BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000849
(1254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 1483 bits (3840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1389 (54%), Positives = 950/1389 (68%), Gaps = 186/1389 (13%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL LD
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 848
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QMLGRAGRPQYD+ GEGI+IT H ELQYYLSL+NQQLPIESQ VSKL ++LNAEIVLG
Sbjct: 849 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 908
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
VQNAK+A NW+ Y YLY RMLR+P LYG+S + L D L +R DL+HTAA +LD+NN
Sbjct: 909 NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN 968
Query: 179 LVKYGRKSGYFQ------------------------------------------------ 190
LVKY +K+G FQ
Sbjct: 969 LVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNIT 1028
Query: 191 -SEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SA 244
E+ K+EL KLL+RVPIPVKES+EEPSAKINVLLQ +ISQLKLEG +L +DM SA
Sbjct: 1029 VREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSA 1088
Query: 245 GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
GRL RA+FEIVL RGW+QL +K L L KM+ KRMW PLRQF +P E++ K+EKK+F
Sbjct: 1089 GRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNF 1148
Query: 305 --------------------FLGK-------------------PITRTVLRVELTITPDF 325
+GK PITR+ L+VELTITPDF
Sbjct: 1149 PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDF 1208
Query: 326 QWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ--- 382
QWD+KVHG E FW++VED D + ILHHEYFLLK +Y +++H + F VP++EPLPPQ
Sbjct: 1209 QWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFI 1268
Query: 383 -------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQN-YKLF 422
HLILPEK+PPPTELLDLQ LPV+AL+N ++E+LYQ+ + F
Sbjct: 1269 RVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFF 1328
Query: 423 NPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTI 482
NPIQTQVF +YN++DNV V A PTGSGKTI
Sbjct: 1329 NPIQTQVFNTVYNSDDNVFVGA------------------------------PTGSGKTI 1358
Query: 483 CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
CAEFAILR ++SE R VYI P+EALA+Q Y DW KF L VV LT ET+ D
Sbjct: 1359 CAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1415
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
LKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI +RMR
Sbjct: 1416 LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1475
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
YI+SQ+E IRIVALS+SL+NAKD+ W+G S+ FNF P VRPVPLE+ IQG +I++
Sbjct: 1476 YISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1535
Query: 663 EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
+ R+ +M KP Y AI +H+ +KP +VFVPSRK RLTA+D++ +C Q+ FL C+
Sbjct: 1536 QTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILT-TCAADIQRQRFLHCT 1593
Query: 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
K++ P++ + + L+ TL GVGYLHEGL+ ++ +V LF +G I+V V S S+CW
Sbjct: 1594 EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWG 1653
Query: 783 VPLTAHLATGRKMLILTT-----------------LLQMMGHAGRPLLDNSEKCVILCHA 825
+ + AHL ++I+ T +LQM+GHA RPL D+ +CVI+C
Sbjct: 1654 MNVAAHL-----VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1708
Query: 826 PHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNP 882
K+++KKFLYE PVESHL H +HD+FNAEIV IENKQDAVDYLTWTF R+TQNP
Sbjct: 1709 SKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNP 1768
Query: 883 NYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKT 942
NYYNLQG+SHRHLSDHLSELVE T+SDLE ++ I +ED+MD+ P N GMIA+YYYI+Y T
Sbjct: 1769 NYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTT 1828
Query: 943 IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPH 1002
IE FS SL +KTK++GL+E++++A+EY +PIR E+ L+R+L NPK DPH
Sbjct: 1829 IELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPH 1888
Query: 1003 VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1062
VK N LLQAH S + L+ D E++L A RL+QA VDV+SSNGWLS AL AME++QM
Sbjct: 1889 VKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQM 1948
Query: 1063 VTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLL 1122
VTQ MW DS L QLPHFT + KRC + + +E+VFD++EMED+ER LLQ++D Q+
Sbjct: 1949 VTQAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIA 2005
Query: 1123 DIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKE 1182
D+ARFCNR+PNI++SY+V D +++R+GG L V LER+ GPV + +P+ +E
Sbjct: 2006 DVARFCNRYPNIELSYEVVDKDSIRSGGPVVVL-VQLERE---EEVTGPVIAPLFPQKRE 2061
Query: 1183 EGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEY 1242
EGWW+V+ DAK+N L++IKR++LQ+K++ KLDF AP G YTL FM D+YMGCDQEY
Sbjct: 2062 EGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGA-HNYTLYFMSDAYMGCDQEY 2120
Query: 1243 SFTVDVKEA 1251
F+VDVKEA
Sbjct: 2121 KFSVDVKEA 2129
Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 242/891 (27%), Positives = 409/891 (45%), Gaps = 118/891 (13%)
Query: 400 QLLPVTALQNPSY-EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQ 458
QLLPV L P Y +A ++ +K N IQ++++ T++N+L+ A
Sbjct: 460 QLLPVEKL--PKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCA-------------- 503
Query: 459 RITAALPNIILVLQLAPTGSGKTICAEFAILR------NHQRASETGVMRAVYIAPIEAL 512
PTG+GKT A +LR N + +YIAP+ +L
Sbjct: 504 ----------------PTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSL 547
Query: 513 AKQRYCDWERKFGKEL---GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQR 569
++ FGK L G+ V ELT + + + + QII+ TPEKWD ++R+ +R
Sbjct: 548 VQEMVG----SFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 570 KYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGE 629
Y Q V L I+DE+HL+ GPVLE +VAR + +R++ LS +L N +D+
Sbjct: 604 TYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 630 WIGAS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPA 687
++ + G+F F RPVPLE G+ R + M + Y IM+HA KN+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ--V 721
Query: 688 LVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEM-------LRA 740
LVFV SRK TA + C + D FL +E +++ E L+
Sbjct: 722 LVFVHSRKETGKTARAIRDM-CLEKDTLGLFL----REGSASTEVLRTEAEQCKNLELKD 776
Query: 741 TLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILT- 799
L G H G+ + D+ +V LF I+V V ++++ W V L AH + + +
Sbjct: 777 LLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSP 836
Query: 800 -----------TLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHF 848
+LQM+G AGRP D + +++ +YY L + P+ES +
Sbjct: 837 EKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSK 896
Query: 849 LHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVEN 905
L D NAEIV G ++N +DAV++L + + R+ ++P Y G+SH L L++
Sbjct: 897 LPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLY---GISHDDLKG--DPLLDQ 951
Query: 906 TISDLEATRSIIMEDD----MDLCPSNY-----GMIASYYYISYKTIECFSSSLTSKTKM 956
DL T +++++ + D N+ G IAS+YYI+ T++ ++ L
Sbjct: 952 RRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSE 1011
Query: 957 KGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSAR 1016
L V + +SE+ + +R E+ +++L+ +P K N LLQA S
Sbjct: 1012 IELFRVFSLSSEFKNITVREEEKLELQKLLERVPIP-VKESIEEPSAKINVLLQAFISQL 1070
Query: 1017 HMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLL 1075
+EG L D V SA RL++A+ +++ + GW L + + +M+ + MW+ L
Sbjct: 1071 KLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLR 1130
Query: 1076 QLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNID 1135
Q +++ K+ E E ++DL +E EL++M + I ++ + FP ++
Sbjct: 1131 QFRKLPEEVVKKI-EKKNFPFERLYDL---NHNEIGELIRMPKMGKT-IHKYVHLFPKLE 1185
Query: 1136 MSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYS-NRYPKAKEEGWWLVVDDAKT 1194
+S +Q +TL+V L + P + + E +W++V+D +
Sbjct: 1186 LSVHLQPITR-------STLKVEL--------TITPDFQWDEKVHGSSEAFWILVEDVDS 1230
Query: 1195 NQLLAIKRVSLQRK---SRAKLDFAAPV-EGGKKTYTLDFMCDSYMGCDQE 1241
+L + L+ K + F PV E Y + + D ++ C+ +
Sbjct: 1231 EVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQ 1281
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 1402 bits (3630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/1392 (51%), Positives = 934/1392 (67%), Gaps = 182/1392 (13%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVYNPEKG W ELS LD
Sbjct: 789 MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALD 848
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QMLGRAGRPQYD+ GEGI+IT HSELQ+YLSL+NQQLPIESQF+SKL ++LNAEIVLG
Sbjct: 849 VLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLG 908
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TVQ+ ++A NW+ YTYLY RMLRNP LYG+S + + D L + DL+HTAA L+R+
Sbjct: 909 TVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSG 968
Query: 179 LVKYGRKSGYFQ------------------------------------------------ 190
L+KY RK+G+FQ
Sbjct: 969 LIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHIS 1028
Query: 191 -SEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SA 244
E+ K+EL KL++RVPIP+KES+EE SAK+NVLLQ YISQLKLEG +L SDM SA
Sbjct: 1029 VREEEKLELQKLMERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSA 1088
Query: 245 GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
RL RA+FEIVL RGW+QLA+K L L KM+ +RMW TPLRQF +P+EI KLEKK F
Sbjct: 1089 ARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHF 1148
Query: 305 FLGK---------------------------------------PITRTVLRVELTITPDF 325
G+ PITR LRVELTITPDF
Sbjct: 1149 PWGRLYDLEPHELGELIRVPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTITPDF 1208
Query: 326 QWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ--- 382
QWD+KVHG E FWV++ED D + ILHHE+FLLK++Y++++H L F VP++EPLPPQ
Sbjct: 1209 QWDEKVHGQSEGFWVLIEDVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFL 1268
Query: 383 -------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALY-QNYKLF 422
HLILPEK PPTELLDLQ LP++AL+ P +E+ Y Q + F
Sbjct: 1269 RIVSDRWIGAETQLPVSFRHLILPEKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQF 1328
Query: 423 NPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTI 482
NPIQTQVF +YN+++NV V A PTGSGK
Sbjct: 1329 NPIQTQVFNAVYNSDENVFVGA------------------------------PTGSGKMT 1358
Query: 483 CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
AEFAI+R S+ R VY+ EALA + DW KFG L + VV+LT ET D
Sbjct: 1359 IAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFGS-LDIKVVKLTGETGTD 1414
Query: 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
LKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+ GPVLE++ +RMR
Sbjct: 1415 LKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMR 1474
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
YI+SQ+E +IRIVALS SL +A+D+ +W+G + + FNF P VRP+PLE+ IQG ++T+
Sbjct: 1475 YISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHN 1534
Query: 663 EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
R+ M+KP Y AI++++ + KP +VFV SRK ARLTA+D++ Y+ D Q + F
Sbjct: 1535 ATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAASDL-QPNRFFHAE 1592
Query: 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
++++P + + ++ L+ TL GV YLHEGL+ SD +V LF++G ++V V+S +CW
Sbjct: 1593 EEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWG 1652
Query: 783 VPLTAHLA--------TGRKMLI----LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830
+ ++AHL G+ +T +LQM+G A RP D KCV++C + K++
Sbjct: 1653 MSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDF 1712
Query: 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
+KKF+ E P+ESHL H +HD+FNAE+V IENKQDAVDYLTWTF RLTQNPNYYNL
Sbjct: 1713 FKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNL 1772
Query: 888 QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFS 947
QGV+HRHLSDHLSELVENT+SDLE ++ I +EDDMD P N GMIA+YYYI+Y TIE FS
Sbjct: 1773 QGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFS 1832
Query: 948 SSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINH--QRFSFAN---PKCTDPH 1002
SL SKTK++GLLE+++SA+EY + +R EE+++R L + + N PK DPH
Sbjct: 1833 LSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPH 1892
Query: 1003 VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1062
+K N LLQAH S + L+ D E++L A RL+QA VDV+SSNGWLS A+ AME++QM
Sbjct: 1893 IKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQM 1952
Query: 1063 VTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLL 1122
VTQ MW DS L QLPHF+ ++ KRC E + IETVFD++E+ED++R LLQ+SD+Q+
Sbjct: 1953 VTQAMWSKDSYLKQLPHFSPEIVKRCTE---KKIETVFDIMELEDEDRTRLLQLSDLQMA 2009
Query: 1123 DIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKE 1182
D+ARFCNR+PNI+++Y+V D + + +G +T+ VV++ + GPV + +P+ +E
Sbjct: 2010 DVARFCNRYPNIELNYEVVDKDRINSG---STVNVVVQLEREDEV-TGPVIAPFFPQKRE 2065
Query: 1183 EGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEY 1242
EGWW+V+ D KTN LL+IKR++LQ+K++ KLDF AP GK YTL +M DSY+GCDQEY
Sbjct: 2066 EGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAP-SPGKHDYTLYYMSDSYLGCDQEY 2124
Query: 1243 SFTVDVKEAGEE 1254
F+++V + E
Sbjct: 2125 KFSIEVGDFQSE 2136
Score = 283 bits (725), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 241/887 (27%), Positives = 428/887 (48%), Gaps = 110/887 (12%)
Query: 400 QLLPVTALQNPSY-EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQ 458
+L PV L P Y + +++ +K N IQ++++ ++++N+L+ A
Sbjct: 460 ELQPVDKL--PKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCA-------------- 503
Query: 459 RITAALPNIILVLQLAPTGSGKTICAEFAILRN-HQRASETGVMRA-----VYIAPIEAL 512
PTG+GKT A ++R + +E G + A +Y+AP+++L
Sbjct: 504 ----------------PTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSL 547
Query: 513 AKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 572
++ ++ R+ + V ELT + + + + Q+I+ TPEKWD ++R+ +R +V
Sbjct: 548 VQEMVGNFGRRLAC-YNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFV 606
Query: 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG 632
V L IIDE+HL+ + GPVLE +VAR + ++R+V LS +L N +D+ ++
Sbjct: 607 SLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLR 666
Query: 633 AS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFV 691
G+F F RPV LE Q GV R + M + Y M+HA + LVFV
Sbjct: 667 VKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQ-VLVFV 725
Query: 692 PSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVE---PHVSIIQEEMLRATLRLGVGY 748
SRK TA + C + D +FL + +E ++ L+ L G
Sbjct: 726 HSRKETGKTARAVRDM-CLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAI 784
Query: 749 LHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA-----------TGRKM-L 796
H G+ + D+ +V LF I+V V ++++ W V L AH GR + L
Sbjct: 785 HHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVEL 844
Query: 797 ILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAE 856
+LQM+G AGRP D + +++ + ++Y L + P+ES L D NAE
Sbjct: 845 SALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAE 904
Query: 857 IVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRH------LSDHLSELVENTI 907
IV G +++ QDAV++L +T+ R+ +NP Y GVSH L H ++L+
Sbjct: 905 IVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLY---GVSHDAIKADPLLEQHRADLLHTAA 961
Query: 908 SDLEATRSIIMEDDMD---LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLA 964
LE RS +++ D ++ G IAS+YY++++T+ ++ L L V +
Sbjct: 962 CCLE--RSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRVFS 1019
Query: 965 SASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPH-VKANALLQAHFSARHMEG-NL 1022
+SE+ + +R E+ +++L+ +R + + H K N LLQA+ S +EG L
Sbjct: 1020 LSSEFRHISVREEEKLELQKLM--ERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFAL 1077
Query: 1023 KLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTK 1082
D + SA+RL++A+ +++ + GW LA + + +M+ + MW+ + L Q
Sbjct: 1078 MSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPD 1137
Query: 1083 DLAKRCQENP---GRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYK 1139
++AK+ ++ GR L ++E E EL+++ + I +F ++FP +++S
Sbjct: 1138 EIAKKLEKKHFPWGR-------LYDLEPHELGELIRVPKLGKT-IHKFVHQFPKLELSTH 1189
Query: 1140 VQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYS-NRYPKAKEEGWWLVVDDAKTNQLL 1198
+Q + G TL+V L + P + + + EG+W++++D + +L
Sbjct: 1190 IQP---ITRG----TLRVEL--------TITPDFQWDEKVHGQSEGFWVLIEDVDSELIL 1234
Query: 1199 AIKRVSLQRK---SRAKLDFAAPV-EGGKKTYTLDFMCDSYMGCDQE 1241
+ L++K +L F PV E Y L + D ++G + +
Sbjct: 1235 HHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQ 1281
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 1267 bits (3278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/1390 (46%), Positives = 880/1390 (63%), Gaps = 177/1390 (12%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVEDLF D H+QVL STA LAWGVNLPAHTVIIKGTQ+YNPEKG WTEL LD
Sbjct: 782 MNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALD 841
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
IMQMLGRAGRPQYD GEGI+IT HSELQYYLSLMNQQLP+ESQ VS+L ++LNAE+VLG
Sbjct: 842 IMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLG 901
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TV + EA NW+ YT+L+ RML+NP LYG++ E D L +R DLIHTA +LD+
Sbjct: 902 TVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAG 961
Query: 179 LVKYGRKSGYFQSEKI-------------------------------------------- 194
L+KY ++SG Q+ ++
Sbjct: 962 LIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLS 1021
Query: 195 -----KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SA 244
K+EL K+ + PIP+KE+L+E SAK NVLLQ YISQLKLEG +L +DM SA
Sbjct: 1022 VRDEEKLELQKMAEHAPIPIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSA 1081
Query: 245 GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
GRL RALFEIVL RGW+ LA+K L L KMVT+R W PL QF IP+E++ ++KK++
Sbjct: 1082 GRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNY 1141
Query: 305 F--------------------LGKP-------------------ITRTVLRVELTITPDF 325
+GKP ITRT +R+ELTITPDF
Sbjct: 1142 SFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDF 1201
Query: 326 QWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPP---- 381
+WD+KVHG E FW+ +ED DG+ ILHHE+FLLK+++ ++H + VP+++P+PP
Sbjct: 1202 KWDEKVHGSAEGFWIFIEDTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYV 1261
Query: 382 ------------------QHLILPEKFPPPTELLDLQLLPVTALQNPSYEALY--QNYKL 421
+HLILPEK+PPPTELLDLQ LP++A+ N ++ ++ +K+
Sbjct: 1262 RIVSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKV 1321
Query: 422 FNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKT 481
FNPIQTQVF ++ + +NV+V A P GSGKT
Sbjct: 1322 FNPIQTQVFRTVFESNENVIVCA------------------------------PNGSGKT 1351
Query: 482 ICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM 541
AE A+LR+ + E +AVYI P+E +A + Y DW+R+ +G +V LT E M
Sbjct: 1352 AIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTM 1408
Query: 542 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARM 601
DLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG G V EV+ +R
Sbjct: 1409 DLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT 1468
Query: 602 RYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITN 661
RYI+SQ+E+ +R+VALS+SL NA+DLG W+G S+ FNF P RPVPL+++I+ ++++
Sbjct: 1469 RYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSH 1528
Query: 662 FEARMKAMTKPTYTAIMQHAKN--EKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
+R AM +P Y AI +HA KPALVFVP R+ R AV L+ + D K
Sbjct: 1529 NASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLR 1588
Query: 720 LCSAKEV-EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
L + + ++ I++E LR ++ GVG+LHEG D +V LFE+ I+VCV+
Sbjct: 1589 LAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRG 1648
Query: 779 MCWEVPLTAHLA--------TGRKMLI----LTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
MC+++ ++A+L G+ + + +L M+G A RP+LD+ KCV++C
Sbjct: 1649 MCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTS 1708
Query: 827 HKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPN 883
+ YYKKFL + PVESHL H LHD+FNAEIV IENKQDA+DYLTWT R+TQNPN
Sbjct: 1709 KRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPN 1768
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTI 943
YYNLQG +HRHLSD LSELVE T+ DLE ++ I ++D+MD N GMIASYYYISY+TI
Sbjct: 1769 YYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTI 1828
Query: 944 ECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHV 1003
E FS SL KTK + L+E+++++SE+ +P+R E+ ++R+L N K TDPHV
Sbjct: 1829 ELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHV 1888
Query: 1004 KANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1063
K N L+ AH S + L D E ++L A RL+QA VDV+SSNGWLS A+ AME+SQM+
Sbjct: 1889 KVNLLIHAHLSRVKLTAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQML 1948
Query: 1064 TQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLD 1123
TQ M+ ++ L QLPH + L +R + + + +VF+LLE+E+D+R ++LQM +L D
Sbjct: 1949 TQAMYSNEPYLKQLPHCSAALLERAK---AKEVTSVFELLELENDDRSDILQMEGAELAD 2005
Query: 1124 IARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYP-KAKE 1182
+ARFCN +P+I+++ ++++ +V ++ L V LERD PV + +P K KE
Sbjct: 2006 VARFCNHYPSIEVATELEN--DVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKE 2063
Query: 1183 EGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEY 1242
EGWWLV+ D+++N LL IKR+ + KS +LDFAAP G K + L F+ DSY+G DQE+
Sbjct: 2064 EGWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAPRPGHHK-FKLFFISDSYLGADQEF 2122
Query: 1243 SFTVDVKEAG 1252
V+E G
Sbjct: 2123 DVAFKVEEPG 2132
Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 213/771 (27%), Positives = 365/771 (47%), Gaps = 78/771 (10%)
Query: 470 VLQLAPTGSGKTICAEFAILR---NHQRASETGVMR-----AVYIAPIEALAKQRYCDWE 521
+L APTG+GKT A +L+ NH +E G ++ VYIAP+++L ++ +
Sbjct: 493 LLLCAPTGAGKTNVALLTMLQEIGNH--LAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFS 550
Query: 522 RKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIID 581
++ G+ V E+T + M + Q+I+ TPEK+D ++R+ +R Y Q V L IID
Sbjct: 551 KRLAP-FGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIID 609
Query: 582 ELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNF 641
E+HL+ GPVLE IV R Q ++ R+V LS +L N +D+ ++ + F
Sbjct: 610 EIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEHLHFF 669
Query: 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTA 701
RPVPLE Q GV R +AM + Y IM+HA + LVFV SRK TA
Sbjct: 670 DNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQ-VLVFVHSRKETAKTA 728
Query: 702 VDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEM-------LRATLRLGVGYLHEGLN 754
+ +C + D SAF+ +E I++ E L+ L G H G+N
Sbjct: 729 KAIR-DACLEKDTLSAFM----REGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMN 783
Query: 755 KSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILT------------TLL 802
+ D+ +V LF I+V ++++ W V L AH + I ++
Sbjct: 784 RVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIM 843
Query: 803 QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVI 862
QM+G AGRP D+ + +++ + +YY + + PVES + L D NAE+V G +
Sbjct: 844 QMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTV 903
Query: 863 ENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIME 919
+ +A ++L +TF R+ +NP Y G++H L+E +DL T +++
Sbjct: 904 SSVSEATNWLGYTFLFVRMLKNPTLY---GITHEQA--RADPLLEQRRADLIHTACVLL- 957
Query: 920 DDMDLC----------PSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEY 969
D L + G IAS++Y +Y++++ ++ L L + + +SE+
Sbjct: 958 DKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEF 1017
Query: 970 AQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEK 1028
L +R E+ ++++ H + K N LLQA+ S +EG L+ D
Sbjct: 1018 KLLSVRDEEKLELQKMAEHAPIPIKE-NLDEASAKTNVLLQAYISQLKLEGFALQADMVF 1076
Query: 1029 VLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRC 1088
V SA RL +A+ +++ GW LA + + +MVTQ W + L Q ++ R
Sbjct: 1077 VAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVV-RS 1135
Query: 1089 QENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRA 1148
+ S + ++DL + + +L++M + + +F +FP ++M+ +Q
Sbjct: 1136 IDKKNYSFDRLYDL---DQHQLGDLIKMPKMG-KPLFKFIRQFPKLEMTTLIQPITR--- 1188
Query: 1149 GGEDTTLQVVLERDLGGRTELGPVYS-NRYPKAKEEGWWLVVDDAKTNQLL 1198
TT+++ L + P + + EG+W+ ++D ++L
Sbjct: 1189 ----TTMRIEL--------TITPDFKWDEKVHGSAEGFWIFIEDTDGEKIL 1227
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 1168 bits (3022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/1401 (44%), Positives = 873/1401 (62%), Gaps = 195/1401 (13%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R DR LVEDLF D +QVL+STA LAWGVNLPAHTVIIKGTQ+YNPEKG W ELSPLD
