Query 000849
Match_columns 1254
No_of_seqs 836 out of 5610
Neff 8.9
Searched_HMMs 46136
Date Tue Apr 2 00:30:09 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951 RNA helicase BRR2, DEA 100.0 5E-152 1E-156 1339.0 61.1 879 1-958 617-1625(1674)
2 KOG0952 DNA/RNA helicase MER3/ 100.0 7E-109 1E-113 966.3 32.9 717 1-761 406-1229(1230)
3 KOG0952 DNA/RNA helicase MER3/ 100.0 2E-103 4E-108 920.7 51.8 786 383-1247 75-891 (1230)
4 KOG0951 RNA helicase BRR2, DEA 100.0 8E-103 2E-107 922.1 53.7 795 392-1247 286-1107(1674)
5 PRK02362 ski2-like helicase; P 100.0 2.8E-85 6.1E-90 828.7 55.8 640 419-1131 21-706 (737)
6 PRK00254 ski2-like helicase; P 100.0 2.3E-82 5E-87 800.2 54.5 636 419-1131 21-701 (720)
7 PRK01172 ski2-like helicase; P 100.0 3.8E-79 8.2E-84 768.7 60.4 626 421-1131 22-668 (674)
8 COG1204 Superfamily II helicas 100.0 9.1E-67 2E-71 640.4 40.2 661 411-1129 19-730 (766)
9 smart00611 SEC63 Domain of unk 100.0 9.3E-51 2E-55 465.6 37.8 307 924-1247 2-312 (312)
10 PF02889 Sec63: Sec63 Brl doma 100.0 2.3E-50 5.1E-55 463.5 33.4 308 926-1246 1-314 (314)
11 COG1202 Superfamily II helicas 100.0 4.2E-49 9.1E-54 435.6 39.3 545 410-1064 203-827 (830)
12 KOG0950 DNA polymerase theta/e 100.0 1.3E-42 2.8E-47 408.7 35.8 640 419-1115 221-934 (1008)
13 KOG0330 ATP-dependent RNA heli 100.0 2E-43 4.4E-48 375.5 22.0 341 397-834 66-415 (476)
14 TIGR03817 DECH_helic helicase/ 100.0 5.1E-42 1.1E-46 428.5 37.2 342 419-827 34-387 (742)
15 PRK13767 ATP-dependent helicas 100.0 7.9E-42 1.7E-46 435.6 39.2 402 409-876 19-455 (876)
16 COG1201 Lhr Lhr-like helicases 100.0 2E-41 4.3E-46 409.1 34.2 420 409-922 9-450 (814)
17 KOG0331 ATP-dependent RNA heli 100.0 7.5E-42 1.6E-46 391.0 26.0 330 419-832 111-454 (519)
18 PRK09751 putative ATP-dependen 100.0 8.1E-40 1.7E-44 419.7 39.7 392 472-876 1-442 (1490)
19 KOG0338 ATP-dependent RNA heli 100.0 2.1E-41 4.5E-46 370.2 21.1 344 419-845 201-552 (691)
20 KOG0947 Cytoplasmic exosomal R 100.0 1.9E-40 4.1E-45 385.7 29.3 396 445-876 290-771 (1248)
21 PTZ00110 helicase; Provisional 100.0 1E-39 2.3E-44 397.2 34.0 332 419-834 150-492 (545)
22 KOG4434 Molecular chaperone SE 100.0 3.1E-40 6.7E-45 344.6 24.8 301 950-1253 7-484 (520)
23 PRK10590 ATP-dependent RNA hel 100.0 3.9E-40 8.4E-45 395.9 29.2 329 419-833 21-359 (456)
24 PLN00206 DEAD-box ATP-dependen 100.0 3.7E-40 8E-45 400.4 28.6 332 419-835 141-484 (518)
25 PRK11776 ATP-dependent RNA hel 100.0 6.6E-40 1.4E-44 396.1 29.3 325 419-832 24-355 (460)
26 PRK02362 ski2-like helicase; P 100.0 2.1E-40 4.6E-45 419.8 24.6 285 1-305 313-674 (737)
27 KOG0948 Nuclear exosomal RNA h 100.0 6.7E-40 1.4E-44 372.2 25.0 382 447-855 124-570 (1041)
28 PRK04537 ATP-dependent RNA hel 100.0 2.7E-39 6E-44 394.5 32.2 327 419-830 29-368 (572)
29 COG0513 SrmB Superfamily II DN 100.0 2.3E-39 4.9E-44 390.2 30.6 327 419-832 49-387 (513)
30 PRK04837 ATP-dependent RNA hel 100.0 6.3E-40 1.4E-44 391.9 25.4 326 419-833 28-369 (423)
31 PRK11634 ATP-dependent RNA hel 100.0 7.9E-39 1.7E-43 392.1 33.0 327 419-833 26-359 (629)
32 PRK11192 ATP-dependent RNA hel 100.0 6.1E-39 1.3E-43 385.5 30.4 343 397-833 6-359 (434)
33 PRK01297 ATP-dependent RNA hel 100.0 1.3E-38 2.7E-43 385.7 30.6 324 419-829 107-445 (475)
34 KOG0345 ATP-dependent RNA heli 100.0 1.4E-38 3E-43 346.3 27.4 336 419-836 26-373 (567)
35 KOG0340 ATP-dependent RNA heli 100.0 5.4E-39 1.2E-43 337.9 21.4 348 392-833 7-368 (442)
36 KOG0342 ATP-dependent RNA heli 100.0 1.7E-38 3.6E-43 348.8 24.9 336 419-834 102-445 (543)
37 TIGR00614 recQ_fam ATP-depende 100.0 3.5E-38 7.5E-43 380.0 30.1 331 412-837 3-344 (470)
38 PTZ00424 helicase 45; Provisio 100.0 4.5E-38 9.7E-43 375.6 30.8 335 412-834 40-382 (401)
39 KOG0326 ATP-dependent RNA heli 100.0 1.1E-38 2.3E-43 329.9 18.5 347 410-847 95-454 (459)
40 KOG0348 ATP-dependent RNA heli 100.0 2.9E-38 6.3E-43 347.6 22.6 380 397-836 141-563 (708)
41 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.9E-37 1.3E-41 381.5 37.3 412 455-964 5-439 (819)
42 PLN03137 ATP-dependent DNA hel 100.0 8.3E-38 1.8E-42 383.8 29.0 333 411-838 451-799 (1195)
43 KOG0328 Predicted ATP-dependen 100.0 6.2E-38 1.3E-42 319.2 22.1 341 406-833 33-380 (400)
44 PRK11664 ATP-dependent RNA hel 100.0 1.2E-36 2.6E-41 380.0 38.5 402 456-952 9-431 (812)
45 KOG0343 RNA Helicase [RNA proc 100.0 1.6E-37 3.4E-42 342.7 25.5 341 419-842 89-439 (758)
46 KOG0333 U5 snRNP-like RNA heli 100.0 1E-37 2.2E-42 343.0 23.6 331 419-831 265-629 (673)
47 PRK00254 ski2-like helicase; P 100.0 8.9E-38 1.9E-42 395.0 24.3 286 1-305 305-667 (720)
48 PRK10917 ATP-dependent DNA hel 100.0 5.6E-36 1.2E-40 373.4 39.6 323 439-826 248-589 (681)
49 COG4581 Superfamily II RNA hel 100.0 5.8E-37 1.3E-41 374.5 27.8 379 445-850 112-564 (1041)
50 KOG0923 mRNA splicing factor A 100.0 2E-35 4.4E-40 332.1 34.2 443 454-985 267-731 (902)
51 PRK11057 ATP-dependent DNA hel 100.0 6.5E-36 1.4E-40 369.2 31.1 328 410-838 15-355 (607)
52 KOG0922 DEAH-box RNA helicase 100.0 3.9E-35 8.4E-40 335.8 34.6 434 456-979 55-508 (674)
53 PRK11131 ATP-dependent RNA hel 100.0 5.2E-35 1.1E-39 368.8 39.1 437 455-981 77-535 (1294)
54 TIGR01389 recQ ATP-dependent D 100.0 4.8E-36 1E-40 372.3 28.7 332 411-841 4-346 (591)
55 KOG0339 ATP-dependent RNA heli 100.0 8.7E-36 1.9E-40 325.5 25.1 333 419-836 243-585 (731)
56 PRK01172 ski2-like helicase; P 100.0 3.2E-36 7E-41 379.6 24.2 279 1-305 295-634 (674)
57 KOG0335 ATP-dependent RNA heli 100.0 3.5E-36 7.5E-41 338.0 19.3 328 419-829 94-447 (482)
58 KOG0336 ATP-dependent RNA heli 100.0 4.5E-36 9.7E-41 319.5 17.3 328 419-836 240-582 (629)
59 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6.9E-34 1.5E-38 360.3 38.2 431 456-980 71-525 (1283)
60 COG1200 RecG RecG-like helicas 100.0 7.5E-34 1.6E-38 329.3 33.4 325 439-827 249-592 (677)
61 TIGR00580 mfd transcription-re 100.0 2.4E-33 5.1E-38 352.7 40.4 317 438-826 437-770 (926)
62 TIGR00643 recG ATP-dependent D 100.0 5.1E-34 1.1E-38 353.9 33.0 326 439-825 222-565 (630)
63 KOG0350 DEAD-box ATP-dependent 100.0 2E-34 4.3E-39 315.8 24.3 349 419-836 157-550 (620)
64 KOG0332 ATP-dependent RNA heli 100.0 8E-34 1.7E-38 300.5 26.9 332 412-827 102-444 (477)
65 KOG0347 RNA helicase [RNA proc 100.0 7.3E-35 1.6E-39 321.8 19.3 341 419-835 201-579 (731)
66 COG1204 Superfamily II helicas 100.0 5E-36 1.1E-40 369.1 7.5 346 1-360 324-764 (766)
67 KOG0924 mRNA splicing factor A 100.0 6.9E-33 1.5E-37 311.7 30.4 516 456-1069 360-903 (1042)
68 PRK10689 transcription-repair 100.0 9.3E-33 2E-37 354.7 33.6 317 438-826 586-919 (1147)
69 COG1643 HrpA HrpA-like helicas 100.0 3E-32 6.4E-37 332.7 36.2 420 455-967 53-494 (845)
70 KOG0341 DEAD-box protein abstr 100.0 2.1E-34 4.6E-39 304.7 14.5 322 419-828 190-530 (610)
71 KOG0346 RNA helicase [RNA proc 100.0 1.7E-33 3.6E-38 303.8 21.6 345 394-829 21-413 (569)
72 COG0514 RecQ Superfamily II DN 100.0 1.2E-32 2.7E-37 321.6 29.5 330 411-840 8-351 (590)
73 COG1205 Distinct helicase fami 100.0 7.8E-32 1.7E-36 337.0 30.5 352 442-826 60-422 (851)
74 PHA02653 RNA helicase NPH-II; 100.0 2E-31 4.3E-36 324.3 32.7 391 455-948 167-592 (675)
75 KOG4284 DEAD box protein [Tran 100.0 2.4E-32 5.3E-37 305.9 20.8 329 419-828 45-381 (980)
76 KOG0344 ATP-dependent RNA heli 100.0 4.4E-32 9.6E-37 305.9 18.7 330 419-832 156-501 (593)
77 KOG0334 RNA helicase [RNA proc 100.0 2.3E-31 4.9E-36 318.9 24.6 358 419-860 385-757 (997)
78 TIGR01587 cas3_core CRISPR-ass 100.0 1.1E-30 2.5E-35 306.4 25.1 304 469-827 1-337 (358)
79 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.6E-30 7.8E-35 313.7 28.8 325 412-822 4-388 (844)
80 KOG0337 ATP-dependent RNA heli 100.0 1.7E-31 3.8E-36 287.1 12.6 335 410-833 31-375 (529)
81 KOG0920 ATP-dependent RNA heli 100.0 3.9E-30 8.5E-35 311.7 25.8 446 447-974 170-659 (924)
82 TIGR03158 cas3_cyano CRISPR-as 100.0 5.8E-30 1.2E-34 296.4 24.6 300 425-809 1-357 (357)
83 KOG0327 Translation initiation 100.0 1.9E-30 4.1E-35 278.9 18.8 335 410-834 36-378 (397)
84 COG1111 MPH1 ERCC4-like helica 100.0 4.9E-29 1.1E-33 277.0 28.2 333 419-826 13-481 (542)
85 KOG0925 mRNA splicing factor A 100.0 9.3E-28 2E-32 261.9 28.7 431 453-977 48-503 (699)
86 KOG0926 DEAH-box RNA helicase 100.0 1.8E-28 4E-33 280.8 22.1 435 457-953 261-798 (1172)
87 KOG0352 ATP-dependent DNA heli 100.0 1.4E-28 3E-33 264.1 19.1 328 411-835 10-371 (641)
88 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-27 2.4E-32 290.1 27.2 310 452-822 114-449 (501)
89 KOG0351 ATP-dependent DNA heli 100.0 3.8E-28 8.3E-33 300.5 21.1 333 412-838 256-604 (941)
90 KOG0949 Predicted helicase, DE 100.0 2.1E-27 4.5E-32 277.7 24.9 374 450-837 509-1057(1330)
91 COG1197 Mfd Transcription-repa 100.0 9.7E-27 2.1E-31 284.9 28.2 319 438-827 580-914 (1139)
92 KOG0354 DEAD-box like helicase 100.0 1.1E-26 2.5E-31 274.0 27.6 338 419-828 60-531 (746)
93 PRK05580 primosome assembly pr 100.0 7.9E-27 1.7E-31 289.9 27.1 360 448-834 140-557 (679)
94 PRK13766 Hef nuclease; Provisi 99.9 5.7E-25 1.2E-29 283.2 34.2 324 452-827 15-480 (773)
95 KOG0353 ATP-dependent DNA heli 99.9 9.2E-26 2E-30 238.3 19.0 326 410-827 84-468 (695)
96 TIGR00595 priA primosomal prot 99.9 1.1E-25 2.4E-30 269.8 22.4 333 472-834 2-389 (505)
97 PRK09694 helicase Cas3; Provis 99.9 8.1E-25 1.8E-29 272.6 30.4 312 452-813 286-664 (878)
98 PRK14701 reverse gyrase; Provi 99.9 2.3E-25 4.9E-30 292.8 24.8 327 448-837 75-467 (1638)
99 PRK12898 secA preprotein trans 99.9 1.1E-24 2.3E-29 260.8 26.0 324 448-827 99-587 (656)
100 TIGR00603 rad25 DNA repair hel 99.9 1.9E-24 4E-29 261.6 26.4 314 421-829 255-610 (732)
101 PRK09401 reverse gyrase; Revie 99.9 1.8E-24 3.9E-29 279.2 27.6 295 448-810 76-430 (1176)
102 PRK09200 preprotein translocas 99.9 3.9E-24 8.4E-29 261.5 27.0 324 448-827 74-542 (790)
103 smart00611 SEC63 Domain of unk 99.9 1.5E-24 3.2E-29 248.9 20.7 187 193-379 55-288 (312)
104 TIGR03714 secA2 accessory Sec 99.9 1.1E-23 2.4E-28 254.7 28.3 320 453-827 69-538 (762)
105 TIGR00963 secA preprotein tran 99.9 3.7E-23 7.9E-28 248.4 30.7 325 447-827 51-518 (745)
106 COG4098 comFA Superfamily II D 99.9 2.1E-22 4.5E-27 212.4 27.3 298 464-828 113-418 (441)
107 KOG0329 ATP-dependent RNA heli 99.9 3.9E-24 8.4E-29 215.5 12.7 291 419-830 62-359 (387)
108 KOG0950 DNA polymerase theta/e 99.9 1.2E-23 2.7E-28 249.2 12.9 294 1-305 532-916 (1008)
109 TIGR01054 rgy reverse gyrase. 99.9 4.8E-22 1E-26 257.3 27.6 283 448-795 74-408 (1171)
110 COG1061 SSL2 DNA or RNA helica 99.9 6.8E-22 1.5E-26 234.7 26.5 296 451-812 35-377 (442)
111 KOG0349 Putative DEAD-box RNA 99.9 2.2E-22 4.8E-27 216.5 12.3 286 501-826 287-615 (725)
112 PF02889 Sec63: Sec63 Brl doma 99.9 1.7E-21 3.6E-26 224.2 16.1 184 193-376 52-286 (314)
113 PRK11448 hsdR type I restricti 99.9 6.1E-20 1.3E-24 236.1 30.1 337 451-824 412-814 (1123)
114 PRK04914 ATP-dependent helicas 99.9 1.9E-19 4.1E-24 226.2 32.3 338 450-837 150-617 (956)
115 COG1198 PriA Primosomal protei 99.8 1E-20 2.2E-25 228.7 18.4 359 420-836 197-613 (730)
116 COG1203 CRISPR-associated heli 99.8 3.4E-20 7.3E-25 233.2 21.5 312 469-828 216-552 (733)
117 PRK13104 secA preprotein trans 99.8 2.7E-19 5.9E-24 218.0 28.0 115 467-587 95-215 (896)
118 PRK12906 secA preprotein trans 99.8 8.8E-19 1.9E-23 212.8 25.4 329 447-827 75-554 (796)
119 PRK12904 preprotein translocas 99.8 3.9E-18 8.5E-23 208.1 28.2 112 470-587 97-214 (830)
120 PF00270 DEAD: DEAD/DEAH box h 99.8 3E-19 6.4E-24 186.1 12.9 157 455-622 2-163 (169)
121 cd00268 DEADc DEAD-box helicas 99.8 3.2E-18 6.8E-23 184.1 17.1 165 419-624 19-187 (203)
122 PRK13107 preprotein translocas 99.8 1.8E-17 3.9E-22 201.4 25.2 122 461-588 89-216 (908)
123 TIGR01407 dinG_rel DnaQ family 99.8 9.3E-17 2E-21 206.7 29.8 190 612-840 596-829 (850)
124 PRK12899 secA preprotein trans 99.8 1.3E-16 2.9E-21 194.0 28.1 133 449-587 89-228 (970)
125 KOG0947 Cytoplasmic exosomal R 99.7 6.3E-18 1.4E-22 198.9 12.1 130 1-137 640-772 (1248)
126 KOG4150 Predicted ATP-dependen 99.7 1.2E-16 2.6E-21 177.8 18.5 329 456-814 290-630 (1034)
127 COG4096 HsdR Type I site-speci 99.7 1.6E-15 3.4E-20 179.4 25.7 292 469-813 187-527 (875)
128 TIGR00348 hsdR type I site-spe 99.7 2.3E-15 5.1E-20 187.7 25.8 316 468-811 264-634 (667)
129 TIGR00631 uvrb excinuclease AB 99.7 5.9E-15 1.3E-19 181.5 27.8 120 672-829 430-556 (655)
130 COG0556 UvrB Helicase subunit 99.7 6.5E-15 1.4E-19 165.0 24.7 117 672-826 434-557 (663)
131 COG5407 SEC63 Preprotein trans 99.7 9.8E-16 2.1E-20 166.4 17.1 282 935-1249 224-548 (610)
132 KOG0948 Nuclear exosomal RNA h 99.7 3.6E-17 7.8E-22 188.0 6.4 130 1-137 456-587 (1041)
133 PRK07246 bifunctional ATP-depe 99.7 1E-14 2.2E-19 184.9 28.0 185 612-840 574-798 (820)
134 PLN03142 Probable chromatin-re 99.7 1.1E-14 2.5E-19 183.9 25.9 85 743-827 511-600 (1033)
135 COG1202 Superfamily II helicas 99.6 2.2E-15 4.9E-20 169.0 12.8 157 1-192 474-642 (830)
136 COG1110 Reverse gyrase [DNA re 99.6 3.9E-14 8.5E-19 169.9 23.3 278 441-786 71-404 (1187)
137 KOG0953 Mitochondrial RNA heli 99.6 3.8E-14 8.2E-19 159.2 20.8 280 468-836 192-486 (700)
138 PRK08074 bifunctional ATP-depe 99.6 3.3E-13 7.2E-18 174.5 30.6 124 683-840 751-908 (928)
139 PRK05298 excinuclease ABC subu 99.6 1.5E-13 3.2E-18 170.9 26.0 118 672-827 434-558 (652)
140 PRK12326 preprotein translocas 99.5 2.9E-12 6.2E-17 152.9 28.4 132 448-587 74-211 (764)
141 KOG1123 RNA polymerase II tran 99.5 1.4E-14 3.1E-19 159.8 8.1 322 420-831 301-658 (776)
142 PRK14873 primosome assembly pr 99.5 3.1E-13 6.6E-18 165.9 20.3 314 474-825 167-538 (665)
143 smart00487 DEXDc DEAD-like hel 99.5 2E-13 4.3E-18 146.0 16.4 145 468-624 25-173 (201)
144 PRK12900 secA preprotein trans 99.5 1.4E-12 3E-17 159.8 23.6 107 682-827 596-712 (1025)
145 COG4581 Superfamily II RNA hel 99.5 5.3E-14 1.1E-18 174.1 9.3 131 1-137 454-587 (1041)
146 KOG0949 Predicted helicase, DE 99.4 7.5E-14 1.6E-18 165.3 6.6 76 1-85 972-1047(1330)
147 PRK11747 dinG ATP-dependent DN 99.4 1.6E-11 3.4E-16 154.1 27.2 70 445-518 17-96 (697)
148 TIGR03117 cas_csf4 CRISPR-asso 99.4 4.7E-11 1E-15 144.6 29.7 61 460-523 9-69 (636)
149 PF04851 ResIII: Type III rest 99.4 1.1E-12 2.4E-17 138.6 13.4 151 451-622 2-183 (184)
150 KOG0921 Dosage compensation co 99.4 1E-12 2.2E-17 154.3 13.4 414 458-948 384-864 (1282)
151 PRK13103 secA preprotein trans 99.4 1.2E-11 2.7E-16 151.2 23.0 121 461-587 89-215 (913)
152 PRK13767 ATP-dependent helicas 99.4 1.8E-12 3.8E-17 166.9 15.7 144 1-177 324-475 (876)
153 TIGR02562 cas3_yersinia CRISPR 99.4 1.3E-11 2.8E-16 152.0 21.9 72 744-816 787-884 (1110)
154 cd00046 DEXDc DEAD-like helica 99.4 7.7E-12 1.7E-16 125.5 14.0 140 469-621 2-144 (144)
155 PF00271 Helicase_C: Helicase 99.3 2.7E-12 5.8E-17 114.4 8.2 73 740-812 4-78 (78)
156 cd00079 HELICc Helicase superf 99.3 4.8E-12 1E-16 125.5 10.9 112 674-822 18-131 (131)
157 PRK09751 putative ATP-dependen 99.3 7.8E-12 1.7E-16 163.1 15.3 130 1-142 311-448 (1490)
158 COG1199 DinG Rad3-related DNA 99.3 3.4E-11 7.5E-16 152.8 20.9 70 449-522 12-85 (654)
159 KOG0385 Chromatin remodeling c 99.3 1.6E-10 3.6E-15 134.8 23.0 323 420-827 166-600 (971)
160 KOG0390 DNA repair protein, SN 99.3 4.2E-10 9.2E-15 136.2 25.8 375 419-833 236-716 (776)
161 TIGR00604 rad3 DNA repair heli 99.3 8.8E-10 1.9E-14 139.8 27.8 73 448-522 5-82 (705)
162 COG4889 Predicted helicase [Ge 99.3 1E-11 2.2E-16 145.4 9.0 302 474-812 187-573 (1518)
163 CHL00122 secA preprotein trans 99.2 4.2E-09 9.2E-14 128.8 26.8 132 448-587 72-209 (870)
164 PRK12903 secA preprotein trans 99.2 2E-09 4.4E-14 130.6 22.9 132 448-587 74-211 (925)
165 PLN03137 ATP-dependent DNA hel 99.1 6.1E-11 1.3E-15 148.3 8.9 84 1-96 714-797 (1195)
166 TIGR00614 recQ_fam ATP-depende 99.1 1.1E-10 2.4E-15 141.4 9.1 85 1-97 260-344 (470)
167 PRK12902 secA preprotein trans 99.1 1.4E-08 3.1E-13 123.9 26.6 131 449-587 82-218 (939)
168 COG0514 RecQ Superfamily II DN 99.1 3.4E-10 7.4E-15 134.1 11.2 88 1-100 264-351 (590)
169 PRK11057 ATP-dependent DNA hel 99.1 3.9E-10 8.5E-15 140.3 12.2 86 1-98 270-355 (607)
170 PTZ00424 helicase 45; Provisio 99.1 9.5E-11 2.1E-15 140.2 6.3 82 1-94 301-382 (401)
171 PF02399 Herpes_ori_bp: Origin 99.1 1.3E-08 2.9E-13 122.9 24.0 299 467-826 49-388 (824)
172 TIGR03817 DECH_helic helicase/ 99.1 2.8E-10 6.1E-15 143.7 9.2 78 1-90 313-390 (742)
173 PLN00206 DEAD-box ATP-dependen 99.1 2.6E-10 5.6E-15 139.6 8.6 80 1-92 402-481 (518)
174 PF00271 Helicase_C: Helicase 99.1 2.3E-10 5.1E-15 101.9 6.1 62 1-72 17-78 (78)
175 KOG1000 Chromatin remodeling p 99.0 1.4E-08 3.1E-13 113.2 20.9 354 419-827 196-604 (689)
176 TIGR01389 recQ ATP-dependent D 99.0 3.7E-10 8E-15 141.1 8.7 88 1-100 258-345 (591)
177 smart00490 HELICc helicase sup 99.0 7E-10 1.5E-14 99.7 7.7 70 743-812 11-82 (82)
178 COG1201 Lhr Lhr-like helicases 99.0 2E-09 4.2E-14 132.5 13.3 147 1-181 288-445 (814)
179 PRK01297 ATP-dependent RNA hel 99.0 6.5E-10 1.4E-14 135.3 8.4 76 1-88 369-444 (475)
180 PF07652 Flavi_DEAD: Flaviviru 99.0 1E-08 2.3E-13 98.6 13.3 137 466-624 3-139 (148)
181 PRK10590 ATP-dependent RNA hel 98.9 1.2E-09 2.7E-14 132.0 8.2 77 1-89 279-355 (456)
182 KOG0387 Transcription-coupled 98.9 1.2E-07 2.5E-12 112.3 23.9 356 419-827 203-659 (923)
183 PRK04837 ATP-dependent RNA hel 98.9 1.2E-09 2.6E-14 131.2 5.9 79 1-91 289-367 (423)
184 PRK11776 ATP-dependent RNA hel 98.9 2.4E-09 5.1E-14 130.1 7.8 78 1-90 276-353 (460)
185 KOG0384 Chromodomain-helicase 98.9 4E-08 8.6E-13 121.0 18.0 85 743-827 723-812 (1373)
186 PRK11192 ATP-dependent RNA hel 98.9 2.5E-09 5.4E-14 129.1 7.8 79 1-91 279-357 (434)
187 PRK04537 ATP-dependent RNA hel 98.9 3.1E-09 6.6E-14 131.0 8.2 76 1-88 291-366 (572)
188 KOG0953 Mitochondrial RNA heli 98.8 6.6E-09 1.4E-13 117.7 7.8 95 1-98 391-488 (700)
189 PTZ00110 helicase; Provisional 98.8 8.4E-09 1.8E-13 126.7 8.8 78 1-90 411-488 (545)
190 smart00490 HELICc helicase sup 98.8 1.1E-08 2.5E-13 91.8 6.8 61 1-72 21-82 (82)
191 TIGR00643 recG ATP-dependent D 98.8 1.4E-08 3.1E-13 127.1 8.9 74 1-85 492-565 (630)
192 PRK11634 ATP-dependent RNA hel 98.8 1.4E-08 3.1E-13 125.8 8.7 77 1-89 279-355 (629)
193 smart00488 DEXDc2 DEAD-like he 98.8 4.7E-08 1E-12 109.9 12.1 76 448-523 4-84 (289)
194 smart00489 DEXDc3 DEAD-like he 98.8 4.7E-08 1E-12 109.9 12.1 76 448-523 4-84 (289)
195 PRK10917 ATP-dependent DNA hel 98.7 2.1E-08 4.6E-13 126.3 8.8 74 1-85 515-588 (681)
196 KOG0389 SNF2 family DNA-depend 98.7 9.7E-07 2.1E-11 104.5 20.8 352 474-845 425-908 (941)
197 PRK12901 secA preprotein trans 98.7 1.6E-06 3.4E-11 107.5 23.1 110 472-587 187-303 (1112)
198 KOG0392 SNF2 family DNA-depend 98.6 1.3E-06 2.8E-11 107.6 19.4 80 748-827 1372-1455(1549)
199 COG0610 Type I site-specific r 98.6 1.6E-06 3.4E-11 112.2 20.9 139 468-622 274-414 (962)
200 cd00079 HELICc Helicase superf 98.6 5.5E-08 1.2E-12 96.2 5.7 69 1-82 62-131 (131)
201 PF00176 SNF2_N: SNF2 family N 98.6 4.8E-07 1E-11 103.7 13.4 144 468-622 26-173 (299)
202 KOG0326 ATP-dependent RNA heli 98.6 1.1E-07 2.3E-12 100.8 6.8 94 1-106 356-453 (459)
203 KOG0328 Predicted ATP-dependen 98.5 1.8E-07 3.9E-12 97.5 8.2 81 1-93 300-380 (400)
204 KOG0352 ATP-dependent DNA heli 98.5 1.3E-07 2.8E-12 103.8 7.0 77 2-90 290-366 (641)
205 TIGR00580 mfd transcription-re 98.5 2.2E-07 4.7E-12 118.9 8.3 75 1-86 696-770 (926)
206 KOG0351 ATP-dependent DNA heli 98.4 4.6E-07 9.9E-12 114.4 8.0 86 1-98 519-604 (941)
207 PRK10689 transcription-repair 98.4 8.2E-07 1.8E-11 116.3 10.0 75 1-86 845-919 (1147)
208 KOG0332 ATP-dependent RNA heli 98.3 2.5E-06 5.4E-11 92.8 10.8 81 1-87 364-444 (477)
209 COG0513 SrmB Superfamily II DN 98.3 1.1E-06 2.4E-11 107.1 7.6 74 1-86 307-380 (513)
210 TIGR01587 cas3_core CRISPR-ass 98.3 1.5E-06 3.2E-11 102.4 8.3 74 1-87 258-337 (358)
