V
Sbjct: 297 QFVT---ETVTEDGDVSVD----IDYDEFKIVYVAPLKALAAEIVEKYSKKL-KWLGINV 348
Query: 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGG 591
ELT + + + + QII++TPEKWD ++R+ + V +V L IIDE+HL+ G
Sbjct: 349 RELTGDMQLTRQEIINTQIIVTTPEKWDVVTRKSTGDSELVAKVKLLIIDEVHLLHEDRG 408
Query: 592 PVLEVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGAS-SHGVFNFPPGVRPVP 649
V+E +VAR +R + S ++ IR+V LS +L N D+ +++G + S G+F F RPVP
Sbjct: 409 SVIETLVARTLRQVES-TQSMIRVVGLSATLPNYMDVADFLGVNRSVGMFYFDQSFRPVP 467
Query: 650 LEIQIQGV-DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYS 708
L+ QI GV + + + K +Y + + +VFV SRK TA I
Sbjct: 468 LQQQILGVRGKAGSKLARENIDKVSYEKLADYINQGLQVMVFVHSRKDTVNTA-RTFIRM 526
Query: 709 CKDSDQKSAFLLCSAKEVEPHVSII----QEEMLRATLRLGVGYLHEGLNKSDQEVVSTL 764
+ + F A E + + + L+ G G H G+ +SD+ + +
Sbjct: 527 AVEYGESEIFNCSEADSYEKYKREASNKNRSKELKELFVHGFGVHHAGMLRSDRNLTEKM 586
Query: 765 FEAGKIKVCVMSSSMCWEVPLTA 787
FE+G IKV ++++ W V L A
Sbjct: 587 FESGAIKVLCCTATLAWGVNLPA 609
Score = 338 (124.0 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 68/172 (39%), Positives = 105/172 (61%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DRQ+ LF G +Q+L++T+ LAWGVNLPAH VIIKGTQ ++ + A+ ++ DI+QM
Sbjct: 1414 DRQISHKLFEQGKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEAYRDMDLTDILQM 1473
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRP YD+ G I+ T S+ +Y +N P+ES L + AEI GT+
Sbjct: 1474 MGRAGRPAYDTSGIAIVYTKESKKVFYKHFLNLGFPVESSLHKVLDNHIGAEISAGTITT 1533
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIH-TAANVLD 175
+EA +++ +T+LY R NP YG+ ++ + + + LI T N+++
Sbjct: 1534 RQEAMDFLTWTFLYRRAHNNPTYYGIE-DISQYGISQYLAKLIDSTIENLVE 1584
Score = 174 (66.3 bits), Expect = 4.3e-179, Sum P(3) = 4.3e-179
Identities = 39/121 (32%), Positives = 68/121 (56%)
Query: 189 FQSEKIKMELAKLLDR-VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----M 242
F+ E+ K EL +L++ P V ++ P K N+LLQ ++SQ ++ +L SD
Sbjct: 815 FREEESK-ELKQLVEEDAPCQVAGDVDSPQGKTNILLQAFVSQAHIKDSALISDSNYVAQ 873
Query: 243 SAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
++ R+ R+LF I + R W +L L L K + KR+W+ + P+ QF +P +L ++ K
Sbjct: 874 NSARICRSLFLIAMNRRWGKLMNIMLSLCKSIDKRIWAFEHPMTQFE-LPQPVLRNIKAK 932
Query: 303 D 303
+
Sbjct: 933 N 933
Score = 72 (30.4 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
Identities = 24/107 (22%), Positives = 50/107 (46%)
Query: 192 EKIKMELAKLLDRVPIPVK--ESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SA 244
E I ME+++ + R P E + +P K +L+Q Y+S+++L D A
Sbjct: 1651 ELINMEMSQAM-RYPAEDLNCEFIWDPHVKAYLLIQAYMSRVELPIADYAQDTISVLDQA 1709
Query: 245 GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGI 291
R+ +A + + G+ ++ ++L + + +R W P+ G+
Sbjct: 1710 LRILQAYIDAAAELGYFKVVMSFIQLMQCIKQRYWYDDDPVSALPGL 1756
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 1170 (416.9 bits), Expect = 1.9e-171, Sum P(3) = 1.9e-171
Identities = 261/704 (37%), Positives = 397/704 (56%)
Query: 309 PITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHS 368
PIT V+R+ + + PDF WD ++HG + FWV VE++D ILH E F+L ++ H
Sbjct: 1006 PITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNRRQLNNQHE 1065
Query: 369 LNFTVPIYEPLPPQHLILPEKFPPPTEL--LDLQLLPVTALQNPSYEALYQNYKLFNPIQ 426
++F +P+ +PLPPQ ++ K T + + L P E L P+
Sbjct: 1066 MDFMIPLSDPLPPQVVV---KVVSDTWIGCESTHAISFQHLIRPFNETLQTKLLKLRPLP 1122
Query: 427 TQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEF 486
T N L+ ++ F + T N + +PTGSGKTI AE
Sbjct: 1123 TSAL-------QNPLIESIYPFKYFNPMQTMTFYTLYNTNENAFVG-SPTGSGKTIVAEL 1174
Query: 487 AILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLL 546
AI H + G + VYIAP++AL ++R DW +K G VVELT ++ D K +
Sbjct: 1175 AIW--HAFKTFPG-KKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDV 1231
Query: 547 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIAS 606
I+I+TPEK+D +SR W+ RK+VQ VSL I+DE+HL+ GP+LE+IV+RM YI+S
Sbjct: 1232 HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASDRGPILEMIVSRMNYISS 1291
Query: 607 QVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV-DITNFEAR 665
Q + +R++ +ST+++NA D+ W+G HG++NFP VRPVPL++ I G D F
Sbjct: 1292 QTKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPL 1351
Query: 666 MKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL-LCSAK 724
MK M KP + AI QH+ +KPAL+FV SR+ RLTA+DL I+ C D FL + +
Sbjct: 1352 MKTMNKPVFMAIKQHSP-DKPALIFVASRRQTRLTALDL-IHLCGMEDNPRRFLNIDDEE 1409
Query: 725 EVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
E++ ++S + ++ L+ +L+ G+G H GL + D+ + LF+ KI++ + +S++ W V
Sbjct: 1410 ELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVN 1469
Query: 785 LTAHLAT------------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832
L AHL G + + LT +LQMMG AGRP D + ++ K +YK
Sbjct: 1470 LPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYK 1529
Query: 833 KFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQG 889
FL FPVES LH L D+ AEI +G I NKQ+A+D+L+WTF R NP YY ++
Sbjct: 1530 HFLNVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHNPTYYGIED 1589
Query: 890 -VSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSS 948
S +S+HLS L+++T+ +L ++ +++ D D+ + + I+SYYYIS+ TI
Sbjct: 1590 DTSTAGVSEHLSSLIDSTLENLRESQCVLLHGD-DIVATPFLSISSYYYISHLTIRQLLK 1648
Query: 949 SLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFS 992
+ + +L L+ A EY +LP+R GE + + R+S
Sbjct: 1649 QIHDHATFQEVLRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYS 1692
Score = 456 (165.6 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 108/299 (36%), Positives = 161/299 (53%)
Query: 792 GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
G + + LT +LQMMG AGRP D + ++ K +YK FL FPVES LH L D
Sbjct: 1489 GYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDD 1548
Query: 852 NFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQG-VSHRHLSDHLSELVENTI 907
+ AEI +G I NKQ+A+D+L+WTF R NP YY ++ S +S+HLS L+++T+
Sbjct: 1549 HLGAEITSGSITNKQEALDFLSWTFLFRRAHHNPTYYGIEDDTSTAGVSEHLSSLIDSTL 1608
Query: 908 SDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASAS 967
+L ++ +++ D D+ + + I+SYYYIS+ TI + + +L L+ A
Sbjct: 1609 ENLRESQCVLLHGD-DIVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLRWLSLAV 1667
Query: 968 EYAQLPIRPGEEELVRRLINHQRFS----FANP---KCTDPHVKANALLQAHFSARHME- 1019
EY +LP+R GE + + R+S F + DPHVK LLQAH S +
Sbjct: 1668 EYNELPVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPI 1727
Query: 1020 GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLP 1078
+ D VL + R+LQA +DV S G+ L +++ Q + QG W D + LP
Sbjct: 1728 ADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLP 1786
Score = 432 (157.1 bits), Expect = 1.9e-171, Sum P(3) = 1.9e-171
Identities = 107/269 (39%), Positives = 154/269 (57%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR L E +F DG ++VL TA LAWGVNLPA VIIKGTQVY+ +KG + +L D
Sbjct: 602 MARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISD 661
Query: 61 IMQMLGRAGRPQYDSY-GEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVL 119
++Q+ GR GRP + S G GI+ T + L +Y+SL+ QQ PIES+F SKL + LNAEI L
Sbjct: 662 VIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISL 721
Query: 120 GTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRN 177
G+V N EA W+ YTY++ RM +NP YG+ E + D L ER +I AA L
Sbjct: 722 GSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHAL 781
Query: 178 NLVKYGRKSGYFQSE---KIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLE 234
++ + S +F ++ ++ + L + V I + + + + +VL +S + +
Sbjct: 782 QMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEI-FNQMCDPRATEADVLSMISMSS-EFD 839
Query: 235 GLSLTSDMSAGRLSRALFEIVLKRGWSQL 263
G+ + S L R E V + SQL
Sbjct: 840 GIKFREEESK-ELKRLSDESVECQIGSQL 867
Score = 411 (149.7 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 122/436 (27%), Positives = 220/436 (50%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRAS----ETGV------MRAVYIAPIEALAKQRYCD 519
+L APTG+GKT A I+ ++ S E + + +Y+AP++ALA +
Sbjct: 306 MLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVDK 365
Query: 520 WERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLF 578
+ +K + V ELT + + + Q+I++TPEKWD ++R+ V +V L
Sbjct: 366 FSKKLAP-FNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLL 424
Query: 579 IIDELHLIGGQGGPVLEVIVAR-MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH- 636
IIDE+HL+ G V+E +VAR +R + S ++ IRI+ LS +L N D+ +++G +
Sbjct: 425 IIDEVHLLHEDRGSVIETLVARTLRQVESS-QSMIRIIGLSATLPNFMDVADFLGVNRQI 483
Query: 637 GVFNFPPGVRPVPLEIQIQGVDITNFEARMKA-MTKPTYTAIMQHAKNEKPALVFVPSRK 695
G+F F RP PLE Q+ G + K + K Y + + + +VFV SRK
Sbjct: 484 GMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRK 543
Query: 696 YARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQ--EEMLRATLRLGVGYLHEGL 753
+A + I + + + F ++ + S+++ ++ ++ + G G H G+
Sbjct: 544 ETVKSARNF-IKLAESNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGM 602
Query: 754 NKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTL 801
+SD+ + +F+ G IKV ++++ W V L A + G ++ L ++ +
Sbjct: 603 ARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDV 662
Query: 802 LQMMGHAGRPLLDNSEKCVILCHAPHK-EYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+Q+ G GRP ++ ILC + + ++Y + + P+ES L DN NAEI G
Sbjct: 663 IQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLG 722
Query: 861 VIENKQDAVDYLTWTF 876
+ N +A+++L +T+
Sbjct: 723 SVTNVDEAIEWLGYTY 738
Score = 343 (125.8 bits), Expect = 6.9e-33, Sum P(3) = 6.9e-33
Identities = 67/180 (37%), Positives = 107/180 (59%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR + LF +Q+L++T+ LAWGVNLPAH VIIKGTQ ++ + + ++ DI+QM
Sbjct: 1442 DRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQM 1501
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRP YD+ G I+ T S+ +Y +N P+ES L + L AEI G++ N
Sbjct: 1502 MGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGSITN 1561
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIH-TAANVLDRNNLVKYG 183
+EA +++ +T+L+ R NP YG+ + + E ++ LI T N+ + ++ +G
Sbjct: 1562 KQEALDFLSWTFLFRRAHHNPTYYGIEDDTSTAGVSEHLSSLIDSTLENLRESQCVLLHG 1621
Score = 247 (92.0 bits), Expect = 3.9e-18, Sum P(3) = 3.9e-18
Identities = 66/302 (21%), Positives = 144/302 (47%)
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHK-EYYKKFLYEAFPVESHLHHFLHDNFNAE 856
++ ++Q+ G GRP ++ ILC + + ++Y + + P+ES L DN NAE
Sbjct: 659 ISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAE 718
Query: 857 IVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQG---VSHRHLSDHLSELVENTISDL 910
I G + N +A+++L +T+ R+ +NP Y + + L + +++ L
Sbjct: 719 ISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRL 778
Query: 911 EATRSIIMED-DMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEY 969
A + I+ ++ M + G ++S +Y+ +++E F+ + +L +++ +SE+
Sbjct: 779 HALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEF 838
Query: 970 AQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFS-ARHMEGNLKLDQEK 1028
+ R E + ++RL + + P KAN LLQA+ S R + L D
Sbjct: 839 DGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDSNY 898
Query: 1029 VLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRC 1088
V ++ R+ +A+ + + W + + + + + + + +W D L Q +++ +R
Sbjct: 899 VAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDHPLCQFD-LPENIIRRI 957
Query: 1089 QE 1090
++
Sbjct: 958 RD 959
Score = 170 (64.9 bits), Expect = 7.9e-144, Sum P(3) = 7.9e-144
Identities = 42/117 (35%), Positives = 66/117 (56%)
Query: 189 FQSEKIKMELAKLLDR-VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----M 242
F+ E+ K EL +L D V + L+ P K NVLLQ YISQ ++ +L+SD
Sbjct: 843 FREEESK-ELKRLSDESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQ 901
Query: 243 SAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 299
++ R+ RALF I + R W + + L + K + KR+W+ PL QF+ +P I+ ++
Sbjct: 902 NSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDHPLCQFD-LPENIIRRI 957
Score = 132 (51.5 bits), Expect = 1.9e-171, Sum P(3) = 1.9e-171
Identities = 62/224 (27%), Positives = 101/224 (45%)
Query: 1000 DPHVKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAME 1058
DPHVK LLQAH S + + D VL + R+LQA +DV S G+ L ++
Sbjct: 1707 DPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIK 1766
Query: 1059 VSQMVTQGMWEHD---SML--LQLPH-----FTK----DLAKRCQENPGRSIETV--FXX 1102
+ Q + QG W D S+L LQL F++ ++ + ++ ++E + F
Sbjct: 1767 MMQCIKQGYWYEDDPVSVLPGLQLRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEIGRFGY 1826
Query: 1103 XXXXXXXXXXXXQMSDVQLLDIARF---CNRFPNIDMSYKVQDSENVRAGGEDTTLQVVL 1159
M++ + RF C R P ++ K ++ EN E T
Sbjct: 1827 KKLLNVFDQLTFGMTESEDTK-KRFVSVCQRLPVLE-GMKFEEQEN----NEVLTFY--- 1877
Query: 1160 ERDLGGRTELG-PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR 1202
+ L + G VY +++PK ++E W+L+ K ++LL IKR
Sbjct: 1878 SKHLSSKHNNGFEVYCDKFPKIQKELWFLI--GHKGDELLMIKR 1919
Score = 65 (27.9 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 17/83 (20%), Positives = 44/83 (53%)
Query: 1169 LGP--VYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRK---SRAKLDFAAPVEGG- 1222
LGP V+ +R + +W+ V+++ +Q+L ++ L R+ ++ ++DF P+
Sbjct: 1018 LGPDFVWDSRI-HGDAQFFWVFVEESDKSQILHFEKFILNRRQLNNQHEMDFMIPLSDPL 1076
Query: 1223 KKTYTLDFMCDSYMGCDQEYSFT 1245
+ + D+++GC+ ++ +
Sbjct: 1077 PPQVVVKVVSDTWIGCESTHAIS 1099
Score = 61 (26.5 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 419 YKLFNPIQTQVFAVLYNTEDNVLVAA 444
Y+ N IQ+ V+ V Y T +N+L+ A
Sbjct: 285 YETLNQIQSLVYPVAYKTNENMLICA 310
Score = 56 (24.8 bits), Expect = 8.1e-132, Sum P(3) = 8.1e-132
Identities = 34/168 (20%), Positives = 69/168 (41%)
Query: 136 YLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIK 195
YLYT++L+ L V +I L++ A + N L+ +G K
Sbjct: 264 YLYTKLLKISDLDHFCKTVFPYETLNQIQSLVYPVAYKTNENMLICAPTGAG-----KTD 318
Query: 196 MELAKLLDRVP-IPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEI 254
+ L +++ + V E + + Y++ LK + S +L+ ++
Sbjct: 319 IALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVDKFSK-KLAPFNIQV 377
Query: 255 VLKRGWSQLAEKALKLSKMV--TKRMWSVQTPLRQFNGIPNEILMKLE 300
G QL + + ++++ T W V T R+ NG N+++ K++
Sbjct: 378 RELTGDMQLTKAEILATQVIVTTPEKWDVVT--RKANG-DNDLVSKVK 422
Score = 49 (22.3 bits), Expect = 9.8e-26, Sum P(2) = 9.8e-26
Identities = 15/82 (18%), Positives = 35/82 (42%)
Query: 215 EPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQLAEKALK 269
+P K +LLQ ++S++ L D + R+ +A ++ + G+ +K
Sbjct: 1707 DPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIK 1766
Query: 270 LSKMVTKRMWSVQTPLRQFNGI 291
+ + + + W P+ G+
Sbjct: 1767 MMQCIKQGYWYEDDPVSVLPGL 1788
Score = 38 (18.4 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 347 GDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLIL 386
G+ I++ E + E + F +P+++P L+L
Sbjct: 1677 GEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLL 1716
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 1071 (382.1 bits), Expect = 8.1e-168, Sum P(3) = 8.1e-168
Identities = 238/599 (39%), Positives = 357/599 (59%)
Query: 309 PITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHS 368
P+ R VLR+ L ITPDF+W+D++HG E +++ V++++ I HHE+F+L ++ +DH
Sbjct: 1018 PLNRDVLRIRLFITPDFRWNDRLHGTSESYYIWVDNSETSEIYHHEFFILSRRKLYDDHE 1077
Query: 369 LNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTA--LQNPSYEALYQNYKLFNPIQ 426
LNFT+P+ +PLP Q + + L + PV+ L P E++Y + L N +Q
Sbjct: 1078 LNFTIPLSDPLPTQIYV---RAVSDRWLGAETVTPVSFQHLIRPDTESVYTD--LLN-LQ 1131
Query: 427 TQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIIL-VLQLAPTGSGKTICAE 485
L N +L +++ + P + +I L + VL +PTGSGKT+ AE
Sbjct: 1132 PLPIGALKNP---ILEHVYAQRFQYFN-PMQTQIFHTLYHTPANVLLGSPTGSGKTVAAE 1187
Query: 486 FAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL 545
A+ + E + VYIAP++AL ++R DW + + +G+ +VELT + D +
Sbjct: 1188 LAMWWAFR---ERPGSKVVYIAPMKALVRERVKDWGARLAQPMGLKLVELTGDNTPDTRT 1244
Query: 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIA 605
++ +II+TPEKWD +SR W+ R YV+QVSL IIDE+HL+ G GP+LE+IV+RM YIA
Sbjct: 1245 IKDADVIITTPEKWDGISRSWQTRGYVRQVSLVIIDEIHLLAGDRGPILEIIVSRMNYIA 1304
Query: 606 SQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV-DITNFEA 664
+ +N +R++ +ST+ ANA DLG W+G G+FNF VRPVPLE+ I G ++ F
Sbjct: 1305 ASTKNSVRLLGMSTACANATDLGNWLGVKE-GLFNFRHSVRPVPLELYIDGFPEVRGFCP 1363
Query: 665 RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAK 724
M++M +PT+ A+ H+ KP +VFVPSR+ RLTA DL I C D FL
Sbjct: 1364 LMQSMNRPTFLAVKNHSPT-KPVIVFVPSRRQTRLTAKDL-INMCGMEDNPRRFLNMDED 1421
Query: 725 EVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
+++ +++ ++++ L+ + G+G H GL +SD+++ LF KI++ V +S++ W V
Sbjct: 1422 DLQLNLTRVKDDALKEAISFGIGLHHAGLVESDRQLAEELFLNNKIQILVATSTLAWGVN 1481
Query: 785 LTAHLAT------------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832
L AHL G K + LT +LQM+G AGRP DNS I K++YK
Sbjct: 1482 LPAHLVVVKGTQFYDAKIEGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFTQDSKKDFYK 1541
Query: 833 KFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQ 888
FL+ FPVES LH L ++ AEI A I KQDA+DYLTWTF RL +NP+YY L+
Sbjct: 1542 HFLHTGFPVESSLHTVLDNHLCAEISAETIITKQDALDYLTWTFFFRRLHKNPSYYGLE 1600
Score = 492 (178.3 bits), Expect = 1.8e-97, Sum P(3) = 1.8e-97
Identities = 141/428 (32%), Positives = 216/428 (50%)
Query: 792 GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
G K + LT +LQM+G AGRP DNS I K++YK FL+ FPVES LH L +
Sbjct: 1501 GYKDMDLTDVLQMLGRAGRPQFDNSGVARIFTQDSKKDFYKHFLHTGFPVESSLHTVLDN 1560
Query: 852 NFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQG--------VSHRHLSDHLS 900
+ AEI A I KQDA+DYLTWTF RL +NP+YY L+ + + +D++
Sbjct: 1561 HLCAEISAETIITKQDALDYLTWTFFFRRLHKNPSYYGLEIPVEEQTSIAAQQAANDYII 1620
Query: 901 ELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLL 960
++++++ +L ++ + + + D+ P+ G I SYYY+S+KTI + + +L
Sbjct: 1621 SMIDSSLDELATSKCVEVYPNGDVDPTPLGKIMSYYYLSHKTIRSLVKNAKAGATFADVL 1680
Query: 961 EVLASASEYAQLPIRPGEEELVRRLINHQRFS---FANPKCTDPHVKANALLQAHFSARH 1017
+ A EY +LP+R E+ + L + F + DPHVKA LLQAH S
Sbjct: 1681 SWMCRAIEYDELPVRHNEDLINIELSKALPIATDLFGSLPMWDPHVKAFLLLQAHMSRIP 1740
Query: 1018 ME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQ 1076
+ + DQ VL A R++QA +DV++ G LS L +++ Q + W DS L
Sbjct: 1741 LPITDYVGDQTSVLDQAIRIIQASIDVLTELGHLSSCLEMIKLLQCIKSARWPTDSPLAI 1800
Query: 1077 LPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNI-D 1135
LP + + + N G S+ T+ + V +F + D
Sbjct: 1801 LPGLEPE-SLATKGNKG-SV-TLGKLASLPNKQLGSAIKELGVPASQQNKFQKAVSMLPD 1857
Query: 1136 MSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTN 1195
+S KV+D + A +L VVL R VY+ +YPK + EGW ++V D T+
Sbjct: 1858 LSVKVED---ITAA----SLSVVLRRANPLVDREARVYAPKYPKPQTEGWLVLVGDIATD 1910
Query: 1196 QLLAIKRV 1203
++A+KRV
Sbjct: 1911 DVVAVKRV 1918
Score = 439 (159.6 bits), Expect = 8.1e-168, Sum P(3) = 8.1e-168
Identities = 93/196 (47%), Positives = 126/196 (64%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR L+E LF +G ++VL TA LAWGVNLPA V+IKGTQVY+ ++G + +L LD
Sbjct: 612 MTRSDRNLMERLFAEGVLKVLCCTATLAWGVNLPAAAVVIKGTQVYSAQEGKFVDLGILD 671
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++Q+ GRAGRPQ++ G G+I T +L +YL+ + QLPIES+F SKL + LNAEI LG
Sbjct: 672 VLQIFGRAGRPQFEDTGIGMICTTADKLSHYLTAVTDQLPIESRFSSKLVDNLNAEIALG 731
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TV + EA WI Y+YLY RM +NP+ YG+S D L +R L AA L
Sbjct: 732 TVTSIPEAVQWIGYSYLYVRMRKNPMAYGISWAEFEEDPELVQRRRTLAIQAARTLQECQ 791
Query: 179 LVKYGRKSGYFQSEKI 194
+V + + +S+ I
Sbjct: 792 MVIFNETTEELRSKDI 807
Score = 409 (149.0 bits), Expect = 1.0e-33, P = 1.0e-33
Identities = 141/526 (26%), Positives = 247/526 (46%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVL--QL 473
++ Y+ N +Q+ V+ + Y T +N+LV A + + AA+ I+ + +
Sbjct: 286 FKGYQTLNRMQSLVYPIAYKTNENMLVCAPT---------GAGKTDAAMLTILHAIGQYV 336
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL---GM 530
P T +FA+ H T + VY+AP++ALA + K GK L G+
Sbjct: 337 TPNPLQNTTATDFAV---H-----TEDFKIVYVAPMKALA----AEITEKLGKRLAWLGI 384
Query: 531 CVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQ 589
E T + + + + QII++TPEKWD ++R+ + VQ+V L IIDE+H++ +
Sbjct: 385 RCREYTGDMHLTKTEIVQTQIIVTTPEKWDVVTRKGTGDTELVQKVRLLIIDEVHMLHDE 444
Query: 590 GGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASS-HGVFNFPPGVRPV 648
G VLE +VAR ++ IRIV LS +L N D+ +++ + G+F F RPV
Sbjct: 445 RGAVLESLVARTERQVESTQSLIRIVGLSATLPNFIDVADFLKVNRMQGLFYFDASFRPV 504
Query: 649 PLEIQIQGVD-ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDL--- 704
PLE GV + + + + + + + + + +VFV SR+ TA L
Sbjct: 505 PLEQHFIGVKGKAGTKQSRENLDEVAFDKVREMLEKDHQVMVFVHSRRDTLQTAKMLHER 564
Query: 705 -MIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVST 763
+ +C D S A + +E LR + G+G H G+ +SD+ ++
Sbjct: 565 AVDQACLDLFDPSMHPKYDAAIRDMKTCKARE--LRDLVPKGMGIHHAGMTRSDRNLMER 622
Query: 764 LFEAGKIKVCVMSSSMCWEV--PLTAHLATGRKM----------LILTTLLQMMGHAGRP 811
LF G +KV ++++ W V P A + G ++ L + +LQ+ G AGRP
Sbjct: 623 LFAEGVLKVLCCTATLAWGVNLPAAAVVIKGTQVYSAQEGKFVDLGILDVLQIFGRAGRP 682
Query: 812 LLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDY 871
+++ +I A +Y + + P+ES L DN NAEI G + + +AV +
Sbjct: 683 QFEDTGIGMICTTADKLSHYLTAVTDQLPIESRFSSKLVDNLNAEIALGTVTSIPEAVQW 742
Query: 872 LTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTIS-DLEATRSI 916
+ +++ + G+S + ELV+ + ++A R++
Sbjct: 743 IGYSYLYVRMRKNPMAYGISWAEFEED-PELVQRRRTLAIQAARTL 787
Score = 324 (119.1 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 63/154 (40%), Positives = 98/154 (63%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DRQL E+LF + +Q+LV+T+ LAWGVNLPAH V++KGTQ Y+ + + ++ D++QM
Sbjct: 1454 DRQLAEELFLNNKIQILVATSTLAWGVNLPAHLVVVKGTQFYDAKIEGYKDMDLTDVLQM 1513
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
LGRAGRPQ+D+ G I T S+ +Y ++ P+ES + L L AEI T+
Sbjct: 1514 LGRAGRPQFDNSGVARIFTQDSKKDFYKHFLHTGFPVESSLHTVLDNHLCAEISAETIIT 1573
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDIT 158
++A +++ +T+ + R+ +NP YGL V + T
Sbjct: 1574 KQDALDYLTWTFFFRRLHKNPSYYGLEIPVEEQT 1607
Score = 223 (83.6 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 80/316 (25%), Positives = 146/316 (46%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+LQ+ G AGRP +++ +I A +Y + + P+ES L DN NAEI G
Sbjct: 672 VLQIFGRAGRPQFEDTGIGMICTTADKLSHYLTAVTDQLPIESRFSSKLVDNLNAEIALG 731
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVEN--TISDLEATRS 915
+ + +AV ++ +++ R+ +NP Y G+S + ELV+ T++ ++A R+
Sbjct: 732 TVTSIPEAVQWIGYSYLYVRMRKNPMAY---GISWAEFEED-PELVQRRRTLA-IQAART 786
Query: 916 -------IIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
I E +L + G IAS YYI + +I+ F++ ++ +L+++A + E
Sbjct: 787 LQECQMVIFNETTEELRSKDIGRIASQYYILHTSIQVFNTMMSPYATEADVLKMIAMSGE 846
Query: 969 YAQLPIRPGE-EELVRRLINHQRFSFANPKCTD-PHVKANALLQAHFSARHMEG-NLKLD 1025
+ + R E +EL R + D P K N LLQA+ S E L D
Sbjct: 847 FDNIQSRDSEAKELTRMKDSRAAVPCDVAGGIDTPQAKTNILLQAYISKVQPEDFALGND 906
Query: 1026 QEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW--EHDSMLLQLPHFTKD 1083
V A R+ +A+ + + W L+ + +++ + + +W +H +LP K
Sbjct: 907 LNYVAQQAGRICRAIFMIALNRRWGHQCLVLLTLAKSIEKRVWPFQHPLHQFELP---KP 963
Query: 1084 LAKRCQENPGRSIETV 1099
+ + S+E +
Sbjct: 964 ILNQLDAKDSLSVEAM 979
Score = 194 (73.4 bits), Expect = 8.1e-168, Sum P(3) = 8.1e-168
Identities = 46/115 (40%), Positives = 66/115 (57%)
Query: 197 ELAKLLDR---VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLS 248
EL ++ D VP V ++ P AK N+LLQ YIS+++ E +L +D++ AGR+
Sbjct: 859 ELTRMKDSRAAVPCDVAGGIDTPQAKTNILLQAYISKVQPEDFALGNDLNYVAQQAGRIC 918
Query: 249 RALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
RA+F I L R W L L+K + KR+W Q PL QF +P IL +L+ KD
Sbjct: 919 RAIFMIALNRRWGHQCLVLLTLAKSIEKRVWPFQHPLHQFE-LPKPILNQLDAKD 972
Score = 83 (34.3 bits), Expect = 8.1e-39, Sum P(3) = 8.1e-39
Identities = 36/149 (24%), Positives = 64/149 (42%)
Query: 169 TAANVLD-RNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLE--EPSAKINVLLQ 225
T A+VL ++Y + I +EL+K L + + SL +P K +LLQ
Sbjct: 1675 TFADVLSWMCRAIEYDELPVRHNEDLINIELSKALP-IATDLFGSLPMWDPHVKAFLLLQ 1733
Query: 226 TYISQLKLEGLSLTSDMS-----AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWS 280
++S++ L D + A R+ +A +++ + G + +KL + + W
Sbjct: 1734 AHMSRIPLPITDYVGDQTSVLDQAIRIIQASIDVLTELGHLSSCLEMIKLLQCIKSARWP 1793
Query: 281 VQTPLRQFNGI-PNEILMKLEKKDFFLGK 308
+PL G+ P + K K LGK
Sbjct: 1794 TDSPLAILPGLEPESLATKGNKGSVTLGK 1822
Score = 45 (20.9 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 586 IGGQGGPVLEVIVARMRYIASQVENKIRIVAL 617
I G+ G L+VIV Y+ + I + AL
Sbjct: 1958 IAGREGRKLDVIVVSDAYLGLEYRTSIHVPAL 1989
Score = 40 (19.1 bits), Expect = 9.0e-126, Sum P(3) = 9.0e-126
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 162 RITDLIHTAANVLDRNNLVKYGRKSGYF 189
RI L T N +D + +K R G F
Sbjct: 468 RIVGLSATLPNFIDVADFLKVNRMQGLF 495
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 489 (177.2 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 98/179 (54%), Positives = 123/179 (68%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+KR DR+LVEDLF D H+QVLV T+ LAWG+NLPAHTVIIKGT VYN G + ELS +D
Sbjct: 1110 LKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSVYNINIGDFDELSSMD 1169
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QM+GR+GRPQYD G+ IIIT H LQ YLSL N+QL IES + + ++NAEIVL
Sbjct: 1170 VLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLFIESTLLHNIVNIINAEIVLK 1229
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLG-ERITDLIHTAANVLDRNN 178
+QN +A NW+E+TY+Y RML+ P LYG+ D G E D+I NN
Sbjct: 1230 NIQNMDDAMNWLEHTYMYIRMLKCPSLYGVIINSNDKIKGIEEFKDIIDMNNKTKKHNN 1288
Score = 386 (140.9 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 90/256 (35%), Positives = 143/256 (55%)
Query: 727 EPHV-SIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPL 785
E HV I ++MLR ++ G+ YLH + + ++++V LF+ I++ ++S + + +
Sbjct: 2287 EEHVFDYINDKMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNV 2346
Query: 786 TA-----------HLATGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833
A H ++ + +L+M+ +AGR D I + KEYYK
Sbjct: 2347 YANNVIILDTIITHFHNNKEEDYSIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKN 2406
Query: 834 FLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGV 890
F+YE VES++ L + N EIV IEN QDA+D+LTW+F R+ +NPNYY L+G+
Sbjct: 2407 FIYEPLTVESNIEDNLPNFLNNEIVMSTIENYQDAIDWLTWSFFYRRIKKNPNYYGLKGI 2466
Query: 891 SHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTIECFSSS 949
S+ H+SD+LSEL+EN + L I I E MD+ P N G+I+S+Y + Y I F+
Sbjct: 2467 SNEHISDYLSELIENNMEILSFANCINIEEQTMDIKPCNLGIISSFYNLDYHIIHFFNQY 2526
Query: 950 LTS-KTKMKG-LLEVL 963
+ S KT K + E++
Sbjct: 2527 VLSLKTLKKSRIFEII 2542
Score = 349 (127.9 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 92/269 (34%), Positives = 143/269 (53%)
Query: 986 INHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVIS 1045
IN +F + P H+KA LLQAH + N + + VLL A +L+ +++DVIS
Sbjct: 2613 INLLQF-MSVPMYFTSHLKAFILLQAHIHRYSLPLNYIQETKTVLLKAYKLINSLIDVIS 2671
Query: 1046 SNGWLSLALLAMEVSQMVTQGMWEHD-SMLLQLPHFTKDLAKRCQENPGRSIETVFXXXX 1104
SN L+ L MEVSQM+TQ M D S L QLPHF + L K+ N ++
Sbjct: 2672 SNNILNFCLFVMEVSQMLTQSMKSTDQSNLYQLPHFDEHLIKKA--NDLEILDVYDLINA 2729
Query: 1105 XXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLG 1164
+++ Q +IA CN FP I++ Y++ ++ + E L + +ERDL
Sbjct: 2730 EDEPRDILLKHLNEKQRSEIANVCNIFPIIEVQYEIDLDKSYKVN-EIAQLNLTIERDL- 2787
Query: 1165 GRTELGPVYSNR-Y-PKAKEEGWWLVVDDAKTNQLLAIKRVSLQRK-SRAKLDFAAPVEG 1221
T+ ++++ Y P KEE WW+V+ K N LL+IK++SL + + K++F P +
Sbjct: 2788 --TDDAVIFAHSLYLPFEKEEMWWIVIGIKKMNLLLSIKKLSLLKSVNNIKINFELPDKP 2845
Query: 1222 GKKTYTLDFMCDSYMGCDQEYSFTVDVKE 1250
+ + D Y+GCDQEY F ++V+E
Sbjct: 2846 NTYDVVIYVINDCYVGCDQEYEFKINVEE 2874
Score = 298 (110.0 bits), Expect = 4.7e-69, Sum P(5) = 4.7e-69
Identities = 96/298 (32%), Positives = 148/298 (49%)
Query: 611 KIRIVALSTSLANAKDLGEWIGAS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAM 669
KIR+V LS +L N +D+G ++ A G+F F RPV +E G+ + M
Sbjct: 966 KIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEKKGIKKYALM 1025
Query: 670 TKPTYTAIMQHA-KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728
+ TY +++ A KN+ L+FV SRK T+ L+I SD S FL+ E
Sbjct: 1026 NELTYEKVLEEAGKNQ--ILIFVHSRKETYRTS-KLLIDRFMKSDNLSKFLIDKKISSEI 1082
Query: 729 HVS----IIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
+S +I EE L+ L G G H GL + D+++V LF I+V V +S++ W +
Sbjct: 1083 LLSEKEHVINEE-LKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGIN 1141
Query: 785 LTAH--LATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832
L AH + G + L +LQM+G +GRP D S K +I+ + + Y
Sbjct: 1142 LPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYL 1201
Query: 833 KFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
E +ES L H + + NAEIV I+N DA+++L T+ R+ + P+ Y +
Sbjct: 1202 SLNNEQLFIESTLLHNIVNIINAEIVLKNIQNMDDAMNWLEHTYMYIRMLKCPSLYGV 1259
Score = 271 (100.5 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 70/239 (29%), Positives = 132/239 (55%)
Query: 384 LILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYK---LFNPIQTQVFAVLYNTEDNV 440
LILP + T+LLDLQ LP+ +++ + N + FN I TQ+F+ ++ NV
Sbjct: 1710 LILPSQNFYSTQLLDLQPLPIHSIKYDKAHTFFNNIRNLHYFNSIHTQIFSSIFENNGNV 1769
Query: 441 LVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA----- 495
L+A+ + K +PA+ + L + T K + I+ + + A
Sbjct: 1770 LIASSNSKHYL--IPAELGMIKILKFLHCFYNFINTYIKKEKDV-YKIINDKKLADLLYN 1826
Query: 496 -SETGVMRAVYIAPIEALAKQRYCDWER-KFGKELGMCVVELTVETAMDLKLLEKGQIII 553
+ +++ VYIAP++ + + + +W+ K +L MC+ LT + +D+KLL+ II+
Sbjct: 1827 NNLIDLIKIVYIAPLDDVIIKTFKNWQAMKKTFDLKMCI--LTGDIQIDMKLLQTHHIIL 1884
Query: 554 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVE-NK 611
S P +D +S++W+++K +Q VS +I D + L+ G ++E++++R+RYI++Q+ NK
Sbjct: 1885 SNPSNYDNISKKWRRKKILQTVSFYIFDHMELLDTVQGGIMEILISRIRYISTQLNINK 1943
Score = 242 (90.2 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 56/142 (39%), Positives = 86/142 (60%)
Query: 185 KSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-- 242
K+ + + E+ K EL+ +++++PIPVKES+ P KIN+LLQ Y+S + L G + +DM
Sbjct: 1423 KNIFIRDEE-KTELSIIMEKLPIPVKESINIPYTKINILLQLYLSNIILNGYIINADMVY 1481
Query: 243 ---SAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 299
+A R+ R+ FEI LK+ L + LK KM+ +RMWS TPLRQF + E++ +
Sbjct: 1482 IHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRMWSTMTPLRQFGLLSTELIRII 1541
Query: 300 EKKDFFLGKPITRTVLRVELTI 321
EKK+ +T L +TI
Sbjct: 1542 EKKNITFKNYLTMN-LNEYITI 1562
Score = 220 (82.5 bits), Expect = 9.2e-90, Sum P(5) = 9.2e-90
Identities = 54/142 (38%), Positives = 83/142 (58%)
Query: 470 VLQLAPTGSGKTICAEFAILR--NHQRASETGVMRA----VYIAPIEALAKQRYCDWERK 523
+L APTGSGKT A IL N R + + R VYI+P++AL ++ + +
Sbjct: 734 MLICAPTGSGKTNIALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLR 793
Query: 524 FGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 583
K + + V ELT + + K L+ QII+ TPEK+D +SR+W ++ + ++ L I DE+
Sbjct: 794 L-KCMNIKVSELTGDVNLSTKELDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEI 852
Query: 584 HLIGGQGGPVLEVIVARM-RYI 604
HL+ G VLE I+AR+ RY+
Sbjct: 853 HLLNEMRGNVLESIIARINRYM 874
Score = 210 (79.0 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 47/176 (26%), Positives = 96/176 (54%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
++++VE LF +Q+L+ + + + +N+ A+ VII T + + + S +I++M
Sbjct: 2318 EKKIVEILFDKKTIQILIVSYDYIYSLNVYANNVIILDTIITHFHNNKEEDYSIQNILEM 2377
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+ AGR D+ I T ++ +YY + + + L +ES L LN EIV+ T++N
Sbjct: 2378 ISYAGRQNEDTKAFVYIYTYITKKEYYKNFIYEPLTVESNIEDNLPNFLNNEIVMSTIEN 2437
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +W+ +++ Y R+ +NP YGL + + + + +++LI +L N +
Sbjct: 2438 YQDAIDWLTWSFFYRRIKKNPNYYGLKG-ISNEHISDYLSELIENNMEILSFANCI 2492
Score = 151 (58.2 bits), Expect = 7.4e-152, Sum P(7) = 7.4e-152
Identities = 30/68 (44%), Positives = 41/68 (60%)
Query: 298 KLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFL 357
KLE + +PI +L+V+L I PDF ++ K HGY LFWV V D + ILH++ F
Sbjct: 1581 KLELNAYI--QPINHKILKVDLNIAPDFIYNPKYHGYFMLFWVFVFDISNESILHYDLFT 1638
Query: 358 LKKQYTEE 365
LKK Y +
Sbjct: 1639 LKKNYKND 1646
Score = 148 (57.2 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 35/106 (33%), Positives = 58/106 (54%)
Query: 613 RIVALST-SLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTK 671
RI+ LS+ SL N+KD EWIG + +NF VR +P+EI + V+I N + R +M +
Sbjct: 2023 RILCLSSCSLYNSKDFAEWIGCKKNDYYNFLSTVRDIPIEIYLHAVNIMNKQNRYISMQR 2082
Query: 672 PTYTAIMQ-----HAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
Y I + K + ++FV +K + A+DL++ + D+
Sbjct: 2083 QVYQNIRKLKNIPKKKKMQNVIIFVTDQKLCKTLALDLILSAYNDN 2128
Score = 148 (57.2 bits), Expect = 3.6e-49, Sum P(4) = 3.6e-49
Identities = 54/239 (22%), Positives = 103/239 (43%)
Query: 850 HDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISD 909
++N N I G N + +DY++ L N Y R + + ++ +
Sbjct: 1309 NNNNNNNINGGNNNNSNNVMDYMSI---LKTNYKYNKFMEKIKRRMYN----ILYSCFLI 1361
Query: 910 LEATRSIIMEDDMDLCPSNY-GMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
LE I ++ S Y G I+SYYY+ YK+I+ ++ L T LL++ ++E
Sbjct: 1362 LEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYKSIDIYNKKLNKYTNEIDLLKIFTMSNE 1421
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNL-KLDQE 1027
+ + IR EE+ +I + P+ K N LLQ + S + G + D
Sbjct: 1422 FKNIFIRD-EEKTELSIIMEKLPIPVKESINIPYTKINILLQLYLSNIILNGYIINADMV 1480
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAK 1086
+ +A R+ ++ ++ +L L ++ +M+ + MW + L Q + +L +
Sbjct: 1481 YIHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRMWSTMTPLRQFGLLSTELIR 1539
Score = 63 (27.2 bits), Expect = 9.2e-90, Sum P(5) = 9.2e-90
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 398 DLQLLPVTALQNPSYEALY-QNYKLFNPIQTQVFAVLYNT-EDNVLVAA 444
+++L+ + L ++E N NPIQ++V+ V +N E+N+L+ A
Sbjct: 690 EIKLIHINELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEENMLICA 738
Score = 57 (25.1 bits), Expect = 7.4e-152, Sum P(7) = 7.4e-152
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 172 NVLDRNNLVKYGRKSGYFQSEKIKMELAKLL-DRVPIPVKESLEEPSAKINVLLQTYISQ 230
NV+D +++K K F EKIK + +L I K L + + K+N + TYI +
Sbjct: 1326 NVMDYMSILKTNYKYNKFM-EKIKRRMYNILYSCFLILEKYDLIKYNKKLNTVSSTYIGK 1384
Query: 231 L 231
+
Sbjct: 1385 I 1385
Score = 45 (20.9 bits), Expect = 1.3e-150, Sum P(7) = 1.3e-150
Identities = 14/64 (21%), Positives = 35/64 (54%)
Query: 162 RITDLIHTAANVLDRNNLVKYGRKSGYFQSEKI-KMELAKLLDRVPIPV-KESLEEPSAK 219
R+ +++++ +L++ +L+KY +K S I K+ +D I + + L + + +
Sbjct: 1350 RMYNILYSCFLILEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYKSIDIYNKKLNKYTNE 1409
Query: 220 INVL 223
I++L
Sbjct: 1410 IDLL 1413
Score = 42 (19.8 bits), Expect = 7.1e-60, Sum P(3) = 7.1e-60
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRW--KQRKYVQQV-SLFIIDEL 583
E ++ A DL++L+ +I + E D L + KQR + V ++F I E+
Sbjct: 2709 EHLIKKANDLEILDVYDLINAEDEPRDILLKHLNEKQRSEIANVCNIFPIIEV 2761
Score = 39 (18.8 bits), Expect = 4.7e-69, Sum P(5) = 4.7e-69
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 925 CPSNYGMIASYYYISYKTIECFSS--SLTSKTK 955
CPS YG+I + K IE F + +KTK
Sbjct: 1253 CPSLYGVIINSND-KIKGIEEFKDIIDMNNKTK 1284
Score = 38 (18.4 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 103 SQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRN 144
S + + ++ N +I L +ACN ++ TY + ++ N
Sbjct: 2545 SNIFNDILKIHNYDIFL--CLKIAQACNNVQVTYEFLKLSIN 2584
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 489 (177.2 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 98/179 (54%), Positives = 123/179 (68%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+KR DR+LVEDLF D H+QVLV T+ LAWG+NLPAHTVIIKGT VYN G + ELS +D
Sbjct: 1110 LKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSVYNINIGDFDELSSMD 1169
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QM+GR+GRPQYD G+ IIIT H LQ YLSL N+QL IES + + ++NAEIVL
Sbjct: 1170 VLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLFIESTLLHNIVNIINAEIVLK 1229
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLG-ERITDLIHTAANVLDRNN 178
+QN +A NW+E+TY+Y RML+ P LYG+ D G E D+I NN
Sbjct: 1230 NIQNMDDAMNWLEHTYMYIRMLKCPSLYGVIINSNDKIKGIEEFKDIIDMNNKTKKHNN 1288
Score = 386 (140.9 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 90/256 (35%), Positives = 143/256 (55%)
Query: 727 EPHV-SIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPL 785
E HV I ++MLR ++ G+ YLH + + ++++V LF+ I++ ++S + + +
Sbjct: 2287 EEHVFDYINDKMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNV 2346
Query: 786 TA-----------HLATGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833
A H ++ + +L+M+ +AGR D I + KEYYK
Sbjct: 2347 YANNVIILDTIITHFHNNKEEDYSIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKN 2406
Query: 834 FLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGV 890
F+YE VES++ L + N EIV IEN QDA+D+LTW+F R+ +NPNYY L+G+
Sbjct: 2407 FIYEPLTVESNIEDNLPNFLNNEIVMSTIENYQDAIDWLTWSFFYRRIKKNPNYYGLKGI 2466
Query: 891 SHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTIECFSSS 949
S+ H+SD+LSEL+EN + L I I E MD+ P N G+I+S+Y + Y I F+
Sbjct: 2467 SNEHISDYLSELIENNMEILSFANCINIEEQTMDIKPCNLGIISSFYNLDYHIIHFFNQY 2526
Query: 950 LTS-KTKMKG-LLEVL 963
+ S KT K + E++
Sbjct: 2527 VLSLKTLKKSRIFEII 2542
Score = 349 (127.9 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 92/269 (34%), Positives = 143/269 (53%)
Query: 986 INHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVIS 1045
IN +F + P H+KA LLQAH + N + + VLL A +L+ +++DVIS
Sbjct: 2613 INLLQF-MSVPMYFTSHLKAFILLQAHIHRYSLPLNYIQETKTVLLKAYKLINSLIDVIS 2671
Query: 1046 SNGWLSLALLAMEVSQMVTQGMWEHD-SMLLQLPHFTKDLAKRCQENPGRSIETVFXXXX 1104
SN L+ L MEVSQM+TQ M D S L QLPHF + L K+ N ++
Sbjct: 2672 SNNILNFCLFVMEVSQMLTQSMKSTDQSNLYQLPHFDEHLIKKA--NDLEILDVYDLINA 2729
Query: 1105 XXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLG 1164
+++ Q +IA CN FP I++ Y++ ++ + E L + +ERDL
Sbjct: 2730 EDEPRDILLKHLNEKQRSEIANVCNIFPIIEVQYEIDLDKSYKVN-EIAQLNLTIERDL- 2787
Query: 1165 GRTELGPVYSNR-Y-PKAKEEGWWLVVDDAKTNQLLAIKRVSLQRK-SRAKLDFAAPVEG 1221
T+ ++++ Y P KEE WW+V+ K N LL+IK++SL + + K++F P +
Sbjct: 2788 --TDDAVIFAHSLYLPFEKEEMWWIVIGIKKMNLLLSIKKLSLLKSVNNIKINFELPDKP 2845
Query: 1222 GKKTYTLDFMCDSYMGCDQEYSFTVDVKE 1250
+ + D Y+GCDQEY F ++V+E
Sbjct: 2846 NTYDVVIYVINDCYVGCDQEYEFKINVEE 2874
Score = 298 (110.0 bits), Expect = 4.7e-69, Sum P(5) = 4.7e-69
Identities = 96/298 (32%), Positives = 148/298 (49%)
Query: 611 KIRIVALSTSLANAKDLGEWIGAS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAM 669
KIR+V LS +L N +D+G ++ A G+F F RPV +E G+ + M
Sbjct: 966 KIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEKKGIKKYALM 1025
Query: 670 TKPTYTAIMQHA-KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728
+ TY +++ A KN+ L+FV SRK T+ L+I SD S FL+ E
Sbjct: 1026 NELTYEKVLEEAGKNQ--ILIFVHSRKETYRTS-KLLIDRFMKSDNLSKFLIDKKISSEI 1082
Query: 729 HVS----IIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
+S +I EE L+ L G G H GL + D+++V LF I+V V +S++ W +
Sbjct: 1083 LLSEKEHVINEE-LKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGIN 1141
Query: 785 LTAH--LATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832
L AH + G + L +LQM+G +GRP D S K +I+ + + Y
Sbjct: 1142 LPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYL 1201
Query: 833 KFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
E +ES L H + + NAEIV I+N DA+++L T+ R+ + P+ Y +
Sbjct: 1202 SLNNEQLFIESTLLHNIVNIINAEIVLKNIQNMDDAMNWLEHTYMYIRMLKCPSLYGV 1259
Score = 271 (100.5 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 70/239 (29%), Positives = 132/239 (55%)
Query: 384 LILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYK---LFNPIQTQVFAVLYNTEDNV 440
LILP + T+LLDLQ LP+ +++ + N + FN I TQ+F+ ++ NV
Sbjct: 1710 LILPSQNFYSTQLLDLQPLPIHSIKYDKAHTFFNNIRNLHYFNSIHTQIFSSIFENNGNV 1769
Query: 441 LVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA----- 495
L+A+ + K +PA+ + L + T K + I+ + + A
Sbjct: 1770 LIASSNSKHYL--IPAELGMIKILKFLHCFYNFINTYIKKEKDV-YKIINDKKLADLLYN 1826
Query: 496 -SETGVMRAVYIAPIEALAKQRYCDWER-KFGKELGMCVVELTVETAMDLKLLEKGQIII 553
+ +++ VYIAP++ + + + +W+ K +L MC+ LT + +D+KLL+ II+
Sbjct: 1827 NNLIDLIKIVYIAPLDDVIIKTFKNWQAMKKTFDLKMCI--LTGDIQIDMKLLQTHHIIL 1884
Query: 554 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVE-NK 611
S P +D +S++W+++K +Q VS +I D + L+ G ++E++++R+RYI++Q+ NK
Sbjct: 1885 SNPSNYDNISKKWRRKKILQTVSFYIFDHMELLDTVQGGIMEILISRIRYISTQLNINK 1943
Score = 242 (90.2 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 56/142 (39%), Positives = 86/142 (60%)
Query: 185 KSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-- 242
K+ + + E+ K EL+ +++++PIPVKES+ P KIN+LLQ Y+S + L G + +DM
Sbjct: 1423 KNIFIRDEE-KTELSIIMEKLPIPVKESINIPYTKINILLQLYLSNIILNGYIINADMVY 1481
Query: 243 ---SAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 299
+A R+ R+ FEI LK+ L + LK KM+ +RMWS TPLRQF + E++ +
Sbjct: 1482 IHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRMWSTMTPLRQFGLLSTELIRII 1541
Query: 300 EKKDFFLGKPITRTVLRVELTI 321
EKK+ +T L +TI
Sbjct: 1542 EKKNITFKNYLTMN-LNEYITI 1562
Score = 220 (82.5 bits), Expect = 9.2e-90, Sum P(5) = 9.2e-90
Identities = 54/142 (38%), Positives = 83/142 (58%)
Query: 470 VLQLAPTGSGKTICAEFAILR--NHQRASETGVMRA----VYIAPIEALAKQRYCDWERK 523
+L APTGSGKT A IL N R + + R VYI+P++AL ++ + +
Sbjct: 734 MLICAPTGSGKTNIALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLR 793
Query: 524 FGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 583
K + + V ELT + + K L+ QII+ TPEK+D +SR+W ++ + ++ L I DE+