Sbjct: 859 LSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLD 917
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+ QMLGRAGRP +D GEGIIIT ELQ+YLSL+N QL IESQF+S++A+ LNAEIVLG
Sbjct: 918 VTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLG 977
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
++Q ++A NW+ YTYLY M+RNP LY +S + D L +R DL+H+AA +L++N+
Sbjct: 978 SIQTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNS 1037
Query: 179 LVKYGRKSGYFQSEKI-------------------------------------------- 194
L+KY RKSG QS ++
Sbjct: 1038 LIKYDRKSGKLQSTELGKVASHYYITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVV 1097
Query: 195 -----KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SA 244
K EL KLL+RVPIP+KE++EEPS+KINVLLQTYIS LKL+G +L DM SA
Sbjct: 1098 VREGEKFELEKLLERVPIPIKENIEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSA 1157
Query: 245 GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK-- 302
R++RALFEIVLK+GW+QLA+K L L+KM+ +MWS Q+PLRQF+ I ++L +LE++
Sbjct: 1158 SRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGI 1217
Query: 303 ---DFF------LG----------------------------KPITRTVLRVELTITPDF 325
D + LG +PI +LRVEL+ITPDF
Sbjct: 1218 PIEDLYEYNSQQLGNAIQNPSEGKQLFDLIHNFPKLDLTAHVQPILHGLLRVELSITPDF 1277
Query: 326 QWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTE-EDHSLNFTVPIYEPLPPQ-- 382
Q+D++ H +W+IVED DG+ IL+ EYF LKK+ ED ++FTVP+ +PLPPQ
Sbjct: 1278 QYDERYHNNSIGWWIIVEDVDGERILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYY 1337
Query: 383 --------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQ-NYKL 421
HLILPEK+PP LLDLQ LP+ L++P E++++ + +
Sbjct: 1338 VRVISDHWIGAEYSLPISFQHLILPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSI 1397
Query: 422 FNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKT 481
FN IQTQVF +Y + DN ++A PT SGKT
Sbjct: 1398 FNAIQTQVFNCMYQSNDNAFISA------------------------------PTNSGKT 1427
Query: 482 ICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFG--KELGMCVVELTVET 539
+CAE A++R ++ + V VY+AP++ LA R DW KFG G+ V +LT +
Sbjct: 1428 VCAEIALIRCFKQNPKAKV---VYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGDA 1484
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D K+L++ II++ EKWD LSR+WKQRK +Q ++L I+DELHLIGG+ GP +E++V+
Sbjct: 1485 VTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGPTMEIVVS 1544
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
RMRYI++Q N +R++ALS+S+ANA+DL WIGA+ +NF P VRP+P+E QIQG +
Sbjct: 1545 RMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEYQIQGFEF 1604
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM--IYSCKDSDQKSA 717
+F ARM AMTKPT + ++ KN++ ++VFVP+RK +R A D++ + S +D+ K
Sbjct: 1605 PHFNARMLAMTKPTVYEVAKN-KNQQ-SIVFVPTRKLSRSLAADIIANVSSFEDTLTK-P 1661
Query: 718 FLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS 777
+L+C + P++ + L+ +L++GV + H+GL + ++ VV LF +G I+V + +
Sbjct: 1662 YLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATH 1721
Query: 778 SMCW---------EVPLTAHLATGRKMLI----LTTLLQMMGHAGRP-----LLDNSEKC 819
S+ W V + L G+ + + +LQM+G AG+ + + K
Sbjct: 1722 SVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKV 1781
Query: 820 VILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF--- 876
++LCHAP KEYYK FL E PVESHL H LHD FN+EIV I KQDA+DYLTWTF
Sbjct: 1782 LLLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYR 1841
Query: 877 RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMD-LCPSNYGMIASY 935
RL QNPNYYNL GVSH HLS+HLSELVENT+ +LE + I ++DD D + P N G+IASY
Sbjct: 1842 RLNQNPNYYNLSGVSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNLGIIASY 1901
Query: 936 YYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFAN 995
YY+ Y+TIE F SSL S T+ +G+++++++A E+ LPIR E++++ +L +H
Sbjct: 1902 YYLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHLPQKIDK 1961
Query: 996 PKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALL 1055
P + K N LLQ HFS + +L DQ+ +L +A+RLLQA+VDVISSN WL A+
Sbjct: 1962 PNYQEISTKVNVLLQCHFSRESISADLYQDQKFILENATRLLQAIVDVISSNSWLQPAIA 2021
Query: 1056 AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQ 1115
AME+SQM+TQ MW+ DS+ QLPH K +R + IE+VFDL+ ++D+ R +LL
Sbjct: 2022 AMELSQMITQAMWDSDSVFKQLPHMNK---RRIDAITSQGIESVFDLMSLDDNSRIQLLD 2078
Query: 1116 MSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTE------- 1168
+S + D+ + ++P+ID+SY+VQD +++ A T+++V+ERDLG E
Sbjct: 2079 LSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADS-IMTVEMVIERDLGDDEENPIEIND 2137
Query: 1169 -LGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYT 1227
+ V + YPK K GWW ++ D+K N LLAIKR++ +K++ K +F P GK +
Sbjct: 2138 SINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKKTKVKFEFPTPA-VGKHQLS 2196
Query: 1228 LDFMCDSYMGCDQEYSFTVDV 1248
L DSY GCDQE+ +++
Sbjct: 2197 LYLFSDSYNGCDQEHELNINI 2217
Score = 286 bits (732), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 235/863 (27%), Positives = 396/863 (45%), Gaps = 94/863 (10%)
Query: 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
K N +Q+++F + T++N+L++A PT SG
Sbjct: 550 KSLNRVQSKLFDCAFKTDNNLLLSA------------------------------PTSSG 579
Query: 480 KTICAEFAILR--NHQRASETGVMR-----AVYIAPIEALAKQRYCDWERKFGKELGMCV 532
KT A IL R ++G +R VYIAP+++L ++ ++ ++ K G+ V
Sbjct: 580 KTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRL-KSYGIVV 638
Query: 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 592
ELT + ++ K + + QII++TPEKWD ++R+ R Y Q V L IIDE+HL+ + GP
Sbjct: 639 NELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGP 698
Query: 593 VLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEI 652
VLE IVAR + + +R+V LS +L N +D+ ++ GVF F RP+PLE
Sbjct: 699 VLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPDGVFYFDSSYRPIPLEQ 758
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
Q G+ + +++ T+T + + + + L+FV SR+ T DL + +D
Sbjct: 759 QYIGISDRGIK-QLQRCNDITFTKVSERVGDHQ-ILIFVHSRRETAKTGKDLRDRAVEDQ 816
Query: 713 DQKSAFLLCSAKEVEPHVSI--IQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKI 770
+++E+ + IQ L+ L G+G H GL++SD+ +V LF +I
Sbjct: 817 SIDRYIRDPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRI 876
Query: 771 KVCVMSSSMCWEVPLTAHLATGRKMLILT-----------TLLQMMGHAGRPLLDNSEKC 819
+V + ++++ W V L AH + I + QM+G AGRP D +
Sbjct: 877 QVLISTATLAWGVNLPAHTVIIKGTQIYNPEKGWCELSPLDVTQMLGRAGRPPFDKEGEG 936
Query: 820 VILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFR-- 877
+I+ ++Y L +ES + DN NAEIV G I+ +DAV++L +T+
Sbjct: 937 IIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYI 996
Query: 878 -LTQNPNYYNLQGVSHRH---LSDHLSELVENTISDLEATRSIIMEDDMD--LCPSNYGM 931
+ +NP Y + L +LV + + LE S+I D L + G
Sbjct: 997 CMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKN-SLIKYDRKSGKLQSTELGK 1055
Query: 932 IASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRF 991
+AS+YYI+ ++ + L LL V + +SE+ + +R GE+ + +L+
Sbjct: 1056 VASHYYITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPI 1115
Query: 992 SFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWL 1050
+P K N LLQ + S ++G L +D + SASR+ +A+ +++ GW
Sbjct: 1116 PIKE-NIEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWA 1174
Query: 1051 SLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDER 1110
LA + +++M+ MW S L Q + + + E G IE DL E +
Sbjct: 1175 QLAKKILNLAKMIDSKMWSSQSPLRQFHKISPKVLNQL-ERRGIPIE---DLYEYNSQQL 1230
Query: 1111 RELLQ--MSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTE 1168
+Q QL D+ + FP +D++ VQ L +L +L +
Sbjct: 1231 GNAIQNPSEGKQLFDL---IHNFPKLDLTAHVQ-----------PILHGLLRVELSITPD 1276
Query: 1169 LGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLD----FAAPVEGG-K 1223
Y RY GWW++V+D ++L + SL++K D F P+
Sbjct: 1277 FQ--YDERY-HNNSIGWWIIVEDVDGERILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLP 1333
Query: 1224 KTYTLDFMCDSYMGCDQEYSFTV 1246
Y + + D ++G EYS +
Sbjct: 1334 PQYYVRVISDHWIGA--EYSLPI 1354
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/1384 (42%), Positives = 827/1384 (59%), Gaps = 179/1384 (12%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+R DRQ EDLF DG +QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTELSP D
Sbjct: 828 MRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQD 887
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QMLGRAGRPQ+D+YGEGIIIT HSELQYYLSLMNQQLPIESQF+ +LA+ LNAE+ LG
Sbjct: 888 VLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLG 947
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDIT-LGERITDLIHTAANVLDRNNL 179
TV++ ++ +W+ YTYLY RMLR+P LY + PE D L ++ DL+H+AA +L++ L
Sbjct: 948 TVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPEYDDDKYLVQKRADLLHSAAILLEKCKL 1007
Query: 180 VKYGRKSGYFQS------------------------------------------------ 191
+ Y R+SG +
Sbjct: 1008 LVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPV 1067
Query: 192 -EKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAG 245
E+ K+ELAKLL+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DM SAG
Sbjct: 1068 REEEKVELAKLLERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAG 1127
Query: 246 RLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF- 304
R+ RA+FEI L+RGWS +A +L KM+ KR+W +PLRQF P+E++ ++EKK+F
Sbjct: 1128 RIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFP 1187
Query: 305 --------------FLG------------------------KPITRTVLRVELTITPDFQ 326
+G +PITR+++RVEL I F
Sbjct: 1188 WQRYFDLDPAELGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFN 1247
Query: 327 WDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPP----- 381
WDD + G E FW++VED DGD +LH+E F L K+Y +++H +NFTVP+ EPLPP
Sbjct: 1248 WDDHLSGTSEAFWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIK 1307
Query: 382 -----------------QHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNP 424
Q LI+PEKFP PT LLDLQ PV++L NPS+ +LY N+K FN
Sbjct: 1308 IVSDRWLHSITKVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNK 1367
Query: 425 IQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICA 484
IQTQVF +Y T D+V + A P GSGKT+CA
Sbjct: 1368 IQTQVFNSVYKTNDSVFIGA------------------------------PNGSGKTVCA 1397
Query: 485 EFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK-ELGMCVVELTVETAMDL 543
E A+L +H + G AVYIAPI+ + +RY +W KF G +V+LT E + DL
Sbjct: 1398 ELALL-HHWSQEDYGT--AVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERSQDL 1454
Query: 544 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRY 603
KL++ +I TP +WD+LS+RW+ + +Q+V +I DEL L+GG GP+ E++++R+RY
Sbjct: 1455 KLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRIRY 1514
Query: 604 IASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFE 663
+A Q+E IR+V LS S+ANA+DLGEW+G S +FNF P RP PL I +Q IT+F
Sbjct: 1515 MAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITHFP 1574
Query: 664 ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSA 723
+ M AM+KP Y ++ K +VF P RK A+ A DL+ +S D D+ L S
Sbjct: 1575 SLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDE----YLFSL 1630
Query: 724 KEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE- 782
E E + +++ L+ +L+ G+ Y+ E + +DQ +V L+ G IKV + S + +
Sbjct: 1631 MENEA-FNKVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSL 1689
Query: 783 -------VPLTAHLATGRKMLI----LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYY 831
+ + G++ ++ LLQM+G + +++ KEYY
Sbjct: 1690 KAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYY 1749
Query: 832 KKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQ 888
KKFL E P+ESHL +LHD F +EI IE+KQDAVD+LTW++ RL NP YY LQ
Sbjct: 1750 KKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGLQ 1809
Query: 889 GVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPS-NYGMIASYYYISYKTIECFS 947
++H +S+ LS+LVE T++DL R I ++D+ D C + N MIAS+Y I+Y T++ F+
Sbjct: 1810 DITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTFA 1869
Query: 948 SSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANA 1007
SL+ +TKMKGLLE++ SA+EY QLPIR E+ ++ R+ + +NP DPH K+
Sbjct: 1870 LSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSFI 1929
Query: 1008 LLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1067
LL AHFS + L +DQ+ +L LL A VD +SS G L + ME+SQMVTQ +
Sbjct: 1930 LLAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQAL 1989
Query: 1068 WEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARF 1127
W+ DS L Q+P+F L +RC + + VFD+++++D++R ELL M + L A F
Sbjct: 1990 WDRDSPLKQIPYFDDALIERCNK---EGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEF 2046
Query: 1128 CNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELG-PVYSNRYPKAKEEGWW 1186
N++P+ID+ ++++DSE+V A + L V L R+L E+ V + +P K E WW
Sbjct: 2047 INKYPDIDIDFEIEDSEDVHANSP-SVLIVQLTRELEEDEEVDTTVIAPYFPAQKTEHWW 2105
Query: 1187 LVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTV 1246
LV+ D KT LLAIK+++L R K++F P G K Y L DSYMG D E F
Sbjct: 2106 LVISDDKT--LLAIKKITLGRSLTTKMEFVPPAMGTLK-YKLSCFSDSYMGVDYEKEFEC 2162
Query: 1247 DVKE 1250
+V E
Sbjct: 2163 NVLE 2166
Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 192/724 (26%), Positives = 350/724 (48%), Gaps = 68/724 (9%)
Query: 398 DLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAK 457
D +L+ + L S++A + N + N IQ+ ++ + + T++N+L+ A
Sbjct: 497 DERLVKIKELPEWSHQA-FLNTQSLNRIQSHLYPIAFGTDENILLCA------------- 542
Query: 458 QRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGV------MRAVYIAPIEA 511
PTG+GKT A IL Q+ + + VYIAP++A
Sbjct: 543 -----------------PTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKA 585
Query: 512 LAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKY 571
L ++ ++ ++ + V ELT ++ + + + + QII++TPEKWD ++R+ Y
Sbjct: 586 LVQEMVNNFSKRLTP-YNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSY 644
Query: 572 VQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI 631
V V L IIDE+HL+ + GPVLE IVAR+ + ++R+V LS +L N D+ ++
Sbjct: 645 VNLVRLVIIDEVHLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFL 704
Query: 632 GAS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALV 689
G+F F RP PL+ + G+ RM+ + Y +MQHA KN+ L+
Sbjct: 705 HVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQ--VLI 762
Query: 690 FVPSRKYARLTAVDLMIYSCKDSDQKSAFLL---CSAKEV-EPHVSIIQEEMLRATLRLG 745
FV SRK TA I ++ LL +++E+ +E L+ L G
Sbjct: 763 FVHSRKETAKTA--RFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYG 820
Query: 746 VGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILT------ 799
H G+ + D++ LF G I+V V ++++ W V L AH + + +
Sbjct: 821 FAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIW 880
Query: 800 ------TLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNF 853
+LQM+G AGRP D + +I+ +YY + + P+ES L D
Sbjct: 881 TELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCL 940
Query: 854 NAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL--QGVSHRHLSDHLSELVENTIS 908
NAE+ G + + +D VD+L +T+ R+ ++P Y++ + ++L ++L+ +
Sbjct: 941 NAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPEYDDDKYLVQKRADLLHSAAI 1000
Query: 909 DLEATRSIIM-EDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASAS 967
LE + ++ L + G +A+ YY+++ ++ ++ L T L V + +
Sbjct: 1001 LLEKCKLLVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSD 1060
Query: 968 EYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQ 1026
E+ +P+R E+ + +L+ + +P K NALLQ++ S + ++G L D
Sbjct: 1061 EFKHIPVREEEKVELAKLLERVPIPIRE-RLDEPAAKINALLQSYISRQRLDGFALVADM 1119
Query: 1027 EKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAK 1086
V SA R+++A+ ++ GW S+A L+++ +M+ + +W S L Q P+ ++ +
Sbjct: 1120 VYVTQSAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIR 1179
Query: 1087 RCQE 1090
R ++
Sbjct: 1180 RVEK 1183
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/1432 (39%), Positives = 803/1432 (56%), Gaps = 222/1432 (15%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH V+IKGTQ+Y ++G++ +L LD
Sbjct: 795 MLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILD 854
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 855 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIALG 914
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA WI YTYLY RM NP++YG+S + +D L + L+ LD+
Sbjct: 915 TVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDKAR 974
Query: 179 LVKYGRKSGYFQS-------------------------------------------EKIK 195
++++ ++G+F S E+IK
Sbjct: 975 MIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQIK 1034
Query: 196 M------ELAKLL-DRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ EL LL D +P +E KIN+LLQTYIS+ +L+ SL SD +
Sbjct: 1035 VREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVAQN 1094
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P +L KLE+K+
Sbjct: 1095 AARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEEKN 1154
Query: 304 FFLGK---------------------------------------PITRTVLRVELTITPD 324
+ K PITRTVLRV L ITPD
Sbjct: 1155 LTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITRTVLRVRLNITPD 1214
Query: 325 FQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFLLKKQ--YTEEDHSLNFTVPIYEPLPP 381
F W+D+VHG V E +W+ VED D+I H EYF+++K+ T+E L FT+PI+EPLP
Sbjct: 1215 FTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIPIFEPLPS 1274
Query: 382 Q----------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNY 419
Q HLILPE+ PP TELLDLQ LPVTAL +P YE LY+ +
Sbjct: 1275 QYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGHPEYEVLYK-F 1333
Query: 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
FNPIQTQ+F LY+T+ NVL+ A PTGSG
Sbjct: 1334 THFNPIQTQIFHTLYHTDCNVLLGA------------------------------PTGSG 1363
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG VVELT +
Sbjct: 1364 KTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERIEDWKVRIEEKLGKKVVELTGDV 1420
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D++ + + +I++TPEKWD +SR W+ R YVQ+VS+ IIDE+HL+G + GPVLEVIV+
Sbjct: 1421 TPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLEVIVS 1480
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
R +I+S E +R+V LST+LANA+DL +W+ + G+FNF P VRPVPLE+ IQG
Sbjct: 1481 RTNFISSHTEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHIQGFPG 1540
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
++ RM M KP + AI H+ KP L+FV SR+ RLT++DL+ + + D K +L
Sbjct: 1541 QHYCPRMARMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQ-WL 1598
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
+E+ + +++ L+ TL G+G H GL++ D++ V LF KI+V + +S++
Sbjct: 1599 KMDEREMNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTL 1658
Query: 780 CWEVPLTAHL----------ATGRKML--ILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827
W V AHL R+ + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1659 AWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIK 1718
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNY 884
K++YKKFLYE FPVES L L D+ NAEI AG I +KQDA+DY+TWT+ RL NP Y
Sbjct: 1719 KDFYKKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTY 1778
Query: 885 YNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTI 943
YNL VSH ++ +LS LVE ++ DLE + I I ED+ + P YG IASYYY+ + TI
Sbjct: 1779 YNLDNVSHDTMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTI 1838
Query: 944 ECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-PH 1002
F L ++ ++ LL +L +A EY LP+R E+++ L H NP D H
Sbjct: 1839 GMFKDQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAKHLPIE-VNPHSFDSSH 1897
Query: 1003 VKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1061
K + LLQAHFS + + D + VL A R+ QAM+DV + +GWL AL + Q
Sbjct: 1898 TKTHLLLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAALNITNLVQ 1957
Query: 1062 MVTQGMWEHDSMLLQLPH--------FTK-DLAKRCQENPGRS--IETVFDLL---EMED 1107
MV QG W HDS LL +P+ F K KR + G IE + +L+ E ++
Sbjct: 1958 MVVQGRWIHDSSLLTVPNIEVQHLYLFQKWSQQKRKSVHGGYQGPIECLPELMAACEGKE 2017
Query: 1108 DERRELLQMSDVQLLDIAR---FCNRFPNIDMSYKVQDS--------------------- 1143
D ++ S++Q I++ F +R P +++S ++
Sbjct: 2018 DVFASIVD-SELQTAHISQAWNFLSRLPILNVSLSIKGCWDDPAQPQNEVPVPCLTADTR 2076
Query: 1144 ENVR----AGGEDTTLQVVLERDLGGR--TELGPVYSNRYPKAKEEGWWLVVDDAKTNQL 1197
+N R ++ LQ+ L+R G + + R+PK K+EGW+L++ + +L
Sbjct: 2077 DNKRWIKLHADQEYVLQIHLQRTQMGYQGKQDSKAVAPRFPKVKDEGWFLILGEVDKKEL 2136
Query: 1198 LAIKRVSLQR-KSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDV 1248
+A+KR R ++ + F P GK YTL M DSY+G DQ+Y +++
Sbjct: 2137 IALKRTGYVRNRNTVSVAFYTPETPGKCIYTLYLMSDSYLGMDQQYDIYLNI 2188
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 224/865 (25%), Positives = 388/865 (44%), Gaps = 96/865 (11%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ K N IQ+ VF YNT +N+L+ A P
Sbjct: 480 FKGMKRLNRIQSIVFETAYNTNENMLICA------------------------------P 509
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRA-----VYIAPIEALAKQRYCDWERKFGKELGM 530
TG+GKT A +L ++ + GV++ VY+AP++ALA + + ++ + LG+
Sbjct: 510 TGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFSKRL-EPLGI 568
Query: 531 CVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQ 589
V ELT + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+
Sbjct: 569 TVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLVKLLILDEVHLLHED 628
Query: 590 GGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPV 648
GPVLE IVAR ++ IRI+ LS +L N D+ ++ + + G+F F RPV
Sbjct: 629 RGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRPV 688
Query: 649 PLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYS 708
PL G+ TN ++ M + Y +++ +VFV +R TA+ L
Sbjct: 689 PLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQVMVFVHARNATVRTAMALR-EK 747
Query: 709 CKDSDQKSAFLLCSAKE---VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765
K++ FL + E V + + LR G H G+ + D+ +V LF
Sbjct: 748 AKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHHAGMLRQDRSLVENLF 807
Query: 766 EAGKIKVCVMSSSMCWEVPLTAH---------LATGRKMLI---LTTLLQMMGHAGRPLL 813
G IKV V ++++ W V L AH A R + + ++Q+ G AGRP
Sbjct: 808 SNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQF 867
Query: 814 DNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLT 873
D + +I+ +Y L + P+ES L DN NAEI G + N ++AV +++
Sbjct: 868 DKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWIS 927
Query: 874 WTF---RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMDL 924
+T+ R+ NP Y G+SH+ L H +LV L+ R I E+
Sbjct: 928 YTYLYVRMRANPLVY---GISHKAYQMDPGLEKHREQLVIEVGRKLDKARMIRFEERTGF 984
Query: 925 CPS-NYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVR 983
S + G AS+YYI Y TIE F+ + +L +++ A E+ Q+ +R E E +
Sbjct: 985 FSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQIKVREEEIEELD 1044
Query: 984 RLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVD 1042
L+N A + + K N LLQ + S ++ +L D V +A+R+++A+ +
Sbjct: 1045 TLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVAQNAARIVRALFE 1104
Query: 1043 VISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDL 1102
+ W ++ + +S+++ + +W S L Q + + +E TV +
Sbjct: 1105 IALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEEKN----LTVDKM 1160
Query: 1103 LEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERD 1162
+M DE +L + L + + ++ P+I M + T+Q +
Sbjct: 1161 KDMRKDEIGHMLHHVKIG-LKVKQCVHQIPSIAM---------------EATIQPITRTV 1204
Query: 1163 LGGRTELGP--VYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAK-----LDF 1215
L R + P ++++ E WW+ V+D + + + +Q+K L F
Sbjct: 1205 LRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVF 1264
Query: 1216 AAPV-EGGKKTYTLDFMCDSYMGCD 1239
P+ E Y + + D ++G +
Sbjct: 1265 TIPIFEPLPSQYYIRAVSDRWLGAE 1289
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/1436 (39%), Positives = 793/1436 (55%), Gaps = 222/1436 (15%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE LF +GH++VLV TA LAWGVNLPAH VIIKGTQ+Y ++G++ +L LD
Sbjct: 786 MLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILD 845
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 846 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALG 905
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA WI YTYLY RM NP++YG+S + +D TL + L+ LD+
Sbjct: 906 TVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDKAR 965
Query: 179 LVKYGRKSGYFQSEKIK--------------------------------MELAKLLDRVP 206
++++ ++GYF S + + A+ D++
Sbjct: 966 MIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQIK 1025