211 KOG0350 DEAD-box ATP-dependent 98.3 1.5E-06 3.1E-11 98.0 7.5 84 1-96 467-550 (620)
212 KOG4439 RNA polymerase II tran 98.3 9E-05 1.9E-09 87.2 21.9 153 471-635 349-520 (901)
213 KOG0333 U5 snRNP-like RNA heli 98.2 1.8E-06 4E-11 97.7 7.5 80 2-93 552-631 (673)
214 TIGR01970 DEAH_box_HrpB ATP-de 98.2 9.4E-06 2E-10 103.1 12.2 146 1-183 246-399 (819)
215 KOG0331 ATP-dependent RNA heli 98.1 4.6E-06 1E-10 97.6 8.2 77 1-89 375-451 (519)
216 KOG0330 ATP-dependent RNA heli 98.1 6.1E-06 1.3E-10 90.5 7.7 82 1-94 334-415 (476)
217 COG1111 MPH1 ERCC4-like helica 98.1 6.9E-06 1.5E-10 93.7 8.1 79 1-92 409-489 (542)
218 PF02562 PhoH: PhoH-like prote 98.1 1.6E-05 3.4E-10 83.4 10.0 129 453-619 5-154 (205)
219 COG1200 RecG RecG-like helicas 98.1 5.7E-06 1.2E-10 98.5 7.4 76 1-87 517-592 (677)
220 TIGR00631 uvrb excinuclease AB 98.1 9.1E-06 2E-10 101.0 9.3 79 1-87 476-554 (655)
221 KOG0344 ATP-dependent RNA heli 98.0 8.4E-06 1.8E-10 94.5 7.7 79 2-92 423-501 (593)
222 PRK05298 excinuclease ABC subu 98.0 1.1E-05 2.4E-10 101.0 8.3 77 1-85 480-556 (652)
223 KOG0353 ATP-dependent DNA heli 98.0 4.9E-06 1.1E-10 89.9 4.2 75 1-87 351-468 (695)
224 COG4098 comFA Superfamily II D 98.0 1.3E-05 2.7E-10 86.7 7.0 75 3-85 341-415 (441)
225 PHA02653 RNA helicase NPH-II; 98.0 3.7E-05 8E-10 95.4 12.1 77 8-87 437-515 (675)
226 PRK11664 ATP-dependent RNA hel 98.0 2.6E-05 5.6E-10 99.4 10.8 144 1-183 249-402 (812)
227 KOG0348 ATP-dependent RNA heli 97.9 1.7E-05 3.6E-10 90.3 7.5 85 1-98 481-565 (708)
228 PF07517 SecA_DEAD: SecA DEAD- 97.9 4.6E-05 1E-09 83.4 10.3 133 447-587 72-210 (266)
229 PF06862 DUF1253: Protein of u 97.9 0.0041 8.9E-08 72.7 26.6 295 500-834 37-423 (442)
230 KOG0335 ATP-dependent RNA heli 97.9 2.5E-05 5.4E-10 90.1 7.6 73 2-86 372-444 (482)
231 PRK04914 ATP-dependent helicas 97.9 6.4E-05 1.4E-09 96.3 12.0 108 1-120 528-647 (956)
232 PRK11131 ATP-dependent RNA hel 97.9 4.3E-05 9.4E-10 99.4 10.4 142 1-183 323-474 (1294)
233 KOG4434 Molecular chaperone SE 97.8 2.4E-05 5.1E-10 84.3 6.3 89 215-303 66-171 (520)
234 COG0653 SecA Preprotein transl 97.8 0.0005 1.1E-08 84.9 18.5 124 458-587 84-213 (822)
235 PRK15483 type III restriction- 97.8 8.4E-05 1.8E-09 93.5 12.1 146 465-623 57-240 (986)
236 TIGR01967 DEAH_box_HrpA ATP-de 97.8 0.00015 3.2E-09 95.0 13.4 143 1-183 316-467 (1283)
237 KOG0345 ATP-dependent RNA heli 97.8 4.9E-05 1.1E-09 85.6 7.5 82 1-95 291-372 (567)
238 COG1205 Distinct helicase fami 97.8 2.4E-05 5.1E-10 99.9 5.8 80 1-92 348-428 (851)
239 KOG0386 Chromatin remodeling c 97.8 0.00034 7.3E-09 85.8 15.0 84 743-826 750-838 (1157)
240 KOG0336 ATP-dependent RNA heli 97.8 5.1E-05 1.1E-09 83.5 7.3 78 3-92 501-578 (629)
241 KOG0338 ATP-dependent RNA heli 97.8 6.5E-05 1.4E-09 85.1 8.1 85 1-97 460-544 (691)
242 KOG0343 RNA Helicase [RNA proc 97.7 5.7E-05 1.2E-09 86.4 7.4 86 1-98 349-434 (758)
243 PF13086 AAA_11: AAA domain; P 97.7 0.00013 2.8E-09 80.2 10.1 66 455-522 4-75 (236)
244 KOG1002 Nucleotide excision re 97.7 0.00019 4.1E-09 80.9 10.5 195 410-635 155-373 (791)
245 PRK13766 Hef nuclease; Provisi 97.7 6.5E-05 1.4E-09 97.7 8.2 73 1-86 407-479 (773)
246 PRK09200 preprotein translocas 97.6 0.00017 3.6E-09 90.3 10.4 256 2-289 463-750 (790)
247 KOG0354 DEAD-box like helicase 97.6 0.00012 2.5E-09 88.9 8.3 73 1-87 458-530 (746)
248 PHA02558 uvsW UvsW helicase; P 97.6 7.6E-05 1.7E-09 91.3 6.7 71 1-82 378-449 (501)
249 PRK10536 hypothetical protein; 97.6 0.00011 2.3E-09 79.2 6.9 56 453-511 60-115 (262)
250 KOG1802 RNA helicase nonsense 97.6 0.00016 3.5E-09 84.5 8.6 72 456-536 414-485 (935)
251 KOG0342 ATP-dependent RNA heli 97.6 0.00027 5.8E-09 80.4 10.1 79 2-92 365-443 (543)
252 TIGR02621 cas3_GSU0051 CRISPR- 97.6 0.00011 2.5E-09 91.8 7.9 71 1-84 304-390 (844)
253 KOG0340 ATP-dependent RNA heli 97.6 0.00021 4.6E-09 77.8 8.3 80 1-92 288-367 (442)
254 KOG4150 Predicted ATP-dependen 97.5 0.00015 3.2E-09 82.8 7.1 79 2-92 568-647 (1034)
255 TIGR00603 rad25 DNA repair hel 97.5 0.00019 4.2E-09 88.8 8.7 67 1-76 525-592 (732)
256 PF13604 AAA_30: AAA domain; P 97.5 0.00059 1.3E-08 72.4 11.2 62 453-519 2-65 (196)
257 KOG4284 DEAD box protein [Tran 97.5 0.00018 3.8E-09 83.8 7.1 74 1-86 306-379 (980)
258 PF13245 AAA_19: Part of AAA d 97.5 0.00029 6.3E-09 61.6 6.8 56 463-520 6-62 (76)
259 KOG0391 SNF2 family DNA-depend 97.5 0.00058 1.3E-08 84.2 10.9 137 421-598 615-761 (1958)
260 PRK05580 primosome assembly pr 97.4 0.00029 6.2E-09 89.0 8.4 81 4-87 467-550 (679)
261 TIGR00595 priA primosomal prot 97.4 0.00027 5.8E-09 85.9 7.3 78 7-87 302-382 (505)
262 KOG2340 Uncharacterized conser 97.4 0.0037 8E-08 71.8 15.5 78 750-827 583-669 (698)
263 TIGR03714 secA2 accessory Sec 97.4 0.00071 1.5E-08 84.0 10.9 98 2-114 459-581 (762)
264 PRK12898 secA preprotein trans 97.3 0.00068 1.5E-08 83.1 10.0 70 4-87 510-587 (656)
265 COG0553 HepA Superfamily II DN 97.3 0.0089 1.9E-07 79.5 21.0 84 744-827 736-823 (866)
266 COG3421 Uncharacterized protei 97.2 0.0056 1.2E-07 71.4 14.5 148 474-629 4-173 (812)
267 KOG0327 Translation initiation 97.2 0.00063 1.4E-08 75.5 6.2 80 1-92 297-376 (397)
268 PF12340 DUF3638: Protein of u 97.1 0.0027 5.8E-08 67.3 10.3 114 469-587 43-185 (229)
269 KOG0341 DEAD-box protein abstr 97.1 0.00062 1.4E-08 74.6 5.7 72 2-85 456-527 (610)
270 TIGR01447 recD exodeoxyribonuc 97.1 0.003 6.5E-08 77.9 12.4 141 455-618 148-293 (586)
271 PRK12906 secA preprotein trans 97.1 0.0014 3E-08 81.7 9.1 255 3-289 476-765 (796)
272 COG1197 Mfd Transcription-repa 97.1 0.00083 1.8E-08 85.2 7.2 75 1-86 839-913 (1139)
273 PRK10875 recD exonuclease V su 97.1 0.003 6.6E-08 78.0 11.9 141 455-618 155-299 (615)
274 PF13401 AAA_22: AAA domain; P 97.1 0.0033 7.2E-08 61.9 10.1 121 466-620 3-125 (131)
275 PF13307 Helicase_C_2: Helicas 97.1 0.00078 1.7E-08 69.5 5.5 117 683-835 8-160 (167)
276 TIGR01448 recD_rel helicase, p 97.0 0.0035 7.5E-08 79.7 12.4 64 449-515 320-383 (720)
277 PF13872 AAA_34: P-loop contai 97.0 0.0047 1E-07 67.9 11.4 138 474-622 69-221 (303)
278 PF09848 DUF2075: Uncharacteri 97.0 0.0012 2.6E-08 77.2 7.0 96 468-588 2-97 (352)
279 KOG0347 RNA helicase [RNA proc 97.0 0.0013 2.8E-08 75.7 6.5 97 3-111 499-603 (731)
280 TIGR00963 secA preprotein tran 96.9 0.0032 6.9E-08 77.8 10.2 99 4-114 440-557 (745)
281 KOG1132 Helicase of the DEAD s 96.9 0.004 8.6E-08 76.1 10.0 75 448-522 17-132 (945)
282 PRK12723 flagellar biosynthesi 96.8 0.016 3.5E-07 67.5 14.5 132 466-631 173-306 (388)
283 PF00448 SRP54: SRP54-type pro 96.8 0.012 2.6E-07 62.2 12.2 126 467-623 1-127 (196)
284 KOG0334 RNA helicase [RNA proc 96.7 0.0061 1.3E-07 76.2 10.2 106 2-120 648-757 (997)
285 PF00580 UvrD-helicase: UvrD/R 96.7 0.0035 7.6E-08 72.2 8.0 106 453-565 1-107 (315)
286 PRK09694 helicase Cas3; Provis 96.7 0.0083 1.8E-07 76.9 11.3 60 1-73 597-664 (878)
287 KOG0339 ATP-dependent RNA heli 96.6 0.004 8.7E-08 71.0 6.7 77 2-90 503-579 (731)
288 PHA02533 17 large terminase pr 96.5 0.024 5.2E-07 69.2 13.3 74 449-525 56-129 (534)
289 PF14520 HHH_5: Helix-hairpin- 96.4 0.0034 7.3E-08 52.3 3.8 54 1073-1129 6-59 (60)
290 COG1875 NYN ribonuclease and A 96.3 0.014 3.1E-07 64.7 9.0 143 419-618 226-385 (436)
291 PF05876 Terminase_GpA: Phage 96.3 0.0087 1.9E-07 73.7 8.1 165 452-632 16-192 (557)
292 PRK14722 flhF flagellar biosyn 96.3 0.05 1.1E-06 63.0 13.4 122 465-622 135-258 (374)
293 PRK12900 secA preprotein trans 96.2 0.02 4.3E-07 72.3 10.7 106 3-114 632-751 (1025)
294 COG3587 Restriction endonuclea 96.2 0.021 4.6E-07 69.7 10.2 68 768-835 482-562 (985)
295 KOG1803 DNA helicase [Replicat 96.1 0.0091 2E-07 70.4 6.5 69 448-521 181-250 (649)
296 cd00009 AAA The AAA+ (ATPases 95.9 0.029 6.4E-07 55.9 8.5 38 467-509 19-56 (151)
297 COG1419 FlhF Flagellar GTP-bin 95.9 0.15 3.3E-06 58.5 14.7 130 466-631 202-332 (407)
298 PRK11889 flhF flagellar biosyn 95.9 0.13 2.9E-06 59.1 14.1 122 466-622 240-363 (436)
299 KOG1805 DNA replication helica 95.8 0.034 7.5E-07 68.9 9.7 122 419-587 667-809 (1100)
300 TIGR02768 TraA_Ti Ti-type conj 95.7 0.066 1.4E-06 68.6 12.3 60 451-515 351-411 (744)
301 PF05127 Helicase_RecD: Helica 95.7 0.0046 9.9E-08 63.4 1.5 126 471-624 1-126 (177)
302 PRK14974 cell division protein 95.7 0.077 1.7E-06 60.8 11.5 125 466-623 139-266 (336)
303 TIGR00376 DNA helicase, putati 95.6 0.02 4.4E-07 71.7 7.1 65 453-522 158-223 (637)
304 PRK06526 transposase; Provisio 95.5 0.05 1.1E-06 60.0 9.0 45 465-515 96-140 (254)
305 PF05970 PIF1: PIF1-like helic 95.5 0.052 1.1E-06 63.6 9.6 109 465-605 20-130 (364)
306 PRK04296 thymidine kinase; Pro 95.5 0.037 7.9E-07 58.5 7.5 36 468-508 3-38 (190)
307 PRK13889 conjugal transfer rel 95.4 0.084 1.8E-06 68.6 11.9 42 469-515 364-405 (988)
308 PF05621 TniB: Bacterial TniB 95.3 0.074 1.6E-06 58.9 9.4 120 467-617 61-186 (302)
309 KOG0923 mRNA splicing factor A 95.3 0.064 1.4E-06 63.7 9.3 113 2-121 517-637 (902)
310 TIGR01075 uvrD DNA helicase II 95.3 0.057 1.2E-06 69.5 9.9 107 453-584 5-113 (715)
311 PRK11054 helD DNA helicase IV; 95.3 0.048 1.1E-06 68.7 8.9 96 445-565 188-285 (684)
312 PRK05703 flhF flagellar biosyn 95.3 0.26 5.6E-06 58.8 14.4 125 467-628 221-348 (424)
313 PRK10919 ATP-dependent DNA hel 95.1 0.044 9.4E-07 69.6 7.9 90 453-565 3-94 (672)
314 PF00308 Bac_DnaA: Bacterial d 95.1 0.16 3.4E-06 55.0 11.1 107 469-623 36-142 (219)
315 PRK13826 Dtr system oriT relax 95.1 0.14 3.1E-06 66.9 12.5 61 450-515 379-440 (1102)
316 COG1061 SSL2 DNA or RNA helica 95.1 0.042 9.2E-07 66.1 7.4 60 2-71 317-376 (442)
317 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.17 3.8E-06 55.5 11.4 52 464-521 18-69 (237)
318 PRK11773 uvrD DNA-dependent he 95.0 0.074 1.6E-06 68.4 9.6 107 453-584 10-118 (721)
319 TIGR01547 phage_term_2 phage t 95.0 0.12 2.5E-06 61.8 10.7 137 469-623 3-142 (396)
320 PRK14087 dnaA chromosomal repl 95.0 0.19 4.1E-06 60.5 12.3 106 470-621 144-249 (450)
321 KOG0922 DEAH-box RNA helicase 94.9 0.085 1.8E-06 63.3 8.9 133 13-182 312-452 (674)
322 smart00382 AAA ATPases associa 94.9 0.065 1.4E-06 52.9 7.0 43 467-514 2-44 (148)
323 PRK12727 flagellar biosynthesi 94.9 1.1 2.4E-05 53.8 17.9 170 421-628 289-475 (559)
324 KOG0329 ATP-dependent RNA heli 94.8 0.017 3.6E-07 60.4 2.4 57 21-89 302-358 (387)
325 PRK05973 replicative DNA helic 94.8 0.21 4.6E-06 54.2 11.0 137 457-620 54-192 (237)
326 PRK08181 transposase; Validate 94.8 0.3 6.6E-06 54.2 12.5 46 465-516 104-149 (269)
327 PRK08727 hypothetical protein; 94.8 0.19 4E-06 55.0 10.8 34 469-507 43-76 (233)
328 COG1198 PriA Primosomal protei 94.8 0.049 1.1E-06 67.9 6.8 81 9-92 526-609 (730)
329 PRK12726 flagellar biosynthesi 94.8 0.33 7.2E-06 55.8 12.8 131 465-631 204-336 (407)
330 cd01120 RecA-like_NTPases RecA 94.7 0.18 3.8E-06 51.5 10.0 38 470-512 2-39 (165)
331 KOG1015 Transcription regulato 94.7 0.61 1.3E-05 57.8 15.2 115 474-590 703-837 (1567)
332 TIGR02881 spore_V_K stage V sp 94.7 0.15 3.3E-06 56.9 10.0 22 466-487 41-62 (261)
333 PRK12377 putative replication 94.7 0.3 6.4E-06 53.6 11.8 44 468-517 102-145 (248)
334 PRK14721 flhF flagellar biosyn 94.7 0.49 1.1E-05 55.8 14.3 128 466-629 190-318 (420)
335 PRK14701 reverse gyrase; Provi 94.6 0.013 2.7E-07 80.0 1.2 70 5-74 366-446 (1638)
336 cd01124 KaiC KaiC is a circadi 94.6 0.091 2E-06 55.3 7.5 47 470-522 2-48 (187)
337 PRK07952 DNA replication prote 94.5 0.35 7.5E-06 52.9 11.9 40 468-513 100-139 (244)
338 PRK11448 hsdR type I restricti 94.5 0.1 2.2E-06 69.3 9.1 59 5-73 743-802 (1123)
339 KOG0388 SNF2 family DNA-depend 94.5 0.12 2.6E-06 61.6 8.5 103 474-590 593-711 (1185)
340 COG1444 Predicted P-loop ATPas 94.5 0.21 4.5E-06 62.1 11.1 124 469-624 233-359 (758)
341 PLN03142 Probable chromatin-re 94.5 0.069 1.5E-06 69.5 7.3 75 1-85 521-598 (1033)
342 smart00492 HELICc3 helicase su 94.4 0.076 1.7E-06 52.8 6.0 76 746-822 24-135 (141)
343 PHA03333 putative ATPase subun 94.4 0.6 1.3E-05 57.2 14.4 140 470-633 190-343 (752)
344 PF04408 HA2: Helicase associa 94.4 0.043 9.4E-07 51.3 4.0 65 905-975 1-65 (102)
345 PHA03368 DNA packaging termina 94.4 0.38 8.2E-06 58.6 12.5 130 471-621 258-390 (738)
346 PRK08903 DnaA regulatory inact 94.3 0.27 5.8E-06 53.6 10.7 21 466-486 41-61 (227)
347 COG1203 CRISPR-associated heli 94.3 0.055 1.2E-06 69.3 6.0 72 1-85 474-549 (733)
348 PRK14723 flhF flagellar biosyn 94.2 0.45 9.9E-06 59.8 13.4 120 467-622 185-306 (767)
349 PRK14956 DNA polymerase III su 93.9 0.2 4.4E-06 59.6 9.1 20 468-487 41-60 (484)
350 PRK11823 DNA repair protein Ra 93.9 0.44 9.6E-06 57.3 12.2 120 466-618 79-205 (446)
351 PRK08084 DNA replication initi 93.9 0.54 1.2E-05 51.5 11.9 35 469-508 47-81 (235)
352 PRK08116 hypothetical protein; 93.9 0.68 1.5E-05 51.7 12.8 44 467-516 114-157 (268)
353 TIGR01074 rep ATP-dependent DN 93.9 0.15 3.2E-06 65.4 8.6 90 453-565 2-93 (664)
354 KOG0920 ATP-dependent RNA heli 93.9 0.19 4.2E-06 63.7 9.2 163 1-207 454-625 (924)
355 TIGR02760 TraI_TIGR conjugativ 93.7 1.8 4E-05 61.3 19.2 220 450-711 427-653 (1960)
356 PRK00149 dnaA chromosomal repl 93.7 0.26 5.6E-06 59.8 9.8 43 469-515 150-192 (450)
357 PTZ00112 origin recognition co 93.6 0.65 1.4E-05 58.3 12.8 38 468-506 782-822 (1164)
358 PRK14964 DNA polymerase III su 93.6 0.23 4.9E-06 59.8 8.9 21 467-487 35-55 (491)
359 PRK06893 DNA replication initi 93.6 0.41 8.8E-06 52.2 10.3 46 573-622 90-135 (229)
360 KOG0924 mRNA splicing factor A 93.6 0.25 5.5E-06 58.9 8.9 140 14-192 620-767 (1042)
361 cd01121 Sms Sms (bacterial rad 93.5 0.62 1.3E-05 54.4 12.1 120 466-618 81-207 (372)
362 KOG1001 Helicase-like transcri 93.5 0.38 8.3E-06 60.0 10.9 108 470-588 155-268 (674)
363 PRK14960 DNA polymerase III su 93.5 0.3 6.5E-06 60.0 9.6 21 467-487 37-57 (702)
364 PF03796 DnaB_C: DnaB-like hel 93.5 0.35 7.6E-06 53.9 9.7 148 461-620 13-179 (259)
365 TIGR00064 ftsY signal recognit 93.4 0.8 1.7E-05 51.2 12.4 54 466-524 71-126 (272)
366 TIGR03499 FlhF flagellar biosy 93.4 0.35 7.6E-06 54.5 9.6 55 466-523 193-249 (282)
367 TIGR03015 pepcterm_ATPase puta 93.4 0.19 4.1E-06 56.4 7.6 19 468-486 44-62 (269)
368 PRK04328 hypothetical protein; 93.4 0.66 1.4E-05 51.3 11.6 52 464-521 20-71 (249)
369 PRK07003 DNA polymerase III su 93.4 0.29 6.3E-06 60.8 9.4 21 467-487 38-58 (830)
370 PRK14952 DNA polymerase III su 93.4 0.25 5.4E-06 60.9 8.9 41 571-618 115-155 (584)
371 CHL00181 cbbX CbbX; Provisiona 93.4 0.5 1.1E-05 53.3 10.7 22 466-487 58-79 (287)
372 TIGR00362 DnaA chromosomal rep 93.3 0.48 1E-05 56.7 11.1 37 469-508 138-174 (405)
373 PF00004 AAA: ATPase family as 93.3 0.22 4.9E-06 48.7 7.0 47 575-621 59-112 (132)
374 PRK07764 DNA polymerase III su 93.3 0.28 6E-06 63.1 9.5 41 571-618 117-157 (824)
375 PRK00771 signal recognition pa 93.3 0.67 1.5E-05 55.2 12.1 122 466-622 94-218 (437)
376 PRK14949 DNA polymerase III su 93.3 0.52 1.1E-05 59.8 11.5 39 572-617 117-155 (944)
377 PF13177 DNA_pol3_delta2: DNA 93.2 0.47 1E-05 48.6 9.4 46 569-621 97-142 (162)
378 PRK14961 DNA polymerase III su 93.2 0.19 4.2E-06 58.9 7.4 21 467-487 38-58 (363)
379 cd01122 GP4d_helicase GP4d_hel 93.2 0.95 2.1E-05 50.8 12.8 144 464-620 27-190 (271)
380 smart00492 HELICc3 helicase su 93.1 0.22 4.7E-06 49.6 6.6 75 7-82 37-135 (141)
381 TIGR01407 dinG_rel DnaQ family 93.0 0.15 3.3E-06 66.8 6.9 95 5-100 713-829 (850)
382 PRK08691 DNA polymerase III su 93.0 0.33 7.2E-06 60.2 9.1 21 467-487 38-58 (709)
383 PRK12724 flagellar biosynthesi 92.9 1.5 3.3E-05 51.3 13.9 53 466-522 222-276 (432)
384 cd00984 DnaB_C DnaB helicase C 92.9 0.67 1.5E-05 51.0 10.9 143 462-620 8-172 (242)
385 COG1643 HrpA HrpA-like helicas 92.9 0.21 4.6E-06 63.4 7.5 134 14-183 310-451 (845)
386 TIGR01073 pcrA ATP-dependent D 92.9 0.37 8E-06 62.3 10.0 89 453-565 5-95 (726)
387 TIGR03420 DnaA_homol_Hda DnaA 92.8 0.56 1.2E-05 51.0 10.0 21 467-487 38-58 (226)
388 KOG0349 Putative DEAD-box RNA 92.8 0.12 2.6E-06 58.0 4.6 76 2-89 543-619 (725)
389 KOG2373 Predicted mitochondria 92.8 0.14 3E-06 56.4 4.9 146 453-607 259-413 (514)
390 KOG0989 Replication factor C, 92.8 0.14 3.1E-06 55.9 5.0 44 571-621 126-169 (346)
391 COG4626 Phage terminase-like p 92.8 0.49 1.1E-05 56.4 9.7 77 447-525 56-143 (546)
392 PRK13104 secA preprotein trans 92.8 0.35 7.6E-06 61.4 9.0 100 2-115 479-628 (896)
393 TIGR02880 cbbX_cfxQ probable R 92.6 0.66 1.4E-05 52.4 10.2 20 467-486 58-77 (284)
394 TIGR03881 KaiC_arch_4 KaiC dom 92.5 1.6 3.4E-05 47.7 13.0 40 464-508 17-56 (229)
395 PRK12766 50S ribosomal protein 92.5 0.28 6.1E-06 51.7 6.5 55 1072-1129 3-57 (232)
396 PRK06067 flagellar accessory p 92.5 0.87 1.9E-05 49.9 10.9 53 464-522 22-74 (234)
397 TIGR02237 recomb_radB DNA repa 92.4 0.96 2.1E-05 48.5 11.0 41 464-509 9-49 (209)
398 PRK14958 DNA polymerase III su 92.3 0.4 8.7E-06 58.5 8.7 40 572-618 117-156 (509)
399 PRK14088 dnaA chromosomal repl 92.3 1.3 2.8E-05 53.3 12.9 36 470-508 133-168 (440)
400 PF05496 RuvB_N: Holliday junc 92.3 0.19 4.2E-06 53.2 5.1 19 468-486 51-69 (233)
401 PRK06995 flhF flagellar biosyn 92.3 0.37 8.1E-06 57.7 8.1 56 466-524 255-312 (484)
402 PRK12323 DNA polymerase III su 92.3 0.47 1E-05 58.3 8.9 43 571-620 121-163 (700)
403 PLN03025 replication factor C 92.2 0.51 1.1E-05 54.4 9.1 19 468-486 35-53 (319)
404 PF13307 Helicase_C_2: Helicas 92.2 0.17 3.8E-06 52.1 4.6 90 5-95 47-160 (167)
405 cd01393 recA_like RecA is a b 92.2 1.1 2.3E-05 48.8 11.1 137 464-620 16-168 (226)
406 COG1484 DnaC DNA replication p 92.1 0.5 1.1E-05 52.2 8.4 52 464-521 102-153 (254)
407 COG1702 PhoH Phosphate starvat 92.0 0.35 7.7E-06 54.1 6.9 53 453-508 129-181 (348)
408 PRK07994 DNA polymerase III su 92.0 1.1 2.5E-05 55.7 12.1 22 467-488 38-59 (647)
409 PRK06904 replicative DNA helic 92.0 1 2.2E-05 54.6 11.5 143 465-619 219-382 (472)
410 TIGR00678 holB DNA polymerase 92.0 0.87 1.9E-05 47.9 9.8 55 557-618 79-133 (188)
411 PRK14086 dnaA chromosomal repl 91.9 1.9 4E-05 53.2 13.6 103 470-620 317-419 (617)
412 PRK06645 DNA polymerase III su 91.9 0.84 1.8E-05 55.4 10.7 22 467-488 43-64 (507)
413 smart00847 HA2 Helicase associ 91.9 0.21 4.6E-06 45.6 4.4 58 906-967 2-59 (92)
414 PRK12904 preprotein translocas 91.9 0.61 1.3E-05 59.1 9.7 100 4-115 465-614 (830)
415 PRK05748 replicative DNA helic 91.9 0.85 1.8E-05 55.3 10.9 144 465-620 201-364 (448)
416 PRK12422 chromosomal replicati 91.9 0.64 1.4E-05 55.8 9.6 34 470-508 144-177 (445)
417 PRK13107 preprotein translocas 91.9 0.51 1.1E-05 59.9 8.8 259 2-290 484-805 (908)
418 PRK06835 DNA replication prote 91.8 1.2 2.6E-05 51.1 11.3 43 468-516 184-226 (329)
419 PRK05642 DNA replication initi 91.8 0.89 1.9E-05 49.7 9.9 34 470-508 48-81 (234)
420 COG0556 UvrB Helicase subunit 91.8 0.32 6.9E-06 56.9 6.4 74 4-85 483-556 (663)
421 PF03354 Terminase_1: Phage Te 91.8 1.4 3.1E-05 53.7 12.7 60 466-526 21-80 (477)
422 TIGR02012 tigrfam_recA protein 91.8 0.4 8.7E-06 54.4 7.2 48 463-515 51-98 (321)
423 COG2256 MGS1 ATPase related to 91.8 0.7 1.5E-05 52.7 8.9 39 575-624 105-143 (436)
424 PRK00411 cdc6 cell division co 91.6 1.1 2.5E-05 53.3 11.5 36 469-507 57-92 (394)
425 PRK14962 DNA polymerase III su 91.6 0.89 1.9E-05 55.0 10.4 20 468-487 37-56 (472)
426 TIGR01425 SRP54_euk signal rec 91.6 2.3 4.9E-05 50.4 13.4 133 466-631 99-235 (429)
427 PRK10416 signal recognition pa 91.6 2.3 5E-05 48.7 13.2 54 466-524 113-168 (318)
428 PRK13833 conjugal transfer pro 91.5 0.21 4.5E-06 56.9 4.6 61 419-512 126-186 (323)
429 cd00983 recA RecA is a bacter 91.4 0.36 7.7E-06 54.9 6.4 47 464-515 52-98 (325)
430 PRK06731 flhF flagellar biosyn 91.4 2.9 6.2E-05 46.5 13.3 127 467-630 75-204 (270)
431 TIGR03878 thermo_KaiC_2 KaiC d 91.4 1.3 2.8E-05 49.3 10.7 39 465-508 34-72 (259)
432 PRK09354 recA recombinase A; P 91.3 0.47 1E-05 54.4 7.1 46 464-514 57-102 (349)