Sbjct: 794 L-KCMNIKVSELTGDVNLSTKELDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEI 852
Query: 584 HLIGGQGGPVLEVIVARM-RYI 604
HL+ G VLE I+AR+ RY+
Sbjct: 853 HLLNEMRGNVLESIIARINRYM 874
Score = 210 (79.0 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 47/176 (26%), Positives = 96/176 (54%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
++++VE LF +Q+L+ + + + +N+ A+ VII T + + + S +I++M
Sbjct: 2318 EKKIVEILFDKKTIQILIVSYDYIYSLNVYANNVIILDTIITHFHNNKEEDYSIQNILEM 2377
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+ AGR D+ I T ++ +YY + + + L +ES L LN EIV+ T++N
Sbjct: 2378 ISYAGRQNEDTKAFVYIYTYITKKEYYKNFIYEPLTVESNIEDNLPNFLNNEIVMSTIEN 2437
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +W+ +++ Y R+ +NP YGL + + + + +++LI +L N +
Sbjct: 2438 YQDAIDWLTWSFFYRRIKKNPNYYGLKG-ISNEHISDYLSELIENNMEILSFANCI 2492
Score = 151 (58.2 bits), Expect = 7.4e-152, Sum P(7) = 7.4e-152
Identities = 30/68 (44%), Positives = 41/68 (60%)
Query: 298 KLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFL 357
KLE + +PI +L+V+L I PDF ++ K HGY LFWV V D + ILH++ F
Sbjct: 1581 KLELNAYI--QPINHKILKVDLNIAPDFIYNPKYHGYFMLFWVFVFDISNESILHYDLFT 1638
Query: 358 LKKQYTEE 365
LKK Y +
Sbjct: 1639 LKKNYKND 1646
Score = 148 (57.2 bits), Expect = 2.4e-160, Sum P(6) = 2.4e-160
Identities = 35/106 (33%), Positives = 58/106 (54%)
Query: 613 RIVALST-SLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTK 671
RI+ LS+ SL N+KD EWIG + +NF VR +P+EI + V+I N + R +M +
Sbjct: 2023 RILCLSSCSLYNSKDFAEWIGCKKNDYYNFLSTVRDIPIEIYLHAVNIMNKQNRYISMQR 2082
Query: 672 PTYTAIMQ-----HAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
Y I + K + ++FV +K + A+DL++ + D+
Sbjct: 2083 QVYQNIRKLKNIPKKKKMQNVIIFVTDQKLCKTLALDLILSAYNDN 2128
Score = 148 (57.2 bits), Expect = 3.6e-49, Sum P(4) = 3.6e-49
Identities = 54/239 (22%), Positives = 103/239 (43%)
Query: 850 HDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISD 909
++N N I G N + +DY++ L N Y R + + ++ +
Sbjct: 1309 NNNNNNNINGGNNNNSNNVMDYMSI---LKTNYKYNKFMEKIKRRMYN----ILYSCFLI 1361
Query: 910 LEATRSIIMEDDMDLCPSNY-GMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE 968
LE I ++ S Y G I+SYYY+ YK+I+ ++ L T LL++ ++E
Sbjct: 1362 LEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYKSIDIYNKKLNKYTNEIDLLKIFTMSNE 1421
Query: 969 YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNL-KLDQE 1027
+ + IR EE+ +I + P+ K N LLQ + S + G + D
Sbjct: 1422 FKNIFIRD-EEKTELSIIMEKLPIPVKESINIPYTKINILLQLYLSNIILNGYIINADMV 1480
Query: 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAK 1086
+ +A R+ ++ ++ +L L ++ +M+ + MW + L Q + +L +
Sbjct: 1481 YIHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRMWSTMTPLRQFGLLSTELIR 1539
Score = 63 (27.2 bits), Expect = 9.2e-90, Sum P(5) = 9.2e-90
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 398 DLQLLPVTALQNPSYEALY-QNYKLFNPIQTQVFAVLYNT-EDNVLVAA 444
+++L+ + L ++E N NPIQ++V+ V +N E+N+L+ A
Sbjct: 690 EIKLIHINELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEENMLICA 738
Score = 57 (25.1 bits), Expect = 7.4e-152, Sum P(7) = 7.4e-152
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 172 NVLDRNNLVKYGRKSGYFQSEKIKMELAKLL-DRVPIPVKESLEEPSAKINVLLQTYISQ 230
NV+D +++K K F EKIK + +L I K L + + K+N + TYI +
Sbjct: 1326 NVMDYMSILKTNYKYNKFM-EKIKRRMYNILYSCFLILEKYDLIKYNKKLNTVSSTYIGK 1384
Query: 231 L 231
+
Sbjct: 1385 I 1385
Score = 45 (20.9 bits), Expect = 1.3e-150, Sum P(7) = 1.3e-150
Identities = 14/64 (21%), Positives = 35/64 (54%)
Query: 162 RITDLIHTAANVLDRNNLVKYGRKSGYFQSEKI-KMELAKLLDRVPIPV-KESLEEPSAK 219
R+ +++++ +L++ +L+KY +K S I K+ +D I + + L + + +
Sbjct: 1350 RMYNILYSCFLILEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYKSIDIYNKKLNKYTNE 1409
Query: 220 INVL 223
I++L
Sbjct: 1410 IDLL 1413
Score = 42 (19.8 bits), Expect = 7.1e-60, Sum P(3) = 7.1e-60
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRW--KQRKYVQQV-SLFIIDEL 583
E ++ A DL++L+ +I + E D L + KQR + V ++F I E+
Sbjct: 2709 EHLIKKANDLEILDVYDLINAEDEPRDILLKHLNEKQRSEIANVCNIFPIIEV 2761
Score = 39 (18.8 bits), Expect = 4.7e-69, Sum P(5) = 4.7e-69
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 925 CPSNYGMIASYYYISYKTIECFSS--SLTSKTK 955
CPS YG+I + K IE F + +KTK
Sbjct: 1253 CPSLYGVIINSND-KIKGIEEFKDIIDMNNKTK 1284
Score = 38 (18.4 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 103 SQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRN 144
S + + ++ N +I L +ACN ++ TY + ++ N
Sbjct: 2545 SNIFNDILKIHNYDIFL--CLKIAQACNNVQVTYEFLKLSIN 2584
>UNIPROTKB|B4E0P5 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
Length = 595
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 305/594 (51%), Positives = 409/594 (68%)
Query: 601 MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDIT 660
MRYI+SQ+E IRIVALS+SL+NAKD+ W+G S+ FNF P VRPVPLE+ IQG +I+
Sbjct: 1 MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNIS 60
Query: 661 NFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLL 720
+ + R+ +M KP Y AI +H+ +KP +VFVPSRK RLTA+D++ +C Q+ FL
Sbjct: 61 HTQTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILT-TCAADIQRQRFLH 118
Query: 721 CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMC 780
C+ K++ P++ + + L+ TL GVGYLHEGL+ ++ +V LF +G I+V V S S+C
Sbjct: 119 CTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLC 178
Query: 781 WEVPLTAHLA--------TGRKMLILT----TLLQMMGHAGRPLLDNSEKCVILCHAPHK 828
W + + AHL G+ + +LQM+GHA RPL D+ +CVI+C K
Sbjct: 179 WGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKK 238
Query: 829 EYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYY 885
+++KKFLYE PVESHL H +HD+FNAEIV IENKQDAVDYLTWTF R+TQNPNYY
Sbjct: 239 DFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYY 298
Query: 886 NLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIEC 945
NLQG+SHRHLSDHLSELVE T+SDLE ++ I +ED+MD+ P N GMIA+YYYI+Y TIE
Sbjct: 299 NLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIEL 358
Query: 946 FSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKA 1005
FS SL +KTK++GL+E++++A+EY +PIR E+ L+R+L NPK DPHVK
Sbjct: 359 FSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKT 418
Query: 1006 NALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQ 1065
N LLQAH S + L+ D E++L A RL+QA VDV+SSNGWLS AL AME++QMVTQ
Sbjct: 419 NLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQ 478
Query: 1066 GMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIA 1125
MW DS L QLPHFT + KRC + + +E+VF Q++D Q+ D+A
Sbjct: 479 AMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADVA 535
Query: 1126 RFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPK 1179
RFCNR+PNI++SY+V D +++R+GG L V LER+ GPV + +P+
Sbjct: 536 RFCNRYPNIELSYEVVDKDSIRSGGPVVVL-VQLERE---EEVTGPVIAPLFPQ 585
Score = 297 (109.6 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 59/176 (33%), Positives = 105/176 (59%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+LVE LF G +QV+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM
Sbjct: 155 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQM 214
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+G A RP D G +I+ S+ ++ + + LP+ES + + NAEIV T++N
Sbjct: 215 VGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIEN 274
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +++ +T+LY RM +NP Y L + L + +++L+ + L+++ +
Sbjct: 275 KQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHLSELVEQTLSDLEQSKCI 329
Score = 125 (49.1 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 198 LAKLLDRVPIPVKE-SLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRAL 251
L +L +VP + +P K N+LLQ ++S+++L L SD A RL +A
Sbjct: 395 LRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQAC 453
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+++ GW A A++L++MVT+ MWS + L+Q +E + + K
Sbjct: 454 VDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDK 504
Score = 46 (21.3 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 330 KVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLN 370
KV G +E+ E + I HHE LL++ + H LN
Sbjct: 368 KVRGLIEIISNAAE-YENIPIRHHEDNLLRQLAQKVPHKLN 407
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 1082 (385.9 bits), Expect = 1.8e-151, Sum P(3) = 1.8e-151
Identities = 241/621 (38%), Positives = 361/621 (58%)
Query: 309 PITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHS 368
P+ R VLRV L + P+F W+D+ HG E +W+ VE+++ I HHEYF+L ++ +DH
Sbjct: 997 PLNRDVLRVRLMLYPEFTWNDRHHGASESYWIWVENSETSEIYHHEYFILSRKKLYDDHE 1056
Query: 369 LNFTVPIYEPLPPQHLI--LPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQ 426
LNFT+P+ +PLP Q + + +++ + + L P E++Y + P+
Sbjct: 1057 LNFTIPLSDPLPNQIYVRAISDRWLGAETVTPISF---QHLIRPDTESVYTDLLELQPLP 1113
Query: 427 TQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIIL-VLQLAPTGSGKTICAE 485
+ L N +L ++ + P + ++ L + VL +PTGSGKT+ AE
Sbjct: 1114 ---ISALKNP---ILEELYGQRFQYFN-PMQTQLFHVLYHTAANVLLGSPTGSGKTVAAE 1166
Query: 486 FAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL 545
A+ + E + VYIAP++AL ++R DW R+ +G+ +VELT + D +
Sbjct: 1167 LAMWWAFR---ERPGSKVVYIAPMKALVRERVMDWGRRLTAPMGLKLVELTGDNTPDTRT 1223
Query: 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIA 605
+ III+TPEKWD +SR W+ R YV++VSL IIDE+HL+GG GP+LE+IV+RM YIA
Sbjct: 1224 IRDADIIITTPEKWDGISRSWQTRDYVRKVSLVIIDEIHLLGGDRGPILEIIVSRMNYIA 1283
Query: 606 SQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV-DITNFEA 664
SQ + +R++ +ST+ ANA DL W+G G++NF VRPVPLEI I G + F
Sbjct: 1284 SQSKGSVRLMGMSTACANASDLANWLGVKE-GLYNFRHSVRPVPLEIYIDGFPEQRGFCP 1342
Query: 665 RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAK 724
M++M +PT+ AI H+ EKP +VFV SR+ RLTA DL+ + C D F+ S
Sbjct: 1343 LMQSMNRPTFLAIKNHSP-EKPVIVFVASRRQTRLTAKDLINF-CGMEDNPRRFVRMSED 1400
Query: 725 EVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
+++ ++ ++++ LR L G+G H GL +SD+++ LF KI++ V +S++ W V
Sbjct: 1401 DLQLNLERVKDDALREALSFGIGLHHAGLVESDRQLAEELFANNKIQILVATSTLAWGVN 1460
Query: 785 LTAHLAT------------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832
L AHL G K + LT +LQM+G AGRP D+S I K +YK
Sbjct: 1461 LPAHLVVVKGTQFFDAKTEGYKDMDLTDVLQMLGRAGRPQFDSSGIARIFTQDSKKAFYK 1520
Query: 833 KFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQG 889
FL+ FPVES LH L ++ AE+ AG I KQDA+DYLTWTF RL +NP+YY L+
Sbjct: 1521 HFLHTGFPVESTLHKVLDNHLGAEVSAGTIATKQDALDYLTWTFFFRRLHKNPSYYGLEI 1580
Query: 890 VSHRHLSDHLSELVENTISDL 910
+ +H S L ++ + DL
Sbjct: 1581 SADQHNSLEAQTLAQDFMIDL 1601
Score = 492 (178.3 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 202/853 (23%), Positives = 381/853 (44%)
Query: 400 QLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQR 459
+L+P++++ + ++ YK N +Q+ ++ V Y T +N+L+ A + +
Sbjct: 265 KLVPISSMDGLC-QGTFKGYKTLNRMQSLLYDVAYKTSENMLICAPT---------GAGK 314
Query: 460 ITAALPNIILVL--QLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRY 517
AA+ I+ + P + + EF++L + + VY+AP++ALA
Sbjct: 315 TDAAMLTILNAVGKNTVPNPAEQPGATEFSVLVDD--------FKIVYVAPMKALA---- 362
Query: 518 CDWERKFGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQ 573
+ K GK L G+ V ELT + + + + + QII++TPEKWD ++R+ + VQ
Sbjct: 363 AEVTEKLGKRLAWLGIKVRELTGDMQLTKREIVETQIIVTTPEKWDVVTRKSTGDTELVQ 422
Query: 574 QVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGA 633
+V L IIDE+H++ + G V+E +VAR + ++ IRIV LS +L N D+ +++
Sbjct: 423 KVRLLIIDEVHMLHDERGAVIESLVARTQRQVESTQSLIRIVGLSATLPNYVDVADFLKV 482
Query: 634 SSH-GVFNFPPGVRPVPLEIQIQGVDITNFEARMKA-MTKPTYTAIMQHAKNEKPALVFV 691
+ G+F F RPVPLE GV + + + T+ + + +VFV
Sbjct: 483 NKMAGLFFFDSSFRPVPLEQHFIGVKGKPGSKQSRDNIDTVTFEKVRDMLERGHQVMVFV 542
Query: 692 PSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE------EMLRATLRLG 745
SRK LTA L + +D + L S E E + + +++ LR G
Sbjct: 543 HSRKDTVLTARMLKQMAVQDGCEA----LFSCHEHENYSNALRDMKHARARELRDLFASG 598
Query: 746 VGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKM-LILTTLLQM 804
G H G+++SD+ ++ G V + ++++ + + G+ + L + +LQ+
Sbjct: 599 FGTHHAGMSRSDRNLMEPTLAWG---VNLPAAAVVIKGTQLYNPQEGKFVDLGILDVLQI 655
Query: 805 MGHAGRPLLDNSEKCVILCHAPHK-EYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIE 863
G AGRP ++ +C K +Y + P+ES L DN NAEI G +
Sbjct: 656 FGRAGRPQFQDTG-IGFICTTHDKLNHYLSAVTSQQPIESRFSSRLVDNLNAEIALGTVT 714
Query: 864 NKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSD------HLSELVENTISDLEATR 914
+ + V +L +++ R+ + P Y G+ + L D +L+ L+ ++
Sbjct: 715 SISEGVQWLGYSYLFVRMKREPRNY---GIDYTELIDDPGLVLRRRQLIIQAALVLQKSQ 771
Query: 915 SIIM-EDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLP 973
II E +L + G IAS YY+ +IE F+ + ++ +L +++ + E+ +
Sbjct: 772 MIIYNEKTEELRAKDVGRIASQYYVLQTSIEIFNELMRPRSGEADVLRMISMSGEFDNIQ 831
Query: 974 IRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLS 1032
R E + + RL + K N LLQ++ S +E L D V +
Sbjct: 832 SRENESKELTRLREEAVQTEVEGGNDSAQAKTNILLQSYISRAKIEDFALVSDTGYVAQN 891
Query: 1033 ASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQEN- 1091
A+R+ +A+ + + W + + + + + + MW D Q + + + +E
Sbjct: 892 AARICRALFMIALNRRWGYQCQVLLSMCKSIEKQMWPFDHPFRQFD-LPQPILRNLEEKL 950
Query: 1092 PGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGE 1151
P S+E++ +M +A+ + FP + + ++
Sbjct: 951 PTSSVESMRDMETAELGQLVHNHKMGKT----LAKLLDNFPTLSVEAEIAP--------- 997
Query: 1152 DTTLQVVLERD-LGGRTELGPVYS-NRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKS 1209
L RD L R L P ++ N E +W+ V++++T+++ + L RK
Sbjct: 998 -------LNRDVLRVRLMLYPEFTWNDRHHGASESYWIWVENSETSEIYHHEYFILSRKK 1050
Query: 1210 RA---KLDFAAPV 1219
+L+F P+
Sbjct: 1051 LYDDHELNFTIPL 1063
Score = 423 (154.0 bits), Expect = 1.7e-72, Sum P(3) = 1.7e-72
Identities = 106/303 (34%), Positives = 161/303 (53%)
Query: 792 GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
G K + LT +LQM+G AGRP D+S I K +YK FL+ FPVES LH L +
Sbjct: 1480 GYKDMDLTDVLQMLGRAGRPQFDSSGIARIFTQDSKKAFYKHFLHTGFPVESTLHKVLDN 1539
Query: 852 NFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLS--------DHLS 900
+ AE+ AG I KQDA+DYLTWTF RL +NP+YY L+ + +H S D +
Sbjct: 1540 HLGAEVSAGTIATKQDALDYLTWTFFFRRLHKNPSYYGLEISADQHNSLEAQTLAQDFMI 1599
Query: 901 ELVENTISDLEATRSIIMEDDM-DLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGL 959
+LV+ ++S+L + II + ++ P+ +G I SYYY+++KTI S +
Sbjct: 1600 DLVDKSLSELSESSCIIFDSATGEVDPTPFGKIMSYYYLAHKTIRYLLSHAKPAPSFHDV 1659
Query: 960 LEVLASASEYAQLPIRPGEEELVRRLINHQRFS---FANPKCTDPHVKANALLQAHFSAR 1016
L + SA+E+ +LP+R E+ + L + + + DPHVKA LLQA+ S
Sbjct: 1660 LSWMCSATEFDELPVRHNEDLINAELSRNLPLAVDPMGDLPMWDPHVKAFLLLQAYMSRI 1719
Query: 1017 HME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLL 1075
+ + DQ VL + R++QA +D ++ G+ + + + Q + W D L
Sbjct: 1720 DLPISDYVGDQTSVLDQSIRIIQASIDAMAELGYTAACRTFITLLQCIKSARWPTDHPLS 1779
Query: 1076 QLP 1078
LP
Sbjct: 1780 ILP 1782
Score = 394 (143.8 bits), Expect = 1.8e-151, Sum P(3) = 1.8e-151
Identities = 88/205 (42%), Positives = 123/205 (60%)
Query: 1 MKRGDRQLVEDLFCDG----HVQVLVSTANL-----AWGVNLPAHTVIIKGTQVYNPEKG 51
MK + + DLF G H + S NL AWGVNLPA V+IKGTQ+YNP++G
Sbjct: 583 MKHARARELRDLFASGFGTHHAGMSRSDRNLMEPTLAWGVNLPAAAVVIKGTQLYNPQEG 642
Query: 52 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAE 111
+ +L LD++Q+ GRAGRPQ+ G G I T H +L +YLS + Q PIES+F S+L +
Sbjct: 643 KFVDLGILDVLQIFGRAGRPQFQDTGIGFICTTHDKLNHYLSAVTSQQPIESRFSSRLVD 702
Query: 112 LLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLS-PEVLDIT-LGERITDLIHT 169
LNAEI LGTV + E W+ Y+YL+ RM R P YG+ E++D L R LI
Sbjct: 703 NLNAEIALGTVTSISEGVQWLGYSYLFVRMKREPRNYGIDYTELIDDPGLVLRRRQLIIQ 762
Query: 170 AANVLDRNNLVKYGRKSGYFQSEKI 194
AA VL ++ ++ Y K+ +++ +
Sbjct: 763 AALVLQKSQMIIYNEKTEELRAKDV 787
Score = 337 (123.7 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 88/302 (29%), Positives = 151/302 (50%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DRQL E+LF + +Q+LV+T+ LAWGVNLPAH V++KGTQ ++ + + ++ D++QM
Sbjct: 1433 DRQLAEELFANNKIQILVATSTLAWGVNLPAHLVVVKGTQFFDAKTEGYKDMDLTDVLQM 1492
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
LGRAGRPQ+DS G I T S+ +Y ++ P+ES L L AE+ GT+
Sbjct: 1493 LGRAGRPQFDSSGIARIFTQDSKKAFYKHFLHTGFPVESTLHKVLDNHLGAEVSAGTIAT 1552
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEV-----LDI-TLGER-ITDLIHTAANVLDRN 177
++A +++ +T+ + R+ +NP YGL L+ TL + + DL+ + + L +
Sbjct: 1553 KQDALDYLTWTFFFRRLHKNPSYYGLEISADQHNSLEAQTLAQDFMIDLVDKSLSELSES 1612
Query: 178 NLVKYGRKSGYFQSEKI-KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGL 236
+ + + +G K+ L I S +P+ + +L S + + L
Sbjct: 1613 SCIIFDSATGEVDPTPFGKIMSYYYLAHKTIRYLLSHAKPAPSFHDVLSWMCSATEFDEL 1672
Query: 237 SL--TSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNE 294
+ D+ LSR L V G + + +K ++ M + P+ + G
Sbjct: 1673 PVRHNEDLINAELSRNLPLAVDPMGDLPMWDPHVKAFLLLQAYMSRIDLPISDYVGDQTS 1732
Query: 295 IL 296
+L
Sbjct: 1733 VL 1734
Score = 188 (71.2 bits), Expect = 4.7e-132, Sum P(4) = 4.7e-132
Identities = 52/156 (33%), Positives = 78/156 (50%)
Query: 154 VLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQS-EKIKMELAKLLDR-VPIPVKE 211
VL ++ E +L+ + D ++ + QS E EL +L + V V+
Sbjct: 796 VLQTSI-EIFNELMRPRSGEADVLRMISMSGEFDNIQSRENESKELTRLREEAVQTEVEG 854
Query: 212 SLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MSAGRLSRALFEIVLKRGWSQLAEK 266
+ AK N+LLQ+YIS+ K+E +L SD +A R+ RALF I L R W +
Sbjct: 855 GNDSAQAKTNILLQSYISRAKIEDFALVSDTGYVAQNAARICRALFMIALNRRWGYQCQV 914
Query: 267 ALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
L + K + K+MW P RQF+ +P IL LE+K
Sbjct: 915 LLSMCKSIEKQMWPFDHPFRQFD-LPQPILRNLEEK 949
Score = 73 (30.8 bits), Expect = 1.8e-151, Sum P(3) = 1.8e-151
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 1172 VYSNRYPKAKEEGWWLVV----DDAKTNQLLAIKRVS 1204
+Y+ R+PK + EG++L+V D + LLA+KRVS
Sbjct: 1869 IYAPRFPKPQTEGFFLLVCASKSDGQDGDLLALKRVS 1905
Score = 46 (21.3 bits), Expect = 1.1e-35, Sum P(4) = 1.1e-35
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 142 LRNPVL---YGLSPEVLDITLGERITDLIHTAANVL 174
L+NP+L YG + + + L HTAANVL
Sbjct: 1117 LKNPILEELYGQRFQYFNPMQTQLFHVLYHTAANVL 1152
Score = 44 (20.5 bits), Expect = 4.7e-132, Sum P(4) = 4.7e-132
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 94 LMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEA 128
+MN IESQ++++LA + A L +N A
Sbjct: 1 MMNGTESIESQWLAQLAAMRQAIADLNLTKNPANA 35
Score = 38 (18.4 bits), Expect = 7.2e-35, Sum P(4) = 7.2e-35
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALS 563
+LT + +DL L E + + WD +S
Sbjct: 36 QLTYGSDLDLDLDENSSSAGTVDDVWDLIS 65
Score = 37 (18.1 bits), Expect = 3.3e-116, Sum P(4) = 3.3e-116
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 162 RITDLIHTAANVLDRNNLVKYGRKSGYF 189
RI L T N +D + +K + +G F
Sbjct: 462 RIVGLSATLPNYVDVADFLKVNKMAGLF 489
Score = 37 (18.1 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 636 HGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKP 672
HG PG +P + Q T++ R+ A++ P
Sbjct: 1810 HGAITTLPGKLHLPASLHSQFTKATSYLPRL-AVSVP 1845
>UNIPROTKB|F1SU36 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GeneTree:ENSGT00640000091272 EMBL:CU896688
Ensembl:ENSSSCT00000008906 OMA:QSSKKEF Uniprot:F1SU36
Length = 553
Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
Identities = 289/553 (52%), Positives = 384/553 (69%)
Query: 714 QKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVC 773
++S FL C+ K++ P++ + + L+ TL GVGYLHEGL+ ++ +V LF +G I+V
Sbjct: 2 RRSRFLHCTEKDLIPYLEKLGDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVV 61
Query: 774 VMSSSMCWEVPLTAHLA--------TGRKMLILT----TLLQMMGHAGRPLLDNSEKCVI 821
V S S+CW + + AHL G+ + +LQM+G A RPL D+ +CVI
Sbjct: 62 VASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGRANRPLQDDEGRCVI 121
Query: 822 LCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RL 878
+C K+++KKFLYE PVESHL H +HD+FNAEIV IENKQDAVDYLTWTF R+
Sbjct: 122 MCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRM 181
Query: 879 TQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYI 938
TQNPNYYNLQG+SHRHLSDHLSELVE T+SDLE ++ I +ED+MD+ P N GMIA+YYYI
Sbjct: 182 TQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYI 241
Query: 939 SYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKC 998
+Y TIE FS SL +KTK++GL+E++++A+EY +PIR E+ L+R+L NPK
Sbjct: 242 NYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKF 301
Query: 999 TDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAME 1058
DPHVK N LLQAH S + L+ D E++L A RL+QA VDV+SSNGWLS AL AME
Sbjct: 302 NDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAME 361
Query: 1059 VSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSD 1118
++QMVTQ MW DS L QLPHFT + KRC + + +E+VF Q+SD
Sbjct: 362 LAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLSD 418
Query: 1119 VQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYP 1178
Q+ D+ARFCNR+PNI++SY+V D +++R+GG L V LER+ GPV + +P
Sbjct: 419 SQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVL-VQLERE---EEVTGPVIAPLFP 474
Query: 1179 KAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGC 1238
+ +EEGWW+V+ DAK+N L++IKR++LQ+K++ KLDF AP G YTL FM D+YMGC
Sbjct: 475 QKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHN-YTLYFMSDAYMGC 533
Query: 1239 DQEYSFTVDVKEA 1251
DQEY F+VDVKEA
Sbjct: 534 DQEYKFSVDVKEA 546
Score = 302 (111.4 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 60/176 (34%), Positives = 106/176 (60%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+LVE LF G +QV+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM
Sbjct: 45 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQM 104
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRA RP D G +I+ S+ ++ + + LP+ES + + NAEIV T++N
Sbjct: 105 VGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIEN 164
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++A +++ +T+LY RM +NP Y L + L + +++L+ + L+++ +
Sbjct: 165 KQDAVDYLTWTFLYRRMTQNPNYYNLQG-ISHRHLSDHLSELVEQTLSDLEQSKCI 219
Score = 125 (49.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 198 LAKLLDRVPIPVKE-SLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRAL 251
L +L +VP + +P K N+LLQ ++S+++L L SD A RL +A
Sbjct: 285 LRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQAC 343
Query: 252 FEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+++ GW A A++L++MVT+ MWS + L+Q +E + + K
Sbjct: 344 VDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDK 394
Score = 46 (21.3 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 330 KVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLN 370
KV G +E+ E + I HHE LL++ + H LN
Sbjct: 258 KVRGLIEIISNAAE-YENIPIRHHEDNLLRQLAQKVPHKLN 297
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 730 (262.0 bits), Expect = 7.3e-148, Sum P(3) = 7.3e-148
Identities = 211/637 (33%), Positives = 336/637 (52%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITR+V+R + I D+ WD VHG +E F +++ED DGD IL+++ + +
Sbjct: 1209 QPITRSVMRFNIEIIADWIWDMNVHGSLEPFLLMLEDTDGDSILYYDVLFITPDIVGHEF 1268
Query: 368 SLNFTVPIYEPLPPQHLILPEKFPPPTELLDL--QLLPVTALQNP-SYEALYQNYKLFNP 424
+L+FT YE QH + PP L L + + + P S+ ++ K F P
Sbjct: 1269 TLSFT---YEL--KQH---NQNNLPPNFFLTLISENWWHSEFEIPVSFNG-FKLPKKFPP 1319
Query: 425 IQTQVFAVLYNTED--NVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSGKT 481
+ + +T + N + + F ++ + ++ +L N V + G+GKT
Sbjct: 1320 PTPLLENISISTSELGNDDFSEVFEFKTFNKI--QSQVFESLYNSNDSVFVGSGKGTGKT 1377
Query: 482 ICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV-ELTVETA 540
AE A+L NH R ++ G RAVYI P DW ++F G ++ +L + +
Sbjct: 1378 AMAELALL-NHWRQNK-G--RAVYINPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPS 1433
Query: 541 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVA 599
++LKLL K ++++TP +++ LSRRW+QRK +Q + L I D+ H I G G V E +++
Sbjct: 1434 LNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMIYDDAHEISQGVYGAVYETLIS 1493
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV-D 658
RM +IA+Q+E KIR V LS LANA+D GEW G + ++NF P R PLEI IQ D
Sbjct: 1494 RMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTKSNIYNFSPSERIEPLEINIQSFKD 1553
Query: 659 ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718
+ + +M + + A A N + VF+PSRK A M +S K +
Sbjct: 1554 VEHISFNF-SMLQMAFEASAAAAGNRNSSSVFLPSRKDCMEVASAFMKFS-KAIEWD--M 1609
Query: 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
L +++ P++ + + LRA L+ GVG L++G+ +D+ +V L+E G + V ++S
Sbjct: 1610 LNVEEEQIVPYIEKLTDGHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKD 1669
Query: 779 M----CWE---VPLTAHLATG--RKMLILTT--LLQMMGHA-GRPLLDNSEKCVILCHAP 826
C + L +L G K + T LL+M+G A G + + K +IL
Sbjct: 1670 CSAFACKTDEVIILGTNLYDGAEHKYMPYTINELLEMVGLASGNDSM--AGKVLILTSHN 1727
Query: 827 HKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPN 883
K YYKKFL E P ES+L + +HD N EI +I++KQD VD+ T+++ R+ NP+
Sbjct: 1728 MKAYYKKFLIEPLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPS 1787
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMED 920
YY ++ S +S LS LVE ++DL + I ++D
Sbjct: 1788 YYGVRDTSPHGISVFLSNLVETCLNDLVESSFIEIDD 1824
Score = 656 (236.0 bits), Expect = 1.6e-139, Sum P(3) = 1.6e-139
Identities = 159/476 (33%), Positives = 271/476 (56%)
Query: 798 LTTLLQMMGHA-GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAE 856
+ LL+M+G A G + + K +IL K YYKKFL E P ES+L + +HD N E
Sbjct: 1700 INELLEMVGLASGNDSM--AGKVLILTSHNMKAYYKKFLIEPLPTESYLQYIIHDTLNNE 1757
Query: 857 IVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDL--- 910
I +I++KQD VD+ T+++ R+ NP+YY ++ S +S LS LVE ++DL
Sbjct: 1758 IANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLVES 1817
Query: 911 ----------EATRSIIMEDD--MDLCPS-NYGMIASYYYISYKTIECFSSSLTSKTKMK 957
E T + DD ++ + + G+IAS+Y +S+ TI+ F SSL++ + +K
Sbjct: 1818 SFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLK 1877
Query: 958 GLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDP---HVKANALLQAHFS 1014
+L VL++A E+ +P+R G+ L+ +L +R P+ T K LLQA+FS
Sbjct: 1878 NMLYVLSTAVEFESVPLRKGDRALLVKL--SKRLPLRFPEHTSSGSVSFKVFLLLQAYFS 1935
Query: 1015 ARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSML 1074
+ + + D + +L L+ +VD++S+NG+L+ A AM+++QM+ QG+W+ D+ L
Sbjct: 1936 RLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPL 1994
Query: 1075 LQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNI 1134
Q+PHF + ++C+E ++ETV+ ++D QL +A F N +PN+
Sbjct: 1995 RQIPHFNNKILEKCKEI---NVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNV 2051
Query: 1135 DMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKT 1194
+++Y + +S+++ +G + + + L RD+ E V S +YP K E WWLV+ +
Sbjct: 2052 ELTYSLNNSDSLISGVKQK-ITIQLTRDV--EPENLQVTSEKYPFDKLESWWLVLGEVSK 2108
Query: 1195 NQLLAIKRVSLQRKSRA-KLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVK 1249
+L AIK+V+L ++++ +L+F P G K T+ +CDSY+ D+E SF ++VK
Sbjct: 2109 KELYAIKKVTLNKETQQYELEFDTPTSG-KHNLTIWCVCDSYLDADKELSFEINVK 2163
Score = 579 (208.9 bits), Expect = 7.3e-148, Sum P(3) = 7.3e-148
Identities = 112/192 (58%), Positives = 144/192 (75%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R DR L EDLF DG +QVLV TA LAWGVNLPAHTVIIKGT VY+PEKG+W +LSP D
Sbjct: 808 LTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQD 867
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QMLGRAGRP+YD++GEGIIIT S +QYYLS++NQQLPIESQFVSKL + LNAE+V G
Sbjct: 868 VLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAG 927
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL-DITLGERITDLIHTAANVLDRNNL 179
++ +A NW+ YTYLY RML +P+LY + P++ D L + L+H+A +L L
Sbjct: 928 NIKCRNDAVNWLAYTYLYVRMLASPMLYKV-PDISSDGQLKKFRESLVHSALCILKEQEL 986
Query: 180 VKYGRKSGYFQS 191
V Y ++ ++
Sbjct: 987 VLYDAENDVIEA 998
Score = 552 (199.4 bits), Expect = 3.0e-114, Sum P(3) = 3.0e-114
Identities = 140/428 (32%), Positives = 225/428 (52%)
Query: 470 VLQLAPTGSGKTICAEFAILR--NHQRASET-----GVMRAVYIAPIEALAKQRYCDWER 522
+L APTGSGKT A +L+ +H +T + VYIAP++AL +++ +++R
Sbjct: 517 MLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQR 576
Query: 523 KFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 582
+ LG+ V ELT ++ + K +++ Q+++STPEKWD +R V+ V L IIDE
Sbjct: 577 RLAF-LGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDE 635
Query: 583 LHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFP 642
+HL+ GPVLE IVAR + + + RI+ LS +L N +D+G ++ G+F F
Sbjct: 636 IHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKEGLFYFD 695
Query: 643 PGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAV 702
RP PL Q G+ N ++KAM Y +++ +VFV SRK TA
Sbjct: 696 SSFRPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTAT 755
Query: 703 DLMIYSCKDS-DQKSAFLLCSAKEV-EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEV 760
L +++ K +K++ + + + + LR + G+G H GL +SD+ +
Sbjct: 756 WLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSL 815
Query: 761 VSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGR----------KMLILTTLLQMMGHA 808
LF G ++V V ++++ W V L AH + G + L +LQM+G A
Sbjct: 816 SEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRA 875
Query: 809 GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868
GRP D + +I+ + +YY L + P+ES L DN NAE+VAG I+ + DA
Sbjct: 876 GRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDA 935
Query: 869 VDYLTWTF 876
V++L +T+
Sbjct: 936 VNWLAYTY 943
Score = 315 (115.9 bits), Expect = 7.7e-25, Sum P(2) = 7.7e-25
Identities = 81/296 (27%), Positives = 147/296 (49%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
+LQM+G AGRP D + +I+ + +YY L + P+ES L DN NAE+VAG
Sbjct: 868 VLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAG 927
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHR-HLSDHLSELVENTISDLEATRSI 916
I+ + DAV++L +T+ R+ +P Y + +S L LV + + L+ +
Sbjct: 928 NIKCRNDAVNWLAYTYLYVRMLASPMLYKVPDISSDGQLKKFRESLVHSALCILKEQELV 987
Query: 917 IMEDDMDLCPS-NYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIR 975
+ + + D+ + + G IAS +YI++ +++ ++ L T L + + + E+ + +R
Sbjct: 988 LYDAENDVIEATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVR 1047
Query: 976 PGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLL--SA 1033
E+ +++L+ DP K N LLQ++FS EG L+ + V + +A
Sbjct: 1048 YEEKRELKQLLEKAPIPIRED-IDDPLAKVNVLLQSYFSQLKFEG-FALNSDIVFIHQNA 1105
Query: 1034 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQ 1089
RLL+AM ++ GW + + + + T MW + L Q ++ KR +
Sbjct: 1106 GRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLE 1161
Score = 283 (104.7 bits), Expect = 7.3e-148, Sum P(3) = 7.3e-148
Identities = 56/111 (50%), Positives = 74/111 (66%)
Query: 195 KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSR 249
K EL +LL++ PIP++E +++P AK+NVLLQ+Y SQLK EG +L SD+ +AGRL R
Sbjct: 1051 KRELKQLLEKAPIPIREDIDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGRLLR 1110
Query: 250 ALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLE 300
A+FEI LKRGW L L K T +MW PLRQF P E++ +LE
Sbjct: 1111 AMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLE 1161
Score = 175 (66.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 50/185 (27%), Positives = 93/185 (50%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M D ++V+ L+ G V VL+ + + + VII GT +Y+ + + + +
Sbjct: 1644 MASNDERIVKRLYEYGAVSVLLISKDCS-AFACKTDEVIILGTNLYDGAEHKYMPYTINE 1702
Query: 61 IMQMLGRAGRPQYDSY-GEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVL 119
+++M+G A DS G+ +I+T H+ YY + + LP ES + + LN EI
Sbjct: 1703 LLEMVGLASGN--DSMAGKVLILTSHNMKAYYKKFLIEPLPTESYLQYIIHDTLNNEIAN 1760
Query: 120 GTVQNAKEACNWIEYTYLYTRMLRNPVLYGL---SPEVLDITLGERITDLIHTAANVLDR 176
+Q+ ++ +W Y+Y Y R+ NP YG+ SP + + L ++L+ T N L
Sbjct: 1761 SIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFL----SNLVETCLNDLVE 1816
Query: 177 NNLVK 181
++ ++
Sbjct: 1817 SSFIE 1821
Score = 104 (41.7 bits), Expect = 8.1e-57, Sum P(2) = 8.1e-57
Identities = 34/111 (30%), Positives = 56/111 (50%)
Query: 198 LAKLLDRVPI--PVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRA 250
L KL R+P+ P S S K+ +LLQ Y S+L+L + +D+ L
Sbjct: 1902 LVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELP-VDFQNDLKDILEKVVPLINV 1960
Query: 251 LFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 301
+ +I+ G+ A A+ L++M+ + +W V PLRQ N+IL K ++
Sbjct: 1961 VVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKE 2010
Score = 70 (29.7 bits), Expect = 3.0e-114, Sum P(3) = 3.0e-114
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 391 PPPTE-LLDLQLLPVTALQNPSYEALYQNYKL-FNPIQTQVFAVLYNTEDNVLVAA 444
P P++ ++D +L +T+L + EA + NPIQ++VF + + N+L+ A
Sbjct: 466 PAPSKPVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICA 521
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 486 (176.1 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 125/406 (30%), Positives = 213/406 (52%)
Query: 308 KPITRTVLRVELTIT-PDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEED 366
+PIT+T++++ L + + W D+ + +E F + + + + IL+ + F + K+ ++
Sbjct: 1235 QPITQTIMKINLNVKLTNTIWSDQWNDIIENFHIFLLNTLNNDILYFQKFSIHKKDRKKI 1294
Query: 367 HSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQ 426
H ++F P+ +PPQ + +Q L + N S+ ++ LF +
Sbjct: 1295 HDISFEFPLSNQIPPQ--------------ITVQFLSMNWC-NLSFVHIFNTNNLFINQK 1339
Query: 427 TQVFA-VLYNTEDNVLVAALSRKLMFARL----PAK-QRITAALPNIILVLQLAPTGSGK 480
VF+ +L T + V + + F P + Q A +L APTGSGK
Sbjct: 1340 INVFSEILPLTPLSTNVLNIPNYIKFFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGK 1399
Query: 481 TICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA 540
T+ E ILRN R G ++VYI P++A+ +RY W+ KF V+ELT +
Sbjct: 1400 TVIGELCILRNLLRCE--G-QKSVYICPMKAIVNERYKSWKSKFKSLFNKNVIELTGDKN 1456
Query: 541 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVA 599
+ + + + III TPEK D ++R WK +K+V+ ++L I DE+HL+G + G V+E++V
Sbjct: 1457 ENKENIAESNIIICTPEKLDVITRNWKNKKFVKNINLIIFDEIHLLGQENRGGVIEILVN 1516
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
R + + +++ KIR++ L+T + + DL W+ + +FNFP R VP + I G
Sbjct: 1517 RFKNMQNELNKKIRLIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVPCKTHILGFTQ 1576
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705
+ RM M K + AI Q+A+ K L+FV SR+ RLTA D++
Sbjct: 1577 KAYCNRMSVMNKNVFDAINQYAQT-KNVLIFVSSRRQTRLTAYDII 1621
Score = 398 (145.2 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 81/181 (44%), Positives = 110/181 (60%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R D+ LVE LF VL T+ LAWGVNLP HTVIIKGT ++ E G ++ LD
Sbjct: 763 MSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGKLEDMDILD 822
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I Q+ GR GRPQY+S+G I+IT ++L Y+ L+ IES F+ + LNAEI +G
Sbjct: 823 INQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVIESNFLKNIENHLNAEISIG 882
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T++N ++ W+EYTYL+ RM +NP LY + D+ L + D+I A L N LV
Sbjct: 883 TIKNIEDGIKWLEYTYLFIRMKKNPYLYDVDINN-DLNLYNKRKDIIMKAIQNLSENKLV 941
Query: 181 K 181
+
Sbjct: 942 R 942
Score = 340 (124.7 bits), Expect = 1.0e-30, Sum P(7) = 1.0e-30
Identities = 105/438 (23%), Positives = 204/438 (46%)
Query: 502 RAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDA 561
+ +YIAP+++L + + RK K + V E T E ++ K LE+ II++ PEK D
Sbjct: 506 KIIYIAPMKSLVFE-ITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVTVPEKLDI 564
Query: 562 LSRRWKQRKYVQQVSLF------IIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIV 615
L R V SL I+DE+HL+ G V+E IV+R + ++ RI+
Sbjct: 565 LLRNSSYSTTVSDESLIKYIKCLILDEVHLLNTDRGDVIETIVSRFLQYSETSQSIRRIM 624
Query: 616 ALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYT 675
A+S +L N KD+ +++ + + F R + L+ + G+ N A TY
Sbjct: 625 AMSATLPNYKDVRDFLKVENDMCYYFNEKYRSIQLDKTLYGIHEENNNKLYIAKNIYTYN 684
Query: 676 AIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL--LCSAKEVEPHVSII 733
I+ K +K ++FV SR T ++ +I +++ F+ + + +++ +
Sbjct: 685 EIINSLKKDKQCIIFVCSRNETNKT-IEFLINHALKNNEIEYFVNNVYTDNDIKKKIKKS 743
Query: 734 QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA--- 790
++ G H G+++SD+ +V +LF+ V +S++ W V L H
Sbjct: 744 NNLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIK 803
Query: 791 --------TGR-KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPV 841
+G+ + + + + Q+ G GRP ++ +++ Y K L +
Sbjct: 804 GTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVI 863
Query: 842 ESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDH 898
ES+ + ++ NAEI G I+N +D + +L +T+ R+ +NP Y++ + +L +
Sbjct: 864 ESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVDINNDLNLYNK 923
Query: 899 LSELVENTISDLEATRSI 916
+++ I +L + +
Sbjct: 924 RKDIIMKAIQNLSENKLV 941
Score = 276 (102.2 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 69/230 (30%), Positives = 123/230 (53%)
Query: 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH 788
++++I+ E L+ L+ G+G H GLN++D+ +V LF I++ + +S++ W + L A+
Sbjct: 1798 YLNLIENEHLKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAY 1857
Query: 789 LAT--GR----------KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836
L G K + T LLQM+G AGRP D+ ++L K K FLY
Sbjct: 1858 LVIIKGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLY 1917
Query: 837 EAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYY--NLQGVS 891
+ES++ +++ NAEI + VI NK+D +YLT ++ RL NP+YY +Q V
Sbjct: 1918 HPMNIESNIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFKRLFSNPSYYIKEVQYVQ 1977
Query: 892 ---HRHLSDHLSELVENTISDL--EATRSIIMEDDMDLCPSNYGMIASYY 936
+ LS H +++ + ++D+ + ++ +++ NY + +YY
Sbjct: 1978 FFENSKLSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENY--VLNYY 2025
Score = 269 (99.8 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 57/186 (30%), Positives = 98/186 (52%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ D+ +VE LF + +Q+L+ T+ LAWG+NLPA+ VIIKG + Y+ + + ++ D
Sbjct: 1822 LNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYKDIPYTD 1881
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QM+GRAGRPQ+D I++ + + + IES + E +NAEI
Sbjct: 1882 LLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLYHPMNIESNIMENFNEHINAEICSN 1941
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDR-NNL 179
+ N ++ N++ +Y + R+ NP Y EV + E H + D N++
Sbjct: 1942 VINNKEDIFNYLTKSYYFKRLFSNPSYY--IKEVQYVQFFENSKLSTHAKKIIYDHLNDV 1999
Query: 180 VKYGRK 185
++ G K
Sbjct: 2000 IENGIK 2005
Score = 224 (83.9 bits), Expect = 6.5e-15, Sum P(6) = 6.5e-15
Identities = 59/244 (24%), Positives = 124/244 (50%)
Query: 750 HEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA-----------TGR-KMLI 797
H G+++SD+ +V +LF+ V +S++ W V L H +G+ + +
Sbjct: 760 HAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGKLEDMD 819
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEI 857
+ + Q+ G GRP ++ +++ Y K L +ES+ + ++ NAEI
Sbjct: 820 ILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVIESNFLKNIENHLNAEI 879
Query: 858 VAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDL---E 911
G I+N +D + +L +T+ R+ +NP Y++ + +L + +++ I +L +
Sbjct: 880 SIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVDINNDLNLYNKRKDIIMKAIQNLSENK 939
Query: 912 ATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQ 971
R +++ +D + YG IA+ YY+ YKTI F+ ++ + ++ +++V++ A E+
Sbjct: 940 LVRRVLLTNDF--IGTFYGQIAAKYYVDYKTIGMFAENVQNNNYIE-IIQVISKAKEFEN 996
Query: 972 LPIR 975
+ IR
Sbjct: 997 IQIR 1000
Score = 80 (33.2 bits), Expect = 1.9e-82, Sum P(5) = 1.9e-82
Identities = 28/97 (28%), Positives = 52/97 (53%)
Query: 877 RLTQNPNYY--NLQGV---------SH--RHLSDHLSELVENTISDLEATRSI-IMEDD- 921
RL NP+YY +Q V +H + + DHL++++EN I L + + +++++
Sbjct: 1961 RLFSNPSYYIKEVQYVQFFENSKLSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENY 2020
Query: 922 -MDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMK 957
++ + G IAS YYI +T+ F +S+ + K K
Sbjct: 2021 VLNYYATPLGHIASMYYIKCETVYFFYTSIQAGKKHK 2057
Score = 63 (27.2 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 959 LLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHF-SARH 1017
+ E++ A E+ +P+R E++ +L N P+VK LL + F +
Sbjct: 2152 IFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPLDI---DMNMPNVKTYLLLLSRFYECTY 2208
Query: 1018 MEGNLKLDQEKVLLSASRLLQAMVDV 1043
+ +D + V+ +R++ A +D+
Sbjct: 2209 ETVDYHIDLKLVMDQIARVINAFIDI 2234
Score = 59 (25.8 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 1185 WWLVVDDAKTNQLLAIKRVSLQR-KSRAKLDFAAP-VEGGKKTYTLDFMCDSYMGCDQE 1241
W+ ++ D + ++ ++IKR + K + + F +E GK + + D+Y G + E
Sbjct: 2406 WFAILHDTEQDESISIKRFNNNNLKKVSVISFTLEDMEKGKYNFVIYIHNDTYYGIEHE 2464
Score = 54 (24.1 bits), Expect = 1.0e-30, Sum P(7) = 1.0e-30
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 400 QLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
+L+ V L P + +++ FN +Q++VF + + N+LV A
Sbjct: 320 ELVSVNVL--PFWHKYIFDFEYFNYVQSKVFNSAFRSNKNLLVCA 362
Score = 45 (20.9 bits), Expect = 1.0e-30, Sum P(7) = 1.0e-30
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 470 VLQLAPTGSGKTICAEFAILR 490
+L APTG GKT A IL+
Sbjct: 358 LLVCAPTGCGKTNIALLVILQ 378
Score = 40 (19.1 bits), Expect = 2.7e-35, Sum P(6) = 2.7e-35
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 551 IIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVEN 610
+II E +DA ++++K Y D L +IG G P + + + + +N
Sbjct: 1859 VIIKGNEFYDAKTKKYKDIPYT--------DLLQMIGRAGRPQFDDKALAILLVQEKRKN 1910
Query: 611 KIR 613
I+
Sbjct: 1911 AIK 1913
Score = 39 (18.8 bits), Expect = 1.4e-64, Sum P(6) = 1.4e-64
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 8 LVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIK-GTQVYN 47
L+ D F D +Q++ + + + L + ++IK T V N
Sbjct: 192 LLGDRFLDFIIQIIKNKEQIEKDIKLLSKQIVIKENTLVSN 232
Score = 39 (18.8 bits), Expect = 7.8e-56, Sum P(5) = 7.8e-56
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 210 KESLEEPSAKINVLLQTYISQLKLEGL 236