Query: 207 IPVKE------------------SLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ +E +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1026 VREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVAQN 1085
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K+
Sbjct: 1086 AARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEEKN 1145
Query: 304 FFLGK---------------------------------------PITRTVLRVELTITPD 324
+ K PITRTVLRV L+I+PD
Sbjct: 1146 LTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVTLSISPD 1205
Query: 325 FQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TEEDHSLNFTVPIYEPLPP 381
F W+D+VHG V E +W+ VED D+I H EYFL LKKQ ++E L FT+PI+EPLP
Sbjct: 1206 FSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIPIFEPLPS 1265
Query: 382 Q----------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNY 419
Q HLILPE+ PP TELLDLQ LPVTAL +YEALY N+
Sbjct: 1266 QYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEALY-NF 1324
Query: 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
FNP+QTQ+F LY+T+ NVL+ A PTGSG
Sbjct: 1325 SHFNPVQTQIFHTLYHTDCNVLLGA------------------------------PTGSG 1354
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 1355 KTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDV 1411
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D+K + K +I++TPEKWD +SR W+ R YV+QV++ IIDE+HL+G + GPVLEVIV+
Sbjct: 1412 TPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVS 1471
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
R +I+S E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG
Sbjct: 1472 RTNFISSHTEKPVRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPG 1531
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
++ RM +M KPT+ AI H+ KP L+FV SR+ RLTA++L+ + + D K +L
Sbjct: 1532 QHYCPRMASMNKPTFQAIRSHSP-AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQ-WL 1589
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
+E+E + I++ L+ TL G+G H GL++ D++ V LF KI+V + +S++
Sbjct: 1590 NMDEREMENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTL 1649
Query: 780 CWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827
W V AHL T R + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1650 AWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIK 1709
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNY 884
K++YKKFLYE FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+Y
Sbjct: 1710 KDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSY 1769
Query: 885 YNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTI 943
YNL VSH ++ LS LVE ++ +LE + I I ED+ + P YG IASYYY+ ++T+
Sbjct: 1770 YNLSDVSHDSVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTV 1829
Query: 944 ECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-PH 1002
+ F L + + LL +L+ A EY LP+R E+ + L +NP D PH
Sbjct: 1830 KMFKERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLE-SNPHSFDSPH 1888
Query: 1003 VKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1061
KA+ LLQAH S + + D + VL A R+ QAM+DV + GWL L + Q
Sbjct: 1889 TKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWLVTVLNITSLVQ 1948
Query: 1062 MVTQGMWEHDSMLLQLPHF-TKDLAKRCQENPGR---------SIETVFDLLEMEDDERR 1111
MV QG W DS LL +PH L + +PG SIE + +L+ +
Sbjct: 1949 MVIQGRWLKDSSLLTIPHIENHHLHIFRKWSPGMKGPHAGYHGSIECLPELIHACAGKDH 2008
Query: 1112 ELLQMSDVQL-----LDIARFCNRFPNIDMSYKVQDSENVRAGGEDT------------- 1153
M + +L F + P ID+ V+ + A G D
Sbjct: 2009 VFSSMIEKELPAPKMKQAWNFLSHLPVIDVGLSVKGWWDDAAEGHDEISITTVASDKHSD 2068
Query: 1154 ------------TLQVVLER-DLG---GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQL 1197
LQV L+R LG G+ + V + R+PK+K+EGW+L++ + +L
Sbjct: 2069 NRWVRLHADQEYVLQVSLQRVSLGFHKGKQDSHAV-TPRFPKSKDEGWFLILGEVDKREL 2127
Query: 1198 LAIKRVSLQRKSR-AKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAG 1252
+A+KRV R + F P G+ YTL FM D Y+G DQ+Y + V A
Sbjct: 2128 IALKRVGYVRSHHMVSISFYTPEVPGRYIYTLYFMSDCYLGLDQQYDIHLHVTPAS 2183
Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 229/867 (26%), Positives = 396/867 (45%), Gaps = 100/867 (11%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
++ + N IQ+ VF YNT +N+L+ A P
Sbjct: 471 FKGMRRLNRIQSIVFETAYNTNENMLICA------------------------------P 500
Query: 476 TGSGKTICAEFAILRNHQRASETGVMRA-----VYIAPIEALAKQRYCDWERKFGKELGM 530
TG+GKT A +L ++ + GV++ VY+AP++ALA + + ++ + LG+
Sbjct: 501 TGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGI 559
Query: 531 CVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQ 589
V ELT + + + + Q++++TPEKWD ++R+ + Q V L I+DE+HL+
Sbjct: 560 VVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHED 619
Query: 590 GGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPV 648
GPVLE IVAR ++ IRI+ LS +L N D+ ++ + G+F F RPV
Sbjct: 620 RGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPV 679
Query: 649 PLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYS 708
PL G+ N ++ M + Y ++++ K +VFV +R TA+ L I
Sbjct: 680 PLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL-IER 738
Query: 709 CKDSDQKSAFLLCSAKE---VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765
K++ Q FL E E V + +R G H G+ + D+ +V +LF
Sbjct: 739 AKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHHAGMLRQDRNLVESLF 798
Query: 766 EAGKIKVCVMSSSMCWEVPLTAH---------LATGRKMLI---LTTLLQMMGHAGRPLL 813
G IKV V ++++ W V L AH A R + + ++Q+ G AGRP
Sbjct: 799 SNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQF 858
Query: 814 DNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLT 873
D + +I+ +Y L + P+ES L DN NAEI G + N ++AV +++
Sbjct: 859 DKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWIS 918
Query: 874 WTF---RLTQNPNYYNLQGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMD- 923
+T+ R+ NP Y G+SH+ L+ H +LV L+ R I E+
Sbjct: 919 YTYLYVRMRANPLVY---GISHKAYQIDPTLAKHREQLVIEVGRKLDKARMIRFEERTGY 975
Query: 924 LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGE-EELV 982
++ G AS+YYI Y TIE F+ + + +++ A E+ Q+ +R E EEL
Sbjct: 976 FSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELD 1035
Query: 983 RRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMV 1041
L N S A + + K N LLQ + S ++ +L D V +A+R+++A+
Sbjct: 1036 TLLSNFCELS-APGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVAQNAARIVRALF 1094
Query: 1042 DVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFD 1101
++ W ++ + +S+++ + +W S L Q + R +E TV
Sbjct: 1095 EIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEEKN----LTVDK 1150
Query: 1102 LLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLER 1161
L +M DE +L ++ L + + ++ P++ M +Q T L+V L
Sbjct: 1151 LKDMRKDEIGHILHHVNIG-LKVKQCVHQIPSVTMEASIQPITR-------TVLRVTL-- 1200
Query: 1162 DLGGRTELGPVYS--NRYPKAKEEGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKL 1213
+ P +S ++ E WW+ V+D + + L +K+ + ++++ L
Sbjct: 1201 ------SISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQL-L 1253
Query: 1214 DFAAPV-EGGKKTYTLDFMCDSYMGCD 1239
F P+ E Y + + D ++G +
Sbjct: 1254 VFTIPIFEPLPSQYYIRAVSDRWLGAE 1280
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/1435 (39%), Positives = 791/1435 (55%), Gaps = 220/1435 (15%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH VIIKGTQ+Y ++G++ +L LD
Sbjct: 786 MLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILD 845
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+ LA+ LNAEI LG
Sbjct: 846 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIALG 905
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA WI YTYLY RM NP+ YG+S + +D TL + L+ LD+
Sbjct: 906 TVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDKAQ 965
Query: 179 LVKYGRKSGYFQSEKIK--------------------------------MELAKLLDRVP 206
++++ ++GYF S + + A+ D++
Sbjct: 966 MIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIK 1025
Query: 207 IPVKE------------------SLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ +E +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1026 VREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 1085
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K
Sbjct: 1086 AARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEEKK 1145
Query: 304 FFLGK---------------------------------------PITRTVLRVELTITPD 324
+ K PITRTVLRV L+I D
Sbjct: 1146 LTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTLSIYAD 1205
Query: 325 FQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TEEDHSLNFTVPIYEPLPP 381
F W+D+VHG V E +W+ VED D+I H EYFL LKKQ ++E L FT+PI+EPLP
Sbjct: 1206 FTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPLPS 1265
Query: 382 Q----------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNY 419
Q HLILPE+ PP TELLDLQ LP+TAL +YEALY N+
Sbjct: 1266 QYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY-NF 1324
Query: 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
FNP+QTQ+F LY+T+ NVL+ A PTGSG
Sbjct: 1325 SHFNPVQTQIFHTLYHTDCNVLLGA------------------------------PTGSG 1354
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 1355 KTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDV 1411
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D+K + K +I++TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIV+
Sbjct: 1412 TPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIVS 1471
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
R +I+S E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG
Sbjct: 1472 RTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPG 1531
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
++ RM +M KP + AI H+ KP L+FV SR+ RLTA++L+ + + D K +L
Sbjct: 1532 QHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQ-WL 1589
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
+E+E ++ +++ L+ TL G+G H GL++ D++ V LF K++V + +S++
Sbjct: 1590 NMDEREMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTL 1649
Query: 780 CWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827
W V AHL T R + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1650 AWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIK 1709
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNY 884
K++YKKFLYE FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+Y
Sbjct: 1710 KDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSY 1769
Query: 885 YNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTI 943
YNL VSH ++ LS L+E ++ +LE + I I ED+ + P YG IASYYY+ ++T+
Sbjct: 1770 YNLGDVSHDSVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTV 1829
Query: 944 ECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-PH 1002
+ F L + + LL +L+ A EY LP+R E+ + L +NP D PH
Sbjct: 1830 KMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIE-SNPHSFDSPH 1888
Query: 1003 VKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1061
KA+ LLQAH S + + D + VL A R+ QAM+DV ++ GWL L + Q
Sbjct: 1889 TKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQ 1948
Query: 1062 MVTQGMWEHDSMLLQLPHFT----------KDLAKRCQENPGRSIETVFDLLEMEDDERR 1111
MV QG W DS LL LP+ K + K SIE++ +L+ +
Sbjct: 1949 MVIQGRWLKDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPELIHACGGKDH 2008
Query: 1112 ELLQMSDVQLLDIA-----RFCNRFPNIDMSYKVQDSENVRAGG---------------- 1150
M + +L F + P I++ V+ S + G
Sbjct: 2009 VFSSMVESELHAAKTKQAWNFLSHLPVINVGISVKGSWDDLVEGHNELSVSTLTADKRDD 2068
Query: 1151 ---------EDTTLQVVLERDLGGRTELGP---VYSNRYPKAKEEGWWLVVDDAKTNQLL 1198
++ LQV L+R G + P + R+PK+K+EGW+L++ + +L+
Sbjct: 2069 NKWIKLHADQEYVLQVSLQRVHFGFHKGKPESCAVTPRFPKSKDEGWFLILGEVDKRELI 2128
Query: 1199 AIKRVSLQRKSR-AKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAG 1252
A+KRV R A L F P G+ YTL FM D Y+G DQ+Y ++V +A
Sbjct: 2129 ALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMSDCYLGLDQQYDIYLNVTQAS 2183
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 237/908 (26%), Positives = 405/908 (44%), Gaps = 111/908 (12%)
Query: 373 VPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAV 432
+P EP+P L EK P + DL + A ++ K N IQ+ VF
Sbjct: 443 IPYSEPMP---LSFEEK---PVYIQDLDEIGQLA---------FKGMKRLNRIQSIVFET 487
Query: 433 LYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNH 492
YNT +N+L+ A PTG+GKT A +L
Sbjct: 488 AYNTNENMLICA------------------------------PTGAGKTNIAMLTVLHEI 517
Query: 493 QRASETGVMRA-----VYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLE 547
++ + GV++ VY+AP++ALA + + R+ + LG+ V ELT + + +
Sbjct: 518 RQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFSRRL-EPLGIIVKELTGDMQLSKSEIL 576
Query: 548 KGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVLEVIVARMRYIAS 606
+ Q++++TPEKWD ++R+ + Q V L I+DE+HL+ GPVLE IVAR
Sbjct: 577 RTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQVE 636
Query: 607 QVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVRPVPLEIQIQGVDITNFEAR 665
++ IRI+ LS +L N D+ ++ + + G+F F RPVPL G+ N +
Sbjct: 637 STQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQ 696
Query: 666 MKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725
+ M + Y +++ K +VFV +R TA+ L I K+ F +
Sbjct: 697 LNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNCGHIPFFFPTQGHD 755
Query: 726 ---VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
E V + + +R G H G+ + D+ +V LF G IKV V ++++ W
Sbjct: 756 YVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWG 815
Query: 783 VPLTAH---------LATGRKMLI---LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830
V L AH A R + + ++Q+ G AGRP D + +I+ +
Sbjct: 816 VNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSH 875
Query: 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL 887
Y L + P+ES L DN NAEI G + N ++AV ++++T+ R+ NP Y
Sbjct: 876 YLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAY-- 933
Query: 888 QGVSHRH------LSDHLSELVENTISDLEATRSIIMEDDMD-LCPSNYGMIASYYYISY 940
G+SH+ L H +LV L+ + I E+ ++ G AS+YYI Y
Sbjct: 934 -GISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKY 992
Query: 941 KTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGE-EELVRRLINHQRFSFANPKCT 999
TIE F+ + + +++ A E+ Q+ +R E EEL L N S
Sbjct: 993 NTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPG-GVE 1051
Query: 1000 DPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAME 1058
+ + K N LLQ + S M+ +L D V +A+R+++A+ ++ W ++ +
Sbjct: 1052 NSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLN 1111
Query: 1059 VSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSD 1118
+S+++ + +W S L Q + R +E TV L +M DE +L +
Sbjct: 1112 LSKVIDKRLWGWASPLRQFSILPPHILTRLEEKK----LTVDKLKDMRKDEIGHILHHVN 1167
Query: 1119 VQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYP 1178
+ L + + ++ P++ M +Q T L+V L ++++
Sbjct: 1168 IG-LKVKQCVHQIPSVMMEASIQPITR-------TVLRVTLS------IYADFTWNDQVH 1213
Query: 1179 KAKEEGWWLVVDDAKTNQL------LAIKRVSLQRKSRAKLDFAAPV-EGGKKTYTLDFM 1231
E WW+ V+D + + LA+K+ + ++++ L F P+ E Y + +
Sbjct: 1214 GTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQL-LVFTIPIFEPLPSQYYIRAV 1272
Query: 1232 CDSYMGCD 1239
D ++G +
Sbjct: 1273 SDRWLGAE 1280
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/1436 (39%), Positives = 786/1436 (54%), Gaps = 222/1436 (15%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH V+IKGTQ+Y ++G++ +L LD
Sbjct: 787 MLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILD 846
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 847 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALG 906
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA W+ YTYLY RM NP+ YG+S + +D TL + L+ LD+
Sbjct: 907 TVTNVEEAVRWMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAK 966
Query: 179 LVKYGRKSGYFQS-------------------------------------------EKIK 195
++++ ++GYF S ++IK
Sbjct: 967 MIRFEERTGYFSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIK 1026
Query: 196 M------ELAKLLDR-VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ EL LL+ + +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1027 VREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 1086
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K+
Sbjct: 1087 AARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKN 1146
Query: 304 FFLGK---------------------------------------PITRTVLRVELTITPD 324
+ K PITRTVLRV L I PD
Sbjct: 1147 LTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIHPD 1206
Query: 325 FQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TEEDHSLNFTVPIYEPLPP 381
F W+D+VHG V E +W+ VED D+I H EYFL LKKQ +E L FT+PI+EPLP
Sbjct: 1207 FSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPS 1266
Query: 382 Q----------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNY 419
Q HLILPE+ PP TELLDLQ LP+TAL +YEALY N+
Sbjct: 1267 QYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY-NF 1325
Query: 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
FNP+QTQ+F LY+T+ NVL+ A PTGSG
Sbjct: 1326 SHFNPVQTQIFHTLYHTDCNVLLGA------------------------------PTGSG 1355
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 1356 KTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDV 1412
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D+K + K +I++TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIV+
Sbjct: 1413 TPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVS 1472
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
R +I+S E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG
Sbjct: 1473 RTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPG 1532
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
++ RM +M KP + AI H+ KP L+FV SR+ RLTA++L+ + + D K +L
Sbjct: 1533 QHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQ-WL 1590
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
+E++ + +++ L+ TL G+G H GL++ D++ V LF K++V + +S++
Sbjct: 1591 NMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTL 1650
Query: 780 CWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827
W V AHL T R + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1651 AWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIK 1710
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNY 884
K++YKKFLYE FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+Y
Sbjct: 1711 KDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSY 1770
Query: 885 YNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTI 943
Y+L VS ++ LS L+ ++ +LE + I + ED+ + P G IASYYY+ +KT+
Sbjct: 1771 YSLGDVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIASYYYLKHKTV 1830
Query: 944 ECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-PH 1002
+ F L + + LL +L+ A EY LP+R E+ L NP D PH
Sbjct: 1831 KMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIEL-NPHSFDSPH 1889
Query: 1003 VKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1061
KA+ LLQAH S + + D + VL A R+ QAM+DV +S GWL L + Q
Sbjct: 1890 TKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTVLNITHLIQ 1949
Query: 1062 MVTQGMWEHDSMLLQLPHFT----------KDLAKRCQENPGRSIETVFDLLEMEDDERR 1111
MV QG W DS LL +P+ K K SIE + +L+ + +
Sbjct: 1950 MVIQGRWLKDSSLLTIPNIEQHHLHLFRKWKPPVKSSHAKCRTSIECLPELIHACEGKDH 2009
Query: 1112 ELLQMSDVQLLDIA-----RFCNRFPNIDMSYKVQDSENVRAGG---------------- 1150
M + +L F +R P I++ V+ S + G
Sbjct: 2010 VFSSMVEKELQPAKTKQAWNFLSRLPVINVGISVKGSWDDLVEGHNELSISTLTADKRDE 2069
Query: 1151 ---------EDTTLQVVLER-DLG---GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQL 1197
++ LQV L+R G G+ E V + R+PK K+EGW+L++ + +L
Sbjct: 2070 NKWIKLHADQEYVLQVSLQRVHFGLPKGKHENHAV-TPRFPKLKDEGWFLILGEVDKREL 2128
Query: 1198 LAIKRVSLQRKSR-AKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAG 1252
+A+KRV R A + F P G+ +TL M D Y+G DQ+Y ++V +A
Sbjct: 2129 MAVKRVGFVRTHHDASISFFTPETPGRYIFTLYLMSDCYLGLDQQYDIYLNVIKAN 2184
Score = 270 bits (690), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 233/888 (26%), Positives = 404/888 (45%), Gaps = 106/888 (11%)
Query: 402 LPVTALQNPSY--------EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFAR 453
+PV + P Y + ++ K N IQ+ VF YNT +N+L+ A
Sbjct: 450 MPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENMLICA--------- 500
Query: 454 LPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRN-----HQRASETGVMRAVYIAP 508
PTG+GKT A IL HQ + + VY+AP
Sbjct: 501 ---------------------PTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAP 539
Query: 509 IEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 568
++ALA + + ++ + LG+ V ELT + + + + Q++++TPEKWD ++R+
Sbjct: 540 MKALAAEMTNYFSKRL-EPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVG 598
Query: 569 RKYVQQ-VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDL 627
+ Q V L I+DE+HL+ GPVLE IVAR ++ IRI+ LS +L N D+
Sbjct: 599 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDV 658
Query: 628 GEWIGASSH-GVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKP 686
++ + + G+F F RPVPL G+ TN ++ M + Y ++++ K
Sbjct: 659 ATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQ 718
Query: 687 ALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE---EMLRATLR 743
+VFV +R TA+ L I K+S Q S FL E + +Q+ + +R
Sbjct: 719 VMVFVHARNATVRTAMSL-IERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFS 777
Query: 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH---------LATGRK 794
G H G+ + D+ +V LF G IKV V ++++ W V L AH A R
Sbjct: 778 DGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRG 837
Query: 795 MLI---LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
+ + ++Q+ G AGRP D + +I+ +Y L + P+ES L D
Sbjct: 838 SFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLAD 897
Query: 852 NFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRH------LSDHLSEL 902
N NAEI G + N ++AV ++++T+ R+ NP Y G+SH+ L H +L
Sbjct: 898 NLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAY---GISHKAYQIDPTLRKHREQL 954
Query: 903 VENTISDLEATRSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLE 961
+ L+ + I E+ ++ G AS++YI Y TIE F+ + +
Sbjct: 955 LIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFA 1014
Query: 962 VLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG- 1020
+++ A E+ Q+ +R E E + L+N+ A + + K N LLQ + S M+
Sbjct: 1015 IVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSF 1074
Query: 1021 NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHF 1080
+L D V +A+R+++A+ ++ W ++ + +S+++ + +W S L Q
Sbjct: 1075 SLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVL 1134
Query: 1081 TKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKV 1140
+ R +E TV L +M DE +L ++ L + + ++ P++ M +
Sbjct: 1135 PPHILTRLEEKN----LTVDKLKDMRKDEIGHILHHVNIG-LKVKQCVHQIPSVTMEASI 1189
Query: 1141 QDSENVRAGGEDTTLQVVLERDLGGRTELGPVYS--NRYPKAKEEGWWLVVDDAKTNQL- 1197
Q T L+V L + P +S ++ E WW+ V+D + +
Sbjct: 1190 QPITR-------TVLRVSL--------NIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1234
Query: 1198 -----LAIKRVSLQRKSRAKLDFAAPV-EGGKKTYTLDFMCDSYMGCD 1239
LA+K+ + ++++ L F P+ E Y + + D ++G +
Sbjct: 1235 HSEYFLALKKQVINKEAQL-LVFTIPIFEPLPSQYYIRAVSDRWLGAE 1281
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/1434 (38%), Positives = 778/1434 (54%), Gaps = 221/1434 (15%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR LVE+LF +GH++VLV TA LAWGVNLPAH VIIKGTQ+Y ++G++ +L LD
Sbjct: 787 MLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILD 846
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LA+ LNAEI LG
Sbjct: 847 VMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALG 906
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N +EA W+ YTYLY RM NP+ YG+S + +D TL + L+ LD+
Sbjct: 907 TVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKHREQLLIEVGQKLDKAR 966
Query: 179 LVKYGRKSGYFQS-------------------------------------------EKIK 195
++++ ++GYF S ++IK
Sbjct: 967 MIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIK 1026
Query: 196 M------ELAKLLDR-VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----MS 243
+ EL LL+ + +E KIN+LLQTYIS+ +++ SL SD +
Sbjct: 1027 VREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 1086
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 303
A R+ RALFEI L++ W + + L LSK++ KR+W +PLRQF+ +P IL +LE+K+
Sbjct: 1087 AARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKN 1146
Query: 304 FFLGK---------------------------------------PITRTVLRVELTITPD 324
+ K PITRTVLRV L I PD
Sbjct: 1147 LTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIYPD 1206
Query: 325 FQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFL-LKKQY-TEEDHSLNFTVPIYEPLPP 381