433 TIGR03600 phage_DnaB phage rep 91.2 1.1 2.4E-05 53.9 10.7 145 464-620 191-353 (421)
434 PRK08533 flagellar accessory p 91.2 0.43 9.3E-06 52.0 6.6 52 464-521 21-72 (230)
435 COG0593 DnaA ATPase involved i 91.2 2.6 5.5E-05 49.3 13.1 45 574-622 175-219 (408)
436 PRK08506 replicative DNA helic 91.2 0.98 2.1E-05 54.8 10.3 144 464-620 189-351 (472)
437 KOG0346 RNA helicase [RNA proc 91.1 0.51 1.1E-05 53.8 6.9 75 1-87 302-411 (569)
438 KOG1133 Helicase of the DEAD s 91.1 0.22 4.8E-06 59.8 4.3 47 448-494 11-61 (821)
439 PRK08451 DNA polymerase III su 91.0 0.9 1.9E-05 55.3 9.6 42 570-618 113-154 (535)
440 PRK09361 radB DNA repair and r 91.0 1.1 2.5E-05 48.6 9.7 41 464-509 20-60 (225)
441 PF05729 NACHT: NACHT domain 91.0 1.5 3.3E-05 44.6 10.2 45 469-514 2-47 (166)
442 PRK06921 hypothetical protein; 91.0 1 2.2E-05 50.2 9.4 44 467-515 117-160 (266)
443 TIGR02785 addA_Gpos recombinat 90.8 0.43 9.3E-06 65.0 7.4 124 453-585 2-126 (1232)
444 PRK14955 DNA polymerase III su 90.7 0.75 1.6E-05 54.7 8.6 21 467-487 38-58 (397)
445 PRK14712 conjugal transfer nic 90.7 0.95 2.1E-05 61.5 10.2 68 446-516 829-900 (1623)
446 TIGR00665 DnaB replicative DNA 90.6 1.6 3.4E-05 52.8 11.4 144 464-620 192-354 (434)
447 TIGR02782 TrbB_P P-type conjug 90.6 0.26 5.6E-06 55.9 4.3 60 420-512 115-174 (299)
448 PRK14951 DNA polymerase III su 90.6 0.91 2E-05 56.4 9.3 23 466-488 37-59 (618)
449 PRK09111 DNA polymerase III su 90.5 0.95 2.1E-05 56.3 9.4 43 569-618 127-169 (598)
450 PRK14954 DNA polymerase III su 90.5 0.82 1.8E-05 56.9 8.8 21 467-487 38-58 (620)
451 smart00491 HELICc2 helicase su 90.5 0.4 8.7E-06 47.8 5.0 74 749-823 24-137 (142)
452 TIGR02928 orc1/cdc6 family rep 90.5 1.3 2.9E-05 52.1 10.4 19 902-920 333-351 (365)
453 PRK12402 replication factor C 90.4 1.2 2.7E-05 51.7 10.1 19 469-487 38-56 (337)
454 PRK07004 replicative DNA helic 90.4 1.2 2.5E-05 54.0 9.8 144 465-620 211-373 (460)
455 PRK05707 DNA polymerase III su 90.3 0.83 1.8E-05 52.5 8.1 45 569-620 101-145 (328)
456 PRK08760 replicative DNA helic 90.2 1.2 2.6E-05 54.1 9.8 144 464-620 226-388 (476)
457 KOG0388 SNF2 family DNA-depend 90.2 0.98 2.1E-05 54.3 8.5 84 743-826 1068-1154(1185)
458 COG3973 Superfamily I DNA and 90.1 0.66 1.4E-05 55.3 7.0 66 453-521 213-281 (747)
459 PRK13709 conjugal transfer nic 90.0 1.6 3.4E-05 60.3 11.6 70 445-515 960-1031(1747)
460 PF06745 KaiC: KaiC; InterPro 90.0 1.9 4.2E-05 46.8 10.5 53 464-521 16-68 (226)
461 PRK14957 DNA polymerase III su 89.9 1.2 2.6E-05 54.6 9.4 41 571-618 116-156 (546)
462 PRK05563 DNA polymerase III su 89.9 1.6 3.5E-05 54.1 10.8 22 467-488 38-59 (559)
463 PRK14963 DNA polymerase III su 89.9 2.6 5.7E-05 51.4 12.3 25 468-493 37-61 (504)
464 COG0466 Lon ATP-dependent Lon 89.9 0.91 2E-05 55.5 8.1 110 451-601 326-445 (782)
465 PRK13894 conjugal transfer ATP 89.8 0.31 6.8E-06 55.6 4.1 60 420-512 131-190 (319)
466 TIGR02760 TraI_TIGR conjugativ 89.5 1.1 2.5E-05 63.3 10.0 64 449-516 1016-1084(1960)
467 cd01394 radB RadB. The archaea 89.5 2.3 5E-05 45.9 10.5 39 464-507 16-54 (218)
468 PRK08074 bifunctional ATP-depe 89.5 0.62 1.3E-05 61.6 7.1 96 4-100 791-908 (928)
469 PRK14969 DNA polymerase III su 89.5 1.8 3.9E-05 53.3 10.6 42 570-618 115-156 (527)
470 cd03115 SRP The signal recogni 89.4 3.3 7.1E-05 42.8 11.2 47 469-520 2-50 (173)
471 PRK05636 replicative DNA helic 89.4 1.7 3.7E-05 53.0 10.2 142 465-619 263-423 (505)
472 PRK07940 DNA polymerase III su 89.3 1.1 2.4E-05 52.7 8.4 21 467-487 36-56 (394)
473 PRK14959 DNA polymerase III su 89.3 1.5 3.2E-05 54.3 9.5 22 467-488 38-59 (624)
474 PRK14873 primosome assembly pr 89.3 1.2 2.6E-05 56.0 9.0 71 676-779 180-250 (665)
475 PF13871 Helicase_C_4: Helicas 89.2 0.73 1.6E-05 50.9 6.3 55 760-814 52-116 (278)
476 PRK04195 replication factor C 89.1 1.4 3E-05 54.0 9.3 19 467-485 39-57 (482)
477 COG0552 FtsY Signal recognitio 89.1 4 8.7E-05 45.9 11.8 129 466-623 138-271 (340)
478 PRK08006 replicative DNA helic 89.0 3.3 7.2E-05 50.1 12.3 145 464-620 221-385 (471)
479 PRK09112 DNA polymerase III su 89.0 3.2 6.9E-05 48.2 11.7 42 571-619 138-179 (351)
480 PRK14965 DNA polymerase III su 88.9 1.9 4.1E-05 53.8 10.4 21 467-487 38-58 (576)
481 PRK10867 signal recognition pa 88.9 4.1 8.8E-05 48.5 12.6 53 467-523 100-154 (433)
482 PHA03372 DNA packaging termina 88.9 3.1 6.7E-05 50.4 11.4 157 450-631 186-346 (668)
483 smart00491 HELICc2 helicase su 88.9 0.66 1.4E-05 46.2 5.2 74 8-82 35-136 (142)
484 COG1199 DinG Rad3-related DNA 88.8 0.67 1.5E-05 59.3 6.6 91 7-98 518-630 (654)
485 COG0470 HolB ATPase involved i 88.7 2 4.4E-05 49.5 10.1 42 571-619 106-147 (325)
486 PF01637 Arch_ATPase: Archaeal 88.6 0.31 6.7E-06 53.1 3.0 28 457-484 8-37 (234)
487 PRK04301 radA DNA repair and r 88.5 0.73 1.6E-05 53.0 6.0 57 1071-1130 5-61 (317)
488 PF05707 Zot: Zonular occluden 88.5 0.33 7.2E-06 51.4 3.0 26 468-493 1-27 (193)
489 PRK07246 bifunctional ATP-depe 88.5 1.1 2.5E-05 58.0 8.3 94 6-100 683-798 (820)
490 PRK08769 DNA polymerase III su 88.5 3.1 6.8E-05 47.5 10.9 45 569-620 108-152 (319)
491 TIGR02655 circ_KaiC circadian 88.4 3.1 6.8E-05 50.9 11.7 52 465-522 261-312 (484)
492 PRK05896 DNA polymerase III su 88.4 3.2 6.9E-05 51.2 11.4 22 467-488 38-59 (605)
493 PRK05595 replicative DNA helic 88.2 2.1 4.5E-05 51.8 9.9 144 464-620 198-360 (444)
494 PRK07133 DNA polymerase III su 88.2 2.3 5E-05 53.5 10.3 21 467-487 40-60 (725)
495 PHA02544 44 clamp loader, smal 88.2 2.1 4.6E-05 49.2 9.7 39 574-618 100-138 (316)
496 KOG0298 DEAD box-containing he 88.1 2.1 4.5E-05 55.5 9.8 156 466-635 373-568 (1394)
497 PHA00350 putative assembly pro 88.1 1.4 3.1E-05 51.3 8.0 27 468-494 2-29 (399)
498 PRK09165 replicative DNA helic 88.0 2.5 5.5E-05 51.6 10.4 145 465-620 215-392 (497)
499 KOG0926 DEAH-box RNA helicase 87.8 0.35 7.6E-06 58.9 2.8 82 1-85 614-703 (1172)
500 PRK06321 replicative DNA helic 87.8 3 6.4E-05 50.5 10.7 144 464-620 223-388 (472)
No 1
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.6e-152 Score=1339.00 Aligned_cols=879 Identities=71% Similarity=1.148 Sum_probs=826.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|.+.+|.++|++|++|+++|+|||+|||||||||||+||||||+.|||++|+|.++++.|++||.|||||||+|+.|+++
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcCchhHH
Q 000849 81 IITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLG 160 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~~~~~ 160 (1254)
|++.+++..+|.++++++.||||++...+.+.||+||+.| +.+.+++++|+.+||+|+||.+||..|++++...|..++
T Consensus 697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le 775 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLE 775 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999997799999
Q ss_pred HHHHHHHHHHHHHhhhcCcccccCccCceeec------------------------------------------------
Q 000849 161 ERITDLIHTAANVLDRNNLVKYGRKSGYFQSE------------------------------------------------ 192 (1254)
Q Consensus 161 ~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t------------------------------------------------ 192 (1254)
+.+.+++++|+..|+++|+|.||..+|.+.+|
T Consensus 776 ~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr 855 (1674)
T KOG0951|consen 776 QRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVR 855 (1674)
T ss_pred HHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCcc
Confidence 99999999999999999999999999998888
Q ss_pred -ccHHHHHHHhccCCccCCCCCCChhHHHHHHHHHHHccccccCccccccC-----cHHHHHHHHHHHHHhcCcHHHHHH
Q 000849 193 -KIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQLAEK 266 (1254)
Q Consensus 193 -~e~~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~is~~~~~~~~l~~D~-----~a~ri~~a~~ei~~~~~~~~~a~~ 266 (1254)
+|+.+|.++++++|||+++..+.|+.|+|+|||+|||++.+++|+|.+|| +|+|++||+|||+..+||+..+..
T Consensus 856 ~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~ 935 (1674)
T KOG0951|consen 856 EEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQM 935 (1674)
T ss_pred HHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHH
Confidence 56789999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccccCCCCHHHHHHHHhcCCC--------------------CCC------------------
Q 000849 267 ALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF--------------------LGK------------------ 308 (1254)
Q Consensus 267 ~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~--------------------~g~------------------ 308 (1254)
++++|||++.++|+..+||+||+|++.+++++|+.+.++ +|+
T Consensus 936 ~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~v 1015 (1674)
T KOG0951|consen 936 ALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHV 1015 (1674)
T ss_pred HHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeee
Confidence 999999999999999999999999999999999999877 333
Q ss_pred -CCccccceEEEEEeeeeeecccccCcceEEEEEEEeCCCCeEEEEEeeeeccccCCcceEEEEEeeCCCCCCCC-----
Q 000849 309 -PITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ----- 382 (1254)
Q Consensus 309 -pi~~~~~~~~~~~~~~~~w~~~~~g~~~~f~~~ved~~~~~il~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~----- 382 (1254)
|||++++++++.++|+|.||.++||..|+||++|||.||++|+|++.+.++++ +|.++|++|+++| ||+
T Consensus 1016 qpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi~l 1090 (1674)
T KOG0951|consen 1016 QPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFIRL 1090 (1674)
T ss_pred eeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEEEE
Confidence 99999999999999999999999999999999999999999999999999886 8999999999999 776
Q ss_pred -----------------cccCCCCCCCCCCCCCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHH
Q 000849 383 -----------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAAL 445 (1254)
Q Consensus 383 -----------------~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~ 445 (1254)
++++|.++|++|+++|+++.|++++.++.+..+|..| ||+|+|+|+.++++++|++|+
T Consensus 1091 vSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~---n~iqtqVf~~~y~~nd~v~vg-- 1165 (1674)
T KOG0951|consen 1091 VSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDF---NPIQTQVFTSLYNTNDNVLVG-- 1165 (1674)
T ss_pred eeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhcccc---CCceEEEEeeeecccceEEEe--
Confidence 8999999999999999999999999999999997643 999999999999999999999
Q ss_pred HhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhc
Q 000849 446 SRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFG 525 (1254)
Q Consensus 446 ~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~ 525 (1254)
||+|||||.|+.+++++ . ...+ +++|++|..+.+..++..|.++|+
T Consensus 1166 ----------------------------a~~gsgkt~~ae~a~l~---~-~~~~--~~vyi~p~~~i~~~~~~~w~~~f~ 1211 (1674)
T KOG0951|consen 1166 ----------------------------APNGSGKTACAELALLR---P-DTIG--RAVYIAPLEEIADEQYRDWEKKFS 1211 (1674)
T ss_pred ----------------------------cCCCCchhHHHHHHhcC---C-ccce--EEEEecchHHHHHHHHHHHHHhhc
Confidence 99999999999999986 1 2344 999999999999999999999999
Q ss_pred cccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHH
Q 000849 526 KELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIA 605 (1254)
Q Consensus 526 ~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~ 605 (1254)
...|..+..++|+...+.+.++.++|+|+||++|+.+ + ..+.+++.|.||.|++++..|+.++.+++ ++++.
T Consensus 1212 ~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia 1283 (1674)
T KOG0951|consen 1212 KLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIA 1283 (1674)
T ss_pred cccCceEEecCCccccchHHhhhcceEEechhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHH
Confidence 9999999999999999999999999999999999877 2 47889999999999999889999999999 99999
Q ss_pred hhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCC
Q 000849 606 SQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685 (1254)
Q Consensus 606 ~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 685 (1254)
.++.+++|++++|..+.|+.|+ +|....++|||.++.||+|+++++..++..++..++.+|.++.|..+.++..+++
T Consensus 1284 ~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 9999999999999999999988 8999999999999999999999999999999999999999999999999989999
Q ss_pred CeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHH
Q 000849 686 PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765 (1254)
Q Consensus 686 ~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F 765 (1254)
+++||+++|+.|..+|..+...+..+... ++....++ .+..|++.+.+||+ |.||+..+...+-..|
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~---~l~~~~e~--------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~ 1427 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPD---YLLSELEE--------CDETLRESLKHGVG--HEGLSSNDQEIVQQLF 1427 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHH---HHHHHHhc--------chHhhhhccccccc--ccccCcchHHHHHHHH
Confidence 99999999999999999988776554221 22111111 57889999999999 9999999999999999
Q ss_pred hcCCceEEEeCcccccccCCcceee--------cccc----cCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849 766 EAGKIKVCVMSSSMCWEVPLTAHLA--------TGRK----MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 766 ~~g~~~VLVaT~~l~~Gvdip~~~V--------~~~~----~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
..|.++|+|...- .+|+-..++.| +|+. +|+++++.||+|+|.| .|.|+++|+..++++|++
T Consensus 1428 e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1428 EAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred hcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHH
Confidence 9999999999988 99999887776 4443 3899999999999988 578999999999999999
Q ss_pred hhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhc---ccccCCCcccCCCCCcccHHHHHHHHHHHHHHHh
Q 000849 834 FLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDL 910 (1254)
Q Consensus 834 ~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tf---r~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L 910 (1254)
|+.+++|+||++...|.|++|+||+.+++.++|||+||++|+| |+.+||+||++.+.+++++++++++++++++..|
T Consensus 1502 fl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl 1581 (1674)
T KOG0951|consen 1502 FLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVETTLNDL 1581 (1674)
T ss_pred hccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceecccccchhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHH
Q 000849 911 EATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKG 958 (1254)
Q Consensus 911 ~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ 958 (1254)
+.+.||++++... .+|.|+++||+++-|+..|...++.+.....
T Consensus 1582 ~~s~~i~v~dad~----~l~~Ias~y~i~y~ti~~f~~~L~~~t~~kg 1625 (1674)
T KOG0951|consen 1582 EESKCIEVDDEDD----SLGMIASYYYISYITIERFSSSLSEKTKMKG 1625 (1674)
T ss_pred hcCceEEeecccc----ccchhhhhceeeeEeeehhhhhhhhhhhhhh
Confidence 9999999987554 3999999999999999999887766554433
No 2
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6.7e-109 Score=966.27 Aligned_cols=717 Identities=48% Similarity=0.789 Sum_probs=666.6
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+++||..+|+.|..|.++|||||+||||||||||+.||||||+.||..+|++.++++.|++||+|||||||||..|.|+
T Consensus 406 m~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~gi 485 (1230)
T KOG0952|consen 406 MLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGI 485 (1230)
T ss_pred cchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCC--cCchh
Q 000849 81 IITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPE--VLDIT 158 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~--~~~~~ 158 (1254)
|||+.+++++|.+++.++.||||+|...|.|+|||||++|+++|+++|++||++||+|+||++||..||+..+ ..|+.
T Consensus 486 IiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~ 565 (1230)
T KOG0952|consen 486 IITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPR 565 (1230)
T ss_pred EEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 78999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccccCccCceeec----------------------------------------------
Q 000849 159 LGERITDLIHTAANVLDRNNLVKYGRKSGYFQSE---------------------------------------------- 192 (1254)
Q Consensus 159 ~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t---------------------------------------------- 192 (1254)
++.++.+++..++..|.+..||++|..++.+.+|
T Consensus 566 l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik 645 (1230)
T KOG0952|consen 566 LESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIK 645 (1230)
T ss_pred HHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhh
Confidence 9999999999999999999999999999999999
Q ss_pred ---ccHHHHHHHhccCCccCCCCCCChhHHHHHHHHHHHccccccCccccccC-----cHHHHHHHHHHHHHhcCcHHHH
Q 000849 193 ---KIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQLA 264 (1254)
Q Consensus 193 ---~e~~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~is~~~~~~~~l~~D~-----~a~ri~~a~~ei~~~~~~~~~a 264 (1254)
+|+.+|++|++..-.....+. .+.|+++|+|+||++..+..|+|.+|. ||+||+||+++++...+|+..+
T Consensus 646 ~R~eE~k~l~el~~~~~~~~~~~~--~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~ 723 (1230)
T KOG0952|consen 646 VREEEKKELKELNEDSCEKYPFGG--EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLS 723 (1230)
T ss_pred hhhhhHHHHHHHHhcccccccccc--cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHH
Confidence 566778888765432111112 289999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccccCCCCHHH------HHHHHh--cC---------------CCCCC------CCccccc
Q 000849 265 EKALKLSKMVTKRMWSVQTPLRQFNGIPNEI------LMKLEK--KD---------------FFLGK------PITRTVL 315 (1254)
Q Consensus 265 ~~~l~l~~~i~~~~w~~~~~L~q~~~i~~~~------~~~l~~--~~---------------~~~g~------pi~~~~~ 315 (1254)
.+++.|||||+++||...+|++||.++.... ...|+. .| ++++. |+|.+++
T Consensus 724 ~~~l~l~k~ier~mw~~~~~l~qf~~~~~~~~~~~~~l~~L~~~~~g~~w~~~~~~~k~l~~ip~v~v~a~~~p~t~~vl 803 (1230)
T KOG0952|consen 724 NRMLNLCKRIERRMWDFFIPLKQFTLLLNRKERKKLTLLLLRKDELGELWHNVPYGLKQLSGIPLVNVEALIQPITRNVL 803 (1230)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCcccchhhhhcchHHhhhhhhhccccccCchhhhhhccCCceehhhhhccchhhhh
Confidence 9999999999999999999999999877611 111111 00 11111 9999999
Q ss_pred eEEEEEeeeeeecccccCcceEEEEEEEeCCCCeEEEEEeeeeccccCCcceEEEEEeeCCCCCCCC-------------
Q 000849 316 RVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ------------- 382 (1254)
Q Consensus 316 ~~~~~~~~~~~w~~~~~g~~~~f~~~ved~~~~~il~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~------------- 382 (1254)
|+.+.++|+|.|+.++||..-.+ +|+||.+...++|.+.+.+..+..++.+.+.|++|+++|+|++
T Consensus 804 ri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~ 882 (1230)
T KOG0952|consen 804 RIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGA 882 (1230)
T ss_pred eeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCC
Confidence 99999999999999999999888 9999999999999999999999899999999999999999998
Q ss_pred ---------cccCCCCCCCCCCCCCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCC
Q 000849 383 ---------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFAR 453 (1254)
Q Consensus 383 ---------~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~ 453 (1254)
++++|...++.++++++.|.|..+|.+..++.+++ .++|+|.+.|..+++.+.|.++.
T Consensus 883 e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~---~fn~~q~~if~~~y~td~~~~~g---------- 949 (1230)
T KOG0952|consen 883 ETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK---YFNPIQTQIFHCLYHTDLNFLLG---------- 949 (1230)
T ss_pred ceeccccccceeccccccccccccccCCCcchhhccccHHHhhc---ccCCccceEEEEEeecchhhhhc----------
Confidence 78999999999999999999999999999888865 89999999999999999999999
Q ss_pred ChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEE
Q 000849 454 LPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533 (1254)
Q Consensus 454 ~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~ 533 (1254)
+|||+|||++|++++++.+.. .+++ +++|++|.++|+.+..++|.+++... |+++.