K S EE N+L Q Y++ ++ E L
Sbjct: 1781 KLSEEERKNVANILFQNYLNLIENEHL 1807
Score = 37 (18.1 bits), Expect = 3.0e-65, Sum P(5) = 3.0e-65
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 6 RQLVEDLFCDGHVQVLVST 24
R ++ +L DG++Q + T
Sbjct: 1222 RNIIPNLDIDGYIQPITQT 1240
Score = 37 (18.1 bits), Expect = 1.4e-64, Sum P(6) = 1.4e-64
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 186 SGYFQSEKIKMELAKLLD 203
+ YF SE K+E +LD
Sbjct: 805 TNYFSSESGKLEDMDILD 822
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 486 (176.1 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 125/406 (30%), Positives = 213/406 (52%)
Query: 308 KPITRTVLRVELTIT-PDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEED 366
+PIT+T++++ L + + W D+ + +E F + + + + IL+ + F + K+ ++
Sbjct: 1235 QPITQTIMKINLNVKLTNTIWSDQWNDIIENFHIFLLNTLNNDILYFQKFSIHKKDRKKI 1294
Query: 367 HSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQ 426
H ++F P+ +PPQ + +Q L + N S+ ++ LF +
Sbjct: 1295 HDISFEFPLSNQIPPQ--------------ITVQFLSMNWC-NLSFVHIFNTNNLFINQK 1339
Query: 427 TQVFA-VLYNTEDNVLVAALSRKLMFARL----PAK-QRITAALPNIILVLQLAPTGSGK 480
VF+ +L T + V + + F P + Q A +L APTGSGK
Sbjct: 1340 INVFSEILPLTPLSTNVLNIPNYIKFFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGK 1399
Query: 481 TICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA 540
T+ E ILRN R G ++VYI P++A+ +RY W+ KF V+ELT +
Sbjct: 1400 TVIGELCILRNLLRCE--G-QKSVYICPMKAIVNERYKSWKSKFKSLFNKNVIELTGDKN 1456
Query: 541 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVA 599
+ + + + III TPEK D ++R WK +K+V+ ++L I DE+HL+G + G V+E++V
Sbjct: 1457 ENKENIAESNIIICTPEKLDVITRNWKNKKFVKNINLIIFDEIHLLGQENRGGVIEILVN 1516
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
R + + +++ KIR++ L+T + + DL W+ + +FNFP R VP + I G
Sbjct: 1517 RFKNMQNELNKKIRLIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVPCKTHILGFTQ 1576
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705
+ RM M K + AI Q+A+ K L+FV SR+ RLTA D++
Sbjct: 1577 KAYCNRMSVMNKNVFDAINQYAQT-KNVLIFVSSRRQTRLTAYDII 1621
Score = 398 (145.2 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 81/181 (44%), Positives = 110/181 (60%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R D+ LVE LF VL T+ LAWGVNLP HTVIIKGT ++ E G ++ LD
Sbjct: 763 MSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGKLEDMDILD 822
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I Q+ GR GRPQY+S+G I+IT ++L Y+ L+ IES F+ + LNAEI +G
Sbjct: 823 INQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVIESNFLKNIENHLNAEISIG 882
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T++N ++ W+EYTYL+ RM +NP LY + D+ L + D+I A L N LV
Sbjct: 883 TIKNIEDGIKWLEYTYLFIRMKKNPYLYDVDINN-DLNLYNKRKDIIMKAIQNLSENKLV 941
Query: 181 K 181
+
Sbjct: 942 R 942
Score = 340 (124.7 bits), Expect = 1.0e-30, Sum P(7) = 1.0e-30
Identities = 105/438 (23%), Positives = 204/438 (46%)
Query: 502 RAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDA 561
+ +YIAP+++L + + RK K + V E T E ++ K LE+ II++ PEK D
Sbjct: 506 KIIYIAPMKSLVFE-ITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVTVPEKLDI 564
Query: 562 LSRRWKQRKYVQQVSLF------IIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIV 615
L R V SL I+DE+HL+ G V+E IV+R + ++ RI+
Sbjct: 565 LLRNSSYSTTVSDESLIKYIKCLILDEVHLLNTDRGDVIETIVSRFLQYSETSQSIRRIM 624
Query: 616 ALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYT 675
A+S +L N KD+ +++ + + F R + L+ + G+ N A TY
Sbjct: 625 AMSATLPNYKDVRDFLKVENDMCYYFNEKYRSIQLDKTLYGIHEENNNKLYIAKNIYTYN 684
Query: 676 AIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL--LCSAKEVEPHVSII 733
I+ K +K ++FV SR T ++ +I +++ F+ + + +++ +
Sbjct: 685 EIINSLKKDKQCIIFVCSRNETNKT-IEFLINHALKNNEIEYFVNNVYTDNDIKKKIKKS 743
Query: 734 QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA--- 790
++ G H G+++SD+ +V +LF+ V +S++ W V L H
Sbjct: 744 NNLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIK 803
Query: 791 --------TGR-KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPV 841
+G+ + + + + Q+ G GRP ++ +++ Y K L +
Sbjct: 804 GTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVI 863
Query: 842 ESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDH 898
ES+ + ++ NAEI G I+N +D + +L +T+ R+ +NP Y++ + +L +
Sbjct: 864 ESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVDINNDLNLYNK 923
Query: 899 LSELVENTISDLEATRSI 916
+++ I +L + +
Sbjct: 924 RKDIIMKAIQNLSENKLV 941
Score = 276 (102.2 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 69/230 (30%), Positives = 123/230 (53%)
Query: 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH 788
++++I+ E L+ L+ G+G H GLN++D+ +V LF I++ + +S++ W + L A+
Sbjct: 1798 YLNLIENEHLKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAY 1857
Query: 789 LAT--GR----------KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836
L G K + T LLQM+G AGRP D+ ++L K K FLY
Sbjct: 1858 LVIIKGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLY 1917
Query: 837 EAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYY--NLQGVS 891
+ES++ +++ NAEI + VI NK+D +YLT ++ RL NP+YY +Q V
Sbjct: 1918 HPMNIESNIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFKRLFSNPSYYIKEVQYVQ 1977
Query: 892 ---HRHLSDHLSELVENTISDL--EATRSIIMEDDMDLCPSNYGMIASYY 936
+ LS H +++ + ++D+ + ++ +++ NY + +YY
Sbjct: 1978 FFENSKLSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENY--VLNYY 2025
Score = 269 (99.8 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 57/186 (30%), Positives = 98/186 (52%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ D+ +VE LF + +Q+L+ T+ LAWG+NLPA+ VIIKG + Y+ + + ++ D
Sbjct: 1822 LNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYKDIPYTD 1881
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QM+GRAGRPQ+D I++ + + + IES + E +NAEI
Sbjct: 1882 LLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLYHPMNIESNIMENFNEHINAEICSN 1941
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDR-NNL 179
+ N ++ N++ +Y + R+ NP Y EV + E H + D N++
Sbjct: 1942 VINNKEDIFNYLTKSYYFKRLFSNPSYY--IKEVQYVQFFENSKLSTHAKKIIYDHLNDV 1999
Query: 180 VKYGRK 185
++ G K
Sbjct: 2000 IENGIK 2005
Score = 224 (83.9 bits), Expect = 6.5e-15, Sum P(6) = 6.5e-15
Identities = 59/244 (24%), Positives = 124/244 (50%)
Query: 750 HEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA-----------TGR-KMLI 797
H G+++SD+ +V +LF+ V +S++ W V L H +G+ + +
Sbjct: 760 HAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGKLEDMD 819
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEI 857
+ + Q+ G GRP ++ +++ Y K L +ES+ + ++ NAEI
Sbjct: 820 ILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTVIESNFLKNIENHLNAEI 879
Query: 858 VAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDL---E 911
G I+N +D + +L +T+ R+ +NP Y++ + +L + +++ I +L +
Sbjct: 880 SIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVDINNDLNLYNKRKDIIMKAIQNLSENK 939
Query: 912 ATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQ 971
R +++ +D + YG IA+ YY+ YKTI F+ ++ + ++ +++V++ A E+
Sbjct: 940 LVRRVLLTNDF--IGTFYGQIAAKYYVDYKTIGMFAENVQNNNYIE-IIQVISKAKEFEN 996
Query: 972 LPIR 975
+ IR
Sbjct: 997 IQIR 1000
Score = 80 (33.2 bits), Expect = 1.9e-82, Sum P(5) = 1.9e-82
Identities = 28/97 (28%), Positives = 52/97 (53%)
Query: 877 RLTQNPNYY--NLQGV---------SH--RHLSDHLSELVENTISDLEATRSI-IMEDD- 921
RL NP+YY +Q V +H + + DHL++++EN I L + + +++++
Sbjct: 1961 RLFSNPSYYIKEVQYVQFFENSKLSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENY 2020
Query: 922 -MDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMK 957
++ + G IAS YYI +T+ F +S+ + K K
Sbjct: 2021 VLNYYATPLGHIASMYYIKCETVYFFYTSIQAGKKHK 2057
Score = 63 (27.2 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 959 LLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHF-SARH 1017
+ E++ A E+ +P+R E++ +L N P+VK LL + F +
Sbjct: 2152 IFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPLDI---DMNMPNVKTYLLLLSRFYECTY 2208
Query: 1018 MEGNLKLDQEKVLLSASRLLQAMVDV 1043
+ +D + V+ +R++ A +D+
Sbjct: 2209 ETVDYHIDLKLVMDQIARVINAFIDI 2234
Score = 59 (25.8 bits), Expect = 7.5e-103, Sum P(5) = 7.5e-103
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 1185 WWLVVDDAKTNQLLAIKRVSLQR-KSRAKLDFAAP-VEGGKKTYTLDFMCDSYMGCDQE 1241
W+ ++ D + ++ ++IKR + K + + F +E GK + + D+Y G + E
Sbjct: 2406 WFAILHDTEQDESISIKRFNNNNLKKVSVISFTLEDMEKGKYNFVIYIHNDTYYGIEHE 2464
Score = 54 (24.1 bits), Expect = 1.0e-30, Sum P(7) = 1.0e-30
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 400 QLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
+L+ V L P + +++ FN +Q++VF + + N+LV A
Sbjct: 320 ELVSVNVL--PFWHKYIFDFEYFNYVQSKVFNSAFRSNKNLLVCA 362
Score = 45 (20.9 bits), Expect = 1.0e-30, Sum P(7) = 1.0e-30
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 470 VLQLAPTGSGKTICAEFAILR 490
+L APTG GKT A IL+
Sbjct: 358 LLVCAPTGCGKTNIALLVILQ 378
Score = 40 (19.1 bits), Expect = 2.7e-35, Sum P(6) = 2.7e-35
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 551 IIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVEN 610
+II E +DA ++++K Y D L +IG G P + + + + +N
Sbjct: 1859 VIIKGNEFYDAKTKKYKDIPYT--------DLLQMIGRAGRPQFDDKALAILLVQEKRKN 1910
Query: 611 KIR 613
I+
Sbjct: 1911 AIK 1913
Score = 39 (18.8 bits), Expect = 1.4e-64, Sum P(6) = 1.4e-64
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 8 LVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIK-GTQVYN 47
L+ D F D +Q++ + + + L + ++IK T V N
Sbjct: 192 LLGDRFLDFIIQIIKNKEQIEKDIKLLSKQIVIKENTLVSN 232
Score = 39 (18.8 bits), Expect = 7.8e-56, Sum P(5) = 7.8e-56
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 210 KESLEEPSAKINVLLQTYISQLKLEGL 236
K S EE N+L Q Y++ ++ E L
Sbjct: 1781 KLSEEERKNVANILFQNYLNLIENEHL 1807
Score = 37 (18.1 bits), Expect = 3.0e-65, Sum P(5) = 3.0e-65
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 6 RQLVEDLFCDGHVQVLVST 24
R ++ +L DG++Q + T
Sbjct: 1222 RNIIPNLDIDGYIQPITQT 1240
Score = 37 (18.1 bits), Expect = 1.4e-64, Sum P(6) = 1.4e-64
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 186 SGYFQSEKIKMELAKLLD 203
+ YF SE K+E +LD
Sbjct: 805 TNYFSSESGKLEDMDILD 822
>UNIPROTKB|I3LT20 [details] [associations]
symbol:LOC100525691 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
Length = 354
Score = 767 (275.1 bits), Expect = 2.3e-75, P = 2.3e-75
Identities = 172/325 (52%), Positives = 219/325 (67%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
+PITR+ L+VELTITPDFQWD+KVHG E FW++VED D + ILHHEYFLLK +Y +++H
Sbjct: 25 QPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEH 84
Query: 368 SLNFTVPIYEPLPPQHLI--LPEKFPP-PTEL-LDLQLLPVTALQNPSYEALYQNYKLFN 423
+ F VP++EPLPPQ+ I + +++ T+L + + L + P E L +
Sbjct: 85 LITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVS 144
Query: 424 PIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSGKTI 482
++ F LY +D K F P + ++ + N V APTGSGKTI
Sbjct: 145 ALRNSAFESLY--QD---------KFPFFN-PIQTQVFNTVYNSDDNVFVGAPTGSGKTI 192
Query: 483 CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
CAEFAILR + SE G R VYI P+EALA+Q Y DW KF L VV LT ET+ D
Sbjct: 193 CAEFAILRMLLQNSE-G--RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 249
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
LKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI +RMR
Sbjct: 250 LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 309
Query: 603 YIASQVENKIRIVALSTSLANAKDL 627
YI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 310 YISSQIERPIRIVALSSSLSNAKDV 334
>UNIPROTKB|H9L351 [details] [associations]
symbol:H9L351 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
EMBL:AADN02064074 Ensembl:ENSGALT00000021750
Ensembl:ENSGALT00000036125 Uniprot:H9L351
Length = 254
Score = 724 (259.9 bits), Expect = 1.1e-70, P = 1.1e-70
Identities = 141/192 (73%), Positives = 160/192 (83%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL LD
Sbjct: 49 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 108
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QMLGRAGRPQYD+ GEGI+IT H ELQYYLSL+NQQLPIESQ VSKL ++LNAE VLG
Sbjct: 109 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAETVLG 168
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
VQNAK+A NW+ YTYLY RMLR+P LYG+S + L D L +R DL+HTAA +LD+NN
Sbjct: 169 NVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN 228
Query: 179 LVKYGRKSGYFQ 190
LVKY +K+G FQ
Sbjct: 229 LVKYDKKTGNFQ 240
Score = 221 (82.9 bits), Expect = 7.9e-17, P = 7.9e-17
Identities = 72/258 (27%), Positives = 121/258 (46%)
Query: 709 CKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765
C + D FL S + + + L+ L G H G+ + D+ +V LF
Sbjct: 2 CLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLF 61
Query: 766 EAGKIKVCVMSSSMCWEVPLTAH--LATGRKM----------LILTTLLQMMGHAGRPLL 813
I+V V ++++ W V L AH + G ++ L +LQM+G AGRP
Sbjct: 62 ADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQY 121
Query: 814 DNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLT 873
D + +++ +YY L + P+ES + L D NAE V G ++N +DAV++L
Sbjct: 122 DTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAETVLGNVQNAKDAVNWLG 181
Query: 874 WTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDD----MDLCP 926
+T+ R+ ++P Y G+SH L L++ DL T +++++ + D
Sbjct: 182 YTYLYIRMLRSPTLY---GISHDDLKG--DPLLDQRRLDLVHTAALMLDKNNLVKYDKKT 236
Query: 927 SNY-----GMIASYYYIS 939
N+ G IAS+YYI+
Sbjct: 237 GNFQVTELGRIASHYYIT 254
>UNIPROTKB|F1RYR3 [details] [associations]
symbol:LOC100517018 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00700000104562
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
EMBL:CU104757 Ensembl:ENSSSCT00000004816 Uniprot:F1RYR3
Length = 391
Score = 485 (175.8 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 118/290 (40%), Positives = 171/290 (58%)
Query: 308 KPITRTVLRVELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TE 364
+PITRTVLRV L+I PDF W+D+VHG V E +W+ VED D+I H EYFL LKKQ ++
Sbjct: 120 QPITRTVLRVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISK 179
Query: 365 EDHSLNFTVPIYEPLPPQHLI--LPEKF--PPPTELLDLQLLPVTALQNPSYEALYQNYK 420
E L FT+PI+EPLP Q+ I + +++ +++ Q L + P E L
Sbjct: 180 EAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPL 239
Query: 421 LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARL-PAKQRITAALPNIIL-VLQLAPTGS 478
+ + + LYN F+ P + +I L + VL APTGS
Sbjct: 240 PVTALGCEAYEALYN---------------FSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 284
Query: 479 GKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVE 538
GKT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 285 GKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGD 341
Query: 539 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 588
D+K + K +I++TPEKWD +SR W+ R YV+QV++ IIDE+HL+GG
Sbjct: 342 VTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGG 391
Score = 158 (60.7 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 233 LEGLSLTSD-----MSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQ 287
++ SL SD +A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQ
Sbjct: 1 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQ 60
Query: 288 FNGIPNEILMKLEKKDFFLGK 308
F+ +P IL +LE+K+ + K
Sbjct: 61 FSVLPPHILTRLEEKNLTVDK 81
Score = 48 (22.0 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 1183 EGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKLDFAAPV-EGGKKTYTLDFMCDSY 1235
E WW+ V+D + + L +K+ + ++++ L F P+ E Y + + D +
Sbjct: 149 EPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQL-LVFTIPIFEPLPSQYYIRAVSDRW 207
Query: 1236 MGCD 1239
+G +
Sbjct: 208 LGAE 211
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 622 (224.0 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
Identities = 205/790 (25%), Positives = 372/790 (47%)
Query: 501 MRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWD 560
++ VY+API+AL QR+ DW++KFG C DL ++ II++TPEKWD
Sbjct: 333 IKIVYMAPIKALCSQRFDDWKKKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWD 392
Query: 561 ALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVARMRYI---ASQVENK----- 611
+++R+W+ V V LF+IDE+H++ + GP LEV+V+RM+ + + VEN
Sbjct: 393 SMTRKWRDNSLVHLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQILSPAVENTNSIIP 452
Query: 612 IRIVALSTSLANAKDLGEWI--GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAM 669
+R VA+S ++ NA+D+ EW+ G S RPV L + G ++ + K
Sbjct: 453 MRFVAVSATIPNAEDIAEWLSDGERSAVCLKMDERHRPVKLRKVVLGFPSSDNQTEFKFD 512
Query: 670 TKPTY--TAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVE 727
Y +I+Q ++KP LVF +RK + A L+ D K + + ++
Sbjct: 513 LTLNYKIASIIQTYSDQKPTLVFCATRKGVQQAASVLV------KDAKFIMTVEQKQRLQ 566
Query: 728 PHVSIIQEEMLRATLRL-GVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT 786
I++ LR + + GV Y H G+ SD++VV F G I V +S++ V L
Sbjct: 567 KCAYSIKDSKLRVDILIHGVAYHHAGMELSDRKVVEGAFTVGDIPVLFTTSTLAMGVNLP 626
Query: 787 AHLATGRKMLIL----------TTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836
AHL + + T +LQM+G AGRP D + VI+ KE Y + L
Sbjct: 627 AHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLA 686
Query: 837 EAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL-QGVSH 892
+ +ES LH L ++ NAEIV I N A++++ T R +NP++Y G++
Sbjct: 687 CSDTIESSLHRHLIEHLNAEIVLHTITNVNIALEWIRSTLLYIRALKNPSHYGFASGLNK 746
Query: 893 RHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTS 952
+ L EL ++DL + I M++D++ P+ G + ++YYI+++T++ F + ++
Sbjct: 747 DGIESKLQELCLKNLNDLSSLNLIKMDEDINFKPTEAGRLMAWYYITFETVKKFCT-MSG 805
Query: 953 KTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINH-QRFSFANP---KCTDPHVKANAL 1008
K + L+ ++AS E+ + +R E++ + L R + P + +K N L
Sbjct: 806 KETLSDLVTMIASCKEFLDVQLRINEKKALNTLNKDPNRTTIRFPMEGRIKTREMKVNCL 865
Query: 1009 LQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1067
+QA ++ L D K+ + SR+ + + D +++ ++ L ++ +++ +
Sbjct: 866 IQAQLGCIPVQDFALTQDTAKIFRNGSRITRWLSDFVATQEKFAVLLNSLILAKCFRCKL 925
Query: 1068 WEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIAR- 1126
WE+ PH +K L E G ++ +++L+ + R
Sbjct: 926 WENS------PHVSKQL-----EKIGITLSNAMVNAGLTSFKKIEETDARELELI-LNRH 973
Query: 1127 --FCNRFPNIDM---SYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAK 1181
F + M Y+++ + R DT ++++ L +L + +
Sbjct: 974 PPFGTQIKETVMYLPKYELEVEQITRYS--DTMAEILVTVILRNFEQL----QTKRTASN 1027
Query: 1182 EEGWWLVVDDAKTNQLLAIKRV--SLQRKS---RAKLDFAAPVEGGKKTYTLDFMCDSYM 1236
L++ DA NQL+ ++ S+ K+ K D ++ + +++ + Y+
Sbjct: 1028 SHYVTLIIGDAD-NQLVFKHKIMDSVLLKAGNWAKKFDVRRALKS--ENLSINLISSEYV 1084
Query: 1237 GCDQEYSFTV 1246
G D + FTV
Sbjct: 1085 GLDIQRKFTV 1094
Score = 440 (159.9 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 116/332 (34%), Positives = 178/332 (53%)
Query: 474 APTGSGKTICAEFAILRNHQRAS-ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
APTGSGKT+ E AI R ++ VY+API+AL QR+ DW++KFG +G+
Sbjct: 305 APTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKKKFGP-IGLNC 363
Query: 533 VELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
ELT +T MD L ++ II++TPEKWD+++R+W+ V V LF+IDE+H++ +
Sbjct: 364 KELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVHLVRLFLIDEVHVVKDENR 423
Query: 591 GPVLEVIVARMRYI---ASQVENK-----IRIVALSTSLANAKDLGEWI--GASSHGVFN 640
GP LEV+V+RM+ + + VEN +R VA+S ++ NA+D+ EW+ G S
Sbjct: 424 GPTLEVVVSRMKTVQILSPAVENTNSIIPMRFVAVSATIPNAEDIAEWLSDGERSAVCLK 483
Query: 641 FPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKYAR 698
RPV L + G ++ + K Y +I+Q ++KP LVF +RK +
Sbjct: 484 MDERHRPVKLRKVVLGFPSSDNQTEFKFDLTLNYKIASIIQTYSDQKPTLVFCATRKGVQ 543
Query: 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRL-GVGYLHEGLNKSD 757
A L+ D K + + ++ I++ LR + + GV Y H G+ SD
Sbjct: 544 QAASVLV------KDAKFIMTVEQKQRLQKCAYSIKDSKLRVDILIHGVAYHHAGMELSD 597
Query: 758 QEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL 789
++VV F G I V +S++ V L AHL
Sbjct: 598 RKVVEGAFTVGDIPVLFTTSTLAMGVNLPAHL 629
Score = 320 (117.7 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
Identities = 75/181 (41%), Positives = 102/181 (56%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+ DR++VE F G + VL +T+ LA GVNLPAH V+IK T Y G + E S D
Sbjct: 593 MELSDRKVVEGAFTVGDIPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETD 650
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM+GRAGRPQ+D+ +I+T S + Y+ ++ IES L E LNAEIVL
Sbjct: 651 ILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTIESSLHRHLIEHLNAEIVLH 710
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T+ N A WI T LY R L+NP YG + + + ++ +L N L NL+
Sbjct: 711 TITNVNIALEWIRSTLLYIRALKNPSHYGFASGLNKDGIESKLQELCLKNLNDLSSLNLI 770
Query: 181 K 181
K
Sbjct: 771 K 771
Score = 59 (25.8 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
Identities = 22/93 (23%), Positives = 47/93 (50%)
Query: 397 LDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALS---RKLMFAR 453
LD L VT + + ++++ + FN IQ++ F L T+ N ++ A + + ++F
Sbjct: 260 LD-SLKAVTEIP-AKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFEL 317
Query: 454 LPAKQRITAALP-NIILVLQLAPTGSGKTICAE 485
+ + LP + I ++ +AP K +C++
Sbjct: 318 AITRLLMEVPLPWSNIKIVYMAPI---KALCSQ 347
Score = 57 (25.1 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
Identities = 16/80 (20%), Positives = 38/80 (47%)
Query: 205 VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRALFEIVLKRG 259
+ P++ ++ K+N L+Q + + ++ +LT D + R++R L + V +
Sbjct: 847 IRFPMEGRIKTREMKVNCLIQAQLGCIPVQDFALTQDTAKIFRNGSRITRWLSDFVATQE 906
Query: 260 WSQLAEKALKLSKMVTKRMW 279
+ +L L+K ++W
Sbjct: 907 KFAVLLNSLILAKCFRCKLW 926
Score = 49 (22.3 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVR 983
I FS+ T KTK G L+S++ ++LP + + + R
Sbjct: 1284 ITSFSAE-TEKTKTSGFGNTLSSSTGESKLPFQESKGQFQR 1323
>UNIPROTKB|I3LAA7 [details] [associations]
symbol:I3LAA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026
Ensembl:ENSSSCT00000023674 OMA:ENDQDET Uniprot:I3LAA7
Length = 268
Score = 591 (213.1 bits), Expect = 2.3e-56, P = 2.3e-56
Identities = 114/254 (44%), Positives = 169/254 (66%)
Query: 519 DWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 578
DW+ + ++LG V+ELT + D+K + K +I++TPEKWD +SR W+ R YV+QV++
Sbjct: 3 DWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTIL 62
Query: 579 IIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGV 638
IIDE+HL+G + GPVLEVIV+R +I+S E +RIV LST+LANA+DL +W+ G+
Sbjct: 63 IIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIRQMGL 122
Query: 639 FNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYAR 698
FNF P VRPVPLE+ IQG ++ RM +M KPT+ AI H+ KP L+FV SR+ R
Sbjct: 123 FNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSP-AKPVLIFVSSRRQTR 181
Query: 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
LTA++L+ + + D K +L +E+E + I++ L+ TL G+G H GL++ D+
Sbjct: 182 LTALELIAFLATEEDPKQ-WLNMDEREMENIIGTIRDSNLKLTLAFGIGMHHAGLHERDR 240
Query: 759 EVVSTLFEAGKIKV 772
+ V LF K++V
Sbjct: 241 KTVEELFVNCKVQV 254
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 572 (206.4 bits), Expect = 4.6e-53, Sum P(4) = 4.6e-53
Identities = 173/550 (31%), Positives = 278/550 (50%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V+ APTGSGKT E AI + + ++ + +Y+AP +AL +R DWE KF + L
Sbjct: 272 VVVSAPTGSGKTAIFELAICKLLSQNTDQN-FKVIYVAPTKALCSERARDWESKF-RHLN 329
Query: 530 MCVVELTVET-AMDLKLLEKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFIIDELHLIG 587
+ ELT +T + D+ + QII++TPEK D+++RRW+ RK + V L +IDE+H +
Sbjct: 330 LTSAELTGDTFSTDMSRVRAAQIIVTTPEKLDSITRRWEDYRKLLDLVQLVLIDEVHFLK 389
Query: 588 GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG---ASSHG---VFNF 641
G LEV++ RM+ +QV N IR+VALS ++ N++D+ +W+G +H + F
Sbjct: 390 DTRGATLEVLICRMK---TQVSN-IRVVALSATVPNSEDVAKWLGRGNTDNHQPARLETF 445
Query: 642 PPGVRPVPLEIQIQGVDITN--FEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARL 699
RPV L+ + G+ + F+ + TK I H++ +KP +VF +RK L
Sbjct: 446 GEEFRPVRLQKHVYGLHCSGNAFQFEPQLDTK-LCEVITTHSQ-KKPIIVFCFTRKSCEL 503
Query: 700 TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSI-IQEEMLRATLRLGVGYLHEGLNKSDQ 758
TA L +D K + P ++ + + L+ ++ GV + H GL + D+
Sbjct: 504 TAKKLSQLWISMADDKKPW-------PGPGQNMKVTNDGLQQVMQQGVAFHHAGLEQQDR 556
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGR------KMLILTTL--LQMMGHA 808
V + GK+ V +S++ V L H + G K+L + L +QM+G A
Sbjct: 557 LAVEKAYLEGKLHVICCTSTLSVGVNLPCHTVILKGTMGFQDGKLLEYSDLEVVQMLGRA 616
Query: 809 GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868
GRP DNS +IL + K Y+ +ES LHH L + N+EI G I + A
Sbjct: 617 GRPQFDNSAVAIILTRSETKARYEAMASGTQVLESTLHHNLIHHLNSEICLGTIRSLDSA 676
Query: 869 VDYLTWTF---RLTQNPNYYNLQGVSHR----HLSDHLSELVENTISDLEATRSIIMEDD 921
++L TF RL NP++Y + S H+ + ++ E I+ L+ + I +++
Sbjct: 677 KEWLKSTFLGVRLHANPSHYKIDSQSPNGEKLHVGRSIDDMCEREINLLQEAKLIRFDNN 736
Query: 922 MDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEEL 981
+ C + G S Y I ++T++ T TK+ +L LA A E+ L I+ E L
Sbjct: 737 VLEC-TTAGRSMSEYMIRFETMKMILDMPTG-TKIHDILMTLAKAEEFKDLRIKSNERAL 794
Query: 982 VRRLINHQRF 991
R L N F
Sbjct: 795 YRTL-NESPF 803
Score = 294 (108.6 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 80/257 (31%), Positives = 133/257 (51%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+++ DR VE + +G + V+ T+ L+ GVNLP HTVI+KGT + + G E S L+
Sbjct: 551 LEQQDRLAVEKAYLEGKLHVICCTSTLSVGVNLPCHTVILKGTMGF--QDGKLLEYSDLE 608
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QMLGRAGRPQ+D+ II+T Y ++ + +ES L LN+EI LG
Sbjct: 609 VVQMLGRAGRPQFDNSAVAIILTRSETKARYEAMASGTQVLESTLHHNLIHHLNSEICLG 668
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGL---SPEVLDITLGERITDLIHTAANVLDRN 177
T+++ A W++ T+L R+ NP Y + SP + +G I D+ N+L
Sbjct: 669 TIRSLDSAKEWLKSTFLGVRLHANPSHYKIDSQSPNGEKLHVGRSIDDMCEREINLLQEA 728
Query: 178 NLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSA-KINVLLQTYISQLKLEGL 236
L+++ + + +++ + R +K L+ P+ KI+ +L T + + L
Sbjct: 729 KLIRFD--NNVLECTTAGRSMSEYMIRFET-MKMILDMPTGTKIHDILMTLAKAEEFKDL 785
Query: 237 SLTSDMSAGRLSRALFE 253
+ S+ A L R L E
Sbjct: 786 RIKSNERA--LYRTLNE 800
Score = 240 (89.5 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 107/460 (23%), Positives = 187/460 (40%)
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAG 860
++QM+G AGRP DNS +IL + K Y+ +ES LHH L + N+EI G
Sbjct: 609 VVQMLGRAGRPQFDNSAVAIILTRSETKARYEAMASGTQVLESTLHHNLIHHLNSEICLG 668
Query: 861 VIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHR----HLSDHLSELVENTISDLEAT 913
I + A ++L TF RL NP++Y + S H+ + ++ E I+ L+
Sbjct: 669 TIRSLDSAKEWLKSTFLGVRLHANPSHYKIDSQSPNGEKLHVGRSIDDMCEREINLLQEA 728
Query: 914 RSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLP 973
+ I ++++ C + G S Y I ++T++ T TK+ +L LA A E+ L
Sbjct: 729 KLIRFDNNVLEC-TTAGRSMSEYMIRFETMKMILDMPTG-TKIHDILMTLAKAEEFKDLR 786
Query: 974 IRPGEEELVRRLINHQ--RFSFANPKCTDPHVKANALLQAHF------------SARHME 1019
I+ E L R L R+ T+ K ++Q S+ +
Sbjct: 787 IKSNERALYRTLNESPFIRYQVRAKDITEAWHKVFIIVQLDLGGGDFPSPKSDTSSSVSK 846
Query: 1020 GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEH-DSMLLQLP 1078
+ + + +V LL+ ++D + A+E+ + + G WE S LLQ+P
Sbjct: 847 NHFNITKRQVSDRMKWLLRCVIDCKGAERDSETVNNALELLRSINAGGWEGLPSQLLQVP 906
Query: 1079 HFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRFPNIDMSY 1138
++ + ++ ++ L+D + FP + +
Sbjct: 907 GIGPVSMRKLTTHGITNMASLREADYMAIENILTRKPPFGKNLMDTMK---TFPKLGLEL 963
Query: 1139 KVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLL 1198
+ ++ N ED V LE L T G N P K E + + ++ +
Sbjct: 964 SLSEASNSSHASEDDLSVVKLEAKL---TFEGLDSGNPSPGGKVEYLTFLAETSEKRLVY 1020
Query: 1199 AIK-RVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMG 1237
+ R R RAKL F+A + G+ + F + +G
Sbjct: 1021 FWRGRDWKGRADRAKLIFSATLSSGETEISCHFHYEGLVG 1060
Score = 86 (35.3 bits), Expect = 4.6e-53, Sum P(4) = 4.6e-53
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 419 YKLFNPIQTQVFAVLYNTEDNVLVAAL--SRKLMFARLPAKQRITAALPNIILVLQLAPT 476
++LFN +Q++ FA +Y T DNV+V+A S K L + ++ V+ +APT
Sbjct: 251 FELFNAVQSKSFASVYKTNDNVVVSAPTGSGKTAIFELAICKLLSQNTDQNFKVIYVAPT 310
Query: 477 GSGKTICAEFA 487
K +C+E A
Sbjct: 311 ---KALCSERA 318
Score = 40 (19.1 bits), Expect = 4.6e-53, Sum P(4) = 4.6e-53
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 1020 GNLKLDQEKVLLSASRLL--QAMVDVISSN 1047
G + + +K LL ASR+L ++ D++ ++
Sbjct: 1394 GGISEEDQKKLLEASRILGLRSSPDIVRTD 1423
Score = 39 (18.8 bits), Expect = 4.6e-53, Sum P(4) = 4.6e-53
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 83 TGHSELQYYLSLMNQQLP 100
+GH +Y ++L N+QLP
Sbjct: 110 SGH---EYQVTLFNRQLP 124
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 568 (205.0 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 149/427 (34%), Positives = 229/427 (53%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGV-MRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
APTGSGKT+ E AI R A + M+ VY+API+AL QR+ DW+ KFG +G+
Sbjct: 34 APTGSGKTVVFELAITRLLMEAPLPWLNMKVVYMAPIKALCSQRFDDWKEKFGP-IGLTC 92
Query: 533 VELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
ELT +T MD L ++ II++TPEKWD+++R+W+ ++Q V LF+IDE+H+I +
Sbjct: 93 KELTGDTVMDDLFEIQHANIIMTTPEKWDSMTRKWRDNSFIQLVRLFLIDEVHVIKDENR 152
Query: 591 GPVLEVIVARMRYIAS---QVENK----IRIVALSTSLANAKDLGEWI--GASSHGVFNF 641
GP LEV+V+RM+ + S +EN +R VA+S ++ NA+D+ EW+ G
Sbjct: 153 GPTLEVVVSRMKTVQSLSKTLENASPAPVRFVAVSATIPNAEDIAEWLSDGERPAVCLKM 212
Query: 642 PPGVRPVPLEIQIQGVDITNFEARMK---AMTKPTYTAIMQHAKNEKPALVFVPSRKYAR 698
RPV L+ + G ++ + K A+ Y+ I ++ ++KP LVF +RK +
Sbjct: 213 DESHRPVKLQKVVLGFPSSSNQTEFKFDLALNYKVYSVIRTYS-DQKPTLVFCATRKGVQ 271
Query: 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
A L+ D K + ++ I++ L+ TL GVGY H G+ SD+
Sbjct: 272 QAASVLV------KDAKFIITVEQKLRLQKSAYSIRDSKLKDTLVYGVGYHHAGMELSDR 325
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILT----------TLLQMMGHA 808
++V LF +G + V +S++ V L AHL + + T +LQM+G A
Sbjct: 326 KLVEELFTSGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYTGGAFEEYSETDILQMIGRA 385
Query: 809 GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868
GRP D + VI+ +E Y + L VES LH L ++ NAEIV I + A
Sbjct: 386 GRPQFDTTATAVIMTRLSTREKYVQMLACNDTVESSLHRHLIEHLNAEIVLHTITDVSIA 445
Query: 869 VDYLTWT 875
+D++ T
Sbjct: 446 LDWIRST 452
Score = 421 (153.3 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 131/500 (26%), Positives = 238/500 (47%)
Query: 612 IRIVALSTSLANAKDLGEWI--GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMK-- 667
+R VA+S ++ NA+D+ EW+ G RPV L+ + G ++ + K
Sbjct: 181 VRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPSSSNQTEFKFD 240
Query: 668 -AMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV 726
A+ Y+ I ++ ++KP LVF +RK + A L+ D K + +
Sbjct: 241 LALNYKVYSVIRTYS-DQKPTLVFCATRKGVQQAASVLV------KDAKFIITVEQKLRL 293
Query: 727 EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT 786
+ I++ L+ TL GVGY H G+ SD+++V LF +G + V +S++ V L
Sbjct: 294 QKSAYSIRDSKLKDTLVYGVGYHHAGMELSDRKLVEELFTSGDLPVLFTTSTLAMGVNLP 353
Query: 787 AHLATGRKMLILT----------TLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836
AHL + + T +LQM+G AGRP D + VI+ +E Y + L
Sbjct: 354 AHLVVIKSTMHYTGGAFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTREKYVQMLA 413
Query: 837 EAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYN-LQGVSH 892
VES LH L ++ NAEIV I + A+D++ T R +NP++Y + G++
Sbjct: 414 CNDTVESSLHRHLIEHLNAEIVLHTITDVSIALDWIRSTLLYIRALKNPSHYGFISGLNK 473
Query: 893 RHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTS 952
+ L EL + DL + I M++D++ + G + ++YYI+++T++ F + ++
Sbjct: 474 DGIEAKLQELCLKNLKDLSSLDLIKMDEDLNFRSTEAGRLMAWYYITFETVKKFCA-ISG 532
Query: 953 KTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINH-QRFSFANP---KCTDPHVKANAL 1008
K + L+ +++S SE+ + +R E+ + L R + P + +K N L
Sbjct: 533 KETLSDLISMISSCSEFLDVQLRISEKRTLNTLNKDPNRITIRFPMEGRIKTREMKVNCL 592
Query: 1009 LQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALL-AMEVSQMVTQG 1066
+QA ++ L D K+ + SR+ + + D +++ LL ++ +++
Sbjct: 593 IQAQLGCIPIQDFALTQDTSKIFRNGSRIAKWLSDFVTAQEQKFAVLLNSVILAKCFKCK 652
Query: 1067 MWEHDSMLLQLPHFTKDLAK 1086
+WE+ H +K L K
Sbjct: 653 LWENSQ------HVSKQLDK 666
Score = 320 (117.7 bits), Expect = 6.1e-24, Sum P(3) = 6.1e-24
Identities = 70/149 (46%), Positives = 93/149 (62%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+ DR+LVE+LF G + VL +T+ LA GVNLPAH V+IK T Y GA+ E S D
Sbjct: 320 MELSDRKLVEELFTSGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYTG--GAFEEYSETD 377
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM+GRAGRPQ+D+ +I+T S + Y+ ++ +ES L E LNAEIVL
Sbjct: 378 ILQMIGRAGRPQFDTTATAVIMTRLSTREKYVQMLACNDTVESSLHRHLIEHLNAEIVLH 437
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYG 149
T+ + A +WI T LY R L+NP YG
Sbjct: 438 TITDVSIALDWIRSTLLYIRALKNPSHYG 466
Score = 59 (25.8 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 18/78 (23%), Positives = 42/78 (53%)
Query: 412 YEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALS---RKLMFARLPAKQRITAALPNII 468
+ ++++ + FN IQ++ F L T+ N ++ A + + ++F + + A LP +
Sbjct: 2 FRSVFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEAPLPWLN 61
Query: 469 L-VLQLAPTGSGKTICAE 485
+ V+ +AP K +C++
Sbjct: 62 MKVVYMAPI---KALCSQ 76
Score = 55 (24.4 bits), Expect = 6.1e-24, Sum P(3) = 6.1e-24
Identities = 23/99 (23%), Positives = 49/99 (49%)
Query: 191 SEKIKME-LAKLLDRVPI--PVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS---- 243
SEK + L K +R+ I P++ ++ K+N L+Q + + ++ +LT D S
Sbjct: 557 SEKRTLNTLNKDPNRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTSKIFR 616
Query: 244 -AGRLSRALFEIVL--KRGWSQLAEKALKLSKMVTKRMW 279
R+++ L + V ++ ++ L + L+K ++W
Sbjct: 617 NGSRIAKWLSDFVTAQEQKFAVLLNSVI-LAKCFKCKLW 654
Score = 39 (18.8 bits), Expect = 6.1e-24, Sum P(3) = 6.1e-24
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 634 SSHGVFNFPPGVRPVPLEIQI---QGVDITNF 662
S V +FPP R L+IQ+ Q VD+ F
Sbjct: 916 SRDAVSSFPPAKR---LKIQMNKSQNVDLKEF 944
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 552 (199.4 bits), Expect = 9.4e-50, Sum P(2) = 9.4e-50
Identities = 168/619 (27%), Positives = 296/619 (47%)
Query: 501 MRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWD 560
+RAVY+API+AL Q+Y +W++KFG C D ++ +I +T EKWD
Sbjct: 62 VRAVYMAPIKALCSQQYDNWKQKFGPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKWD 121
Query: 561 ALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVARMRYI-----ASQVENK--I 612
+++RRWK + + LF++DE+H++ + G LEV+V+RM+ + A E+K +
Sbjct: 122 SMTRRWKDNCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSRMKTMHFYRQAINPESKASV 181
Query: 613 RIVALSTSLANAKDLGEWIGASSHGV--FNFPPGVRPVPLEIQIQGVDITNFEARMKAMT 670
R VA+S ++ N +D+ EW+ S RPV L + G + + K
Sbjct: 182 RFVAVSATIPNIQDVSEWLSDESGPATCLEMDESHRPVKLRKVVLGFPCGSNQNEFKFDL 241
Query: 671 KPTYTA--IMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728
Y I+Q ++KP LVF +RK + +A L KD+ + + + +
Sbjct: 242 SLNYKLANIIQTYSDQKPTLVFCSTRKGVQQSASVL----AKDA--RFIMSIDHKQRLVK 295
Query: 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH 788
+ + + + LR G+GY H G++ SD+++ F G + V +S++ V + AH
Sbjct: 296 YANSLLDAKLRDLFVYGIGYHHAGMDVSDRKITENAFTVGDLPVLFTTSTLAMGVNMPAH 355
Query: 789 LATGRKMLILT----------TLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEA 838
L + + LLQM+G AGRP D + VI+ K+ Y FL
Sbjct: 356 LVVIKSTMHYVGGACEEYSEADLLQMIGRAGRPQFDTTATAVIMTRPQTKDKYMHFLSGL 415
Query: 839 FPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQG-VSHRH 894
+ES LH L ++ NAEIV I + A+D++ TF R +NP +Y V
Sbjct: 416 DCIESSLHTNLVEHLNAEIVLHTISDVNMALDWIRSTFLYIRALKNPKHYGFPPEVDKCG 475
Query: 895 LSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKT 954
+ L EL ++ L + I M++D+++ P+ G + + Y +++ T++ FS +T
Sbjct: 476 IETKLQELCLKNLNSLASFNLITMDEDINIKPTETGKLMARYCVAFDTVKQFSM-VTGTE 534
Query: 955 KMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQ-RFSFANP---KCTDPHVKANALLQ 1010
+ L+E+++ A E++ + +R E + + L + R + P K +K N L+Q
Sbjct: 535 TLPELIEMISKAKEFSDMQLRVNERKTLNTLNKDKNRTTIRFPIEGKIKSNDMKVNCLIQ 594
Query: 1011 AHFSARHM-EGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLA--LLAMEVSQMVTQGM 1067
A + E L D K+ +A R+ + + + + + + A L A+ +++ +
Sbjct: 595 AQLGCIPIQEFGLIQDTGKIFRNAVRVSRYLTEFLCHHSKSNFAAQLNALILAKCFRAKL 654
Query: 1068 WEHDSMLL-QLPHFTKDLA 1085
WE+ + QL LA
Sbjct: 655 WENSPYISKQLERIGLSLA 673
Score = 406 (148.0 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 108/330 (32%), Positives = 176/330 (53%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGV-MRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
APTGSGKT+ E AI+R ASE +RAVY+API+AL Q+Y +W++KFG LG+
Sbjct: 34 APTGSGKTVLFELAIVRLLIEASEPWHNVRAVYMAPIKALCSQQYDNWKQKFGP-LGLKC 92
Query: 533 VELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
ELT +T +D ++ +I +T EKWD+++RRWK + + LF++DE+H++ +
Sbjct: 93 KELTGDTEIDDFFEIQDAHLIFTTAEKWDSMTRRWKDNCLLTSIRLFLVDEVHVVKDKTR 152
Query: 591 GPVLEVIVARMRYI-----ASQVENK--IRIVALSTSLANAKDLGEWIGASSHGV--FNF 641
G LEV+V+RM+ + A E+K +R VA+S ++ N +D+ EW+ S
Sbjct: 153 GATLEVVVSRMKTMHFYRQAINPESKASVRFVAVSATIPNIQDVSEWLSDESGPATCLEM 212
Query: 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTA--IMQHAKNEKPALVFVPSRKYARL 699
RPV L + G + + K Y I+Q ++KP LVF +RK +
Sbjct: 213 DESHRPVKLRKVVLGFPCGSNQNEFKFDLSLNYKLANIIQTYSDQKPTLVFCSTRKGVQQ 272
Query: 700 TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQE 759
+A L KD+ + + + + + + + + LR G+GY H G++ SD++
Sbjct: 273 SASVL----AKDA--RFIMSIDHKQRLVKYANSLLDAKLRDLFVYGIGYHHAGMDVSDRK 326
Query: 760 VVSTLFEAGKIKVCVMSSSMCWEVPLTAHL 789
+ F G + V +S++ V + AHL
Sbjct: 327 ITENAFTVGDLPVLFTTSTLAMGVNMPAHL 356
Score = 319 (117.4 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 73/180 (40%), Positives = 102/180 (56%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M DR++ E+ F G + VL +T+ LA GVN+PAH V+IK T Y GA E S D
Sbjct: 320 MDVSDRKITENAFTVGDLPVLFTTSTLAMGVNMPAHLVVIKSTMHY--VGGACEEYSEAD 377
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QM+GRAGRPQ+D+ +I+T Y+ ++ IES + L E LNAEIVL
Sbjct: 378 LLQMIGRAGRPQFDTTATAVIMTRPQTKDKYMHFLSGLDCIESSLHTNLVEHLNAEIVLH 437
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T+ + A +WI T+LY R L+NP YG PEV + ++ +L N L NL+
Sbjct: 438 TISDVNMALDWIRSTFLYIRALKNPKHYGFPPEVDKCGIETKLQELCLKNLNSLASFNLI 497
Score = 67 (28.6 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 205 VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRG 259
+ P++ ++ K+N L+Q + + ++ L D +A R+SR L E +
Sbjct: 574 IRFPIEGKIKSNDMKVNCLIQAQLGCIPIQEFGLIQDTGKIFRNAVRVSRYLTEFLCHHS 633
Query: 260 WSQLAEK--ALKLSKMVTKRMW 279
S A + AL L+K ++W
Sbjct: 634 KSNFAAQLNALILAKCFRAKLW 655
Score = 52 (23.4 bits), Expect = 9.4e-50, Sum P(2) = 9.4e-50
Identities = 17/78 (21%), Positives = 41/78 (52%)
Query: 412 YEALYQNYKLFNPIQTQVFA-VLYNTEDNVLVAALS--RKLMFARLPAKQRITAALP-NI 467
+ ++++++ FN +Q+Q VLY+ ++ V A + ++F + I A+ P +
Sbjct: 2 FRSVFKDFPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWHN 61
Query: 468 ILVLQLAPTGSGKTICAE 485
+ + +AP K +C++
Sbjct: 62 VRAVYMAPI---KALCSQ 76
Score = 37 (18.1 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 935 YYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFA 994
++Y++ +C + + + LL S S+ ++ P EEL LI+ +
Sbjct: 757 HHYVTLIVGDCDNKVVFQQKISDTLLLKSGSWSKRIEVTRSPKGEELSIHLISSEYVGLD 816
Query: 995 NPKCTDPHVKANALLQAHFS 1014
+ H LQA FS
Sbjct: 817 IQQDYSAHYSGVHGLQAEFS 836
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 360 (131.8 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
Identities = 106/314 (33%), Positives = 165/314 (52%)
Query: 470 VLQLAPTGSGKTICAEFAILR--NHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527
V+ APTGSGKT+ E AI R N ++ + + VY AP ++L +R+ DW +KF
Sbjct: 268 VVIAAPTGSGKTVVMELAICRLLNIRKDKK---FKVVYQAPTKSLCSERFRDWNQKF-HA 323
Query: 528 LGMCVVELTVETA-MDLKLLEKGQIIISTPEKWDALSRRWKQR-KYVQQVSLFIIDELHL 585
LG+ ELT +T L ++ QII++TPEKWD+++R+WK + +Q V LF+IDE+H
Sbjct: 324 LGLQCAELTGDTDHSQLGNVQNRQIIVTTPEKWDSMTRKWKDHIRLMQPVKLFLIDEVHT 383
Query: 586 IGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG--ASSHGV----F 639
+ G LE +V+RM+ I S V R VALS ++ N++D+ W+G A+S V
Sbjct: 384 LKEARGATLEAVVSRMKSIGSNV----RFVALSATIPNSEDIATWLGRNATSQHVPAHRE 439
Query: 640 NFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARL 699
+F RPV L+ + G +F A K + I+ +KP ++F +R
Sbjct: 440 HFGEEFRPVKLQKFVYGY---HFSGNNFAFDKLLNSNIIGTHSAKKPIMIFCSTRNSTVS 496
Query: 700 TAVDLM-IYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
TA +L ++S S+ L+ K + + + L+ T GV + H GL D+
Sbjct: 497 TAKELARLWSM------SSRLVRMWKGPNKPLPVKHAD-LKVTTAAGVAFHHAGLETEDR 549
Query: 759 EVVSTLFEAGKIKV 772
+V + GKI V
Sbjct: 550 HLVENGYLQGKISV 563
Score = 252 (93.8 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
Identities = 88/348 (25%), Positives = 162/348 (46%)
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLI 797
L+ T GV + H GL D+ +V + GKI V +C+ G++
Sbjct: 529 LKVTTAAGVAFHHAGLETEDRHLVENGYLQGKISV------ICY--------GCGQEYSD 574
Query: 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEI 857
L ++QM+G AGRP D+S VIL +Y++ + + VES LH L ++ NAEI
Sbjct: 575 LE-VMQMLGRAGRPQFDDSATAVILTRKERVSHYERLVSGSESVESSLHLNLIEHLNAEI 633
Query: 858 VAGVIENKQDAVDYLTWTF---RLTQNPNYYNL-QGVSHRHLSDHLSELVENTISDLEAT 913
G I++ + A +L TF RL +NP +Y L +G + ++ L + E I L+
Sbjct: 634 GLGNIKSTESAASWLAGTFLSVRLRRNPTHYRLKEGANRNDTNEMLRHICEKDIKLLQEY 693
Query: 914 RSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLP 973
+++ + + P Y M S Y I Y+T++ + K+ + +L ++ A E+ +
Sbjct: 694 -ALVDTESLKSTPFGYAM--SRYSIRYETMKTLIK-MKPKSDIAQILAIICQAEEFRDIR 749
Query: 974 IRPGEEELVRRLINHQRFSFA-NPKCTDPHVKANALLQAHFSA-------RHMEGNLKLD 1025
+ GE+ L + + + F P K + L+Q+ A + +