F W+D+VHG V E +W+ VED D+I H EYFL LKKQ +E L FT+PI+EPLP
Sbjct: 1207 FSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPS 1266
Query: 382 Q----------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNY 419
Q HLILPE+ PP TELLDLQ LPVTAL +YEALY N+
Sbjct: 1267 QYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCKAYEALY-NF 1325
Query: 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
FNP+QTQ+F LY+T+ NVL+ A PTGSG
Sbjct: 1326 SHFNPVQTQIFHTLYHTDCNVLLGA------------------------------PTGSG 1355
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KT+ AE AI R + + +AVYIAP++AL ++R DW+ + ++LG V+ELT +
Sbjct: 1356 KTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDV 1412
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D+K + K +I++TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIV+
Sbjct: 1413 TPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVS 1472
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
R +I+S E +RIV LST+LANA+DL +W+ G+FNF P VRPVPLE+ IQG
Sbjct: 1473 RTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPG 1532
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
++ RM +M KP + H ++P L+ +P R + +T ++L+ + + D K +L
Sbjct: 1533 QHYCPRMASMNKPAFQESHTHCP-DRPCLL-LPERMLSSMTKLELIAFLATEEDPKQ-WL 1589
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
+E+E ++ +++ L+ TL G+G H GL++ D++ V LF K++V + +S++
Sbjct: 1590 NMDEQEMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTL 1649
Query: 780 CWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827
W V AHL T R + +T +LQMMG AGRP D+ K VIL H
Sbjct: 1650 AWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIK 1709
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNY 884
K++YKKFLYE FPVES L L D+ NAEI G I +KQDA+DY+TWT+ RL NP+Y
Sbjct: 1710 KDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSY 1769
Query: 885 YNLQGVSHRHLSDHLSELVENTISDLEATRSI-IMEDDMDLCPSNYGMIASYYYISYKTI 943
YNL VS ++ LS L+ ++ +LE + I + ED+ + P G IASYYY+ +KT+
Sbjct: 1770 YNLGDVSQDAINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTV 1829
Query: 944 ECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD-PH 1002
+ F L + + LL +L+ A EY LP+R E+ L NP D PH
Sbjct: 1830 KMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIEL-NPHSFDSPH 1888
Query: 1003 VKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1061
KA+ LLQAH S + + D + VL A R+ QAM+DV +S GWL L + Q
Sbjct: 1889 TKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLIQ 1948
Query: 1062 MVTQGMWEHDSMLLQLPHFT----------KDLAKRCQENPGRSIETVFDLLEMEDDERR 1111
MV QG W DS LL +P+ K K SIE + +L+ + +
Sbjct: 1949 MVIQGRWLKDSSLLTIPNIEQHHLHLFRKWKPPVKGPHAKCRTSIECLPELIHACEGKEH 2008
Query: 1112 ELLQMSDVQLLDIA-----RFCNRFPNIDMSYKVQDSENVRAGG---------------E 1151
M + +L F + P I++ V+ S + G E
Sbjct: 2009 VFSSMVEKELQPAKTKQAWNFLSHLPVINVGISVKGSWDDSVEGHNELSISTLTADKRDE 2068
Query: 1152 DT----------TLQVVLER---DLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLL 1198
+T LQV L+R + + R+PK K+EGW+L++ + +L+
Sbjct: 2069 NTWIKLHADQQYVLQVSLQRVHFEFHKVKHESHAVTPRFPKLKDEGWFLILGEVDKRELV 2128
Query: 1199 AIKRVSLQRKSR-AKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEA 1251
A+KRV R A + F P G+ +TL M D Y+G DQ+Y ++V +A
Sbjct: 2129 AVKRVGFVRTHHEASISFFTPEAPGRYIFTLYLMSDCYLGLDQQYDIFLNVTKA 2182
Score = 269 bits (688), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 233/888 (26%), Positives = 405/888 (45%), Gaps = 106/888 (11%)
Query: 402 LPVTALQNPSY--------EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFAR 453
+PV + P Y + ++ K N IQ+ VF YNT +N+L+ A
Sbjct: 450 MPVGFEEKPVYIQDLDEVGQLAFKGMKRLNRIQSIVFDTAYNTNENMLICA--------- 500
Query: 454 LPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRA-----VYIAP 508
PTG+GKT A +L ++ GV++ VY+AP
Sbjct: 501 ---------------------PTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAP 539
Query: 509 IEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 568
++ALA + + ++ + LG+ V ELT + + + + Q++++TPEKWD ++R+
Sbjct: 540 MKALAAEMTNYFSKRL-EPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVG 598
Query: 569 RKYVQQ-VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDL 627
+ Q V L I+DE+HL+ GPVLE IVAR ++ IRI+ LS +L N D+
Sbjct: 599 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDV 658
Query: 628 GEWIGASSH-GVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKP 686
++ + + G+F F RPVPL G+ N ++ M + Y ++++ K
Sbjct: 659 ATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVLKQVKAGHQ 718
Query: 687 ALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE---EMLRATLR 743
+VFV +R TA+ L I K+S Q S FL E + +Q+ + +R
Sbjct: 719 VMVFVHARNATVRTAMSL-IERAKNSGQISCFLPTQGPEYGHALKQVQKSRNKQVRELFS 777
Query: 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH---------LATGRK 794
G H G+ + D+ +V LF G IKV V ++++ W V L AH A R
Sbjct: 778 DGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRG 837
Query: 795 MLI---LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
+ + ++Q+ G AGRP D + +I+ +Y L + P+ES L D
Sbjct: 838 SFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLAD 897
Query: 852 NFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRH------LSDHLSEL 902
N NAEI G + N ++AV ++++T+ R+ NP Y G+SH+ L H +L
Sbjct: 898 NLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAY---GISHKAYQMDPTLRKHREQL 954
Query: 903 VENTISDLEATRSIIMEDDMD-LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLE 961
+ L+ R I E+ ++ G AS+YYI Y TIE F+ + +
Sbjct: 955 LIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFA 1014
Query: 962 VLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG- 1020
+++ A E+ Q+ +R E E + L+N+ A + + K N LLQ + S M+
Sbjct: 1015 IVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSF 1074
Query: 1021 NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHF 1080
+L D V +A+R+++A+ ++ W ++ + +S+++ + +W S L Q
Sbjct: 1075 SLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVL 1134
Query: 1081 TKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKV 1140
+ R +E TV L +M DE +L ++ L + + ++ P++ M +
Sbjct: 1135 PPHILTRLEEKN----LTVDKLKDMRKDEIGHILHHVNIG-LKVKQCVHQIPSVTMEASI 1189
Query: 1141 QDSENVRAGGEDTTLQVVLERDLGGRTELGPVYS--NRYPKAKEEGWWLVVDDAKTNQL- 1197
Q T L+V L + P +S ++ E WW+ V+D + +
Sbjct: 1190 QPITR-------TVLRVSL--------NIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1234
Query: 1198 -----LAIKRVSLQRKSRAKLDFAAPV-EGGKKTYTLDFMCDSYMGCD 1239
LA+K+ + ++++ L F P+ E Y + + D ++G +
Sbjct: 1235 HSEYFLALKKQVINKEAQL-LVFTIPIFEPLPSQYYIRAVSDRWLGAE 1281
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/1424 (35%), Positives = 772/1424 (54%), Gaps = 224/1424 (15%)
Query: 3 RGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM 62
R DR +VE F +G ++VLV TA LAWGVNLPAHTVIIKGTQVYN + G + +L D+M
Sbjct: 790 RSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVM 849
Query: 63 QMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTV 122
Q+ GRAGRPQ+D+ GEG ++T +L +YLSLM+ +PIES+F++ L + LNAEIVLGTV
Sbjct: 850 QIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTV 909
Query: 123 QNAKEACNWIEYTYLYTRMLRNPVLYGL--SPEVLDITLGERITDLIHTAANVLDRNNLV 180
N EA NW+ YTYL+ RML+NP++YG+ S D L E ++I AA L++ +
Sbjct: 910 SNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKKLEQCKMT 969
Query: 181 KYGRKSGYFQSEKIKM-ELAKL------------------------------------LD 203
++ QSE + M EL ++ +
Sbjct: 970 RFDE-----QSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSEFE 1024
Query: 204 RVPIPVKESLE----------------EPSAKINVLLQTYISQLKLEGLSLTSD-----M 242
+ + +ES E + +K+ LLQ + S+ ++G SL SD
Sbjct: 1025 NITLREEESTELDKLAENQCYYELTVLDSHSKVKCLLQAFFSRANIDGFSLVSDSNYTVQ 1084
Query: 243 SAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 302
++ R+ R LFEI LK+GW +++ L L KMV ++W ++PLRQ + + + K+E++
Sbjct: 1085 NSSRILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKIEER 1144
Query: 303 D---------------FFLG------------------------KPITRTVLRVELTITP 323
D F LG +PIT ++R+ +T+ P
Sbjct: 1145 DWTPERICDMEIGELSFVLGNQLIAKTTRKIAQQFPQLDFEIQVQPITANIIRINMTLIP 1204
Query: 324 DFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFT--VPIYEPLPP 381
F W+DK+HG + FW+ V+DN+ YI H EYF+L K+ + + T +P+ P+P
Sbjct: 1205 MFSWNDKMHGDSQPFWIWVQDNESQYIFHSEYFMLTKKIYNQTEPITLTCIIPLPNPMPS 1264
Query: 382 Q----------------------HLILPEK-FPPPTELLDLQLLPVTALQNPSYEALYQN 418
Q HL+LP++ TELLDLQ LP AL+N +E+L++
Sbjct: 1265 QFFLHYISDRWLGSEGIREISFRHLVLPQQDRVVNTELLDLQPLPKEALKNKDFESLFK- 1323
Query: 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGS 478
+ FNPIQTQVF LY T +NVL+ + PTGS
Sbjct: 1324 FSHFNPIQTQVFHTLYYTNNNVLLGS------------------------------PTGS 1353
Query: 479 GKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVE 538
GKTICAE A+ + + M+ VYIAP++AL ++R DW+ KF ++LG +VELT +
Sbjct: 1354 GKTICAELAMFKVFRDEPH---MKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGD 1410
Query: 539 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 598
++ L+ I+ +TPEKWD +SR WK R YV VSL IIDE+HLIG GP+LEVIV
Sbjct: 1411 YTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGELRGPILEVIV 1470
Query: 599 ARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVD 658
+RM+ I+ Q IR+V LST++ANA DL EW+G G+FNF P RPVP+E+ IQG
Sbjct: 1471 SRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQ 1530
Query: 659 ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718
N+ RM+ M KP++ AI ++ +KP L+FV SR+ RLTA+DL+ Y D+D
Sbjct: 1531 GKNYCPRMQTMNKPSFAAIATYSP-KKPVLIFVSSRRQTRLTALDLISYLVVDNDPLQ-- 1587
Query: 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
+ ++EP ++ ++++ LR TL G+G H GLN D+ +V +LF KI++ + +S+
Sbjct: 1588 WIQKGFDIEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTST 1647
Query: 779 MCWEVPLTAHLA-----------TGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
+ W V L AHL T R + LT +LQM+G AGRP D K +++ H P
Sbjct: 1648 LAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEP 1707
Query: 827 HKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPN 883
K++YKKFLY+ FPVESHL FLHD+ NAEIV+G I++KQ A++YL TF RL +P+
Sbjct: 1708 KKQFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPS 1767
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTI 943
YY L+ S ++ +LS+L+++T++DLE + I + + ++ P + G IAS+YY++YKT+
Sbjct: 1768 YYGLEDNSVEAVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMSMGKIASFYYLNYKTV 1827
Query: 944 ECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHV 1003
+ FS ++ + +K LL VL+ A+EY++ P+R EE L + L + N + D H
Sbjct: 1828 QNFSDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGNYE--DSHT 1885
Query: 1004 KANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1062
K + LLQAHF + + D + L R+LQAM+DV G+ + A+ + + QM
Sbjct: 1886 KVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQM 1945
Query: 1063 VTQGMWEHDSMLLQLPHFTKDLAKRCQEN----PGRSIETVFDLLEMEDDERRELLQ--- 1115
+ QG W++DS L+ LPH KD A N G I + D+L++ D+ L
Sbjct: 1946 LVQGRWDYDSSLMTLPHINKDFADFLSSNLILSNGEQISNLSDMLKIPRDKIHLSLTNIG 2005
Query: 1116 MSDVQLLDIARFCNRFPNIDMSYKV-----------------------------QDSENV 1146
+SD Q+ + + P + + Y + +++++
Sbjct: 2006 LSDSQIKETLNVIDHLPKVKIEYFINTNNNSNNNDDNNNENNNNNNKKNNNNNNNNNKSI 2065
Query: 1147 RAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQ 1206
G++ +++ + R+ + G ++ Y K K+EGW +V+ D K Q++ KRV
Sbjct: 2066 VYSGQEFNIKIKVTRE-NKKFSNGHAFAPLYSKDKDEGWIMVLTDEK-EQMIGFKRVPQM 2123
Query: 1207 RKSRAKLDFAAPVE--GGKKTYTLDFMCDSYMGCDQEYSFTVDV 1248
+ +F P Y + D+YMG D ++F V +
Sbjct: 2124 ISNSVTANFKIPKAPFQSSTNYNVKLYSDTYMGLDYFHTFQVPI 2167
Score = 276 bits (706), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 216/764 (28%), Positives = 362/764 (47%), Gaps = 85/764 (11%)
Query: 414 ALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQL 473
A + + K N IQ++VF Y + +N+L++A
Sbjct: 475 AAFGSIKKLNRIQSRVFESAYKSNENILISA----------------------------- 505
Query: 474 APTGSGKTICAEFAILRNHQRAS--------ETGVMRAVYIAPIEALAKQRYCDWERKFG 525
PTG+GKT A IL H+ S + + +YIAP++ALA + +
Sbjct: 506 -PTGAGKTNIALLTIL--HEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKFSNSL- 561
Query: 526 KELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 585
K LG+ ELT + + K L++ QII++TPEKWD ++R+ + V L IIDE+HL
Sbjct: 562 KYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEIHL 621
Query: 586 IGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGV 645
+ + GPVLE IVAR + IRIV LS +L N KD+ +I A + G F
Sbjct: 622 LHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFIRAPASGTHFFDSSY 681
Query: 646 RPVPLEIQIQGV-DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDL 704
RPVPL GV D M + Y + + K ++FV SRK + + ++
Sbjct: 682 RPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQVMIFVHSRK-DTVKSAEI 740
Query: 705 MIYSCKD-----SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQE 759
+ K+ S+++ +F + KE E ++ + +R+ + G+ H GL +SD+
Sbjct: 741 LSDMAKEKHFRFSNEEPSF--GAKKEFEK----VKSKEIRSLFQHGISVHHAGLLRSDRN 794
Query: 760 VVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT------------GRKMLILTTLLQMMGH 807
VV F G IKV V ++++ W V L AH G L ++ ++Q+ G
Sbjct: 795 VVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGR 854
Query: 808 AGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQD 867
AGRP D S + +L ++Y + + P+ES L D+ NAEIV G + N +
Sbjct: 855 AGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNVNE 914
Query: 868 AVDYLTWTF---RLTQNPNYYNL---QGVSHRHLSDHLSELVENTISDLEATR-SIIMED 920
AV++L++T+ R+ QNP Y + Q L + E++ LE + + E
Sbjct: 915 AVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKKLEQCKMTRFDEQ 974
Query: 921 DMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEE 980
+L + G IAS+YYI + +IE F+ L + +L +L+++SE+ + +R E
Sbjct: 975 SENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSEFENITLREEEST 1034
Query: 981 LVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQA 1039
+ +L +Q + D H K LLQA FS +++G +L D + ++SR+L+
Sbjct: 1035 ELDKLAENQ--CYYELTVLDSHSKVKCLLQAFFSRANIDGFSLVSDSNYTVQNSSRILRG 1092
Query: 1040 MVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETV 1099
+ ++ GW +++ +++ +MV +W +S L Q + D ++ +E + E +
Sbjct: 1093 LFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKIEERDW-TPERI 1151
Query: 1100 FDLLEMEDDERRELLQMSDVQLL--DIARFCNRFPNIDMSYKVQ 1141
D+ E EL + QL+ + +FP +D +VQ
Sbjct: 1152 CDM------EIGELSFVLGNQLIAKTTRKIAQQFPQLDFEIQVQ 1189
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1184 (39%), Positives = 660/1184 (55%), Gaps = 191/1184 (16%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR L+E +F G+++VLV TA LAWGVNLPAH VIIKGT +Y+ ++G +L LD
Sbjct: 384 MLRQDRSLMESMFSRGYLKVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRGTLVDLGILD 443
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
+MQ+ GRAGRPQ+D YGEG IIT H +L +YL+L+ QQ PIESQF LA+ LNAEI LG
Sbjct: 444 VMQIFGRAGRPQFDKYGEGTIITTHDKLSHYLTLLTQQNPIESQFQQSLADNLNAEIALG 503
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV--LDITLGERITDLIHTAANVLDRNN 178
TV N EA W+ YTYLY RM NP+ YG++ + +D L +L+ + LD+
Sbjct: 504 TVTNVDEAVRWLSYTYLYVRMRANPLAYGINHKAYQMDPQLELYRKELVVESGRKLDKAR 563
Query: 179 LVKYGRKSGYFQSEKIKMELAKLL--------------------DRVPIPVKESLEEPSA 218
++++ ++GYF S + + D + I V ++ E
Sbjct: 564 MIRFDERTGYFASTDLGRTASHFYIKYNTIESFNELFNAQNTEADVLSI-VSKAEEFEQI 622
Query: 219 KINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRM 278
K+ V + + ++ L + +A R+ RALFE+ L++ W + + L L K++ KR+
Sbjct: 623 KVRVQEEDADGKSSVQILCGSHHTNAARIMRALFEMALRKRWPAMTYRLLNLCKVMDKRL 682
Query: 279 WSVQTPLRQFNGIPNEILMKLEKKDFFLGK------------------------------ 308
W PLRQFN +P L ++E K+ + K
Sbjct: 683 WGWAHPLRQFNTLPASALARMEDKNLTIDKLRDMGKDEIGHMLHHVNIGLKVKQCVHQIP 742
Query: 309 ---------PITRTVLRVELTITPDFQWDDKVHGYV-ELFWVIVEDNDGDYILHHEYFLL 358
PITRTVLRV L+ITPDF+W+D+VHG V E +W+ VED D+I H EYFLL
Sbjct: 743 AILLESSIQPITRTVLRVRLSITPDFRWNDQVHGSVGEPWWLWVEDPINDHIYHSEYFLL 802
Query: 359 KKQ--YTEEDHSLNFTVPIYEPLPPQ----------------------HLILPEKFPPPT 394
+K+ + E + FT+PI+EP+P Q HLILPE+ PP T
Sbjct: 803 QKKQVVSGEPQQVVFTIPIFEPMPSQYYIRAVSDRWLGSEAVCIINFQHLILPERHPPHT 862
Query: 395 ELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARL 454
ELLDLQ LP+TAL N YE+LY+ + +NPIQTQ+F LY+T+ NVL+
Sbjct: 863 ELLDLQPLPITALGNREYESLYK-FTHYNPIQTQIFHTLYHTDTNVLLG----------- 910
Query: 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514
APTGSGKTI AE AI R + V VYIAP++AL +
Sbjct: 911 -------------------APTGSGKTIAAEMAIFRVFNMYPTSKV---VYIAPLKALVR 948
Query: 515 QRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ 574
+R DW+ + ++LG VVELT + D++ + + +I++TPEKWD +SR W+ R YVQ+
Sbjct: 949 ERIEDWKIRIEEKLGRKVVELTGDNTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQK 1008
Query: 575 VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGAS 634
V++ IIDE+HL+G GPVLEVIV+R +I+S +R+V LST+LANA+DL +W+G
Sbjct: 1009 VAILIIDEIHLLGEDRGPVLEVIVSRTNFISSHTSKTVRVVGLSTALANARDLADWLGIG 1068
Query: 635 SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSR 694
G+FNF P VRPVPLE+ IQG ++ RM M KP + AI H+ KP L+FV SR
Sbjct: 1069 QVGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMATMNKPVFQAIRTHSP-AKPVLIFVSSR 1127
Query: 695 KYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLN 754
+ RLTA+DL+ + + D K +L +E+ ++ I+E L+ TL G+G H GL+
Sbjct: 1128 RQTRLTALDLIAFLATEDDPKQ-WLHQDEREMTDIIATIRESNLKLTLAFGIGMHHAGLH 1186
Query: 755 KSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL----------ATGRKML--ILTTLL 802
+ D++ V LF KI+V + +S++ W V AHL R+ + +T +L
Sbjct: 1187 ERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVL 1246
Query: 803 QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVI 862
QMMG AGRP D+ K VIL H K++YKKFLYE FPVES L L D+ NAEI AG +
Sbjct: 1247 QMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLSVLSDHLNAEIAAGTV 1306
Query: 863 ENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSI-IM 918
+KQDA+DY+TWT+ RL NP+YYNL +SH ++ +LS LVE ++ DLE + + I
Sbjct: 1307 TSKQDAMDYITWTYFFRRLVMNPSYYNLDDISHETINKYLSNLVERSLRDLECSYCMEIQ 1366
Query: 919 EDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGE 978
+D+ + P YG I+SYYY+ ++TI F L + + LL +L+ LP
Sbjct: 1367 QDEQTIEPLTYGRISSYYYLKHQTIRMFKERLKPELPVHELLAILS-------LP----- 1414
Query: 979 EELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQ 1038
C+D D + VL +A R+ Q
Sbjct: 1415 -------------------CSD---------------------YGTDTKTVLDNAIRICQ 1434
Query: 1039 AMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTK 1082
AM+DV+++ GWL AL + QM+ Q W HDS LL LPH K
Sbjct: 1435 AMLDVVANEGWLVSALSLCNLVQMIIQARWLHDSSLLTLPHIQK 1478
Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 209/868 (24%), Positives = 378/868 (43%), Gaps = 131/868 (15%)
Query: 413 EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQ 472
+ +++ K N IQ+ VF YNT +N+L+ A
Sbjct: 65 QLVFKGMKRLNRIQSIVFETAYNTNENLLICA---------------------------- 96
Query: 473 LAPTGSGKTICAEFAILRN-HQRASETGVMRA-----VYIAPIEALAKQRYCDWERKFGK 526
PTG+GKT A IL Q GV+R VY+AP++ALA + + ++ +
Sbjct: 97 --PTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAAEMTNYFSKRL-E 153
Query: 527 ELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQV-SLFIIDELHL 585
LG+ V ELT + + + + Q++++TPEKWD ++R+ + QV L I+DE+HL
Sbjct: 154 PLGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQVVRLLILDEVHL 213
Query: 586 IGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPG 644
+ GPVLE +VAR ++ IRI+ LS +L N D+ ++ + G+F F
Sbjct: 214 LHEDRGPVLESLVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPFIGLFYFDSR 273
Query: 645 VRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDL 704
RPVPL G+ TN ++ M + Y +++ K +VFV +R TA+ L
Sbjct: 274 FRPVPLGQSFVGIKTTNKVQQLHDMEEVCYEKVLKQIKAGHQVMVFVHARNSTVRTAMSL 333
Query: 705 MIYSCKDSDQKSAFLL---CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVV 761
I K+ + S F + + E + + + +R G G H G+ + D+ ++
Sbjct: 334 -IEMAKNRGELSFFQVDQGADYGQCEKQIQRSRNKQMREMFPDGFGIHHAGMLRQDRSLM 392
Query: 762 STLFEAGKIKVCVMSSSMCWEVPLTAHLA---------TGRKMLI---LTTLLQMMGHAG 809
++F G +KV V ++++ W V L AH R L+ + ++Q+ G AG
Sbjct: 393 ESMFSRGYLKVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRGTLVDLGILDVMQIFGRAG 452
Query: 810 RPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAV 869
RP D + I+ +Y L + P+ES L DN NAEI G + N +AV
Sbjct: 453 RPQFDKYGEGTIITTHDKLSHYLTLLTQQNPIESQFQQSLADNLNAEIALGTVTNVDEAV 512
Query: 870 DYLTWTF---RLTQNPNYYNLQGVSHR------HLSDHLSELVENTISDLEATRSIIMED 920
+L++T+ R+ NP Y G++H+ L + ELV + L+ R I ++
Sbjct: 513 RWLSYTYLYVRMRANPLAY---GINHKAYQMDPQLELYRKELVVESGRKLDKARMIRFDE 569
Query: 921 DMD-LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEE 979
++ G AS++YI Y TIE F+ ++ +L +++ A E+ Q+ +R EE
Sbjct: 570 RTGYFASTDLGRTASHFYIKYNTIESFNELFNAQNTEADVLSIVSKAEEFEQIKVRVQEE 629
Query: 980 ELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQA 1039
+ D L +H + +A+R+++A
Sbjct: 630 D------------------ADGKSSVQILCGSHHT-----------------NAARIMRA 654
Query: 1040 MVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETV 1099
+ ++ W ++ + + +++ + +W L Q R ++ T+
Sbjct: 655 LFEMALRKRWPAMTYRLLNLCKVMDKRLWGWAHPLRQFNTLPASALARMEDKN----LTI 710
Query: 1100 FDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVL 1159
L +M DE +L ++ L + + ++ P I + ++++Q +
Sbjct: 711 DKLRDMGKDEIGHMLHHVNIG-LKVKQCVHQIPAILL---------------ESSIQPIT 754
Query: 1160 ERDLGGRTELGPVY--SNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRA-----K 1212
L R + P + +++ + E WWL V+D + + + LQ+K +
Sbjct: 755 RTVLRVRLSITPDFRWNDQVHGSVGEPWWLWVEDPINDHIYHSEYFLLQKKQVVSGEPQQ 814
Query: 1213 LDFAAPV-EGGKKTYTLDFMCDSYMGCD 1239
+ F P+ E Y + + D ++G +
Sbjct: 815 VVFTIPIFEPMPSQYYIRAVSDRWLGSE 842
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/1408 (35%), Positives = 761/1408 (54%), Gaps = 211/1408 (14%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R DR L EDLF DG +QVLV TA LAWGVNLPAHTVIIKGT VY+PEKG+W +LSP D
Sbjct: 808 LTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQD 867
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++QMLGRAGRP+YD++GEGIIIT S +QYYLS++NQQLPIESQFVSKL + LNAE+V G
Sbjct: 868 VLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAG 927
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
++ +A NW+ YTYLY RML +P+LY + D L + L+H+A +L LV
Sbjct: 928 NIKCRNDAVNWLAYTYLYVRMLASPMLYKVPDISSDGQLKKFRESLVHSALCILKEQELV 987
Query: 181 KYGRKSGYFQSEKI---------------------------------------------- 194
Y ++ ++ +
Sbjct: 988 LYDAENDVIEATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVR 1047
Query: 195 ---KMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGR 246
K EL +LL++ PIP++E +++P AK+NVLLQ+Y SQLK EG +L SD+ +AGR
Sbjct: 1048 YEEKRELKQLLEKAPIPIREDIDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGR 1107
Query: 247 LSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFL 306
L RA+FEI LKRGW L L K T +MW PLRQF P E++ +LE
Sbjct: 1108 LLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLEASTVPW 1167
Query: 307 G----------------------------------------KPITRTVLRVELTITPDFQ 326
G +PITR+V+R + I D+
Sbjct: 1168 GDYLQLETPAEVGRAIRSEKYGKQVYDLLKRFPKMSVTCNAQPITRSVMRFNIEIIADWI 1227
Query: 327 WDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYE----PLPPQ 382
WD VHG +E F +++ED DGD IL+++ + + +L+FT + + LPP
Sbjct: 1228 WDMNVHGSLEPFLLMLEDTDGDSILYYDVLFITPDIVGHEFTLSFTYELKQHNQNNLPPN 1287
Query: 383 HLI----------------------LPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYK 420
+ LP+KFPPPT LL+ + + L N + +++ +K
Sbjct: 1288 FFLTLISENWWHSEFEIPVSFNGFKLPKKFPPPTPLLENISISTSELGNDDFSEVFE-FK 1346
Query: 421 LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGK 480
FN IQ+QVF LYN+ D+V V + G+GK
Sbjct: 1347 TFNKIQSQVFESLYNSNDSVFVGS------------------------------GKGTGK 1376
Query: 481 TICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV-ELTVET 539
T AE A+L NH R ++ RAVYI P DW ++F G ++ +L +
Sbjct: 1377 TAMAELALL-NHWRQNKG---RAVYINPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDP 1432
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIV 598
+++LKLL K ++++TP +++ LSRRW+QRK +Q + L I D+ H I G G V E ++
Sbjct: 1433 SLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMIYDDAHEISQGVYGAVYETLI 1492
Query: 599 ARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVD 658
+RM +IA+Q+E KIR V LS LANA+D GEW G + ++NF P R PLEI IQ
Sbjct: 1493 SRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTKSNIYNFSPSERIEPLEINIQSFK 1552