T Consensus 950 --------------------~ptgsgkt~~ae~a~~~~~~~-~p~~--kvvyIap~kalvker~~Dw~~r~~~~-g~k~i 1005 (1230)
T KOG0952|consen 950 --------------------APTGSGKTVVAELAIFRALSY-YPGS--KVVYIAPDKALVKERSDDWSKRDELP-GIKVI 1005 (1230)
T ss_pred --------------------CCccCcchhHHHHHHHHHhcc-CCCc--cEEEEcCCchhhcccccchhhhcccC-CceeE
Confidence 999999999999999988887 5555 99999999999999999999988876 99999
Q ss_pred EeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcE
Q 000849 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIR 613 (1254)
Q Consensus 534 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~r 613 (1254)
.++|+...+......++++|+||++|+.+.|.|..+..+++++++|+||.|+++++||+++|.+.++...+..+++..+|
T Consensus 1006 e~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr 1085 (1230)
T KOG0952|consen 1006 ELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVR 1085 (1230)
T ss_pred eccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchh
Confidence 99999999888888999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecC
Q 000849 614 IVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPS 693 (1254)
Q Consensus 614 ii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s 693 (1254)
.+++|.-+.|+.|+++|++..+. ++|.++.||+|++.++.+++..+++.++..|++|.++.+..+ ++..|++||+.+
T Consensus 1086 ~~glsta~~na~dla~wl~~~~~--~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~-sp~~p~lifv~s 1162 (1230)
T KOG0952|consen 1086 YLGLSTALANANDLADWLNIKDM--YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH-SPIKPVLIFVSS 1162 (1230)
T ss_pred hhhHhhhhhccHHHHHHhCCCCc--CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcC-CCCCceEEEeec
Confidence 99999999999999999999876 999999999999999999999999999999999999999998 999999999999
Q ss_pred hhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHH
Q 000849 694 RKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVV 761 (1254)
Q Consensus 694 ~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v 761 (1254)
++++...|..|+..+....++.. |+..+..+++.....++|..|+.++++|++.||+|+...||..+
T Consensus 1163 rrqtrlta~~li~~~~~~~~p~~-fl~~de~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1163 RRQTRLTALDLIASCATEDNPKQ-FLNMDELELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred ccccccchHhHHhhccCCCCchh-ccCCCHHHHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 99999999999999888877777 99888888999999999999999999999999999999888643
No 3
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.8e-103 Score=920.68 Aligned_cols=786 Identities=28% Similarity=0.448 Sum_probs=668.7
Q ss_pred cccCCCCCCCCCCCCCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHh
Q 000849 383 HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITA 462 (1254)
Q Consensus 383 ~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~ 462 (1254)
....|+..+.+ ...-....++.|.+..-+.+|. |.+||.+|+.+||.+|+++.|++||
T Consensus 75 E~~~P~s~~~~--~~~~k~~~isdld~~~rk~~f~-f~~fN~iQS~vFp~aY~SneNMLIc------------------- 132 (1230)
T KOG0952|consen 75 EVKIPASVPMP--MDGEKLLSISDLDDVGRKGFFS-FEEFNRIQSEVFPVAYKSNENMLIC------------------- 132 (1230)
T ss_pred EEecCccCCCc--cccccceeEEecchhhhhhccc-HHHHHHHHHHhhhhhhcCCCCEEEE-------------------
Confidence 45555544433 1122333455555433224444 9999999999999999999999999
Q ss_pred hCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-----cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecc
Q 000849 463 ALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-----SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTV 537 (1254)
Q Consensus 463 ~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-----~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g 537 (1254)
||||||||.+|+|+|++.+.+. ...+.+|+|||+|+||||.++++.|.++|+.. |++|..+||
T Consensus 133 -----------APTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTG 200 (1230)
T KOG0952|consen 133 -----------APTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTG 200 (1230)
T ss_pred -----------CCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-cceEEEecC
Confidence 9999999999999999999863 12335799999999999999999999999986 999999999
Q ss_pred ccccchhhcccCcEEEEcHhhHHHHHHhhhccc-ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEE
Q 000849 538 ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVA 616 (1254)
Q Consensus 538 ~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~-~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~ 616 (1254)
|+......+..++|+|+|||+||.++|++..+. +++.++++||||+|++.++||+++|.+++|+.+..+..+..+|+||
T Consensus 201 D~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivg 280 (1230)
T KOG0952|consen 201 DTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVG 280 (1230)
T ss_pred cchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEE
Confidence 999887778899999999999999999987544 7889999999999999999999999999999999988899999999
Q ss_pred ecCCCCChHHHHHhhcCC-CCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChh
Q 000849 617 LSTSLANAKDLGEWIGAS-SHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRK 695 (1254)
Q Consensus 617 lSATl~~~~~l~~~l~~~-~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~ 695 (1254)
+|||+||.+|++.||+++ ..++|.|+..+||+|+...+.+............+..-.++.+.+.+..+.+++|||++|.
T Consensus 281 LSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~ 360 (1230)
T KOG0952|consen 281 LSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRN 360 (1230)
T ss_pred eeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecCh
Confidence 999999999999999997 4789999999999999999999887766666677778889999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000849 696 YARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVM 775 (1254)
Q Consensus 696 ~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVa 775 (1254)
.+.++|+.|++.....+.... |+... .++.|++++..|+++|||||..+||..+++.|..|.++||||
T Consensus 361 ~Ti~tA~~l~~~a~~~g~~~~-f~~~~-----------~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 361 ETIRTAKKLRERAETNGEKDL-FLPSP-----------RNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred HHHHHHHHHHHHHHhcCcccc-cCCCh-----------hhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 999999999988776655544 33211 457899999999999999999999999999999999999999
Q ss_pred CcccccccCCcceee--cccc----------cCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCCccccc
Q 000849 776 SSSMCWEVPLTAHLA--TGRK----------MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVES 843 (1254)
Q Consensus 776 T~~l~~Gvdip~~~V--~~~~----------~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~pies 843 (1254)
|++++||||+|++.| .|.. .+++.+.+|+.||||||++|+.|.++++++.++.+.|..++.+..|+||
T Consensus 429 TaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES 508 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIES 508 (1230)
T ss_pred cceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHH
Confidence 999999999998777 2322 1688999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhhCccCCHHHHHHHHHHhc---ccccCCCcccCCCC---CcccHHHHHHHHHHHHHHHhHHCCCce
Q 000849 844 HLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGV---SHRHLSDHLSELVENTISDLEATRSII 917 (1254)
Q Consensus 844 ~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tf---r~~~nP~~y~~~~~---~~~~~~~~l~~~i~~~l~~L~~~g~i~ 917 (1254)
+|...|.|++||||+.|++.+.++|++||++|| |+++||.+||+... .++.+.+++.+++..++++|.+.++|.
T Consensus 509 ~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~ 588 (1230)
T KOG0952|consen 509 QLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIR 588 (1230)
T ss_pred HHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEE
Confidence 999999999999999999999999999999999 99999999999753 567788999999999999999999999
Q ss_pred ecCCC-CCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHHHHHHHhhcCcccCCC
Q 000849 918 MEDDM-DLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANP 996 (1254)
Q Consensus 918 ~~~~~-~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~~~~~~~~~~~ 996 (1254)
.|..+ .+.+|++||+||+|||+++||+.|++..++.++..++|.++|.|+||+.+++|++|.+.+++|+...-....
T Consensus 589 ~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~-- 666 (1230)
T KOG0952|consen 589 FDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYP-- 666 (1230)
T ss_pred EecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhccccccc--
Confidence 98765 599999999999999999999999998888999999999999999999999999999999999875322221
Q ss_pred CCCChHHHHHHHHHHHhcCCCCC-cchHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccc
Q 000849 997 KCTDPHVKANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLL 1075 (1254)
Q Consensus 997 ~~~~~~~K~~~Llqa~l~r~~l~-~~l~~D~~~il~~~~rl~~a~~ei~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~ 1075 (1254)
+.....|+++|+|+|++|-.+. +.|.+|..++.+++.||.++++++....+|...+.+++.|++||...+|...+|+.
T Consensus 667 -~~~~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~ 745 (1230)
T KOG0952|consen 667 -FGGEKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLK 745 (1230)
T ss_pred -ccccchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 1112789999999999999887 89999999999999999999999999999999899999999999999999999999
Q ss_pred cCCCCCHHHHHHHHcCCCCCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhccCCceEEEEEEecccccccCCceEEE
Q 000849 1076 QLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTL 1155 (1254)
Q Consensus 1076 Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~~l 1155 (1254)
|++..-. ++ .+.+ . .+..+..++...+....+ ...+.+..+|.++++..+.+. + .++..+
T Consensus 746 qf~~~~~---~~-~~~~----~---~l~~L~~~~~g~~w~~~~----~~~k~l~~ip~v~v~a~~~p~---t--~~vlri 805 (1230)
T KOG0952|consen 746 QFTLLLN---RK-ERKK----L---TLLLLRKDELGELWHNVP----YGLKQLSGIPLVNVEALIQPI---T--RNVLRI 805 (1230)
T ss_pred cCCcccc---hh-hhhc----c---hHHhhhhhhhccccccCc----hhhhhhccCCceehhhhhccc---h--hhhhee
Confidence 9998655 33 3333 1 333444445555554332 228899999999999888763 2 355667
Q ss_pred EEEEEecCCCCCCcCccccCCCCCCCcccEEEEEEeCCCCeEEEEEEeeecc---cceEEEEEEeec-CCCceEEEEEEE
Q 000849 1156 QVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQR---KSRAKLDFAAPV-EGGKKTYTLDFM 1231 (1254)
Q Consensus 1156 ~v~l~r~~~~~~~~~~v~~p~~p~~k~e~wwv~v~d~~~~~l~~~~~~~~~~---~~~~~~~f~~p~-~~g~~~~~v~~~ 1231 (1254)
.+.+.+.+.+ ...+| .+- +-.+++.|.+.+.+++++...+.. ..+.-+.|.+|. +|-+.++..++.
T Consensus 806 ~~~~~~~f~w---~~~~h-----g~~--g~~i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~ 875 (1230)
T KOG0952|consen 806 EVAITPDFEW---NDGIH-----GKA--GQPIFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAV 875 (1230)
T ss_pred eeccCCceEE---ecccc-----ccc--CceeEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeee
Confidence 7777665422 11222 111 222889999989999998887652 234667777787 588899999999
Q ss_pred eCCccccCeEEEEEEE
Q 000849 1232 CDSYMGCDQEYSFTVD 1247 (1254)
Q Consensus 1232 sD~y~G~D~~~~~~~~ 1247 (1254)
||+|+|++..+.+++.
T Consensus 876 s~~~l~~e~~~~~s~~ 891 (1230)
T KOG0952|consen 876 SDNWLGAETVYPLSFQ 891 (1230)
T ss_pred cccccCCceecccccc
Confidence 9999999999988764
No 4
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.3e-103 Score=922.09 Aligned_cols=795 Identities=27% Similarity=0.474 Sum_probs=711.6
Q ss_pred CCCCCCCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeee
Q 000849 392 PPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVL 471 (1254)
Q Consensus 392 ~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~vi 471 (1254)
...++..+.+.|.++ ..+|.+...||++|+.+.++++.+++|+++|
T Consensus 286 ~~Ekl~~iselP~Wn------q~aF~g~~sLNrIQS~v~daAl~~~EnmLlC---------------------------- 331 (1674)
T KOG0951|consen 286 KEEKLVKISELPKWN------QPAFFGKQSLNRIQSKVYDAALRGDENMLLC---------------------------- 331 (1674)
T ss_pred ccceeEeecCCcchh------hhhcccchhhhHHHHHHHHHHhcCcCcEEEe----------------------------
Confidence 444555555666554 3456668889999999999999999999999
Q ss_pred eeccCCCchHHHHHHHHHHHHHhhcC------CCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh
Q 000849 472 QLAPTGSGKTICAEFAILRNHQRASE------TGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL 545 (1254)
Q Consensus 472 v~apTGsGKT~~~~l~il~~l~~~~~------~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 545 (1254)
||||+|||.++++.|++.+..+.+ -+.++++|++|+++|++++...|.+++..+ |++|..+|||.......
T Consensus 332 --APTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~q 408 (1674)
T KOG0951|consen 332 --APTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQ 408 (1674)
T ss_pred --ccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhh
Confidence 999999999999999999887532 124699999999999999999999999886 99999999999988888
Q ss_pred cccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChH
Q 000849 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAK 625 (1254)
Q Consensus 546 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~ 625 (1254)
+..++|+|||||+||.+.|+..++...+-++++|+||+|++.|+||+.+|.+++|...........+|++|+|||+||++
T Consensus 409 ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~ 488 (1674)
T KOG0951|consen 409 IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE 488 (1674)
T ss_pred hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchh
Confidence 89999999999999999999888888899999999999999999999999999999988887788999999999999999
Q ss_pred HHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHH
Q 000849 626 DLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705 (1254)
Q Consensus 626 ~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~ 705 (1254)
|++.|++..+.++|.|++++||+|+.+.+.+........++++|+..+|+.+.++ ....|+||||++|+++-++|+.+.
T Consensus 489 DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~-agk~qVLVFVHsRkET~ktA~aIR 567 (1674)
T KOG0951|consen 489 DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEH-AGKNQVLVFVHSRKETAKTARAIR 567 (1674)
T ss_pred hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHh-CCCCcEEEEEEechHHHHHHHHHH
Confidence 9999999999999999999999999999999999998899999999999999999 445999999999999999999999
Q ss_pred HHhhccCccccccccc---ChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccc
Q 000849 706 IYSCKDSDQKSAFLLC---SAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782 (1254)
Q Consensus 706 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~G 782 (1254)
+.+...+...+ |+.. +.+.+........+..|++++.+|+++||+||++.+|..+++.|++|.++|+|+|.+++||
T Consensus 568 d~~le~dtls~-fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawg 646 (1674)
T KOG0951|consen 568 DKALEEDTLSR-FMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWG 646 (1674)
T ss_pred HHHhhhhHHHH-HHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhh
Confidence 77765543333 4422 2334555566778999999999999999999999999999999999999999999999999
Q ss_pred cCCcceee--ccc----------ccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCCcccccccchhHH
Q 000849 783 VPLTAHLA--TGR----------KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLH 850 (1254)
Q Consensus 783 vdip~~~V--~~~----------~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~pies~l~~~l~ 850 (1254)
||+|+|.| .|. .+.++.+.+||.|||||+++|+.|..++.+...+..+|..++++++|+||++...+.
T Consensus 647 vnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~ 726 (1674)
T KOG0951|consen 647 VNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLA 726 (1674)
T ss_pred cCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhh
Confidence 99999888 222 127899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCccCCHHHHHHHHHHhc---ccccCCCcccCCCCCcc-cHHHHHHHHHHHHHHHhHHCCCceecCC-CCCC
Q 000849 851 DNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHR-HLSDHLSELVENTISDLEATRSIIMEDD-MDLC 925 (1254)
Q Consensus 851 ~~l~~ei~~~~i~~~~d~~~~l~~tf---r~~~nP~~y~~~~~~~~-~~~~~l~~~i~~~l~~L~~~g~i~~~~~-~~~~ 925 (1254)
|.+|+||+.| +++..|+++|+.+|| |+.+||..|++.....+ -+.....+++++|...|.++|+|.++.. +.++
T Consensus 727 d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~ 805 (1674)
T KOG0951|consen 727 DCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQ 805 (1674)
T ss_pred hhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCccc
Confidence 9999999999 999999999999999 99999999999875443 3344455899999999999999999864 4699
Q ss_pred cCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHHHHHHHhhcCcccCCCCCCChHHHH
Q 000849 926 PSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKA 1005 (1254)
Q Consensus 926 ~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~ 1005 (1254)
+|++|+++|+|||.+.++..+++.|++.++..++..+++.+.||+.+.+|.+|+.+++.+..+.|+++.+ ++..|..|+
T Consensus 806 ~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~~l~~~vpIpire-~l~~p~aki 884 (1674)
T KOG0951|consen 806 ATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELAKLLERVPIPIRE-NLDEPSAKI 884 (1674)
T ss_pred chhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhhhhcccCCcCchh-ccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998864 578899999
Q ss_pred HHHHHHHhcCCCCC-cchHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q 000849 1006 NALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDL 1084 (1254)
Q Consensus 1006 ~~Llqa~l~r~~l~-~~l~~D~~~il~~~~rl~~a~~ei~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 1084 (1254)
++|+|+|++++.+. ..|..|+.++-+++.|+++|+++|+..+||...+..++.+|+|+.+++|+...||.|+++++.+.
T Consensus 885 nvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~v~~r~w~~~~plrqf~~~~~ev 964 (1674)
T KOG0951|consen 885 NVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKMVEKRMWPTQTPLRQFKGCPKEV 964 (1674)
T ss_pred HHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhHhhhhcccccCchhhcCCCCHHH
Confidence 99999999999998 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhccCCceEEEEEEecccccccCCceEEEEEEEEecCC
Q 000849 1085 AKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLG 1164 (1254)
Q Consensus 1085 ~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~~l~v~l~r~~~ 1164 (1254)
++++.++. + ....+..+++.+...+.+ .++.+.-+..++.+||++.++..+++ |+ .+.+.+.++++.+++
T Consensus 965 ~~~lE~k~---~-~~~r~~~l~~~elg~lI~-~~k~G~~l~~~~~~fpk~s~~~~vqp---it--r~~~~~~l~i~~~f~ 1034 (1674)
T KOG0951|consen 965 LRRLEKKE---L-PWGRYYDLDPAELGELIG-VPKMGKPLHLFIRQFPKLSVSAHVQP---IT--RSVYRVELTITPDFD 1034 (1674)
T ss_pred HHHHHhcc---C-cchhhhccCHHHHHHHhc-CcccChhHHHHHHhcccceeeeeeee---ee--eeEEEEEEEEeeccc
Confidence 99999877 2 345556667777777776 55677788889999999999999987 44 567788888888764
Q ss_pred CCCCcCccccCCCCCCCcccEEEEEEeCCCCeEEEEEEeeecccceEEEEEEeecCCCceEEEEEEEeCCccccCeEEEE
Q 000849 1165 GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSF 1244 (1254)
Q Consensus 1165 ~~~~~~~v~~p~~p~~k~e~wwv~v~d~~~~~l~~~~~~~~~~~~~~~~~f~~p~~~g~~~~~v~~~sD~y~G~D~~~~~ 1244 (1254)
+ +..+| ...|+||++|.|....+|++...+.+.+. ...+.|.+|.--++..|.+.++||.|+|.....++
T Consensus 1035 w---d~~vh------~~~e~F~i~ved~dge~il~~e~~~~~k~-~~~v~ft~~~~~~pP~~fi~lvSd~wl~s~~~~Pv 1104 (1674)
T KOG0951|consen 1035 W---DDKVH------GSVEPFWIIVEDTDGEKILHHEFFLLKKK-EHTVNFTVPLFEPPPQYFIRLVSDRWLHSETVLPV 1104 (1674)
T ss_pred c---hhhhc------ccccceEEEEEccCccceeeeeeEEeccC-ceEEEEEeecCCCCCceEEEEeeccccCCCccccc
Confidence 3 34566 35689999999999999999998888655 78999999986568999999999999999999999
Q ss_pred EEE
Q 000849 1245 TVD 1247 (1254)
Q Consensus 1245 ~~~ 1247 (1254)
+|+
T Consensus 1105 sfr 1107 (1674)
T KOG0951|consen 1105 SFR 1107 (1674)
T ss_pred chh
Confidence 875
No 5
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-85 Score=828.72 Aligned_cols=640 Identities=25% Similarity=0.344 Sum_probs=535.2
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|.+|+|+|++|++..+..++|++++ ||||||||++|++|+++.+.. +
T Consensus 21 ~~~l~p~Q~~ai~~~~~~g~nvlv~------------------------------APTGSGKTlia~lail~~l~~---~ 67 (737)
T PRK02362 21 IEELYPPQAEAVEAGLLDGKNLLAA------------------------------IPTASGKTLIAELAMLKAIAR---G 67 (737)
T ss_pred CCcCCHHHHHHHHHHHhCCCcEEEE------------------------------CCCcchHHHHHHHHHHHHHhc---C
Confidence 8899999999999866666788888 999999999999999998864 5
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEE
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 578 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~li 578 (1254)
+ +++|++|+++||.|++++|++ +... |+++..++|+...+...+.+++|+|+|||+|+.++++. ..++++++++
T Consensus 68 ~--kal~i~P~raLa~q~~~~~~~-~~~~-g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lv 141 (737)
T PRK02362 68 G--KALYIVPLRALASEKFEEFER-FEEL-GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCV 141 (737)
T ss_pred C--cEEEEeChHHHHHHHHHHHHH-hhcC-CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEE
Confidence 5 899999999999999999995 6554 89999999998776666677899999999999999863 2458899999
Q ss_pred EecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeec
Q 000849 579 IIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV 657 (1254)
Q Consensus 579 IiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~ 657 (1254)
|+||+|++++ .||+.+|.++++++.+ ..+.|+|++|||++|.+++++|++... +.+.+||+++...+...
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~----~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~ 212 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRL----NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYG 212 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhc----CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecC
Confidence 9999999997 7999999999999865 467899999999999999999998763 67788999988765432
Q ss_pred cCCChHHHHHhhC----HHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhc
Q 000849 658 DITNFEARMKAMT----KPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSII 733 (1254)
Q Consensus 658 ~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 733 (1254)
....+......+. ...+..+.+.+..++++||||+|++.|+.+|..|......... ......+....+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~------~~~~~~~~~~~~~l 286 (737)
T PRK02362 213 GAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLT------AAERAELAELAEEI 286 (737)
T ss_pred CeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHH
Confidence 2211111111111 2344455555567899999999999999999999876432110 01112222222222
Q ss_pred -------ChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcc-eee-c----c-----ccc
Q 000849 734 -------QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA-HLA-T----G-----RKM 795 (1254)
Q Consensus 734 -------~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~-~~V-~----~-----~~~ 795 (1254)
.+..|.+++..||++|||||++.+|..+++.|++|.++|||||+++++|||+|+ .+| . + ..|
T Consensus 287 ~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 287 REVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred HhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 467889999999999999999999999999999999999999999999999994 444 2 2 257
Q ss_pred CCHHHHHHhhcccCCCCCCCCceEEEEccCC--cHHHHHHhhc-CCccccccc--chhHHHHHHHHHhhCccCCHHHHHH
Q 000849 796 LILTTLLQMMGHAGRPLLDNSEKCVILCHAP--HKEYYKKFLY-EAFPVESHL--HHFLHDNFNAEIVAGVIENKQDAVD 870 (1254)
Q Consensus 796 ~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~--~~~~~~~~l~-~~~pies~l--~~~l~~~l~~ei~~~~i~~~~d~~~ 870 (1254)
++..+|.||+|||||+|.|..|.|++++... ..++|++++. ++.|++|++ ...+.++++++|+.|++.+.+|+++
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~ 446 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLE 446 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHH
Confidence 9999999999999999999999999999875 3467888884 899999999 4589999999999999999999999
Q ss_pred HHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcc
Q 000849 871 YLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSL 950 (1254)
Q Consensus 871 ~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l 950 (1254)
|+++||-..++ ..+++++++++++++.|.+.|||+.++ +.+.||++|+++|+||++|.|+..|...+
T Consensus 447 ~l~~Tf~~~~~------------~~~~~l~~~v~~~l~~L~~~~~i~~~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l 513 (737)
T PRK02362 447 FLEATFYATQT------------DDTGRLERVVDDVLDFLERNGMIEEDG-ETLEATELGHLVSRLYIDPLSAAEIIDGL 513 (737)
T ss_pred HHHhChHHhhc------------cchHHHHHHHHHHHHHHHHCCCeeecC-CeEeEChHHHHHHHhcCCHHHHHHHHHHh
Confidence 99999922222 124688999999999999999999754 46999999999999999999999999988
Q ss_pred cCcC--cHHHHHHHHhCccccccCCCChhhHHHHHHHH--------hhcCcccCCCCCCC--hHHHHHHHHHHHhcCCCC
Q 000849 951 TSKT--KMKGLLEVLASASEYAQLPIRPGEEELVRRLI--------NHQRFSFANPKCTD--PHVKANALLQAHFSARHM 1018 (1254)
Q Consensus 951 ~~~~--~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~--------~~~~~~~~~~~~~~--~~~K~~~Llqa~l~r~~l 1018 (1254)
+... +..++|+++|.++||..+++|++|...++++. ..+|.+.....+.. ++.|+++|||+|++|.++
T Consensus 514 ~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~ 593 (737)
T PRK02362 514 EAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDE 593 (737)
T ss_pred hhcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCH
Confidence 8765 67899999999999999999999999988875 34565444333333 688999999999999986
Q ss_pred Cc-----ch-HHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCC
Q 000849 1019 EG-----NL-KLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENP 1092 (1254)
Q Consensus 1019 ~~-----~l-~~D~~~il~~~~rl~~a~~ei~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~ 1092 (1254)
+. .+ .+|++.+++++.||++|++++|.. +|+..+..+++|+|||.||+|++++||+||||+++.++++|++.|
T Consensus 594 ~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~g 672 (737)
T PRK02362 594 ERITERYGVGPGDIRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAG 672 (737)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcC
Confidence 61 22 789999999999999999999776 456778899999999999999999999999999999999999999
Q ss_pred CCCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhccC
Q 000849 1093 GRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRF 1131 (1254)
Q Consensus 1093 ~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~ 1131 (1254)
++|++||++++++++.++ ++++..+.|.+.+..+
T Consensus 673 ---i~s~~dl~~~~~~~l~~~--~g~~~~~~i~~~~~~~ 706 (737)
T PRK02362 673 ---IESRADLRAADKSVVLAI--LGEKIAENILEQAGRR 706 (737)
T ss_pred ---CCCHHHHHhCCHHHHHHH--HCHHHHHHHHHHhCcc
Confidence 999999999999999888 7899999999998744
No 6
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-82 Score=800.19 Aligned_cols=636 Identities=24% Similarity=0.334 Sum_probs=519.7
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|..|+|+|.++++..+..++|++++ ||||||||++|++|+++.+.. .+
T Consensus 21 ~~~l~~~Q~~ai~~~~~~g~nvlv~------------------------------apTGsGKT~~~~l~il~~l~~--~~ 68 (720)
T PRK00254 21 IEELYPPQAEALKSGVLEGKNLVLA------------------------------IPTASGKTLVAEIVMVNKLLR--EG 68 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEEE------------------------------CCCCcHHHHHHHHHHHHHHHh--cC
Confidence 8999999999999866566788888 999999999999999988765 24
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEE
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 578 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~li 578 (1254)
+ ++||++|+++|+.|++++|++ +.. .|+++..++|+...+...+.+++|+|+|||+|+.++++. ..++++++++
T Consensus 69 ~--~~l~l~P~~aLa~q~~~~~~~-~~~-~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~--~~~l~~l~lv 142 (720)
T PRK00254 69 G--KAVYLVPLKALAEEKYREFKD-WEK-LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHG--SSWIKDVKLV 142 (720)
T ss_pred C--eEEEEeChHHHHHHHHHHHHH-Hhh-cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCC--chhhhcCCEE
Confidence 4 899999999999999999986 554 489999999998776666677899999999999988752 3468899999
Q ss_pred EecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEe--
Q 000849 579 IIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQ-- 655 (1254)
Q Consensus 579 IiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~-- 655 (1254)
|+||+|.+++ .+|..++.+++++ ....|+|++|||++|++++++|++... +.+..||+++...+.
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~ 210 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQ 210 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecC
Confidence 9999999987 7999999888765 356899999999999999999998763 566788988854322
Q ss_pred eccCCCh--HHH-HHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccC-hhchhhHHh
Q 000849 656 GVDITNF--EAR-MKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS-AKEVEPHVS 731 (1254)
Q Consensus 656 ~~~~~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 731 (1254)
++..... ... ...+...+++ .+..++++||||+||+.|+.+|..+...+.. ++... ...+....+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~~~~ 279 (720)
T PRK00254 211 GFLFWEDGKIERFPNSWESLVYD----AVKKGKGALVFVNTRRSAEKEALELAKKIKR-------FLTKPELRALKELAD 279 (720)
T ss_pred CeeeccCcchhcchHHHHHHHHH----HHHhCCCEEEEEcChHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHH
Confidence 1111100 000 1122222333 3356889999999999999999988765432 21111 122222222
Q ss_pred h----cChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcc-eee-cc--------cccCC
Q 000849 732 I----IQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA-HLA-TG--------RKMLI 797 (1254)
Q Consensus 732 ~----~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~-~~V-~~--------~~~~s 797 (1254)
. ..+..|.+++..||++|||||++++|..+++.|++|.++|||||+++++|||+|+ .+| .+ ...++
T Consensus 280 ~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~ 359 (720)
T PRK00254 280 SLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIP 359 (720)
T ss_pred HHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCC
Confidence 2 3467889999999999999999999999999999999999999999999999994 333 21 12368
Q ss_pred HHHHHHhhcccCCCCCCCCceEEEEccCCc-HHHHHHhhc-CCccccccc--chhHHHHHHHHHhhCccCCHHHHHHHHH
Q 000849 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPH-KEYYKKFLY-EAFPVESHL--HHFLHDNFNAEIVAGVIENKQDAVDYLT 873 (1254)
Q Consensus 798 ~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~-~~~~~~~l~-~~~pies~l--~~~l~~~l~~ei~~~~i~~~~d~~~~l~ 873 (1254)
..+|.||+|||||+|.|..|.+++++...+ .+++++++. ++.++.|.+ ...+.++++++|+.+.+.+.+|+++|++
T Consensus 360 ~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~ 439 (720)
T PRK00254 360 VLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLE 439 (720)
T ss_pred HHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999999999999998765 566777754 444555655 3467899999999999999999999999
Q ss_pred HhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccC-
Q 000849 874 WTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTS- 952 (1254)
Q Consensus 874 ~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~- 952 (1254)
+||-..+||++|+ +.+.+++++..|.++|||+.++++.+.||++|+++|+|||+|.|+..|...++.