Sbjct: 750 FKAGEKLLYKEINRSKDIRFPIEVDIVLPAHKISLLIQSELGAVEFPSGEQFQKHRFTFQ 809
Query: 1026 QEK--VLLSASRLLQAMVDVISSNGWLSLALL-AMEVSQMVTQGMWEH 1070
QEK V +R+++ ++D ++ S+ L A+ +++ + +W+H
Sbjct: 810 QEKSTVFAHVNRVIRCIIDC-QAHLKDSVTLCNALGLARSLAARVWDH 856
Score = 201 (75.8 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 54/157 (34%), Positives = 76/157 (48%)
Query: 51 GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLA 110
G E S L++MQMLGRAGRPQ+D +I+T + +Y L++ +ES L
Sbjct: 567 GCGQEYSDLEVMQMLGRAGRPQFDDSATAVILTRKERVSHYERLVSGSESVESSLHLNLI 626
Query: 111 ELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTA 170
E LNAEI LG +++ + A +W+ T+L R+ RNP Y L E + +
Sbjct: 627 EHLNAEIGLGNIKSTESAASWLAGTFLSVRLRRNPTHYRLKEGANRNDTNEMLRHICEKD 686
Query: 171 ANVLDRNNLVKY-GRKS---GYFQSE-KIKMELAKLL 202
+L LV KS GY S I+ E K L
Sbjct: 687 IKLLQEYALVDTESLKSTPFGYAMSRYSIRYETMKTL 723
Score = 99 (39.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 386 LPEKFPP-PTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
L E F PT + LL V L + +Y L+ N+ +FN +Q++ F +Y ++DNV++AA
Sbjct: 215 LAEPFKDVPTSDRGIALLSVRELPD-NYRPLF-NFPVFNAVQSKCFHAIYKSDDNVVIAA 272
Query: 445 L--SRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAE 485
S K + L + + V+ APT K++C+E
Sbjct: 273 PTGSGKTVVMELAICRLLNIRKDKKFKVVYQAPT---KSLCSE 312
Score = 39 (18.8 bits), Expect = 6.2e-27, Sum P(2) = 6.2e-27
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 1219 VEGGKKTYTLDFMCDSYMGCDQEYS 1243
VE G + +C Y GC QEYS
Sbjct: 552 VENGYLQGKISVIC--Y-GCGQEYS 573
Score = 37 (18.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 5 DRQLVEDLFCDGHVQVL 21
DR LVE+ + G + V+
Sbjct: 548 DRHLVENGYLQGKISVI 564
Score = 37 (18.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 205 VPIPVKESLEEPSAKINVLLQTYISQLK 232
+ P++ + P+ KI++L+Q+ + ++
Sbjct: 767 IRFPIEVDIVLPAHKISLLIQSELGAVE 794
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 529 (191.3 bits), Expect = 3.1e-47, P = 3.1e-47
Identities = 102/126 (80%), Positives = 111/126 (88%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL LD
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 848
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QMLGRAGRPQYD+ GEGI+IT H ELQYYLSL+NQQLPIESQ V+KL ++LNAEIVLG
Sbjct: 849 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNAEIVLG 908
Query: 121 TVQNAK 126
VQNAK
Sbjct: 909 NVQNAK 914
Score = 476 (172.6 bits), Expect = 6.4e-44, Sum P(2) = 6.4e-44
Identities = 141/429 (32%), Positives = 210/429 (48%)
Query: 462 AALPNIILVLQLAPTGSGKTICAEFAILRN---HQRASET-GV--MRAVYIAPIEALAKQ 515
AAL +L APTG+GKT A +LR H T V + +YIAP+ +L ++
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 516 RYCDWERKFGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 572
FGK L G+ V ELT + + + + QII+ TPEKWD ++R+ +R Y
Sbjct: 551 MV----GSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYT 606
Query: 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG 632
Q V L I+DE+HL+ GPVLE +VAR + +R++ LS +L N +D+ ++
Sbjct: 607 QLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLR 666
Query: 633 AS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVF 690
+ G+F F RPVPLE G+ R + M + Y IM+HA KN+ LVF
Sbjct: 667 VDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ--VLVF 724
Query: 691 VPSRKYARLTAVDLMIYSCKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVG 747
V SRK TA + C + D FL S + + + L+ L G
Sbjct: 725 VHSRKETGKTARAIRDM-CLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 748 YLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM---------- 795
H G+ + D+ +V LF I+V V ++++ W V L AH + G ++
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 796 LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNA 855
L +LQM+G AGRP D + +++ +YY L + P+ES + L D NA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNA 903
Query: 856 EIVAGVIEN 864
EIV G ++N
Sbjct: 904 EIVLGNVQN 912
Score = 175 (66.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 69/260 (26%), Positives = 113/260 (43%)
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM 795
L+ L G H G+ + D+ +V LF I+V V ++++ W V L AH + G ++
Sbjct: 774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833
Query: 796 ----------LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHL 845
L +LQM+G AGRP D + +++ +YY L + P+ES +
Sbjct: 834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQM 893
Query: 846 HHFLHDNFNAEIVAGVIENKQDAVD--------YLTWTFRLTQNPNYYNLQG--VSHRHL 895
L D NAEIV G ++N + + + W T P L + R
Sbjct: 894 VAKLPDMLNAEIVLGNVQNAKRGLGSGSVVILCVVLWATS-TWGPPTLGLTSPILMCRCF 952
Query: 896 SDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTK 955
D LS N + L T I + + + G IAS+YYI+ T++ ++ L
Sbjct: 953 LD-LSITCLNCL--LLGTVEIYHAISVHV--TELGRIASHYYITNDTVQTYNQLLKPTLS 1007
Query: 956 MKGLLEVLASASEYAQLPIR 975
L V + +SE+ + +R
Sbjct: 1008 EIELFRVFSLSSEFKNITVR 1027
Score = 76 (31.8 bits), Expect = 6.4e-44, Sum P(2) = 6.4e-44
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 386 LPEKFPPPTELLDLQLLPVTALQNPSY-EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
+P P P + QLLPV L P Y +A ++ +K N IQ++++ T++N+L+ A
Sbjct: 447 VPALKPKPFSSEE-QLLPVEKL--PKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCA 503
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 529 (191.3 bits), Expect = 1.3e-46, Sum P(3) = 1.3e-46
Identities = 144/426 (33%), Positives = 220/426 (51%)
Query: 474 APTGSGKTICAEFAILRNHQRAS-ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
APTGSGKT+ E AI R ++ VY+API+AL QR+ DW+ KFG +G+
Sbjct: 305 APTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGP-IGLNC 363
Query: 533 VELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
ELT +T MD L ++ II++TPEKWD+++R+W+ VQ V LF+IDE+H++ +
Sbjct: 364 KELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENR 423
Query: 591 GPVLEVIVARMRYIAS---QVENK----IRIVALSTSLANAKDLGEWI--GASSHGVFNF 641
GP LEV+V+RM+ + S EN +R VA+S ++ NA+D+ EW+ G
Sbjct: 424 GPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKM 483
Query: 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKYARL 699
RPV L+ + G + + K Y +++ ++KP LVF +RK +
Sbjct: 484 DEKHRPVKLQKVVLGFPCGSNQTEFKFDLTLNYKIAGVIRTYSDQKPTLVFCATRKGVQQ 543
Query: 700 TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQE 759
A L+ D K + + ++ + I++ LR L GV Y H G+ SD++
Sbjct: 544 AASVLV------KDAKFIMAVEQKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRK 597
Query: 760 VVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLIL----------TTLLQMMGHAG 809
VV F G + V +S++ V L AHL + + T +LQM+G AG
Sbjct: 598 VVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAG 657
Query: 810 RPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAV 869
RP D + VI+ KE Y + L + VES LH L ++ NAEIV I + A+
Sbjct: 658 RPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIAL 717
Query: 870 DYLTWT 875
+++ T
Sbjct: 718 EWIRST 723
Score = 403 (146.9 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 128/498 (25%), Positives = 236/498 (47%)
Query: 612 IRIVALSTSLANAKDLGEWI--GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAM 669
+R VA+S ++ NA+D+ EW+ G RPV L+ + G + + K
Sbjct: 452 MRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKVVLGFPCGSNQTEFKFD 511
Query: 670 TKPTY--TAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVE 727
Y +++ ++KP LVF +RK + A L+ D K + + ++
Sbjct: 512 LTLNYKIAGVIRTYSDQKPTLVFCATRKGVQQAASVLV------KDAKFIMAVEQKQRLQ 565
Query: 728 PHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA 787
+ I++ LR L GV Y H G+ SD++VV F G + V +S++ V L A
Sbjct: 566 KYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPA 625
Query: 788 HLATGRKMLIL----------TTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYE 837
HL + + T +LQM+G AGRP D + VI+ KE Y + L
Sbjct: 626 HLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLAC 685
Query: 838 AFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL-QGVSHR 893
+ VES LH L ++ NAEIV I + A++++ T R +NP++Y G++
Sbjct: 686 SDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHYGFASGLNKD 745
Query: 894 HLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSK 953
+ L EL + DL + I M++D++ P+ G + ++YYI+++T++ F + ++ K
Sbjct: 746 GIEAKLQELCLKNLHDLSSLDLIRMDEDVNFKPTEAGRLMAWYYITFETVKKFCT-ISGK 804
Query: 954 TKMKGLLEVLASASEYAQLPIRPGEEELVRRLINH-QRFSFANP---KCTDPHVKANALL 1009
+ L+ +++S E+ + +R E++++ L R + P + +K N L+
Sbjct: 805 ETLLDLVTMISSCKEFVDVQLRINEKKILNTLNKDPNRVTIRFPMEGRIKTREMKINCLI 864
Query: 1010 QAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW 1068
QA ++ L D K+ + SR+ + + D ++ ++ L ++ +++ +W
Sbjct: 865 QAQLGCIPIQDFALTQDISKIFRNGSRITRWLSDFVAVQEKFAILLNSLILAKCFRCKLW 924
Query: 1069 EHDSMLLQLPHFTKDLAK 1086
E+ S+ H +K L K
Sbjct: 925 EN-SL-----HVSKQLEK 936
Score = 301 (111.0 bits), Expect = 6.2e-23, Sum P(3) = 6.2e-23
Identities = 67/151 (44%), Positives = 90/151 (59%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+ DR++VE F G + VL +T+ LA GVNLPAH V+IK T Y G + E S D
Sbjct: 591 MELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETD 648
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM+GRAGRPQ+D+ +I+T S + Y+ ++ +ES L E LNAEIVL
Sbjct: 649 ILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLH 708
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLS 151
T+ + A WI T LY R L+NP YG +
Sbjct: 709 TITDVNIALEWIRSTLLYIRALKNPSHYGFA 739
Score = 70 (29.7 bits), Expect = 6.2e-23, Sum P(3) = 6.2e-23
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 192 EKIKMELAKLLDRVPI--PVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----A 244
+KI L K +RV I P++ ++ KIN L+Q + + ++ +LT D+S
Sbjct: 830 KKILNTLNKDPNRVTIRFPMEGRIKTREMKINCLIQAQLGCIPIQDFALTQDISKIFRNG 889
Query: 245 GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMW 279
R++R L + V + + +L L+K ++W
Sbjct: 890 SRITRWLSDFVAVQEKFAILLNSLILAKCFRCKLW 924
Score = 60 (26.2 bits), Expect = 1.3e-46, Sum P(3) = 1.3e-46
Identities = 20/92 (21%), Positives = 44/92 (47%)
Query: 398 DLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALS---RKLMFARL 454
DL L + ++++ + FN IQ++ F L T+ N ++ A + + ++F
Sbjct: 259 DLDSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELA 318
Query: 455 PAKQRITAALP-NIILVLQLAPTGSGKTICAE 485
+ + LP + I ++ +AP K +C++
Sbjct: 319 ITRLLMEVPLPWSNIKIVYMAPI---KALCSQ 347
Score = 42 (19.8 bits), Expect = 1.3e-46, Sum P(3) = 1.3e-46
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQL 972
+ FS+S T KTK G L+S++ ++L
Sbjct: 1282 VTSFSAS-TEKTKTSGFGNTLSSSTRGSKL 1310
Score = 38 (18.4 bits), Expect = 3.4e-46, Sum P(3) = 3.4e-46
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 1187 LVVDDAKTNQLLAIKRV--SLQRKS---RAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQE 1241
L++ DA NQL+ ++ S+ K+ K+D + + +++ + Y+G D +
Sbjct: 1031 LIIGDAD-NQLVFKHKIMDSVLLKAGNWTKKIDVRRAFKS--EDLSINLISSEYVGLDIQ 1087
Query: 1242 YSFTV 1246
FTV
Sbjct: 1088 QKFTV 1092
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 529 (191.3 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 144/426 (33%), Positives = 220/426 (51%)
Query: 474 APTGSGKTICAEFAILRNHQRAS-ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
APTGSGKT+ E AI R ++ VY+API+AL QR+ DW+ KFG +G+
Sbjct: 305 APTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGP-IGLNC 363
Query: 533 VELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
ELT +T MD L ++ II++TPEKWD+++R+W+ VQ V LF+IDE+H++ +
Sbjct: 364 KELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENR 423
Query: 591 GPVLEVIVARMRYIAS---QVENK----IRIVALSTSLANAKDLGEWI--GASSHGVFNF 641
GP LEV+V+RM+ + S EN +R VA+S ++ NA+D+ EW+ G
Sbjct: 424 GPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKM 483
Query: 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKYARL 699
RPV L+ + G + + K Y +++ ++KP LVF +RK +
Sbjct: 484 DEKHRPVKLQKVVLGFPCGSNQTEFKFDLTLNYKIAGVIRTYSDQKPTLVFCATRKGVQQ 543
Query: 700 TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQE 759
A L+ D K + + ++ + I++ LR L GV Y H G+ SD++
Sbjct: 544 AASVLV------KDAKFIMAVEQKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRK 597
Query: 760 VVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLIL----------TTLLQMMGHAG 809
VV F G + V +S++ V L AHL + + T +LQM+G AG
Sbjct: 598 VVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAG 657
Query: 810 RPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAV 869
RP D + VI+ KE Y + L + VES LH L ++ NAEIV I + A+
Sbjct: 658 RPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIAL 717
Query: 870 DYLTWT 875
+++ T
Sbjct: 718 EWIRST 723
Score = 403 (146.9 bits), Expect = 2.1e-32, Sum P(3) = 2.1e-32
Identities = 128/498 (25%), Positives = 236/498 (47%)
Query: 612 IRIVALSTSLANAKDLGEWI--GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAM 669
+R VA+S ++ NA+D+ EW+ G RPV L+ + G + + K
Sbjct: 452 MRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKVVLGFPCGSNQTEFKFD 511
Query: 670 TKPTY--TAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVE 727
Y +++ ++KP LVF +RK + A L+ D K + + ++
Sbjct: 512 LTLNYKIAGVIRTYSDQKPTLVFCATRKGVQQAASVLV------KDAKFIMAVEQKQRLQ 565
Query: 728 PHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA 787
+ I++ LR L GV Y H G+ SD++VV F G + V +S++ V L A
Sbjct: 566 KYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPA 625
Query: 788 HLATGRKMLIL----------TTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYE 837
HL + + T +LQM+G AGRP D + VI+ KE Y + L
Sbjct: 626 HLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLAC 685
Query: 838 AFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL-QGVSHR 893
+ VES LH L ++ NAEIV I + A++++ T R +NP++Y G++
Sbjct: 686 SDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHYGFASGLNKD 745
Query: 894 HLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSK 953
+ L EL + DL + I M++D++ P+ G + ++YYI+++T++ F + ++ K
Sbjct: 746 GIEAKLQELCLKNLHDLSSLDLIRMDEDVNFKPTEAGRLMAWYYITFETVKKFCT-ISGK 804
Query: 954 TKMKGLLEVLASASEYAQLPIRPGEEELVRRLINH-QRFSFANP---KCTDPHVKANALL 1009
+ L+ +++S E+ + +R E++++ L R + P + +K N L+
Sbjct: 805 ETLLDLVTMISSCKEFVDVQLRINEKKILNTLNKDPNRVTIRFPMEGRIKTREMKINCLI 864
Query: 1010 QAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW 1068
QA ++ L D K+ + SR+ + + D ++ ++ L ++ +++ +W
Sbjct: 865 QAQLGCIPIQDFALTQDISKIFRNGSRITRWLSDFVAVQEKFAILLNSLILAKCFRCKLW 924
Query: 1069 EHDSMLLQLPHFTKDLAK 1086
E+ S+ H +K L K
Sbjct: 925 EN-SL-----HVSKQLEK 936
Score = 301 (111.0 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 67/151 (44%), Positives = 90/151 (59%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+ DR++VE F G + VL +T+ LA GVNLPAH V+IK T Y G + E S D
Sbjct: 591 MELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETD 648
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM+GRAGRPQ+D+ +I+T S + Y+ ++ +ES L E LNAEIVL
Sbjct: 649 ILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLH 708
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLS 151
T+ + A WI T LY R L+NP YG +
Sbjct: 709 TITDVNIALEWIRSTLLYIRALKNPSHYGFA 739
Score = 70 (29.7 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 192 EKIKMELAKLLDRVPI--PVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----A 244
+KI L K +RV I P++ ++ KIN L+Q + + ++ +LT D+S
Sbjct: 830 KKILNTLNKDPNRVTIRFPMEGRIKTREMKINCLIQAQLGCIPIQDFALTQDISKIFRNG 889
Query: 245 GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMW 279
R++R L + V + + +L L+K ++W
Sbjct: 890 SRITRWLSDFVAVQEKFAILLNSLILAKCFRCKLW 924
Score = 60 (26.2 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 20/92 (21%), Positives = 44/92 (47%)
Query: 398 DLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALS---RKLMFARL 454
DL L + ++++ + FN IQ++ F L T+ N ++ A + + ++F
Sbjct: 259 DLDSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELA 318
Query: 455 PAKQRITAALP-NIILVLQLAPTGSGKTICAE 485
+ + LP + I ++ +AP K +C++
Sbjct: 319 ITRLLMEVPLPWSNIKIVYMAPI---KALCSQ 347
Score = 42 (19.8 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQL 972
+ FS+S T KTK G L+S++ ++L
Sbjct: 1326 VTSFSAS-TEKTKTSGFGNTLSSSTRGSKL 1354
Score = 38 (18.4 bits), Expect = 3.8e-46, Sum P(3) = 3.8e-46
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 1187 LVVDDAKTNQLLAIKRV--SLQRKS---RAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQE 1241
L++ DA NQL+ ++ S+ K+ K+D + + +++ + Y+G D +
Sbjct: 1031 LIIGDAD-NQLVFKHKIMDSVLLKAGNWTKKIDVRRAFKS--EDLSINLISSEYVGLDIQ 1087
Query: 1242 YSFTV 1246
FTV
Sbjct: 1088 QKFTV 1092
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 458 (166.3 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 174/699 (24%), Positives = 321/699 (45%)
Query: 591 GPVLEVIVARMR---YIASQVENK-----IRIVALSTSLANAKDLGEWI--GASSHGVFN 640
GP LEV+V+RM+ +++ VEN +R VA+S ++ NA+D+ EW+ G S
Sbjct: 424 GPTLEVVVSRMKTVQFLSHAVENPRNIIPMRFVAVSATIPNAEDIAEWLSDGERSAICLK 483
Query: 641 FPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKYAR 698
RPV L + G +N + K Y +++Q ++KP LVF +RK +
Sbjct: 484 MDEKHRPVKLRKVVLGFPCSNNQTEFKFDLTLNYKIASVVQTYSDQKPTLVFCATRKGVQ 543
Query: 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
A +++ D K + + + I++ LR L GV Y H G+ SD+
Sbjct: 544 -QAASILV-----KDAKFIMTVEQKQRLHKCAYSIRDSKLRDLLIHGVAYHHAGMELSDR 597
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLIL----------TTLLQMMGHA 808
+VV F G + V +S++ V L AHL + + T +LQM+G A
Sbjct: 598 KVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRA 657
Query: 809 GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868
GRP D + VI+ KE Y + L + VES LH L ++ NAEIV I + A
Sbjct: 658 GRPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIA 717
Query: 869 VDYLTWTF---RLTQNPNYYNL-QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDL 924
++++ T R +NP++Y G++ + L EL ++DL + I M++D++
Sbjct: 718 LEWIRSTLLYIRALKNPSHYGFASGLNKDGIESKLQELCLKNLNDLSSLDLIKMDEDINF 777
Query: 925 CPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRR 984
P+ G + ++YY++++T++ F + ++ K + L+ ++AS E+ + +R E++ +
Sbjct: 778 KPTEAGRLMAWYYVTFETVKKFCT-ISGKETLSDLVTMIASCKEFLDVQLRINEKKTLNT 836
Query: 985 LINH-QRFSFANP---KCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQA 1039
L R + P K +K N L+QA ++ L D K+ + SR+ +
Sbjct: 837 LNKDPNRITIRFPMEGKIKTREMKVNCLIQAQLGCIPIQDFALTQDTSKIFRNGSRITRW 896
Query: 1040 MVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETV 1099
+ D ++ ++ L ++ +++ +WE+ S+ H +K L E G ++
Sbjct: 897 LSDFVAVQEKFAVLLNSLILAKCFRCKLWEN-SL-----HVSKQL-----EKIGITLSNA 945
Query: 1100 FXXXXXXXXXXXXXXQMSDVQLLDIAR---FCNRFPNIDM---SYKVQDSENVRAGGEDT 1153
+++L+ + R F + M Y+++ + R DT
Sbjct: 946 MVNAGLTSFKKIEETDARELELI-LNRHPPFGTQIKETVMCLPKYELEVEQIARYS--DT 1002
Query: 1154 TLQVVLERDLGGRTELGPVYSNRYPKAKEEGW-WLVVDDAKTNQLLAIKRV--SLQRKS- 1209
T +V++ L P+ + R A + + L++ DA NQL+ ++ S+ KS
Sbjct: 1003 TAEVLVTVIL---RNFEPLQTKR--TAPDSHYVTLIIGDAD-NQLIFKHKIMDSVLLKSG 1056
Query: 1210 --RAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTV 1246
K+D ++ + +++ + Y+G D + FTV
Sbjct: 1057 NWAKKIDVKRALKS--EDLSINLISSEYVGLDIQQKFTV 1093
Score = 453 (164.5 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
Identities = 117/335 (34%), Positives = 180/335 (53%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRAS-ETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
V+ APTGSGKT+ E AI R ++ VY+API+AL QR+ DW+ KFG +
Sbjct: 301 VVVCAPTGSGKTVMFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGP-I 359
Query: 529 GMCVVELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 587
G+ ELT +T MD L ++ II++TPEKWD+++R+W+ VQ V LF+IDE+H++
Sbjct: 360 GLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVK 419
Query: 588 GQG-GPVLEVIVARMR---YIASQVENK-----IRIVALSTSLANAKDLGEWI--GASSH 636
+ GP LEV+V+RM+ +++ VEN +R VA+S ++ NA+D+ EW+ G S
Sbjct: 420 DENRGPTLEVVVSRMKTVQFLSHAVENPRNIIPMRFVAVSATIPNAEDIAEWLSDGERSA 479
Query: 637 GVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSR 694
RPV L + G +N + K Y +++Q ++KP LVF +R
Sbjct: 480 ICLKMDEKHRPVKLRKVVLGFPCSNNQTEFKFDLTLNYKIASVVQTYSDQKPTLVFCATR 539
Query: 695 KYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLN 754
K + A +++ D K + + + I++ LR L GV Y H G+
Sbjct: 540 KGVQ-QAASILV-----KDAKFIMTVEQKQRLHKCAYSIRDSKLRDLLIHGVAYHHAGME 593
Query: 755 KSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL 789
SD++VV F G + V +S++ V L AHL
Sbjct: 594 LSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHL 628
Score = 307 (113.1 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 72/181 (39%), Positives = 102/181 (56%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+ DR++VE F G + VL +T+ LA GVNLPAH V+IK T Y G + E S D
Sbjct: 592 MELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETD 649
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM+GRAGRPQ+D+ +I+T S + Y+ ++ +ES L E LNAEIVL
Sbjct: 650 ILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLH 709
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T+ + A WI T LY R L+NP YG + + + ++ +L N L +L+
Sbjct: 710 TITDVNIALEWIRSTLLYIRALKNPSHYGFASGLNKDGIESKLQELCLKNLNDLSSLDLI 769
Query: 181 K 181
K
Sbjct: 770 K 770
Score = 68 (29.0 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 397 LDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALS---RKLMFAR 453
LD L VT + + ++++ + FN IQ++ F L T+ NV+V A + + +MF
Sbjct: 260 LD-SLKAVTEIP-AKFRSVFKEFPYFNYIQSKAFDDLLYTDRNVVVCAPTGSGKTVMFEL 317
Query: 454 LPAKQRITAALP-NIILVLQLAPTGSGKTICAE 485
+ + LP + I ++ +AP K +C++
Sbjct: 318 AITRLLMEVPLPWSNIKIVYMAPI---KALCSQ 347
Score = 61 (26.5 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 17/80 (21%), Positives = 38/80 (47%)
Query: 205 VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRALFEIVLKRG 259
+ P++ ++ K+N L+Q + + ++ +LT D S R++R L + V +
Sbjct: 846 IRFPMEGKIKTREMKVNCLIQAQLGCIPIQDFALTQDTSKIFRNGSRITRWLSDFVAVQE 905
Query: 260 WSQLAEKALKLSKMVTKRMW 279
+ +L L+K ++W
Sbjct: 906 KFAVLLNSLILAKCFRCKLW 925
Score = 50 (22.7 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLIN 987
I FS+ T KTK+ G L+S++ +LP + + + R++ N
Sbjct: 1284 IASFSAD-TEKTKI-GFGNTLSSSARENKLPFQESKSKFQRKMSN 1326
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 460 (167.0 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 151/536 (28%), Positives = 265/536 (49%)
Query: 474 APTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
+PTGSGKT+ E AILR + S+T + +YIAP ++L + Y +W F + + V
Sbjct: 161 SPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFPSF---VNLSV 217
Query: 533 VELTVETA-MDLKLLEKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFIIDELHLIGGQG 590
LT +T+ ++ + +K III+TPEKWD L+RRW + + V L ++DE+H I +
Sbjct: 218 GMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKR 277
Query: 591 GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH---GVFNFPPGVRP 647
G LEVI+ RM + +N IR VALS ++ N +DL W+ ++ + +F R
Sbjct: 278 GASLEVILTRMN---TMCQN-IRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQ 333
Query: 648 VPLEIQIQGVDIT-NFEARMKAMTKPTYTAIMQ-HAKNEKPALVFVPSRKYARLTAVDLM 705
V L + G + + A+ I++ HA N +P L+F P+R TA L+
Sbjct: 334 VQLTKFVYGYSFNCKNDFQKDAIYNSKLIEIIEKHADN-RPVLIFCPTRASTISTAKFLL 392
Query: 706 IYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765
+K C+ P I+ E M + G+ + H G++ D+ V F
Sbjct: 393 NNHIFSKSKKR----CNHN---PSDKILNECMQQ-----GIAFHHAGISLEDRTAVEKEF 440
Query: 766 EAGKIKVCVMSSSMCWEVPLTAHLAT--GRKMLILTTL--------LQMMGHAGRPLLDN 815
AG I + +S++ V L A+L G K + + LQM+G AGRP +
Sbjct: 441 LAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFET 500
Query: 816 SEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWT 875
VI+ + K+ Y+ ++ +ES LH L ++ AE + + + AV++L T
Sbjct: 501 HGCAVIMTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNT 560
Query: 876 F---RLTQNPNYYNLQG--VSHRHLSD-HLSELVENTISDLEATRSIIMEDDMDLCPSNY 929
F R +NP Y VS + D +++ + + L + I + + + + Y
Sbjct: 561 FFYVRFGKNPAAYQEVNRYVSFHSVEDSQINQFCQYLLDTLVKVKIIDISNG-EYKSTAY 619
Query: 930 GMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRL 985
G + +YIS+++++ F ++ ++G+L +LA++ E++ + +R E++L + +
Sbjct: 620 GNAMTRHYISFESMKQFINA-KKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEI 674
Score = 278 (102.9 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 62/144 (43%), Positives = 87/144 (60%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR VE F G + +L ST+ LA GVNLPA+ VIIKGT+ +N + E S LD++QM
Sbjct: 432 DRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSSE--IQEYSDLDVLQM 489
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ++++G +I+T Q Y +L++ +ES L E L AE L TV +
Sbjct: 490 IGRAGRPQFETHGCAVIMTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYS 549
Query: 125 AKEACNWIEYTYLYTRMLRNPVLY 148
+ A NW+ T+ Y R +NP Y
Sbjct: 550 IETAVNWLRNTFFYVRFGKNPAAY 573
Score = 62 (26.9 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
Identities = 20/85 (23%), Positives = 44/85 (51%)
Query: 405 TALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAAL--SRKLMFARLPAKQRI-- 460
T + S+ +++ + FN +Q++ F +Y + +N ++++ S K + L + I
Sbjct: 123 TTILPDSFRGVFK-FTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKE 181
Query: 461 TAALPNIILVLQLAPTGSGKTICAE 485
T + N ++ +APT K++C E
Sbjct: 182 TNSDTNNTKIIYIAPT---KSLCYE 203
Score = 49 (22.3 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 20/87 (22%), Positives = 40/87 (45%)
Query: 382 QHLILP-EKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNV 440
QHL L E EL+D + L V LQ+P + +++ I ++ + ++
Sbjct: 873 QHLSLDIETEKSSGELIDFRRLQVNKLQSP------RGFRISAKISPKLEKIEFSIHCQE 926
Query: 441 LVAALSRKLMFARLPAKQRITAALPNI 467
+A L + ++++ + +A PNI
Sbjct: 927 -IAGLGKTIVYSTDHLASQFSAKTPNI 952
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 445 (161.7 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
Identities = 112/331 (33%), Positives = 179/331 (54%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGV-MRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
APTGSGKT+ E AI R + ++ VY+API+AL QR+ DW+ KFG +G+
Sbjct: 303 APTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGP-IGLNC 361
Query: 533 VELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
ELT +T MD L ++ II++TPEKWD+++R+W+ VQ V LF+IDE+H++ +
Sbjct: 362 KELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENR 421
Query: 591 GPVLEVIVARMRYIAS---QVENK-----IRIVALSTSLANAKDLGEWI--GASSHGVFN 640
GP LEV+V+RM+ + S ++N +R VA+S ++ NA+D+ EW+ G
Sbjct: 422 GPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK 481
Query: 641 FPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKYAR 698
RPV L+ + G ++ + K Y +++Q ++KP LVF +RK +
Sbjct: 482 MDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQ 541
Query: 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
A L+ D K + + ++ + +++ LR L+ G Y H G+ SD+
Sbjct: 542 QAASVLV------KDAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDR 595
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL 789
+VV F G + V +S++ V L AHL
Sbjct: 596 KVVEGAFTVGDLPVLFTTSTLAMGVNLPAHL 626
Score = 420 (152.9 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 136/528 (25%), Positives = 250/528 (47%)
Query: 591 GPVLEVIVARMRYIAS---QVENK-----IRIVALSTSLANAKDLGEWI--GASSHGVFN 640
GP LEV+V+RM+ + S ++N +R VA+S ++ NA+D+ EW+ G
Sbjct: 422 GPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK 481
Query: 641 FPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKYAR 698
RPV L+ + G ++ + K Y +++Q ++KP LVF +RK +
Sbjct: 482 MDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQ 541
Query: 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
A L+ D K + + ++ + +++ LR L+ G Y H G+ SD+
Sbjct: 542 QAASVLV------KDAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDR 595
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLIL----------TTLLQMMGHA 808
+VV F G + V +S++ V L AHL + + T +LQM+G A
Sbjct: 596 KVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRA 655
Query: 809 GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868
GRP D + VI+ ++ Y + L VES LH L ++ NAEIV I + A
Sbjct: 656 GRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIA 715
Query: 869 VDYLTWTF---RLTQNPNYYNL-QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDL 924
V+++ T R +NP++Y G++ + L EL ++DL + I M++ ++
Sbjct: 716 VEWIRSTLLYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDEGVNF 775
Query: 925 CPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRR 984
P+ G + ++YYI+++T++ F + ++ K + L+ ++A E+ + +R E++ +
Sbjct: 776 KPTEAGRLMAWYYITFETVKKFYT-ISGKETLSDLVTLIAGCKEFLDIQLRINEKKTLNT 834
Query: 985 LINH-QRFSFANP---KCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQA 1039
L R + P + +K N L+QA ++ L D K+ SR+ +
Sbjct: 835 LNKDPNRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRW 894
Query: 1040 MVDVISSNGWLSLALL-AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAK 1086
+ D +++ LL ++ +++ +WE+ S+ H +K L K
Sbjct: 895 LSDFVAAQEKKFAVLLNSLILAKCFRCKLWEN-SL-----HVSKQLEK 936
Score = 305 (112.4 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 72/181 (39%), Positives = 102/181 (56%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+ DR++VE F G + VL +T+ LA GVNLPAH V+IK T Y G + E S D
Sbjct: 590 MELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETD 647
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM+GRAGRPQ+D+ +I+T S Y+ ++ + +ES L E LNAEIVL
Sbjct: 648 ILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLH 707
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T+ + A WI T LY R L+NP YG + + + ++ +L N L +L+
Sbjct: 708 TITDVNIAVEWIRSTLLYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLI 767
Query: 181 K 181
K
Sbjct: 768 K 768
Score = 61 (26.5 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLIN-----HQR--FSFAN 995
+ FS+ T KTK+ G L+S++ ++LP++ + + R + N H+ S +N
Sbjct: 1281 VTSFSTD-TEKTKISGFGNTLSSSTRGSKLPLQESKSKFQREMSNSFVSSHEMSDISLSN 1339
Query: 996 ---PKCTD------PHVKANALLQAHFSARHMEGNLKLDQEK 1028
PK + P NA++ HF R + NL + EK
Sbjct: 1340 SAMPKFSASSMTKLPQQAGNAVI-VHFQERKPQ-NLSPEIEK 1379
Score = 58 (25.5 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 17/78 (21%), Positives = 41/78 (52%)
Query: 412 YEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALS---RKLMFARLPAKQRITAALPNI- 467
+ ++++ + FN IQ++ F L T+ N ++ A + + ++F + + LP +
Sbjct: 271 FRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLN 330
Query: 468 ILVLQLAPTGSGKTICAE 485
I ++ +AP K +C++
Sbjct: 331 IKIVYMAPI---KALCSQ 345
Score = 53 (23.7 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 17/82 (20%), Positives = 41/82 (50%)
Query: 205 VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRALFEIVL--K 257
+ P++ ++ K+N L+Q + + ++ +LT D + R++R L + V +
Sbjct: 844 IRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQE 903
Query: 258 RGWSQLAEKALKLSKMVTKRMW 279
+ ++ L +L L+K ++W
Sbjct: 904 KKFAVLLN-SLILAKCFRCKLW 924
>RGD|1561120 [details] [associations]
symbol:Snrnp200 "small nuclear ribonucleoprotein 200 (U5)"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005682 "U5
snRNP" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] RGD:1561120
GO:GO:0008380 GO:GO:0005682 GO:GO:0071013 InterPro:IPR004179
Pfam:PF02889 eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0008026
IPI:IPI00562876 EMBL:BC099211 UniGene:Rn.76239
ProteinModelPortal:Q4KLH1 SMR:Q4KLH1 IntAct:Q4KLH1 STRING:Q4KLH1
UCSC:RGD:1561120 InParanoid:Q4KLH1 ArrayExpress:Q4KLH1
Genevestigator:Q4KLH1 Uniprot:Q4KLH1
Length = 151
Score = 403 (146.9 bits), Expect = 3.0e-36, P = 3.0e-36
Identities = 75/137 (54%), Positives = 104/137 (75%)
Query: 1115 QMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYS 1174
Q++D Q+ D+ARFCNR+PNI++SY+V D +++R+GG L V LER+ GPV +
Sbjct: 13 QLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVL-VQLERE---EEVTGPVIA 68
Query: 1175 NRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDS 1234
+P+ +EEGWW+V+ DAK+N L++IKR++LQ+K++ KLDF AP GG YTL FM D+
Sbjct: 69 PLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGGHN-YTLYFMSDA 127
Query: 1235 YMGCDQEYSFTVDVKEA 1251
YMGCDQEY F+VDVKEA
Sbjct: 128 YMGCDQEYKFSVDVKEA 144
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 420 (152.9 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 136/528 (25%), Positives = 250/528 (47%)
Query: 591 GPVLEVIVARMRYIAS---QVENK-----IRIVALSTSLANAKDLGEWI--GASSHGVFN 640
GP LEV+V+RM+ + S ++N +R VA+S ++ NA+D+ EW+ G
Sbjct: 101 GPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK 160
Query: 641 FPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKYAR 698
RPV L+ + G ++ + K Y +++Q ++KP LVF +RK +
Sbjct: 161 MDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQ 220
Query: 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
A L+ D K + + ++ + +++ LR L+ G Y H G+ SD+
Sbjct: 221 QAASVLV------KDAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDR 274
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLIL----------TTLLQMMGHA 808
+VV F G + V +S++ V L AHL + + T +LQM+G A
Sbjct: 275 KVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRA 334
Query: 809 GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868
GRP D + VI+ ++ Y + L VES LH L ++ NAEIV I + A
Sbjct: 335 GRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIA 394
Query: 869 VDYLTWTF---RLTQNPNYYNL-QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDL 924
V+++ T R +NP++Y G++ + L EL ++DL + I M++ ++
Sbjct: 395 VEWIRSTLLYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDEGVNF 454
Query: 925 CPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRR 984
P+ G + ++YYI+++T++ F + ++ K + L+ ++A E+ + +R E++ +
Sbjct: 455 KPTEAGRLMAWYYITFETVKKFYT-ISGKETLSDLVTLIAGCKEFLDIQLRINEKKTLNT 513
Query: 985 LINH-QRFSFANP---KCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQA 1039
L R + P + +K N L+QA ++ L D K+ SR+ +
Sbjct: 514 LNKDPNRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRW 573
Query: 1040 MVDVISSNGWLSLALL-AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAK 1086
+ D +++ LL ++ +++ +WE+ S+ H +K L K
Sbjct: 574 LSDFVAAQEKKFAVLLNSLILAKCFRCKLWEN-SL-----HVSKQLEK 615
Score = 407 (148.3 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 100/303 (33%), Positives = 165/303 (54%)
Query: 501 MRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD-LKLLEKGQIIISTPEKW 559
++ VY+API+AL QR+ DW+ KFG +G+ ELT +T MD L ++ II++TPEKW
Sbjct: 10 IKIVYMAPIKALCSQRFDDWKEKFGP-IGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKW 68
Query: 560 DALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVARMRYIAS---QVENK---- 611
D+++R+W+ VQ V LF+IDE+H++ + GP LEV+V+RM+ + S ++N
Sbjct: 69 DSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAI 128
Query: 612 -IRIVALSTSLANAKDLGEWI--GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKA 668
+R VA+S ++ NA+D+ EW+ G RPV L+ + G ++ + K
Sbjct: 129 PMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKF 188
Query: 669 MTKPTY--TAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV 726
Y +++Q ++KP LVF +RK + A L+ D K + + +
Sbjct: 189 DLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLV------KDAKFIMTVEQKQRL 242
Query: 727 EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT 786
+ + +++ LR L+ G Y H G+ SD++VV F G + V +S++ V L
Sbjct: 243 QKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLP 302
Query: 787 AHL 789
AHL
Sbjct: 303 AHL 305
Score = 305 (112.4 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 72/181 (39%), Positives = 102/181 (56%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+ DR++VE F G + VL +T+ LA GVNLPAH V+IK T Y G + E S D
Sbjct: 269 MELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETD 326
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM+GRAGRPQ+D+ +I+T S Y+ ++ + +ES L E LNAEIVL
Sbjct: 327 ILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLH 386
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T+ + A WI T LY R L+NP YG + + + ++ +L N L +L+
Sbjct: 387 TITDVNIAVEWIRSTLLYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLI 446
Query: 181 K 181
K
Sbjct: 447 K 447
Score = 61 (26.5 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLIN-----HQR--FSFAN 995
+ FS+ T KTK+ G L+S++ ++LP++ + + R + N H+ S +N
Sbjct: 960 VTSFSTD-TEKTKISGFGNTLSSSTRGSKLPLQESKSKFQREMSNSFVSSHEMSDISLSN 1018
Query: 996 ---PKCTD------PHVKANALLQAHFSARHMEGNLKLDQEK 1028
PK + P NA++ HF R + NL + EK
Sbjct: 1019 SAMPKFSASSMTKLPQQAGNAVI-VHFQERKPQ-NLSPEIEK 1058
Score = 53 (23.7 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 17/82 (20%), Positives = 41/82 (50%)
Query: 205 VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGRLSRALFEIVL--K 257
+ P++ ++ K+N L+Q + + ++ +LT D + R++R L + V +
Sbjct: 523 IRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQE 582
Query: 258 RGWSQLAEKALKLSKMVTKRMW 279
+ ++ L +L L+K ++W
Sbjct: 583 KKFAVLLN-SLILAKCFRCKLW 603
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 375 (137.1 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 106/339 (31%), Positives = 178/339 (52%)
Query: 474 APTGSGKTICAEFAILRNHQRASET--------GVMRAVYIAPIEALAKQRYCDWERKFG 525
APTGSGKT+ E ILR ++ G ++ VYI+P +AL +++ DW +KF
Sbjct: 47 APTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFN 106
Query: 526 KELGMCVVELTVET-AMDLKLLEKGQIIISTPEKWDALSRRWKQRK----YVQQVSLFII 580
G+ +ELT + K ++ II++TPEK+DA+SR ++ + ++L +I
Sbjct: 107 S-WGISCLELTGDNETYSTKNIQDADIILTTPEKFDAVSR-YRVTSGGLGFFSDIALVLI 164
Query: 581 DELHLIGGQGGPVLEVIVARMRYIASQVENK------IRIVALSTSLANAKDLGEWIGAS 634
DE+HL+ G LE IV+R++ ++S E + +R++A+S ++ N +DL EW+
Sbjct: 165 DEVHLLNDPRGAALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPNIEDLAEWLKVP 224
Query: 635 SHGVFNFPPGVRPVPLEIQIQGVDITNFEARM-KAMTKPTYTAIMQHAKNEKPALVFVPS 693
+ G+ F +RPV L ++ G + K + Y +MQ++K K ALVF +
Sbjct: 225 TAGIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYDILMQYSKG-KSALVFCST 283
Query: 694 RKYARLTAVDL----MIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYL 749
RK A+ A L M Y + KS L +E P S ++ +++ + GVGY
Sbjct: 284 RKGAQEAAQKLAQTAMTYGYSNPFIKSREQLERLREASPMCS---DKQMQSYILQGVGYH 340
Query: 750 HEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH 788
+ GL + D+ +V LF G I+V ++++ + L AH
Sbjct: 341 NGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAH 379
Score = 327 (120.2 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
Identities = 110/406 (27%), Positives = 193/406 (47%)
Query: 597 IVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQG 656
I++ + S +R++A+S ++ N +DL EW+ + G+ F +RPV L ++ G
Sbjct: 187 ILSSNHELRSSTLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFG 246
Query: 657 VDITNFEARM-KAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDL----MIYSCKD 711
+ K + Y +MQ++K K ALVF +RK A+ A L M Y +
Sbjct: 247 YAAAKNDFLFEKRLQNYIYDILMQYSKG-KSALVFCSTRKGAQEAAQKLAQTAMTYGYSN 305
Query: 712 SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIK 771
KS L +E P S ++ +++ + GVGY + GL + D+ +V LF G I+
Sbjct: 306 PFIKSREQLERLREASPMCS---DKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQ 362
Query: 772 VCVMSSSMCWEVPLTAHLAT-----------GRKMLI-LTTLLQMMGHAGRPLLDNSEKC 819
V ++++ + L AH G M +TLLQM G AGRP D++
Sbjct: 363 VICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMV 422
Query: 820 VILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF--- 876
+I+ Y+ L VES L L ++ AEIV I + A++++ ++
Sbjct: 423 IIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYV 482
Query: 877 RLTQNP-NYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDD-MDLCPSNYGMIAS 934
R+ +NP NY +G+ + HL EL I++L + I + D L P G + +
Sbjct: 483 RMKKNPENYAIKKGIPKDRVEKHLQELCLQKINELSQYQMIWTDTDGFVLKPEEPGRLMT 542
Query: 935 YYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEE 980
YY+ ++T++ ++ TS + + L ++ A E + + +R E++
Sbjct: 543 KYYLKFETMKYIINTPTSYS-LDEALHIVCHAEEISWIQLRRNEKK 587
Score = 327 (120.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 88/264 (33%), Positives = 133/264 (50%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR LVE LF +G +QV+ +T LA G+NLPAHTV+IK TQ +N EKG + E ++QM
Sbjct: 348 DRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQM 407
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
GRAGRP +D G II+T + Y +L+N +ESQ + L E L AEIV T+ +
Sbjct: 408 SGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISD 467
Query: 125 AKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVL--------DR 176
A W++ +YLY RM +NP Y + + + + + +L N L D
Sbjct: 468 ITRAIEWMKCSYLYVRMKKNPENYAIKKGIPKDRVEKHLQELCLQKINELSQYQMIWTDT 527
Query: 177 NNLVKYGRKSGYFQSEK-IKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEG 235
+ V + G ++ +K E K + + P SL+E + + QL+
Sbjct: 528 DGFVLKPEEPGRLMTKYYLKFETMKYI--INTPTSYSLDEALHIVCHAEEISWIQLRRNE 585
Query: 236 LSLTSDMSAGRLSRALFEIVLKRG 259
+D++A + R F I +G
Sbjct: 586 KKTLNDVNADKEGRLRFHINDNKG 609
Score = 51 (23.0 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 6/27 (22%), Positives = 21/27 (77%)
Query: 418 NYKLFNPIQTQVFAVLYNTEDNVLVAA 444
+++ FN +Q++ F + ++++ N++++A
Sbjct: 21 SFRYFNSLQSECFPLCFHSDINMIISA 47
Score = 38 (18.4 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 354 EYFLLKKQYTEEDHSLNFTVPIYEPL 379
EYF+ KK Y S +Y+ L
Sbjct: 661 EYFIYKKNYKGTLSSTLLAKSLYQKL 686
>UNIPROTKB|H9L1I7 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035545 OMA:PRKERIM Uniprot:H9L1I7
Length = 771
Score = 335 (123.0 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 98/269 (36%), Positives = 139/269 (51%)
Query: 462 AALPNIILVLQLAPTGSGKTICAEFAILRN---HQRASET-GV--MRAVYIAPIEALAKQ 515
AAL + +L APTG+GKT A +LR H T V + +YIAP+ +L ++
Sbjct: 491 AALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIYIAPMRSLVQE 550
Query: 516 RYCDWERKFGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 572