Query: 659 ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718
+ +M + + A A N + VF+PSRK A M +S +
Sbjct: 1553 DVEHISFNFSMLQMAFEASAAAAGNRNSSSVFLPSRKDCMEVASAFMKFS---KAIEWDM 1609
Query: 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
L +++ P++ + + LRA L+ GVG L++G+ +D+ +V L+E G + V ++S
Sbjct: 1610 LNVEEEQIVPYIEKLTDGHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKD 1669
Query: 779 ----MCWE---VPLTAHLATGRKM----LILTTLLQMMGHA-GRPLLDNSEKCVILCHAP 826
C + L +L G + + LL+M+G A G + + K +IL
Sbjct: 1670 CSAFACKTDEVIILGTNLYDGAEHKYMPYTINELLEMVGLASGNDSM--AGKVLILTSHN 1727
Query: 827 HKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPN 883
K YYKKFL E P ES+L + +HD N EI +I++KQD VD+ T+++ R+ NP+
Sbjct: 1728 MKAYYKKFLIEPLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPS 1787
Query: 884 YYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMD-----------------LCP 926
YY ++ S +S LS LVE ++DL S I DD + +
Sbjct: 1788 YYGVRDTSPHGISVFLSNLVETCLNDL-VESSFIEIDDTEAEVTAEVNGGDDEATEIIST 1846
Query: 927 SNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLI 986
+ G+IAS+Y +S+ TI+ F SSL++ + +K +L VL++A E+ +P+R G+ L+ +L
Sbjct: 1847 LSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKL- 1905
Query: 987 NHQRFSFANPKCTDP---HVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDV 1043
+R P+ T K LLQA+FS + + + D + +L L+ +VD+
Sbjct: 1906 -SKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDI 1964
Query: 1044 ISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLL 1103
+S+NG+L+ A AM+++QM+ QG+W+ D+ L Q+PHF + ++C+E ++ETV+D++
Sbjct: 1965 LSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKE---INVETVYDIM 2020
Query: 1104 EMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAG-GEDTTLQVVLERD 1162
+ED+ER E+L ++D QL +A F N +PN++++Y + +S+++ +G + T+Q L RD
Sbjct: 2021 ALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQ--LTRD 2078
Query: 1163 LGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRA-KLDFAAPVEG 1221
+ E V S +YP K E WWLV+ + +L AIK+V+L ++++ +L+F P
Sbjct: 2079 V--EPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPT-S 2135
Query: 1222 GKKTYTLDFMCDSYMGCDQEYSFTVDVK 1249
GK T+ +CDSY+ D+E SF ++VK
Sbjct: 2136 GKHNLTIWCVCDSYLDADKELSFEINVK 2163
Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 203/729 (27%), Positives = 354/729 (48%), Gaps = 63/729 (8%)
Query: 391 PPPTE-LLDLQLLPVTALQNPSYEALYQNYKL-FNPIQTQVFAVLYNTEDNVLVAALSRK 448
P P++ ++D +L +T+L + EA + NPIQ++VF + + N+L+ A
Sbjct: 466 PAPSKPVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICA---- 521
Query: 449 LMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILR--NHQRASET-----GVM 501
PTGSGKT A +L+ +H +T
Sbjct: 522 --------------------------PTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAF 555
Query: 502 RAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDA 561
+ VYIAP++AL +++ +++R+ LG+ V ELT ++ + K +++ Q+++STPEKWD
Sbjct: 556 KIVYIAPLKALVQEQVREFQRRLAF-LGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDI 614
Query: 562 LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSL 621
+R V+ V L IIDE+HL+ GPVLE IVAR + + + RI+ LS +L
Sbjct: 615 TTRNSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATL 674
Query: 622 ANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA 681
N +D+G ++ G+F F RP PL Q G+ N ++KAM Y +++
Sbjct: 675 PNYEDVGRFLRVPKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESI 734
Query: 682 KNEKPALVFVPSRKYARLTAVDLM-IYSCKDSDQKSAFLLCSAKEV-EPHVSIIQEEMLR 739
+VFV SRK TA L ++ ++ K +K++ + + + + LR
Sbjct: 735 NEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLR 794
Query: 740 ATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILT 799
+ G+G H GL +SD+ + LF G ++V V ++++ W V L AH + + +
Sbjct: 795 KLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYS 854
Query: 800 ------------TLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHH 847
+LQM+G AGRP D + +I+ + +YY L + P+ES
Sbjct: 855 PEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVS 914
Query: 848 FLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHR-HLSDHLSELV 903
L DN NAE+VAG I+ + DAV++L +T+ R+ +P Y + +S L LV
Sbjct: 915 KLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVPDISSDGQLKKFRESLV 974
Query: 904 ENTISDLEATRSIIMEDDMDLC-PSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEV 962
+ + L+ ++ + + D+ ++ G IAS +YI++ +++ ++ L T L +
Sbjct: 975 HSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRI 1034
Query: 963 LASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNL 1022
+ + E+ + +R E+ +++L+ DP K N LLQ++FS EG
Sbjct: 1035 FSMSEEFKYVSVRYEEKRELKQLLEKAPIPIRE-DIDDPLAKVNVLLQSYFSQLKFEG-F 1092
Query: 1023 KLDQEKVLL--SASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHF 1080
L+ + V + +A RLL+AM ++ GW + + + + T MW + L Q
Sbjct: 1093 ALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTC 1152
Query: 1081 TKDLAKRCQ 1089
++ KR +
Sbjct: 1153 PVEVIKRLE 1161
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/1349 (35%), Positives = 709/1349 (52%), Gaps = 201/1349 (14%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR L E LF G +++L TA LAWGVNLPA+ V+IKGTQ+Y+P+KG++ +L LD
Sbjct: 595 MLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLD 654
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
++Q+ GRAGRPQ++S IIT H +L +Y+S++ QQ PIES+F +L + LNAE+ LG
Sbjct: 655 VLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLG 714
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
TV N EA +W+ YTYLY RM RNP++YG++ + L D LG + +L+ AA L N
Sbjct: 715 TVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRELVSVAAGRLADNQ 774
Query: 179 LVKYGRKSGYFQSE-----------------------KIKMELAKLL------------- 202
++ Y +K+GY + K KM A ++
Sbjct: 775 MIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADIIALLSQCSEFSQIK 834
Query: 203 --------------DRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS----- 243
+ P +++S+ S K+NV+LQ+YIS+ +E +LTSD +
Sbjct: 835 SRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFTLTSDTNYVAQN 894
Query: 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK- 302
AGR++RALFEI + R W+ A L L+K + +R WS + PL QF+ +P+++ +K+E +
Sbjct: 895 AGRITRALFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEHPLLQFD-LPHDLAVKVENQC 952
Query: 303 ---------DFFLGK-------------------------------PITRTVLRVELTIT 322
D G+ P+T+ VLR+ L IT
Sbjct: 953 GSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLLPLTKNVLRLVLNIT 1012
Query: 323 PDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ 382
P+F WD + HG ++FW+ VED++G ILHHE LL K+ H L+FT+P+ PLP Q
Sbjct: 1013 PNFNWDMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHLLSFTIPVSNPLPSQ 1072
Query: 383 ----------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEAL-YQNY 419
+++ + P TELLDLQ LP+TAL +P E + + +
Sbjct: 1073 LYIIAVSDKWLGAETVTPVSLSNVVFHDDSNPITELLDLQPLPITALHDPVLEGICAKRF 1132
Query: 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
FN +QTQ F +Y+T+ N+ V A PTGSG
Sbjct: 1133 SFFNAVQTQFFHTIYHTDTNIFVGA------------------------------PTGSG 1162
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KT+ AE A R ++ V VYIAP++AL K+R DW + + +G+ ++ELT +T
Sbjct: 1163 KTMAAELATWRALHNYPKSKV---VYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDT 1219
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D+K + III+TPEKWD ++R WK RKYVQ VSL I+DE+HL+G GPVLE+IV+
Sbjct: 1220 NPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVS 1279
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659
RM Y+ASQ K+R++ LST++ANA DL W+ G+FNF VRPVPLEI I G
Sbjct: 1280 RMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRD-GLFNFRHSVRPVPLEIYIDGFPG 1338
Query: 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719
+ RM +M KP + AI H+ + P L+FV SR+ RLTA DL+ + C D FL
Sbjct: 1339 RAYCPRMMSMNKPAFQAIKTHSPTQ-PVLIFVSSRRQTRLTAKDLIAF-CGLEDNPRRFL 1396
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
+E+E VS ++++ L+ L G+ H GL ++D+++ LF K+++ + +S++
Sbjct: 1397 YMDEEELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTL 1456
Query: 780 CWEVPLTAHLAT------------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827
W V AHL G K + LT +LQM+G AGRP DNS I
Sbjct: 1457 AWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIK 1516
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNY 884
K +YK FL+ FPVES+LH L ++ NAEI G I+ Q A+D+LT T+ R+ QNP Y
Sbjct: 1517 KSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVY 1576
Query: 885 YNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIE 944
Y G + + +LS+LV ++LE + I ++ P+ G I SYYY+ + TI
Sbjct: 1577 YGADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLFHTTIR 1636
Query: 945 CFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFA--NPKCTDPH 1002
F +T + L++LA ASE+ L IR E+ + + ++S A N D H
Sbjct: 1637 NFVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPMVDAH 1696
Query: 1003 VKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1061
VKA L QAH + + + D VL R++Q+ +DV + G+ + L + + Q
Sbjct: 1697 VKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQ 1756
Query: 1062 MVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQM--SDV 1119
+ Q + + LP K ++ L + ++ EL QM +D
Sbjct: 1757 CLKQACYPSEIYRASLPGLNASSEKEARDY----------LNKFAGNKTDELYQMLCNDP 1806
Query: 1120 QLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGP---VYSNR 1176
+ DI N +SY + E ++ + L + R L L P +++
Sbjct: 1807 NVFDIESLVNSL----ISYPKMNIEVSQSSSDKLLLYL---RRLN--QPLNPDFYIFAPL 1857
Query: 1177 YPKAKEEGWWLVVDDAKTNQLLAIKRVSL 1205
+PK + EG+++++ D++T +L AI+R S
Sbjct: 1858 FPKPQSEGFFVLIIDSETQELFAIRRASF 1886
Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 193/740 (26%), Positives = 339/740 (45%), Gaps = 101/740 (13%)
Query: 416 YQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAP 475
+ +Y+ N IQ+ V+ + Y T +N+L+ AP
Sbjct: 272 FLSYQTLNRIQSLVYPIAYKTNENMLIC------------------------------AP 301
Query: 476 TGSGKTICAEFAILRNHQRASETGVM--------------RAVYIAPIEALAKQRYCDWE 521
TG+GKT A A+L+ E+ + + VYIAP++ALA +
Sbjct: 302 TGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVV---- 357
Query: 522 RKFGKE---LGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRW-KQRKYVQQVSL 577
K GK LG+ ELT + + + + QI+++TPEKWD ++R+ + ++V L
Sbjct: 358 EKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRL 417
Query: 578 FIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH- 636
IIDE+H++ + G V+E +VAR + + + IRIV LS +L N D+ +++G + +
Sbjct: 418 VIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYK 477
Query: 637 GVFNFPPGVRPVPLEIQIQG-----------VDITNFEARMKAMTKPTYTAIMQHAKNEK 685
G+F F RP P+E G +D F+ +K + + I H++ E
Sbjct: 478 GLFYFSSAFRPCPIEQHFIGAKGSPKIVNSNIDEACFDKVLKLIQEGHQVMIFVHSRKET 537
Query: 686 PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLG 745
++ DL+ D+ Q + L + VS + + L+ +
Sbjct: 538 INSAKKLREQFFHEGEADLL-----DNSQHEKYSLA-----QRDVSKSKNKELKELFKYS 587
Query: 746 VGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH--LATGRKM-------- 795
+G + G+ +SD+ + LF G +K+ ++++ W V L A+ L G ++
Sbjct: 588 MGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSF 647
Query: 796 --LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNF 853
L + +LQ+ G AGRP ++S I+ +Y + + P+ES L DN
Sbjct: 648 VDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRLVDNL 707
Query: 854 NAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNL---QGVSHRHLSDHLSELVENTI 907
NAE+ G + N +AV +L +T+ R+ +NP Y + + V L ELV
Sbjct: 708 NAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRELVSVAA 767
Query: 908 SDLEATRSIIM-EDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASA 966
L + I+ + + L P + G IAS YYI+Y+T+ ++ L SK ++ +L+
Sbjct: 768 GRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADIIALLSQC 827
Query: 967 SEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLD 1025
SE++Q+ R E + L+ + ++ K N +LQ++ S H+E L D
Sbjct: 828 SEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFTLTSD 887
Query: 1026 QEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQ--LPHFTKD 1083
V +A R+ +A+ ++ S W S A + +++ + + W + LLQ LPH D
Sbjct: 888 TNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEHPLLQFDLPH---D 943
Query: 1084 LAKRCQENPGR-SIETVFDL 1102
LA + + G S+E + D+
Sbjct: 944 LAVKVENQCGSLSLEELSDM 963
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1368 (34%), Positives = 705/1368 (51%), Gaps = 216/1368 (15%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M R DR L E +F DG ++VL TA LAWGVNLPA VIIKGTQVY+ +KG + +L D
Sbjct: 602 MARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISD 661
Query: 61 IMQMLGRAGRPQYDSY-GEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVL 119
++Q+ GR GRP + S G GI+ T + L +Y+SL+ QQ PIES+F SKL + LNAEI L
Sbjct: 662 VIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISL 721
Query: 120 GTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRN 177
G+V N EA W+ YTY++ RM +NP YG+ E + D L ER +I AA L
Sbjct: 722 GSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHAL 781
Query: 178 NLVKY------------GRKSG--YFQSEKIKM--------------------------- 196
++ + GR S Y +E +++
Sbjct: 782 QMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGI 841
Query: 197 --------ELAKLLDR-VPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSD-----M 242
EL +L D V + L+ P K NVLLQ YISQ ++ +L+SD
Sbjct: 842 KFREEESKELKRLSDESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQ 901
Query: 243 SAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEI------- 295
++ R+ RALF I + R W + + L + K + KR+W+ PL QF+ +P I
Sbjct: 902 NSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDHPLCQFD-LPENIIRRIRDT 960
Query: 296 ------LMKLEKKDFFLGK----------------------------PITRTVLRVELTI 321
L++LE + LG+ PIT V+R+ + +
Sbjct: 961 KPSMEHLLELEADE--LGELVHNKKAGSRLYKILSRFPKINIEAEIFPITTNVMRIHIAL 1018
Query: 322 TPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPP 381
PDF WD ++HG + FWV VE++D ILH E F+L ++ H ++F +P+ +PLPP
Sbjct: 1019 GPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNRRQLNNQHEMDFMIPLSDPLPP 1078
Query: 382 Q----------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNY 419
Q HLI P T+LL L+ LP +ALQNP E++Y +
Sbjct: 1079 QVVVKVVSDTWIGCESTHAISFQHLIRPFNETLQTKLLKLRPLPTSALQNPLIESIYP-F 1137
Query: 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSG 479
K FNP+QT F LYNT +N V + PTGSG
Sbjct: 1138 KYFNPMQTMTFYTLYNTNENAFVGS------------------------------PTGSG 1167
Query: 480 KTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVET 539
KTI AE AI H + G + VYIAP++AL ++R DW +K G VVELT ++
Sbjct: 1168 KTIVAELAIW--HAFKTFPG-KKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELTGDS 1224
Query: 540 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVA 599
D K + I+I+TPEK+D +SR W+ RK+VQ VSL I+DE+HL+ GP+LE+IV+
Sbjct: 1225 LPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASDRGPILEMIVS 1284
Query: 600 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV-D 658
RM YI+SQ + +R++ +ST+++NA D+ W+G HG++NFP VRPVPL++ I G D
Sbjct: 1285 RMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDGFPD 1344
Query: 659 ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718
F MK M KP + AI QH+ +KPAL+FV SR+ RLTA+DL I+ C D F
Sbjct: 1345 NLAFCPLMKTMNKPVFMAIKQHSP-DKPALIFVASRRQTRLTALDL-IHLCGMEDNPRRF 1402
Query: 719 L-LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS 777
L + +E++ ++S + ++ L+ +L+ G+G H GL + D+ + LF+ KI++ + +S
Sbjct: 1403 LNIDDEEELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATS 1462
Query: 778 SMCWEVPLTAHLAT------------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHA 825
++ W V L AHL G + + LT +LQMMG AGRP D + ++
Sbjct: 1463 TLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKE 1522
Query: 826 PHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNP 882
K +YK FL FPVES LH L D+ AEI +G I NKQ+A+D+L+WTF R NP
Sbjct: 1523 SKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHNP 1582
Query: 883 NYYNLQ-GVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYK 941
YY ++ S +S+HLS L+++T+ +L ++ +++ D D+ + + I+SYYYIS+
Sbjct: 1583 TYYGIEDDTSTAGVSEHLSSLIDSTLENLRESQCVLLHGD-DIVATPFLSISSYYYISHL 1641
Query: 942 TIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCT-- 999
TI + + +L L+ A EY +LP+R GE + + R+S +
Sbjct: 1642 TIRQLLKQIHDHATFQEVLRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVESTFTDEF 1701
Query: 1000 -----DPHVKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLA 1053
DPHVK LLQAH S + + D VL + R+LQA +DV S G+
Sbjct: 1702 ELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTV 1761
Query: 1054 LLAMEVSQMVTQGMWEHDSMLLQLP--------HFTKDLAKRCQENPGRSIETVFDLLEM 1105
L +++ Q + QG W D + LP +T + P + + + L E+
Sbjct: 1762 LTMIKMMQCIKQGYWYEDDPVSVLPGLQLRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEI 1821
Query: 1106 EDDERRELLQMSDVQLLDIA-------RF---CNRFPNIDMSYKVQDSENVRAGGEDTTL 1155
++LL + D + RF C R P ++ K ++ EN +
Sbjct: 1822 GRFGYKKLLNVFDQLTFGMTESEDTKKRFVSVCQRLPVLE-GMKFEEQEN-------NEV 1873
Query: 1156 QVVLERDLGGRTELG-PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR 1202
+ L + G VY +++PK ++E W+L+ K ++LL IKR
Sbjct: 1874 LTFYSKHLSSKHNNGFEVYCDKFPKIQKELWFLI--GHKGDELLMIKR 1919
Score = 216 bits (551), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 204/870 (23%), Positives = 394/870 (45%), Gaps = 98/870 (11%)
Query: 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGS 478
Y+ N IQ+ V+ V Y T +N+L+ A PTG+
Sbjct: 285 YETLNQIQSLVYPVAYKTNENMLICA------------------------------PTGA 314
Query: 479 GKTICAEFAILRNHQRAS----------ETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528
GKT A I+ ++ S + + +Y+AP++ALA + + +K
Sbjct: 315 GKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVDKFSKKLAP-F 373
Query: 529 GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIG 587
+ V ELT + + + Q+I++TPEKWD ++R+ V +V L IIDE+HL+
Sbjct: 374 NIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLIIDEVHLLH 433
Query: 588 GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVR 646
G V+E +VAR ++ IRI+ LS +L N D+ +++G + G+F F R
Sbjct: 434 EDRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFR 493
Query: 647 PVPLEIQIQGVDITNFEARMKA-MTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705
P PLE Q+ G + K + K Y + + + +VFV SRK +A + +
Sbjct: 494 PKPLEQQLLGCRGKAGSRQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFI 553
Query: 706 IYSCKDSDQKSAFLLCSAKEVEPHVSII---QEEMLRATLRLGVGYLHEGLNKSDQEVVS 762
+S+ + E + + + +++ ++ + G G H G+ +SD+ +
Sbjct: 554 --KLAESNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLTE 611
Query: 763 TLFEAGKIKVCVMSSSMCWEVPLTAHLAT------------GRKMLILTTLLQMMGHAGR 810
+F+ G IKV ++++ W V L A G L ++ ++Q+ G GR
Sbjct: 612 KMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGR 671
Query: 811 PLLDNSEKCVILCHAPHK-EYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAV 869
P ++ ILC + + ++Y + + P+ES L DN NAEI G + N +A+
Sbjct: 672 PGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAI 731
Query: 870 DYLTWTF---RLTQNPNYYNL---QGVSHRHLSDHLSELVENTISDLEATRSIIMED-DM 922
++L +T+ R+ +NP Y + + + L + +++ L A + I+ ++ M
Sbjct: 732 EWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHALQMIVFDEVSM 791
Query: 923 DLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELV 982
+ G ++S +Y+ +++E F+ + +L +++ +SE+ + R E + +
Sbjct: 792 HFIAKDLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGIKFREEESKEL 851
Query: 983 RRLINHQRFSFANPKCTDPHVKANALLQAHFS-ARHMEGNLKLDQEKVLLSASRLLQAMV 1041
+RL + + P KAN LLQA+ S R + L D V ++ R+ +A+
Sbjct: 852 KRLSDESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQNSVRICRALF 911
Query: 1042 DVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFD 1101
+ + W + + + + + + + +W D L Q +++ +R ++ S+E
Sbjct: 912 LIGVNRRWGKFSNVMLNICKSIEKRLWAFDHPLCQF-DLPENIIRRIRDTKP-SME---H 966
Query: 1102 LLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLER 1161
LLE+E DE EL+ + + +RFP I N+ A T V
Sbjct: 967 LLELEADELGELVHNKKAG-SRLYKILSRFPKI----------NIEAEIFPITTNV---- 1011
Query: 1162 DLGGRTELGP--VYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRK---SRAKLDFA 1216
+ LGP V+ +R + +W+ V+++ +Q+L ++ L R+ ++ ++DF
Sbjct: 1012 -MRIHIALGPDFVWDSRI-HGDAQFFWVFVEESDKSQILHFEKFILNRRQLNNQHEMDFM 1069
Query: 1217 APVEGG-KKTYTLDFMCDSYMGCDQEYSFT 1245
P+ + + D+++GC+ ++ +
Sbjct: 1070 IPLSDPLPPQVVVKVVSDTWIGCESTHAIS 1099
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 199/648 (30%), Positives = 331/648 (51%), Gaps = 49/648 (7%)
Query: 474 APTGSGKTICAEFAILRN-HQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532
APTGSGKT+ E AI+R Q ++ VY+API+AL QRY DW+ KFG +G+
Sbjct: 172 APTGSGKTVIFELAIIRLLMQVPMPWTNVKIVYMAPIKALCGQRYDDWKAKFG-PVGLNC 230
Query: 533 VELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
ELT +T MD L ++ II++TPEKWD+++R+WK VQ V LF+IDE+H++ +
Sbjct: 231 KELTGDTEMDDLFEIQHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENR 290
Query: 591 GPVLEVIVARMRYIAS---QVENK-----IRIVALSTSLANAKDLGEWIG-ASSHGV-FN 640
G LEV+V+RM+ I S E++ +R VA+S ++ N +D+ +W+ +S GV
Sbjct: 291 GATLEVVVSRMKTIYSLSHLSEDRKAFIPMRFVAVSATIPNVEDIADWLSDENSPGVCMK 350
Query: 641 FPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKYAR 698
RPV L + G + ++ K Y I+Q + +P LVF +RK +
Sbjct: 351 MDESSRPVKLRKVVLGFPCSTKQSEFKFDLTLNYKIANIIQTYSDGRPTLVFCSTRKGVQ 410
Query: 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQ 758
A L D K + + ++ + I++ LR L+ GVGY H G++ SD+
Sbjct: 411 QAASILT------KDAKFVMSIEHKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDR 464
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLIL----------TTLLQMMGHA 808
+V+ F G + V +S++ V L AHL + + T +LQM+G A
Sbjct: 465 KVIENSFLIGDLPVLFTTSTLAMGVNLPAHLVIVKSTMHYVSGMFQEYSETDILQMIGRA 524
Query: 809 GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868
GRP D++ VI+ KE Y L A +ES LH L ++ NAEI I + + A
Sbjct: 525 GRPQFDSTATAVIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVKVA 584
Query: 869 VDYLTWTF---RLTQNPNYYNL-QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDL 924
++++ TF R +NP YY +G+ + L EL ++DL + I M+++++
Sbjct: 585 LEWIRSTFLYIRALKNPAYYGFSEGLDKIGIEAKLQELCLKNLNDLSSLGLIKMDEEINF 644
Query: 925 CPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRR 984
P+ G + + YYI++ T + F + ++T + L+ +++S SE++ + +R E ++
Sbjct: 645 KPTETGKLMALYYIAFNTAKLFHTIRGTET-LAELVSLISSCSEFSDVQLRANERRVLNT 703
Query: 985 L-INHQRFSFANP---KCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQA 1039
L + R + P K +K N L+QAH ++ +L D K+ +RL +
Sbjct: 704 LNKDKNRVTIRYPMEGKIKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKC 763
Query: 1040 MVDVIS-SNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAK 1086
+ + ++ S L A+ +++ +WE+ S H +K L K
Sbjct: 764 LSEFLALQENKFSAFLNALILTKCFKSKLWENSS------HISKQLEK 805
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 156/334 (46%), Gaps = 60/334 (17%)
Query: 4 GDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQ 63
DR+++E+ F G + VL +T+ LA GVNLPAH VI+K T Y G + E S DI+Q
Sbjct: 462 SDRKVIENSFLIGDLPVLFTTSTLAMGVNLPAHLVIVKSTMHY--VSGMFQEYSETDILQ 519
Query: 64 MLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQ 123
M+GRAGRPQ+DS +I+T S + Y+ +++ IES L E LNAEI L T+
Sbjct: 520 MIGRAGRPQFDSTATAVIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHTIT 579
Query: 124 NAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183
+ K A WI T+LY R L+NP YG S + I + ++ +L N L L+K
Sbjct: 580 DVKVALEWIRSTFLYIRALKNPAYYGFSEGLDKIGIEAKLQELCLKNLNDLSSLGLIKMD 639
Query: 184 RKSGYFQSEKIKM------------------------ELAKLL----------------- 202
+ + +E K+ EL L+
Sbjct: 640 EEINFKPTETGKLMALYYIAFNTAKLFHTIRGTETLAELVSLISSCSEFSDVQLRANERR 699
Query: 203 ---------DRVPI--PVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMS-----AGR 246
+RV I P++ ++ K+N L+Q ++ + ++ SLT D+S R
Sbjct: 700 VLNTLNKDKNRVTIRYPMEGKIKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTR 759
Query: 247 LSRALFE-IVLKRGWSQLAEKALKLSKMVTKRMW 279
L++ L E + L+ AL L+K ++W
Sbjct: 760 LAKCLSEFLALQENKFSAFLNALILTKCFKSKLW 793
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2
SV=2
Length = 1435
Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 190/694 (27%), Positives = 340/694 (48%), Gaps = 73/694 (10%)
Query: 412 YEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVL 471
+ ++++ + FN IQ++ F L T+ N ++ A