T Consensus 440 ~Tf~~~~~~~~~~------------~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~ 507 (720)
T PRK00254 440 RTFYAHQRKDLYS------------LEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKI 507 (720)
T ss_pred hCHHHHhhcChHh------------HHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9996678888875 335789999999999999998777899999999999999999999999988765
Q ss_pred --cCcHHHHHHHHhCccccccCCCChhhHHHHHHHHh--------hcCcccCCCCCCC--hHHHHHHHHHHHhcCCCCCc
Q 000849 953 --KTKMKGLLEVLASASEYAQLPIRPGEEELVRRLIN--------HQRFSFANPKCTD--PHVKANALLQAHFSARHMEG 1020 (1254)
Q Consensus 953 --~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~~--------~~~~~~~~~~~~~--~~~K~~~Llqa~l~r~~l~~ 1020 (1254)
.++..++++++|.++||..+++|++|...+.+... .+|++... ++.+ ++.|+++|||+|++|.+++.
T Consensus 508 ~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~k~~~ll~~~~~~~~~~~ 586 (720)
T PRK00254 508 EKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDY-KFQKFLRAFKTAKVLLDWINEVPEGE 586 (720)
T ss_pred ccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhh-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 66789999999999999999999999888874432 33432211 2333 67899999999999999987
Q ss_pred ch------HHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCC
Q 000849 1021 NL------KLDQEKVLLSASRLLQAMVDVISSNGWLSLAL-LAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPG 1093 (1254)
Q Consensus 1021 ~l------~~D~~~il~~~~rl~~a~~ei~~~~~~~~~~~-~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~~ 1093 (1254)
.+ .+|++.+++++.||++||++++...||.+..+ .+.+|+|||+||+|++++||.|+||+|+.++++|.++|
T Consensus 587 ~~~~~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g- 665 (720)
T PRK00254 587 IVETYNIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAG- 665 (720)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHcc-
Confidence 66 89999999999999999999998555422111 33489999999999999999999999999999999999
Q ss_pred CCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhccC
Q 000849 1094 RSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRF 1131 (1254)
Q Consensus 1094 ~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~ 1131 (1254)
++|+.++++++++++.++.+++++..+.|.++++..
T Consensus 666 --~~s~~~i~~a~~~el~~~~gi~~~~a~~i~~~~~~~ 701 (720)
T PRK00254 666 --FRSIEDIVNAKPSELLKVEGIGAKIVEGIFKHLGVE 701 (720)
T ss_pred --CCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 999999999999999999889999999999998844
No 7
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.8e-79 Score=768.72 Aligned_cols=626 Identities=24% Similarity=0.301 Sum_probs=515.2
Q ss_pred CcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCC
Q 000849 421 LFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGV 500 (1254)
Q Consensus 421 ~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~ 500 (1254)
.++++|.++++.+.. ++|++++ ||||||||+++++++++.+.. ++
T Consensus 22 ~l~~~Q~~ai~~l~~-~~nvlv~------------------------------apTGSGKTl~a~lail~~l~~---~~- 66 (674)
T PRK01172 22 ELYDHQRMAIEQLRK-GENVIVS------------------------------VPTAAGKTLIAYSAIYETFLA---GL- 66 (674)
T ss_pred CCCHHHHHHHHHHhc-CCcEEEE------------------------------CCCCchHHHHHHHHHHHHHHh---CC-
Confidence 378888888887644 3456666 999999999999999988775 44
Q ss_pred cEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEe
Q 000849 501 MRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFII 580 (1254)
Q Consensus 501 ~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIi 580 (1254)
+++|++|+++||.|++++|++ +.. .|.++...+|+...+...+..++|+|+|||+++.+++++. ..+++++++|+
T Consensus 67 -k~v~i~P~raLa~q~~~~~~~-l~~-~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvVi 141 (674)
T PRK01172 67 -KSIYIVPLRSLAMEKYEELSR-LRS-LGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVA 141 (674)
T ss_pred -cEEEEechHHHHHHHHHHHHH-Hhh-cCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEE
Confidence 899999999999999999986 444 4899999999887666566788999999999999988754 35889999999
Q ss_pred cccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccC
Q 000849 581 DELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDI 659 (1254)
Q Consensus 581 DEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~ 659 (1254)
||+|++++ .+|+.++.++++++.+ ..+.|+|++|||++|.+++++|++... +....||+|+...+.....
T Consensus 142 DEaH~l~d~~rg~~le~ll~~~~~~----~~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~ 212 (674)
T PRK01172 142 DEIHIIGDEDRGPTLETVLSSARYV----NPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKR 212 (674)
T ss_pred ecchhccCCCccHHHHHHHHHHHhc----CcCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCe
Confidence 99999987 7999999999888765 467999999999999999999998764 6677889998866543221
Q ss_pred CChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHH
Q 000849 660 TNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLR 739 (1254)
Q Consensus 660 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 739 (1254)
....... .........+.+....++++||||++++.|+.++..|......... +... .......+..|.
T Consensus 213 ~~~~~~~-~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~----~~~~------~~~~~~~~~~L~ 281 (674)
T PRK01172 213 LILDGYE-RSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFND----FKVS------SENNNVYDDSLN 281 (674)
T ss_pred eeecccc-cccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccc----cccc------ccccccccHHHH
Confidence 1110000 0011123334444467899999999999999999999776443211 1000 001223457888
Q ss_pred HHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcceee-c---------ccccCCHHHHHHhhcccC
Q 000849 740 ATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA-T---------GRKMLILTTLLQMMGHAG 809 (1254)
Q Consensus 740 ~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~~~V-~---------~~~~~s~~~~~Qr~GRaG 809 (1254)
+++..||++|||+|++++|..+++.|++|.++|||||+++++|+|+|+..| . +..++|..+|.||+||||
T Consensus 282 ~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAG 361 (674)
T PRK01172 282 EMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAG 361 (674)
T ss_pred HHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999995444 1 223589999999999999
Q ss_pred CCCCCCCceEEEEccCCc-HHHHHHhh-cCCcccccccchh--HHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcc
Q 000849 810 RPLLDNSEKCVILCHAPH-KEYYKKFL-YEAFPVESHLHHF--LHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYY 885 (1254)
Q Consensus 810 R~g~d~~G~~iil~~~~~-~~~~~~~l-~~~~pies~l~~~--l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y 885 (1254)
|+|.|..|.+++++...+ .+++++++ .++.|+||++... ...+++++|+.|.+.+.+|+++|++|||-..+|+
T Consensus 362 R~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~--- 438 (674)
T PRK01172 362 RPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNG--- 438 (674)
T ss_pred CCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCc---
Confidence 999999999999887655 67888888 6999999999754 4445669999999999999999999999444442
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhC
Q 000849 886 NLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLAS 965 (1254)
Q Consensus 886 ~~~~~~~~~~~~~l~~~i~~~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~ 965 (1254)
.+++++.++++++.|.++|||+.+ +.+.||++|+++|+||++|.|+..|..+++..++...+|+++|.
T Consensus 439 ----------~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~ 506 (674)
T PRK01172 439 ----------VDEIDYYIESSLKFLKENGFIKGD--VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISL 506 (674)
T ss_pred ----------hHHHHHHHHHHHHHHHHCCCcccC--CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhc
Confidence 257889999999999999999743 46999999999999999999999999999999899999999999
Q ss_pred ccccccCCCChhhHHHHHHHHhhcCcccCCCCCCChHHHHHHHHHHHhcCCCCCc------chHHhHHHHHHHHHHHHHH
Q 000849 966 ASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEG------NLKLDQEKVLLSASRLLQA 1039 (1254)
Q Consensus 966 s~Ef~~l~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~~------~l~~D~~~il~~~~rl~~a 1039 (1254)
++|| +|+|..|+..+.++...++.. +...++.|+++|||+|++|.+++. .-.+|++.+++.+.|+..|
T Consensus 507 ~~e~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a 580 (674)
T PRK01172 507 CREI--IPANTRDDYYAMEFLEDIGVI----DGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYS 580 (674)
T ss_pred Cccc--cccccchHHHHHHHHHHhccc----cchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 9999 888888888888887776641 334578999999999999998762 2378899999999999888
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHcCCCCCccCHHHHhcCCHHHHHHHhcCChh
Q 000849 1040 MVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDV 1119 (1254)
Q Consensus 1040 ~~ei~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~ 1119 (1254)
+..++.. ++...+..+-.|.++|+||+|++++||+|||||++.++++|+++| ++|++|+++++++++.++++++++
T Consensus 581 ~~~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g---~~~~~di~~~~~~~~~~i~~~~~~ 656 (674)
T PRK01172 581 LARLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAG---FKTVDDIARSSPERIKKIYGFSDT 656 (674)
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHHhccCHH
Confidence 8888865 445555566678888999999999999999999999999999999 999999999999999999999999
Q ss_pred hHHHHHHHhccC
Q 000849 1120 QLLDIARFCNRF 1131 (1254)
Q Consensus 1120 ~~~~i~~~~~~~ 1131 (1254)
+.+.|.+.++.+
T Consensus 657 ~~~~i~~~~~~~ 668 (674)
T PRK01172 657 LANAIVNRAMKI 668 (674)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 8
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=9.1e-67 Score=640.37 Aligned_cols=661 Identities=26% Similarity=0.327 Sum_probs=504.6
Q ss_pred hHHHHhcc--CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHH
Q 000849 411 SYEALYQN--YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 411 ~~~~~~~~--~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~i 488 (1254)
.+.+++.. +.++++.|+.++...+.++.|++|| +|||||||++++++|
T Consensus 19 ~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~------------------------------aPTgsGKTlIA~lai 68 (766)
T COG1204 19 RVLEILKGDGIDELFNPQQEAVEKGLLSDENVLIS------------------------------APTGSGKTLIALLAI 68 (766)
T ss_pred HHHHHhccCChHHhhHHHHHHhhccccCCCcEEEE------------------------------cCCCCchHHHHHHHH
Confidence 34444444 4455566666666655557899999 999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhc
Q 000849 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 568 (1254)
Q Consensus 489 l~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~ 568 (1254)
++.+.+. ++ ++||++|+|+||.|++++|+ ++... |++|...|||.....+.+..++|+|+|||+|+.++|+...
T Consensus 69 ~~~l~~~--~~--k~vYivPlkALa~Ek~~~~~-~~~~~-GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~ 142 (766)
T COG1204 69 LSTLLEG--GG--KVVYIVPLKALAEEKYEEFS-RLEEL-GIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS 142 (766)
T ss_pred HHHHHhc--CC--cEEEEeChHHHHHHHHHHhh-hHHhc-CCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc
Confidence 9999872 45 89999999999999999999 56665 9999999999998888889999999999999999998654
Q ss_pred ccccceeeEEEecccccccCC-CccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCC-eeEecCCCCc
Q 000849 569 RKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH-GVFNFPPGVR 646 (1254)
Q Consensus 569 ~~~l~~v~liIiDEaH~l~~~-~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~-~~~~~~~~~r 646 (1254)
++..+++|||||+|.+.++ ||+.+|.++++++... ..+|++++|||+||++++++|+++... ..+.+.+..+
T Consensus 143 --~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~----~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~ 216 (766)
T COG1204 143 --WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN----ELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRR 216 (766)
T ss_pred --hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC----cceEEEEEeeecCCHHHHHHHhCCcccccCCCCccccc
Confidence 7899999999999999996 9999999999998773 458999999999999999999999864 4566777788
Q ss_pred ccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCccccccc--ccChh
Q 000849 647 PVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL--LCSAK 724 (1254)
Q Consensus 647 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~--~~~~~ 724 (1254)
+++....+........ ..........+..+...+..++++||||+||+.+..+|+.+............ .. .....
T Consensus 217 ~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~-~~~~~~~a~ 294 (766)
T COG1204 217 GVPYVGAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDE-KIVLDEGAS 294 (766)
T ss_pred CCccceEEEEecCccc-cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhh-hhhcccccc
Confidence 8888777766553332 11122234456666777799999999999999999999999865544322211 10 00111
Q ss_pred chh-hHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcceee------ccc----
Q 000849 725 EVE-PHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA------TGR---- 793 (1254)
Q Consensus 725 ~l~-~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~~~V------~~~---- 793 (1254)
.+. .......+..|.+++..|+++||+||+.++|..+++.|++|.++|||||+|++||||+|++.| .++
T Consensus 295 ~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g 374 (766)
T COG1204 295 PILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG 374 (766)
T ss_pred ccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCC
Confidence 111 112233458999999999999999999999999999999999999999999999999997776 222
Q ss_pred -ccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc-HHHHHHhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHH
Q 000849 794 -KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH-KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDY 871 (1254)
Q Consensus 794 -~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~-~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~ 871 (1254)
.+++..+++||.|||||+|.|+.|.++++++..+ ..++........|.+ +...+.+..+.+...+++.+..++++|
T Consensus 375 ~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~ 452 (766)
T COG1204 375 IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSW 452 (766)
T ss_pred eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhH
Confidence 4589999999999999999999999999995444 444444433333322 333444444788899999999999999
Q ss_pred HHHhc---ccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHh
Q 000849 872 LTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSS 948 (1254)
Q Consensus 872 l~~tf---r~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~ 948 (1254)
+..+| |+..||.+|+. ......+..++..|.+.+.+...+...+.+|++|+.+|++||+|.|++.|..
T Consensus 453 ~~~~~f~~~t~~~~~~~~~---------~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~ 523 (766)
T COG1204 453 LELTDFYERTFYNPQTYGE---------GMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRD 523 (766)
T ss_pred HHHHHHHHHHHhhhhhccc---------cchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHH
Confidence 99999 99999998875 2345678899999999984444455679999999999999999999999998
Q ss_pred cccCcC---cHHHHHHHHhCccccccCCCChhhHHHH--HHHHhhcCcccCCC----CCC----ChHHHHHHHHHHHhcC
Q 000849 949 SLTSKT---KMKGLLEVLASASEYAQLPIRPGEEELV--RRLINHQRFSFANP----KCT----DPHVKANALLQAHFSA 1015 (1254)
Q Consensus 949 ~l~~~~---~~~~ll~ils~s~Ef~~l~~R~~e~~~l--~~l~~~~~~~~~~~----~~~----~~~~K~~~Llqa~l~r 1015 (1254)
.+.... +..++++.++.++||..++.|..+...+ ..+.+..++..... ... -...|....+-+|+++
T Consensus 524 ~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~ 603 (766)
T COG1204 524 LLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINE 603 (766)
T ss_pred HHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 766654 6789999999999999999998887664 33344444332110 111 1245677777788877
Q ss_pred CCCC------cchHHhHHHHHHHHHHH-------HHHHHHHHHhcCcHHHH-HHHHHHHHHHHhccC-CCCCccccCCCC
Q 000849 1016 RHME------GNLKLDQEKVLLSASRL-------LQAMVDVISSNGWLSLA-LLAMEVSQMVTQGMW-EHDSMLLQLPHF 1080 (1254)
Q Consensus 1016 ~~l~------~~l~~D~~~il~~~~rl-------~~a~~ei~~~~~~~~~~-~~~~~l~q~i~q~~w-~~~~~L~Qlp~i 1080 (1254)
.+.. ....+|+..+...+.|+ ..++-..+...+..... ...-.+..++..|+. ++..+|..++++
T Consensus 604 ~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~ 683 (766)
T COG1204 604 ADEDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAAERLAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGV 683 (766)
T ss_pred CcHHHHHHHhCcchhhHHhhcchhhhhhhhhhhhhhhhhhhHhhhCCCccccccchhhhhhhhcCCChhhhccccccccc
Confidence 6543 12467888888888888 66666665544432211 344667888999998 778889999999
Q ss_pred CHHHHHHHHcCCCCCccCHHHHh-cCCHHHHHHHhcCChhhHHHHHHHhc
Q 000849 1081 TKDLAKRCQENPGRSIETVFDLL-EMEDDERRELLQMSDVQLLDIARFCN 1129 (1254)
Q Consensus 1081 ~~~~~~~l~~~~~~~i~~~~~l~-~~~~~~~~~ll~~~~~~~~~i~~~~~ 1129 (1254)
+..+++++++.| .+++.++. ...+.+...+-.........|...+.
T Consensus 684 grvrar~ly~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 730 (766)
T COG1204 684 GRVRARKLYNAG---YKSLEDLRLIADPAELLPLTGIGERLVEAILESLG 730 (766)
T ss_pred chhHHHHHHHhh---hccHHHHHhhcChhhhhhhhhhHHHHHHHHHHHhh
Confidence 999999999999 88999988 44444443433345555555555544
No 9
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=9.3e-51 Score=465.59 Aligned_cols=307 Identities=44% Similarity=0.724 Sum_probs=285.4
Q ss_pred CCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHHHHHHHhhcCcccCCCCCCChHH
Q 000849 924 LCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHV 1003 (1254)
Q Consensus 924 ~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 1003 (1254)
+.||++|+++|+|||+++|++.|...+++.++..++|+++|.|.||+++++|++|+.++.+|.+..|++.+......++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 67899999999999999999999999999999999999999999999999999999999999999888776556778899
Q ss_pred HHHHHHHHHhcCCCCC-cchHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCH
Q 000849 1004 KANALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTK 1082 (1254)
Q Consensus 1004 K~~~Llqa~l~r~~l~-~~l~~D~~~il~~~~rl~~a~~ei~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~ 1082 (1254)
|+++||||||+|++++ .+|.+|+.+|+++++||++||+|++..+||+.++.++++|+|||+||+|++++||+|||||++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 9999999999999997 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhccCCceEEEEEEecccccccCCceEEEEEEEEec
Q 000849 1083 DLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERD 1162 (1254)
Q Consensus 1083 ~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~~l~v~l~r~ 1162 (1254)
+.+++|.++| +.++.+|.++++++++.+++++++++++|.+++++||+++|++++++.+.... +..+++++++++.
T Consensus 162 ~~~~~l~~~~---i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~-~~~~~i~~~~~~~ 237 (312)
T smart00611 162 EILKRLEKKK---VLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVL-GVEVTLTVDLTWD 237 (312)
T ss_pred HHHHHHHhCC---CCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCccccc-CceEEEEEEEEEc
Confidence 9999999999 99999999999999999999999999999999999999999999987655555 7788888888884
Q ss_pred CCCCCCcCccccCCCCCCCcccEEEEEEeCCCCeEEEEEEeeecccc---eEEEEEEeecCCCceEEEEEEEeCCccccC
Q 000849 1163 LGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKS---RAKLDFAAPVEGGKKTYTLDFMCDSYMGCD 1239 (1254)
Q Consensus 1163 ~~~~~~~~~v~~p~~p~~k~e~wwv~v~d~~~~~l~~~~~~~~~~~~---~~~~~f~~p~~~g~~~~~v~~~sD~y~G~D 1239 (1254)
+. .| .|.|+||++|||.++|+|++++++++.+.. +++++|.+|..+|.++|+|+++||+|+|+|
T Consensus 238 ~~-------~~------~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~~~~~v~v~SD~y~g~d 304 (312)
T smart00611 238 DE-------IH------GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGNYQYTLRLVSDSYLGCD 304 (312)
T ss_pred cc-------cc------CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCcceEEEEEEecccCCcc
Confidence 31 22 688999999999999999999999997544 789999999878889999999999999999
Q ss_pred eEEEEEEE
Q 000849 1240 QEYSFTVD 1247 (1254)
Q Consensus 1240 ~~~~~~~~ 1247 (1254)
++++++++
T Consensus 305 ~~~~i~~~ 312 (312)
T smart00611 305 QEYPLSFD 312 (312)
T ss_pred eEEEEeeC
Confidence 99999863
No 10
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=2.3e-50 Score=463.46 Aligned_cols=308 Identities=37% Similarity=0.626 Sum_probs=238.9
Q ss_pred cCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHHHHHHHhhcCcccCCCCCCChHHHH
Q 000849 926 PSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKA 1005 (1254)
Q Consensus 926 ~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~ 1005 (1254)
||++|+|||+|||+++|+..|...+++.++..++|++||.|.||+++++|++|+..+++|++.+|++++...+.+++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999887555788899999
Q ss_pred HHHHHHHhcCCCCC-cchHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q 000849 1006 NALLQAHFSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDL 1084 (1254)
Q Consensus 1006 ~~Llqa~l~r~~l~-~~l~~D~~~il~~~~rl~~a~~ei~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 1084 (1254)
++||||||+|+++| .+|..|+.+|+++++||++||+|+|..+||+.++.++++|+|||+||+|++.+||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHcCCCCCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhccCCceEEEEEEecccccccCCceEEEEEEEEecCC
Q 000849 1085 AKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLG 1164 (1254)
Q Consensus 1085 ~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~~l~v~l~r~~~ 1164 (1254)
+++|.++| +.++.+|.++++++++.+++.+++++++|.++++++|.++|++++.+...-. ...++++|++++.+.
T Consensus 161 ~~~l~~~~---i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~--~~~~~v~v~i~~~~~ 235 (314)
T PF02889_consen 161 LKKLEKRG---IKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEI--VPILTVQVSITRKFS 235 (314)
T ss_dssp HHHHHHTT-----SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEE--CSEEEEEEEEEESSS
T ss_pred HHHHhccC---CCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEecccccc--CCcEEEEEEEEcccc
Confidence 99999999 9999999999999999999988899999999999999999999987642110 134899999999653
Q ss_pred CCCCcCccccCCCCCCCcccEEEEEEeCCCCeEEEEEEeee-cc--cceEEEEEEeecCCCc--eEEEEEEEeCCccccC
Q 000849 1165 GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSL-QR--KSRAKLDFAAPVEGGK--KTYTLDFMCDSYMGCD 1239 (1254)
Q Consensus 1165 ~~~~~~~v~~p~~p~~k~e~wwv~v~d~~~~~l~~~~~~~~-~~--~~~~~~~f~~p~~~g~--~~~~v~~~sD~y~G~D 1239 (1254)
..++||+.|.|+||++|||.++|+|++++++++ .+ .....++|.+|..+|+ ++|+++++||+|+|+|
T Consensus 236 --------~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d 307 (314)
T PF02889_consen 236 --------WSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLD 307 (314)
T ss_dssp ---------SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--
T ss_pred --------cccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCccccc
Confidence 355999999999999999999999999999999 44 5789999999966576 9999999999999999
Q ss_pred eEEEEEE
Q 000849 1240 QEYSFTV 1246 (1254)
Q Consensus 1240 ~~~~~~~ 1246 (1254)
++++|+|
T Consensus 308 ~~~~i~~ 314 (314)
T PF02889_consen 308 QEVPINF 314 (314)
T ss_dssp EEEEEEE
T ss_pred eEEEeeC
Confidence 9999976
No 11
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.2e-49 Score=435.57 Aligned_cols=545 Identities=21% Similarity=0.254 Sum_probs=395.9
Q ss_pred chHHHHhcc--CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHH
Q 000849 410 PSYEALYQN--YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 410 ~~~~~~~~~--~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~ 487 (1254)
+.|+.++.. ++++.|+|..++..-+-..+|.+|. ++|+||||++.+++
T Consensus 203 e~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVV------------------------------SaTasGKTLIgElA 252 (830)
T COG1202 203 EKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVV------------------------------SATASGKTLIGELA 252 (830)
T ss_pred HHHHHHHHhcCcceecchhhhhhhhccccCCceEEE------------------------------eccCCCcchHHHhh
Confidence 456777665 8999999999999865445666666 99999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-------hcccCcEEEEcHhhHH
Q 000849 488 ILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-------LLEKGQIIISTPEKWD 560 (1254)
Q Consensus 488 il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~ 560 (1254)
-+..+.. .++ +.+|++|..|||+|.+++|++++++. |+++..-.|......+ .-..+||||+|+|-+|
T Consensus 253 Gi~~~l~--~g~--KmlfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD 327 (830)
T COG1202 253 GIPRLLS--GGK--KMLFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGID 327 (830)
T ss_pred CcHHHHh--CCC--eEEEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHH
Confidence 8877765 355 89999999999999999999999875 8888877775443221 2235699999999999
Q ss_pred HHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeE
Q 000849 561 ALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVF 639 (1254)
Q Consensus 561 ~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~ 639 (1254)
.++|.. ..+.+++.+||||+|.+.+ +||+.++-++.|++++. +..|+|++|||+.|++++++.||...
T Consensus 328 ~lLRtg---~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~----~~AQ~i~LSATVgNp~elA~~l~a~l---- 396 (830)
T COG1202 328 YLLRTG---KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF----PGAQFIYLSATVGNPEELAKKLGAKL---- 396 (830)
T ss_pred HHHHcC---CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC----CCCeEEEEEeecCChHHHHHHhCCee----
Confidence 999974 5699999999999999999 89999999999999884 58999999999999999999999875
Q ss_pred ecCCCCcccccEEEEeecc-CCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccc
Q 000849 640 NFPPGVRPVPLEIQIQGVD-ITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718 (1254)
Q Consensus 640 ~~~~~~r~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~ 718 (1254)
..-+.||||++.|+.-.. ..........+.+.-|...... .-.+++|||++||+.|..+|..|...
T Consensus 397 -V~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~ssk-g~rGQtIVFT~SRrr~h~lA~~L~~k----------- 463 (830)
T COG1202 397 -VLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSK-GYRGQTIVFTYSRRRCHELADALTGK----------- 463 (830)
T ss_pred -EeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhcc-CcCCceEEEecchhhHHHHHHHhhcC-----------
Confidence 233679999998876443 3333333334444444443333 45689999999999999999877321
Q ss_pred cccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcceee------cc
Q 000849 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA------TG 792 (1254)
Q Consensus 719 ~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~~~V------~~ 792 (1254)
+..+.++|+||+..+|+.++..|.++++.++|+|.+++.|||+|+..| .|
T Consensus 464 ------------------------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG 519 (830)
T COG1202 464 ------------------------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMG 519 (830)
T ss_pred ------------------------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcc
Confidence 557889999999999999999999999999999999999999997666 67
Q ss_pred cccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc----------HHHHHHhhc-CCcccccccc-hhHHHHHHHHHhhC
Q 000849 793 RKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH----------KEYYKKFLY-EAFPVESHLH-HFLHDNFNAEIVAG 860 (1254)
Q Consensus 793 ~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~----------~~~~~~~l~-~~~pies~l~-~~l~~~l~~ei~~~ 860 (1254)
....|+.+|.||.|||||+++.+.|++|+++.+.. .+..-++++ ++.|+.-... +.-.+.+++ ..+
T Consensus 520 ~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~ 597 (830)
T COG1202 520 IEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAG 597 (830)
T ss_pred cccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--Hhh
Confidence 77899999999999999999999999999987653 222334554 6667655542 222333333 344
Q ss_pred ccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCCCCCcCchhHHHHhhcCCh
Q 000849 861 VIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISY 940 (1254)
Q Consensus 861 ~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~ 940 (1254)
...+.++.-+ -|+.+.|... -.+.++..|++.|||..++ +.+.||+.|+++|.+.+.|
T Consensus 598 v~~s~~~i~~---------v~~~~~g~~~------------~~~k~l~~Lee~g~i~~~G-~~v~~T~yGrava~~Fl~p 655 (830)
T COG1202 598 VTNSLSVIER---------VNSLMLGAAF------------DPKKALSKLEEYGMIKKKG-NIVRPTPYGRAVAMSFLGP 655 (830)
T ss_pred hcCcHHHHhh---------cChhhccccC------------CHHHHHHHHHhcCCeeccC-CEeeeccccceeEEeecCc
Confidence 4444443222 1223322211 1467889999999998653 3599999999999999999
Q ss_pred hhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHHHHHHH-hhcCcccCC----------CCCC--Ch--HHHH
Q 000849 941 KTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLI-NHQRFSFAN----------PKCT--DP--HVKA 1005 (1254)
Q Consensus 941 ~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~-~~~~~~~~~----------~~~~--~~--~~K~ 1005 (1254)
.++..+...+-..+ +.+.+++.-.-|....+...=...+.... .++|..+-. .++. +| ..|.