FGK L G+ V ELT + + + + QII+ TPEKWD ++R+ +R Y
Sbjct: 551 MV----GSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYT 606
Query: 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG 632
Q V L I+DE+HL+ GPVLE +VAR + +R+V LS +L N +D+ ++
Sbjct: 607 QLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVATFLR 666
Query: 633 AS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVF 690
+ G+F F RPVPLE G+ R + M + Y IM+HA KN+ LVF
Sbjct: 667 VDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ--VLVF 724
Query: 691 VPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
V SRK TA + C + D FL
Sbjct: 725 VHSRKETGKTARAIRDM-CLEKDTLGLFL 752
Score = 61 (26.5 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 355 YFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEA 414
+F+ K+ D S YE + L P+ F +L+ ++ LP A +A
Sbjct: 421 HFMANKRCQLPDGSFRRQRKGYEEVHVPAL-KPKPFGSEEQLVSVEKLPKYA------QA 473
Query: 415 LYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
++ +K N IQ++++ +++N+L+ A
Sbjct: 474 GFEGFKTLNRIQSKLYRAALESDENLLLCA 503
>UNIPROTKB|H9L353 [details] [associations]
symbol:H9L353 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:AADN02064072
Ensembl:ENSGALT00000036127 OMA:CTERLTE Uniprot:H9L353
Length = 98
Score = 308 (113.5 bits), Expect = 4.2e-26, P = 4.2e-26
Identities = 61/90 (67%), Positives = 70/90 (77%)
Query: 502 RAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDA 561
R VYI P+EALA+Q + DW KF + L VV LT ET+ DLKLL KG IIISTPEKWD
Sbjct: 9 RCVYITPMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDI 68
Query: 562 LSRRWKQRKYVQQVSLFIIDELHLIGGQGG 591
LSRRWKQRK VQ V+LFI+DE+HLIGG+ G
Sbjct: 69 LSRRWKQRKNVQNVNLFIVDEVHLIGGENG 98
>UNIPROTKB|D4A4G4 [details] [associations]
symbol:Hfm1 "Protein Hfm1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 IPI:IPI00388911 Ensembl:ENSRNOT00000033855
Uniprot:D4A4G4
Length = 410
Score = 254 (94.5 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 52/110 (47%), Positives = 74/110 (67%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGV-MRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
APTGSGKT+ E AI R A + M+ VY+API+AL QR+ DW+ KFG +G+
Sbjct: 302 APTGSGKTVVFELAITRLLMEAPLPWLNMKVVYMAPIKALCSQRFDDWKEKFGP-IGLTC 360
Query: 533 VELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIID 581
ELT +T MD L ++ II++TPEKWD+++R+W+ ++Q V LF+ID
Sbjct: 361 KELTGDTVMDDLFEIQHANIIMTTPEKWDSMTRKWRDNSFIQLVRLFLID 410
>GENEDB_PFALCIPARUM|PF13_0102 [details] [associations]
symbol:PF13_0102 "DNAJ-like Sec63 homologue"
species:5833 "Plasmodium falciparum" [GO:0030176 "integral to
endoplasmic reticulum membrane" evidence=ISS] [GO:0005784 "Sec61
translocon complex" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] InterPro:IPR027137 InterPro:IPR001623
InterPro:IPR018253 Pfam:PF00226 GO:GO:0006457 GO:GO:0030176
Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271 SUPFAM:SSF46565
PROSITE:PS00636 PROSITE:PS50076 GO:GO:0005784 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 EMBL:AL844509 HSSP:P08622 GO:GO:0045047
KO:K09540 PANTHER:PTHR24075 RefSeq:XP_001349924.1
ProteinModelPortal:Q8IEC8 IntAct:Q8IEC8 MINT:MINT-1606227
PRIDE:Q8IEC8 EnsemblProtists:PF13_0102:mRNA GeneID:814078
KEGG:pfa:PF13_0102 EuPathDB:PlasmoDB:PF3D7_1318800
HOGENOM:HOG000280883 OMA:RIWERIG ProtClustDB:CLSZ2429140
Uniprot:Q8IEC8
Length = 651
Score = 269 (99.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 75/314 (23%), Positives = 151/314 (48%)
Query: 938 ISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEE----LVRRLINHQRFSF 993
+ +T++ + ++ ++ K E+LA+ +E + ++ +E+ L+ LI ++ +F
Sbjct: 252 VKIETLQYLTYTINENSRSKSFPEMLAATAESRDIEMKKDDEQYIKTLMEELIEPKKRTF 311
Query: 994 ANPKCTDPHVKANALLQAHFSARH--MEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLS 1051
P T K L+ AH RH + +LK D E +L + + +M+++ W
Sbjct: 312 KIPVIT----KNYFLILAHMQRRHDLLSEDLKKDLEHILKFSLLITHSMIEISILRDWFL 367
Query: 1052 LALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGR-SIETVFXXXXXXXXXX 1110
A A+ + + Q +S LLQ+PHF +++ + + G+ S++ V
Sbjct: 368 TAQSALTFRRCLIQAFEAKNSSLLQIPHFDENIVRHVHK--GKFSVKEVLDFVHQDHENR 425
Query: 1111 XXXXQMSDVQLLDIARFCNRFPNIDMS-YKVQDSENVRAGGEDTTLQVVLER-DLGGRTE 1168
M+ Q+LD+ FCN P+I M+ + V + E G+ ++ V ++R +L
Sbjct: 426 KGLVDMNPDQILDVKSFCNTIPDIKMTAHIVVEDETHIVKGDVASVYVQIDRSNLKENEA 485
Query: 1169 LGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRV-SLQRKSRAKLDFAAPVEGGKKTYT 1227
G +++ +P+ K E WW++ +++L V + ++ KL F + G + +
Sbjct: 486 AGYIHAPYFPQPKFEEWWIIATYKNDDRILKYVHVKNCEKIIEEKLQFLVD-KVGNLSVS 544
Query: 1228 LDFMCDSYMGCDQE 1241
+ +CDSY GCDQ+
Sbjct: 545 VFALCDSYFGCDQK 558
Score = 39 (18.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 163 ITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLL 202
IT + + + N KYG G K+ + L KLL
Sbjct: 174 ITKAYQALTDEISKENYEKYGNPDGPGMM-KVGIGLPKLL 212
>UNIPROTKB|Q8IEC8 [details] [associations]
symbol:PF13_0102 "DnaJ/SEC63 protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005784 "Sec61
translocon complex" evidence=ISS] [GO:0030176 "integral to
endoplasmic reticulum membrane" evidence=ISS] [GO:0045047 "protein
targeting to ER" evidence=ISS] InterPro:IPR027137
InterPro:IPR001623 InterPro:IPR018253 Pfam:PF00226 GO:GO:0006457
GO:GO:0030176 Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271
SUPFAM:SSF46565 PROSITE:PS00636 PROSITE:PS50076 GO:GO:0005784
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 EMBL:AL844509
HSSP:P08622 GO:GO:0045047 KO:K09540 PANTHER:PTHR24075
RefSeq:XP_001349924.1 ProteinModelPortal:Q8IEC8 IntAct:Q8IEC8
MINT:MINT-1606227 PRIDE:Q8IEC8 EnsemblProtists:PF13_0102:mRNA
GeneID:814078 KEGG:pfa:PF13_0102 EuPathDB:PlasmoDB:PF3D7_1318800
HOGENOM:HOG000280883 OMA:RIWERIG ProtClustDB:CLSZ2429140
Uniprot:Q8IEC8
Length = 651
Score = 269 (99.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 75/314 (23%), Positives = 151/314 (48%)
Query: 938 ISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEE----LVRRLINHQRFSF 993
+ +T++ + ++ ++ K E+LA+ +E + ++ +E+ L+ LI ++ +F
Sbjct: 252 VKIETLQYLTYTINENSRSKSFPEMLAATAESRDIEMKKDDEQYIKTLMEELIEPKKRTF 311
Query: 994 ANPKCTDPHVKANALLQAHFSARH--MEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLS 1051
P T K L+ AH RH + +LK D E +L + + +M+++ W
Sbjct: 312 KIPVIT----KNYFLILAHMQRRHDLLSEDLKKDLEHILKFSLLITHSMIEISILRDWFL 367
Query: 1052 LALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGR-SIETVFXXXXXXXXXX 1110
A A+ + + Q +S LLQ+PHF +++ + + G+ S++ V
Sbjct: 368 TAQSALTFRRCLIQAFEAKNSSLLQIPHFDENIVRHVHK--GKFSVKEVLDFVHQDHENR 425
Query: 1111 XXXXQMSDVQLLDIARFCNRFPNIDMS-YKVQDSENVRAGGEDTTLQVVLER-DLGGRTE 1168
M+ Q+LD+ FCN P+I M+ + V + E G+ ++ V ++R +L
Sbjct: 426 KGLVDMNPDQILDVKSFCNTIPDIKMTAHIVVEDETHIVKGDVASVYVQIDRSNLKENEA 485
Query: 1169 LGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRV-SLQRKSRAKLDFAAPVEGGKKTYT 1227
G +++ +P+ K E WW++ +++L V + ++ KL F + G + +
Sbjct: 486 AGYIHAPYFPQPKFEEWWIIATYKNDDRILKYVHVKNCEKIIEEKLQFLVD-KVGNLSVS 544
Query: 1228 LDFMCDSYMGCDQE 1241
+ +CDSY GCDQ+
Sbjct: 545 VFALCDSYFGCDQK 558
Score = 39 (18.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 163 ITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLL 202
IT + + + N KYG G K+ + L KLL
Sbjct: 174 ITKAYQALTDEISKENYEKYGNPDGPGMM-KVGIGLPKLL 212
>UNIPROTKB|E1C287 [details] [associations]
symbol:E1C287 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00550000074822 EMBL:AADN02012856
IPI:IPI00587427 Ensembl:ENSGALT00000009827 OMA:HAVKDES
Uniprot:E1C287
Length = 177
Score = 213 (80.0 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 53/152 (34%), Positives = 82/152 (53%)
Query: 557 EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVARMRYIASQV----ENK 611
EKWD+++RRWK VQ V LF+IDE+H+I + G LEV+V+RM+ + S + EN
Sbjct: 2 EKWDSMTRRWKDNSIVQLVRLFLIDEVHVIKDESRGATLEVVVSRMKTVQSSLWRLSENH 61
Query: 612 ----IRIVALSTSLANAKDLGEWI--GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEAR 665
+R VA+S ++ NA+D+ EW+ G RPV L + G ++ +
Sbjct: 62 DVPPLRFVAVSATIPNAEDIAEWLSDGKMPAVCLKVDEDQRPVKLRKIVLGFPCSDSQTE 121
Query: 666 MKAMTKPTY--TAIMQHAKNEKPALVFVPSRK 695
K Y +++Q ++KP LVF +RK
Sbjct: 122 FKFDLTLNYKIASVIQAYSDQKPVLVFCATRK 153
>UNIPROTKB|C9JAQ9 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR004179 Pfam:PF02889
HOGENOM:HOG000157749 GO:GO:0008026 EMBL:AC021188 HGNC:HGNC:30859
ChiTaRS:SNRNP200 IPI:IPI01018841 ProteinModelPortal:C9JAQ9
SMR:C9JAQ9 STRING:C9JAQ9 Ensembl:ENST00000349783
ArrayExpress:C9JAQ9 Bgee:C9JAQ9 Uniprot:C9JAQ9
Length = 625
Score = 205 (77.2 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 1191 DAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKE 1250
DAK+N L++IKR++LQ+K++ KLDF AP G YTL FM D+YMGCDQEY F+VDVKE
Sbjct: 559 DAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHN-YTLYFMSDAYMGCDQEYKFSVDVKE 617
Query: 1251 A 1251
A
Sbjct: 618 A 618
Score = 75 (31.5 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 400 QLLPVTALQNPSY-EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAA 444
QLLPV L P Y +A ++ +K N IQ++++ T++N+L+ A
Sbjct: 460 QLLPVEKL--PKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCA 503
Score = 48 (22.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 32/140 (22%), Positives = 59/140 (42%)
Query: 862 IENKQDAVD--Y-LTWTFRLTQNPNYYNLQGVSHRHLSDHLSE----LVENTIS-DLEAT 913
I+N D +D Y + F + ++ G SD E +V T+S +L A+
Sbjct: 188 IQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTLSANLVAS 247
Query: 914 RSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLP 973
++ DL P + +++ + + ++ S+ K +LE+L +AS+
Sbjct: 248 GELMSSKKKDLHPRDIDA----FWLQRQLSRFYDDAIVSQKKADEVLEILKTASDD---- 299
Query: 974 IRPGEEELVRRLINHQRFSF 993
R E +LV L+ F F
Sbjct: 300 -RECENQLVL-LLGFNTFDF 317
Score = 40 (19.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 21/110 (19%), Positives = 44/110 (40%)
Query: 874 WTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIA 933
W R Q +Y+ VS + +D + E+++ D E +++ + +
Sbjct: 267 WLQR--QLSRFYDDAIVSQKK-ADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQ 323
Query: 934 SYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVR 983
I Y T+ + S K ++ G +E S++ +E+L+R
Sbjct: 324 HRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLHETEKEDLIR 373
Score = 38 (18.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 691 VPSRKY-ARL-TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSI 732
+ S+ Y A L T +L++ + + + + L+C +E+ H+++
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM 527
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 231 (86.4 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 97/411 (23%), Positives = 178/411 (43%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE +L+ + +M I P A+ +++ FG EL
Sbjct: 314 LIYSL-PTSGGKTLVAEILMLQELLCRQKDVLM----ILPYVAIVQEKISSLS-SFGIEL 367
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
G V E +K EK + I+T EK +L + + + L ++DELH+I
Sbjct: 368 GFFVEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMI 427
Query: 587 G-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPP-- 643
G G G +LE+ +A++ Y + + I+ +S +L N +DL ++ A + F P
Sbjct: 428 GEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAEYY-TSQFRPVE 482
Query: 644 -----GVRPVPLEIQIQGVD-IT-------NFEARMKAMTKPTYTAIMQHAKNEKPALVF 690
V E+ Q D +T + +K M A++ LVF
Sbjct: 483 LKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNYSCLVF 542
Query: 691 VPSRKYARLTAVDLMIYSCKD----SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGV 746
PS+K A L + KD +++ ++ S + + + + +L+ T+ G+
Sbjct: 543 CPSKKNCENVAEMLCKFLSKDYLNHREKEKCEVIKSLRNIG-NGKVCP--VLKRTVPFGI 599
Query: 747 GYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL---- 802
Y H GL +++++ + G + + +S++ V L A R + T L
Sbjct: 600 AYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQ 659
Query: 803 --QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
QM+G AGR +D + + ++L K+ + + + P+E+ H + +
Sbjct: 660 YKQMVGRAGRAGIDTAGESILLLQEKDKQQVLELI--SGPLETCCSHLVEE 708
Score = 133 (51.9 bits), Expect = 0.00017, P = 0.00017
Identities = 36/99 (36%), Positives = 55/99 (55%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+L+E+ + G + +L T+ LA GVNLPA VI++ V N T L QM
Sbjct: 610 ERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVAN------TFLKRNQYKQM 663
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIES 103
+GRAGR D+ GE I++ + Q L L++ P+E+
Sbjct: 664 VGRAGRAGIDTAGESILLLQEKDKQQVLELISG--PLET 700
>UNIPROTKB|E9PSY5 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
Uniprot:E9PSY5
Length = 805
Score = 225 (84.3 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 96/389 (24%), Positives = 169/389 (43%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE +L+ + V+ I P A+ +++ FG EL
Sbjct: 310 LIYSL-PTSGGKTLVAEILMLQE-LLCRQKDVL---LILPYVAIVQEKISSLS-SFGIEL 363
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
G V E +K EK + I+T EK +L + + + L ++DELH+I
Sbjct: 364 GFFVEEYAGSKGRFPPIKRREKKSLYIATIEKGHSLVNALIETGRMGTLGLVVVDELHMI 423
Query: 587 G-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPP-- 643
G G G LE+ +A++ Y + + I+ +S +L N +DL ++ A + F P
Sbjct: 424 GEGSRGATLEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAEYY-TSQFRPVE 478
Query: 644 -----GVRPVPLEIQIQGVD------ITNFEAR--MKAMTKPTYTAIMQHAKNEKPALVF 690
V E+ + VD + N++ +K + A++ LVF
Sbjct: 479 LKEFLKVNDTIYEVDSRAVDGMTFSRLLNYKYSDALKKVDPDRLVALVTEVIPNYSCLVF 538
Query: 691 VPSRKYARLTAVDLMIYSCKD----SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGV 746
PS+K A L + +D +++ L+ S + V H + +L+ T+ GV
Sbjct: 539 CPSKKNCENVAEMLCKFLSRDYLNHREEEKGELIKSLRNVG-HGKVCP--VLKRTIPFGV 595
Query: 747 GYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL---- 802
Y H GL +++++ + G + + +S++ V L A R + T L
Sbjct: 596 AYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQ 655
Query: 803 --QMMGHAGRPLLDNSEKCVILCHAPHKE 829
QM+G AGR +D + + ++L K+
Sbjct: 656 YKQMIGRAGRAGIDTAGESILLLQEKDKQ 684
Score = 134 (52.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 35/95 (36%), Positives = 51/95 (53%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+L+E+ + G + + T+ LA GVNLPA VI++ V N T L QM
Sbjct: 606 ERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAN------TFLKRNQYKQM 659
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQL 99
+GRAGR D+ GE I++ + Q L L+N L
Sbjct: 660 IGRAGRAGIDTAGESILLLQEKDKQQVLGLINGPL 694
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 227 (85.0 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 125/524 (23%), Positives = 236/524 (45%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE + RN ++ ++++I P ++ ++ + +F L
Sbjct: 473 LIYSL-PTSGGKTLVAEIILFRNLLIKNK----KSLFIFPFVSIVCEK-TESMHEFSSAL 526
Query: 529 GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG- 587
+ VE + +L +++I T EK + + + + + + ++DE+H+IG
Sbjct: 527 QI-PVEGYHGCNGTIPVLPGKRLLICTIEKANIIVNQLIEDGRLLDIGCVVVDEIHMIGD 585
Query: 588 GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI-GASSHGVFNFPPGVR 646
G+ G +LEV+++++ Y++ + +I+I+ +S ++ N +L +W G G F R
Sbjct: 586 GERGQLLEVLISKLLYMS---KGQIQIIGMSATIPNIDNLQKWFRGGVYQGTF------R 636
Query: 647 PVPLEIQIQ-GVDITNFEARM-KAM--TKPTYTAIMQHAKNEKP---ALVFVPSRKYARL 699
PVPL I+ G + + E + K++ T+ +Q P L+F S+ L
Sbjct: 637 PVPLTEYIKIGDKLYDKENNLVKSLQGTEANENHTLQLCLEVVPKHSVLIFCASK----L 692
Query: 700 TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQ-------EEMLRATLRLGVGYLHEG 752
V L + K Q A L E E + +I+ EE + + GV Y +
Sbjct: 693 LTVSLALQLAKSFPQ--AILDNRRDEREILIQLIESSNGCKVEEDFKRMIMAGVAYHNAD 750
Query: 753 LNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT------GRKMLILTTLLQMMG 806
L ++EV+ F+ + V +S++ V L A GR +L + + QM+G
Sbjct: 751 LTNDEREVIERGFKERSLLVLCATSTLSTGVNLPARRVILRSPRMGRNVLDIRSYRQMVG 810
Query: 807 HAGRPLLDNSEKCVILC-H-APHKEYYKKFLYEAF-PVESHLHHFLHDNFNA----EIVA 859
AGR +D + +++C H AP K KK L P+ S ++ + ++F I +
Sbjct: 811 RAGRAGIDEFGESILMCDHFAPDKA--KKLLTSPMDPLLSSINKNV-ESFQKIILDSICS 867
Query: 860 GVIENKQDAVDYLTWTFRLTQ--NPNYYNLQGVSHRHLSDHLSELVEN---TIS----DL 910
G+ +K + + ++TF T P + ++D + L+++ IS D
Sbjct: 868 GIASDKFSILSFFSYTFYSTHLLPPKDMTPYEYIRKLVNDSVEALIKSGHIQISCNQPDP 927
Query: 911 EATRSI-IMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSK 953
++I + D+D P+ + Y + Y CF S L+ K
Sbjct: 928 NDKKTIGTAKFDLDGKPTEESIRYEYTPLGYA---CFRSGLSIK 968
>UNIPROTKB|E9PT19 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
ArrayExpress:E9PT19 Uniprot:E9PT19
Length = 879
Score = 225 (84.3 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 96/389 (24%), Positives = 169/389 (43%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE +L+ + V+ I P A+ +++ FG EL
Sbjct: 310 LIYSL-PTSGGKTLVAEILMLQE-LLCRQKDVL---LILPYVAIVQEKISSLS-SFGIEL 363
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
G V E +K EK + I+T EK +L + + + L ++DELH+I
Sbjct: 364 GFFVEEYAGSKGRFPPIKRREKKSLYIATIEKGHSLVNALIETGRMGTLGLVVVDELHMI 423
Query: 587 G-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPP-- 643
G G G LE+ +A++ Y + + I+ +S +L N +DL ++ A + F P
Sbjct: 424 GEGSRGATLEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAEYY-TSQFRPVE 478
Query: 644 -----GVRPVPLEIQIQGVD------ITNFEAR--MKAMTKPTYTAIMQHAKNEKPALVF 690
V E+ + VD + N++ +K + A++ LVF
Sbjct: 479 LKEFLKVNDTIYEVDSRAVDGMTFSRLLNYKYSDALKKVDPDRLVALVTEVIPNYSCLVF 538
Query: 691 VPSRKYARLTAVDLMIYSCKD----SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGV 746
PS+K A L + +D +++ L+ S + V H + +L+ T+ GV
Sbjct: 539 CPSKKNCENVAEMLCKFLSRDYLNHREEEKGELIKSLRNVG-HGKVCP--VLKRTIPFGV 595
Query: 747 GYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL---- 802
Y H GL +++++ + G + + +S++ V L A R + T L
Sbjct: 596 AYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQ 655
Query: 803 --QMMGHAGRPLLDNSEKCVILCHAPHKE 829
QM+G AGR +D + + ++L K+
Sbjct: 656 YKQMIGRAGRAGIDTAGESILLLQEKDKQ 684
Score = 134 (52.2 bits), Expect = 0.00010, P = 0.00010
Identities = 35/95 (36%), Positives = 51/95 (53%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+L+E+ + G + + T+ LA GVNLPA VI++ V N T L QM
Sbjct: 606 ERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAN------TFLKRNQYKQM 659
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQL 99
+GRAGR D+ GE I++ + Q L L+N L
Sbjct: 660 IGRAGRAGIDTAGESILLLQEKDKQQVLGLINGPL 694
>ZFIN|ZDB-GENE-040718-328 [details] [associations]
symbol:sec63 "SEC63-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0031204 "posttranslational protein
targeting to membrane, translocation" evidence=IEA] [GO:0008565
"protein transporter activity" evidence=IEA] [GO:0042552
"myelination" evidence=IMP] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=IMP] InterPro:IPR027137
InterPro:IPR001623 Pfam:PF00226 ZFIN:ZDB-GENE-040718-328
GO:GO:0006457 Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271
SUPFAM:SSF46565 PROSITE:PS50076 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 CTD:11231 HOGENOM:HOG000037933
HOVERGEN:HBG057075 KO:K09540 PANTHER:PTHR24075 EMBL:BC076198
IPI:IPI00510190 RefSeq:NP_001002588.1 UniGene:Dr.76509
ProteinModelPortal:Q6DGY6 STRING:Q6DGY6 PRIDE:Q6DGY6 GeneID:436861
KEGG:dre:436861 InParanoid:Q6DGY6 NextBio:20831292 Bgee:Q6DGY6
Uniprot:Q6DGY6
Length = 751
Score = 145 (56.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 61/210 (29%), Positives = 90/210 (42%)
Query: 974 IRPGEE----ELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKV 1029
IRP + +L+R L N P C +KA LL A + + N++ DQ V
Sbjct: 266 IRPTDNIEVPQLIRELGNINVKKKEPPFCYPYSLKARVLLLAQLARMDVSENIEEDQRFV 325
Query: 1030 LLSASRLLQAMVDV-------ISSNGWLSLALLA-----MEVSQMVTQGMWEHDSMLLQL 1077
+ LLQ M++V +S G L L M++SQMV QG+ E S LLQL
Sbjct: 326 VKKCPALLQEMINVGCQLTMMATSRGGLRAPRLTSIENCMKLSQMVVQGLQEAKSPLLQL 385
Query: 1078 PHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLD-IARFCNRFPNIDM 1136
PHF ++ + C + + T+ + + D + FP I+M
Sbjct: 386 PHFEEEHLRYCISKKYK-VRTLQDLVSLKDSDRRNMLRFLGEEKYDEVIGVLGSFPYINM 444
Query: 1137 SYKVQ-----DSENVRAGGEDTTLQVVLER 1161
K+Q DS N+ AG T+ V+L R
Sbjct: 445 ETKLQVLDDEDSNNITAGSI-VTVTVILTR 473
Score = 133 (51.9 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+++ +L+ +L F AP + G Y++
Sbjct: 630 PVYSLFFPEEKQEWWWLYIADRKEQTLVSMPNHVCTLKDTEEVELKFPAPSKTGNYQYSV 689
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
DS+MG DQ ++V EA
Sbjct: 690 ILRSDSFMGLDQIKPLKLEVHEA 712
Score = 47 (21.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 28/135 (20%), Positives = 51/135 (37%)
Query: 162 RITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKIN 221
R TD I + + N+ ++ + +K + L + V E++EE +
Sbjct: 267 RPTDNIEVPQLIRELGNINVKKKEPPFCYPYSLKARVLLLAQLARMDVSENIEEDQRFVV 326
Query: 222 VLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSV 281
+ ++ G LT M+ R L+ E +KLS+MV + +
Sbjct: 327 KKCPALLQEMINVGCQLTM-MATSRGG-------LRAPRLTSIENCMKLSQMVVQGLQEA 378
Query: 282 QTPLRQFNGIPNEIL 296
++PL Q E L
Sbjct: 379 KSPLLQLPHFEEEHL 393
>ZFIN|ZDB-GENE-060503-421 [details] [associations]
symbol:helq "helicase, POLQ-like" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
Length = 1010
Score = 222 (83.2 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 97/411 (23%), Positives = 179/411 (43%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE I + + ++ YI+ ++ K R FG EL
Sbjct: 276 LIYSL-PTSGGKTLVAEILIFKELLCRKKDALLILPYISLVQE--KVRGLS---SFGIEL 329
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
V E +K K + I+T EK +L + + + L ++DELH++
Sbjct: 330 DFLVEEYAGSKGKFPPVKRRNKNSLYITTIEKGHSLVNSLIENDRLDNIGLVVVDELHML 389
Query: 587 G-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPP-G 644
G G G +LE+ ++++ Y++ + ++ +S +L N KDL ++ A ++ NF P
Sbjct: 390 GDGSRGAILEMTLSKILYMSKSTQ----VIGMSATLGNVKDLQSFLRAENY-TNNFRPVE 444
Query: 645 VRP-VPLEIQIQGVD-----------ITNFE--ARMKAMTKPTYTAIMQHAKNEKPALVF 690
++ V ++ I VD + NF+ + M+ M A+ ++ L+F
Sbjct: 445 LKEYVKIKDSIYEVDPKEEACFTFSRLLNFKYSSGMQKMDPDHIIALATEVIPQQSCLIF 504
Query: 691 VPSRKYARLTAVDLMIYSCKD----SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGV 746
++K A + Y K+ + + A LL K + S+ +L+ T+ G+
Sbjct: 505 CATKKNCENLAGMICKYLNKEFIKHKEAEKAILLGELKS-SGNGSLCP--VLQKTIPFGL 561
Query: 747 GYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL---- 802
Y H GL ++++V + +G + + +S++ + L A R + L
Sbjct: 562 AYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLAAGINLPARRVILRSPYVAADFLKRSQ 621
Query: 803 --QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
QM+G AGR +D + +++ KK L P+E + LHD
Sbjct: 622 YKQMVGRAGRAGIDAMGESILILQDKDINTAKKLL--CAPMEKCYSNLLHD 670
>UNIPROTKB|Q9UGP8 [details] [associations]
symbol:SEC63 "Translocation protein SEC63 homolog"
species:9606 "Homo sapiens" [GO:0008565 "protein transporter
activity" evidence=IEA] [GO:0031204 "posttranslational protein
targeting to membrane, translocation" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0005789 "endoplasmic
reticulum membrane" evidence=IEA] [GO:0004872 "receptor activity"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0006612 "protein targeting to membrane" evidence=TAS]
InterPro:IPR027137 InterPro:IPR001623 EMBL:AF100141 Pfam:PF00226
GO:GO:0005783 GO:GO:0016021 GO:GO:0006457 GO:GO:0005789
GO:GO:0006612 GO:GO:0004872 Gene3D:1.10.287.110 PRINTS:PR00625
SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS00636 PROSITE:PS50076
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
TCDB:3.A.5.9.1 MIM:174050 Orphanet:2924 EMBL:AJ011779 EMBL:AL024507
EMBL:BC023598 EMBL:BC047221 EMBL:BC048287 EMBL:AL137338
IPI:IPI00218922 PIR:T46504 RefSeq:NP_009145.1 UniGene:Hs.26904
ProteinModelPortal:Q9UGP8 SMR:Q9UGP8 IntAct:Q9UGP8 STRING:Q9UGP8
PhosphoSite:Q9UGP8 DMDM:18203500 PaxDb:Q9UGP8 PeptideAtlas:Q9UGP8
PRIDE:Q9UGP8 DNASU:11231 Ensembl:ENST00000369002 GeneID:11231
KEGG:hsa:11231 UCSC:uc003psb.4 CTD:11231 GeneCards:GC06M108237
HGNC:HGNC:21082 MIM:608648 neXtProt:NX_Q9UGP8 PharmGKB:PA134936990
eggNOG:COG5407 HOGENOM:HOG000037933 HOVERGEN:HBG057075
InParanoid:Q9UGP8 KO:K09540 OMA:TIENCMK OrthoDB:EOG48PMJQ
PhylomeDB:Q9UGP8 ChiTaRS:sec63 GenomeRNAi:11231 NextBio:42742
ArrayExpress:Q9UGP8 Bgee:Q9UGP8 CleanEx:HS_SEC63
Genevestigator:Q9UGP8 GermOnline:ENSG00000025796 PANTHER:PTHR24075
Uniprot:Q9UGP8
Length = 760
Score = 140 (54.3 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+++ +L+ +L F AP + G YT+
Sbjct: 637 PVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTV 696
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
DSYMG DQ ++V EA
Sbjct: 697 FLRSDSYMGLDQIKPLKLEVHEA 719
Score = 130 (50.8 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 54/187 (28%), Positives = 80/187 (42%)
Query: 996 PKCTDPH-VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLS--- 1051
P T P+ +KA LL +H + + L+ DQ+ +L LLQ MV+VI ++
Sbjct: 291 PPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIVMARNR 350
Query: 1052 ---------LALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVF 1100
LA L M++SQM QG+ + S LLQLPH +D +R + I+T+
Sbjct: 351 EEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQ 410
Query: 1101 XXXXXXXXXXXXXXQ-MSDVQLLDIARFCNRFPNIDMSYKVQ-----DSENVRAGGEDTT 1154
+ D + ++ FP + M K Q DS N+ G T
Sbjct: 411 DLVSLKESDRHTLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
Query: 1155 LQVVLER 1161
L V L R
Sbjct: 471 L-VKLTR 476
Score = 93 (37.8 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 34/103 (33%), Positives = 48/103 (46%)
Query: 951 TSKTKMKGLLEVLASASEY-----AQLPIRPGEEELVRRLINHQ---RFSFANPKCTDPH 1002
T MK L+ VLA ASE+ RP + L+ +LI P T P+
Sbjct: 238 TRNMDMKRLIMVLAGASEFDPQYNKDATSRPTDNILIPQLIREIGSINLKKNEPPLTCPY 297
Query: 1003 -VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVI 1044
+KA LL +H + + L+ DQ+ +L LLQ MV+VI
Sbjct: 298 SLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVI 340
Score = 51 (23.0 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 253 EIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+IVL GW+ A K+SK T R + P N P + +++K+
Sbjct: 76 KIVLLAGWALFLFLAYKVSK--TDREYQEYNPYEVLNLDPGATVAEIKKQ 123
Score = 44 (20.5 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 265 EKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 299
E +KLS+M + + ++PL Q I + L ++
Sbjct: 364 ENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRV 398
Score = 39 (18.8 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 978 EEELVRRLINHQRF 991
EE+ +RR+ NH+++
Sbjct: 391 EEDNLRRVSNHKKY 404
Score = 39 (18.8 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 1141 QDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAI 1200
+D E V G D+ + RD + G S+R +++ D+A+ +L
Sbjct: 564 EDEEEVSDKGSDSEEEET-NRDSQSEKDDG---SDRDSDREQDEKQNKDDEAEWQEL--- 616
Query: 1201 KRVSLQRKSRAKLDFAAPVEGGKKTYTLDF 1230
+ S+QRK RA L+ + + Y+L F
Sbjct: 617 -QQSIQRKERALLETKSKIT--HPVYSLYF 643
>MGI|MGI:2155302 [details] [associations]
symbol:Sec63 "SEC63-like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0001889 "liver development" evidence=IGI;IMP]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0006807 "nitrogen
compound metabolic process" evidence=IGI] [GO:0006810 "transport"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IMP] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0072001 "renal system development"
evidence=IGI] InterPro:IPR027137 InterPro:IPR001623 Pfam:PF00226
MGI:MGI:2155302 GO:GO:0016021 GO:GO:0006457 GO:GO:0005789
GO:GO:0015031 GO:GO:0006807 Gene3D:1.10.287.110 PRINTS:PR00625
SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS00636 PROSITE:PS50076
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0072001 CTD:11231 eggNOG:COG5407 HOGENOM:HOG000037933
HOVERGEN:HBG057075 KO:K09540 OMA:TIENCMK OrthoDB:EOG48PMJQ
ChiTaRS:sec63 PANTHER:PTHR24075 EMBL:AY024346 EMBL:AC124998
EMBL:BC019366 EMBL:BC031846 IPI:IPI00330857 RefSeq:NP_694695.3
UniGene:Mm.214344 ProteinModelPortal:Q8VHE0 SMR:Q8VHE0
STRING:Q8VHE0 PhosphoSite:Q8VHE0 PaxDb:Q8VHE0 PRIDE:Q8VHE0
Ensembl:ENSMUST00000019937 GeneID:140740 KEGG:mmu:140740
UCSC:uc007eyx.2 GeneTree:ENSGT00390000001965 InParanoid:Q8VHE0
NextBio:369955 Bgee:Q8VHE0 CleanEx:MM_SEC63 Genevestigator:Q8VHE0
GermOnline:ENSMUSG00000019802 Uniprot:Q8VHE0
Length = 760
Score = 140 (54.3 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+++ +L+ +L F AP + G YT+
Sbjct: 637 PVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTV 696
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
DSYMG DQ ++V EA
Sbjct: 697 FLRSDSYMGLDQIKPLKLEVHEA 719
Score = 130 (50.8 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 54/187 (28%), Positives = 80/187 (42%)
Query: 996 PKCTDPH-VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLS--- 1051
P T P+ +KA LL +H + + L+ DQ+ +L LLQ MV+VI ++
Sbjct: 291 PPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIIMARSR 350
Query: 1052 ---------LALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVF 1100
LA L M++SQM QG+ + S LLQLPH +D +R + I+T+
Sbjct: 351 EEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQ 410
Query: 1101 XXXXXXXXXXXXXXQ-MSDVQLLDIARFCNRFPNIDMSYKVQ-----DSENVRAGGEDTT 1154
+ D + ++ FP + M K Q DS N+ G T
Sbjct: 411 DLVSLKESDRHSLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
Query: 1155 LQVVLER 1161
L V L R
Sbjct: 471 L-VKLTR 476
Score = 92 (37.4 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 34/103 (33%), Positives = 48/103 (46%)
Query: 951 TSKTKMKGLLEVLASASEY-----AQLPIRPGEEELVRRLINHQ---RFSFANPKCTDPH 1002
T MK L+ VLA ASE+ RP + L+ +LI P T P+
Sbjct: 238 TRNMDMKRLIMVLAGASEFDPQYNKDSTSRPTDNILIPQLIREIGSINLKKNEPPLTCPY 297
Query: 1003 -VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVI 1044
+KA LL +H + + L+ DQ+ +L LLQ MV+VI
Sbjct: 298 SLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVI 340
Score = 51 (23.0 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 253 EIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+IVL GW+ A K+SK T R + P N P + +++K+
Sbjct: 76 KIVLLAGWALFLFLAYKVSK--TDREYQEYNPYEVLNLDPGATVAEIKKQ 123
Score = 44 (20.5 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 265 EKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 299
E +KLS+M + + ++PL Q I + L ++
Sbjct: 364 ENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRV 398
Score = 39 (18.8 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 978 EEELVRRLINHQRF 991
EE+ +RR+ NH+++
Sbjct: 391 EEDNLRRVSNHKKY 404
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 160 (61.4 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 58/208 (27%), Positives = 105/208 (50%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ AE +L+ R E +A++I P ++AK++ + F +E+G+ V
Sbjct: 24 APTSAGKTLVAELLMLK---RVLEMR-KKALFILPFVSVAKEKKYYLQSLF-QEIGINVD 78
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGP 592
T+ I + T E+ + L R + + + + ++DELH++G G
Sbjct: 79 GYMGSTS-PTGHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 137
Query: 593 VLEVIVARMRYI-----------ASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNF 641
+LE+++ ++ YI AS + N ++IV +S +L N + + W+ A + NF
Sbjct: 138 LLELLLTKICYITHKSASCQADLASPLSNAVQIVGMSATLPNLEIVASWLNAELYHT-NF 196
Query: 642 PPGVRPVPLEIQIQGVDITN--FEARMK 667
RPVPL ++ V I N +++ MK
Sbjct: 197 ----RPVPL---LESVKIGNSIYDSSMK 217
Score = 156 (60.0 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 41/118 (34%), Positives = 67/118 (56%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM-- 62
+R ++E F G ++VL +T+ L+ GVNLPA VII+ T ++ + PLDI+
Sbjct: 333 ERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVIIR-TPIFGGQ--------PLDILTY 383
Query: 63 -QMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQL-PIESQFVSKLAELLNAEIV 118
QM+GRAGR D+ GE I++ +SE ++L+ L P+ S + E + A ++
Sbjct: 384 KQMVGRAGRKGVDTVGESILVCKNSEKSKGIALLQGSLKPVRSCLQRQKGEEVTASMI 441
Score = 121 (47.7 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 43/157 (27%), Positives = 70/157 (44%)
Query: 735 EEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH---LAT 791
+ +L+ T+ GV + H GL +++++ F G+I+V +S++ V L A + T
Sbjct: 311 DSVLQKTIPWGVAFHHAGLTFEERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVIIRT 370
Query: 792 ---GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAF-PVESHLHH 847
G + L + T QM+G AGR +D + +++C K L + PV S L
Sbjct: 371 PIFGGQPLDILTYKQMVGRAGRKGVDTVGESILVCKNSEKSKGIALLQGSLKPVRSCLQR 430
Query: 848 FLHDNFNAE--------IVAGVIENKQDAVDYLTWTF 876
+ A IV GV QD Y + TF
Sbjct: 431 QKGEEVTASMIRAILEIIVGGVASTSQDMQTYASCTF 467
Score = 38 (18.4 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 269 KLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPI 310
KL+ V+ R + P NG P ++ E KD KP+
Sbjct: 1486 KLNTAVSLRALELSDPATIGNGYPQREVIG-EDKDERFQKPM 1526
>UNIPROTKB|E1B7B1 [details] [associations]
symbol:SEC63 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031204 "posttranslational protein targeting to
membrane, translocation" evidence=IEA] [GO:0008565 "protein
transporter activity" evidence=IEA] InterPro:IPR027137
InterPro:IPR001623 Pfam:PF00226 GO:GO:0006457 Gene3D:1.10.287.110
PRINTS:PR00625 SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
CTD:11231 KO:K09540 OMA:TIENCMK PANTHER:PTHR24075
GeneTree:ENSGT00390000001965 EMBL:DAAA02025946 IPI:IPI00824491
RefSeq:NP_001179744.1 UniGene:Bt.91327 ProteinModelPortal:E1B7B1
Ensembl:ENSBTAT00000022030 GeneID:541040 KEGG:bta:541040
NextBio:20878972 Uniprot:E1B7B1
Length = 760
Score = 140 (54.3 bits), Expect = 9.4e-14, Sum P(3) = 9.4e-14
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+++ +L+ +L F AP + G YT+
Sbjct: 637 PVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTV 696
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
DSYMG DQ ++V EA
Sbjct: 697 FLRSDSYMGLDQIKPLKLEVHEA 719
Score = 128 (50.1 bits), Expect = 9.4e-14, Sum P(3) = 9.4e-14
Identities = 54/187 (28%), Positives = 80/187 (42%)
Query: 996 PKCTDPH-VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLS--- 1051
P T P+ +KA LL +H + + L+ DQ+ +L LLQ MV+VI ++
Sbjct: 291 PPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIIMARSR 350
Query: 1052 ---------LALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVF 1100
LA L M++SQM QG+ + S LLQLPH +D +R + I+T+
Sbjct: 351 EEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKFKIKTIQ 410
Query: 1101 XXXXXXXXXXXXXXQ-MSDVQLLDIARFCNRFPNIDMSYKVQ-----DSENVRAGGEDTT 1154
+ D + ++ FP + M K Q DS N+ G T
Sbjct: 411 DLVSLKESDRHNLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
Query: 1155 LQVVLER 1161
L V L R
Sbjct: 471 L-VKLTR 476
Score = 93 (37.8 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 34/103 (33%), Positives = 48/103 (46%)
Query: 951 TSKTKMKGLLEVLASASEY-----AQLPIRPGEEELVRRLINHQ---RFSFANPKCTDPH 1002
T MK L+ VLA ASE+ RP + L+ +LI P T P+
Sbjct: 238 TRNMDMKRLIMVLAGASEFDPQYNKDATSRPTDNILIPQLIREIGSINLKKNEPPLTCPY 297
Query: 1003 -VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVI 1044
+KA LL +H + + L+ DQ+ +L LLQ MV+VI
Sbjct: 298 SLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVI 340
Score = 51 (23.0 bits), Expect = 9.4e-14, Sum P(3) = 9.4e-14
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 253 EIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+IVL GW+ A K+SK T R + P N P + +++K+
Sbjct: 76 KIVLLAGWALFLFLAYKVSK--TDREYQEYNPYEVLNLDPGATVAEIKKQ 123
Score = 47 (21.6 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 265 EKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPI 310
E +KLS+M + + ++PL Q I + L ++ F K I
Sbjct: 364 ENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKFKIKTI 409
Score = 42 (19.8 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 978 EEELVRRLINHQRF 991
EE+ +RR+ NH++F
Sbjct: 391 EEDNLRRVSNHKKF 404
>UNIPROTKB|I3LAH4 [details] [associations]
symbol:I3LAH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00640000091272 EMBL:CU104757
Ensembl:ENSSSCT00000025204 OMA:FMKEGSA Uniprot:I3LAH4
Length = 197
Score = 191 (72.3 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 56/181 (30%), Positives = 87/181 (48%)
Query: 612 IRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMT 670
IRI+ LS +L N D+ ++ + G+F F RPVPL GV N ++ M
Sbjct: 2 IRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVKSANKVQQLNNMD 61
Query: 671 KPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE---VE 727
+ Y ++++ K +VFV +R TA+ L I K++ Q S FL E E
Sbjct: 62 EVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNNGQISYFLPTQGPEYGHAE 120
Query: 728 PHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA 787
V + + +R G H G+ + D+ +V +LF G IKV V ++++ W V L A
Sbjct: 121 KQVQKSRNKQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPA 180
Query: 788 H 788
H
Sbjct: 181 H 181
Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 30/41 (73%), Positives = 33/41 (80%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIK 41
M R DR LVE LF +GH++VLV TA LAWGVNLPAH VIIK
Sbjct: 146 MLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIK 186
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 170 (64.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 56/192 (29%), Positives = 99/192 (51%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ AE IL+ R ET +A++I P ++AK++ C + F +E+ M V
Sbjct: 80 APTSAGKTLVAELLILK---RVLETR-KKALFILPFVSVAKEKKCYLQALF-QEVDMRVG 134
Query: 534 EL--TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQG 590
++ A LL+ + + T EK + L R + + + + ++DELH++G
Sbjct: 135 GYMGSISPAGRFSLLD---VAVCTIEKANGLINRLIEENQMDSLGVVVVDELHMLGDSHR 191
Query: 591 GPVLEVIVARMRYIASQVENK-----------IRIVALSTSLANAKDLGEWIGASSHGVF 639
G +LE+++ ++RYI + + I++V +S +L N L W+ A +
Sbjct: 192 GYLLELLLTKVRYITEKAAKRKTKMKSPGFGGIQVVGMSATLPNLGLLASWLDAELYCT- 250
Query: 640 NFPPGVRPVPLE 651
+F RPVPL+
Sbjct: 251 DF----RPVPLK 258
Score = 138 (53.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 40/108 (37%), Positives = 56/108 (51%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R ++E F ++VL +T+ L+ GVNLPA VII+ P G T L L QM
Sbjct: 389 ERDIIEGAFRQSTIRVLAATSTLSSGVNLPARRVIIR-----TPMFGG-TLLDVLTYKQM 442
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQL-PIESQFVSKLAE 111
GRAGR D+ GE I++ SE +L+ L P+ S + K E
Sbjct: 443 AGRAGRKGVDTEGESILVCKPSERSKGTALLQGSLKPVRSCLLRKEGE 490
Score = 101 (40.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 32/118 (27%), Positives = 55/118 (46%)
Query: 735 EEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH---LAT 791
+ +L+ TL GV + H GL +++++ F I+V +S++ V L A + T
Sbjct: 367 DSVLQRTLPWGVAFHHAGLTFDERDIIEGAFRQSTIRVLAATSTLSSGVNLPARRVIIRT 426
Query: 792 ---GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAF-PVESHL 845
G +L + T QM G AGR +D + +++C + L + PV S L
Sbjct: 427 PMFGGTLLDVLTYKQMAGRAGRKGVDTEGESILVCKPSERSKGTALLQGSLKPVRSCL 484
Score = 43 (20.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/70 (31%), Positives = 32/70 (45%)
Query: 190 QSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEG-LSLTSDMSA-GRL 247
Q+ I+ +A LL+ I V E ++ AKI T++ L LS T M L
Sbjct: 543 QTGPIEACIAWLLENEFIQVLERADDKKAKI--FHPTHLGSATLSSSLSPTEAMEIFSDL 600
Query: 248 SRALFEIVLK 257
RA+ VL+
Sbjct: 601 QRAMKSFVLE 610
>UNIPROTKB|E1C0C3 [details] [associations]
symbol:SEC63 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008565 "protein transporter activity" evidence=IEA]
[GO:0031204 "posttranslational protein targeting to membrane,
translocation" evidence=IEA] InterPro:IPR027137 InterPro:IPR001623
Pfam:PF00226 GO:GO:0006457 Gene3D:1.10.287.110 PRINTS:PR00625
SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 OMA:TIENCMK
PANTHER:PTHR24075 GeneTree:ENSGT00390000001965 EMBL:AADN02002108
EMBL:AADN02002106 EMBL:AADN02002107 IPI:IPI00581078
Ensembl:ENSGALT00000024710 Uniprot:E1C0C3
Length = 759
Score = 145 (56.1 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+ + +L+ K +L F AP + G YT+
Sbjct: 636 PVYSLFFPEEKQEWWWLYIADRKEQMLICMPYHVCTLKDKEEVELKFPAPGKPGNYQYTV 695
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
DSYMG DQ ++V EA
Sbjct: 696 YLRSDSYMGLDQIKPLKLEVHEA 718
Score = 127 (49.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 52/187 (27%), Positives = 79/187 (42%)
Query: 996 PKCTDPH-VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWL---- 1050
P T P+ +KA LL H + + L+ DQ+ +L + LLQ M++VI +
Sbjct: 291 PPLTCPYSLKARVLLLTHLARMKVPDTLEEDQQFILKKSPALLQEMINVICQLIIMARSR 350
Query: 1051 --------SLALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVF 1100
SL L M++SQM QG+ + S LLQLPH +D +R + I+++
Sbjct: 351 EEREFRAPSLGSLENCMKLSQMTVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKSIQ 410
Query: 1101 XXXXXXXXXXXXXXQ-MSDVQLLDIARFCNRFPNIDMSYKVQ-----DSENVRAGGEDTT 1154
+ D + ++ FP + M K Q DS N+ G T
Sbjct: 411 DLVSLKGSDRRNLLHFLEDKKYDEVMAVLGSFPYVTMDIKPQVLDDEDSNNITVGSLVTV 470
Query: 1155 LQVVLER 1161
L V L R
Sbjct: 471 L-VTLTR 476
Score = 92 (37.4 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 32/103 (31%), Positives = 47/103 (45%)
Query: 951 TSKTKMKGLLEVLASASEY-----AQLPIRPGEEELVRRLINHQ---RFSFANPKCTDPH 1002
T MK L+ VLA ASE+ RP + + +LI P T P+
Sbjct: 238 TRNMDMKRLIMVLAGASEFDPQYNKDATSRPADNVQIPQLIREIGGINLKKNEPPLTCPY 297
Query: 1003 -VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVI 1044
+KA LL H + + L+ DQ+ +L + LLQ M++VI
Sbjct: 298 SLKARVLLLTHLARMKVPDTLEEDQQFILKKSPALLQEMINVI 340
Score = 45 (20.9 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 253 EIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+I+L GW+ A K+SK T R + P + P + +++K+
Sbjct: 76 KIILLAGWALFLFLAYKVSK--TDREYQEYNPYEVLHLDPGASISEIKKQ 123