Sbjct: 271 FRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICA--------------------------- 303
Query: 472 QLAPTGSGKTICAEFAILRNHQRASETGV-MRAVYIAPIEALAKQRYCDWERKFGKELGM 530
PTGSGKT+ E AI R + ++ VY+API+AL QR+ DW+ KFG +G+
Sbjct: 304 ---PTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGP-IGL 359
Query: 531 CVVELTVETAMD-LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 589
ELT +T MD L ++ II++TPEKWD+++R+W+ VQ V LF+IDE+H++ +
Sbjct: 360 NCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDE 419
Query: 590 G-GPVLEVIVARMRYIASQVEN--------KIRIVALSTSLANAKDLGEWI--GASSHGV 638
GP LEV+V+RM+ + S + +R VA+S ++ NA+D+ EW+ G
Sbjct: 420 NRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVC 479
Query: 639 FNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTY--TAIMQHAKNEKPALVFVPSRKY 696
RPV L+ + G ++ + K Y +++Q ++KP LVF +RK
Sbjct: 480 LKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKG 539
Query: 697 ARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKS 756
+ A L+ D K + + ++ + +++ LR L+ G Y H G+ S
Sbjct: 540 VQQAASVLV------KDAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELS 593
Query: 757 DQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLIL----------TTLLQMMG 806
D++VV F G + V +S++ V L AHL + + T +LQM+G
Sbjct: 594 DRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIG 653
Query: 807 HAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQ 866
AGRP D + VI+ ++ Y + L VES LH L ++ NAEIV I +
Sbjct: 654 RAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVN 713
Query: 867 DAVDYLTWTF---RLTQNPNYYNL-QGVSHRHLSDHLSELVENTISDLEATRSIIMEDDM 922
AV+++ T R +NP++Y G++ + L EL ++DL + I M++ +
Sbjct: 714 IAVEWIRSTLLYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDEGV 773
Query: 923 DLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELV 982
+ P+ G + ++YYI+++T++ F +++ K + L+ ++A E+ + +R E++ +
Sbjct: 774 NFKPTEAGRLMAWYYITFETVKKF-YTISGKETLSDLVTLIAGCKEFLDIQLRINEKKTL 832
Query: 983 RRL-INHQRFSFANP---KCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLL 1037
L + R + P + +K N L+QA ++ L D K+ SR+
Sbjct: 833 NTLNKDPNRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRIT 892
Query: 1038 QAMVDVISSN-GWLSLALLAMEVSQMVTQGMWEH 1070
+ + D +++ ++ L ++ +++ +WE+
Sbjct: 893 RWLSDFVAAQEKKFAVLLNSLILAKCFRCKLWEN 926
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 102/181 (56%), Gaps = 2/181 (1%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
M+ DR++VE F G + VL +T+ LA GVNLPAH V+IK T Y G + E S D
Sbjct: 590 MELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETD 647
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
I+QM+GRAGRPQ+D+ +I+T S Y+ ++ + +ES L E LNAEIVL
Sbjct: 648 ILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLH 707
Query: 121 TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLV 180
T+ + A WI T LY R L+NP YG + + + ++ +L N L +L+
Sbjct: 708 TITDVNIAVEWIRSTLLYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLI 767
Query: 181 K 181
K
Sbjct: 768 K 768
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 169/652 (25%), Positives = 307/652 (47%), Gaps = 103/652 (15%)
Query: 366 DHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPI 425
DH L T P E P+ + + + + L +LP S+ +++ + FN +
Sbjct: 94 DHDLEQT-PDEEAKKPKKVTIRKS---AKKCLSTTILP------DSFRGVFK-FTEFNKM 142
Query: 426 QTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAE 485
Q++ F +Y + +N ++++ PTGSGKT+ E
Sbjct: 143 QSEAFPSIYESNENCIISS------------------------------PTGSGKTVLFE 172
Query: 486 FAILR-NHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA-MDL 543
AILR + S+T + +YIAP ++L + Y +W F + + V LT +T+ ++
Sbjct: 173 LAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW---FPSFVNLSVGMLTSDTSFLET 229
Query: 544 KLLEKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
+ +K III+TPEKWD L+RRW + + V L ++DE+H I + G LEVI+ RM
Sbjct: 230 EKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTRMN 289
Query: 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSH---GVFNFPPGVRPVPLEIQIQGVDI 659
+ IR VALS ++ N +DL W+ ++ + +F R V L + G
Sbjct: 290 TMCQN----IRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGY-- 343
Query: 660 TNFEARMKAMTKPTYTA-----IMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQ 714
+F + Y + I +HA N +P L+F P+R TA L+
Sbjct: 344 -SFNCKNDFQKDAIYNSKLIEIIEKHADN-RPVLIFCPTRASTISTAKFLL--------- 392
Query: 715 KSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCV 774
+ + +K+ H +++L ++ G+ + H G++ D+ V F AG I +
Sbjct: 393 -NNHIFSKSKKRCNHNP--SDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILC 449
Query: 775 MSSSMCWEVPLTAHLA--TGRKMLILTTL--------LQMMGHAGRPLLDNSEKCVILCH 824
+S++ V L A+L G K + + LQM+G AGRP + VI+
Sbjct: 450 STSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTD 509
Query: 825 APHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQN 881
+ K+ Y+ ++ +ES LH L ++ AE + + + AV++L TF R +N
Sbjct: 510 SKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKN 569
Query: 882 PNYYNLQGVSHRHLSDH------LSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASY 935
P Y Q V +R++S H +++ + + L + II + + + YG +
Sbjct: 570 PAAY--QEV-NRYVSFHSVEDSQINQFCQYLLDTLVKVK-IIDISNGEYKSTAYGNAMTR 625
Query: 936 YYISYKTIECFSSSLTSKT--KMKGLLEVLASASEYAQLPIRPGEEELVRRL 985
+YIS+++++ F + +K ++G+L +LA++ E++ + +R E++L + +
Sbjct: 626 HYISFESMKQF---INAKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEI 674
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
DR VE F G + +L ST+ LA GVNLPA+ VIIKGT+ +N + E S LD++QM
Sbjct: 432 DRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSSE--IQEYSDLDVLQM 489
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQN 124
+GRAGRPQ++++G +I+T Q Y +L++ +ES L E L AE L TV +
Sbjct: 490 IGRAGRPQFETHGCAVIMTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYS 549
Query: 125 AKEACNWIEYTYLYTRMLRNPVLY 148
+ A NW+ T+ Y R +NP Y
Sbjct: 550 IETAVNWLRNTFFYVRFGKNPAAY 573
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 149/554 (26%), Positives = 249/554 (44%), Gaps = 86/554 (15%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYC---DWERKFGKELGMC 531
PT SGKT+ AE AI+ ++ E G +AVY+ P++ALA++++ DWE ELG+
Sbjct: 47 PTASGKTLIAEIAIV--NRLLKEGG--KAVYLVPLKALAEEKFKEFKDWE-----ELGLK 97
Query: 532 VVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
V T + + L III+T EK+D+L R +++ V + ++DE+HLIG +
Sbjct: 98 VAMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGSS--WIRNVKVLVVDEIHLIGSRDR 155
Query: 591 GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPL 650
G LE I+ +Q+ N+ +I+ LS ++ N ++L EW+ A RPV L
Sbjct: 156 GATLEFII-------TQMLNRAQIIGLSATIGNPEELAEWLNAKL-----IKSDWRPVKL 203
Query: 651 EIQIQGVDITNF-------EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVD 703
+GV F + + + Y AI K K +LVFV R+ A TA++
Sbjct: 204 R---RGVFYQGFVFWEDGKTEKFNSWEELVYDAI----KRSKGSLVFVNMRRKAEKTALE 256
Query: 704 LMIYSCKDSDQKSAFLLCSA-KEVEPHVSIIQE----EMLRATLRLGVGYLHEGLNKSDQ 758
L S + FL +E++ ++E E L L+ GV + H GL + ++
Sbjct: 257 L-------SKKIRNFLTKKELRELKELAESLEENPTNEKLAKALQGGVAFHHAGLGREER 309
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTA----------HLATGRKMLILTTLLQMMGHA 808
+V F+ G IKV V + ++ + A + G + + + + QMMG A
Sbjct: 310 VLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRA 369
Query: 809 GRPLLDNSEKCVILCHAPHK----EYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIEN 864
GRP D + +I+ E Y K E + L A I +
Sbjct: 370 GRPKYDEVGEAIIVSTTEEPSTVMERYIKGKPEKLFSQLSNESILRGQILALIATFNFSS 429
Query: 865 KQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDL 924
++ D+L TF Q + Y L+ + D + L+EN + I ++D++
Sbjct: 430 FREIYDFLERTFYAYQGKDPYTLED----RIRDIVYFLLENEFIE------ITLDDEIKA 479
Query: 925 CPSNYGMIASYYYISYKTIECFSSSLTSKTKMK---GLLEVLASASEYAQLPIRPGEEEL 981
P G+ + YI T + F +L K G+L V++ + LP G++EL
Sbjct: 480 LP--LGIRTAKLYIDPMTAKIFKDTLPKIEKDPNPLGILHVISLTPDLIPLPY--GKKEL 535
Query: 982 VRRLINHQRFSFAN 995
++ + +SF +
Sbjct: 536 P--MLEDEYYSFKD 547
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 20/173 (11%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R +R LVE+ F G ++V+V+T L+ G+N PA VI++ T Y+ + + L+
Sbjct: 304 LGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVRDTWRYS--EFGMERIPILE 361
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSE----LQYYLSLMNQQLPIESQFVSKLAELLNAE 116
I QM+GRAGRP+YD GE II++ E ++ Y+ ++L ++L N
Sbjct: 362 IQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMERYIKGKPEKL---------FSQLSNES 412
Query: 117 IVLGTVQNAKEACNWIEYTYLYTRMLRNPVLY-GLSPEVLDITLGERITDLIH 168
I+ G + N+ + +Y + R Y G P TL +RI D+++
Sbjct: 413 ILRGQILALIATFNFSSFREIYDFLERTFYAYQGKDP----YTLEDRIRDIVY 461
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 119/423 (28%), Positives = 191/423 (45%), Gaps = 46/423 (10%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534
PT +GKT+ A AI QR ++++YI P+ +LA +++ + R ++LG+ V
Sbjct: 45 PTAAGKTLIAYSAIYETFQRN-----LKSIYIVPLRSLAMEKFSELSRL--RDLGLKVKM 97
Query: 535 LTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV-QQVSLFIIDELHLIGGQG-GP 592
+ +++ +I T EK D+L Y+ V L ++DE+H IG + GP
Sbjct: 98 SIGDYDDSPDFIKRYDAVILTSEKADSL---LHHDPYILNDVGLLVLDEIHTIGDESRGP 154
Query: 593 VLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEI 652
LE + + RY+ V RI+ALS +++NA +L W+ AS RPVPL+
Sbjct: 155 TLETVASIARYVNPDV----RILALSATVSNAMELASWLDASL-----IKSDFRPVPLKT 205
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
I D + + ++ I + ++ L+FV SRK A TA DL D+
Sbjct: 206 GILYRDQLYLDGKRRSGVSIN-QIIRETVEDNGQVLMFVSSRKKAEDTARDLAQIFGSDA 264
Query: 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV 772
+ K S+ E + ++ML L GV + H GL+ + + F A +IKV
Sbjct: 265 NIK-----ISSDETN-----VYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFRARRIKV 314
Query: 773 CVMSSSMCWEVPLTAHLATGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVIL 822
V + ++ V L A L R + L + QM+G AGRP D +I
Sbjct: 315 IVATPTLAAGVNLPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAGRPGYDQYGIGLIY 374
Query: 823 CHAPHK-EYYKKFL-YEAFPVESHLHHFLHDNFN--AEIVAGVIENKQDAVDYLTWTFRL 878
+ E K +L + PV S+L + FN A I G+ + D + + T
Sbjct: 375 VSSQSSYEAAKDYLSTDPEPVVSYLGNEAKVRFNTLAAISMGLARSPSDIMKFYETTLFF 434
Query: 879 TQN 881
+QN
Sbjct: 435 SQN 437
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R +E F ++V+V+T LA GVNLPA VI++ + + ++ L+ ++I QM+
Sbjct: 300 RAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISY--LTNMEIKQMI 357
Query: 66 GRAGRPQYDSYGEGIII----TGHSELQYYLSLMNQQLPIESQFVSKLAELLN--AEIVL 119
GRAGRP YD YG G+I + + + YLS + P+ S ++ N A I +
Sbjct: 358 GRAGRPGYDQYGIGLIYVSSQSSYEAAKDYLSTDPE--PVVSYLGNEAKVRFNTLAAISM 415
Query: 120 GTVQNAKEACNWIEYTYLYTR 140
G ++ + + E T +++
Sbjct: 416 GLARSPSDIMKFYETTLFFSQ 436
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 140/503 (27%), Positives = 221/503 (43%), Gaps = 73/503 (14%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRY---CDWERKFGKELGMC 531
PT SGKT+ AE AI ++ E G +AVYI P++ALA++++ DWER LG+
Sbjct: 47 PTASGKTLIAEIAI--ANKLLEEGG--KAVYIVPLKALAEEKFREFKDWER-----LGLK 97
Query: 532 VVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
V T + + L K III+T EK+D+L R +++ V + +IDE+HLIG +
Sbjct: 98 VAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSS--WIRDVKMLVIDEIHLIGSRDR 155
Query: 591 GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPL 650
G LE I+ +Q+ + +I+ LS ++ N ++L EW+ A RPV L
Sbjct: 156 GATLEFII-------TQMLGRAQIIGLSATIGNPEELAEWLNAKL-----IRSDWRPVKL 203
Query: 651 EIQIQGVDITNF-------EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVD 703
+GV F R + + Y A+ K K ALVFV R+ A TA++
Sbjct: 204 R---KGVFYQGFVFWEDGGSERYNSWEELVYDAV----KKGKGALVFVNMRRKAEKTALE 256
Query: 704 LMIYSCKDSDQKSAFLLCS-AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVS 762
L D+K L A+ +E + + E L L GV + H GL + ++ +V
Sbjct: 257 LAKKVKNYLDRKELRELRELAESLEENPT---NEKLAKALLSGVAFHHAGLGRDERVLVE 313
Query: 763 TLFEAGKIKVCVMSSSMCWEVPLTA----------HLATGRKMLILTTLLQMMGHAGRPL 812
F G IKV V + ++ + A + G + + + + QMMG AGRP
Sbjct: 314 DNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPVLEVQQMMGRAGRPR 373
Query: 813 LDNSEKCVILCHAPHK----EYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868
D + +I+ ++Y K E + L A I ++
Sbjct: 374 YDEVGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLSNESILRSQILALIATFGYSEFKEI 433
Query: 869 VDYLTWTFRLTQNPNYYNLQGVSHRHLSDHL-SELVENTISDLEATRSIIMEDDMDLCPS 927
D+L TF Q + Y L+ R + L +E +E T+ D ++ P
Sbjct: 434 YDFLERTFYAHQGKDPYMLEEKIRRIIYFLLENEFIEVTLED-------------EIKPL 480
Query: 928 NYGMIASYYYISYKTIECFSSSL 950
G+ + YI T + F +L
Sbjct: 481 PLGVRTTKLYIDPMTAKIFKDTL 503
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 15/179 (8%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R +R LVED F G ++V+V+T L+ G+N PA VII+ T Y+ + + L+
Sbjct: 304 LGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYS--EFGMERIPVLE 361
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSE----LQYYLSLMNQQLPIESQFVSKLAELLNAE 116
+ QM+GRAGRP+YD GE II++ E + +Y+ ++L + S L + A
Sbjct: 362 VQQMMGRAGRPRYDEVGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLSNESILRSQILAL 421
Query: 117 IVLGTVQNAKEACNWIEYT---------YLYTRMLRNPVLYGLSPEVLDITLGERITDL 166
I KE +++E T Y+ +R + + L E +++TL + I L
Sbjct: 422 IATFGYSEFKEIYDFLERTFYAHQGKDPYMLEEKIRRIIYFLLENEFIEVTLEDEIKPL 480
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 116/436 (26%), Positives = 198/436 (45%), Gaps = 57/436 (13%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534
PT +GKT+ A AI ++ ++++YI P+ +LA ++Y + R +ELGM V +
Sbjct: 45 PTAAGKTLIAYSAIYETFKKK-----LKSIYIVPLRSLAMEKYEELSRL--RELGMRV-K 96
Query: 535 LTVETAMDL-KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGP 592
L++ D +++ ++I T EK D+L +++V L +IDE+H+IG + GP
Sbjct: 97 LSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEIHMIGDEYRGP 154
Query: 593 VLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEI 652
LE ++ RY+ + RI+ALS +++NA ++ EW+ AS RPVPL++
Sbjct: 155 TLETVITTARYVNPET----RIIALSATVSNASEIAEWLNASL-----IKSSFRPVPLKV 205
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712
I + + ++ + + + L+FV SRK A A +L
Sbjct: 206 GILYRNRLFLDGDARSDVDINLL-VKETVDDGGQVLIFVSSRKRAEDMAKNL-------- 256
Query: 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV 772
F + +V + + +++L L GV + H GL+ + + F K+KV
Sbjct: 257 --SQLFDPINDLKVSSEDANVYDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKV 314
Query: 773 CVMSSSMCWEVPLTAHLAT----------GRKMLILTTLLQMMGHAGRPLLDNSEKCVIL 822
V + ++ V L A L G L + QM+G AGRP D +I
Sbjct: 315 IVATPTLAAGVNLPARLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYGIGIIY 374
Query: 823 CHAPH-----KEYYKKFLYEAFPVESHLHHFLHDNFN--AEIVAGVIENKQDAVDYLTWT 875
+ + KEY + E PV+S++ FN A I G+ ++ + ++ T
Sbjct: 375 AASANSYQVVKEYISE---EPEPVDSYIGKPEKVRFNTLAAIAMGLATSQVEMEEFYRST 431
Query: 876 FRLTQN-----PNYYN 886
F QN PN N
Sbjct: 432 FYYAQNGEDEIPNRIN 447
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R +E F ++V+V+T LA GVNLPA VI+K Y T LS +++ QM+
Sbjct: 300 RSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYG--DLGITYLSNMEVKQMI 357
Query: 66 GRAGRPQYDSYGEGII 81
GRAGRP YD YG GII
Sbjct: 358 GRAGRPGYDQYGIGII 373
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 121/476 (25%), Positives = 217/476 (45%), Gaps = 73/476 (15%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER--KFGKELGMCV 532
PT SGKT+ AE A+L + R +A+YI P+ ALA ++ D+E ++G ++G+
Sbjct: 48 PTASGKTLIAELAMLSSVARGG-----KALYIVPLRALASEKQADFEEFEQYGLDIGVST 102
Query: 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGG 591
E L I+++T EK D+L R +++ ++ + DE+HL+ G+ G
Sbjct: 103 GNYESEGGW----LADKDIVVATSEKVDSLVR--NDAPWIEDLTCVVTDEVHLVDDGERG 156
Query: 592 PVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLE 651
P LEV +A++R ++ ++ VALS ++ NA+ L W+ A G+ + RP+ L+
Sbjct: 157 PTLEVTLAKLR----RLNPDLQTVALSATIGNAEALATWLDA---GLVDSD--WRPIDLQ 207
Query: 652 IQI-------------QGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYAR 698
+ Q + + N E + A+ + T +++ LVFV SR+ A
Sbjct: 208 KGVHYGQALHLEDGSQQRLSVQNNEKQTAAIVRDTL-------EDDGSTLVFVNSRRNAE 260
Query: 699 LTAVDLMIY-----SCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGL 753
A L S ++ DQ L A+E+ + L + G + H GL
Sbjct: 261 AAAGRLANTVRPHLSTEERDQ----LADIAEEIRDVSDTETSDDLADAVADGAAFHHAGL 316
Query: 754 NKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL------------ATGRKMLILTTL 801
++ +E+V F +KV + ++ V + A G L + +
Sbjct: 317 SRGHRELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEV 376
Query: 802 LQMMGHAGRPLLDNSEKCVILC--HAPHKEYYKKFLY-EAFPVESHL--HHFLHDNFNAE 856
QMMG AGRP LD + V++ H E ++++++ + PV S L L + A
Sbjct: 377 HQMMGRAGRPGLDPYGEAVLIASSHDEVDELFERYVWADPEPVRSKLAAEPALRTHILAT 436
Query: 857 IVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 912
+ +G +++ +++L T +Q + L+ R + D L+ L N ++EA
Sbjct: 437 VASGFARSRKGLLEFLEQTLYASQTDDSGQLE----RVVDDVLTYLQRNDFLEIEA 488
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ RG R+LVED F D V+V+ +T LA GVN P+ V+++ + Y+ G LS L+
Sbjct: 316 LSRGHRELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLE 375
Query: 61 IMQMLGRAGRPQYDSYGEGIII-TGHSELQ 89
+ QM+GRAGRP D YGE ++I + H E+
Sbjct: 376 VHQMMGRAGRPGLDPYGEAVLIASSHDEVD 405
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 194/421 (46%), Gaps = 55/421 (13%)
Query: 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514
P + I L + +L +PT SGKT+ AE ++ + S+ G +A+YI P+ AL
Sbjct: 30 PQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMI--NYLLSKGG--KAIYITPLRALTN 85
Query: 515 QRYC---DWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQR-K 570
++Y DWE G + GM + + A LE II++T EK D+L W+ + K
Sbjct: 86 EKYNTFKDWE-TLGIKTGMTSGDYDTDDAW----LENYDIIVTTYEKLDSL---WRHKAK 137
Query: 571 YVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGE 629
++ +VS F++DE H + + GP +E + R + + ++ LS +++N K++
Sbjct: 138 WLNEVSYFVLDEFHYLNDPERGPTVESVAIRAK-------KRGIVLGLSATISNGKEIAN 190
Query: 630 WIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMT-KPTY--TAIMQHA----K 682
W+ A RPVPL+ I + F K T + Y AI+ +
Sbjct: 191 WLNAEL-----VATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDAIIAYTLDIVS 245
Query: 683 NEKPALVFVPSRKYARLTAVDLMIYS--CKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRA 740
LVF SRK A TA ++ Y K D+K + KEVE S +E++
Sbjct: 246 KGGQVLVFRSSRKLAENTARKIVQYMNFVKLEDKKLLEIARKIKEVEDAGSNEKEDLYNL 305
Query: 741 TLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT-------GR 793
LR GV Y H GL+K ++++ + F +KV V + ++ V L A R
Sbjct: 306 VLR-GVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIYRYNR 364
Query: 794 KMLILTTLL------QMMGHAGRPLLDNSEKCVILC---HAPHKEYYKKFLYEAFPVESH 844
K++ L+ QM G AGRP D + + V++ K Y + + + P+ES
Sbjct: 365 KVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKREAEKVYERYLMSDVEPIESK 424
Query: 845 L 845
L
Sbjct: 425 L 425
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 18/184 (9%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSP-L 59
+ +G R ++E F D ++V+V+T LA GVNLPA V+I YN + + +L P +
Sbjct: 317 LSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMDLIPVM 376
Query: 60 DIMQMLGRAGRPQYDSYGEGIIITGH---SELQYYLSLMNQQLPIESQFVSKLA--ELLN 114
D QM GRAGRP +D GE +++ + +E Y LM+ PIES+ S+ A L
Sbjct: 377 DYKQMSGRAGRPGFDENGEAVVVVRNKREAEKVYERYLMSDVEPIESKLGSESAFYSFLI 436
Query: 115 AEIVLGTVQNAKEACNWIEYTYL-------YTR-----MLRNPVLYGLSPEVLDITLGER 162
+ I + +E +++ T L Y R +L++ + +S ++ G R
Sbjct: 437 SIIASEGEKTTEELMEYVKETLLPKELAKKYFRSGLDWLLQHDIFAEISDKITLTRFGRR 496
Query: 163 ITDL 166
I+DL
Sbjct: 497 ISDL 500
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 140/539 (25%), Positives = 236/539 (43%), Gaps = 67/539 (12%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534
PT SGKT+ A+ A+L R A+YI P+ ALA ++ ++ F +E G+ V
Sbjct: 48 PTASGKTLVAQLAMLSAIDRGG-----TALYIVPLRALASEKREEFA-AF-EEYGLSVGV 100
Query: 535 LTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPV 593
T + L II++T EK D+L R ++ + + DE+HL+ + GP
Sbjct: 101 TTGSYEDTGEWLADKDIIVATSEKVDSLVRNGA--PWIDDLDCVVADEVHLVDDEHRGPT 158
Query: 594 LEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQ 653
LEV +A++R +V +++VALS ++ NA ++ EW+ A RP+ L
Sbjct: 159 LEVTLAKLR----RVNPNLQVVALSATVGNAGEMAEWLDAEL-----VDSSWRPIELR-- 207
Query: 654 IQGV---------DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDL 704
+GV D T E ++ KPT + + LVFV SR+ A A L
Sbjct: 208 -KGVHYGQALHFGDGTQQELPVQRTEKPTEAVVRETLDEGGSTLVFVNSRRNAEGAAKRL 266
Query: 705 MIYSCK--DSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVS 762
+ D+D+++A L A+E+ + L + G + H G + + +V
Sbjct: 267 AKTTVDGLDADERAA-LSSLAEEIRAVSDTETSDDLADCVEQGAAFHHAGCSSEHRSLVE 325
Query: 763 TLFEAGKIKVCVMSSSMCWEVPLTAHL------------ATGRKMLILTTLLQMMGHAGR 810
F IK + ++ V A A G + L + + QMMG AGR
Sbjct: 326 DAFRDRLIKTICATPTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGR 385
Query: 811 PLLDNSEKCVILC--HAPHKEYYKKFLY-EAFPVESHLHH--FLHDNFNAEIVAGVIENK 865
P D + V+L H E ++++ + PVES L + + A + +G +++
Sbjct: 386 PGRDPYGEAVLLADSHDELDELLDRYVWADPEPVESKLAREPSMRTHLLATVASGFADSR 445
Query: 866 QDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLC 925
+ +L T TQ H D+L +V+ T+S LE T I D +
Sbjct: 446 SALLSFLDRTLYATQ---------YRHGDGEDNLERVVDTTLSYLE-TNGFIDRDGDAIE 495
Query: 926 PSNYGMIASYYYI----SYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEE 980
++ G S Y+ + + I+ + + S T M GL +++A + +L +R G+ E
Sbjct: 496 ATDLGHTVSRLYLDPMSAAEIIDGLADA-ASPTAM-GLYQLVARTPDMYELYLRSGDRE 552
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R LVED F D ++ + +T LA GVN PA V+++ + Y+ + G LS L++ QM+
Sbjct: 321 RSLVEDAFRDRLIKTICATPTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLSVLEVHQMM 380
Query: 66 GRAGRPQYDSYGEGIIIT-GHSELQYYLS--LMNQQLPIESQFV 106
GRAGRP D YGE +++ H EL L + P+ES+
Sbjct: 381 GRAGRPGRDPYGEAVLLADSHDELDELLDRYVWADPEPVESKLA 424
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/442 (26%), Positives = 202/442 (45%), Gaps = 64/442 (14%)
Query: 439 NVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498
NV+ +R + P + + L + +L +PTGSGKT+ AE I+ +
Sbjct: 11 NVIDIIKNRGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG- 69
Query: 499 GVMRAVYIAPIEALAKQRYC---DWERKFGKELGMCVVELTVETAMDLKLLEKGQIIIST 555
+A+Y+ P+ AL ++Y DWE +G V + + D L+ III+T
Sbjct: 70 ---KAIYVTPLRALTNEKYLTFKDWE-----SIGFKVAMTSGDYDTDDAWLKNYDIIITT 121
Query: 556 PEKWDALSRRWKQR-KYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIR 613
EK D+L W+ R ++ + + F++DELH + + GPV+E + R + +
Sbjct: 122 YEKLDSL---WRHRPDWLNEANYFVLDELHYLNDPERGPVVESVTIRAK--------RRN 170
Query: 614 IVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPT 673
++ALS +++N K + +W+GA RPVPL ++GV + + +
Sbjct: 171 LLALSATISNYKQIAKWLGAEP-----VATNWRPVPL---MEGVMYPERKKKEYTILFRD 222
Query: 674 YTAIMQHAKNEKPA------------LVFVPSRKYARLTAVDLMIYSCKDS-DQKS-AFL 719
TA H + A LVF SRK A TA+ + Y S D+K+ + +
Sbjct: 223 NTARKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAISEI 282
Query: 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779
L ++E S ++E+L++ + GV Y H GL+K+ ++++ F KIKV V + ++
Sbjct: 283 LKQLDDIEEGGSD-EKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTL 341
Query: 780 CWEVPLTAHLAT-------GRKM------LILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826
V L A RK+ + + QM G AGRP D + +I+
Sbjct: 342 AAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDK 401
Query: 827 H---KEYYKKFLYEAFPVESHL 845
+ + K L + P+ES L
Sbjct: 402 EDVDRVFKKYILSDVEPIESKL 423
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 10/112 (8%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPE-KGAWTELSPLDIMQM 64
R ++E+ F ++V+V+T LA GVNLPA TVII +N + G + E+ ++ QM
Sbjct: 320 RDIIEESFRKRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQM 379
Query: 65 LGRAGRPQYDSYGEGIIITGHSE------LQYYLSLMNQQLPIESQFVSKLA 110
GRAGRP +D GE II+ E +Y LS + PIES+ S+ A
Sbjct: 380 SGRAGRPGFDQIGESIIVVRDKEDVDRVFKKYILSDVE---PIESKLGSERA 428
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 188/430 (43%), Gaps = 54/430 (12%)
Query: 446 SRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVY 505
SR + P + + L +L PT SGKT+ AE ++ + +A+Y
Sbjct: 21 SRGIKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHLLNKGG----KAIY 76
Query: 506 IAPIEALAKQRYC---DWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDAL 562
+ P+ AL ++Y DWE+ LG V + + D L II++T EK D+L
Sbjct: 77 VTPLRALTSEKYSTFKDWEK-----LGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDSL 131