T Consensus 656 ~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l 732 (830)
T COG1202 656 SEAEFIREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKL 732 (830)
T ss_pred hHHHHHHHhhhccC---ChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHH
Confidence 99999998754444 33445555555655554433322222221 122221100 0010 22 3455
Q ss_pred HHHHHHHhcC------------------------C---CCC---------cchHHhHHHHHHHHHHHHHHHHHHHHhcCc
Q 000849 1006 NALLQAHFSA------------------------R---HME---------GNLKLDQEKVLLSASRLLQAMVDVISSNGW 1049 (1254)
Q Consensus 1006 ~~Llqa~l~r------------------------~---~l~---------~~l~~D~~~il~~~~rl~~a~~ei~~~~~~ 1049 (1254)
+.+.+..++. . .++ ..|.+|..+-+++..|++.|.-.||...+-
T Consensus 733 ~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~k 812 (830)
T COG1202 733 LLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKK 812 (830)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666666553 0 011 134789999999999999999999876655
Q ss_pred HHHHHHHHHHHHHHH
Q 000849 1050 LSLALLAMEVSQMVT 1064 (1254)
Q Consensus 1050 ~~~~~~~~~l~q~i~ 1064 (1254)
-..+..+..+.+-+.
T Consensus 813 r~~~~ea~~lk~~ie 827 (830)
T COG1202 813 REVEAEAKALKKKIE 827 (830)
T ss_pred HHHHHHHHHHHHHhh
Confidence 554455566555444
No 12
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-42 Score=408.67 Aligned_cols=640 Identities=20% Similarity=0.265 Sum_probs=448.1
Q ss_pred CCCcChHHHHHHHH--HhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhc
Q 000849 419 YKLFNPIQTQVFAV--LYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRAS 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~--~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~ 496 (1254)
...+..+|.+|+.. ++ +..|.+.+ +||+.|||+++++-|++.....
T Consensus 221 i~~~fewq~ecls~~~~~-e~~nliys------------------------------~Pts~gktlvaeilml~~~l~~- 268 (1008)
T KOG0950|consen 221 ILKLFEWQAECLSLPRLL-ERKNLIYS------------------------------LPTSAGKTLVAEILMLREVLCR- 268 (1008)
T ss_pred HHHHHHHHHHHhcchhhh-cccceEEe------------------------------CCCccchHHHHHHHHHHHHHHH-
Confidence 45667899999844 55 56788888 9999999999999999877652
Q ss_pred CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceee
Q 000849 497 ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 576 (1254)
Q Consensus 497 ~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~ 576 (1254)
.+ .++.+.|..+.+.+....+.....+ +|+.|....|...+. ...+.-.+.|||.|+-..+.........+..++
T Consensus 269 -rr--~~llilp~vsiv~Ek~~~l~~~~~~-~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g 343 (1008)
T KOG0950|consen 269 -RR--NVLLILPYVSIVQEKISALSPFSID-LGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLG 343 (1008)
T ss_pred -hh--ceeEecceeehhHHHHhhhhhhccc-cCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccC
Confidence 33 7899999999999998888875544 599998888766544 334566999999999888777776666788999
Q ss_pred EEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEe
Q 000849 577 LFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQ 655 (1254)
Q Consensus 577 liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~ 655 (1254)
+|||||.|++++ .||..+|.+++.+.+.... ...|+||||||++|..+++.||... .+...+||+|+..++.
T Consensus 344 ~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~--~~~~iIGMSATi~N~~lL~~~L~A~-----~y~t~fRPv~L~E~ik 416 (1008)
T KOG0950|consen 344 MVVVDELHMIGDKGRGAILELLLAKILYENLE--TSVQIIGMSATIPNNSLLQDWLDAF-----VYTTRFRPVPLKEYIK 416 (1008)
T ss_pred cEEEeeeeeeeccccchHHHHHHHHHHHhccc--cceeEeeeecccCChHHHHHHhhhh-----heecccCcccchhccC
Confidence 999999999999 8999999999999877643 3488999999999999999999864 3677899999987765
Q ss_pred eccCCChHHHHHhh---C----------H--HHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccc
Q 000849 656 GVDITNFEARMKAM---T----------K--PTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLL 720 (1254)
Q Consensus 656 ~~~~~~~~~~~~~~---~----------~--~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~ 720 (1254)
.........+.... . . .......+.+.++.++||||++++.|+.+|..+............ +..
T Consensus 417 ~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~-~~~ 495 (1008)
T KOG0950|consen 417 PGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEK-RLG 495 (1008)
T ss_pred CCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhh-hhh
Confidence 43322211111110 0 0 112222344466778999999999999999877765544322111 111
Q ss_pred -cCh---hchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcceee------
Q 000849 721 -CSA---KEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA------ 790 (1254)
Q Consensus 721 -~~~---~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~~~V------ 790 (1254)
... ..........-|.-+++++.+|+++||+|++.++|+.|+..|++|.+.|++||+++++|+|+|++-|
T Consensus 496 ~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~ 575 (1008)
T KOG0950|consen 496 LWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY 575 (1008)
T ss_pred HHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc
Confidence 000 0111111223467789999999999999999999999999999999999999999999999997666
Q ss_pred cccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCCc-ccccccchh----HHHHHHHHHhhCccCCH
Q 000849 791 TGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAF-PVESHLHHF----LHDNFNAEIVAGVIENK 865 (1254)
Q Consensus 791 ~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~-pies~l~~~----l~~~l~~ei~~~~i~~~ 865 (1254)
-|....+..+|.||+|||||.|.|+.|.+++++.+.++..+..++..+. |..|++... ....+...|+.+...+.
T Consensus 576 ~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~ 655 (1008)
T KOG0950|consen 576 VGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETA 655 (1008)
T ss_pred cccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhH
Confidence 4445578899999999999999999999999999999888888888665 466777322 22345677888888999
Q ss_pred HHHHHHHHHhc-ccccCCCcccCCC--CCcc-cHHHHHHHHHHHHHHHhHHCCCce-ec-CCCCCCcCchhHHHHhhcCC
Q 000849 866 QDAVDYLTWTF-RLTQNPNYYNLQG--VSHR-HLSDHLSELVENTISDLEATRSII-ME-DDMDLCPSNYGMIASYYYIS 939 (1254)
Q Consensus 866 ~d~~~~l~~tf-r~~~nP~~y~~~~--~~~~-~~~~~l~~~i~~~l~~L~~~g~i~-~~-~~~~~~~t~lG~i~s~~~i~ 939 (1254)
+|...+...|+ -...-|..-...- .+.. .+.++.+ ..+.+..+|. .. ++....+|++|+..=.-.++
T Consensus 656 ~di~~~va~tl~s~q~~~~~~~~~le~~s~ql~~~~~~~-------d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~ 728 (1008)
T KOG0950|consen 656 EDILHFVAVTLLSAQEKPENVREQLEMESDQLVINDFKS-------DQLLEKDFIYKKQIENLRENITRLGRACFNAGSD 728 (1008)
T ss_pred HHHHHHHHHhhhhcccchhhhhhcccchhhhhccchhhH-------HHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCC
Confidence 99999999998 3333332211110 0000 0111111 1111111121 00 01123389999988888889
Q ss_pred hhhHHHHHhcccCcCc------HHHHHHHHhCccc-------------cccCCCChhhHHHHHHHH--hhcCcc-cC---
Q 000849 940 YKTIECFSSSLTSKTK------MKGLLEVLASASE-------------YAQLPIRPGEEELVRRLI--NHQRFS-FA--- 994 (1254)
Q Consensus 940 ~~T~~~~~~~l~~~~~------~~~ll~ils~s~E-------------f~~l~~R~~e~~~l~~l~--~~~~~~-~~--- 994 (1254)
|.-+..++..+...+. ..+++.+..--.| |..+ ...++...+.+- +.+-+. ..
T Consensus 729 ~~~a~~l~~~L~~~~~~~vle~~lh~lylvtP~~~~~~~~dwli~f~i~~~L--~~~~~~~~~~~G~~e~fi~~~~~gqs 806 (1008)
T KOG0950|consen 729 PEVANILFADLKKSLPQLVLESSLHLLYLVTPYLEVMNDIDWLIYFQIYHTL--PSPEQKLAKLLGVIESFIEKCVSGQS 806 (1008)
T ss_pred hhhhHHHHHHHHHhhhccccccccceeeeecchHhhcccccHHHHHHHHhcC--CcHHHHHHhhhchHHHHHHHhhhccc
Confidence 8888777765543321 0111111100000 0011 111111111110 000000 00
Q ss_pred CCCCCC-h---HHHHHHHHHHHhcCCCCC---cc---hHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 000849 995 NPKCTD-P---HVKANALLQAHFSARHME---GN---LKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVT 1064 (1254)
Q Consensus 995 ~~~~~~-~---~~K~~~Llqa~l~r~~l~---~~---l~~D~~~il~~~~rl~~a~~ei~~~~~~~~~~~~~~~l~q~i~ 1064 (1254)
..+... + ..-+.+.+|..++..++. .. .++=++..++++.....+..-+|.+.+|......+-++.+++.
T Consensus 807 ~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~ 886 (1008)
T KOG0950|consen 807 VRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLS 886 (1008)
T ss_pred cccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence 001111 1 123567789999998886 23 3777889999999999999999999999876677788999999
Q ss_pred hccCCCCCccccCCCCCHHHHHHHHcCCCCCccCHHHHhcCCHHHHHHHhc
Q 000849 1065 QGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQ 1115 (1254)
Q Consensus 1065 q~~w~~~~~L~Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~ 1115 (1254)
.|...+..||+.+|++...+++.|+.+| ++|+.++++.++.+..+-+.
T Consensus 887 ~g~~~eL~~Lmrv~~~~~~RAr~lf~Ag---f~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 887 FGGHAELIPLMRVPDVKAERARQLFKAG---FTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred ccchhhhhhhhcCchhHHHHHHHHHHhh---ccchHHHhcCChHHHHHHhh
Confidence 9999999999999999999999999999 99999999999888765553
No 13
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-43 Score=375.51 Aligned_cols=341 Identities=20% Similarity=0.204 Sum_probs=258.5
Q ss_pred CCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccC
Q 000849 397 LDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPT 476 (1254)
Q Consensus 397 l~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apT 476 (1254)
++++|..+.+++..+ ++.|+++|++++|.++.+++ +|+.|.|
T Consensus 66 Lgv~~~L~~ac~~l~-------~~~PT~IQ~~aiP~~L~g~d-------------------------------vIglAeT 107 (476)
T KOG0330|consen 66 LGVHPELLEACQELG-------WKKPTKIQSEAIPVALGGRD-------------------------------VIGLAET 107 (476)
T ss_pred cCcCHHHHHHHHHhC-------cCCCchhhhhhcchhhCCCc-------------------------------EEEEecc
Confidence 455555555554433 89999999999999998877 5555999
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh---hcccCcEEE
Q 000849 477 GSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---LLEKGQIII 553 (1254)
Q Consensus 477 GsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~Iiv 553 (1254)
|||||.+|.+||++.+.+. ...+.++|++|||+||.|+.+.+.. ++...|+++..+.|+.+.... ..++++|+|
T Consensus 108 GSGKT~afaLPIl~~LL~~--p~~~~~lVLtPtRELA~QI~e~fe~-Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilV 184 (476)
T KOG0330|consen 108 GSGKTGAFALPILQRLLQE--PKLFFALVLTPTRELAQQIAEQFEA-LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILV 184 (476)
T ss_pred CCCchhhhHHHHHHHHHcC--CCCceEEEecCcHHHHHHHHHHHHH-hccccCeEEEEEecCchHHHHHHHhhcCCCEEE
Confidence 9999999999999999983 3347999999999999999999986 766679999999999876533 346789999
Q ss_pred EcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhc
Q 000849 554 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG 632 (1254)
Q Consensus 554 ~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~ 632 (1254)
+|||+|..++.+.. ...+..++++|+||||++.+ +++..++.++.. .+...|.+++|||++.. +.+...
T Consensus 185 aTPGrL~dhl~~Tk-gf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~-------ip~erqt~LfsATMt~k--v~kL~r 254 (476)
T KOG0330|consen 185 ATPGRLWDHLENTK-GFSLEQLKFLVLDEADRLLDMDFEEELDYILKV-------IPRERQTFLFSATMTKK--VRKLQR 254 (476)
T ss_pred eCcHHHHHHHHhcc-CccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh-------cCccceEEEEEeecchh--hHHHHh
Confidence 99999977776533 23588999999999999997 565555554444 36789999999999743 222222
Q ss_pred CCCC--eeEecCCCCcccc-cEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhh
Q 000849 633 ASSH--GVFNFPPGVRPVP-LEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSC 709 (1254)
Q Consensus 633 ~~~~--~~~~~~~~~r~v~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~ 709 (1254)
.... .....+..++.++ +.+.+..++...... ..-.+.+. ..+.++||||++...+..++-.|..
T Consensus 255 asl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~--------yLV~ll~e-~~g~s~iVF~~t~~tt~~la~~L~~--- 322 (476)
T KOG0330|consen 255 ASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT--------YLVYLLNE-LAGNSVIVFCNTCNTTRFLALLLRN--- 322 (476)
T ss_pred hccCCCeEEeccchhcchHHhhhheEeccccccch--------hHHHHHHh-hcCCcEEEEEeccchHHHHHHHHHh---
Confidence 2211 1111222222221 111111122221111 11223333 5679999999999999998866532
Q ss_pred ccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-c-
Q 000849 710 KDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-A- 787 (1254)
Q Consensus 710 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~- 787 (1254)
+++....+||.|++..|.-.++.|++|...|||||+++++|+|+| +
T Consensus 323 --------------------------------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 323 --------------------------------LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred --------------------------------cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 366788899999999999999999999999999999999999999 4
Q ss_pred eeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHh
Q 000849 788 HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 788 ~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
.||+|+.|.+..+|+||+||+||.|. +|.++.+++.-+.+.|+++
T Consensus 371 ~VVNyDiP~~skDYIHRvGRtaRaGr--sG~~ItlVtqyDve~~qrI 415 (476)
T KOG0330|consen 371 VVVNYDIPTHSKDYIHRVGRTARAGR--SGKAITLVTQYDVELVQRI 415 (476)
T ss_pred EEEecCCCCcHHHHHHHcccccccCC--CcceEEEEehhhhHHHHHH
Confidence 55599999999999999999999995 9999999998888887764
No 14
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.1e-42 Score=428.46 Aligned_cols=342 Identities=16% Similarity=0.180 Sum_probs=256.5
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|+.|+++|.++++.+++++ |++++ ||||||||++|.+|+++.+.. .++
T Consensus 34 ~~~p~~~Q~~ai~~il~G~-nvvv~------------------------------apTGSGKTla~~LPiL~~l~~-~~~ 81 (742)
T TIGR03817 34 IHRPWQHQARAAELAHAGR-HVVVA------------------------------TGTASGKSLAYQLPVLSALAD-DPR 81 (742)
T ss_pred CCcCCHHHHHHHHHHHCCC-CEEEE------------------------------CCCCCcHHHHHHHHHHHHHhh-CCC
Confidence 8899999999999998874 46666 999999999999999999876 333
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--hcccCcEEEEcHhhHHH-HHHh-hhcccccce
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK--LLEKGQIIISTPEKWDA-LSRR-WKQRKYVQQ 574 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~Iiv~Tpe~l~~-l~~~-~~~~~~l~~ 574 (1254)
.++||++|||||+.|+++.+++. + ..++++..++|+...+.+ ...+++|+|+||+++.. ++.. ......+++
T Consensus 82 --~~aL~l~PtraLa~q~~~~l~~l-~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~ 157 (742)
T TIGR03817 82 --ATALYLAPTKALAADQLRAVREL-T-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRR 157 (742)
T ss_pred --cEEEEEcChHHHHHHHHHHHHHh-c-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhc
Confidence 49999999999999999999874 4 347889999999875543 23467999999999843 2221 111234889
Q ss_pred eeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCccccc-EEE
Q 000849 575 VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPL-EIQ 653 (1254)
Q Consensus 575 v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l-~~~ 653 (1254)
+++|||||+|.+.+.+|..+..++.+++.+....+.+.|+|++|||++|..++++++...+..+ ...+..|... ...
T Consensus 158 l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~--i~~~~~~~~~~~~~ 235 (742)
T TIGR03817 158 LRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVA--VTEDGSPRGARTVA 235 (742)
T ss_pred CCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEE--ECCCCCCcCceEEE
Confidence 9999999999998778999999999999998877888999999999999988887765444222 2222222221 111
Q ss_pred EeeccCCChHH----H-HHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhh
Q 000849 654 IQGVDITNFEA----R-MKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728 (1254)
Q Consensus 654 ~~~~~~~~~~~----~-~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~ 728 (1254)
+.......... . ...........+...+..+.++||||+|++.|+.++..+........
T Consensus 236 ~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~---------------- 299 (742)
T TIGR03817 236 LWEPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVD---------------- 299 (742)
T ss_pred EecCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc----------------
Confidence 11000000000 0 00000111222333335678999999999999999988765432110
Q ss_pred HHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhc
Q 000849 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMG 806 (1254)
Q Consensus 729 ~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~G 806 (1254)
..++.++..|||++++++|..++++|++|++++||||+++++|||+| ..+|+++.|.+..+|+||+|
T Consensus 300 -----------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiG 368 (742)
T TIGR03817 300 -----------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAG 368 (742)
T ss_pred -----------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhcc
Confidence 01245688999999999999999999999999999999999999999 56679999999999999999
Q ss_pred ccCCCCCCCCceEEEEccCCc
Q 000849 807 HAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 807 RaGR~g~d~~G~~iil~~~~~ 827 (1254)
||||.|. .|.+++++.++.
T Consensus 369 RaGR~G~--~g~ai~v~~~~~ 387 (742)
T TIGR03817 369 RAGRRGQ--GALVVLVARDDP 387 (742)
T ss_pred ccCCCCC--CcEEEEEeCCCh
Confidence 9999987 799999887543
No 15
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.9e-42 Score=435.55 Aligned_cols=402 Identities=21% Similarity=0.286 Sum_probs=287.7
Q ss_pred CchHHHHhcc-CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHH
Q 000849 409 NPSYEALYQN-YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 409 ~~~~~~~~~~-~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~ 487 (1254)
.+.++++|.. |..|+|+|+++++.++++ +|++++ ||||||||++|.+|
T Consensus 19 ~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g-~nvli~------------------------------APTGSGKTlaa~Lp 67 (876)
T PRK13767 19 RPYVREWFKEKFGTFTPPQRYAIPLIHEG-KNVLIS------------------------------SPTGSGKTLAAFLA 67 (876)
T ss_pred CHHHHHHHHHccCCCCHHHHHHHHHHHcC-CCEEEE------------------------------CCCCCcHHHHHHHH
Confidence 3566777765 889999999999998876 457777 99999999999999
Q ss_pred HHHHHHhhcC----CCCcEEEEEcchHHHHHHHHHHHHHhh----------cccc-CcEEEEeccccccchh--hc-ccC
Q 000849 488 ILRNHQRASE----TGVMRAVYIAPIEALAKQRYCDWERKF----------GKEL-GMCVVELTVETAMDLK--LL-EKG 549 (1254)
Q Consensus 488 il~~l~~~~~----~~~~~vl~i~P~r~La~q~~~~~~~~~----------~~~~-~~~v~~~~g~~~~~~~--~~-~~~ 549 (1254)
+++.+..... .++++++|++|+|+|+.|+++++.+.+ +... ++++...+||+....+ .+ ..+
T Consensus 68 il~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p 147 (876)
T PRK13767 68 IIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPP 147 (876)
T ss_pred HHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCC
Confidence 9988865211 224689999999999999998765322 1222 6789999999875543 22 356
Q ss_pred cEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHH
Q 000849 550 QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLG 628 (1254)
Q Consensus 550 ~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~ 628 (1254)
+|+|||||+|..++........+.++++|||||+|.+.+ .||..++..+.++..+. +.+.|+|++|||++|.++++
T Consensus 148 ~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va 224 (876)
T PRK13767 148 HILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVA 224 (876)
T ss_pred CEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHH
Confidence 999999999987776544344688999999999999996 79999999999998774 45789999999999999999
Q ss_pred HhhcCCC------CeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHH
Q 000849 629 EWIGASS------HGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAV 702 (1254)
Q Consensus 629 ~~l~~~~------~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~ 702 (1254)
.|++... ...+......++..+............ ....+....+..+.+.+..++++||||||++.|+.++.
T Consensus 225 ~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~--~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~ 302 (876)
T PRK13767 225 KFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHT--PAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLY 302 (876)
T ss_pred HHhcCccccCCCCceEEEccCCCccceEEEeccCcccccc--ccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHH
Confidence 9997631 111111112222222221110000000 00112233445555555678899999999999999998
Q ss_pred HHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccc
Q 000849 703 DLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782 (1254)
Q Consensus 703 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~G 782 (1254)
.|....... ..+.++.+|||+|++++|..+++.|++|.++|||||+++++|
T Consensus 303 ~L~~~~~~~-----------------------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~G 353 (876)
T PRK13767 303 NLRKRFPEE-----------------------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELG 353 (876)
T ss_pred HHHHhchhh-----------------------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhc
Confidence 886532210 114579999999999999999999999999999999999999
Q ss_pred cCCc--ceeecccccCCHHHHHHhhcccCCCCCC-CCceEEEEccCCcHH---HHHHhhc-CCccc--ccccchhHHHHH
Q 000849 783 VPLT--AHLATGRKMLILTTLLQMMGHAGRPLLD-NSEKCVILCHAPHKE---YYKKFLY-EAFPV--ESHLHHFLHDNF 853 (1254)
Q Consensus 783 vdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d-~~G~~iil~~~~~~~---~~~~~l~-~~~pi--es~l~~~l~~~l 853 (1254)
||+| ..+|+++.|.+..+|+||+|||||.+.+ ..|.++.....+-.+ ..+.... ...|+ ...-...+..++
T Consensus 354 IDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i 433 (876)
T PRK13767 354 IDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHI 433 (876)
T ss_pred CCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHH
Confidence 9999 4556889999999999999999997532 345555432221111 1122222 11222 222245677788
Q ss_pred HHHHhhCccCCHHHHHHHHHHhc
Q 000849 854 NAEIVAGVIENKQDAVDYLTWTF 876 (1254)
Q Consensus 854 ~~ei~~~~i~~~~d~~~~l~~tf 876 (1254)
.+.++.+ .-+.+++.++++.||
T Consensus 434 ~~~~~~~-~~~~~~~~~~~~~~~ 455 (876)
T PRK13767 434 VGMAIER-PWDIEEAYNIVRRAY 455 (876)
T ss_pred HHHHHcC-CCCHHHHHHHHhccC
Confidence 8866664 668999999999888
No 16
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2e-41 Score=409.14 Aligned_cols=420 Identities=20% Similarity=0.261 Sum_probs=315.4
Q ss_pred CchHHHHhcc-CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHH
Q 000849 409 NPSYEALYQN-YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 409 ~~~~~~~~~~-~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.++++|.. |..|||.|.+|++.+..| .|+|+. ||||||||+++.+|
T Consensus 9 ~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G-~nvLii------------------------------APTGsGKTeAAfLp 57 (814)
T COG1201 9 DPRVREWFKRKFTSLTPPQRYAIPEIHSG-ENVLII------------------------------APTGSGKTEAAFLP 57 (814)
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHhCC-CceEEE------------------------------cCCCCChHHHHHHH
Confidence 3567777776 999999999999999876 557766 99999999999999
Q ss_pred HHHHHHhhc---CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh--c-ccCcEEEEcHhhHHH
Q 000849 488 ILRNHQRAS---ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL--L-EKGQIIISTPEKWDA 561 (1254)
Q Consensus 488 il~~l~~~~---~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~-~~~~Iiv~Tpe~l~~ 561 (1254)
++..+.... +.++..+|||+|.|||.+++..++..... .+|+.+...+||+....+. . +-+||+++|||.|..
T Consensus 58 il~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~-~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~l 136 (814)
T COG1201 58 VINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLR-ELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAI 136 (814)
T ss_pred HHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH-HcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHH
Confidence 999988842 23357999999999999999999987555 4699999999999865432 2 345999999999987
Q ss_pred HHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCC-CeeE
Q 000849 562 LSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASS-HGVF 639 (1254)
Q Consensus 562 l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~-~~~~ 639 (1254)
++.....+..+.++.++||||+|.+.+ +||.++...+.|++.+. .+.|.||+|||+.+.+++++||+... ...+
T Consensus 137 ll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~----~~~qRIGLSATV~~~~~varfL~g~~~~~~I 212 (814)
T COG1201 137 LLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA----GDFQRIGLSATVGPPEEVAKFLVGFGDPCEI 212 (814)
T ss_pred HhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC----cccEEEeehhccCCHHHHHHHhcCCCCceEE
Confidence 777656667899999999999999987 89999999999999884 28999999999999999999998875 2222
Q ss_pred ecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCccccccc
Q 000849 640 NFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719 (1254)
Q Consensus 640 ~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~ 719 (1254)
.-....++..+.+.......... .......+..+.+.+...+.+|||+|||..++.++..|....
T Consensus 213 v~~~~~k~~~i~v~~p~~~~~~~----~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~----------- 277 (814)
T COG1201 213 VDVSAAKKLEIKVISPVEDLIYD----EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLG----------- 277 (814)
T ss_pred EEcccCCcceEEEEecCCccccc----cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhc-----------
Confidence 22333444444443332222111 112233445555555677899999999999999998875431
Q ss_pred ccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCC
Q 000849 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLI 797 (1254)
Q Consensus 720 ~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s 797 (1254)
...+..|||+++.+.|..++++|++|+++++|||++++-|||+. ..||++..|.+
T Consensus 278 -----------------------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~s 334 (814)
T COG1201 278 -----------------------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKS 334 (814)
T ss_pred -----------------------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHH
Confidence 24699999999999999999999999999999999999999999 45559999999
Q ss_pred HHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHH------HhhcC---CcccccccchhHHHHHHHHHhhCccCCHHHH
Q 000849 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK------KFLYE---AFPVESHLHHFLHDNFNAEIVAGVIENKQDA 868 (1254)
Q Consensus 798 ~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~------~~l~~---~~pies~l~~~l~~~l~~ei~~~~i~~~~d~ 868 (1254)
++.++||+||+|+.- +...++++++.. ..+.++ ..... ..++...=...+..++....... --+..++
T Consensus 335 V~r~lQRiGRsgHr~-~~~Skg~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~ 411 (814)
T COG1201 335 VNRFLQRIGRAGHRL-GEVSKGIIIAED-RDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEA 411 (814)
T ss_pred HHHHhHhcccccccc-CCcccEEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHH
Confidence 999999999999865 346777877766 333332 22221 22222222345556666666556 6678888
Q ss_pred HHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHH--CCCceecCCC
Q 000849 869 VDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA--TRSIIMEDDM 922 (1254)
Q Consensus 869 ~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~--~g~i~~~~~~ 922 (1254)
.+.++.+|- |=+++ .+.+++.++.|.. .+.+....+.
T Consensus 412 y~~vrrayp------y~~L~-----------~e~f~~v~~~l~~~~~~~~~i~~~~ 450 (814)
T COG1201 412 YRVVRRAYP------YADLS-----------REDFRLVLRYLAGEKNVYAKIWLDE 450 (814)
T ss_pred HHHHHhccc------cccCC-----------HHHHHHHHHHHhhcccceeEEeecC
Confidence 888877771 11111 2456777888887 6666655443
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-42 Score=390.97 Aligned_cols=330 Identities=16% Similarity=0.197 Sum_probs=245.9
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh---
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA--- 495 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~--- 495 (1254)
|..|+|||.+++|.++.|++ ++++|.||||||++|++|++.++...
T Consensus 111 ~~~PtpIQaq~wp~~l~GrD-------------------------------~v~iA~TGSGKTLay~lP~i~~l~~~~~~ 159 (519)
T KOG0331|consen 111 FEKPTPIQAQGWPIALSGRD-------------------------------LVGIARTGSGKTLAYLLPAIVHLNNEQGK 159 (519)
T ss_pred CCCCchhhhcccceeccCCc-------------------------------eEEEeccCCcchhhhhhHHHHHHHhcccc
Confidence 99999999999999999977 55569999999999999999998862
Q ss_pred -cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccc--hhhccc-CcEEEEcHhhHHHHHHhhhcccc
Q 000849 496 -SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKY 571 (1254)
Q Consensus 496 -~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~-~~Iiv~Tpe~l~~l~~~~~~~~~ 571 (1254)
..+++|++|+++|||+||.|+.+.+.+ ++..++++..+++|+.... .+.+++ .+|+|+||+++.+++... ...