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 265 EKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 299
E +KLS+M + + ++PL Q I + L ++
Sbjct: 364 ENCMKLSQMTVQGLQQFKSPLLQLPHIEEDNLRRV 398
Score = 41 (19.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 255 VLKRGWSQLAEKALKLSKMVTKRMW-------SVQTPL----RQFNGIPN-EILMKLEKK 302
V +GW Q + K SK K+ S+Q P +Q NG+ + E+++K E++
Sbjct: 507 VKSKGWQQKNKGTKKASKSKKKKPLKKKPVPPSLQPPKQQKQKQANGVAHKEVVVKEEEE 566
Query: 303 D 303
+
Sbjct: 567 E 567
Score = 39 (18.8 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 978 EEELVRRLINHQRF 991
EE+ +RR+ NH+++
Sbjct: 391 EEDNLRRVSNHKKY 404
Score = 38 (18.4 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 782 EVPLTAHLATGRKMLILTTLLQM 804
E PLT + ++L+LT L +M
Sbjct: 290 EPPLTCPYSLKARVLLLTHLARM 312
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 212 (79.7 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 115/494 (23%), Positives = 211/494 (42%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
+L L PTG+GKT+ AE +LR + A+ + P A+ +++ F G
Sbjct: 188 ILSL-PTGAGKTLIAEVLMLRE----AIVRKRNAILVLPYVAIVQEKISALA-PFEDAFG 241
Query: 530 MCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 587
+ + E +K ++ + ++T EK + L + + +V + ++DELH+IG
Sbjct: 242 INIEEYASNKGRFPPIKRRKRVSVYVATIEKANMLINSLITQGQLDRVGMVVVDELHMIG 301
Query: 588 GQG-GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVR 646
G G +LE ++A+ Y + +IV +S +L N DL + A + NF P
Sbjct: 302 DGGRGAILEQLLAKFLYKGTG-----QIVGMSATLPNIDDLKFALRAFVYST-NFRPVEL 355
Query: 647 PVPLEI-----QI-QGVDIT---NFEARMKAMTKPT-YTAIMQHAKNEKPALVFVPSRKY 696
++I Q+ + D+ + T P ++ + A++F P++K
Sbjct: 356 TEFVKIGQTMHQVSENGDLNPAGDLPTNNLKSTDPDGICQLLAKLIPKNSAVIFCPNKKN 415
Query: 697 ARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRL----GVGYLHEG 752
AV +I + + A S ++ ++S +E + A L+ GV Y H G
Sbjct: 416 CENVAV--LIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQCILSGVAYHHSG 473
Query: 753 LNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA------TGRKMLILTTLLQMMG 806
L + +++ V F G I V +S++ V L GR+ L LQM G
Sbjct: 474 LTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIKAPMVGRERLGKAQYLQMAG 533
Query: 807 HAGRPLLDNSEKCVILCHAPHKE-YYKKFLYEAFP--VESHLHHFLHDNFNAE-IVAGVI 862
AGR D C+ + A +E ++++ L P + S +F + +V +
Sbjct: 534 RAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSLSSEESMGSFILDCVVLKLA 593
Query: 863 ENKQDAVDYLTWT-FRLTQNP-NYYNLQGVSHRHLSDH----LSELVENTISDLEATRSI 916
EN ++ + + ++ F ++P N L S + L +H + L ++ S+ A S
Sbjct: 594 ENIEEIMTAVRYSLFYAQESPENIRKLVESSVKRLEEHYFITIEPLEQDVASEPSAQASS 653
Query: 917 IMEDDMDLCPSNYG 930
I + PS+ G
Sbjct: 654 IPRVPGKISPSDLG 667
Score = 147 (56.8 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 43/144 (29%), Positives = 72/144 (50%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ + +R+ VE F +G + V+ +T+ LA GVNLP VIIK V E+ L
Sbjct: 474 LTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIKAPMV-GRER-----LGKAQ 527
Query: 61 IMQMLGRAGRPQYDSYGEGI-IITGHSELQYYLSLMNQQLP-IESQFVSK--LAELLNAE 116
+QM GRAGR +D+ G+ I II E +++ ++ +P S S+ + +
Sbjct: 528 YLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSLSSEESMGSFILDC 587
Query: 117 IVLGTVQNAKEACNWIEYTYLYTR 140
+VL +N +E + Y+ Y +
Sbjct: 588 VVLKLAENIEEIMTAVRYSLFYAQ 611
>UNIPROTKB|I3LVA7 [details] [associations]
symbol:I3LVA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000024341 Uniprot:I3LVA7
Length = 119
Score = 176 (67.0 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 45/114 (39%), Positives = 67/114 (58%)
Query: 551 IIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVLEVIVAR-MRYIASQV 608
++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVLE IVAR +R + S
Sbjct: 1 MLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVES-T 59
Query: 609 ENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEIQIQGVDITN 661
++ IRI+ LS +L N D+ ++ + G+F F RPVPL GV N
Sbjct: 60 QSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVKSAN 113
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 167 (63.8 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 54/189 (28%), Positives = 96/189 (50%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ +E IL+ R ET +A++I P ++A+++ + F +E G+ V
Sbjct: 322 APTSAGKTLVSELLILK---RVLETR-QKAMFILPFVSVAREKMFYLQNVF-QEAGIRVE 376
Query: 534 ELTVET--AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
T A L+ + + T EK + L R + + + ++DELH++G G
Sbjct: 377 GYMGSTSAAGGFSALD---VAVCTIEKANGLVNRLIEEDKLDLLGTVVVDELHMVGDSGR 433
Query: 591 GPVLEVIVARMRYIASQVENK---------IRIVALSTSLANAKDLGEWIGASSHGVFNF 641
G +LE+++ ++RYIA + + ++I+ +S +L N L W+ A + N+
Sbjct: 434 GYLLELLLTKIRYIAQKTATRNSGQSTSTGVQIIGMSATLPNLDLLARWLSAELYST-NY 492
Query: 642 PPGVRPVPL 650
RPVPL
Sbjct: 493 ----RPVPL 497
Score = 161 (61.7 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 47/131 (35%), Positives = 75/131 (57%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R ++E F G+++VL +T+ L+ GVNLPA VII+ T V+N G ++ L QM
Sbjct: 627 ERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVIIR-TPVFN---GHLLDI--LTYKQM 680
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQL-PIESQFVSKLAE-----LLNA--E 116
+GRAGR D+ GE +++ +E +SL+ L PI S V + E +L A E
Sbjct: 681 VGRAGRKGVDTIGESVLVCKEAERAKGMSLIQGSLKPISSCLVKREGEGVTTSMLRAILE 740
Query: 117 IVLGTVQNAKE 127
I++G V ++ +
Sbjct: 741 IIVGGVASSPQ 751
Score = 97 (39.2 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 735 EEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRK 794
+ +L+ T+ GV + H GL +++++ F G I+V +S++ V L A R
Sbjct: 605 DHVLQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVIIRT 664
Query: 795 ------MLILTTLLQMMGHAGRPLLDNSEKCVILC 823
+L + T QM+G AGR +D + V++C
Sbjct: 665 PVFNGHLLDILTYKQMVGRAGRKGVDTIGESVLVC 699
Score = 51 (23.0 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 897 DHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIA-SYYYISYKTIECFSSSLTSKTK 955
DH+ L T+ D + +++ + C I +Y + +K ++ S +
Sbjct: 529 DHIVSLCFETVQDGHS--ALLFCPSKNWCEKLADSIGREFYNLHHKEMQSGSGGQSISLN 586
Query: 956 MKGLLEVLA 964
+GLL+VLA
Sbjct: 587 QEGLLDVLA 595
Score = 37 (18.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 561 ALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 592
AL+ R ++ V + L + +L L+G + P
Sbjct: 1070 ALTEREAAQQIVAEAQLLLQKDLALLGVEWNP 1101
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 153 (58.9 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 55/208 (26%), Positives = 105/208 (50%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ AE IL+ R E +A++I P ++AK++ + F +E+G+ V
Sbjct: 247 APTSAGKTLVAELLILK---RVLEMR-KKALFILPFVSVAKEKKYYLQSLF-QEVGIKVD 301
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGP 592
T+ + I + T E+ + L R + + + + ++DELH++G G
Sbjct: 302 GYMGSTS-PTRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 360
Query: 593 VLEVIVARMRYIASQ-----------VENKIRIVALSTSLANAKDLGEWIGASSHGVFNF 641
+LE+++ ++ YI + + N ++IV +S +L N + + W+ A + +F
Sbjct: 361 LLELLLTKICYITQKSASCQADLAIPLSNAVQIVGMSATLPNLELVASWLNAELYHT-DF 419
Query: 642 PPGVRPVPLEIQIQGVDITN--FEARMK 667
RPVPL ++ + I N +++ MK
Sbjct: 420 ----RPVPL---LESIKIGNSIYDSSMK 440
Score = 111 (44.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 735 EEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH------ 788
+ +L+ T+ GV + H GL +++++ F G+I+V +S++ V L A
Sbjct: 536 DSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVIIRT 595
Query: 789 -LATGRKMLILTTLLQMMGHAGRPLLD---NSEKCVILCHAPHKEYYKKFLYEAF-PVES 843
+ +GR + ILT QM+G AGR +D N+ + +++C K L + PV S
Sbjct: 596 PIFSGRLLDILT-YKQMVGRAGRKGVDTVGNTGESILVCKNSEKSKGITLLQGSLKPVHS 654
Query: 844 HLHHFLHDNFNAEIVAGVIE 863
L + + ++ ++E
Sbjct: 655 CLQRHEGEEVTSSMIRAILE 674
Score = 64 (27.6 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 791 TGRKMLILTTLLQMMGHAGRPLLD---NSEKCVILCHAPHKEYYKKFLYEAF-PVESHLH 846
+GR + ILT QM+G AGR +D N+ + +++C K L + PV S L
Sbjct: 599 SGRLLDILT-YKQMVGRAGRKGVDTVGNTGESILVCKNSEKSKGITLLQGSLKPVHSCLQ 657
Query: 847 HFLHDNFNAE--------IVAGVIENKQDAVDYLTWTF 876
+ + IV GV QD Y + TF
Sbjct: 658 RHEGEEVTSSMIRAILEIIVGGVASTSQDIQTYASCTF 695
Score = 47 (21.6 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 25/102 (24%), Positives = 39/102 (38%)
Query: 785 LTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEK---CVILCHAPHKEYYKKFLYEAFPV 841
L HL TG + + ++ GR L SEK VI + + Y K ++ P+
Sbjct: 1269 LGEHLITGSQSKHVIQATSVVSENGRELAIESEKKNKVVIQNDSKIQNVYVKH-HDTHPI 1327
Query: 842 ESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPN 883
L + N I KQ + Y T + L ++ N
Sbjct: 1328 NQCLEKQFNKETNTHIKLNTTVAKQ--IPYETDSSYLNRDSN 1367
>UNIPROTKB|J9P160 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
Uniprot:J9P160
Length = 1072
Score = 199 (75.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 99/412 (24%), Positives = 173/412 (41%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE +L+ +M I P A+ +++ FG EL
Sbjct: 327 LIYSL-PTSGGKTLVAEILMLQELLCRRRDVLM----ILPYVAIVQEKISGLS-SFGIEL 380
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
G V E +K K + I+T EK ++L + + + L ++DELH+I
Sbjct: 381 GFFVEEYAGSKGKFPPIKRRGKKSLYIATIEKGNSLVNSLIETGRISSLGLVVVDELHMI 440
Query: 587 G-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGV 645
G G G +LE+ +A++ Y + + I+ +S +L N +DL +++ A + F P
Sbjct: 441 GEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLTNVEDLQKFLQAEYY-TSQFRPVE 495
Query: 646 RPVPLEIQ--IQGVD-----------ITN--FEARMKAMTKPTYTAIMQHAKNEKPALVF 690
L+I I VD + N + +K M A+ LVF
Sbjct: 496 LKEYLKINDAIYEVDSKAENGMTFSRLLNCQYSDTLKKMDPDHLVALATEVIPNHSCLVF 555
Query: 691 VPSRKYARLTAVDLMIYSCKD-SDQKSAFLLCSAKEVEPHVSIIQE----EMLRATLRLG 745
P++K A MI C+ S Q EV ++ I +L+ T+ G
Sbjct: 556 CPTKKNCENVAE--MI--CRFLSKQYLKHREKEKHEVIKNLKNISSGNLCPILKRTIPFG 611
Query: 746 VGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL--- 802
V Y H GL +++++ + G + + +S++ V L A R + L
Sbjct: 612 VAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRN 671
Query: 803 ---QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
QM+G AGR +D+ + +++ K+ + + P+E+ H + +
Sbjct: 672 QYKQMIGRAGRAGIDSIGESILILQEKDKQQVLELISR--PLENCYSHLVQE 721
Score = 130 (50.8 bits), Expect = 0.00035, P = 0.00035
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+L+E+ + G + + T+ LA GVNLPA VI++ V A L QM
Sbjct: 623 ERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQM 676
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIES 103
+GRAGR DS GE I+I + Q L L+++ P+E+
Sbjct: 677 IGRAGRAGIDSIGESILILQEKDKQQVLELISR--PLEN 713
>UNIPROTKB|E2RST3 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
Length = 1106
Score = 199 (75.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 99/412 (24%), Positives = 173/412 (41%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE +L+ +M I P A+ +++ FG EL
Sbjct: 361 LIYSL-PTSGGKTLVAEILMLQELLCRRRDVLM----ILPYVAIVQEKISGLS-SFGIEL 414
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
G V E +K K + I+T EK ++L + + + L ++DELH+I
Sbjct: 415 GFFVEEYAGSKGKFPPIKRRGKKSLYIATIEKGNSLVNSLIETGRISSLGLVVVDELHMI 474
Query: 587 G-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGV 645
G G G +LE+ +A++ Y + + I+ +S +L N +DL +++ A + F P
Sbjct: 475 GEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLTNVEDLQKFLQAEYY-TSQFRPVE 529
Query: 646 RPVPLEIQ--IQGVD-----------ITN--FEARMKAMTKPTYTAIMQHAKNEKPALVF 690
L+I I VD + N + +K M A+ LVF
Sbjct: 530 LKEYLKINDAIYEVDSKAENGMTFSRLLNCQYSDTLKKMDPDHLVALATEVIPNHSCLVF 589
Query: 691 VPSRKYARLTAVDLMIYSCKD-SDQKSAFLLCSAKEVEPHVSIIQE----EMLRATLRLG 745
P++K A MI C+ S Q EV ++ I +L+ T+ G
Sbjct: 590 CPTKKNCENVAE--MI--CRFLSKQYLKHREKEKHEVIKNLKNISSGNLCPILKRTIPFG 645
Query: 746 VGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL--- 802
V Y H GL +++++ + G + + +S++ V L A R + L
Sbjct: 646 VAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRN 705
Query: 803 ---QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
QM+G AGR +D+ + +++ K+ + + P+E+ H + +
Sbjct: 706 QYKQMIGRAGRAGIDSIGESILILQEKDKQQVLELISR--PLENCYSHLVQE 755
Score = 130 (50.8 bits), Expect = 0.00037, P = 0.00037
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+L+E+ + G + + T+ LA GVNLPA VI++ V A L QM
Sbjct: 657 ERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQM 710
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIES 103
+GRAGR DS GE I+I + Q L L+++ P+E+
Sbjct: 711 IGRAGRAGIDSIGESILILQEKDKQQVLELISR--PLEN 747
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 195 (73.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 96/362 (26%), Positives = 158/362 (43%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE-RKFGKE 527
L+ L PT GKT+ AE IL+ + +M I P A+ +++ W FG E
Sbjct: 262 LIYSL-PTSGGKTLVAEILILQELLCRQKDVLM----ILPYVAIVQEKV--WGLSSFGIE 314
Query: 528 LGMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 585
LG V E +K K + I+T EK AL + + + L ++DELH+
Sbjct: 315 LGFLVEEYAGSKGRFPPIKRRIKKSLYIATIEKGHALVNSLIETDRIDDLGLVVVDELHM 374
Query: 586 IG-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPG 644
IG G G VLE+ +A++ Y AS+ +V +S +L N DL +++ A + NF
Sbjct: 375 IGEGSRGAVLEMTLAKILY-ASK---NTHVVGMSATLNNVGDLQKFLQAEYY-TKNF--- 426
Query: 645 VRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDL 704
RPV L+ I+ D T +E KA T++ ++ K P A +T V +
Sbjct: 427 -RPVELKEYIKIRD-TIYEVDSKAENGFTFSRLLNF-KYSSSLEKADPDHIVALVTEV-I 482
Query: 705 MIYSC------KDSDQKSAFLLCSA--KEVEPHVSIIQEEM---------------LRAT 741
YSC K + + A ++C KE H ++++ LR T
Sbjct: 483 PKYSCLIFCPTKKNCENVATMVCKYLNKEFRAHREKEKQDLIKNLKDIGNGSICPVLRQT 542
Query: 742 LRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTL 801
+ GV Y H GL +++ + + G + + ++++ V L A R + +
Sbjct: 543 IPFGVAYHHSGLTNDERKSIEEAYSRGVLCLLACTATLAAGVNLPARRVILRAPYVASEF 602
Query: 802 LQ 803
L+
Sbjct: 603 LK 604
Score = 127 (49.8 bits), Expect = 0.00068, P = 0.00068
Identities = 47/179 (26%), Positives = 84/179 (46%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+ +E+ + G + +L TA LA GVNLPA VI++ V A L QM
Sbjct: 558 ERKSIEEAYSRGVLCLLACTATLAAGVNLPARRVILRAPYV------ASEFLKKNQYKQM 611
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNA-EIVLGTVQ 123
+GRAGR D+ GE I++ + L+ P+E+ + + L E+ + +L ++
Sbjct: 612 IGRAGRAGIDNAGESILVVQEKDKHLVRDLITS--PLENCYSNLLPEITKGMQYLLLSLV 669
Query: 124 NAKEACNWIE-YTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTA---ANVLDRNN 178
K A E Y+++ +L L + L + + + +LI ++D+N+
Sbjct: 670 GLKIAVTQEEVYSFMCHTLLGVQQQLLLKEKSLSEIVRDELENLIEKGLLKGKIMDQNS 728
>UNIPROTKB|Q8TDG4 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
Uniprot:Q8TDG4
Length = 1101
Score = 195 (73.7 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 87/345 (25%), Positives = 154/345 (44%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE +L+ + +M I P A+ +++ FG EL
Sbjct: 355 LIYSL-PTSGGKTLVAEILMLQELLCCRKDVLM----ILPYVAIVQEKISGLS-SFGIEL 408
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
G V E K EK + I+T EK +L + + + L ++DELH+I
Sbjct: 409 GFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMI 468
Query: 587 G-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGV 645
G G G LE+ +A++ Y + + I+ +S +L N +DL +++ A + F
Sbjct: 469 GEGSRGATLEMTLAKILYTSKTTQ----IIGMSATLNNVEDLQKFLQAEYY-TSQF---- 519
Query: 646 RPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705
RPV L+ ++ ++ T +E KA T++ ++ + K P A +T V +
Sbjct: 520 RPVELKEYLK-INDTIYEVDSKAENGMTFSRLLNY-KYSDTLKKMDPDHLVALVTEV-IP 576
Query: 706 IYSC------KDSDQKSAFLLCS--AKEVEPH-----VSIIQE----------EMLRATL 742
YSC K + + A ++C +KE H +I+ +L+ T+
Sbjct: 577 NYSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTI 636
Query: 743 RLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA 787
GV Y H GL +++++ + G + + +S++ V L A
Sbjct: 637 PFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPA 681
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 160 (61.4 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 57/208 (27%), Positives = 106/208 (50%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ AE IL+ R E +A++I P ++AK++ + F +E+G+ V
Sbjct: 115 APTSAGKTLVAELLILK---RVLEMR-KKALFILPFVSVAKEKKYYLQSLF-QEVGIKVD 169
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGP 592
T+ + I + T E+ + L R + + + + ++DELH++G G
Sbjct: 170 GYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 228
Query: 593 VLEVIVARMRYI-----------ASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNF 641
+LE+++ ++ YI AS + N ++IV +S +L N + + W+ A + +F
Sbjct: 229 LLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHT-DF 287
Query: 642 PPGVRPVPLEIQIQGVDITN--FEARMK 667
RPVPL ++ V + N +++ MK
Sbjct: 288 ----RPVPL---LESVKVGNSIYDSSMK 308
Score = 150 (57.9 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 49/149 (32%), Positives = 79/149 (53%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM-- 62
+R ++E F G ++VL +T+ L+ GVNLPA VII+ T ++ PLDI+
Sbjct: 424 ERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIR-TPIFGGR--------PLDILTY 474
Query: 63 -QMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQL-PIESQFVSKLAE-----LLNA 115
QM+GRAGR D+ GE I+I +SE ++L+ L P+ S + E ++ A
Sbjct: 475 KQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRA 534
Query: 116 --EIVLGTVQNAKEACN-WIEYTYLYTRM 141
EI++G V + + + + T+L M
Sbjct: 535 ILEIIVGGVASTSQDMHTYAACTFLAASM 563
Score = 112 (44.5 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 42/157 (26%), Positives = 67/157 (42%)
Query: 735 EEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH---LAT 791
+ +L+ T+ GV + H GL +++++ F G I+V +S++ V L A + T
Sbjct: 402 DSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRT 461
Query: 792 ---GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAF-PVESHLHH 847
G + L + T QM+G AGR +D + +++C K L + PV S L
Sbjct: 462 PIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQR 521
Query: 848 FLHDNFNAE--------IVAGVIENKQDAVDYLTWTF 876
+ IV GV QD Y TF
Sbjct: 522 REGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTF 558
Score = 39 (18.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 210 KESLEEPSAKINVLLQTYISQLKLEGLSLTS 240
KE+L++ K+ + Q ++ L+L G+ ++
Sbjct: 2066 KENLQDVFRKVEMPSQYCLALLELNGIGFST 2096
Score = 38 (18.4 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 1143 SENVRAGGEDTTLQV-VLERDL 1163
+EN + G +DT L ++++ L
Sbjct: 1337 TENAKLGAKDTNLAAGIMQKSL 1358
Score = 37 (18.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 261 SQLAEKALKLSKMVTKRMWSVQTPLRQ 287
+ L +L S + RMW +Q+ LR+
Sbjct: 1928 ASLVPPSLDPSLTLKDRMWYLQSCLRK 1954
>UNIPROTKB|F1RVE2 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
Uniprot:F1RVE2
Length = 1103
Score = 191 (72.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 87/345 (25%), Positives = 153/345 (44%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE +L+ + +M I P A+ +++ FG EL
Sbjct: 357 LIYSL-PTSGGKTLVAEILMLQELLCRRKDALM----ILPYVAIVQEKIAGLS-SFGIEL 410
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
G V E +K EK + I+T EK +L + + + L ++DELH+I
Sbjct: 411 GFFVEEYAGSKGKFPPIKRREKKSLYIATIEKGHSLVNSLIETGRIGGLGLVVVDELHMI 470
Query: 587 G-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGV 645
G G G LE+ +A++ Y + + IV +S +L N +DL ++ A + +
Sbjct: 471 GEGSRGATLEMTLAKILYTSKTTQ----IVGMSATLNNVEDLQAFLRAEYYSSW-----F 521
Query: 646 RPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705
RPV L+ ++ ++ T +E KA T++ ++ + K P A +T V +
Sbjct: 522 RPVELKEYLK-INDTIYEVDSKAENGMTFSRLLNY-KYSDTLKKLDPDHLVALVTEV-IP 578
Query: 706 IYSC------KDSDQKSAFLLCS--AKEVEPHVSIIQEEMLRA---------------TL 742
+SC K + + A ++C +KE H + E+L+ T+
Sbjct: 579 NHSCLVFCPTKKNCENVAEMICKILSKEYLKHREKEKHELLKNLKAISGGSVCPVLKHTI 638
Query: 743 RLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA 787
GV Y H GL +++++ AG + + +S++ V L A
Sbjct: 639 PFGVAYHHSGLTNDERKLLEEAHSAGVLCLLTCTSTLAAGVNLPA 683
Score = 131 (51.2 bits), Expect = 0.00029, P = 0.00029
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+L+E+ G + +L T+ LA GVNLPA VI++ V A L QM
Sbjct: 653 ERKLLEEAHSAGVLCLLTCTSTLAAGVNLPAQRVILRAPYV------AKEFLKRNQYKQM 706
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAE 111
+GRAGR DS GE I+I + Q L L+++ P+E+ + S+L +
Sbjct: 707 IGRAGRAGIDSVGESILIFQEKDKQQVLELISR--PLENCY-SRLVQ 750
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 138 (53.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF +G V++L +T A GVN+PA TV+ + ++ + L P + +QM
Sbjct: 594 KEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLE--MRNLKPGEYIQMA 651
Query: 66 GRAGRPQYDSYGEGIIIT-GHSELQYYLSLMNQQLP--IESQFVSKLAELL 113
GRAGR +D G II+ G L M LP ++SQF+ + A +L
Sbjct: 652 GRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAVIL 702
Score = 119 (46.9 bits), Expect = 3.5e-10, Sum P(4) = 3.5e-10
Identities = 47/156 (30%), Positives = 68/156 (43%)
Query: 683 NEKPALVFVPSRK-----YARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEM 737
N P + F SR A L +VDL K + QK FL C AK P +I Q +
Sbjct: 515 NMMPVVAFTLSRNRCDSNLAALQSVDLNTEKEKGAVQKF-FLQCLAKLKPPDRTIPQVLV 573
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT------ 791
L+ L G+G H G+ +E+V LF+ G +K+ + + V + A
Sbjct: 574 LKDALERGIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKK 633
Query: 792 --GRKMLILTT--LLQMMGHAGRPLLDNSEKCVILC 823
G +M L +QM G AGR D + +I+C
Sbjct: 634 FDGLEMRNLKPGEYIQMAGRAGRRGHDETGTAIIMC 669
Score = 108 (43.1 bits), Expect = 3.5e-10, Sum P(4) = 3.5e-10
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI S+ + R +Y +PI+AL+ Q+Y D+ + F K++G
Sbjct: 280 VFVAAHTSAGKTVVAEYAIA-----LSKRDLTRTIYTSPIKALSNQKYRDFRKTF-KDVG 333
Query: 530 MCVVELTVE 538
+ +L +E
Sbjct: 334 LITGDLQIE 342
Score = 73 (30.8 bits), Expect = 3.5e-10, Sum P(4) = 3.5e-10
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 579 IIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASS-H 636
I DE+H I + G V E ++ + + I+ LS ++ N +L +W+G++
Sbjct: 373 IFDEVHYINNPERGHVWEEVIILL-------PEHVNIIMLSATVPNTLELADWVGSTKKR 425
Query: 637 GVFNFPPGVRPVPL 650
V+ RPVPL
Sbjct: 426 KVYVISTLKRPVPL 439
Score = 48 (22.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 539 TAMDLKLLEKGQIIISTPE-KWDALSRRWKQRK 570
T +D+K ++ I ST + DA+ R W+QR+
Sbjct: 865 TVLDIKAIDIISITKSTLKVDADAIIRNWEQRQ 897
Score = 37 (18.1 bits), Expect = 3.5e-10, Sum P(4) = 3.5e-10
Identities = 20/96 (20%), Positives = 40/96 (41%)
Query: 878 LTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYY 937
L Q YY + ++ R+++ + +T+ D++A II L +I ++
Sbjct: 837 LQQGELYYKILSLTPRNMTFQPVGIGGHTVLDIKAI-DIISITKSTLKVDADAIIRNW-- 893
Query: 938 ISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLP 973
+ +E F S S + +K + E+ Y P
Sbjct: 894 -EQRQLERFKDSPPSGSVVKAVTELNQLNESYIDNP 928
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 141 (54.7 bits), Expect = 9.6e-10, Sum P(3) = 9.6e-10
Identities = 58/271 (21%), Positives = 128/271 (47%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ +E +L+ E G + + I P ++ +++ + + G V
Sbjct: 256 APTSAGKTLVSEILMLKT---VLERG-KKVLLILPFISVVREKMF-YMQDLLTPAGYRV- 309
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GP 592
E E + I T EK +++ + ++ ++ + + ++DE+HLI +G G
Sbjct: 310 EGFYGGYTPPGGFESLHVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGY 369
Query: 593 VLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEI 652
+LE+++A++ Y++ + +I+++ +S +L N + L W+ A + + N+ RPV L+
Sbjct: 370 ILELLLAKILYMSRRNGLQIQVITMSATLENVQLLQSWLDAELY-ITNY----RPVALKE 424
Query: 653 QIQGVDITNFEARMKAMTKPT-YTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKD 711
I+ V ++ R+K + +++ +N+ + + +V ++ KD
Sbjct: 425 MIK-VGTVIYDHRLKLVRDVAKQKVLLKGLENDSDDVALLCIETLLEGCSV-IVFCPSKD 482
Query: 712 SDQKSAFLLCSAKEVEPHVSIIQEEMLRATL 742
+ A L +A V+ + + LR L
Sbjct: 483 WCENLAVQLATAIHVQIKSETVLGQRLRTNL 513
Score = 141 (54.7 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 45/127 (35%), Positives = 67/127 (52%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R ++E F G ++VLV+T+ L+ GVNLPA V+I+ +P G ++S L QM
Sbjct: 555 ERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIR-----SPLFGG-KQMSSLTYRQM 608
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQL-PIESQF-VSKLAELLNA--EIVLG 120
+GRAGR D+ GE I+I + L+ +L PI S + L A E++
Sbjct: 609 IGRAGRMGKDTLGESILICNEINARMGRDLVVSELQPITSCLDMDGSTHLKRALLEVISS 668
Query: 121 TVQNAKE 127
V N KE
Sbjct: 669 GVANTKE 675
Score = 97 (39.2 bits), Expect = 9.6e-10, Sum P(3) = 9.6e-10
Identities = 31/132 (23%), Positives = 61/132 (46%)
Query: 750 HEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT------GRKMLILTTLLQ 803
H GL +++++ F+AG +KV V +S++ V L A G K + T Q
Sbjct: 548 HAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRSPLFGGKQMSSLTYRQ 607
Query: 804 MMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY-EAFPVESHLHHFLHDNFNA---EIVA 859
M+G AGR D + +++C+ + + + E P+ S L + E+++
Sbjct: 608 MIGRAGRMGKDTLGESILICNEINARMGRDLVVSELQPITSCLDMDGSTHLKRALLEVIS 667
Query: 860 GVIENKQDAVDY 871
+ N ++ +D+
Sbjct: 668 SGVANTKEDIDF 679
Score = 56 (24.8 bits), Expect = 9.6e-10, Sum P(3) = 9.6e-10
Identities = 23/101 (22%), Positives = 44/101 (43%)
Query: 931 MIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQR 990
MI+ ++ +YK I +++ + + + KG +E + Y + I E L +
Sbjct: 1906 MISDQFHQAYKGIRDYTTRVVNFARSKGFVETITGRRRYLE-NINSDVEHLKNQAERQAV 1964
Query: 991 FSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLL 1031
S D + NA+L+ ME N++ +EK+ L
Sbjct: 1965 NSTIQGSAAD--IAKNAILK-------MEKNIERYREKLAL 1996
Score = 42 (19.8 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 1001 PHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGW 1049
P ++ LL A F M + Q+K LL + Q + I+++ W
Sbjct: 1814 PTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAH-W 1861
Score = 40 (19.1 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 697 ARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHV 730
A LTA + I SC ++D ++ S++ EP V
Sbjct: 1296 AALTAAESKIASCTEAD-----VIPSSQPKEPEV 1324
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 149 (57.5 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 46/137 (33%), Positives = 72/137 (52%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R++VE + G V+VL +T+ LA GVNLPA VI + P G + QM
Sbjct: 847 EREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR-----QPMIGR-DFIDGTRYKQM 900
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLP-IESQFVSKLAELLNA--EIVLG- 120
GRAGR D+ G+ ++I EL+ ++L+N+ P ++S + +A E+V G
Sbjct: 901 SGRAGRTGIDTKGDSVLICKPGELKRIMALLNETCPPLQSCLSEDKNGMTHAILEVVAGG 960
Query: 121 TVQNAKEACNWIEYTYL 137
VQ AK+ ++ T L
Sbjct: 961 IVQTAKDIHRYVRCTLL 977
Score = 137 (53.3 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 72/297 (24%), Positives = 129/297 (43%)
Query: 612 IRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARM-KAMT 670
++IV +S ++ N + +W+ A+ + F P P+ I++ G I N + + + +
Sbjct: 690 LQIVGMSATMPNVGAVADWLQAALYQT-EFRPV--PLEEYIKV-GSTIYNKKMEVVRTIP 745
Query: 671 K--------PTYTAIM--QHAKNEKPALVFVPSRKYARLTA--VDLMIYSCK-DSD-QKS 716
K P + + + + L+F SRK TA + +I + + D + S
Sbjct: 746 KAADMGGKDPDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENS 805
Query: 717 AFL-LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVM 775
F+ + SA + + +L TL GV Y H GL ++E+V T + G ++V
Sbjct: 806 EFMDIRSAIDALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTA 865
Query: 776 SSSMCWEVPLTAHLAT------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKE 829
+S++ V L A GR + T QM G AGR +D V++C +
Sbjct: 866 TSTLAAGVNLPARRVIFRQPMIGRDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGELK 925
Query: 830 YYKKFLYEAFP-VESHLHHFLHDNFNA--EIVAG-VIENKQDAVDYLTWTFRLTQNP 882
L E P ++S L + +A E+VAG +++ +D Y+ T + P
Sbjct: 926 RIMALLNETCPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRCTLLNSTKP 982
Score = 108 (43.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 37/135 (27%), Positives = 67/135 (49%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
A T +GK+ AE +LR R TG M A+ + P ++ ++ E + LG V
Sbjct: 538 ASTSAGKSFVAEVLMLR---RVIRTGKM-ALLVLPYVSICAEKAEHLEVLL-EPLGKHVR 592
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GP 592
L + + + T EK ++L R + + ++ + +IDELH++G Q G
Sbjct: 593 SYYGNQGGGT-LPKDTSVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGY 651
Query: 593 VLEVIVARMRYIASQ 607
+LE+++ ++RY A +
Sbjct: 652 LLELMLTKLRYAAGE 666
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 28/121 (23%), Positives = 49/121 (40%)
Query: 871 YLTWTFRLTQNPNYYN-LQGVSHRHLSD-HLSELVENTISDLEATRSIIMEDDMDLCPSN 928
+L T Q Y L+G R LS E + + +A S+ D+
Sbjct: 2005 WLNETISFCQEKGYIQTLKG-RRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADII--K 2061
Query: 929 YGMIASYYYISYKTIECFSSSLTSKTK---MKGLLEVLASASEYAQLPIRPGEEELVRRL 985
MI Y I+ + ++ +SS +S+T+ +KG +L + L + P +L L
Sbjct: 2062 IAMINIYSAIA-EDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAML 2120
Query: 986 I 986
+
Sbjct: 2121 L 2121
Score = 40 (19.1 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 403 PVTALQNPSYEALYQNYKLFNPIQTQV 429
P+ P++E Y+ + +P++ V
Sbjct: 1059 PINVGVEPNWELYYERFMELSPLEQSV 1085
Score = 38 (18.4 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 243 SAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIP 292
+AGR S + + GW L K V+ + V+ + + IP
Sbjct: 1181 NAGRFSSMVSVFCERLGWHDLEGLVAKFQNRVS---FGVRAEIVELTSIP 1227
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 144 (55.7 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 56/230 (24%), Positives = 116/230 (50%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ AE IL+ R ET +A++I P ++AK++ + F +E+G+ V
Sbjct: 116 APTSAGKTLVAELLILK---RVLETR-KKALFILPFVSVAKEKKYYLQSLF-QEVGIKVD 170
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGP 592
T+ + + + T E+ + L R + + + ++DELH++G G
Sbjct: 171 GYMGSTSPTGRFSSL-DVAVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSHRGY 229
Query: 593 VLEVIVARMRYI-----------ASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNF 641
+LE+++ ++ ++ AS + ++IV +S +L N + + W+ A + +F
Sbjct: 230 LLELLLTKVCFVTRKSASCQADSASALACAVQIVGMSATLPNLQLVASWLNAELYHT-DF 288
Query: 642 PPGVRPVPLEIQIQGVDITN--FEARMKAMTKPTYTAIMQHAKNEKPALV 689
RPVPL ++ + + N +++ MK + + + ++Q K ++ +V
Sbjct: 289 ----RPVPL---LESIKVGNSIYDSSMKLVRE--FQPLLQ-VKGDEDHIV 328
Score = 114 (45.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 51/177 (28%), Positives = 80/177 (45%)
Query: 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV 772
DQKS LL +++ S + + +L+ T+ GV + H GL +++++ F G I+V
Sbjct: 384 DQKS--LLEVIDQLKRSPSGL-DSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRV 440
Query: 773 CVMSSSMCWEVPLTAH---LAT---GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
+S++ V L A + T G + L + T QM+G AGR +D + +++C
Sbjct: 441 LAATSTLSSGVNLPARRVIIRTPVFGGQPLDILTYKQMVGRAGRKGVDTMGESILVCKNS 500
Query: 827 HKEYYKKFLYEAF-PVESHLH---HFLHDNFNA--EI-VAGVIENKQDAVDYLTWTF 876
K L + PV S L A EI V+GV QD Y TF
Sbjct: 501 EKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDMQTYAACTF 557
Score = 38 (18.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1079 HFTKDLAKRCQENPGRSIETV 1099
HF +D K C+ + G +ET+
Sbjct: 2375 HFMRDTVKNCRRD-G-FVETI 2393
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 144 (55.7 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 56/230 (24%), Positives = 116/230 (50%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ AE IL+ R ET +A++I P ++AK++ + F +E+G+ V
Sbjct: 116 APTSAGKTLVAELLILK---RVLETR-KKALFILPFVSVAKEKKYYLQSLF-QEVGIKVD 170
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGP 592
T+ + + + T E+ + L R + + + ++DELH++G G
Sbjct: 171 GYMGSTSPTGRFSSL-DVAVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSHRGY 229
Query: 593 VLEVIVARMRYI-----------ASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNF 641
+LE+++ ++ ++ AS + ++IV +S +L N + + W+ A + +F
Sbjct: 230 LLELLLTKVCFVTRKSASCQADSASALACAVQIVGMSATLPNLQLVASWLNAELYHT-DF 288
Query: 642 PPGVRPVPLEIQIQGVDITN--FEARMKAMTKPTYTAIMQHAKNEKPALV 689
RPVPL ++ + + N +++ MK + + + ++Q K ++ +V
Sbjct: 289 ----RPVPL---LESIKVGNSIYDSSMKLVRE--FQPLLQ-VKGDEDHIV 328
Score = 114 (45.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 51/177 (28%), Positives = 80/177 (45%)
Query: 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV 772
DQKS LL +++ S + + +L+ T+ GV + H GL +++++ F G I+V
Sbjct: 384 DQKS--LLEVIDQLKRSPSGL-DSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRV 440
Query: 773 CVMSSSMCWEVPLTAH---LAT---GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
+S++ V L A + T G + L + T QM+G AGR +D + +++C
Sbjct: 441 LAATSTLSSGVNLPARRVIIRTPVFGGQPLDILTYKQMVGRAGRKGVDTMGESILVCKNS 500
Query: 827 HKEYYKKFLYEAF-PVESHLH---HFLHDNFNA--EI-VAGVIENKQDAVDYLTWTF 876
K L + PV S L A EI V+GV QD Y TF
Sbjct: 501 EKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDMQTYAACTF 557
Score = 38 (18.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1079 HFTKDLAKRCQENPGRSIETV 1099
HF +D K C+ + G +ET+
Sbjct: 2382 HFMRDTVKNCRRD-G-FVETI 2400
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 130 (50.8 bits), Expect = 0.00042, P = 0.00042
Identities = 36/112 (32%), Positives = 59/112 (52%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
++++E LF G V+VL +T A GVN+PA TV+ + ++ + L P + +QM
Sbjct: 653 KEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGT--GFRNLLPGEYIQMA 710
Query: 66 GRAGRPQYDSYGEGIII--TG-HSELQYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D+ G II+ G H + + ++ + + SQF +LN
Sbjct: 711 GRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQFRLTYTMILN 762
Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 39/130 (30%), Positives = 68/130 (52%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI S+ + R +Y +PI+AL+ Q++ D++ FG ++G
Sbjct: 336 VFVAAHTSAGKTVVAEYAIA-----LSQKHMTRTIYTSPIKALSNQKFRDFKNTFG-DVG 389
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-G 588
+ LT D++L +G +I T E S + + ++ + I DE+H I
Sbjct: 390 L----LTG----DVQLNPEGSCLIMTTEI--LRSMLYNGSEVIRDLEWVIFDEVHYINDA 439
Query: 589 QGGPVLEVIV 598
+ G V E ++
Sbjct: 440 ERGVVWEEVL 449
Score = 112 (44.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 48/160 (30%), Positives = 74/160 (46%)
Query: 682 KNEKPALVFVPSR----KYAR-LTAVDLMIYSCKDSDQKSAFLLCSAKEVEP-HVSIIQE 735
+ + P + F SR + AR LT++DL S + S+ S FL S + + Q
Sbjct: 573 RQQTPVVAFTFSRTRCDENARSLTSLDLTT-SIEKSEIHS-FLQKSLTRLRGGDRQLPQI 630
Query: 736 EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA-------- 787
++R L+ G+G H G+ +EV+ LF G +KV + + V + A
Sbjct: 631 LLMRDLLKRGIGVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSI 690
Query: 788 --HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHA 825
H TG + L+ +QM G AGR LD + +ILC A
Sbjct: 691 RKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTVIILCKA 730
Score = 89 (36.4 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 542 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVAR 600
D++L +G +I T E S + + ++ + I DE+H I + G V E ++
Sbjct: 394 DVQLNPEGSCLIMTTEI--LRSMLYNGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIM 451
Query: 601 MRYIASQVENKIRIVALSTSLANAKDLGEWIGA-SSHGVFNFPPGVRPVPLE 651
+ + I+ LS ++ NA + EWIG ++ RPVPLE
Sbjct: 452 L-------PEHVSIILLSATVPNAVEFSEWIGRIKKRHIYVISTIKRPVPLE 496
Score = 60 (26.2 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 369 LNFTVPIYEPLPPQHLILPEKFPPPTELLDLQL-LPVTALQNPSYEALYQNYKLFN 423
+ T+P +PLPP H LP PP LDL+ + L++P++ ++ FN
Sbjct: 30 ITHTLPKNKPLPP-HSTLPHGLPPTC--LDLKTEVEKRFLRDPAWLPVHDVDDAFN 82
>DICTYBASE|DDB_G0286131 [details] [associations]
symbol:sec63 "protein transport protein SEC63"
species:44689 "Dictyostelium discoideum" [GO:0031204
"posttranslational protein targeting to membrane, translocation"
evidence=IEA] [GO:0008565 "protein transporter activity"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR027137 InterPro:IPR001623 dictyBase:DDB_G0286131
Pfam:PF00226 GO:GO:0006457 EMBL:AAFI02000085 Gene3D:1.10.287.110
PRINTS:PR00625 SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 eggNOG:COG5407
KO:K09540 PANTHER:PTHR24075 RefSeq:XP_637857.1
ProteinModelPortal:Q54M91 EnsemblProtists:DDB0305093 GeneID:8625454
KEGG:ddi:DDB_G0286131 InParanoid:Q54M91 OMA:LASSVCI Uniprot:Q54M91
Length = 814
Score = 134 (52.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 46/217 (21%), Positives = 93/217 (42%)
Query: 938 ISYKTIECFSSSLTSKTKMKGLLEVLASASEY-AQLPIRPGEEELVRRLINH--QRFSFA 994
I +++ + + T++K ++E+LA+ +EY L R ++E ++ L +
Sbjct: 238 IEQQSLALYYHVIDGTTRLKSMIEILAATTEYKTSLVERKSDDENLKNLFKSIPDAYKVK 297
Query: 995 NPKCTDPH-VKANALLQAHFSA-RHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSL 1052
+ P+ VK LL AH + M L+ D +++ + L V L
Sbjct: 298 KARFNAPYIVKGTILLYAHLCRIKDMPQTLRDDLNQIIKTYRHYLTGAFQVTREKRQLVG 357
Query: 1053 ALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSI---ETVFXXXXXXXXX 1109
+ +++SQ + Q WE D L QLPH +A++ + N + I + +
Sbjct: 358 LVELVKLSQCIMQSAWE-DQSLKQLPHLDSFMAQQLKSNHVQDIAKFKAMSEEKRKELLT 416
Query: 1110 XXXXXQMSDVQLLDIARFCNRFP-NIDMSYKVQDSEN 1145
++D ++ DI + P + + +++ SEN
Sbjct: 417 KVGGTALNDAKIKDIENILEKIPCQVGIKWRIT-SEN 452
Score = 98 (39.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 1181 KEEGWWLVVDDAKTNQLLAI-KRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCD 1239
K +W+++ + + N+L+A+ K + + K F + E G Y+L MCD Y+GCD
Sbjct: 616 KPVNFWILMGNRQKNELVALGKTETFTPGTIVKYPFLSAAEIGTAHYSLYVMCDGYLGCD 675
Query: 1240 QEYSFTVDV 1248
E ++++
Sbjct: 676 VETDVSINL 684
>TAIR|locus:2090744 [details] [associations]
symbol:AT3G28870 "AT3G28870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 InterPro:IPR004179 SMART:SM00973
InterPro:IPR013194 Pfam:PF08295 IPI:IPI00541068 RefSeq:NP_189529.1
UniGene:At.53548 ProteinModelPortal:F4J0F5 SMR:F4J0F5
EnsemblPlants:AT3G28870.1 GeneID:822521 KEGG:ath:AT3G28870
ArrayExpress:F4J0F5 Uniprot:F4J0F5
Length = 355
Score = 170 (64.9 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 31/52 (59%), Positives = 40/52 (76%)
Query: 1201 KRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAG 1252
K + + K++ KLDF P E G+K+YTL FMCDSY+GCDQEYSF+VD K +G
Sbjct: 297 KGLGQELKAKVKLDFTVPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDDKGSG 348
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 123 (48.4 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 65/289 (22%), Positives = 127/289 (43%)
Query: 667 KAMTKPTYTA--IMQ--HAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF--LL 720
K M K TY I+Q H++N P ++F S+K + A + +K L
Sbjct: 486 KKMRKTTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSDTEKEVIKELY 545
Query: 721 CSAKEV--EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS- 777
+A + + S+ Q + + L G+G H GL +E++ +F+ +KV +
Sbjct: 546 ENAIRILADDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESLLKVLFSTET 605
Query: 778 -SMCWEVPLTAHLAT------GRKMLILTT--LLQMMGHAGRPLLDNSEKCVILCHAP-H 827
SM +P + T G + ++T+ +QM G AGR LD+ +I+ P H
Sbjct: 606 FSMGINMPAKTVVFTSLTKFDGLEKRLITSGEYIQMAGRAGRRGLDDRGIVIIMLDTPLH 665
Query: 828 -KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYN 886
+E +K F+ EA + S H + N + G+ ++ +++ +N +
Sbjct: 666 WREAHKLFVGEANRLVSQFHLGYNMILNLLRIEGITPEFMIERSFIQ--YQMKKNLSQKI 723
Query: 887 LQGVSHRHLSDHLSELVEN-TISDLEATRSIIMEDDM--DLCPSNYGMI 932
L + + + +H+ ++ + T L+ + I +D++ + +NY I
Sbjct: 724 L---AKKKVEEHIKQIFNHLTNIHLDENNNEITKDELLTKIMYNNYEQI 769
Score = 108 (43.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 43/162 (26%), Positives = 79/162 (48%)
Query: 470 VLQLAPTGSGKTICAEFAI---LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK 526
VL A T +GKT+ AE+AI LR+ QR +Y +PI+AL+ Q+Y D +F K
Sbjct: 272 VLVSAHTSAGKTVIAEYAIALGLRDKQRV--------IYTSPIKALSNQKYRDLGEEF-K 322
Query: 527 ELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
++G+ ++++ + II+ T E S ++ ++V I DE+H +
Sbjct: 323 DVGLITGDISINP--------EASIIVMTTEI--LRSMLYRGSSLTKEVKWVIFDEIHYM 372
Query: 587 GGQGGPVL--EVIV-----ARMRYIASQVENKIRIVALSTSL 621
+ V+ E I+ R ++++ + N I+ +S+
Sbjct: 373 RDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSI 414
Score = 63 (27.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 24/112 (21%), Positives = 46/112 (41%)
Query: 542 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVAR 600
D+ + + II+ T E S ++ ++V I DE+H + + G + E +
Sbjct: 330 DISINPEASIIVMTTEI--LRSMLYRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEETIIL 387
Query: 601 MRYIASQVENKIRIVALSTSLANAKDLGEWIGA-SSHGVFNFPPGVRPVPLE 651
+ + +R + LS ++ N EW+ + S RP PL+
Sbjct: 388 LPLM-------VRFIFLSATIPNGIQFAEWVSSIKSQACHIVYTDYRPTPLQ 432
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 148 (57.2 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 46/185 (24%), Positives = 90/185 (48%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI H+ + + +Y +PI+AL+ Q++ D++ F K++
Sbjct: 307 VFVAAHTSAGKTVVAEYAIAMAHRNMT-----KCIYTSPIKALSNQKFRDFKETF-KDID 360
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG- 588
+ ++ T D+++ + +I T E S ++ ++ V I DE+H +
Sbjct: 361 VGLI-----TG-DVQINPEANCLIMTTEI--LRSMLYRGADLIRDVEFVIFDEVHYVNDI 412
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRP 647
G V E ++ + + ++ + LS ++ N + W+G + ++ RP
Sbjct: 413 DRGVVWEEVIIML-------PDHVKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRP 465
Query: 648 VPLEI 652
VPLEI
Sbjct: 466 VPLEI 470
Score = 73 (30.8 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 671 KPTYTAIMQHAKNEK--PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV-- 726
K T+ ++ + K+ PA+VFV S+K A L ++ +KS + + V
Sbjct: 564 KNTWIDLVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEIHMFIDRAVGR 623
Query: 727 --EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