Query: 563 SRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSL 621
R ++++ + F++DE H + G GPV+E + R + + I+ALS ++
Sbjct: 132 WRH--SAEWLKDIDYFVLDEFHYMNDGDRGPVVEGVAVRAKRQGT-------ILALSATI 182
Query: 622 ANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQI------QGVDITNFEARMKAMT--KPT 673
NAKD+ +W+ A RPVPL+ + +G I + + P
Sbjct: 183 GNAKDVAKWLNADI-----VATNWRPVPLKEGVMYSEGKKGHIILYSDGTTNKLKGDDPI 237
Query: 674 YTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYS--CKDSDQKSAFLLCSAKEVEPHVS 731
+ +VF SRKYA TA+ + Y K D+K KEVE S
Sbjct: 238 IAYTLDILSKGGQVIVFRSSRKYAETTAMKISQYMNFVKLDDKKLLETAERIKEVEDAGS 297
Query: 732 IIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT 791
+E + +R GV + H GL+K ++++ F IKV + ++ V L A
Sbjct: 298 NEKEVLYNLIVR-GVAFHHAGLSKGLRDIIEASFRERIIKVITATPTLAAGVNLPARAVV 356
Query: 792 -------GRKMLILTTLL------QMMGHAGRPLLDNSEKCVILCHAPHK--EYYKKFLY 836
RK++ T ++ QM G AGRP DN + +IL + + + K+L+
Sbjct: 357 IGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILVRSKVEVDKVIDKYLH 416
Query: 837 EAF-PVESHL 845
P+ES L
Sbjct: 417 SDIEPIESKL 426
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTEL-SPL 59
+ +G R ++E F + ++V+ +T LA GVNLPA V+I +N + +TE+ S +
Sbjct: 318 LSKGLRDIIEASFRERIIKVITATPTLAAGVNLPARAVVIGDIYRFNRKIVGFTEMISTM 377
Query: 60 DIMQMLGRAGRPQYDSYGEGIII 82
+ QM GRAGRP YD++GE II+
Sbjct: 378 EYRQMSGRAGRPGYDNHGEAIIL 400
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 133/518 (25%), Positives = 229/518 (44%), Gaps = 93/518 (17%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK---QRYCDWERKFGKELGMC 531
PT SGKT+ AE A++ H+ ++ G +AVYI P++ALA+ Q + DWE+ +G+
Sbjct: 47 PTASGKTLIAEIAMV--HRILTQGG--KAVYIVPLKALAEEKFQEFQDWEK-----IGLR 97
Query: 532 VVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 590
V T + + L K III+T EK+D+L R +++ V + + DE+HLIG +
Sbjct: 98 VAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSS--WIKDVKILVADEIHLIGSRDR 155
Query: 591 GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPL 650
G LEVI+A M K +I+ LS ++ N ++L EW+ A RPV L
Sbjct: 156 GATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKL 203
Query: 651 EIQIQGVDITNFEA-------RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVD 703
+GV F R + + Y AI + +K AL+FV R+ A A++
Sbjct: 204 R---RGVFYQGFVTWEDGSIDRFSSWEELVYDAI----RKKKGALIFVNMRRKAERVALE 256
Query: 704 LMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE-----------EMLRATLRLGVGYLHEG 752
L +K LL +P + + E E L +R GV + H G
Sbjct: 257 L--------SKKVKSLLT-----KPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303
Query: 753 LNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT----------GRKMLILTTLL 802
L + ++ +V F G IK V + ++ + A G + + + +
Sbjct: 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVH 363
Query: 803 QMMGHAGRPLLDNSEKCVILCHAPH-KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGV 861
QM+G AGRP D + +I+ + +E +++ P + N ++++A +
Sbjct: 364 QMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIF-GKPEKLFSQLSNESNLRSQVLALI 422
Query: 862 I----ENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
++ + +++ TF Q + Y+L+ + + L L+EN + I
Sbjct: 423 ATFGYSTVEEILKFISNTFYAYQRKDTYSLE----EKIRNILYFLLENEFIE------IS 472
Query: 918 MEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTK 955
+ED + P + G+ + YI T + F + K
Sbjct: 473 LED--KIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVK 508
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 20/192 (10%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R +R LVE+ F G ++ +V+T L+ G+N PA VII+ Y+ + ++
Sbjct: 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYS--DFGMERIPIIE 361
Query: 61 IMQMLGRAGRPQYDSYGEGIIITGHSE----LQYYL----SLMNQQLPIESQFVSKLAEL 112
+ QMLGRAGRP+YD GEGII++ + + +Y+ + QL ES S++ L
Sbjct: 362 VHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLAL 421
Query: 113 L------NAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDL 166
+ E +L + N A + TY +RN + + L E ++I+L ++I L
Sbjct: 422 IATFGYSTVEEILKFISNTFYAYQRKD-TYSLEEKIRNILYFLLENEFIEISLEDKIRPL 480
Query: 167 ---IHTAANVLD 175
I TA +D
Sbjct: 481 SLGIRTAKLYID 492
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 179/352 (50%), Gaps = 38/352 (10%)
Query: 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFG 525
N++L + PT SGKT+ +E ++ ++ SE G +AVY+ P++ALA+++Y ++ K
Sbjct: 41 NLVLAI---PTASGKTLVSEIVMV--NKLLSEGG--KAVYLVPLKALAEEKYREF--KEW 91
Query: 526 KELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 585
+ LG+ V T + + L + II++T EK+D+L R +++ V L + DE+HL
Sbjct: 92 EVLGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLRHGAS--WIKDVKLVVADEVHL 149
Query: 586 IGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPG 644
IG G LE+I+ M K +I+ALS ++ NA++L EW+ AS
Sbjct: 150 IGSYDRGATLEMILTHML-------GKAQILALSATVGNAEELAEWLDASL-----VVSD 197
Query: 645 VRPVPLEIQIQGVDITNFE-ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVD 703
RPV L + + +E ++ + + ++ K K ALVFV +R+ A A+
Sbjct: 198 WRPVELRKGVFHLGQLFWEDGKIDHYPENWESLVLDAVKKGKQALVFVNTRRSAEKEAIS 257
Query: 704 LMIYSCKDSDQKSAFLL-CSAKEVEPHVSIIQE----EMLRATLRLGVGYLHEGLNKSDQ 758
L S + S L + +E +S I++ E L+ L+ GV + H GL+++++
Sbjct: 258 L-------SSKVSKLLTKPETRRLEELISSIEDNPTTEKLKRALKGGVAFHHAGLSRAER 310
Query: 759 EVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATG-RKMLILTTLLQMMGHAG 809
++ F G IKV + ++C +G +K+ LT +++ H G
Sbjct: 311 TLIEDAFRNGLIKVITATPTLCMHPDTYVVTKSGAKKVSELTEGDEVLTHTG 362
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 30 GVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 83
G+NLPA VII+ T+ Y WT++ L+I QM+GRAGRP+YD GE II+
Sbjct: 737 GINLPAFRVIIRDTKRY--ANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVA 788
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 803 QMMGHAGRPLLDNSEKCVILCHAPH-KEYYKKFLYEAFPVESHLHHFLHDN--FNAEIVA 859
QMMG AGRP D + +I+ K+ ++++ L L + F ++++A
Sbjct: 768 QMMGRAGRPKYDKVGEAIIVARTEDPKKLIDRYIHGK---PEKLFSMLANEQAFRSQVLA 824
Query: 860 GV----IENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRS 915
+ +E+ ++ VD+L+ TF Q + +L+ + D + L+EN D++
Sbjct: 825 LITNFGVEDFRELVDFLSRTFYAHQRGDTSSLEYKA----KDIVYFLIENEFIDMDVENR 880
Query: 916 IIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMK---GLLEVLASASEYAQL 972
I P +G S YI T + F + + + G+ ++LAS + A L
Sbjct: 881 FIA------LP--FGRRTSQLYIDPLTAKKFKDAFPAIERNPNPFGIFQLLASTPDMATL 932
Query: 973 PIRPGEEE 980
R E E
Sbjct: 933 TARRREME 940
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 194/457 (42%), Gaps = 66/457 (14%)
Query: 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514
P + I L +L PT SGKT+ AE A+++ + +A+YI P+ ALA
Sbjct: 27 PQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGG-----KALYIVPLRALAS 81
Query: 515 QRYCDWER--KFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 572
+++ ++ FG ++G+ +L L II++T EK D+L R ++
Sbjct: 82 EKFERFKELAPFGIKVGISTGDLDSRA----DWLGVNDIIVATSEKTDSLLR--NGTSWM 135
Query: 573 QQVSLFIIDELHLIGGQG-GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWI 631
+++ ++DE+HL+ + GP LEV + ++ + V+ +VALS ++ NA+++ +W+
Sbjct: 136 DEITTVVVDEIHLLDSKNRGPTLEVTITKLMRLNPDVQ----VVALSATVGNAREMADWL 191
Query: 632 GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTK----PTYTAIMQHAKNEKPA 687
GA+ RP L + D NF K + + ++ K E
Sbjct: 192 GAAL-----VLSEWRPTDLHEGVLFGDAINFPGSQKKIDRLEKDDAVNLVLDTIKAEGQC 246
Query: 688 LVFVPSR------------KYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE 735
LVF SR K A++ D+MI L A+EVE
Sbjct: 247 LVFESSRRNCAGFAKTASSKVAKILDNDIMIK-----------LAGIAEEVESTGETDTA 295
Query: 736 EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT---- 791
+L +R GV + H GLN + +++V F IKV + ++ + L A
Sbjct: 296 IVLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSY 355
Query: 792 -------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCH-----APHKEYYKKFLYEAF 839
G + + + QM G AGRP LD + V+L A E Y + E
Sbjct: 356 RRFDSNFGMQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKTYDEFAQLMENYVEADAEDI 415
Query: 840 PVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF 876
+ + L + + IV G +Q+ D+ TF
Sbjct: 416 WSKLGTENALRTHVLSTIVNGFASTRQELFDFFGATF 452
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM--- 62
R+LVE+ F ++V+ ST LA G+NLPA VII+ + ++ G + P+ ++
Sbjct: 318 RKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSNFG----MQPIPVLEYK 373
Query: 63 QMLGRAGRPQYDSYGEGIII 82
QM GRAGRP D YGE +++
Sbjct: 374 QMAGRAGRPHLDPYGESVLL 393
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 129/505 (25%), Positives = 232/505 (45%), Gaps = 82/505 (16%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
+L PT SGKT+ AE A+L++ +A+YI P+ ALA +++ R+F +E
Sbjct: 42 LLAAIPTASGKTLLAELAMLKSVLNGG-----KALYIVPLRALASEKF----RRF-QEFS 91
Query: 530 MCVVELTVETAMDLKLLEKG----QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 585
+ + + + T D ++G II++T EK D+L R + ++Q++S+ + DE+HL
Sbjct: 92 VLGMRVGISTG-DYDRRDEGLGINDIIVATSEKTDSLLR--NETAWMQEISVVVADEVHL 148
Query: 586 IGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPG 644
I GP LE+ ++++R ++ +++ALS ++ NA +L W+ A
Sbjct: 149 IDSPDRGPTLEITLSKLR----RMNPSCQVLALSATVGNADELAAWLDAEL-----VLSE 199
Query: 645 VRPVPLEIQIQGV---DITNFEARMKAMTKPT----YTAIMQHAKNEKPALVFVPSRK-- 695
RP L ++GV I + + K + +PT ++ K LVF SRK
Sbjct: 200 WRPTDL---MEGVFYNGIFYCKDKEKPVGQPTKDEAVNLVLDTIKEGGQCLVFESSRKNC 256
Query: 696 --YARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGL 753
+A+ AV + + + D+++ L A E+ + +L +R G + H GL
Sbjct: 257 MGFAK-KAVSAVKKTLSNEDRET--LAGIADEIIENSETDVSSVLATCVRSGTAFHHAGL 313
Query: 754 NKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA-----------TGRKMLILTTLL 802
+E+V F G+IK+ + ++ + L A +G + + +
Sbjct: 314 TTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYK 373
Query: 803 QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAF------PVESHL--HHFLHDNFN 854
QM G AGRP LD + V+L + ++E+ FL+E + + S L + L +
Sbjct: 374 QMAGRAGRPRLDPYGEAVLLAKS-YEEFV--FLFEKYIEAGAEDIWSKLGTENALRTHIL 430
Query: 855 AEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATR 914
+ I G +++ +D+L TF Q N+ LS +V+ + L R
Sbjct: 431 STISNGFARTREELMDFLEATFFAFQYSNF-------------GLSAVVDECLDFLR--R 475
Query: 915 SIIMEDDMD-LCPSNYGMIASYYYI 938
++E D D L + +G + S YI
Sbjct: 476 EGMLEKDPDALVSTVFGKLVSRLYI 500
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM--- 62
R+LVE+ F +G ++++ ST LA G+NLPA VII+ + Y+ + G + P+ ++
Sbjct: 318 RELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSG----MQPIPVLEYK 373
Query: 63 QMLGRAGRPQYDSYGEGIIITGHSELQYYL 92
QM GRAGRP+ D YGE +++ E +L
Sbjct: 374 QMAGRAGRPRLDPYGEAVLLAKSYEEFVFL 403
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 132/502 (26%), Positives = 226/502 (45%), Gaps = 77/502 (15%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
+L PT SGKT+ AE A+L++ +A+YI P+ ALA +++ + R+F ELG
Sbjct: 42 LLAAIPTASGKTLLAELAMLKSILAGG-----KALYIVPLRALASEKFRRF-REF-SELG 94
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG- 588
+ V T + + + L II++T EK D+L R + ++Q++S+ + DE+HLI
Sbjct: 95 IRVGISTGDYDLRDEGLGVNDIIVATSEKTDSLLR--NETVWMQEISVVVADEVHLIDSP 152
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPV 648
GP LEV +A++R ++ +I+ALS ++ NA +L W+ A RP
Sbjct: 153 DRGPTLEVTLAKLR----KMNPSCQILALSATVGNADELAVWLEAEL-----VVSEWRPT 203
Query: 649 PLEIQIQGVDITN---FEARMKAMTKPTYTAIMQHA----KNEKPALVFVPSRK----YA 697
L ++GV + R K + + T + A K + LVF SRK +A
Sbjct: 204 EL---LEGVFFNGTFYCKDREKTVEQSTKDEAVNLALDTLKKDGQCLVFESSRKNCMAFA 260
Query: 698 RLTAVDLM-IYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKS 756
+ A + S +D + + A E+ + L +R G + H GL
Sbjct: 261 KKAASTVKKTLSAEDRNALAGI----ADEILENSETDTSTNLAVCIRSGTAFHHAGLTTP 316
Query: 757 DQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT-----------GRKMLILTTLLQMM 805
+E+V F AG+IK+ + ++ + L A G + + + QM
Sbjct: 317 LRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLEYKQMA 376
Query: 806 GHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHF---------LHDNFNAE 856
G AGRP LD + V++ + +KE+ FL+E + +E++ L + +
Sbjct: 377 GRAGRPRLDPYGEAVLVAKS-YKEFV--FLFENY-IEANAEDIWSKLGTENALRTHVLST 432
Query: 857 IVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSI 916
I G + +D+L TF Q N+ LS +V ++ L +
Sbjct: 433 ISNGFARTYDELMDFLEATFFAFQYSNF-------------GLSTVVNECLNFLR--QEG 477
Query: 917 IMEDDMDLCPSNYGMIASYYYI 938
++E D L P+++G + S YI
Sbjct: 478 MLEKDDALIPTSFGKLVSRLYI 499
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM--- 62
R+LVED F G ++++ ST LA G+NLPA VII+ + Y+ E G + P+ ++
Sbjct: 318 RELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSEDG----MQPIPVLEYK 373
Query: 63 QMLGRAGRPQYDSYGEGIII 82
QM GRAGRP+ D YGE +++
Sbjct: 374 QMAGRAGRPRLDPYGEAVLV 393
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 133/504 (26%), Positives = 230/504 (45%), Gaps = 80/504 (15%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFG--KE 527
+L PT SGKT+ AE A+L++ +A+YI P+ ALA +++ R+F E
Sbjct: 42 LLAAIPTASGKTLLAELAMLKSVLAGG-----KALYIVPLRALASEKF----RRFQDFSE 92
Query: 528 LGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI- 586
LG+ V T + + L II++T EK D+L R + ++Q++S+ ++DE+HLI
Sbjct: 93 LGIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLR--NETAWMQEISVVVVDEVHLID 150
Query: 587 GGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVR 646
GP LEV +A++R ++ +I+ALS ++ NA +L W+ A R
Sbjct: 151 SADRGPTLEVTLAKLR----KMNPFCQILALSATVGNADELAAWLDAEL-----VLSEWR 201
Query: 647 PVPLEIQIQGV--DITNF-EARMKAMTKPT----YTAIMQHAKNEKPALVFVPSRKYA-- 697
P L ++GV D T F + + K + +PT ++ + LVF SRK
Sbjct: 202 PTDL---MEGVFFDGTFFCKDKEKLIEQPTKDEAINLVLDTLREGGQCLVFESSRKNCMG 258
Query: 698 ---RLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLN 754
+ T+ S +D ++ + A E+ + +L + +R G + H GL
Sbjct: 259 FAKKATSAVKKTLSAEDKEKLAGI----ADEILENSETDTASVLASCVRAGTAFHHAGLT 314
Query: 755 KSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA-----------TGRKMLILTTLLQ 803
+E+V T F G +K+ + ++ + L A +G + + + Q
Sbjct: 315 SPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQ 374
Query: 804 MMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAF------PVESHL--HHFLHDNFNA 855
M G AGRP LD + V+L + ++E FL+E + + S L + L + +
Sbjct: 375 MAGRAGRPRLDPYGEAVLLAKS-YEELL--FLFEKYIEAGAEDIWSKLGTENALRTHVLS 431
Query: 856 EIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRS 915
I G K++ +D+L TF Q N+ LS +V+ ++ L +
Sbjct: 432 TISNGFARTKEELMDFLEATFFAYQYSNF-------------GLSVVVDECLNFLR--QE 476
Query: 916 IIMEDDMD-LCPSNYGMIASYYYI 938
++E D D L + +G + S YI
Sbjct: 477 GMLEQDSDALISTMFGKLVSRLYI 500
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM--- 62
R+LVE F +G+V+++ ST LA G+NLPA VII+ + Y+ + G + P+ ++
Sbjct: 318 RELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSG----MQPIPVLEYK 373
Query: 63 QMLGRAGRPQYDSYGEGIIITGHSELQYYL 92
QM GRAGRP+ D YGE +++ E +L
Sbjct: 374 QMAGRAGRPRLDPYGEAVLLAKSYEELLFL 403
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 195/448 (43%), Gaps = 47/448 (10%)
Query: 475 PTGSGKTICAEFAILRNHQRASET----GVMRAVYIAPIEALAKQRYCDWE--RKFGKEL 528
PT SGKT+ A+ A+L ++ G A+YI P+ ALA ++ ++E +FG +
Sbjct: 48 PTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRALAGEKAQEFEAFERFGLSV 107
Query: 529 GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 588
G+ T D L I+++T EK D+L R ++ +S + DE+HL+
Sbjct: 108 GVS----TGNYERDGARLADNDIVVATSEKVDSLVRNGA--GWIDDLSCVVADEVHLVDD 161
Query: 589 -QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRP 647
GP LEV +A++R QV + +++VALS ++ NA +L W+ A RP
Sbjct: 162 DHRGPTLEVTLAKLR---QQVAD-LQVVALSATVGNAGELAAWLDAEL-----VDSDWRP 212
Query: 648 VPLEIQI---QGV---DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTA 701
+ L + Q + D T E + + ++ T + ++ LVFV SR+ A +A
Sbjct: 213 IELRTGVHYGQSLHYDDGTQAELSVGSGSQ-TAAVVADTLADDGSTLVFVNSRRNAEASA 271
Query: 702 VDLM-IYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEV 760
L + S + L A E+ + L + G + H GL + +E+
Sbjct: 272 RRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHHAGLAREHREL 331
Query: 761 VSTLFEAGKIKVCVMSSSMCWEVPLTAH------------LATGRKMLILTTLLQMMGHA 808
V F +K + ++ V A A G + L + + QM G A
Sbjct: 332 VEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFGRA 391
Query: 809 GRPLLDNSEKCVILC--HAPHKEYYKKFLY-EAFPVESHL--HHFLHDNFNAEIVAGVIE 863
GRP LD + V+L H +E + +++Y + PV S L L + A I G
Sbjct: 392 GRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFTT 451
Query: 864 NKQDAVDYLTWTFRLTQNPNYYNLQGVS 891
+ ++L T TQ + L+ V+
Sbjct: 452 TEDGLHEFLGGTLYATQTDDTGRLRSVT 479
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R R+LVE+ F D V+ + +T LA GVN PA V+++ Q Y+ G L L+
Sbjct: 324 LAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLE 383
Query: 61 IMQMLGRAGRPQYDSYGEGIIIT-GHSELQ 89
+ QM GRAGRP D YGE +++ H EL+
Sbjct: 384 VHQMFGRAGRPGLDPYGEAVLLANSHDELE 413
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 117/448 (26%), Positives = 195/448 (43%), Gaps = 47/448 (10%)
Query: 475 PTGSGKTICAEFAILRNHQRASET----GVMRAVYIAPIEALAKQRYCDWE--RKFGKEL 528
PT SGKT+ A+ A+L ++ G A+YI P+ ALA ++ ++E +FG +
Sbjct: 48 PTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRALAGEKAQEFEAFERFGLSV 107
Query: 529 GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 588
G+ T D L I+++T EK D+L R ++ +S + DE+HL+
Sbjct: 108 GVS----TGNYERDGARLADNDIVVATSEKVDSLVRNGA--GWIDDLSCVVADEVHLVDD 161
Query: 589 -QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRP 647
GP LEV +A++R QV + +++VALS ++ NA +L W+ A RP
Sbjct: 162 DHRGPTLEVTLAKLR---QQVAD-LQVVALSATVGNAGELAAWLDAEL-----VDSDWRP 212
Query: 648 VPLEIQI---QGV---DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTA 701
+ L + Q + D T E + + ++ T + ++ LVFV SR+ A +A
Sbjct: 213 IELRTGVHYGQSLHYDDGTQAELSVGSGSQ-TAAVVADTLADDGSTLVFVNSRRNAEASA 271
Query: 702 VDLM-IYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEV 760
L + S + L A E+ + L + G + H GL + +E+
Sbjct: 272 RRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHHAGLAREHREL 331
Query: 761 VSTLFEAGKIKVCVMSSSMCWEVPLTAH------------LATGRKMLILTTLLQMMGHA 808
V F +K + ++ V A A G + L + + QM G A
Sbjct: 332 VEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFGRA 391
Query: 809 GRPLLDNSEKCVILC--HAPHKEYYKKFLY-EAFPVESHL--HHFLHDNFNAEIVAGVIE 863
GRP LD + V+L H +E + +++Y + PV S L L + A I G
Sbjct: 392 GRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFTT 451
Query: 864 NKQDAVDYLTWTFRLTQNPNYYNLQGVS 891
+ ++L T TQ + L+ V+
Sbjct: 452 TEDGLHEFLGGTLYATQTDDTGRLRSVT 479
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R R+LVE+ F D V+ + +T LA GVN PA V+++ Q Y+ G L L+
Sbjct: 324 LAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLE 383
Query: 61 IMQMLGRAGRPQYDSYGEGIIIT-GHSELQ 89
+ QM GRAGRP D YGE +++ H EL+
Sbjct: 384 VHQMFGRAGRPGLDPYGEAVLLANSHDELE 413
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 128/488 (26%), Positives = 222/488 (45%), Gaps = 89/488 (18%)
Query: 453 RLPAKQRITAAL----PNIILVLQLAPTGSGKTICAEFAILRNH---QRASETGVMRAVY 505
R P K+ I L N ++ + PT SGKT+ E A+L NH + + TG + ++
Sbjct: 17 RPPQKKVIEEGLLDKSKNFLICI---PTASGKTLIGEMALL-NHVLDENYNLTG-KKGLF 71
Query: 506 IAPIEALAKQRYCDWERKF---GKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDAL 562
I P++ALA +++ ++++K+ G ++GM + + +T DL K III+T EK D+L
Sbjct: 72 IVPLKALASEKFDEFQKKYETYGIKVGMSIGD--YDTKEDL---SKYNIIITTSEKLDSL 126
Query: 563 SRRWKQRKYVQQVSLFIIDELHLIG-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSL 621
R ++++ +SL +IDE+HLIG + G LEVI+ +++ I +Q IV LS ++
Sbjct: 127 MRH--NIEWIKDLSLAVIDEIHLIGDNERGGTLEVILTKLKNINAQ------IVGLSATV 178
Query: 622 ANAKDLGEWIGASSHGVFNFPPGVRPVPLE-----------IQIQGVDITNFEARMKAMT 670
N +++ W+ A RPV L+ I Q +F+A +K+++
Sbjct: 179 GNPEEIANWLNAKL-----VTDEWRPVELKKGIYLENEINYINNQDSQKKSFKA-VKSIS 232
Query: 671 KPTYTAIMQHAKNEKPA-LVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPH 729
+ T ++ + NEK + L+F S++ A +S + + S E+
Sbjct: 233 RNNLTDLIVDSVNEKGSCLIFCNSKRNA-----------VGESKKHNLTKYLSKAELNDL 281
Query: 730 VSIIQE------------EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV--CVM 775
SI +E + L ++ GV + H GL ++ V F IKV C
Sbjct: 282 NSISEEILSILETPTETCKSLSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCTP 341
Query: 776 SSSMCWEVPLTAHLATGRKMLILTTLL--------QMMGHAGRPLLDNSEKCVILCHAPH 827
+ S +P + + L+ Q +G AGRP LD + +IL
Sbjct: 342 TLSAGLNLPCRRAIIRDIRRYSQNGLIDIPKLEIHQCIGRAGRPGLDPYGEGIILAKN-E 400
Query: 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGV-----IENKQDAVDYLTWTFRLTQNP 882
K+ K FL P+E+ + + G+ I++ + ++++ TF Q
Sbjct: 401 KDVEKAFLALTGPLENIYSKLSNQKVLRVHILGLIATLEIKSTSELINFIKNTFYAHQ-- 458
Query: 883 NYYNLQGV 890
Y NL GV
Sbjct: 459 -YGNLHGV 465
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R+ VE+ F + ++V+ T L+ G+NLP II+ + Y+ + ++ L+I Q +
Sbjct: 322 RKAVEEGFRNKVIKVICCTPTLSAGLNLPCRRAIIRDIRRYS--QNGLIDIPKLEIHQCI 379
Query: 66 GRAGRPQYDSYGEGIII 82
GRAGRP D YGEGII+
Sbjct: 380 GRAGRPGLDPYGEGIIL 396
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 125/526 (23%), Positives = 236/526 (44%), Gaps = 70/526 (13%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534
PT SGKT+ AE A+ H+ + G + +YI P++ALA ++Y ++ K G ++G+ +
Sbjct: 47 PTASGKTLIAEMAM---HRHIANGG--KCLYIVPLKALASEKYEEFGNK-GVKVGLSTGD 100
Query: 535 LTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPV 593
L L K II++T EK D+L R +++ ++L +IDE+HLI GP
Sbjct: 101 LDRRD----DALGKNDIIVATSEKVDSLLRNGA--RWIPDITLVVIDEIHLIDSPDRGPT 154
Query: 594 LEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQ 653
LE+++A+MR ++++ LS ++ N K L W+ A RPV L
Sbjct: 155 LEMVIAKMR----SKNPGMQLIGLSATIGNPKVLAGWLDAEL-----VTSSWRPVDLR-- 203
Query: 654 IQGVDITN---FEARMKAMTKPT-----YTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705
QGV N F RM+ + + + + LVFV SR+ A A
Sbjct: 204 -QGVFYDNRIQFAERMRPVKQVSKNYDDLNLCLDTIAEGGQCLVFVSSRRNAEAFA-KRA 261
Query: 706 IYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765
+ K D +A C+ + +E + + + L A + G + H GL++ ++ +V F
Sbjct: 262 AGAIKSED--AALAACAERLLEGTPTEMV-KTLAACVAKGAAFHHAGLSRKERSIVEEAF 318
Query: 766 EAGKIKVCVMSSSMCWEVPLTA---------HLATGRKM--LILTTLLQMMGHAGRPLLD 814
+K + ++ + L A + G M + ++ QM G AGRP LD
Sbjct: 319 RKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEGMQPIPVSEYRQMAGRAGRPRLD 378
Query: 815 NSEKCVILCHAPHK--EYYKKFL-YEAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAV 869
+ V++ + E ++ ++ EA V S + L+ + + + +G + +
Sbjct: 379 PYGEAVLIAKEAEQVPELFEVYIEAEAEDVHSRIAEPTALYTHVLSLVASGFAGTRGELT 438
Query: 870 DYLTWTFRLTQNPNYYNLQG-VSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSN 928
+++ +F + ++ QG + HR + + L L+ T +++E + +
Sbjct: 439 EFMNRSFYVHEHK-----QGRLIHRAIDEALQFLI---------TAEMVVEVGEHIGATE 484
Query: 929 YGMIASYYYISYKTIECFSSSLTSKTKMK--GLLEVLASASEYAQL 972
G + S YI ++ ++L + K GL++++ + + L
Sbjct: 485 LGTLVSRMYIDPRSAFAIVTTLREQEKYADLGLIQLICTTPDMPTL 530
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+ R +R +VE+ F ++ + ST LA G+NLPA VII+ ++ +G + P+
Sbjct: 306 LSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEG----MQPIP 361
Query: 61 I---MQMLGRAGRPQYDSYGEGIIITGHSE 87
+ QM GRAGRP+ D YGE ++I +E
Sbjct: 362 VSEYRQMAGRAGRPRLDPYGEAVLIAKEAE 391
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 131/515 (25%), Positives = 218/515 (42%), Gaps = 47/515 (9%)
Query: 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514
P ++ I A L N +L ++ T SGKT+ AE A + N + +++ P++ALA
Sbjct: 28 PQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNVLVNDK----KSLVAVPLKALAF 83
Query: 515 QRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ 574
++ D+ ELG+ V T + + K L +II+T EK D+L R + ++
Sbjct: 84 EKLNDFNTY--SELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSLLRL--KPSWIWN 139
Query: 575 VSLFIIDELHLIG-GQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGA 633
V IIDE+H I + GP++E IVA++R + + I+ LS ++ N ++L W+ A
Sbjct: 140 VGQLIIDEIHFINDDERGPIIESIVAKLRMLNLNPQ----IIGLSATIGNPEELANWLNA 195
Query: 634 SSHGVFNFPPGVRPVPLEIQI--QGVD--ITNFEARMKAMTKPTYTAIMQHAKNEKPALV 689
RPV L + +GV + + E R+ + + LV
Sbjct: 196 KL-----VKSDWRPVSLREGVYHKGVVTYVNDGEKRISGQGDSLINLTVDTLNDGGQVLV 250
Query: 690 FVPSRKYARLTAVDLMIYSCKDS----DQKSAFLLCSAKEV-EPHVSIIQEEMLRATLRL 744
F SR+ A A L Y C D A L A+EV E S I E L ++
Sbjct: 251 FSSSRQGAVRIARKLAEYICSSPVRYIDPGEAGKL--AEEVRETSSSRILAEELTGLIKC 308
Query: 745 GVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLAT-----------GR 793
GV + H GL + V+ F G ++V ++++ V L A G