T Consensus 160 ~~~~~~P~vLVL~PTRELA~QV~~~~~~-~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g--~~~ 236 (519)
T KOG0331|consen 160 LSRGDGPIVLVLAPTRELAVQVQAEARE-FGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG--SLN 236 (519)
T ss_pred ccCCCCCeEEEEcCcHHHHHHHHHHHHH-HcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC--Ccc
Confidence 234467999999999999999999987 6555678888899987754 334444 699999999998888773 445
Q ss_pred cceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-hHHHH-HhhcCCCCeeEecCC-C-Cc
Q 000849 572 VQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN-AKDLG-EWIGASSHGVFNFPP-G-VR 646 (1254)
Q Consensus 572 l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~-~~~l~-~~l~~~~~~~~~~~~-~-~r 646 (1254)
++++.++|+||||+|.+ .+.+.++.++.++. +...|+++.|||.|. ...++ +|++ .+..+..... . ..
T Consensus 237 l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~------~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a 309 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMGFEPQIRKILSQIP------RPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKA 309 (519)
T ss_pred ccceeEEEeccHHhhhccccHHHHHHHHHhcC------CCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhh
Confidence 89999999999999997 44444444444331 344579999999984 35554 4555 3322211100 0 00
Q ss_pred ccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhch
Q 000849 647 PVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV 726 (1254)
Q Consensus 647 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l 726 (1254)
...+...+...+ ......+...+...+. -..++++||||+|++.|+.++..+...
T Consensus 310 ~~~i~qive~~~----~~~K~~~l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~------------------- 364 (519)
T KOG0331|consen 310 NHNIRQIVEVCD----ETAKLRKLGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRK------------------- 364 (519)
T ss_pred hcchhhhhhhcC----HHHHHHHHHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhc-------------------
Confidence 111111111111 1111111122222222 146779999999999999999877431
Q ss_pred hhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHh
Q 000849 727 EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQM 804 (1254)
Q Consensus 727 ~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr 804 (1254)
++++..+||+.++.+|..+++.|++|+..|||||+++++|+|+| .+||+++.|.+.++|+||
T Consensus 365 ----------------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHR 428 (519)
T KOG0331|consen 365 ----------------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHR 428 (519)
T ss_pred ----------------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhh
Confidence 35688999999999999999999999999999999999999999 566699999999999999
Q ss_pred hcccCCCCCCCCceEEEEccCCcHHHHH
Q 000849 805 MGHAGRPLLDNSEKCVILCHAPHKEYYK 832 (1254)
Q Consensus 805 ~GRaGR~g~d~~G~~iil~~~~~~~~~~ 832 (1254)
+||+||.|. .|.++.|.+..+.....
T Consensus 429 iGRTGRa~~--~G~A~tfft~~~~~~a~ 454 (519)
T KOG0331|consen 429 IGRTGRAGK--KGTAITFFTSDNAKLAR 454 (519)
T ss_pred cCccccCCC--CceEEEEEeHHHHHHHH
Confidence 999999886 89999999877654443
No 18
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.1e-40 Score=419.69 Aligned_cols=392 Identities=19% Similarity=0.265 Sum_probs=268.6
Q ss_pred eeccCCCchHHHHHHHHHHHHHhhc--------CCCCcEEEEEcchHHHHHHHHHHHHHhhc----------c-ccCcEE
Q 000849 472 QLAPTGSGKTICAEFAILRNHQRAS--------ETGVMRAVYIAPIEALAKQRYCDWERKFG----------K-ELGMCV 532 (1254)
Q Consensus 472 v~apTGsGKT~~~~l~il~~l~~~~--------~~~~~~vl~i~P~r~La~q~~~~~~~~~~----------~-~~~~~v 532 (1254)
|+||||||||++|.+|++..+.... ..++.++|||+|+|+|+.|++++++..+. . ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 3599999999999999998887531 11246999999999999999999875221 1 247899
Q ss_pred EEeccccccchh--hc-ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhc
Q 000849 533 VELTVETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQV 608 (1254)
Q Consensus 533 ~~~~g~~~~~~~--~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~ 608 (1254)
...+||++.+.+ .+ +.++|+|+|||+|..++.+. ....++++++|||||+|.+.+ +||.+++..+.|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 999999987653 23 35799999999998876542 245789999999999999997 69999999999998874
Q ss_pred CCCcEEEEecCCCCChHHHHHhhcCCC-CeeEecCCCCcccccEEEEeeccCCChH------------HHHHhhCHHHHH
Q 000849 609 ENKIRIVALSTSLANAKDLGEWIGASS-HGVFNFPPGVRPVPLEIQIQGVDITNFE------------ARMKAMTKPTYT 675 (1254)
Q Consensus 609 ~~~~rii~lSATl~~~~~l~~~l~~~~-~~~~~~~~~~r~v~l~~~~~~~~~~~~~------------~~~~~~~~~~~~ 675 (1254)
+.+.|+|++|||++|.+++++||+... ..++. .+..++.++.+.+...+..... .+...+......
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 567899999999999999999998753 33433 5556666665443322111100 001111122223
Q ss_pred HHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHh---hccceeecCC
Q 000849 676 AIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATL---RLGVGYLHEG 752 (1254)
Q Consensus 676 ~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l---~~~v~~~h~~ 752 (1254)
.+...+..++++|||||||+.|+.++..|.+.......... .............+....... ...+..|||+
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSP-----SIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccc-----cccchhhhhhhccccchhccccccceeeeecccc
Confidence 34444456789999999999999999999764321100000 000000000000111111111 1336789999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHH
Q 000849 753 LNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830 (1254)
Q Consensus 753 l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~ 830 (1254)
|++++|..+++.|++|++++||||+++++|||++ ..||+++.|.++.+|+||+|||||.. +..+.++++..+ ..+.
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~-gg~s~gli~p~~-r~dl 388 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV-GGVSKGLFFPRT-RRDL 388 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC-CCccEEEEEeCc-HHHH
Confidence 9999999999999999999999999999999999 45668999999999999999999973 446777765553 3232
Q ss_pred ------HHHhhcC-Cccccccc--chhHHHHHHHHHhhCccCCHHHHHHHHHHhc
Q 000849 831 ------YKKFLYE-AFPVESHL--HHFLHDNFNAEIVAGVIENKQDAVDYLTWTF 876 (1254)
Q Consensus 831 ------~~~~l~~-~~pies~l--~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tf 876 (1254)
.+.++.. .+++.... ...|..++.+.++.+.+ +.++..+.++.+|
T Consensus 389 le~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~ 442 (1490)
T PRK09751 389 VDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAA 442 (1490)
T ss_pred HhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccC
Confidence 2334432 22322211 34667777777776543 4667667665555
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-41 Score=370.19 Aligned_cols=344 Identities=19% Similarity=0.222 Sum_probs=267.5
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|..|+|||.+++|.++.|+| +..| |.||||||.+|.+|+|..+.. .+.
T Consensus 201 y~~PTpIQ~a~IPvallgkD-Ica~------------------------------A~TGsGKTAAF~lPiLERLlY-rPk 248 (691)
T KOG0338|consen 201 YKKPTPIQVATIPVALLGKD-ICAC------------------------------AATGSGKTAAFALPILERLLY-RPK 248 (691)
T ss_pred CCCCCchhhhcccHHhhcch-hhhe------------------------------ecccCCchhhhHHHHHHHHhc-Ccc
Confidence 99999999999999998877 8888 999999999999999999887 333
Q ss_pred C--CcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh---hcccCcEEEEcHhhHHHHHHhhhcccccc
Q 000849 499 G--VMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQ 573 (1254)
Q Consensus 499 ~--~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~ 573 (1254)
+ ..+|||++|||+|+.|++...++ +..+..+.++...|+.+...+ ....+||+|+|||+|.+++++.. ...++
T Consensus 249 ~~~~TRVLVL~PTRELaiQv~sV~~q-laqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~-sf~ld 326 (691)
T KOG0338|consen 249 KVAATRVLVLVPTRELAIQVHSVTKQ-LAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP-SFNLD 326 (691)
T ss_pred cCcceeEEEEeccHHHHHHHHHHHHH-HHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC-Ccccc
Confidence 3 34899999999999999988876 666678999999999875432 33567999999999988888754 44799
Q ss_pred eeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccccEE
Q 000849 574 QVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVPLEI 652 (1254)
Q Consensus 574 ~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~l~~ 652 (1254)
++.++|+|||++|+++. +-..|..+...++++.|.+++|||+.+. ++++..--..+..+|.-++...+..+..
T Consensus 327 siEVLvlDEADRMLeeg------FademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQ 400 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG------FADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQ 400 (691)
T ss_pred ceeEEEechHHHHHHHH------HHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhH
Confidence 99999999999998543 4566777777778999999999999743 6666554444555555444444444443
Q ss_pred EEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhh
Q 000849 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSI 732 (1254)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 732 (1254)
.+.......-..+ ..| +...+.+. -...+|||+.|++.|..+.-
T Consensus 401 EFiRIR~~re~dR-ea~---l~~l~~rt--f~~~~ivFv~tKk~AHRl~I------------------------------ 444 (691)
T KOG0338|consen 401 EFIRIRPKREGDR-EAM---LASLITRT--FQDRTIVFVRTKKQAHRLRI------------------------------ 444 (691)
T ss_pred HHheecccccccc-HHH---HHHHHHHh--cccceEEEEehHHHHHHHHH------------------------------
Confidence 3322211100000 011 11222222 26789999999999988753
Q ss_pred cChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCC
Q 000849 733 IQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGR 810 (1254)
Q Consensus 733 ~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR 810 (1254)
|..+++..++-+||+|++++|...++.|++++++|||||+++++|+||+ +.+| +|..|.+...|+||+||+.|
T Consensus 445 -----llGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTAR 519 (691)
T KOG0338|consen 445 -----LLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTAR 519 (691)
T ss_pred -----HHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhh
Confidence 3345688899999999999999999999999999999999999999999 5555 99999999999999999999
Q ss_pred CCCCCCceEEEEccCCcHHHHHHhhcCCccccccc
Q 000849 811 PLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHL 845 (1254)
Q Consensus 811 ~g~d~~G~~iil~~~~~~~~~~~~l~~~~pies~l 845 (1254)
+|. .|.++.|+.+++...++..+.+..-..+.+
T Consensus 520 AGR--aGrsVtlvgE~dRkllK~iik~~~~a~~kl 552 (691)
T KOG0338|consen 520 AGR--AGRSVTLVGESDRKLLKEIIKSSTKAGSKL 552 (691)
T ss_pred ccc--CcceEEEeccccHHHHHHHHhhhhhcccch
Confidence 998 899999999999888887776544333433
No 20
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=385.73 Aligned_cols=396 Identities=26% Similarity=0.387 Sum_probs=301.7
Q ss_pred HHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhh
Q 000849 445 LSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKF 524 (1254)
Q Consensus 445 ~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~ 524 (1254)
.....||++..+|++++..+.++-.|.|.|+|.+|||++|+.+|.-.-.+ .. |++|.+|.+||.+|.+++|++.|
T Consensus 290 ~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---~T--R~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 290 MALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---MT--RTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred HHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---cc--ceEecchhhhhccchHHHHHHhc
Confidence 34568999999999999999999999999999999999999988754443 34 99999999999999999999999
Q ss_pred ccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHH
Q 000849 525 GKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRY 603 (1254)
Q Consensus 525 ~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~ 603 (1254)
+. ++.+|||...+ ..+.++|+|.|.|.+++-+. ...+.++.+||+||+|.++| +||.+||.++-.
T Consensus 365 ~D-----vgLlTGDvqin----PeAsCLIMTTEILRsMLYrg--adliRDvE~VIFDEVHYiND~eRGvVWEEViIM--- 430 (1248)
T KOG0947|consen 365 GD-----VGLLTGDVQIN----PEASCLIMTTEILRSMLYRG--ADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM--- 430 (1248)
T ss_pred cc-----cceeecceeeC----CCcceEeehHHHHHHHHhcc--cchhhccceEEEeeeeecccccccccceeeeee---
Confidence 86 44899998766 36789999999998887763 34588999999999999999 999999987643
Q ss_pred HHhhcCCCcEEEEecCCCCChHHHHHhhcCCC-CeeEecCCCCcccccEEEEeeccCCC-------------hHHHHHhh
Q 000849 604 IASQVENKIRIVALSTSLANAKDLGEWIGASS-HGVFNFPPGVRPVPLEIQIQGVDITN-------------FEARMKAM 669 (1254)
Q Consensus 604 ~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~-~~~~~~~~~~r~v~l~~~~~~~~~~~-------------~~~~~~~~ 669 (1254)
++.++++|++|||+||..++++|+|..+ ..++..+...||||++.++......- +.......
T Consensus 431 ----lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 431 ----LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred ----ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhh
Confidence 3789999999999999999999999875 45667777899999997764321100 00000000
Q ss_pred ------------------------------------------C--HHHHHHHHhhh--hcCCCeEEEecChhhHHHHHHH
Q 000849 670 ------------------------------------------T--KPTYTAIMQHA--KNEKPALVFVPSRKYARLTAVD 703 (1254)
Q Consensus 670 ------------------------------------------~--~~~~~~i~~~~--~~~~~~lVF~~s~~~~~~la~~ 703 (1254)
. .+.|..+..++ .+--|++|||-|++.|+..|..
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 0 02344444443 3456899999999999999998
Q ss_pred HHHHhhccCcccccccccChhchhhHHh----hcC--h------HHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCce
Q 000849 704 LMIYSCKDSDQKSAFLLCSAKEVEPHVS----IIQ--E------EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIK 771 (1254)
Q Consensus 704 L~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~--~------~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~ 771 (1254)
|...-..+. +...++.-+++ .+. | ..+.+++..|+++||||+-+--++.|+.+|..|-++
T Consensus 587 L~~~nL~~~--------~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVK 658 (1248)
T KOG0947|consen 587 LTNLNLTDS--------KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVK 658 (1248)
T ss_pred HhccCcccc--------hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceE
Confidence 864322211 12223332222 221 2 356677789999999999999999999999999999
Q ss_pred EEEeCcccccccCCcceee--------ccccc--CCHHHHHHhhcccCCCCCCCCceEEEEccCC--cHHHHHHhhc-CC
Q 000849 772 VCVMSSSMCWEVPLTAHLA--------TGRKM--LILTTLLQMMGHAGRPLLDNSEKCVILCHAP--HKEYYKKFLY-EA 838 (1254)
Q Consensus 772 VLVaT~~l~~Gvdip~~~V--------~~~~~--~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~--~~~~~~~~l~-~~ 838 (1254)
||+||.++++|||.|+++| +|... ..+-+|.||+|||||.|.|..|.+++++... .....++++. .+
T Consensus 659 VLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~ 738 (1248)
T KOG0947|consen 659 VLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGP 738 (1248)
T ss_pred EEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCC
Confidence 9999999999999998777 33332 7889999999999999999999999999865 4566666655 78
Q ss_pred cccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhc
Q 000849 839 FPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF 876 (1254)
Q Consensus 839 ~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tf 876 (1254)
.+++|++.-...-.||-.-+. .-.+-|.++.+|
T Consensus 739 ~~L~SQFRlTY~MILnLLRve-----~lrvEdm~krSf 771 (1248)
T KOG0947|consen 739 TRLESQFRLTYGMILNLLRVE-----ALRVEDMMKRSF 771 (1248)
T ss_pred chhhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 889999865443333322111 133446677777
No 21
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1e-39 Score=397.21 Aligned_cols=332 Identities=15% Similarity=0.148 Sum_probs=241.7
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhc--
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRAS-- 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~-- 496 (1254)
|..|+|+|.+++|.++.+++ ++++ ||||||||++|++|++.++....
T Consensus 150 ~~~pt~iQ~~aip~~l~G~d-vI~~------------------------------ApTGSGKTlaylLP~l~~i~~~~~~ 198 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRD-MIGI------------------------------AETGSGKTLAFLLPAIVHINAQPLL 198 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCC-EEEE------------------------------eCCCChHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998865 5555 99999999999999998776421
Q ss_pred -CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch---hhcccCcEEEEcHhhHHHHHHhhhccccc
Q 000849 497 -ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYV 572 (1254)
Q Consensus 497 -~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l 572 (1254)
.+.++.+||++|||+||.|+.+.+.+ |+...++++..+.|+..... .....++|+|+||++|..++... ...+
T Consensus 199 ~~~~gp~~LIL~PTreLa~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~--~~~l 275 (545)
T PTZ00110 199 RYGDGPIVLVLAPTRELAEQIREQCNK-FGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--VTNL 275 (545)
T ss_pred cCCCCcEEEEECChHHHHHHHHHHHHH-HhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC--CCCh
Confidence 12346899999999999999999886 55555788888888765432 12345799999999997777653 3358
Q ss_pred ceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCC-c-ccc
Q 000849 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGV-R-PVP 649 (1254)
Q Consensus 573 ~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~-r-~v~ 649 (1254)
.++++||+||||++.+. | +...++.+.....+..|++++|||++.. ..++..+-......+...... . ...
T Consensus 276 ~~v~~lViDEAd~mld~-g-----f~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~ 349 (545)
T PTZ00110 276 RRVTYLVLDEADRMLDM-G-----FEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHN 349 (545)
T ss_pred hhCcEEEeehHHhhhhc-c-----hHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCC
Confidence 89999999999999862 2 1223344444456789999999999853 555554432211111111110 0 011
Q ss_pred cEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhH
Q 000849 650 LEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPH 729 (1254)
Q Consensus 650 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 729 (1254)
+...+.......... .+...+......+.++||||++++.|+.++..|...
T Consensus 350 i~q~~~~~~~~~k~~-------~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~---------------------- 400 (545)
T PTZ00110 350 IKQEVFVVEEHEKRG-------KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD---------------------- 400 (545)
T ss_pred eeEEEEEEechhHHH-------HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc----------------------
Confidence 122222111111111 111222222236789999999999999999877421
Q ss_pred HhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcc
Q 000849 730 VSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGH 807 (1254)
Q Consensus 730 ~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GR 807 (1254)
++.+..+||++++++|..+++.|++|+++|||||+++++|||+| .+||+++.|.++.+|+||+||
T Consensus 401 -------------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGR 467 (545)
T PTZ00110 401 -------------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467 (545)
T ss_pred -------------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 34577899999999999999999999999999999999999999 566799999999999999999
Q ss_pred cCCCCCCCCceEEEEccCCcHHHHHHh
Q 000849 808 AGRPLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 808 aGR~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
+||.|. .|.|++++++.+......+
T Consensus 468 tGR~G~--~G~ai~~~~~~~~~~~~~l 492 (545)
T PTZ00110 468 TGRAGA--KGASYTFLTPDKYRLARDL 492 (545)
T ss_pred cccCCC--CceEEEEECcchHHHHHHH
Confidence 999987 8999999998876555443
No 22
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-40 Score=344.57 Aligned_cols=301 Identities=31% Similarity=0.462 Sum_probs=255.0
Q ss_pred ccCcCcHHHHHHHHhCccccc-----cCCCChhhHHHHHHHHhhcCcc---cCCC-CCCChHHHHHHHHHHHhcCCCCCc
Q 000849 950 LTSKTKMKGLLEVLASASEYA-----QLPIRPGEEELVRRLINHQRFS---FANP-KCTDPHVKANALLQAHFSARHMEG 1020 (1254)
Q Consensus 950 l~~~~~~~~ll~ils~s~Ef~-----~l~~R~~e~~~l~~l~~~~~~~---~~~~-~~~~~~~K~~~Llqa~l~r~~l~~ 1020 (1254)
-+++|.++.++.+||.|.||+ ++.-|..+.-+.-.|.+.++-- .++. .....+.|+.+||+|||+|+++++
T Consensus 7 kTp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~ 86 (520)
T KOG4434|consen 7 RTPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLES 86 (520)
T ss_pred cCchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCCh
Confidence 456788899999999999996 5778888888888888876532 2222 233348999999999999999996
Q ss_pred -chHHhHHHHHHHHHHHHHHHHHHHHhc----------C--cHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHH
Q 000849 1021 -NLKLDQEKVLLSASRLLQAMVDVISSN----------G--WLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKR 1087 (1254)
Q Consensus 1021 -~l~~D~~~il~~~~rl~~a~~ei~~~~----------~--~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~ 1087 (1254)
.|..|+++|++.|++|++.|+.+.... . -..+.-|+|.|++|++||+|...+||+|||||+...+++
T Consensus 87 dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~ 166 (520)
T KOG4434|consen 87 DTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQH 166 (520)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHH
Confidence 799999999999999999999986433 1 244567999999999999999999999999999999999
Q ss_pred HHcCCCCCccCHHHHhcCCHHHHHHHhc-CChhhHHHHHHHhccCCceEEEEE--Eecc---cccccCCceEEEEEEEEe
Q 000849 1088 CQENPGRSIETVFDLLEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSYK--VQDS---ENVRAGGEDTTLQVVLER 1161 (1254)
Q Consensus 1088 l~~~~~~~i~~~~~l~~~~~~~~~~ll~-~~~~~~~~i~~~~~~~P~l~v~~~--v~~~---~~i~~~~~~~~l~v~l~r 1161 (1254)
+.++. .|++++||+.+.++.|..+|. +++.++++++.++.++|.+.++++ |.++ +.+|+ |.++|+.|+|+|
T Consensus 167 ~~KKr--~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~Ta-G~vVTv~Vtl~R 243 (520)
T KOG4434|consen 167 LRKKR--KVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTA-GCVVTVKVTLRR 243 (520)
T ss_pred Hhhhc--ccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceee-eeEEEEEEEEEe
Confidence 87433 299999999999999999998 999999999999999999987654 4443 46899 999999999988
Q ss_pred cC------------------CC---C----------------------------C-------------------------
Q 000849 1162 DL------------------GG---R----------------------------T------------------------- 1167 (1254)
Q Consensus 1162 ~~------------------~~---~----------------------------~------------------------- 1167 (1254)
.- ++ + .
T Consensus 244 ~~l~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas 323 (520)
T KOG4434|consen 244 SRLIDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAAS 323 (520)
T ss_pred ccccChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCC
Confidence 41 00 0 0
Q ss_pred -------------------------------------------------------------------------CcCcccc
Q 000849 1168 -------------------------------------------------------------------------ELGPVYS 1174 (1254)
Q Consensus 1168 -------------------------------------------------------------------------~~~~v~~ 1174 (1254)
....|||
T Consensus 324 ~at~ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~ 403 (520)
T KOG4434|consen 324 PATEKALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHS 403 (520)
T ss_pred hhhhhhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeecc
Confidence 0137999
Q ss_pred CCCCCCCcccEEEEEEeCCCCeEEEEE--EeeecccceEEEEEEeecCCCceEEEEEEEeCCccccCeEEEEEEEeecCC
Q 000849 1175 NRYPKAKEEGWWLVVDDAKTNQLLAIK--RVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAG 1252 (1254)
Q Consensus 1175 p~~p~~k~e~wwv~v~d~~~~~l~~~~--~~~~~~~~~~~~~f~~p~~~g~~~~~v~~~sD~y~G~D~~~~~~~~v~~~~ 1252 (1254)
||||.+|.|.||++|.|.++..|+.+. -+++....++.+.|++|..||.|+|+|++.||||+|+|+..++++.|++|+
T Consensus 404 pyFPeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk 483 (520)
T KOG4434|consen 404 PYFPEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAK 483 (520)
T ss_pred CCCcchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCC
Confidence 999999999999999999999999864 345667889999999999999999999999999999999999999999886
Q ss_pred C
Q 000849 1253 E 1253 (1254)
Q Consensus 1253 ~ 1253 (1254)
.
T Consensus 484 ~ 484 (520)
T KOG4434|consen 484 P 484 (520)
T ss_pred C
Confidence 3
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.9e-40 Score=395.88 Aligned_cols=329 Identities=17% Similarity=0.227 Sum_probs=244.2
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcC-
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASE- 497 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~- 497 (1254)
|..|+|+|.++++.++++++ ++++ ||||||||++|++|+++.+.....
T Consensus 21 ~~~pt~iQ~~ai~~il~g~d-vlv~------------------------------apTGsGKTla~~lpil~~l~~~~~~ 69 (456)
T PRK10590 21 YREPTPIQQQAIPAVLEGRD-LMAS------------------------------AQTGTGKTAGFTLPLLQHLITRQPH 69 (456)
T ss_pred CCCCCHHHHHHHHHHhCCCC-EEEE------------------------------CCCCCcHHHHHHHHHHHHhhhcccc
Confidence 89999999999999998754 6666 999999999999999998865311
Q ss_pred ---CCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh---hcccCcEEEEcHhhHHHHHHhhhcccc
Q 000849 498 ---TGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKY 571 (1254)
Q Consensus 498 ---~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~ 571 (1254)
...+++||++||++||.|+++.+.+... ..++++..++|+...+.. ....++|+|+||++|..+.... ...
T Consensus 70 ~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~--~~~ 146 (456)
T PRK10590 70 AKGRRPVRALILTPTRELAAQIGENVRDYSK-YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN--AVK 146 (456)
T ss_pred cccCCCceEEEEeCcHHHHHHHHHHHHHHhc-cCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC--Ccc
Confidence 1234899999999999999999987544 458888888888765432 2345799999999997766542 335
Q ss_pred cceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCccccc
Q 000849 572 VQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVPL 650 (1254)
Q Consensus 572 l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~l 650 (1254)
++++++|||||||++.+.. +...++.+...++...|++++|||+++. .+++.++...+..+...........+
T Consensus 147 l~~v~~lViDEah~ll~~~------~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i 220 (456)
T PRK10590 147 LDQVEILVLDEADRMLDMG------FIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQV 220 (456)
T ss_pred cccceEEEeecHHHHhccc------cHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccce
Confidence 8899999999999998622 1223334444456778999999999863 66666655444333222222112222
Q ss_pred EEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHH
Q 000849 651 EIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHV 730 (1254)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 730 (1254)
...+...+.. .. ......+... ....++||||+++..++.++..|...
T Consensus 221 ~~~~~~~~~~---~k-----~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~----------------------- 268 (456)
T PRK10590 221 TQHVHFVDKK---RK-----RELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKD----------------------- 268 (456)
T ss_pred eEEEEEcCHH---HH-----HHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHC-----------------------
Confidence 2222222111 11 1122222222 45678999999999999998877421
Q ss_pred hhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhccc
Q 000849 731 SIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHA 808 (1254)
Q Consensus 731 ~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRa 808 (1254)
+..+..+||+|++++|..+++.|++|+++|||||+++++|||+| .++|+++.|.+..+|+||+|||
T Consensus 269 ------------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRa 336 (456)
T PRK10590 269 ------------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336 (456)
T ss_pred ------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccc
Confidence 44678899999999999999999999999999999999999999 4677999999999999999999
Q ss_pred CCCCCCCCceEEEEccCCcHHHHHH
Q 000849 809 GRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 809 GR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
||.|. .|.|++++...+...++.
T Consensus 337 GR~g~--~G~ai~l~~~~d~~~~~~ 359 (456)
T PRK10590 337 GRAAA--TGEALSLVCVDEHKLLRD 359 (456)
T ss_pred ccCCC--CeeEEEEecHHHHHHHHH
Confidence 99986 799998888776554443
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.7e-40 Score=400.44 Aligned_cols=332 Identities=19% Similarity=0.237 Sum_probs=240.3
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh---
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA--- 495 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~--- 495 (1254)
|..|+|+|.++++.++.+++ ++++ ||||||||++|++|++..+...
T Consensus 141 ~~~ptpiQ~~aip~il~g~d-viv~------------------------------ApTGSGKTlayllPil~~l~~~~~~ 189 (518)
T PLN00206 141 YEFPTPIQMQAIPAALSGRS-LLVS------------------------------ADTGSGKTASFLVPIISRCCTIRSG 189 (518)
T ss_pred CCCCCHHHHHHHHHHhcCCC-EEEE------------------------------ecCCCCccHHHHHHHHHHHHhhccc
Confidence 99999999999999998754 6666 9999999999999999877532
Q ss_pred --cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch---hhcccCcEEEEcHhhHHHHHHhhhccc
Q 000849 496 --SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK 570 (1254)
Q Consensus 496 --~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~ 570 (1254)
....+++++|++|||+||.|+.+.++. +....++++..+.|+..... +....++|+|+||++|..++.+. ..