+ + Q +R L G+ H GL +E + LF +KV + + +
Sbjct: 624 LKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVKVLFATETFAMGLN 683
Query: 785 L---TAHLATGRKM-------LILTTLLQMMGHAGRPLLDNSEKCVILCH 824
L T ++ RK L+ QM G AGR LD + +++ +
Sbjct: 684 LPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRGLDKTGTVIVMAY 733
>UNIPROTKB|F1RT28 [details] [associations]
symbol:SEC63 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031204 "posttranslational protein targeting to
membrane, translocation" evidence=IEA] [GO:0008565 "protein
transporter activity" evidence=IEA] InterPro:IPR027137
InterPro:IPR001623 Pfam:PF00226 GO:GO:0006457 Gene3D:1.10.287.110
PRINTS:PR00625 SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
OMA:TIENCMK PANTHER:PTHR24075 GeneTree:ENSGT00390000001965
EMBL:CU207397 Ensembl:ENSSSCT00000004844 Uniprot:F1RT28
Length = 759
Score = 129 (50.5 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 54/187 (28%), Positives = 80/187 (42%)
Query: 996 PKCTDPH-VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLS--- 1051
P T P+ +KA LL +H + + L+ DQ+ +L LLQ MV+VI ++
Sbjct: 291 PPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIIMARSR 350
Query: 1052 ---------LALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVF 1100
LA L M++SQM QG+ + S LLQLPH +D +R + I+T+
Sbjct: 351 EEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQ 410
Query: 1101 XXXXXXXXXXXXXXQ-MSDVQLLDIARFCNRFPNIDMSYKVQ-----DSENVRAGGEDTT 1154
+ D + ++ FP + M K Q DS N+ G T
Sbjct: 411 DLVSLKESDRHNLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
Query: 1155 LQVVLER 1161
L V L R
Sbjct: 471 L-VKLTR 476
Score = 93 (37.8 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 34/103 (33%), Positives = 48/103 (46%)
Query: 951 TSKTKMKGLLEVLASASEY-----AQLPIRPGEEELVRRLINHQ---RFSFANPKCTDPH 1002
T MK L+ VLA ASE+ RP + L+ +LI P T P+
Sbjct: 238 TRNMDMKRLIMVLAGASEFDPQYNKDATSRPTDNILIPQLIREIGSINLKKNEPPLTCPY 297
Query: 1003 -VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVI 1044
+KA LL +H + + L+ DQ+ +L LLQ MV+VI
Sbjct: 298 SLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVI 340
Score = 82 (33.9 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+++ +L+ L + KK
Sbjct: 636 PVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEISLKSEKKDKKTKKKKNE 695
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
SY+G Q ++V EA
Sbjct: 696 TEHLPSYLGLMQIKPLKLEVHEA 718
Score = 51 (23.0 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 253 EIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+IVL GW+ A K+SK T R + P N P + +++K+
Sbjct: 76 KIVLLAGWALFLFLAYKVSK--TDREYQEYNPYEVLNLDPGATVAEIKKQ 123
>WB|WBGene00001047 [details] [associations]
symbol:dnj-29 species:6239 "Caenorhabditis elegans"
[GO:0031072 "heat shock protein binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] InterPro:IPR001623
Pfam:PF00226 Gene3D:1.10.287.110 SMART:SM00271 SUPFAM:SSF46565
PROSITE:PS50076 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HSSP:P25685 eggNOG:COG5407 HOGENOM:HOG000037933
KO:K09540 OMA:TIENCMK GeneTree:ENSGT00390000001965 EMBL:AL032652
PIR:D87965 PIR:T27276 RefSeq:NP_493463.1 ProteinModelPortal:Q9U1V9
SMR:Q9U1V9 STRING:Q9U1V9 PaxDb:Q9U1V9 PRIDE:Q9U1V9
EnsemblMetazoa:Y63D3A.6b.1 EnsemblMetazoa:Y63D3A.6b.2 GeneID:173278
KEGG:cel:CELE_Y63D3A.6 UCSC:Y63D3A.6b CTD:173278 WormBase:Y63D3A.6b
InParanoid:Q9U1V9 NextBio:878975 ArrayExpress:Q9U1V9 Uniprot:Q9U1V9
Length = 752
Score = 119 (46.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 1167 TELGPVYSNRYPKAKEEGWWLVV----DDAKTNQLLAIKRV--SLQRKSRAKLDFAAPVE 1220
T+ V++ +P K E WW+ V K+ QLL ++ +L + + FAAP
Sbjct: 627 TQTHTVHAPFFPTEKFEWWWITVAYVDKKEKSRQLLTFPQLVKTLIDEQTIDIRFAAPPH 686
Query: 1221 GGKKTYTLDFMCDSYMGCDQEYSFTVDVKEA 1251
G TY L DSYM + F +DVKEA
Sbjct: 687 KGIYTYNLSVKSDSYMDAEYSVDFKIDVKEA 717
Score = 91 (37.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 44/203 (21%), Positives = 85/203 (41%)
Query: 999 TDPH-VKANALLQAHFSARHMEGN---LKLDQEKVLLSASRLLQAMVDV------ISSNG 1048
+ P+ +K+ LL A+ S +E L+ DQ ++ R ++ MV+ S +
Sbjct: 297 SQPYALKSRVLLHAYLSRLPLESQNDALEEDQSYIITRILRFVEEMVNCSQNLMNYSQHT 356
Query: 1049 WLSLALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXX 1106
+S+ +++ M Q +W+ +S LLQLPH T + ++ S +
Sbjct: 357 KISIETFDNLLKLQPMFVQALWQKNSPLLQLPHITDYNLQHLRKKRVFSCHDL--AVMDA 414
Query: 1107 XXXXXXXXQMSDVQLLDIARFCNRFPNIDMSYKV----QDSENVRAGGEDTTLQVVLERD 1162
+S+ + D+ + P + + K +D ++ G TL+V + R
Sbjct: 415 ETRRSVLRSLSNEEYRDVMVVLSMMPRLQIETKTVVEGEDDKHELTAGCVVTLKVTMRRS 474
Query: 1163 -LGGRTELGPVYSNRYPKAKEEG 1184
L E G +++Y K E+G
Sbjct: 475 RLIDPQEAG--LADQYKKYAEDG 495
Score = 78 (32.5 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 38/138 (27%), Positives = 63/138 (45%)
Query: 184 RKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSA-KINVLLQTYISQLKLEGLS--LTS 240
R++ ++ ++ ++A + D+ ++ L +P A K VLL Y+S+L LE + L
Sbjct: 270 RETDDYEVPRLMKQIAGVNDKGK---EQPLSQPYALKSRVLLHAYLSRLPLESQNDALEE 326
Query: 241 DMS--AGRLSRALFEIVL----KRGWSQLA-------EKALKLSKMVTKRMWSVQTPLRQ 287
D S R+ R + E+V +SQ + LKL M + +W +PL Q
Sbjct: 327 DQSYIITRILRFVEEMVNCSQNLMNYSQHTKISIETFDNLLKLQPMFVQALWQKNSPLLQ 386
Query: 288 FNGIPNEILMKLEKKDFF 305
I + L L KK F
Sbjct: 387 LPHITDYNLQHLRKKRVF 404
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 120 (47.3 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 50/171 (29%), Positives = 80/171 (46%)
Query: 471 LQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQR----YCDWERKFGK 526
L +APT +GKT + + I R+S+ V+ VY+AP +AL Q Y + K K
Sbjct: 803 LIIAPTSAGKTFVSYYCI-EKVLRSSDNDVV--VYVAPSKALINQVCGSVYARFRNKSMK 859
Query: 527 ELGMCVV-ELTVETAMDLKLLEKGQIIISTPEKWDAL--SRRWKQRKYVQQVSLFIIDEL 583
G+ + LT E + + + Q++I+ PE L SR +K+V + + DE+
Sbjct: 860 R-GISLFGTLTQEYSQNAM---QCQVLITVPECLQELMLSRTPAVQKFVSHIKYVVFDEV 915
Query: 584 HLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGAS 634
H IG E + + Q +ALS ++ NA L EW+ +S
Sbjct: 916 HSIGASE----ESHIWEQLLLLIQCP----FLALSATIGNANKLHEWLNSS 958
Score = 102 (41.0 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 29/90 (32%), Positives = 43/90 (47%)
Query: 736 EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT-GRK 794
++L G+GY H GLN ++ V LF +G + V +S++ V + G
Sbjct: 1272 QVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMFGVD 1331
Query: 795 MLILTTLL--QMMGHAGRPLLDNSEKCVIL 822
L LT LL QM G AGR D+S + +
Sbjct: 1332 TLQLTPLLYRQMSGRAGRRGFDHSGNVIFM 1361
Score = 54 (24.1 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 34/129 (26%), Positives = 52/129 (40%)
Query: 935 YYYISYKTIECFSSSL----TSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQR 990
+ Y+ K +CF + T++ G+LEVLA+ + L + P E L N Q
Sbjct: 1488 FIYLMQK--KCFHQLIKSYDTAEQAQLGILEVLANL--FTNLRMTPFHERS-DNLENVQV 1542
Query: 991 FSFANPKCTDPHVK-----ANALLQAHFSARHMEGNL---------KLDQEKVLLSASRL 1036
P P+V+ L + +A +GNL KLD E V L+ L
Sbjct: 1543 TLRGLPSLLKPYVEEYNSTVTGLYKRFMAASSQDGNLFDPSFAVSGKLDSESVSLTEDFL 1602
Query: 1037 LQAMVDVIS 1045
+ + D S
Sbjct: 1603 VAPLFDQYS 1611
Score = 37 (18.1 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 324 DFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQY 362
D +WD ++ F +I DN + + L KQ+
Sbjct: 206 DPEWDKLLNDLTPSFLMISTDNVTQNVCASQEIDLTKQF 244
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 120 (47.3 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 45/159 (28%), Positives = 81/159 (50%)
Query: 441 LVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGV 500
LV ++RK F+ P +Q + + A T +GKT+ AE+AI +A +T
Sbjct: 281 LVPTMARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIALC--QAHKT-- 336
Query: 501 MRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWD 560
RAVY +PI+AL+ Q++ D+++ FG ++G+ T D++L + +I T E
Sbjct: 337 -RAVYTSPIKALSNQKFRDFKQIFG-DVGLV-------TG-DIQLHPEAACLIMTTEI-- 384
Query: 561 ALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIV 598
S + + ++ + + DE+H I + G V E ++
Sbjct: 385 LRSMLYNGSEVIRDLEWVVFDEVHYINNEERGHVWEEVL 423
Score = 92 (37.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 48/193 (24%), Positives = 78/193 (40%)
Query: 671 KPTYTAIMQHAK--NEKPALVFVPSRKY----ARLTAVDLMIYSCKDSDQKSAFLLCSAK 724
K Y ++ + K ++ P +VFV SRK A++ A + + + F C +
Sbjct: 547 KNIYLNLINYMKCSDQLPMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQR 606
Query: 725 EVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVP 784
+ Q +R G H G+ +EVV LF+ G +K+ + + V
Sbjct: 607 LKGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVN 666
Query: 785 LTA----------HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCH---APHKEYY 831
+ A H T R+ML QM G AGR LD + +I+C P +
Sbjct: 667 MPARCVVFDSIMKHDGTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVPQPDVL 726
Query: 832 KKFLY-EAFPVES 843
K + +A +ES
Sbjct: 727 KNLISGQALRLES 739
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 134 (52.2 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 47/164 (28%), Positives = 80/164 (48%)
Query: 473 LAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL---- 528
+APT SGKT A + + + S GV+ VY+AP +AL Q +F K L
Sbjct: 780 VAPTSSGKTY-ASYYCMEKVLKESNEGVV--VYVAPTKALVNQVAATVHNRFTKSLPNGE 836
Query: 529 GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 588
+C V T + D Q++I+ P ++ L ++ +V+++ I DE+H +GG
Sbjct: 837 ALCGV-FTRDYRHDAL---NCQVLITVPACFEILLLSPHRQAWVKRIRYVIFDEVHCLGG 892
Query: 589 Q-GGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI 631
+ G V E ++ +R +ALS +++N + L EW+
Sbjct: 893 EIGAEVWEHLLVMIR---------CPFLALSATISNPEHLTEWL 927
Score = 90 (36.7 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH-LATGRKML 796
L+A R G+GY H L+ D+++V LF G I+V + ++ + + + + +
Sbjct: 1249 LKALARRGIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVFAQNSI 1308
Query: 797 ILTTL--LQMMGHAGR 810
L L QM G AGR
Sbjct: 1309 YLDALNYRQMSGRAGR 1324
Score = 39 (18.8 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 445 LSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG--KTIC 483
L+ + +F L K + A I L+ Q P GS + +C
Sbjct: 223 LALESLFGNLKWKNMMEEACETISLLKQFWPEGSDIRRVLC 263
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 134 (52.2 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 47/164 (28%), Positives = 80/164 (48%)
Query: 473 LAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL---- 528
+APT SGKT A + + + S GV+ VY+AP +AL Q +F K L
Sbjct: 783 VAPTSSGKTY-ASYYCMEKVLKESNEGVV--VYVAPTKALVNQVAATVHNRFTKSLPNGE 839
Query: 529 GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 588
+C V T + D Q++I+ P ++ L ++ +V+++ I DE+H +GG
Sbjct: 840 ALCGV-FTRDYRHDAL---NCQVLITVPACFEILLLSPHRQAWVKRIRYVIFDEVHCLGG 895
Query: 589 Q-GGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI 631
+ G V E ++ +R +ALS +++N + L EW+
Sbjct: 896 EIGAEVWEHLLVMIR---------CPFLALSATISNPEHLTEWL 930
Score = 90 (36.7 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH-LATGRKML 796
L+A R G+GY H L+ D+++V LF G I+V + ++ + + + + +
Sbjct: 1252 LKALARRGIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVFAQNSI 1311
Query: 797 ILTTL--LQMMGHAGR 810
L L QM G AGR
Sbjct: 1312 YLDALNYRQMSGRAGR 1327
Score = 39 (18.8 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 445 LSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG--KTIC 483
L+ + +F L K + A I L+ Q P GS + +C
Sbjct: 223 LALESLFGNLKWKNMMEEACETISLLKQFWPEGSDIRRVLC 263
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 154 (59.3 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 95/394 (24%), Positives = 170/394 (43%)
Query: 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAV-YIAPIE--ALAKQRYC---D 519
N+I L PT GKT+ AE +LR E V+ + Y++ ++ A + D
Sbjct: 282 NLIYAL---PTSGGKTLVAEILMLRE-LLCRERNVLFILPYVSIVQEKVSAMSPFAIDLD 337
Query: 520 W---ERKFGKELGMCVVE-LTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQV 575
+ E GK G C + ++ + +EKG +++ D+L QR + ++
Sbjct: 338 FIVEEYTAGK--GKCPPQPRRKRRSLFIASIEKGAVLM------DSLID--VQRPH--EI 385
Query: 576 SLFIIDELHLIGGQG-GPVLEVIVARMRYIASQVE---NKIRIVALS--TSLANAK---- 625
L ++DELHLIG +G G LE + ++ ++ + ++ I LS +S NA
Sbjct: 386 GLVVVDELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLNADVYTR 445
Query: 626 -----DLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTA-IMQ 679
+L E+I + G + + + V+ EA +A P + A ++
Sbjct: 446 GFRPVELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKRA--DPDHLAGLIS 503
Query: 680 HAKNEKPALVFVPSRKYARLTAVDL--MIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEM 737
E LVF PSRK A+ L ++ K + + + L ++ I+ +
Sbjct: 504 ECAPEHCCLVFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMDALDKMCGILSP-V 562
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA------T 791
L TL G+ Y H GL +++ + T + G + V +S++ V L A
Sbjct: 563 LAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRAPYV 622
Query: 792 GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHA 825
G++ L L QM+G AGR L + + +++ +
Sbjct: 623 GQEFLTLCKYKQMVGRAGRAGLGEAGESILIAQS 656
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 141 (54.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 47/176 (26%), Positives = 86/176 (48%)
Query: 457 KQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQR 516
++ + A+ N + +APT SGKT A + + + S+ GV+ VY+AP +AL Q
Sbjct: 747 QRELLDAVDNNESAVIVAPTSSGKTY-ASYYCMEKVLKMSDEGVV--VYVAPTKALVNQV 803
Query: 517 YCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 576
+F K+L +V V T + QI+++ P+ + L + + + +++
Sbjct: 804 VGSVYSRFTKKLPDGLVVCGVFTRDYRHDVMNSQILVTVPQCLEILMLSPRCQSWTKRIQ 863
Query: 577 LFIIDELHLIGGQ-GGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI 631
I DE+H +GG+ G V E ++ +R +ALS +++N L EW+
Sbjct: 864 YIIFDEIHCLGGEIGAEVWEHLLVTIR---------CPFLALSATISNPDHLTEWL 910
Score = 67 (28.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 743 RLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
R G+GY H + +++ V LF G IKV +S++
Sbjct: 1247 RRGIGYHHGAMAMKERQTVEMLFRLGYIKVVTATSTL 1283
Score = 43 (20.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 978 EEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQ 1026
+E L + + H ++A+PK D V N H + R + L+ +
Sbjct: 1191 QERLKKLTVIHSMCTYADPKAVDEDV--NVWRNFHSTLRKIFYRLRFQR 1237
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 140 (54.3 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 45/160 (28%), Positives = 79/160 (49%)
Query: 473 LAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
+APT SGKT A + + + S+ GV+ VY+AP +AL Q + +F K L
Sbjct: 784 VAPTSSGKTY-ASYYCMEKVLKESDDGVV--VYVAPTKALVNQVAATVQNRFTKNLPSGE 840
Query: 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GG 591
V V T Q++I+ P ++ L ++ +V+++ I DE+H +GG+ G
Sbjct: 841 VLCGVFTREYRHDALNCQVLITVPACFEILLLAPHRQNWVKKIRYVIFDEVHCLGGEIGA 900
Query: 592 PVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI 631
+ E ++ +R +ALS +++N + L EW+
Sbjct: 901 EIWEHLLVMIR---------CPFLALSATISNPEHLTEWL 931
Score = 82 (33.9 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 27/106 (25%), Positives = 51/106 (48%)
Query: 709 CKDSDQKSAFLLCSAKEVEPHVSIIQE-EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEA 767
C +DQK+ + ++V V ++ E L+A G+GY H ++ ++++V LF
Sbjct: 1224 CTYADQKAVDTE-TLQKVFGRVKFERKGEELKALAERGIGYHHSAMSFKEKQLVEILFRK 1282
Query: 768 GKIKVCVMSSSMCWEVPLTAH-LATGRKMLILTTL--LQMMGHAGR 810
G ++V + ++ V + + + + L L QM G AGR
Sbjct: 1283 GYLRVVTATGTLALGVNMPCKSVVFAQNSVYLDALNYRQMSGRAGR 1328
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 354 EYFLLKKQYTEEDHSLN 370
EYF+L+ +T E +LN
Sbjct: 352 EYFILRNIHTFEFWNLN 368
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 108 (43.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 38/148 (25%), Positives = 77/148 (52%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V+ A T +GKT+ A +AI + E R +Y +PI+AL+ Q+Y D++ +F ++G
Sbjct: 85 VMVSAHTSAGKTVVASYAIAMS---LKEN--QRVIYTSPIKALSNQKYRDFKEEFS-DVG 138
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI-GG 588
+ ++T++ ++ T E S ++K + +++V+ I DE+H +
Sbjct: 139 LMTGDVTIDP--------NASCLVMTTEI--LRSMQYKGSEIMREVAWIIFDEVHYMRDS 188
Query: 589 QGGPVLE--VIVA----RMRYIASQVEN 610
+ G V E +++A R ++++ V N
Sbjct: 189 ERGVVWEESIVMAPKNSRFVFLSATVPN 216
Score = 97 (39.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 60/266 (22%), Positives = 117/266 (43%)
Query: 686 PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF--LLCSAKEV--EPHVSIIQEEMLRAT 741
P ++F S+K A+ + D+K A + SA ++ + + Q +
Sbjct: 322 PVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPI 381
Query: 742 LRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS---SMCWEVPLTAHLAT------G 792
L+ G+G H GL +EV+ LF+ G IK C+ ++ S+ +P + T G
Sbjct: 382 LKRGIGVHHSGLLPILKEVIEILFQEGLIK-CLFATETFSIGLNMPAKTVVFTNVRKFDG 440
Query: 793 RKMLILTT--LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLH 850
K L++ +QM G AGR +D C+++ + K + + +S L+ H
Sbjct: 441 DKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKG-SADS-LNSAFH 498
Query: 851 DNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDL 910
++N ++ + ++ + L +N +++ Q + R + D +E I L
Sbjct: 499 LSYN--MLLNQLRCEEGDPE------NLLRN-SFFQFQ--ADRAIPD-----LEKQIKSL 542
Query: 911 EATR-SIIMEDDMDLCPSNYGMIASY 935
E R S+++E++ L + Y +I Y
Sbjct: 543 EEERDSLVIEEEESL-KNYYNLILQY 567
>TAIR|locus:2127373 [details] [associations]
symbol:ATERDJ2B species:3702 "Arabidopsis thaliana"
[GO:0006457 "protein folding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0051082 "unfolded protein binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0030176 "integral
to endoplasmic reticulum membrane" evidence=IDA] InterPro:IPR027137
InterPro:IPR001623 Pfam:PF00226 GO:GO:0005886 GO:GO:0006457
EMBL:CP002687 GO:GO:0030176 Gene3D:1.10.287.110 PRINTS:PR00625
SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 UniGene:At.23696
UniGene:At.71130 KO:K09540 PANTHER:PTHR24075 OMA:ARFIPPG
IPI:IPI00518885 RefSeq:NP_567621.1 ProteinModelPortal:F4JIN3
SMR:F4JIN3 PRIDE:F4JIN3 EnsemblPlants:AT4G21180.1 GeneID:827866
KEGG:ath:AT4G21180 Uniprot:F4JIN3
Length = 661
Score = 129 (50.5 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 60/232 (25%), Positives = 104/232 (44%)
Query: 1003 VKANALLQAHFSARH--MEGNLKLDQEKVLLSASRLLQAMVD--VISSN----GWLSLAL 1054
+K L+Q + + L+ D VL A RLL+ ++ VI N GWL AL
Sbjct: 301 IKTELLIQKQLTRESSVLSPTLQRDFRHVLEFAPRLLEDLIKMAVIPRNEQGRGWLRPAL 360
Query: 1055 LAMEVSQMVTQGM--------WEHDSMLLQLPHFTKDLAKRC--QENPGRSIETVFXXXX 1104
ME+SQ + Q + E + LQLPHF + +AK Q + + +
Sbjct: 361 GVMELSQCIVQAVPLSARKSSSEDIAPFLQLPHFNESIAKSIALQVKSFQKFQELSLAER 420
Query: 1105 XXXXXXXXXXQMSDVQLLDIARFCNRFPN--IDMSYKVQDSENVRAGGEDTTLQ--VVLE 1160
+DVQ DI + P+ I+++ K + E ++ G + T+Q + L+
Sbjct: 421 SKLLREVVSLSETDVQ--DIEKVLEMIPSLKINVTCKTEGEEGIQEG-DIMTVQAWITLK 477
Query: 1161 RDLGGRTELGPV-YSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRA 1211
R G +G + +S +P KEE +W+++ D+ N + ++V ++ A
Sbjct: 478 RPNG---LIGAIPHSPYFPFHKEENFWVLLADS--NHVWFFQKVKFMDEAGA 524
Score = 75 (31.5 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 1193 KTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMC--DSYMGCDQEYSFTVDV 1248
+TN A+K + KS ++L + G+ TY L C D+++GCDQ+ S V+V
Sbjct: 545 ETND--AVKEAVEKVKSGSRLVMGRLLAPGEGTYNLTCFCLSDTWIGCDQKTSLKVEV 600
Score = 39 (18.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 161 ERITDLIHTAANVLDRNNLVKYGRKSG 187
E I + L R N KYG G
Sbjct: 142 ESIAKAYQALTDPLSRENFEKYGHPDG 168
Score = 39 (18.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 137 LYTRMLRNPVLY-GLSP-EVLDITLGERITDLIHTAANVLDRNNLVKY--GRKSGY-FQS 191
L TR +L L+P +V+DI + R + + D +L K KS
Sbjct: 226 LQTRQAYFELLQPSLTPSKVMDIFI--RAAEYAEISVRKSDDESLQKLFMSVKSELNLDP 283
Query: 192 EKIKMELAKLLDRVPIPVKESL 213
+K+K E AK + P +K L
Sbjct: 284 KKLKQEEAKFWKKHPATIKTEL 305
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 104 (41.7 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 33/139 (23%), Positives = 71/139 (51%)
Query: 446 SRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVY 505
+++ F P +++ + N VL A T +GKT+ AE+AI + S R +Y
Sbjct: 145 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAK-----SLAAKQRVIY 199
Query: 506 IAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRR 565
PI+AL+ Q++ ++ +F K++G+ ++T+ + +I++T + L
Sbjct: 200 TTPIKALSNQKFREFTDEF-KDVGLVTGDVTINPSASC-------LIMTTEILRNML--- 248
Query: 566 WKQRKYVQQVSLFIIDELH 584
++ + +++V + DE+H
Sbjct: 249 YRGSEIMREVGWVVFDEIH 267
Score = 89 (36.4 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 43/155 (27%), Positives = 69/155 (44%)
Query: 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF--LLCSAKEV--EPHVSIIQEEM 737
+N P ++F S+K + A+ + D+K + +A +V E + Q E
Sbjct: 400 RNFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVEN 459
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS--MCWEVPLTAHLAT---- 791
+ LR G+G H GL +E + LF G IK + + M +P L T
Sbjct: 460 VLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRK 519
Query: 792 --GRKMLILTT--LLQMMGHAGRPLLDNSEKCVIL 822
G+K +++ +QM G AGR LD+ + VIL
Sbjct: 520 FDGKKFRWISSGEYIQMAGRAGRRGLDD-KGIVIL 553
Score = 57 (25.1 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 21/91 (23%), Positives = 41/91 (45%)
Query: 566 WKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624
++ + +++V + DE+H + + G V E + + + +R V LS ++ NA
Sbjct: 249 YRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILL-------PDNVRYVFLSATIPNA 301
Query: 625 KDLGEWI----GASSHGVFNFPPGVRPVPLE 651
+ EW+ H V+ RP PL+
Sbjct: 302 RQFAEWVCHLHKQPCHVVYT---DYRPTPLQ 329
Score = 45 (20.9 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 877 RLTQNPNYYN--LQGVSHRHLSDH--LSELVENTISDLEATRSIIMEDDM 922
RL ++P + + L+ + HR D L + +++ ++L+A RS++ D++
Sbjct: 816 RLEEHPLHKSPELERI-HRRYQDKVTLQKQLQDLKAELKAARSLLQMDEL 864
>UNIPROTKB|J9P962 [details] [associations]
symbol:SEC63 "Translocation protein SEC63 homolog"
species:9615 "Canis lupus familiaris" [GO:0031204
"posttranslational protein targeting to membrane, translocation"
evidence=IEA] [GO:0008565 "protein transporter activity"
evidence=IEA] InterPro:IPR027137 PANTHER:PTHR24075
GeneTree:ENSGT00390000001965 EMBL:AAEX03008592
Ensembl:ENSCAFT00000044784 OMA:TSPPIFR Uniprot:J9P962
Length = 280
Score = 140 (54.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+++ +L+ +L F AP + G YT+
Sbjct: 157 PVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTV 216
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
DSYMG DQ ++V EA
Sbjct: 217 FLRSDSYMGLDQIKPLKLEVHEA 239
>UNIPROTKB|I3L8F4 [details] [associations]
symbol:I3L8F4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000025178 OMA:CCILEIY Uniprot:I3L8F4
Length = 115
Score = 90 (36.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRA-----VYIAPIEALAKQRYCDWERKF 524
+L APTG+GKT A +L ++ + GV++ VY+AP++ALA + + ++
Sbjct: 22 MLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL 81
Query: 525 GKELGMCVVELTVETAMDLKLLEKGQI 551
+ LG+ V ELT + + + + Q+
Sbjct: 82 -EPLGIVVKELTGDMQLSKNEILRTQV 107
Score = 57 (25.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 423 NPIQTQVFAVLYNTEDNVLVAA 444
N IQ+ VF YNT +N+L+ A
Sbjct: 5 NRIQSIVFETAYNTNENMLICA 26
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 134 (52.2 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 54/189 (28%), Positives = 89/189 (47%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE-L 528
V+ APT SGKT+ AE A + + R Y P++AL+ Q++ ++ FG + +
Sbjct: 172 VVVSAPTSSGKTLIAEAAAVSTVAKGR-----RLFYTTPLKALSNQKFREFRETFGDDNV 226
Query: 529 GMCVVELTVETAMDLKLLEKGQIIISTPE-----KWDALSRRWKQRKYVQQVSLFIIDEL 583
G+ LT ++A++ + QI+I T E + ++ + V ++DE+
Sbjct: 227 GL----LTGDSAIN----KDAQIVIMTTEILRNMLYQSVGMA-SSGTGLFHVDAIVLDEV 277
Query: 584 HLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFP 642
H + G V E IV Y +V+ ++ LS ++AN +L WIG HG
Sbjct: 278 HYLSDISRGTVWEEIVI---YCPKEVQ----LICLSATVANPDELAGWIG-EIHGKTELV 329
Query: 643 PGVR-PVPL 650
R PVPL
Sbjct: 330 TSTRRPVPL 338
Score = 75 (31.5 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 35/151 (23%), Positives = 61/151 (40%)
Query: 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRAT 741
KN PA+ F+ +R+ + + D +KS L K + ++E +
Sbjct: 435 KNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGL 494
Query: 742 LRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT--------GR 793
LR G+ H G + + LF+ G +KV + ++ + + A A G
Sbjct: 495 LR-GIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGN 553
Query: 794 KMLIL--TTLLQMMGHAGRPLLDNSEKCVIL 822
+ + L L QM G AGR +D V++
Sbjct: 554 ERIELGPNELYQMAGRAGRRGIDEKGYTVLV 584
Score = 42 (19.8 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1021 NLKLDQEKVLLSASRLLQAMVDVISSNGW 1049
NL +++ K L + SR L ++ I +GW
Sbjct: 950 NLTVEKMKRLKARSRRLINRLEQIEPSGW 978
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 130 (50.8 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 43/160 (26%), Positives = 78/160 (48%)
Query: 473 LAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
+APT SGKT A + + + S GV+ VY+AP +AL Q + ++ K +
Sbjct: 376 VAPTSSGKTY-ASYYCMEKVLKESNEGVV--VYVAPTKALVNQVAATVQNRYTKNMPAGE 432
Query: 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GG 591
V V T+ Q++I+ P ++ L ++ +V+++ I DE+H IGG+
Sbjct: 433 VLCGVFTSDYHHEALNSQVLITMPACFEILLLAPHRQNWVKRIRYVIFDEVHCIGGEIRA 492
Query: 592 PVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI 631
+ E ++ +R +ALS +++N + L EW+
Sbjct: 493 EIWEHLLVMIR---------CPFLALSATISNPQHLTEWL 523
Score = 78 (32.5 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 736 EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH-LATGRK 794
+ L+ R G+GY H + ++++V LF G I+V + ++ + + + +
Sbjct: 843 DTLKKLARRGIGYHHSSMTNKEKQLVEILFRKGFIRVVTATRTLSLGINMPCKSVVFAQN 902
Query: 795 MLILTTL--LQMMGHAGR 810
+ L L QM G AGR
Sbjct: 903 SVYLDALNYRQMSGRAGR 920
Score = 44 (20.5 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 985 LINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQE 1027
++ H SF P+ TD +K L F + EG++ DQE
Sbjct: 984 VLKHSLLSFKQPRATDM-LKLYFLYSLQFLVK--EGHI--DQE 1021
>FB|FBgn0035771 [details] [associations]
symbol:sec63 "sec63" species:7227 "Drosophila melanogaster"
[GO:0005047 "signal recognition particle binding" evidence=ISS]
[GO:0005785 "signal recognition particle receptor complex"
evidence=ISS] [GO:0008565 "protein transporter activity"
evidence=IEA] [GO:0031204 "posttranslational protein targeting to
membrane, translocation" evidence=IEA] [GO:0045169 "fusome"
evidence=IDA] InterPro:IPR027137 InterPro:IPR001623
InterPro:IPR018253 Pfam:PF00226 GO:GO:0006457 EMBL:AE014296
Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271 SUPFAM:SSF46565
PROSITE:PS00636 PROSITE:PS50076 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 GO:GO:0045169 HSSP:P08622 CTD:11231
eggNOG:COG5407 KO:K09540 OMA:TIENCMK PANTHER:PTHR24075
GeneTree:ENSGT00390000001965 EMBL:BT001562 RefSeq:NP_648111.1
UniGene:Dm.14937 SMR:Q9VS57 MINT:MINT-762793 STRING:Q9VS57
EnsemblMetazoa:FBtr0076847 GeneID:38819 KEGG:dme:Dmel_CG8583
UCSC:CG8583-RA FlyBase:FBgn0035771 InParanoid:Q9VS57
OrthoDB:EOG48W9H1 GenomeRNAi:38819 NextBio:810541 Uniprot:Q9VS57
Length = 753
Score = 145 (56.1 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 69/264 (26%), Positives = 109/264 (41%)
Query: 981 LVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGN-LKLDQEKVLLSASRLLQA 1039
L+R+L N +P C +KA A+L AH S + L+ D++ V+ L+Q
Sbjct: 279 LIRQLPNLNEKCKEHPLCRMYSIKARAILHAHLSRMPLNPETLERDRQFVVKKCPYLVQE 338
Query: 1040 MVDVISSNGWLSLALLA------------MEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087
MV + ++ A M++S M+ QG+WE S LLQLPH T+D
Sbjct: 339 MVSCVHQLVMMAYARRVPRLPSIETIENCMKMSPMIIQGLWEFKSPLLQLPHLTEDHLYF 398
Query: 1088 CQENPGRSIETVFXXXXXXXXXXXXXXQ-MSDVQLLDIARFCNRFPNIDMSYKVQ--DSE 1144
N R ++ + + +SD + + + + P ID S + + D E
Sbjct: 399 M--NKKRHVKNLQQFAQLKPEESRQLLKNLSDFEYENTMKVLGKMPLIDFSIRCEVIDDE 456
Query: 1145 N--VRAGGEDTTLQVVLER-DLGGRTELGPVYSNRYPKAKEE-GWWLVVDDAKTNQLLAI 1200
N V G T+ V LER D+ +T G + K+E D+ + +
Sbjct: 457 NTNVVTAGAIVTVTVTLERKDM--KTLFGDTKAPEKQGIKDETNEEAAGDEDEAAAAAPV 514
Query: 1201 KRVSLQRKSRAKLDFAAPVEGGKK 1224
K+ S K R +GGKK
Sbjct: 515 KKASAWAKPRK----GGKGKGGKK 534
Score = 132 (51.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 1160 ERDLGGRTELG-PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFA 1216
ER L G++ L V+ +P+ K+E WW + D K+ LL +L K +L F
Sbjct: 620 ER-LEGKSRLSHTVHCPYFPEEKQEYWWTYICDRKSRTLLTAPYHVTNLVEKEEIQLKFT 678
Query: 1217 APVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEA 1251
AP G T+T+ DSY+G DQ+ +DV++A
Sbjct: 679 APRWPGVYTFTVCLRSDSYLGMDQQQELKLDVQKA 713
Score = 59 (25.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 265 EKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
E +K+S M+ + +W ++PL Q + + L + KK
Sbjct: 365 ENCMKMSPMIIQGLWEFKSPLLQLPHLTEDHLYFMNKK 402
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 107 (42.7 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 57/225 (25%), Positives = 98/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 287 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 340
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-G 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 341 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDA 390
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + S + + + +L A +G ++ RPV
Sbjct: 391 ERGVVWEEVLIMLPEHVSII---LLSATVPNALEFADWIGR---LKRRQIYVISTVARPV 444
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 445 PLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 487
Score = 94 (38.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 45/174 (25%), Positives = 73/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y A++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 507 AQDRGVYLALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 564
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + LR G+G H G+ +E+V LF G +KV + +
Sbjct: 565 RCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 624
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 625 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 678
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 107 (42.7 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 57/225 (25%), Positives = 98/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 322 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 375
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-G 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 376 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDA 425
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + S + + + +L A +G ++ RPV
Sbjct: 426 ERGVVWEEVLIMLPEHVSII---LLSATVPNALEFADWIGR---LKRRQIYVISTVARPV 479
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 480 PLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 522
Score = 94 (38.1 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 45/174 (25%), Positives = 73/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y A++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 542 AQDRGVYLALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 599
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + LR G+G H G+ +E+V LF G +KV + +
Sbjct: 600 RCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 659
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 660 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 713
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 111 (44.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 44/179 (24%), Positives = 90/179 (50%)
Query: 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAI---LRNHQRASETGVMRAVYIAPIEA 511
P +Q +++ VL A T +GKT+ AE+AI L+N+QR +Y +PI+A
Sbjct: 155 PFQQVAVSSIQRGESVLVSAHTSAGKTVVAEYAIAQSLKNNQRV--------IYTSPIKA 206
Query: 512 LAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKY 571
L+ Q+Y ++ +FG ++G+ ++T+ ++ T E ++ R +
Sbjct: 207 LSNQKYREFAAEFG-DVGLMTGDVTINPT--------ATCLVMTTEILRSMLYRGSE--I 255
Query: 572 VQQVSLFIIDELHLI-GGQGGPVLE--VIVA--RMRYI--ASQVENKIRIVALSTSLAN 623
+++V+ + DE+H + G V E +I+ ++RY+ ++ + N ++ T + N
Sbjct: 256 MREVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHN 314
Score = 88 (36.0 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 40/148 (27%), Positives = 66/148 (44%)
Query: 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF--LLCSAKEV--EPHVSIIQEEM 737
K+ P +VF S++ A+ + + D +K + SA E+ E ++ Q +
Sbjct: 408 KSLNPVIVFSFSKRECEFYALKMKSLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQN 467
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS--SMCWEVPLTAHLATG-RK 794
+ LR G+G H GL +E + LF+ G IKV + S+ +P + T RK
Sbjct: 468 ILPLLRRGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRK 527
Query: 795 M-------LILTTLLQMMGHAGRPLLDN 815
+ + +QM G AGR LD+
Sbjct: 528 FDGFSQRWVTPSEFVQMSGRAGRRGLDD 555
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 165 (63.1 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 81/358 (22%), Positives = 166/358 (46%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE-LGMCV 532
APT +GK+I AE L + + AS TG + +++ P ++A+++ +R + ++ + +C
Sbjct: 51 APTSAGKSIVAE---LLSWKVAS-TG-RKVLFVLPYISVAREKLHQIQRCWRRDDISVCG 105
Query: 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI-GGQGG 591
+ + + + L G + T EK +L+ R + +++ + ++DE+H++ G
Sbjct: 106 F-IGPQASNPNEWL--GAVC--TIEKAASLTNRALSEDWFEEIGMIVVDEMHMVFDSSRG 160
Query: 592 PVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLE 651
+E +++++ K+RI+ +S ++ +G+W+ G F RP+ L+
Sbjct: 161 AHIEHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWLD----GAKVFEARFRPIVLQ 216
Query: 652 IQIQ-GVDI--TNFEARMKAMTKPTYTAIMQHA-KNEKPALVFVPSRKYARLTAVDLMIY 707
I G ++ + ++ ++ + + + + LV + S+ A TA+++
Sbjct: 217 NHIVIGSELRKSGDNKVLREFSEDPLILLTEESFRRNSQTLVMISSKLDAEKTALNIAS- 275
Query: 708 SCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLR---------ATLRLGVGYLHEGLNKSDQ 758
+ ++ + LL KE + I+ + R +TL GV Y H GL ++
Sbjct: 276 RFHEINKTDSSLLEILKERANGLLFIKHGLERNGCKDRNVMSTLAWGVAYHHAGLTMEER 335
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL----ATGRKMLILTTL--LQMMGHAGR 810
E + F I + V +S++ V L A A R LT+L QM+G AGR
Sbjct: 336 ECIELGFREKNIVILVATSTLASGVNLPAERVLIKAQPRGPSALTSLNYRQMVGRAGR 393
Score = 37 (18.1 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 1130 RFPNIDMSYKVQDSENV 1146
+F N++ +K + SEN+
Sbjct: 566 KFKNLEPKFKKKISENI 582
>TAIR|locus:2016354 [details] [associations]
symbol:ATERDJ2A species:3702 "Arabidopsis thaliana"
[GO:0006457 "protein folding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0051082 "unfolded protein binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0030176 "integral to endoplasmic reticulum
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0030968
"endoplasmic reticulum unfolded protein response" evidence=RCA]
InterPro:IPR027137 InterPro:IPR001623 Pfam:PF00226 EMBL:CP002684
GO:GO:0005739 GO:GO:0005886 GO:GO:0005794 GO:GO:0006457
GO:GO:0030176 Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271
SUPFAM:SSF46565 PROSITE:PS50076 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 KO:K09540 PANTHER:PTHR24075
EMBL:AK227714 IPI:IPI00846610 RefSeq:NP_001031306.2
RefSeq:NP_001117623.1 RefSeq:NP_178112.2 UniGene:At.34014
ProteinModelPortal:Q0WT48 SMR:Q0WT48 PRIDE:Q0WT48
EnsemblPlants:AT1G79940.1 EnsemblPlants:AT1G79940.2
EnsemblPlants:AT1G79940.3 GeneID:844334 KEGG:ath:AT1G79940
TAIR:At1g79940 HOGENOM:HOG000240711 InParanoid:Q0WT48 OMA:GVCILLP
PhylomeDB:Q0WT48 ProtClustDB:CLSN2689532 Genevestigator:Q0WT48
Uniprot:Q0WT48
Length = 687
Score = 106 (42.4 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 44/174 (25%), Positives = 80/174 (45%)
Query: 1047 NGWLSLALLAMEVSQMVTQGM-----------WEHDSMLLQLPHFTKDLAKRCQENPGRS 1095
+GWL A+ +E+SQ + Q + E S LQLPHF+ + K+ +S
Sbjct: 353 HGWLRPAVGVVELSQCIVQAVPLSARKSSGVSSEGISPFLQLPHFSDAVVKKIARKKVKS 412
Query: 1096 IETVFXXXXXXXXXXXXXXQ-MSDVQLLDIARFCNRFPNI--DMSYKVQDSENVRAGGED 1152
+ + +S + DI + P+I D++ + + E ++ G +
Sbjct: 413 FQDLQEMRLEDRSELLTQVAGLSATDVEDIEKVLEMMPSITVDITCETEGEEGIQEG-DI 471
Query: 1153 TTLQ--VVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVS 1204
TLQ V L+R G L P ++ +P KEE +W+++ D+ +N + ++VS
Sbjct: 472 VTLQAWVTLKRPNGLVGAL-P-HAPYFPFHKEENYWVLLADSVSNNVWFSQKVS 523
Score = 71 (30.1 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 937 YISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQR----FS 992
Y+ ++T+ + + ++EV A+EY ++P+R ++E +++L R
Sbjct: 223 YVMHQTLSAYYYLMKPSLAPSKVMEVFTKAAEYMEIPVRRTDDEPLQKLFMSVRSELNLD 282
Query: 993 FANPKCTDP-----H---VKANALLQAHFSARH--MEGNLKLDQEKVLLSASRLLQAMV 1041
N K H VK L+QA + + L+ D +VL A RLL+ ++
Sbjct: 283 LKNMKQEQAKFWKQHPAIVKTELLIQAQLTRESGVLSPALQGDFRRVLELAPRLLEELL 341
Score = 63 (27.2 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 1193 KTNQLL--AIKRVSL-QRKSRAKLDFAAPVEGGKKTYTLD-F-MCDSYMGCDQEYSFTVD 1247
+TN + AI++V R KL AP EG TY L F +CD+++GCD++ + V
Sbjct: 551 ETNDAVREAIEKVKGGSRLVMGKLQ--APAEG---TYNLTCFCLCDTWIGCDKKQALKVK 605
Query: 1248 V 1248
V
Sbjct: 606 V 606
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 131 (51.2 bits), Expect = 0.00033, P = 0.00033
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + + + + +L P + +QM
Sbjct: 644 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLPGEYVQMA 701
Query: 66 GRAGRPQYDSYGEGIIIT-GH-SEL-QYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D G I++ G E+ + +M + ++SQF +LN
Sbjct: 702 GRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 753
Score = 108 (43.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 57/225 (25%), Positives = 97/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 328 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 381
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-G 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 382 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDA 431
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + V + + +L A +G ++ RPV
Sbjct: 432 ERGVVWEEVLIML---PDHVSIILLSATVPNALEFADWIGR---LKRRQIYVISTVARPV 485
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 486 PLEHYLFTGNSPKTQGELFLLLDSRGSFHTKGYYAAV--EAKKER 528
Score = 92 (37.4 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 44/174 (25%), Positives = 73/174 (41%)
Query: 668 AMTKPTYTAIMQ--HAKNEKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y +++ A+ + P +VF SR + + LT++DL S + + FL
Sbjct: 548 AQDRGVYLSLLASLRAREQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 605
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 606 RCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 665
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 666 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 719
>TIGR_CMR|SO_4364 [details] [associations]
symbol:SO_4364 "ATP-dependent DNA helicase RecG"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_719888.2
ProteinModelPortal:Q8E9C0 GeneID:1171966 KEGG:son:SO_4364
PATRIC:23528383 Uniprot:Q8E9C0
Length = 691
Score = 107 (42.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 58/212 (27%), Positives = 96/212 (45%)
Query: 449 LMFARLPAKQRITA------ALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMR 502
L F A+QR+ A A P+ ++ L GSGKT+ A A L+ A E G
Sbjct: 263 LPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQGDVGSGKTLVAALAALQ----AIENGYQV 318
Query: 503 AVYIAPIEALAKQR---YCDWERKFGKELGMCVVELTVET-AMDLKLLEKG--QIIISTP 556
A+ +AP E LA+Q + W G ++G +L + A L +E G QI+I T
Sbjct: 319 AM-MAPTELLAEQHAANFAAWFEPLGLKVGWLAGKLKGKARAQSLADIESGAAQIVIGT- 376
Query: 557 EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVA 616
A+ ++Q+ +++L IIDE H G V + + R + I +Q + +++
Sbjct: 377 ---HAI---FQQQVIFHKLALIIIDEQHRFG-----VHQRMGLREKGI-NQGFHPHQLIM 424
Query: 617 LSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+T + + + + + PPG PV
Sbjct: 425 TATPIPRTLAMTAYADLDTSIIDELPPGRTPV 456
Score = 85 (35.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 32/124 (25%), Positives = 62/124 (50%)
Query: 712 SDQKSAFLLCSAKEVEPHVSIIQ------EEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765
+D++ A+ +C+ E E V Q EE+ +A L +G +H + ++++ + F
Sbjct: 479 TDKRQAYWVCTLIE-ESEVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEKQKIMADF 537
Query: 766 EAGKIKVCVMSS--SMCWEVPLTA-HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVIL 822
+AG I + V ++ + +VP ++ + + L L L Q+ G GR + + CV+L
Sbjct: 538 KAGTINLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAV--ASHCVLL 595
Query: 823 CHAP 826
AP
Sbjct: 596 YKAP 599
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 102 (41.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 41/159 (25%), Positives = 77/159 (48%)
Query: 441 LVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGV 500
LV ++R+ F ++ L N V A T +GKT+ AE+AI + +
Sbjct: 311 LVPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIA-----LAAKHM 365
Query: 501 MRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWD 560
+A+Y +PI+AL+ Q++ D++ F ++G+ LT D+++ + +I T E
Sbjct: 366 TKAIYTSPIKALSNQKFRDFKNTFD-DVGI----LTG----DVQINPEASCLIMTTEI-- 414
Query: 561 ALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIV 598
S ++ ++ V I DE+H + + G V E ++
Sbjct: 415 LRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVI 453
Score = 96 (38.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 43/164 (26%), Positives = 66/164 (40%)
Query: 668 AMTKPTYTAIMQHAKNEK--PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725