Sbjct: 309 GVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRRYEPGYGF 368
Query: 794 KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLH-DN 852
+ + QM G AGRP LD + +I+ + + Y Y P E +F++ +
Sbjct: 369 IEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSSKDEVDYVIDKYIKSPPEYVKSNFMNPTS 428
Query: 853 FNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQG-VSHRHLSDHLSELVENTISDLE 911
++ V + +D L + T N + QG +S ++ + ++ I +L
Sbjct: 429 LKFHTLSAVASQYAETIDELV---KFTSN-TFAGFQGKLSAMIQANSVRRMISRIIDELV 484
Query: 912 ATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECF 946
II D L + G + + Y+ T F
Sbjct: 485 DYGFIIRNGD-KLEATEVGAVVNRMYLDPDTAHVF 518
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R+++E+ F G ++VL ST LA GVNLPA VI+ + Y P G + E+ ++ QM
Sbjct: 322 RRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRRYEPGYG-FIEIPVMEYKQMA 380
Query: 66 GRAGRPQYDSYGEGIII-TGHSELQYYLSLMNQQLP--IESQFVS 107
GRAGRP D YGE III + E+ Y + + P ++S F++
Sbjct: 381 GRAGRPGLDPYGEAIIIVSSKDEVDYVIDKYIKSPPEYVKSNFMN 425
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 74/386 (19%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE--RKFGKELGMC 531
APTGSGKT A AI+ + RA RA Y+ P++++A ++Y + + G +L +
Sbjct: 50 APTGSGKTFIALVAIVNSLARAGG----RAFYLVPLKSVAYEKYTSFSILSRMGLKLKIS 105
Query: 532 VVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QG 590
V + + + ++I+T EK+D+L R + VS+ I+DE+H + +
Sbjct: 106 VGDFR-------EGPPEAPVVIATYEKFDSLLR--VSPSLARNVSVLIVDEIHSVSDPKR 156
Query: 591 GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGAS---------------- 634
GP+LE IV+RM +AS E ++ V LS ++ NA ++ EWIG
Sbjct: 157 GPILESIVSRM--LASAGEAQL--VGLSATVPNAGEIAEWIGGKIVESSWRPVPLREYVF 212
Query: 635 -SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPS 693
+ +++ G+R VP + +D+ + ++ ALVF
Sbjct: 213 KEYKLYSPTGGLREVPRVYGLYDLDLA-----------------AEAIEDGGQALVFT-- 253
Query: 694 RKYARLTAVDLMIYSCKD-----SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGY 748
Y+R AV L + K S +++ A E + EE L + + G+ Y
Sbjct: 254 --YSRRRAVTLAKRAAKRLGRRLSSREARVYSAEASRAEGAPRSVAEE-LASLIAAGIAY 310
Query: 749 LHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA----------HLATGRKMLIL 798
H GL S ++ V F AG +KV + ++ V L A + A R+ + +
Sbjct: 311 HHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVIDSYYRYEAGFREPIRV 370
Query: 799 TTLLQMMGHAGRPLLDNSEKCVILCH 824
QM G AGRP LD + +I+
Sbjct: 371 AEYKQMAGRAGRPGLDEFGEAIIVAE 396
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R+ VE+ F G V+V+ ST LA GVNLPA V+I Y E G + + QM
Sbjct: 320 RKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVID--SYYRYEAGFREPIRVAEYKQMA 377
Query: 66 GRAGRPQYDSYGEGIIIT 83
GRAGRP D +GE II+
Sbjct: 378 GRAGRPGLDEFGEAIIVA 395
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 120/480 (25%), Positives = 207/480 (43%), Gaps = 59/480 (12%)
Query: 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514
P + + A + + VL T SGK++ AE A ++ A G M A+Y P++ALA
Sbjct: 27 PQVEAVRAGIFDGRSVLLCTATASGKSLLAEVAAVK----AGLEGRM-ALYAVPLKALAY 81
Query: 515 QRYCDWERKFGKELGMCVVELTVETA---MDLKLLEKGQIIISTPEKWDALSRRWKQRKY 571
++ + G +V++ V T D + L + +++ T EK D+L R + +
Sbjct: 82 EKLVHFSYYRG------LVKVGVSTGDFDSDDRRLHEFDVVVVTYEKLDSLLR--HRPNW 133
Query: 572 VQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEW 630
+ V + ++DE+H +G + GPVLE IVA++R++ K + + LS ++ NA ++ W
Sbjct: 134 LGLVGVVVVDEIHYLGDPRRGPVLESIVAKLRHLGL----KTQFIGLSATVGNAGEVAAW 189
Query: 631 IGASSHGVFNFPPGVRPVPLEIQIQGVDITNF-EARMKAMTKPTYTAI---MQHAKNEKP 686
+GA RPVPL + + F + M+ + P + +
Sbjct: 190 LGARL-----VESSWRPVPLREGVYHGGVIRFSDGSMQRVNAPGDAEVALAVDAVAGGGQ 244
Query: 687 ALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHV------SIIQEEMLRA 740
ALVF SR ++ + + + + + + AK + V II E+
Sbjct: 245 ALVFTNSR-----SSTVRLAKAVAKAMEAAGLVPRGAKALAEEVLKASSSKIIGRELADL 299
Query: 741 TLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL----------- 789
R GV + + GL + +V F G +KV V ++++ V L A
Sbjct: 300 VAR-GVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDP 358
Query: 790 ATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFL 849
A GR+ + + QM G AGRP LD + V++ + + Y Y VE H L
Sbjct: 359 ALGREEIPVLEYRQMAGRAGRPGLDPYGEAVLVARSKGEAEYLMERYVRGQVEGVRSHIL 418
Query: 850 HD-NFNAEIV----AGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVE 904
+ N A ++ G ++ D VD+ + T Q L + + + ELVE
Sbjct: 419 AEPNLRAHVLGAVGGGYAKSLDDLVDFFSNTLGAAQMKTSLKLS-ILRSKIGGVVEELVE 477
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R+LVED F G ++V+VST LA GVNLPA V++ + ++P G E+ L+ QM
Sbjct: 316 RRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDPALGR-EEIPVLEYRQMA 374
Query: 66 GRAGRPQYDSYGEGIIIT-GHSELQYYL 92
GRAGRP D YGE +++ E +Y +
Sbjct: 375 GRAGRPGLDPYGEAVLVARSKGEAEYLM 402
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/465 (24%), Positives = 204/465 (43%), Gaps = 83/465 (17%)
Query: 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
APT +GKT+ AE IL+ R E +A++I P ++AK++ + F +E+G+ V
Sbjct: 115 APTSAGKTLVAELLILK---RVLEMR-KKALFILPFVSVAKEKKYYLQSLF-QEVGIKVD 169
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGP 592
T+ + I + T E+ + L R + + + + ++DELH++G G
Sbjct: 170 GYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 228
Query: 593 VLEVIVARMRYI-----------ASQVENKIRIVALSTSLANAKDLGEWIGAS-SHGVFN 640
+LE+++ ++ YI AS + N ++IV +S +L N + + W+ A H F
Sbjct: 229 LLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDF- 287
Query: 641 FPPGVRPVPLEIQIQGVDITN--FEARMKAMTKPTYTAIMQHAKNEK------------- 685
RPVPL ++ V + N +++ MK + + + ++Q +E
Sbjct: 288 -----RPVPL---LESVKVGNSIYDSSMKLVRE--FEPMLQVKGDEDHVVSLCYETICDN 337
Query: 686 -PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEM------- 737
L+F PS+K+ A D++ + ++ L+ ++ P V + Q+E+
Sbjct: 338 HSVLLFCPSKKWCEKLA-DIIAREFYNLHHQAEGLVKPSE--CPPVILEQKELLEVMDQL 394
Query: 738 ----------LRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA 787
L+ T+ GV + H GL +++++ F G I+V +S++ V L A
Sbjct: 395 RRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPA 454
Query: 788 H-------LATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAF- 839
+ GR + IL T QM+G AGR +D + +++C K L +
Sbjct: 455 RRVIIRTPIFGGRPLDIL-TYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLK 513
Query: 840 PVESHLHHFLHDNFNAE--------IVAGVIENKQDAVDYLTWTF 876
PV S L + IV GV QD Y TF
Sbjct: 514 PVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTF 558
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 21/149 (14%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIM-- 62
+R ++E F G ++VL +T+ L+ GVNLPA VII+ T ++ PLDI+
Sbjct: 424 ERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIR-TPIFGGR--------PLDILTY 474
Query: 63 -QMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQL-PIESQFVSKLAELLNA----- 115
QM+GRAGR D+ GE I+I +SE ++L+ L P+ S + E +
Sbjct: 475 KQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRA 534
Query: 116 --EIVLGTV-QNAKEACNWIEYTYLYTRM 141
EI++G V +++ + T+L M
Sbjct: 535 ILEIIVGGVASTSQDMHTYAACTFLAASM 563
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 49/363 (13%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGV-MRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533
PT SGKT+ E A++ + ++ + ++I P++ALA ++Y +++ K+ + G+ +
Sbjct: 40 PTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKSKYER-YGLRIA 98
Query: 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQR-KYVQQVSLFIIDELHLIGGQG-G 591
L++ + + L K +II+T EK D+L W+ + ++ VS+ ++DE+HLI + G
Sbjct: 99 -LSIGDYDEDEDLSKYHLIITTAEKLDSL---WRHKIDWINDVSVVVVDEIHLINDETRG 154
Query: 592 PVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLE 651
LE+++ +++ E ++I+ LS ++ N +L EW+ A RPV L+
Sbjct: 155 GTLEILLTKLK------EFNVQIIGLSATIGNPDELAEWLNAEL-----IVDDWRPVELK 203
Query: 652 IQI---QGVDITNFEAR-MKAM-TKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMI 706
I + ++ N E R +KA+ Y ++ K LVF +++ A A L +
Sbjct: 204 KGIYKNEAIEFINGEIREIKAVDNNDIYNLVVDCVKEGGCCLVFCNTKRNAVNEAKKLNL 263
Query: 707 YSCKDSDQKSAFLLCSAKEVEPHVSIIQE---EMLRATLRL---GVGYLHEGLNKSDQEV 760
++K KE+ + I E EM + G + H GL +++
Sbjct: 264 KKFLTEEEK-----IRLKEIAEEILSILEPPTEMCKTLAECILNGSAFHHAGLTYQHRKI 318
Query: 761 VSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCV 820
V F IKV + ++C L A+ T +LQ G L+ EK
Sbjct: 319 VEDAFRKRLIKVICCTPTLC----LNAN----------TEILQESGFRKITELNKDEKVF 364
Query: 821 ILC 823
LC
Sbjct: 365 ALC 367
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 30 GVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-- 87
G+NLP I+K + + + + ++I Q +GRAGRP D YGEGII+ +
Sbjct: 841 GLNLPCRRAIVKDLTRFTNKGMRYIPI--MEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898
Query: 88 LQYYLSLMNQQLPIESQF 105
L+ Y +L + PI S+
Sbjct: 899 LRAYQALTQKPEPIYSKL 916
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 137/575 (23%), Positives = 233/575 (40%), Gaps = 73/575 (12%)
Query: 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514
P + I L + +L PT SGKT+ AE A+L++ +E G +A+YI P++ALA
Sbjct: 27 PQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKS---IAEGG--KAIYIVPLKALAS 81
Query: 515 Q---RYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKY 571
+ R+ ++ + K G+ V T + + L + II++T EK D+L R +
Sbjct: 82 EKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSLLRNGAS--W 139
Query: 572 VQQVSLFIIDELHLIGGQG-GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEW 630
+ +S+ + DE+HLI GP LEV +A++R ++ ++I+ALS ++ NAK L +W
Sbjct: 140 LSGLSVVVADEVHLIDSPNRGPTLEVTLAKLR----KINVNLQILALSATIGNAKALAKW 195
Query: 631 IGASSHGVFNFPPGVRPVPL-EIQIQGVDIT-NFEARMKAMTKP--TYTAIMQHAKNEKP 686
+ A+ RP L E G IT E R P + + +
Sbjct: 196 MDAAL-----VQSEWRPTTLKEGVFYGRAITFKKEKRTVNNAGPDEVNSLVADTLEEGGQ 250
Query: 687 ALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAK-EVEPHVSIIQEEMLRATLRLG 745
LVF +RK + A + K L K +V H E L + G
Sbjct: 251 CLVFANTRKSSESIAQKVARSLSKKLQPAEKEQLAKLKQDVLRHAETDTCEKLAECVGNG 310
Query: 746 VGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAH-----------LATGRK 794
V + H GL + +V F +KV + ++ + L A + G
Sbjct: 311 VAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPARRVIIRDYKRFDVNYGSV 370
Query: 795 MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF--LYEAFPVESHLHHF---- 848
+ + QM G AGRP LD + V++ + Y +F L E + + + H
Sbjct: 371 PIPVLEYKQMAGRAGRPRLDPYGEAVLIA-----KNYDEFGELMENY-INADPEHITSKL 424
Query: 849 -----LHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELV 903
+ + + + ++QD ++ TF Q + LS ++
Sbjct: 425 GTEPAMRAHALSAVATDFCRSRQDLKAFMDTTFFAYQRGD---------------LSHVI 469
Query: 904 ENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMK-----G 958
+N ++ L II L ++ G + S YI + + L K G
Sbjct: 470 DNVLNFLLEENMIIESKGGSLKATDLGSLVSKLYIDPLSAALIAEGLEKAKKRPDVAEFG 529
Query: 959 LLEVLASASEYAQLPIRPGEEELVRRLINHQRFSF 993
LL ++ S + L +R G+ + R + F
Sbjct: 530 LLHLICSTPDVKSLYLRRGDYSWIIRYADEHASDF 564
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
+K R++VED F ++V+ T LA G+NLPA VII+ + ++ G+ + L+
Sbjct: 318 LKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPARRVIIRDYKRFDVNYGS-VPIPVLE 376
Query: 61 IMQMLGRAGRPQYDSYGEGIIIT 83
QM GRAGRP+ D YGE ++I
Sbjct: 377 YKQMAGRAGRPRLDPYGEAVLIA 399
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 170/409 (41%), Gaps = 51/409 (12%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534
PT GKT+ AE +L+ + +M Y+A + Q FG ELG V E
Sbjct: 319 PTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIV-----QEKISSLSSFGIELGFFVEE 373
Query: 535 LTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGG 591
+K EK + I+T EK +L + + + L ++DELH+IG G G
Sbjct: 374 YAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMIGEGSRG 433
Query: 592 PVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPL- 650
+LE+ +A++ Y + + I+ +S +L N +DL ++ A + RPV L
Sbjct: 434 AILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAEY-----YTSQFRPVELK 484
Query: 651 ----------EIQIQGVDITNF--------EARMKAMTKPTYTAIMQHAKNEKPALVFVP 692
E+ Q D F +K M A++ LVF P
Sbjct: 485 EFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNYSCLVFCP 544
Query: 693 SRKYARLTAVDLMIYSCKD----SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGY 748
S+K A L + KD +++ ++ S + + +L+ T+ G+ Y
Sbjct: 545 SKKNCENVAEMLCKFLSKDYLNHREKEKCEVIKSLRNIGNGKVC---PVLKRTVPFGIAY 601
Query: 749 LHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL------ 802
H GL +++++ + G + + +S++ V L A R + T L
Sbjct: 602 HHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQYK 661
Query: 803 QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
QM+G AGR +D + + ++L K+ + + + P+E+ H + +
Sbjct: 662 QMVGRAGRAGIDTAGESILLLQEKDKQQVLELI--SGPLETCCSHLVEE 708
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+L+E+ + G + +L T+ LA GVNLPA VI++ V N T L QM
Sbjct: 610 ERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVAN------TFLKRNQYKQM 663
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIES 103
+GRAGR D+ GE I++ + Q L L++ P+E+
Sbjct: 664 VGRAGRAGIDTAGESILLLQEKDKQQVLELISG--PLET 700
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/410 (22%), Positives = 173/410 (42%), Gaps = 53/410 (12%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534
PT GKT+ AE +L+ + +M Y+A + Q FG ELG V E
Sbjct: 360 PTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIV-----QEKISGLSSFGIELGFFVEE 414
Query: 535 LTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGG 591
K EK + I+T EK +L + + + L ++DELH+IG G G
Sbjct: 415 YAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRG 474
Query: 592 PVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLE 651
LE+ +A++ Y + + I+ +S +L N +DL +++ A + RPV L+
Sbjct: 475 ATLEMTLAKILYTSKTTQ----IIGMSATLNNVEDLQKFLQAEY-----YTSQFRPVELK 525
Query: 652 IQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEK--------------------PALVFV 691
++ ++ T +E KA T++ ++ + ++ LVF
Sbjct: 526 EYLK-INDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFC 584
Query: 692 PSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE----EMLRATLRLGVG 747
PS+K A + + K+ + C EV ++ I +L+ T+ GV
Sbjct: 585 PSKKNCENVAEMICKFLSKEYLKHKEKEKC---EVIKNLKNIGNGNLCPVLKRTIPFGVA 641
Query: 748 YLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLL----- 802
Y H GL +++++ + G + + +S++ V L A R + L
Sbjct: 642 YHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQY 701
Query: 803 -QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHD 851
QM+G AGR +D + +++ K+ + + + P+E+ H + +
Sbjct: 702 KQMIGRAGRAGIDTIGESILILQEKDKQQVLELITK--PLENCYSHLVQE 749
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64
+R+L+E+ + G + + T+ LA GVNLPA VI++ V A L QM
Sbjct: 651 ERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQM 704
Query: 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQF 105
+GRAGR D+ GE I+I + Q L L+ + P+E+ +
Sbjct: 705 IGRAGRAGIDTIGESILILQEKDKQQVLELITK--PLENCY 743
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/432 (23%), Positives = 179/432 (41%), Gaps = 68/432 (15%)
Query: 475 PTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534
PT SGKT+ A L+ E G R +Y P+ ++ ++ ++ + + E
Sbjct: 46 PTASGKTLLGIIAALKT---VMEGG--RVIYTVPLLSIQNEKIKEFRK---------LEE 91
Query: 535 LTVETAMDLKLLEKGQIIISTPEKWDALSR-RWKQRKYVQQVSLFIIDELHLIGG-QGGP 592
+ D + I + E +D+L+R W +++V L I+DE H+IG GP
Sbjct: 92 HGIRVGKDPR---TSDIAVMVFESFDSLTRFSWN---ILREVDLLIVDEFHMIGEYTRGP 145
Query: 593 VLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEI 652
V+E + R R + V RIVALS +L+N ++ W+ A RPVPL
Sbjct: 146 VIESAITRARTLNPSV----RIVALSATLSNMDEIAGWLDARV-----VEHDYRPVPLHR 196
Query: 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM--IYSCK 710
++ +D F R K + + ++ L FV +R++ A L I
Sbjct: 197 EV--LDTEMFGVREK--NDVVLKVLERSLEDGSQTLAFVSTRRFTESLASHLADKISGKI 252
Query: 711 DSDQKSAFLLCSAKEVE--------PHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVS 762
D +F + K +E P + ++ L L G+ + H GL +E++
Sbjct: 253 PDDMVESFREVAGKVLEVPKSRGSPPTSTCLK---LAECLEAGIAFHHAGLFNRQREIIE 309
Query: 763 TLFEAGKIKVCVMSSSMCWEVPL----------TAHLATGRKMLILTTLLQMMGHAGRPL 812
F G I + + S+ + V L T + G + + + QM G AGRP
Sbjct: 310 DEFRDGNILMITATPSLMYGVNLPSRTVVIRDYTRWTSQGPRRIPVFDYEQMSGRAGRPQ 369
Query: 813 LDNSEKCVILCHAPH-----KEYYKKFLYE---AFPVESHLHHFLHDNFNAEIVAGVIEN 864
D++ ++ + +EYY + E + +E+ L+ A++ +G+
Sbjct: 370 YDDAGYSYLIARSHDEAMDLEEYYIRGEVERTTSRIIEN--RDALYRQIIAQVASGLSGT 427
Query: 865 KQDAVDYLTWTF 876
++ D+ TF
Sbjct: 428 TEELADFFRNTF 439
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 22/153 (14%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSP-----LD 60
R+++ED F DG++ ++ +T +L +GVNLP+ TV+I+ + WT P D
Sbjct: 305 REIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIR-------DYTRWTSQGPRRIPVFD 357
Query: 61 IMQMLGRAGRPQYDSYGEGIIIT-GHSEL----QYYLSLMNQQLP---IESQFVSKLAEL 112
QM GRAGRPQYD G +I H E +YY+ ++ IE++ L
Sbjct: 358 YEQMSGRAGRPQYDDAGYSYLIARSHDEAMDLEEYYIRGEVERTTSRIIENR--DALYRQ 415
Query: 113 LNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNP 145
+ A++ G +E ++ T+ +M+ P
Sbjct: 416 IIAQVASGLSGTTEELADFFRNTFYGYQMVEGP 448
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/521 (20%), Positives = 198/521 (38%), Gaps = 114/521 (21%)
Query: 457 KQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQR 516
+QR +AL VL APTG+GKT+ EFA+ S + Y P++AL+ Q+
Sbjct: 22 QQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS-----KCFYTTPLKALSNQK 76
Query: 517 YCDWERKFGKE-LGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQV 575
+ D ++G++ +G+ +L+V +++ T E + + +Q +
Sbjct: 77 HTDLTARYGRDQIGLLTGDLSVNG--------NAPVVVMTTEVLRNML--YADSPALQGL 126
Query: 576 SLFIIDELHLIGGQ-GGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGAS 634
S ++DE+H + + GPV E ++ Q+ + +R+V+LS +++NA++ G WI
Sbjct: 127 SYVVMDEVHFLADRMRGPVWEEVIL-------QLPDDVRVVSLSATVSNAEEFGGWIQTV 179
Query: 635 SHGVFNFPPGVRPVPL---------------------EIQIQ--------------GVDI 659
RPVPL E Q Q +
Sbjct: 180 RGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRM 239
Query: 660 TNFEARMKAMTKPTY--------TAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKD 711
+++ R + +P + A+ PA+ FV SR D + C
Sbjct: 240 ADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSR-----AGCDAAVTQC-- 292
Query: 712 SDQKSAFLLCSAKE---------------VEPHVSIIQEEMLRATLRLGVGYLHEGLNKS 756
+S L S +E + ++++ R L G+ H G+ +
Sbjct: 293 --LRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPA 350
Query: 757 DQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNS 816
+ V LF AG +K + ++ + + A + ++L L++ N
Sbjct: 351 FRHTVEELFTAGLVKAVFATETLALGINMPA------RTVVLERLVKF----------NG 394
Query: 817 EKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF 876
E+ + L + + + VE H H VAG+ + T+
Sbjct: 395 EQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTR-------TFPL 447
Query: 877 RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSII 917
R + P+Y + HR L+E + + +A RS++
Sbjct: 448 RSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQYQADRSVV 488
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
R VE+LF G V+ + +T LA G+N+PA TV+++ +N E+ L+P + Q+
Sbjct: 352 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQ--HMPLTPGEYTQLT 409
Query: 66 GRAGRPQYDSYGEGIIITGHSELQ 89
GRAGR D G ++I H E++
Sbjct: 410 GRAGRRGIDVEGHAVVIW-HPEIE 432
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 164/415 (39%), Gaps = 84/415 (20%)
Query: 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529
V A T +GKT+ AE+AI ++ + R +Y +PI+AL+ Q++ D+ FG ++G
Sbjct: 328 VFVAAHTSAGKTVVAEYAIA-----LAQKHMTRTIYTSPIKALSNQKFRDFRNTFG-DVG 381
Query: 530 MCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG- 588
+ D++L + +I T E ++ + ++ + I DE+H I
Sbjct: 382 LLT--------GDVQLHPEASCLIMTTEILRSM--LYSGSDVIRDLEWVIFDEVHYINDV 431
Query: 589 QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGA-SSHGVFNFPPGVRP 647
+ G V E ++ + + + I+ LS ++ NA + +WIG ++ RP
Sbjct: 432 ERGVVWEEVLIML-------PDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRP 484
Query: 648 VPLE--------IQIQGVDITNFEARMKAMTKPTYTAI-------MQHAKN--------- 683
VPLE + QG ++R TK Y A+ +HA+
Sbjct: 485 VPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTHQ 544
Query: 684 ---------------------EKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLL-- 720
+ P +VF SR A L S +KS L
Sbjct: 545 GGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFL 604
Query: 721 --CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778
C A+ + Q + L G+G H G+ +E+V LF G +KV + +
Sbjct: 605 QRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATET 664
Query: 779 MCWEVPLTA----------HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILC 823
V + A H + + L+ +QM G AGR LD + ++LC
Sbjct: 665 FAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC 719
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQML 65
+++VE LF G V+VL +T A GVN+PA TV+ + ++ + +L P + +QM
Sbjct: 644 KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHD--GSTFRDLLPGEYVQMA 701
Query: 66 GRAGRPQYDSYGEGIII 82
GRAGR D G I++
Sbjct: 702 GRAGRRGLDPTGTVILL 718
>sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1
SV=2
Length = 760
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 111/250 (44%), Gaps = 38/250 (15%)
Query: 935 YYYISYKTIECFSSSLTSKTKMKGLLEVLASASEY-----AQLPIRPGEEELVRRLINHQ 989
Y Y YKT MK L+ VLA ASE+ RP + L+ +LI
Sbjct: 231 YTYFVYKT---------RNMDMKRLIMVLAGASEFDPQYNKDATSRPTDNILIPQLIREI 281
Query: 990 ---RFSFANPKCTDPH-VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVIS 1045
P T P+ +KA LL +H + + L+ DQ+ +L LLQ MV+VI
Sbjct: 282 GSINLKKNEPPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVIC 341
Query: 1046 SNGWL------------SLALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQEN 1091
+ +LA L M++SQM QG+ + S LLQLPH +D +R +
Sbjct: 342 QLIVMARNREEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNH 401
Query: 1092 PGRSIETVFDLLEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSYKVQ-----DSEN 1145
I+T+ DL+ +++ +R LL + D + ++ FP + M K Q DS N
Sbjct: 402 KKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNN 461
Query: 1146 VRAGGEDTTL 1155
+ G T L
Sbjct: 462 ITVGSLVTVL 471
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+++ +L+ +L F AP + G YT+
Sbjct: 637 PVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTV 696
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
DSYMG DQ ++V EA
Sbjct: 697 FLRSDSYMGLDQIKPLKLEVHEA 719
>sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2
SV=1
Length = 761
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 111/250 (44%), Gaps = 38/250 (15%)
Query: 935 YYYISYKTIECFSSSLTSKTKMKGLLEVLASASEY-----AQLPIRPGEEELVRRLINHQ 989
Y Y YKT MK L+ VLA ASE+ RP + L+ +LI
Sbjct: 231 YTYFVYKT---------RNMDMKRLIMVLAGASEFDPQYNKDATSRPTDNILIPQLIREI 281
Query: 990 ---RFSFANPKCTDPH-VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVIS 1045
P T P+ +KA LL +H + + L+ DQ+ +L LLQ MV+VI
Sbjct: 282 GSINLKKNEPPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVIC 341
Query: 1046 SNGWL------------SLALL--AMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQEN 1091
+ +LA L M++SQM QG+ + S LLQLPH +D +R +
Sbjct: 342 QLIVMARNREEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNH 401
Query: 1092 PGRSIETVFDLLEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSYKVQ-----DSEN 1145
I+T+ DL+ +++ +R LL + D + ++ FP + M K Q DS N
Sbjct: 402 KKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNN 461
Query: 1146 VRAGGEDTTL 1155
+ G T L
Sbjct: 462 ITVGSLVTVL 471
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 1171 PVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKR--VSLQRKSRAKLDFAAPVEGGKKTYTL 1228
PVYS +P+ K+E WWL + D K L+++ +L+ +L F AP + G YT+
Sbjct: 638 PVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTV 697
Query: 1229 DFMCDSYMGCDQEYSFTVDVKEA 1251
DSYMG DQ ++V EA
Sbjct: 698 FLRSDSYMGLDQIKPLKLEVHEA 720
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,247,572
Number of Sequences: 539616
Number of extensions: 19024649
Number of successful extensions: 50556
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 49745
Number of HSP's gapped (non-prelim): 356
length of query: 1254
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1125
effective length of database: 121,958,995
effective search space: 137203869375
effective search space used: 137203869375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)