A K + ++QH + E PA +FV S+K A L ++ +KS + K
Sbjct: 609 AQDKTVWVQVVQHLRKENLLPACIFVFSKKRCEQNADSLSNQDFCNASEKSLIHITIEKS 668
Query: 726 V----EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCW 781
+ + ++ Q LR L G+ H GL +E+V LF +KV + +
Sbjct: 669 LTRLKQEDRTLPQILRLRELLSRGIAVHHGGLLPIMKEIVEILFAKTLVKVLFATETFAM 728
Query: 782 EVPLTA----------HLATGRKMLILTTLLQMMGHAGRPLLDN 815
+ L H G + L+ QM G AGR LDN
Sbjct: 729 GLNLPTRTVVFSGFRKHDGKGFRDLLPGEYTQMAGRAGRRGLDN 772
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 136 (52.9 bits), Expect = 0.00010, P = 0.00010
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
++L+E LF G ++VL +T A G+NLP TVI + + + EL+P + QM
Sbjct: 704 KELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKH--DGNGLRELTPGEFTQMA 761
Query: 66 GRAGRPQYDSYGEGIIITGHSELQYY-LSLMNQQLP--IESQFVSKLAELLN 114
GRAGR DS G I++ +S L + +P ++SQF +LN
Sbjct: 762 GRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILN 813
Score = 121 (47.7 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 38/155 (24%), Positives = 71/155 (45%)
Query: 502 RAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDA 561
+ +Y +PI+AL+ Q++ D++ F V + + T D+++ +I T E
Sbjct: 374 KTIYTSPIKALSNQKFRDFKETFDD------VNIGLITG-DVQINPDANCLIMTTEI--L 424
Query: 562 LSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVARMRYIASQVENKIRIVALSTS 620
S ++ ++ V I DE+H + Q G V E ++ + ++ + LS +
Sbjct: 425 RSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML-------PQHVKFILLSAT 477
Query: 621 LANAKDLGEWIGASSH-GVFNFPPGVRPVPLEIQI 654
+ N + WIG + ++ RPVPLEI I
Sbjct: 478 VPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINI 512
Score = 113 (44.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 37/137 (27%), Positives = 68/137 (49%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI H+ ++T +Y +PI+AL+ Q++ D++ F
Sbjct: 347 VFVAAHTSAGKTVVAEYAIAMAHRNMTKT-----IYTSPIKALSNQKFRDFKETFDD--- 398
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 589
V + + T D+++ +I T E S ++ ++ V I DE+H + Q
Sbjct: 399 ---VNIGLITG-DVQINPDANCLIMTTEI--LRSMLYRGADLIRDVEFVIFDEVHYVNDQ 452
Query: 590 GGPVL--EVIVARMRYI 604
V+ EVI+ +++
Sbjct: 453 DRGVVWEEVIIMLPQHV 469
Score = 86 (35.3 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 43/171 (25%), Positives = 74/171 (43%)
Query: 670 TKPTYTAIMQHAKNEK--PALVFVPSRKYARLTAVDLM-IYSC--KDSDQKSAFLLCSAK 724
+K T+ I+ + + + P +VFV S+K A L I C K+ Q F+ S
Sbjct: 610 SKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSIT 669
Query: 725 EVEPHVSIIQEEM-LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS--MCW 781
++ + + + R+ L G+ H GL +E++ LF G IKV + + M
Sbjct: 670 RLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGL 729
Query: 782 EVP--------LTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCH 824
+P + H G + L QM G AGR LD++ +++ +
Sbjct: 730 NLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 780
Score = 38 (18.4 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 285 LRQFNGIPNEILMKLEKKD 303
L+Q N I NE+ +++E +
Sbjct: 223 LKQLNEIDNELDIRIEANE 241
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 134 (52.2 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 38/121 (31%), Positives = 61/121 (50%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R VE+LF G V+ + +T LA G+N+PA TV+++ +N E+ L+P + Q+
Sbjct: 352 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHM--PLTPGEYTQLT 409
Query: 66 GRAGRPQYDSYGEGIIITGHSELQ--YYLSLMNQQ-LPIESQFVSKLAELLNAEIVLGTV 122
GRAGR D G ++I H E++ L + + P+ S F +N +G
Sbjct: 410 GRAGRRGIDVEGHAVVIW-HPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQ 468
Query: 123 Q 123
Q
Sbjct: 469 Q 469
Score = 129 (50.5 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 42/155 (27%), Positives = 79/155 (50%)
Query: 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA 507
+L F+ +QR +AL VL APTG+GKT+ EFA+ H A G + Y
Sbjct: 13 ELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAV---HL-ALAAG-SKCFYTT 67
Query: 508 PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWK 567
P++AL+ Q++ D ++G++ ++ + T DL + +++ T E + +
Sbjct: 68 PLKALSNQKHTDLTARYGRD------QIGLLTG-DLSVNGNAPVVVMTTEV--LRNMLYA 118
Query: 568 QRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVARM 601
+Q +S ++DE+H + + GPV E ++ ++
Sbjct: 119 DSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQL 153
Score = 122 (48.0 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 36/150 (24%), Positives = 74/150 (49%)
Query: 502 RAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDA 561
+ Y P++AL+ Q++ D ++G++ ++ + T DL + +++ T E
Sbjct: 62 KCFYTTPLKALSNQKHTDLTARYGRD------QIGLLTG-DLSVNGNAPVVVMTTEV--L 112
Query: 562 LSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVARMRYIASQVENKIRIVALSTS 620
+ + +Q +S ++DE+H + + GPV E ++ Q+ + +R+V+LS +
Sbjct: 113 RNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVIL-------QLPDDVRVVSLSAT 165
Query: 621 LANAKDLGEWIGASSHGVFNFPPGVRPVPL 650
++NA++ G WI RPVPL
Sbjct: 166 VSNAEEFGGWIQTVRGDTTVVVDEHRPVPL 195
Score = 58 (25.5 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 23/96 (23%), Positives = 39/96 (40%)
Query: 739 RATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT------- 791
R L G+ H G+ + + V LF AG +K + ++ + + A
Sbjct: 333 REGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKF 392
Query: 792 -GRKMLILTT--LLQMMGHAGRPLLDNSEKCVILCH 824
G + + LT Q+ G AGR +D V++ H
Sbjct: 393 NGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWH 428
Score = 51 (23.0 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 841 VESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLS 900
VE H H VAG+ + T+ R + P+Y + HR
Sbjct: 419 VEGHAVVIWHPEIEPSEVAGLASTR-------TFPLRSSFAPSYNMTINLVHRMGPQQAH 471
Query: 901 ELVENTISDLEATRSII 917
L+E + + +A RS++
Sbjct: 472 RLLEQSFAQYQADRSVV 488
Score = 43 (20.2 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 586 IGGQGGPVLEVIVARMRYIASQVE 609
+GG P+LE AR+R S++E
Sbjct: 508 LGGSDAPILEY--ARLRARVSELE 529
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 131 (51.2 bits), Expect = 0.00027, P = 0.00027
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + + + + +L P + +QM
Sbjct: 451 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLPGEYVQMA 508
Query: 66 GRAGRPQYDSYGEGIIIT-GH-SEL-QYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D G I++ G E+ + +M + ++SQF +LN
Sbjct: 509 GRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 560
Score = 106 (42.4 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 57/225 (25%), Positives = 97/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 135 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 188
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG- 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 189 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDV 238
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + V + + +L A +G ++ RPV
Sbjct: 239 ERGVVWEEVLIML---PDHVSIILLSATVPNALEFADWIGR---LKRRQIYVISTVTRPV 292
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 293 PLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 335
Score = 86 (35.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y +++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 355 AQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 412
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 413 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 472
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 473 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 526
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 131 (51.2 bits), Expect = 0.00027, P = 0.00027
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + + + + +L P + +QM
Sbjct: 451 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLPGEYVQMA 508
Query: 66 GRAGRPQYDSYGEGIIIT-GH-SEL-QYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D G I++ G E+ + +M + ++SQF +LN
Sbjct: 509 GRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 560
Score = 106 (42.4 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 57/225 (25%), Positives = 97/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 135 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 188
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG- 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 189 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDV 238
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + V + + +L A +G ++ RPV
Sbjct: 239 ERGVVWEEVLIML---PDHVSIILLSATVPNALEFADWIGR---LKRRQIYVISTVTRPV 292
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 293 PLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 335
Score = 86 (35.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y +++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 355 AQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 412
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 413 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 472
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 473 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 526
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 131 (51.2 bits), Expect = 0.00028, P = 0.00028
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + + + + +L P + +QM
Sbjct: 486 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLPGEYVQMA 543
Query: 66 GRAGRPQYDSYGEGIIIT-GH-SEL-QYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D G I++ G E+ + +M + ++SQF +LN
Sbjct: 544 GRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 595
Score = 106 (42.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 57/225 (25%), Positives = 97/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 170 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 223
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG- 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 224 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDV 273
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + V + + +L A +G ++ RPV
Sbjct: 274 ERGVVWEEVLIML---PDHVSIILLSATVPNALEFADWIGR---LKRRQIYVISTVTRPV 327
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 328 PLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 370
Score = 86 (35.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y +++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 390 AQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 447
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 448 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 507
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 508 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 561
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 131 (51.2 bits), Expect = 0.00028, P = 0.00028
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + + + + +L P + +QM
Sbjct: 486 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLPGEYVQMA 543
Query: 66 GRAGRPQYDSYGEGIIIT-GH-SEL-QYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D G I++ G E+ + +M + ++SQF +LN
Sbjct: 544 GRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 595
Score = 106 (42.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 57/225 (25%), Positives = 97/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 170 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 223
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG- 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 224 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDV 273
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + V + + +L A +G ++ RPV
Sbjct: 274 ERGVVWEEVLIML---PDHVSIILLSATVPNALEFADWIGR---LKRRQIYVISTVTRPV 327
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 328 PLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 370
Score = 86 (35.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y +++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 390 AQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 447
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 448 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 507
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 508 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 561
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 107 (42.7 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 57/225 (25%), Positives = 97/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 328 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 381
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-G 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 382 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDA 431
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + V + + +L A +G ++ RPV
Sbjct: 432 ERGVVWEEVLIML---PDHVSIILLSATVPNALEFADWIGR---LKRRQIYVISTVARPV 485
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 486 PLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 528
Score = 86 (35.3 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y +++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 548 AQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 605
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 606 RCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 665
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 666 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 719
>UNIPROTKB|P96901 [details] [associations]
symbol:lhr "PROBABLE ATP-DEPENDENT HELICASE LHR (LARGE
HELICASE-RELATED PROTEIN)" species:83332 "Mycobacterium
tuberculosis H37Rv" [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR013701 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003676 EMBL:BX842582 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000238716 KO:K03724
OMA:PRLVWDR EMBL:CP003248 PIR:A70982 RefSeq:NP_217813.1
RefSeq:NP_337924.1 RefSeq:YP_006516773.1
EnsemblBacteria:EBMYCT00000002553 EnsemblBacteria:EBMYCT00000072323
GeneID:13318119 GeneID:887503 GeneID:926649 KEGG:mtc:MT3395
KEGG:mtu:Rv3296 KEGG:mtv:RVBD_3296 PATRIC:18129218
TubercuList:Rv3296 ProtClustDB:CLSK792412 Uniprot:P96901
Length = 1513
Score = 139 (54.0 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 76/329 (23%), Positives = 146/329 (44%)
Query: 471 LQLAPTGSGKTICAE-FAI--LRNHQRASET-GVMRAVYIAPIEALAK--QRYCDWE--- 521
L +APTGSGKT+ A +A+ L + SE R +Y++P++ALA +R
Sbjct: 45 LVIAPTGSGKTLAAFLWALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAG 104
Query: 522 -RKFGKELGMCVVELTV-----ET--AMDLKLLEKG-QIIISTPEKWDALSRRWKQRKYV 572
+ + G+ ++ V +T A+ +L+ + ++I+TPE L R+ +
Sbjct: 105 LTRLAERQGLPAPQIRVGVRSGDTPPALRRQLVSQPPDVLITTPESL-FLMLTSAARQTL 163
Query: 573 QQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI 631
V IIDE+H I + G L + + R+ ++S+ + + + LS ++ ++L ++
Sbjct: 164 TGVQTVIIDEIHAIAATKRGAHLALSLERLDDLSSR--RRAQRIGLSATVRPPEELARFL 221
Query: 632 GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFV 691
S PP + V L +Q+ D+ N + ++ ++ +VF
Sbjct: 222 SGQSPTTIVAPPAAKTVELSVQVPVPDMANLTDN--TIWPDVEARLVDLIESHNSTIVFA 279
Query: 692 PSRKYA-RLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLH 750
SR+ A RLTA I++ + + + P + + A L + H
Sbjct: 280 NSRRLAERLTARLNEIHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAH-H 338
Query: 751 EGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
++K + VV + G++K V +SS+
Sbjct: 339 GSISKEQRAVVEEDLKRGQLKAVVATSSL 367
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 131 (51.2 bits), Expect = 0.00033, P = 0.00033
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + + + + +L P + +QM
Sbjct: 644 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLPGEYVQMA 701
Query: 66 GRAGRPQYDSYGEGIIIT-GH-SEL-QYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D G I++ G E+ + +M + ++SQF +LN
Sbjct: 702 GRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 753
Score = 106 (42.4 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 57/225 (25%), Positives = 97/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 328 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 381
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG- 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 382 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDV 431
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + V + + +L A +G ++ RPV
Sbjct: 432 ERGVVWEEVLIML---PDHVSIILLSATVPNALEFADWIGR---LKRRQIYVISTVTRPV 485
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 486 PLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 528
Score = 86 (35.3 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y +++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 548 AQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 605
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 606 RCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 665
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 666 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 719
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 123 (48.4 bits), Expect = 7.3e-05, Sum P(3) = 7.3e-05
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 473 LAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
+APT SGKT A + + R S+ GV+ VY+AP ++L Q E +F K L
Sbjct: 764 VAPTSSGKTY-ASYYCMEKVLRESDVGVV--VYVAPAKSLVGQVAATVENRFTKTLPAGR 820
Query: 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GG 591
T + Q++I+ PE ++ L ++K+V+++ I DE+H +G + G
Sbjct: 821 TLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHRQKWVERIRYVIFDEVHYLGREVGA 880
Query: 592 PVLEVIVARMR 602
E+++ +R
Sbjct: 881 KFWELLLVIIR 891
Score = 76 (31.8 bits), Expect = 7.3e-05, Sum P(3) = 7.3e-05
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 724 KEVEPHVSIIQE-EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
+ V P V + + L+A + G+GY H + ++E V LF G I+V + ++
Sbjct: 1222 ERVLPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALG 1281
Query: 783 VPLTAH-LATGRKMLILTTL--LQMMGHAGR 810
+ + + + + L L QM G AGR
Sbjct: 1282 IHMPCKSVVFAQDSVYLDALNYRQMSGRAGR 1312
Score = 44 (20.5 bits), Expect = 7.3e-05, Sum P(3) = 7.3e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 1003 VKANALLQAHFSARHMEGNLKLDQEKVLLS 1032
V AN + + A+ NL Q KV+L+
Sbjct: 1470 VLANLFGRKYIPAKFQNANLSFSQSKVILA 1499
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 895 LSDHLSELVEN 905
+SD LSEL EN
Sbjct: 1663 ISDSLSELCEN 1673
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 106 (42.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 37/141 (26%), Positives = 77/141 (54%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
VL A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q+Y + +FG ++G
Sbjct: 167 VLVSAHTSAGKTVVAEYAIAQSLKNKQ-----RVIYTSPIKALSNQKYRELLAEFG-DVG 220
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDAL-SRRWKQRKYVQQVSLFIIDELHLIGG 588
+ ++T+ + G ++++T + L S ++ + +++V+ I DE+H +
Sbjct: 221 LMTGDITINP-------DAGCLVMTT----EILRSMLYRGSEVMREVAWVIFDEVHYMRD 269
Query: 589 QGGPVL--EVIVA---RMRYI 604
+ V+ E I+ ++RY+
Sbjct: 270 KERGVVWEETIILLPDKVRYV 290
Score = 81 (33.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 38/148 (25%), Positives = 65/148 (43%)
Query: 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF--LLCSAKEVEPHVS--IIQEEM 737
K P +VF S++ A+ + D+K A + +A + P + Q +
Sbjct: 404 KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKH 463
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS--SMCWEVPLTAHLAT---- 791
+ LR G+G H GL +EV+ LF+ G +KV + S+ +P + T
Sbjct: 464 ILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 523
Query: 792 --GRKMLILT--TLLQMMGHAGRPLLDN 815
G++ ++ +QM G AGR LD+
Sbjct: 524 WDGQQFRWVSGGEYIQMSGRAGRRGLDD 551
>UNIPROTKB|E3W982 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC096768 HGNC:HGNC:18536 IPI:IPI00965450
ProteinModelPortal:E3W982 SMR:E3W982 Ensembl:ENST00000508591
UCSC:uc003hon.1 ArrayExpress:E3W982 Bgee:E3W982 Uniprot:E3W982
Length = 489
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 43/141 (30%), Positives = 67/141 (47%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
L+ L PT GKT+ AE +L+ + +M I P A+ +++ FG EL
Sbjct: 355 LIYSL-PTSGGKTLVAEILMLQELLCCRKDVLM----ILPYVAIVQEKISGLS-SFGIEL 408
Query: 529 GMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
G V E K EK + I+T EK +L + + + L ++DELH+I
Sbjct: 409 GFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMI 468
Query: 587 G-GQGGPVLEVIVARMRYIAS 606
G G G LE+ +A++ Y +S
Sbjct: 469 GEGSRGATLEMTLAKILYTSS 489
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 131 (51.2 bits), Expect = 0.00022, P = 0.00022
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + + + + +L P + +QM
Sbjct: 278 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLPGEYVQMA 335
Query: 66 GRAGRPQYDSYGEGIIIT-GH-SEL-QYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D G I++ G E+ + +M + ++SQF +LN
Sbjct: 336 GRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 387
>UNIPROTKB|Q9KNM1 [details] [associations]
symbol:VC_2711 "ATP-dependent DNA helicase RecG"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003676 GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009378
KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
HSSP:Q9WY48 PIR:H82041 RefSeq:NP_232338.1 ProteinModelPortal:Q9KNM1
DNASU:2615539 GeneID:2615539 KEGG:vch:VC2711 PATRIC:20084440
Uniprot:Q9KNM1
Length = 692
Score = 96 (38.9 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 53/216 (24%), Positives = 95/216 (43%)
Query: 445 LSRKLMFARLPAKQRITA------ALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498
L +L F+ A+QR+ A A P+ ++ L GSGKT+ A A +R A E
Sbjct: 260 LLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDVGSGKTLVAALAAVR----AIEH 315
Query: 499 GVMRAVYIAPIEALAKQR---YCDWERKFGKELGMCVVELTVETA-MDLKLLEKGQI--I 552
G A+ +AP E LA+Q + W G ++G +L + +L + G++ +
Sbjct: 316 GYQVAL-MAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMV 374
Query: 553 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKI 612
+ T AL ++++ ++L IIDE H G V + + R + A Q
Sbjct: 375 VGT----HAL---FQEQVSFDHLALVIIDEQHRFG-----VHQRLELREKG-AKQGAYPH 421
Query: 613 RIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+++ +T + + + + + PPG P+
Sbjct: 422 QLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPI 457
Score = 84 (34.6 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 37/155 (23%), Positives = 74/155 (47%)
Query: 689 VFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSA---KEV-EPHVSI-IQEEMLRATLR 743
V +P K R V+ + ++C + + K A+ +C+ EV E + EE+ R
Sbjct: 460 VAIPDTK--RDEIVERIRHACLN-EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPE 516
Query: 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS--SMCWEVP-LTAHLATGRKMLILTT 800
+ +G +H + ++++ V F+ ++ + V ++ + +VP + + + L L
Sbjct: 517 VKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQ 576
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFL 835
L Q+ G GR + + CV+L HAP + +K L
Sbjct: 577 LHQLRGRVGRGTV--ASHCVLLFHAPLSKTAQKRL 609
Score = 46 (21.3 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 409 NPSYEALYQNYKLFNPIQT 427
N E ++ +YK F P QT
Sbjct: 122 NQGLEIIHPDYKFFTPAQT 140
>TIGR_CMR|VC_2711 [details] [associations]
symbol:VC_2711 "ATP-dependent DNA helicase RecG"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004365
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF01336 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009378 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 PIR:H82041 RefSeq:NP_232338.1
ProteinModelPortal:Q9KNM1 DNASU:2615539 GeneID:2615539
KEGG:vch:VC2711 PATRIC:20084440 Uniprot:Q9KNM1
Length = 692
Score = 96 (38.9 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 53/216 (24%), Positives = 95/216 (43%)
Query: 445 LSRKLMFARLPAKQRITA------ALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498
L +L F+ A+QR+ A A P+ ++ L GSGKT+ A A +R A E
Sbjct: 260 LLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDVGSGKTLVAALAAVR----AIEH 315
Query: 499 GVMRAVYIAPIEALAKQR---YCDWERKFGKELGMCVVELTVETA-MDLKLLEKGQI--I 552
G A+ +AP E LA+Q + W G ++G +L + +L + G++ +
Sbjct: 316 GYQVAL-MAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMV 374
Query: 553 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKI 612
+ T AL ++++ ++L IIDE H G V + + R + A Q
Sbjct: 375 VGT----HAL---FQEQVSFDHLALVIIDEQHRFG-----VHQRLELREKG-AKQGAYPH 421
Query: 613 RIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+++ +T + + + + + PPG P+
Sbjct: 422 QLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPI 457
Score = 84 (34.6 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 37/155 (23%), Positives = 74/155 (47%)
Query: 689 VFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSA---KEV-EPHVSI-IQEEMLRATLR 743
V +P K R V+ + ++C + + K A+ +C+ EV E + EE+ R
Sbjct: 460 VAIPDTK--RDEIVERIRHACLN-EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPE 516
Query: 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS--SMCWEVP-LTAHLATGRKMLILTT 800
+ +G +H + ++++ V F+ ++ + V ++ + +VP + + + L L
Sbjct: 517 VKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQ 576
Query: 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFL 835
L Q+ G GR + + CV+L HAP + +K L
Sbjct: 577 LHQLRGRVGRGTV--ASHCVLLFHAPLSKTAQKRL 609
Score = 46 (21.3 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 409 NPSYEALYQNYKLFNPIQT 427
N E ++ +YK F P QT
Sbjct: 122 NQGLEIIHPDYKFFTPAQT 140
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 105 (42.0 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 433 LYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNH 492
LYN + + A R F P + A + VL A T +GKT+ AE++I
Sbjct: 195 LYNPPEPIKPA---RTYPFKLDPFQATSIACIERNESVLVSAHTSAGKTVVAEYSIAT-- 249
Query: 493 QRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQII 552
A G R +Y +PI+AL+ Q++ D + F +++G+ ++T+ +
Sbjct: 250 --ALRDG-QRVIYTSPIKALSNQKFRDLQETF-QDVGLMTGDITINA--------NASCL 297
Query: 553 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 586
+ T E ++ R + +++VS I DE+H +
Sbjct: 298 VMTTEILRSMLYRGSET--MREVSWVIFDEIHYL 329
Score = 79 (32.9 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 37/163 (22%), Positives = 69/163 (42%)
Query: 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF------LLCSAKEVEPHVSIIQE 735
+N +P ++F S+K A+ + + D+K+A + S E + + +
Sbjct: 457 RNYQPVIIFSFSKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSESDKQLPAVIN 516
Query: 736 EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS--SMCWEVPLTAHLAT-- 791
+ L+ G+G H GL +E++ LF+ G IK + S+ +P + T
Sbjct: 517 --ILPLLKRGIGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTSV 574
Query: 792 ------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHK 828
G + + +QM G AGR LD E+ +++ K
Sbjct: 575 RKFDGEGMRWISGGEYIQMSGRAGRRGLD--ERGIVILMVDEK 615
Score = 48 (22.0 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 23/141 (16%), Positives = 51/141 (36%)
Query: 1022 LKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLA--MEVSQMVTQGMWEHDSMLLQLPH 1079
L +D++ A +++ D ++S+ W+ ++L + V + + + + Q
Sbjct: 610 LMVDEKMEPAIAKGMVKGQADRLTSSFWIGYSMLLNMLRVEDIDPENLLKRSFHQYQQES 669
Query: 1080 FTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIAR-FCNRFPNIDMSY 1138
F L +C + E + Q++ +L + R F N+ +
Sbjct: 670 FIPQLVDKCDQMEQEKKEIIIRDETSVTEYSSIKAQLA--KLREAMRDFINQPTYVQPFL 727
Query: 1139 KVQDSENVRAGGEDTTLQVVL 1159
+R G D V+L
Sbjct: 728 TAGRIVRIREGSTDWGYGVIL 748
>RGD|1304984 [details] [associations]
symbol:Sec63 "SEC63 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0001889 "liver development" evidence=ISO]
[GO:0006807 "nitrogen compound metabolic process" evidence=ISO]
[GO:0008565 "protein transporter activity" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=ISO]
[GO:0031204 "posttranslational protein targeting to membrane,
translocation" evidence=IEA] [GO:0072001 "renal system development"
evidence=ISO] InterPro:IPR027137 InterPro:IPR001623 Pfam:PF00226
RGD:1304984 GO:GO:0006457 Gene3D:1.10.287.110 PRINTS:PR00625
SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 EMBL:CH474025 CTD:11231
KO:K09540 PANTHER:PTHR24075 GeneTree:ENSGT00390000001965
EMBL:AC094571 IPI:IPI00392649 RefSeq:NP_001101107.1
UniGene:Rn.24233 Ensembl:ENSRNOT00000036365 GeneID:309858
KEGG:rno:309858 UCSC:RGD:1304984 NextBio:661402 Uniprot:D4A2Z6
Length = 727
Score = 125 (49.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 53/187 (28%), Positives = 80/187 (42%)
Query: 996 PKCTDPH-VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLS--- 1051
P T P+ +KA LL +H + + L+ DQ+ +L LLQ MV+VI ++
Sbjct: 291 PPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIIMARSR 350
Query: 1052 ---------LALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVF 1100
LA L M++SQM QG+ + S LLQLPH +D +R + I+++
Sbjct: 351 EEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKFKIKSIQ 410
Query: 1101 XXXXXXXXXXXXXXQ-MSDVQLLDIARFCNRFPNIDMSYKVQ-----DSENVRAGGEDTT 1154
+ D + ++ FP + M K Q DS N+ G T
Sbjct: 411 DLVSLKEADRHSLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
Query: 1155 LQVVLER 1161
L V L R
Sbjct: 471 L-VKLTR 476
Score = 94 (38.1 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 34/103 (33%), Positives = 48/103 (46%)
Query: 951 TSKTKMKGLLEVLASASEY-----AQLPIRPGEEELVRRLINHQ---RFSFANPKCTDPH 1002
T MK L+ VLA ASE+ RP + L+ +LI P T P+
Sbjct: 238 TRNMDMKRLIMVLAGASEFDPQYNKDATSRPTDNVLIPQLIREIGSINLKKNEPPLTCPY 297
Query: 1003 -VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVI 1044
+KA LL +H + + L+ DQ+ +L LLQ MV+VI
Sbjct: 298 SLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVI 340
Score = 81 (33.6 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 36/124 (29%), Positives = 49/124 (39%)
Query: 1135 DMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDA-- 1192
D+S K DSE E+T E+D G + + K E W +
Sbjct: 568 DISDKGSDSEE-----EETNRDSQSEKDDGSDRDSDREQDEKQSKDDEAEWQELQQSIQR 622
Query: 1193 KTNQLLAIK-RVSLQRKS----RAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVD 1247
K LL K +++ S +L F AP G YT+ DSYMG DQ ++
Sbjct: 623 KERALLETKSKITHPVYSLYFPEVELKFPAPGRPGNHQYTVFLRSDSYMGLDQTKPLKLE 682
Query: 1248 VKEA 1251
V EA
Sbjct: 683 VHEA 686
Score = 51 (23.0 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 253 EIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
+IVL GW+ A K+SK T R + P N P + +++K+
Sbjct: 76 KIVLLAGWALFLFLAYKVSK--TDREYQEYNPYEVLNLDPGATVAEIKKQ 123
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 131 (51.2 bits), Expect = 0.00033, P = 0.00033
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + + + + +L P + +QM
Sbjct: 644 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLPGEYVQMA 701
Query: 66 GRAGRPQYDSYGEGIIIT-GH-SEL-QYYLSLMNQQLPIESQFVSKLAELLN 114
GRAGR D G I++ G E+ + +M + ++SQF +LN
Sbjct: 702 GRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILN 753
Score = 107 (42.7 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 57/225 (25%), Positives = 97/225 (43%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 328 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 381
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-G 588
+ LT D++L + +I T E S + ++ + I DE+H I
Sbjct: 382 L----LTG----DVQLHPEASCLIMTTEI--LRSMLYSGSDVIRDLEWVIFDEVHYINDA 431
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
+ G V E ++ + V + + +L A +G ++ RPV
Sbjct: 432 ERGVVWEEVLIML---PDHVSIILLSATVPNALEFADWIGR---LKRRQIYVISTVARPV 485
Query: 649 PLEIQI--------QGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685
PLE + QG ++R TK Y A+ AK E+
Sbjct: 486 PLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAV--EAKKER 528
Score = 86 (35.3 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 668 AMTKPTYTAIMQHAKN--EKPALVFVPSR-----KYARLTAVDLMIYSCKDSDQKSAFLL 720
A + Y +++ + + P +VF SR + + LT++DL S + + FL
Sbjct: 548 AQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSS--EKSEIHLFLQ 605
Query: 721 -CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 606 RCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETF 665
Query: 780 CWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A M L+ +QM G AGR LD + ++LC
Sbjct: 666 AMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 719
Score = 38 (18.4 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 392 PPTELLDLQLLPV 404
PP + LDL L PV
Sbjct: 10 PPPDPLDLPLRPV 22
>UNIPROTKB|P30015 [details] [associations]
symbol:lhr "member of ATP-dependent helicase superfamily
II" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 InterPro:IPR013701
Pfam:PF00270 Pfam:PF00271 Pfam:PF08494 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:L01622 PIR:G64922 RefSeq:NP_416170.1 RefSeq:YP_489917.1
ProteinModelPortal:P30015 SMR:P30015 DIP:DIP-10097N IntAct:P30015
MINT:MINT-1293547 PaxDb:P30015 PRIDE:P30015
EnsemblBacteria:EBESCT00000003531 EnsemblBacteria:EBESCT00000018334
GeneID:12931274 GeneID:946156 KEGG:ecj:Y75_p1630 KEGG:eco:b1653
PATRIC:32118608 EchoBASE:EB1510 EcoGene:EG11548 eggNOG:COG1201
HOGENOM:HOG000238716 KO:K03724 OMA:PRLVWDR ProtClustDB:PRK09751
BioCyc:EcoCyc:EG11548-MONOMER BioCyc:ECOL316407:JW1645-MONOMER
Genevestigator:P30015 Uniprot:P30015
Length = 1538
Score = 119 (46.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 79/350 (22%), Positives = 151/350 (43%)
Query: 493 QRASETGVMRAVYIAPIEALAK--QR--------YCDWERKFGK-ELGMCVVELTVET-A 540
+ A + R +YI+PI+AL QR D R+ G+ E+ + V T +T A
Sbjct: 78 REAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPA 137
Query: 541 MDLKLLEKG--QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVI 597
+ L + I+I+TPE L + R+ ++ V IIDE+H + G + G L +
Sbjct: 138 QERSKLTRNPPDILITTPESL-YLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALS 196
Query: 598 VARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVR-P-VPLEIQIQ 655
+ R+ + + + + LS ++ +A D+ ++G PP +R P + + + +
Sbjct: 197 LERLDAL---LHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVA 253
Query: 656 GVDITNFEA----------RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYA-RLTAVDL 704
+D + A R ++ T I+ + +VF SR A +LTA
Sbjct: 254 NMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLN 313
Query: 705 MIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTL 764
+Y+ + Q+S + A E + + + + + H ++K + +
Sbjct: 314 ELYAARL--QRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSH-HGSVSKEQRAITEQA 370
Query: 765 FEAGKIKVCVMSSSM-----CWEVPLTAHLATGRKMLILTTLLQMMGHAG 809
++G+++ V +SS+ V L +AT L + + LQ +G AG
Sbjct: 371 LKSGELRCVVATSSLELGIDMGAVDLVIQVATP---LSVASGLQRIGRAG 417
Score = 66 (28.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 471 LQLAPTGSGKTICAE-FAILR-------NHQRASETGVMRAVYIAPIEAL 512
L +APTGSGKT+ A +A+ R + + A + R +YI+PI+AL
Sbjct: 48 LVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKAL 97
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 97 (39.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 33/115 (28%), Positives = 62/115 (53%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
VL A T +GKT+ AE+A+ ++ R + R +Y +PI+AL+ Q+Y + +FG ++G
Sbjct: 216 VLVSAHTSAGKTVVAEYAVAQS-LRDKQ----RVIYTSPIKALSNQKYRELLAEFG-DVG 269
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 584
+ ++T+ D L + T E ++ R + +++V+ I DE+H
Sbjct: 270 LMTGDVTINP--DATCL------VMTTEILRSMLYRGSE--VMREVAWVIFDEIH 314
Score = 85 (35.0 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 40/148 (27%), Positives = 60/148 (40%)
Query: 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV----EPHVSIIQEEM 737
KN P +VF S++ A+ + D ++ V E + Q E
Sbjct: 452 KNYNPVIVFSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEH 511
Query: 738 LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS--SMCWEVPLTAHLATG-RK 794
+ LR G+G H GL +EV+ LF+ G +KV + S+ +P + T RK
Sbjct: 512 ILPLLRRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRK 571
Query: 795 MLILT-------TLLQMMGHAGRPLLDN 815
T +QM G AGR LD+
Sbjct: 572 FDGKTFRWISGGEYIQMSGRAGRRGLDD 599
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 140 (54.3 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 41/121 (33%), Positives = 63/121 (52%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA +V+ GTQ ++ + +L P + Q
Sbjct: 628 KEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRN--FRDLLPGEYTQCS 685
Query: 66 GRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNA 125
GRAGR D G +II SEL SL + + S+ +S+ N + L V+
Sbjct: 686 GRAGRRGLDVTGT-VIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNLLRVETL 744
Query: 126 K 126
+
Sbjct: 745 R 745
Score = 41 (19.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 707 YSCKDSDQK-SAFLLCSAKEVEPHVS 731
+SC+++ SAF+ EVEP +S
Sbjct: 1069 FSCEETIALLSAFVFDEKTEVEPTIS 1094
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 142 (55.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 40/111 (36%), Positives = 59/111 (53%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
++LVE LF +G V++L +T + G+N+PA TV+ Q ++ W L+ + MQM
Sbjct: 448 KELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRW--LTSGEYMQMS 505
Query: 66 GRAGRPQYDSYGEGIIITGHS-ELQYYLSLMNQQLPI-ESQFVSKLAELLN 114
GRAGR D+ G I+I S + Q LMN Q + S F +LN
Sbjct: 506 GRAGRRGIDTKGLSIVILDQSIDEQAARCLMNGQADVLNSAFHLSYGMILN 556
Score = 37 (18.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 359 KKQYTEEDHSLNFTVPIYEPL 379
K Q+ E D+ F I EP+
Sbjct: 938 KLQFNESDYLHQFKPDIMEPV 958
Score = 37 (18.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 506 IAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544
I EA+ + R ++ + LG C T+E +D+K
Sbjct: 826 ITNTEAIIQLRELKIRQRVLRRLGFC----TLENVIDIK 860
>TIGR_CMR|DET_0967 [details] [associations]
symbol:DET_0967 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000027
GenomeReviews:CP000027_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1205 InterPro:IPR018973
Pfam:PF09369 KO:K06877 HOGENOM:HOG000250411 OMA:ALWEPPL
InterPro:IPR022307 TIGRFAMs:TIGR03817 RefSeq:YP_181690.1
ProteinModelPortal:Q3Z7V9 STRING:Q3Z7V9 GeneID:3229689
KEGG:det:DET0967 PATRIC:21608983 ProtClustDB:CLSK935591
BioCyc:DETH243164:GJNF-968-MONOMER Uniprot:Q3Z7V9
Length = 764
Score = 103 (41.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 38/163 (23%), Positives = 75/163 (46%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
++ P SGK++C +L + S+ RA+Y+ P +ALA+ + + L
Sbjct: 73 IIVATPAASGKSLCYNLPVLE--KLLSDPNA-RALYLYPAKALAQDQLRSLKSLAVPSL- 128
Query: 530 MCVVELTV-------ETAMDLKLLEKGQIIISTPEKWDA--LSRRWKQRKYVQQVSLFII 580
+ E+ V + D++L K +II+S P+ L K ++++ + +I
Sbjct: 129 LADEEIAVYDGDTPGNSRADIRL--KARIILSNPDMLHVSILPSHQKWGRFLRHLEYVVI 186
Query: 581 DELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623
DE H+ G G L I+ R+R + + + + S ++A+
Sbjct: 187 DEAHIYRGVFGSHLANIIRRLRRLCRYYGSSPQFILSSATIAS 229
Score = 73 (30.8 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 37/156 (23%), Positives = 70/156 (44%)
Query: 829 EYYKKFLYEAFPVESHLHH---FLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYY 885
++ FL +A+P +LH +L F+ ++E K+ +DY T T LT+
Sbjct: 519 DFQTAFL-QAYPGAVYLHQGESYLVSRFDLNSQIALLEKKK--LDYYTVTRDLTEISIIE 575
Query: 886 NLQGVSHRHLSDHLSEL-VENTISDL----EATRSIIMEDDMDLCPSNYGMIASYYYISY 940
L+ +S +L ++ V T++ + T ++ E+ +DL P + IA ++ +
Sbjct: 576 VLKNKLVGDISVYLGKVDVTLTVTGYRRKAQFTEQVLSEEQLDLPPQTFPTIAVWFKLPS 635
Query: 941 KTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRP 976
+ S KTKM A+E+A + + P
Sbjct: 636 DIV-----SAMGKTKMD--FHGAIHAAEHALIGLLP 664
>UNIPROTKB|E3W980 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 GO:GO:0004386 EMBL:AC096768
HGNC:HGNC:18536 IPI:IPI00965172 ProteinModelPortal:E3W980
SMR:E3W980 Ensembl:ENST00000510985 UCSC:uc010ikb.3
ArrayExpress:E3W980 Bgee:E3W980 Uniprot:E3W980
Length = 1034
Score = 130 (50.8 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 64/294 (21%), Positives = 125/294 (42%)
Query: 581 DELHLIG-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVF 639
++LH+IG G G LE+ +A++ Y + + I+ +S +L N +DL +++ A +
Sbjct: 396 EKLHMIGEGSRGATLEMTLAKILYTSKTTQ----IIGMSATLNNVEDLQKFLQAEYY-TS 450
Query: 640 NFPPGVRPVPLEIQ--IQGVD-----------ITNFEAR--MKAMTKPTYTAIMQHAKNE 684
F P L+I I VD + N++ +K M A++
Sbjct: 451 QFRPVELKEYLKINDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPN 510
Query: 685 KPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSA-KEVEPHVSIIQEEMLRATLR 743
LVF PS+K A + + K+ + C K ++ + +L+ T+
Sbjct: 511 YSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIP 570
Query: 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL- 802
GV Y H GL +++++ + G + + +S++ V L A R + L
Sbjct: 571 FGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLK 630
Query: 803 -----QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
QM+G AGR +D + +++ K+ + + + P+E+ H + +
Sbjct: 631 RNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLELITK--PLENCYSHLVQE 682
Score = 48 (22.0 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIE 510
L+ L PT GKT+ AE +L+ + +M Y+A ++
Sbjct: 355 LIYSL-PTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQ 395
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1254 1240 0.00079 124 3 11 22 0.38 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 142
No. of states in DFA: 631 (67 KB)
Total size of DFA: 551 KB (2250 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 105.94u 0.12s 106.06t Elapsed: 00:00:05
Total cpu time: 106.02u 0.12s 106.14t Elapsed: 00:00:05
Start: Tue May 21 15:34:01 2013 End: Tue May 21 15:34:06 2013
WARNINGS ISSUED: 1