T Consensus 190 ~~~~~~~~~aLIL~PTreLa~Qi~~~~~~-l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--~~ 266 (518)
T PLN00206 190 HPSEQRNPLAMVLTPTRELCVQVEDQAKV-LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--DI 266 (518)
T ss_pred cccccCCceEEEEeCCHHHHHHHHHHHHH-HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--Cc
Confidence 112346999999999999999888876 44445777777776654332 22345699999999997777653 44
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccc
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVP 649 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~ 649 (1254)
.+++++++|+||||++.+ .| ++..+. .+.... ++.|++++|||+++. +.++.++..... .+......++..
T Consensus 267 ~l~~v~~lViDEad~ml~-~g--f~~~i~---~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~~~~~~ 338 (518)
T PLN00206 267 ELDNVSVLVLDEVDCMLE-RG--FRDQVM---QIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDII-LISIGNPNRPNK 338 (518)
T ss_pred cchheeEEEeecHHHHhh-cc--hHHHHH---HHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCCCCCCc
Confidence 689999999999999985 22 111122 222222 467999999999864 567776655432 223332222221
Q ss_pred -cEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhh
Q 000849 650 -LEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728 (1254)
Q Consensus 650 -l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~ 728 (1254)
+............. ..++..+........++||||+++..++.++..|...
T Consensus 339 ~v~q~~~~~~~~~k~-------~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------------------- 390 (518)
T PLN00206 339 AVKQLAIWVETKQKK-------QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------------------- 390 (518)
T ss_pred ceeEEEEeccchhHH-------HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc---------------------
Confidence 12222111111111 1122333222123468999999999999888766321
Q ss_pred HHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhc
Q 000849 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMG 806 (1254)
Q Consensus 729 ~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~G 806 (1254)
.+..+..+||+|++++|..+++.|++|+++|||||+++++|||+| .++|+++.|.+..+|+||+|
T Consensus 391 -------------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiG 457 (518)
T PLN00206 391 -------------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIG 457 (518)
T ss_pred -------------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcc
Confidence 144678899999999999999999999999999999999999999 56779999999999999999
Q ss_pred ccCCCCCCCCceEEEEccCCcHHHHHHhh
Q 000849 807 HAGRPLLDNSEKCVILCHAPHKEYYKKFL 835 (1254)
Q Consensus 807 RaGR~g~d~~G~~iil~~~~~~~~~~~~l 835 (1254)
||||.|. .|.+++|+++++...+..++
T Consensus 458 RaGR~g~--~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 458 RASRMGE--KGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred ccccCCC--CeEEEEEEchhHHHHHHHHH
Confidence 9999986 89999999988766665543
No 25
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.6e-40 Score=396.06 Aligned_cols=325 Identities=18% Similarity=0.192 Sum_probs=244.4
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|..|+|+|.+|++.++++++ ++++ ||||||||++|.+|+++.+.....
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~d-vi~~------------------------------a~TGsGKT~a~~lpil~~l~~~~~- 71 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKD-VIAQ------------------------------AKTGSGKTAAFGLGLLQKLDVKRF- 71 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCC-EEEE------------------------------CCCCCcHHHHHHHHHHHHhhhccC-
Confidence 89999999999999998754 6666 999999999999999998865222
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh---hcccCcEEEEcHhhHHHHHHhhhccccccee
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQV 575 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v 575 (1254)
.++++|++||++||.|+.+.++.......++++..++|+.+...+ ....++|+|+||++|..++++. ...++++
T Consensus 72 -~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~--~~~l~~l 148 (460)
T PRK11776 72 -RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG--TLDLDAL 148 (460)
T ss_pred -CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC--CccHHHC
Confidence 348999999999999999999875443347889999998765422 2245699999999998877652 3458899
Q ss_pred eEEEecccccccCC-CccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccccEEE
Q 000849 576 SLFIIDELHLIGGQ-GGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVPLEIQ 653 (1254)
Q Consensus 576 ~liIiDEaH~l~~~-~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~l~~~ 653 (1254)
+++|+||||++.+. .... +..+....+...|++++|||+++. ..++..+...+..+ ..........+...
T Consensus 149 ~~lViDEad~~l~~g~~~~-------l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i-~~~~~~~~~~i~~~ 220 (460)
T PRK11776 149 NTLVLDEADRMLDMGFQDA-------IDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEV-KVESTHDLPAIEQR 220 (460)
T ss_pred CEEEEECHHHHhCcCcHHH-------HHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEE-EECcCCCCCCeeEE
Confidence 99999999999863 3223 333444456788999999999854 45555443333222 22222222223333
Q ss_pred EeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhc
Q 000849 654 IQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSII 733 (1254)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 733 (1254)
+....... +.. ....+... ....++||||++++.++.++..|...
T Consensus 221 ~~~~~~~~---k~~-----~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~-------------------------- 265 (460)
T PRK11776 221 FYEVSPDE---RLP-----ALQRLLLH-HQPESCVVFCNTKKECQEVADALNAQ-------------------------- 265 (460)
T ss_pred EEEeCcHH---HHH-----HHHHHHHh-cCCCceEEEECCHHHHHHHHHHHHhC--------------------------
Confidence 33222211 111 11222222 45678999999999999999877432
Q ss_pred ChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccCCC
Q 000849 734 QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRP 811 (1254)
Q Consensus 734 ~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~ 811 (1254)
+..+..+||+|++.+|+.+++.|++|.++|||||+++++|+|+| .++|+++.|.+..+|+||+|||||.
T Consensus 266 ---------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~ 336 (460)
T PRK11776 266 ---------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRA 336 (460)
T ss_pred ---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCC
Confidence 45688999999999999999999999999999999999999999 5677999999999999999999999
Q ss_pred CCCCCceEEEEccCCcHHHHH
Q 000849 812 LLDNSEKCVILCHAPHKEYYK 832 (1254)
Q Consensus 812 g~d~~G~~iil~~~~~~~~~~ 832 (1254)
|. .|.|+.++.+.+...+.
T Consensus 337 g~--~G~ai~l~~~~e~~~~~ 355 (460)
T PRK11776 337 GS--KGLALSLVAPEEMQRAN 355 (460)
T ss_pred CC--cceEEEEEchhHHHHHH
Confidence 86 79999999887655443
No 26
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-40 Score=419.82 Aligned_cols=285 Identities=25% Similarity=0.354 Sum_probs=239.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|+.||++|++|.++|||||+|||||||+|+++|||+||++||+..| +.|+++.+|+||+|||||+|+|..|+++
T Consensus 313 l~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g-~~~~s~~~y~Qm~GRAGR~g~d~~G~~i 391 (737)
T PRK02362 313 LSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAG-MQPIPVLEYHQMAGRAGRPGLDPYGEAV 391 (737)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCC-ceeCCHHHHHHHhhcCCCCCCCCCceEE
Confidence 688999999999999999999999999999999999999999999998764 6899999999999999999999999999
Q ss_pred EEecCC--cHHHHHHhh-cCCCCchhhHH--HHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcC
Q 000849 81 IITGHS--ELQYYLSLM-NQQLPIESQFV--SKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL 155 (1254)
Q Consensus 81 i~~~~~--~~~~~~~~~-~~~~~i~s~l~--~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~ 155 (1254)
+++..+ ..+.|.+++ .+++|++|+|. ..+.+++|++|+.|++.+.+|+.+|+++||+|++..
T Consensus 392 i~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~------------- 458 (737)
T PRK02362 392 LLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTD------------- 458 (737)
T ss_pred EEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhcc-------------
Confidence 999874 234567766 57889999995 489999999999999999999999999999987631
Q ss_pred chhHHHHHHHHHHHHHHHhhhcCcccccCccCceeec-------------------------------------------
Q 000849 156 DITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSE------------------------------------------- 192 (1254)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t------------------------------------------- 192 (1254)
..+++.+++++++++|+++|||..+ ++.+.+|
T Consensus 459 ---~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e 533 (737)
T PRK02362 459 ---DTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPD 533 (737)
T ss_pred ---chHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCcc
Confidence 2345678899999999999999876 4567787
Q ss_pred --------ccHHHHHHHh--------ccCCccCCCC-CCC--hhHHHHHHHHHHHccccc----cCccccc-cC-----c
Q 000849 193 --------KIKMELAKLL--------DRVPIPVKES-LEE--PSAKINVLLQTYISQLKL----EGLSLTS-DM-----S 243 (1254)
Q Consensus 193 --------~e~~~l~~l~--------~~~~~~~~~~-~~~--~~~Kv~~Llq~~is~~~~----~~~~l~~-D~-----~ 243 (1254)
+|...+.++. .++|.+..+. ++. ++.|+++|||+||++.++ +.|++.+ |+ +
T Consensus 534 ~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~ 613 (737)
T PRK02362 534 MYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVET 613 (737)
T ss_pred ccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHH
Confidence 1111222222 1222222211 122 678999999999999996 4677744 66 9
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCcccccCCCCHHHHHHHHhcCCC
Q 000849 244 AGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF 305 (1254)
Q Consensus 244 a~ri~~a~~ei~~~~~~~~~a~~~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~ 305 (1254)
+.|+++|+.++|...+| ..+..+.+|++|+.+|+|++.+||.|+||+|+.++|+|+++|+.
T Consensus 614 ~~~l~~a~~~i~~~~~~-~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi~ 674 (737)
T PRK02362 614 AEWLLHAAERLASELDL-DLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIE 674 (737)
T ss_pred HHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCCC
Confidence 99999999999988654 57889999999999999999999999999999999999999987
No 27
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6.7e-40 Score=372.16 Aligned_cols=382 Identities=25% Similarity=0.370 Sum_probs=290.4
Q ss_pred hhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcc
Q 000849 447 RKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK 526 (1254)
Q Consensus 447 ~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~ 526 (1254)
+..||++.++|..++.+|+++..|+|+|.|.+|||.++..+|...+.. +. +|||..|.+||.+|.|+++...|+.
T Consensus 124 k~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQ--RVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 124 KTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQ--RVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred cCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cC--eEEeeChhhhhcchhHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999998887 55 9999999999999999999999975
Q ss_pred ccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHH
Q 000849 527 ELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIA 605 (1254)
Q Consensus 527 ~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~ 605 (1254)
|+..|||...+ ..+..+|+|.|.|.+++-+. ...+..+.+||+||+|.+-| +||.+||.-+-.
T Consensus 199 -----VGLMTGDVTIn----P~ASCLVMTTEILRsMLYRG--SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl----- 262 (1041)
T KOG0948|consen 199 -----VGLMTGDVTIN----PDASCLVMTTEILRSMLYRG--SEVMREVAWVIFDEIHYMRDKERGVVWEETIIL----- 262 (1041)
T ss_pred -----cceeecceeeC----CCCceeeeHHHHHHHHHhcc--chHhheeeeEEeeeehhccccccceeeeeeEEe-----
Confidence 78889998766 35788999999998887763 44689999999999999999 899999865432
Q ss_pred hhcCCCcEEEEecCCCCChHHHHHhhcCC-CCeeEecCCCCcccccEEEEeec---------------cCCChHHHHHhh
Q 000849 606 SQVENKIRIVALSTSLANAKDLGEWIGAS-SHGVFNFPPGVRPVPLEIQIQGV---------------DITNFEARMKAM 669 (1254)
Q Consensus 606 ~~~~~~~rii~lSATl~~~~~l~~~l~~~-~~~~~~~~~~~r~v~l~~~~~~~---------------~~~~~~~~~~~~ 669 (1254)
++.+.|.|++|||+||+.++++|+..- .......-..+||.|++.++... ...++...+..+
T Consensus 263 --lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l 340 (1041)
T KOG0948|consen 263 --LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVL 340 (1041)
T ss_pred --ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHh
Confidence 378999999999999999999998532 22333345688999998775431 111222222111
Q ss_pred CH---------------------------HHHHHHHhhh-hcCCCeEEEecChhhHHHHHHHHHHHhhccCccccccccc
Q 000849 670 TK---------------------------PTYTAIMQHA-KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLC 721 (1254)
Q Consensus 670 ~~---------------------------~~~~~i~~~~-~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~ 721 (1254)
.+ .+|..+.... .+..|+|||+-|+++|+..|..+.+.--++..... .+
T Consensus 341 ~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~-~V-- 417 (1041)
T KOG0948|consen 341 RKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKE-LV-- 417 (1041)
T ss_pred hccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHH-HH--
Confidence 10 2333332221 45679999999999999999877543222211111 00
Q ss_pred ChhchhhHHhhcC--------hHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcceee---
Q 000849 722 SAKEVEPHVSIIQ--------EEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA--- 790 (1254)
Q Consensus 722 ~~~~l~~~~~~~~--------~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~~~V--- 790 (1254)
.......+..+. -+.+..++..||++|||||-+--++.|+-+|.+|-+++|+||.+++.|+|.|+.+|
T Consensus 418 -~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 418 -ETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred -HHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 000111122221 24455677899999999999999999999999999999999999999999998777
Q ss_pred -----ccccc--CCHHHHHHhhcccCCCCCCCCceEEEEccCCcH-HHHHHhhc-CCcccccccchhHHHHHHH
Q 000849 791 -----TGRKM--LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHK-EYYKKFLY-EAFPVESHLHHFLHDNFNA 855 (1254)
Q Consensus 791 -----~~~~~--~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~-~~~~~~l~-~~~pies~l~~~l~~~l~~ 855 (1254)
+|... .|--+|+||.|||||.|.|+.|.|+++.++.-. ...+.++. ..-|+.|.++-.-.-.||-
T Consensus 497 ~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNL 570 (1041)
T KOG0948|consen 497 AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNL 570 (1041)
T ss_pred eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHH
Confidence 33322 688899999999999999999999999998753 34455555 5678888886554444443
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-39 Score=394.53 Aligned_cols=327 Identities=17% Similarity=0.196 Sum_probs=236.9
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhc--
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRAS-- 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~-- 496 (1254)
|..|+|+|.++++.++.+++ ++++ ||||||||++|++|+++.+....
T Consensus 29 ~~~ptpiQ~~~ip~~l~G~D-vi~~------------------------------ApTGSGKTlafllpil~~l~~~~~~ 77 (572)
T PRK04537 29 FTRCTPIQALTLPVALPGGD-VAGQ------------------------------AQTGTGKTLAFLVAVMNRLLSRPAL 77 (572)
T ss_pred CCCCCHHHHHHHHHHhCCCC-EEEE------------------------------cCCCCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998865 5555 99999999999999999886421
Q ss_pred ---CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--hc-ccCcEEEEcHhhHHHHHHhhhccc
Q 000849 497 ---ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRK 570 (1254)
Q Consensus 497 ---~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~-~~~~Iiv~Tpe~l~~l~~~~~~~~ 570 (1254)
....+++||++||++||.|+++.+.+ +....++++..++|+...+.. .+ ..++|+|+||++|..+++... ..
T Consensus 78 ~~~~~~~~raLIl~PTreLa~Qi~~~~~~-l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~ 155 (572)
T PRK04537 78 ADRKPEDPRALILAPTRELAIQIHKDAVK-FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VV 155 (572)
T ss_pred cccccCCceEEEEeCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-cc
Confidence 11235999999999999999999887 444458999999998765432 22 356999999999977765432 23
Q ss_pred ccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HH-HHHhhcCCCCeeEecCCCCcc
Q 000849 571 YVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KD-LGEWIGASSHGVFNFPPGVRP 647 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~-l~~~l~~~~~~~~~~~~~~r~ 647 (1254)
.+..+++|||||||++.+ .+...++.++.++.. ....|++++|||+++. .. ...++... ..+..-......
T Consensus 156 ~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~-----~~~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~ 229 (572)
T PRK04537 156 SLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE-----RGTRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITA 229 (572)
T ss_pred chhheeeeEecCHHHHhhcchHHHHHHHHHhccc-----ccCceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccc
Confidence 478899999999999985 333333333332211 1267999999999753 22 23444332 122211111111
Q ss_pred cccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchh
Q 000849 648 VPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVE 727 (1254)
Q Consensus 648 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~ 727 (1254)
..+...+... ....+. ..+..+... ..+.++||||+|++.++.++..|...
T Consensus 230 ~~i~q~~~~~---~~~~k~-----~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~-------------------- 280 (572)
T PRK04537 230 ARVRQRIYFP---ADEEKQ-----TLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERH-------------------- 280 (572)
T ss_pred cceeEEEEec---CHHHHH-----HHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHc--------------------
Confidence 1222222111 111111 111122222 45789999999999999999877431
Q ss_pred hHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhh
Q 000849 728 PHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMM 805 (1254)
Q Consensus 728 ~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~ 805 (1254)
++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+| .++|+++.|.+..+|+||+
T Consensus 281 ---------------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRi 345 (572)
T PRK04537 281 ---------------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRI 345 (572)
T ss_pred ---------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhh
Confidence 45689999999999999999999999999999999999999999 4666999999999999999
Q ss_pred cccCCCCCCCCceEEEEccCCcHHH
Q 000849 806 GHAGRPLLDNSEKCVILCHAPHKEY 830 (1254)
Q Consensus 806 GRaGR~g~d~~G~~iil~~~~~~~~ 830 (1254)
|||||.|. .|.|++|+.+.+...
T Consensus 346 GRaGR~G~--~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 346 GRTARLGE--EGDAISFACERYAMS 368 (572)
T ss_pred cccccCCC--CceEEEEecHHHHHH
Confidence 99999997 799999988755433
No 29
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-39 Score=390.15 Aligned_cols=327 Identities=18% Similarity=0.271 Sum_probs=246.3
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-cC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-SE 497 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-~~ 497 (1254)
|..|+|+|.+++|.++.+++ ++++|+||||||.+|.+|+++.+... ..
T Consensus 49 f~~pt~IQ~~~IP~~l~g~D-------------------------------vi~~A~TGsGKT~Af~lP~l~~l~~~~~~ 97 (513)
T COG0513 49 FEEPTPIQLAAIPLILAGRD-------------------------------VLGQAQTGTGKTAAFLLPLLQKILKSVER 97 (513)
T ss_pred CCCCCHHHHHHHHHHhCCCC-------------------------------EEEECCCCChHHHHHHHHHHHHHhccccc
Confidence 99999999999999999866 44559999999999999999997741 22
Q ss_pred CCCcEEEEEcchHHHHHHHHHHHHHhhcccc-CcEEEEeccccccch--hhcc-cCcEEEEcHhhHHHHHHhhhcccccc
Q 000849 498 TGVMRAVYIAPIEALAKQRYCDWERKFGKEL-GMCVVELTVETAMDL--KLLE-KGQIIISTPEKWDALSRRWKQRKYVQ 573 (1254)
Q Consensus 498 ~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~-~~~v~~~~g~~~~~~--~~~~-~~~Iiv~Tpe~l~~l~~~~~~~~~l~ 573 (1254)
... .+++++|||+||.|+++.+.+ ++... ++++..++|+.+... ..+. .++|+|+||+++.+++.+. ...+.
T Consensus 98 ~~~-~aLil~PTRELA~Qi~~~~~~-~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--~l~l~ 173 (513)
T COG0513 98 KYV-SALILAPTRELAVQIAEELRK-LGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--KLDLS 173 (513)
T ss_pred CCC-ceEEECCCHHHHHHHHHHHHH-HHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--Ccchh
Confidence 221 299999999999999999987 55555 688999999876543 2333 4799999999998888774 45699
Q ss_pred eeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHH-HhhcCCCCeeEecCCCC--cccc
Q 000849 574 QVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLG-EWIGASSHGVFNFPPGV--RPVP 649 (1254)
Q Consensus 574 ~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~-~~l~~~~~~~~~~~~~~--r~v~ 649 (1254)
.+.++|+||||.|.+. | +...+..+.+..+.+.|++++|||+++. ..++ .++. ++..+..-.... -+..
T Consensus 174 ~v~~lVlDEADrmLd~-G-----f~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~ 246 (513)
T COG0513 174 GVETLVLDEADRMLDM-G-----FIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKK 246 (513)
T ss_pred hcCEEEeccHhhhhcC-C-----CHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccC
Confidence 9999999999999974 2 3444555555557789999999999873 2233 3333 332222211222 2233
Q ss_pred cEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhH
Q 000849 650 LEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPH 729 (1254)
Q Consensus 650 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 729 (1254)
+...+....... .+.. ....+.+. ....++||||+|+..++.++..|...
T Consensus 247 i~q~~~~v~~~~--~k~~-----~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l~~~---------------------- 296 (513)
T COG0513 247 IKQFYLEVESEE--EKLE-----LLLKLLKD-EDEGRVIVFVRTKRLVEELAESLRKR---------------------- 296 (513)
T ss_pred ceEEEEEeCCHH--HHHH-----HHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHHC----------------------
Confidence 333333332211 1111 12222232 34457999999999999998776432
Q ss_pred HhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcc
Q 000849 730 VSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGH 807 (1254)
Q Consensus 730 ~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GR 807 (1254)
++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+| .+||+++.|.+..+|+||+||
T Consensus 297 -------------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGR 363 (513)
T COG0513 297 -------------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGR 363 (513)
T ss_pred -------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCc
Confidence 56799999999999999999999999999999999999999999 677899999999999999999
Q ss_pred cCCCCCCCCceEEEEccCC-cHHHHH
Q 000849 808 AGRPLLDNSEKCVILCHAP-HKEYYK 832 (1254)
Q Consensus 808 aGR~g~d~~G~~iil~~~~-~~~~~~ 832 (1254)
+||.|. .|.++.|+.+. +...+.
T Consensus 364 TgRaG~--~G~ai~fv~~~~e~~~l~ 387 (513)
T COG0513 364 TGRAGR--KGVAISFVTEEEEVKKLK 387 (513)
T ss_pred cccCCC--CCeEEEEeCcHHHHHHHH
Confidence 999997 89999999875 444443
No 30
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-40 Score=391.85 Aligned_cols=326 Identities=16% Similarity=0.167 Sum_probs=235.7
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcC-
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASE- 497 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~- 497 (1254)
|..|+|+|.++++.++++++ ++++ ||||||||++|++|+++.+.....
T Consensus 28 ~~~pt~iQ~~aip~il~g~d-vi~~------------------------------ApTGsGKTla~llp~l~~l~~~~~~ 76 (423)
T PRK04837 28 FHNCTPIQALALPLTLAGRD-VAGQ------------------------------AQTGTGKTMAFLTATFHYLLSHPAP 76 (423)
T ss_pred CCCCCHHHHHHHHHHhCCCc-EEEE------------------------------CCCCchHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998755 5555 999999999999999988865311
Q ss_pred ----CCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch--hhc-ccCcEEEEcHhhHHHHHHhhhccc
Q 000849 498 ----TGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRK 570 (1254)
Q Consensus 498 ----~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~ 570 (1254)
..+++++|++||++||.|+++.+..... ..|+++..+.|+..... ..+ ..++|+|+||+++..+++. ...
T Consensus 77 ~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~ 153 (423)
T PRK04837 77 EDRKVNQPRALIMAPTRELAVQIHADAEPLAQ-ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHI 153 (423)
T ss_pred cccccCCceEEEECCcHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCc
Confidence 1236899999999999999999887444 45899999888765432 222 3569999999999777765 234
Q ss_pred ccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCh-HHHH-HhhcCCCCeeEecCCCC
Q 000849 571 YVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVE--NKIRIVALSTSLANA-KDLG-EWIGASSHGVFNFPPGV 645 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~--~~~rii~lSATl~~~-~~l~-~~l~~~~~~~~~~~~~~ 645 (1254)
.+.+++++|+||||++.+ .....++.+ ....+ ...+.+++|||++.. ..+. .++... . .....+..
T Consensus 154 ~l~~v~~lViDEad~l~~~~f~~~i~~i-------~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p-~-~i~v~~~~ 224 (423)
T PRK04837 154 NLGAIQVVVLDEADRMFDLGFIKDIRWL-------FRRMPPANQRLNMLFSATLSYRVRELAFEHMNNP-E-YVEVEPEQ 224 (423)
T ss_pred ccccccEEEEecHHHHhhcccHHHHHHH-------HHhCCCccceeEEEEeccCCHHHHHHHHHHCCCC-E-EEEEcCCC
Confidence 588999999999999985 232333322 22223 345679999999743 3332 334322 1 22222211
Q ss_pred c-ccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChh
Q 000849 646 R-PVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAK 724 (1254)
Q Consensus 646 r-~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~ 724 (1254)
. ...+...+... ....+.. ....+... ....++||||+++..|+.++..|...
T Consensus 225 ~~~~~i~~~~~~~---~~~~k~~-----~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~----------------- 278 (423)
T PRK04837 225 KTGHRIKEELFYP---SNEEKMR-----LLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAAD----------------- 278 (423)
T ss_pred cCCCceeEEEEeC---CHHHHHH-----HHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhC-----------------
Confidence 1 11122211111 1111111 11122222 34678999999999999998877421
Q ss_pred chhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHH
Q 000849 725 EVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLL 802 (1254)
Q Consensus 725 ~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~ 802 (1254)
++.+..+||+|++++|..+++.|++|+++|||||+++++|+|+| .++|+++.|.+..+|+
T Consensus 279 ------------------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yi 340 (423)
T PRK04837 279 ------------------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYV 340 (423)
T ss_pred ------------------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheE
Confidence 45789999999999999999999999999999999999999999 5667999999999999
Q ss_pred HhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849 803 QMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 803 Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
||+||+||.|. .|.|+.|..+.+...+..
T Consensus 341 qR~GR~gR~G~--~G~ai~~~~~~~~~~~~~ 369 (423)
T PRK04837 341 HRIGRTGRAGA--SGHSISLACEEYALNLPA 369 (423)
T ss_pred eccccccCCCC--CeeEEEEeCHHHHHHHHH
Confidence 99999999997 899999998776544443
No 31
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.9e-39 Score=392.06 Aligned_cols=327 Identities=17% Similarity=0.208 Sum_probs=239.5
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|.+|+|+|.++++.++.+++ +++. ||||||||++|.+|++..+... .
T Consensus 26 ~~~ptpiQ~~ai~~ll~g~d-vl~~------------------------------ApTGsGKT~af~lpll~~l~~~--~ 72 (629)
T PRK11634 26 YEKPSPIQAECIPHLLNGRD-VLGM------------------------------AQTGSGKTAAFSLPLLHNLDPE--L 72 (629)
T ss_pred CCCCCHHHHHHHHHHHcCCC-EEEE------------------------------cCCCCcHHHHHHHHHHHHhhhc--c
Confidence 99999999999999988754 5555 9999999999999999887652 2
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--h-cccCcEEEEcHhhHHHHHHhhhccccccee
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK--L-LEKGQIIISTPEKWDALSRRWKQRKYVQQV 575 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~-~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v 575 (1254)
+.+++||++||++||.|+++.+.+......++.+..++|+.+.+.. . ...++|+|+||+++..++.+. ...++++
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~--~l~l~~l 150 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG--TLDLSKL 150 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--Ccchhhc
Confidence 2358999999999999999998875554457888888888764422 2 245799999999997766552 3358899
Q ss_pred eEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcc-cccEEE
Q 000849 576 SLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRP-VPLEIQ 653 (1254)
Q Consensus 576 ~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~-v~l~~~ 653 (1254)
++||+||||.+.+. | +...+..+...++...|++++|||+|+. ..+...+...+..+. ....... ..+...
T Consensus 151 ~~lVlDEAd~ml~~-g-----f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~-i~~~~~~~~~i~q~ 223 (629)
T PRK11634 151 SGLVLDEADEMLRM-G-----FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVR-IQSSVTTRPDISQS 223 (629)
T ss_pred eEEEeccHHHHhhc-c-----cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEE-ccCccccCCceEEE
Confidence 99999999988852 2 1222333444457789999999999864 444443333322221 1111111 112222
Q ss_pred EeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhc
Q 000849 654 IQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSII 733 (1254)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 733 (1254)
+...... .... ....+... ....++||||+|+..+..++..|...
T Consensus 224 ~~~v~~~---~k~~-----~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~~-------------------------- 268 (629)
T PRK11634 224 YWTVWGM---RKNE-----ALVRFLEA-EDFDAAIIFVRTKNATLEVAEALERN-------------------------- 268 (629)
T ss_pred EEEechh---hHHH-----HHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHhC--------------------------
Confidence 2111111 1111 11122222 34578999999999999999877431
Q ss_pred ChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccCCC
Q 000849 734 QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRP 811 (1254)
Q Consensus 734 ~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~ 811 (1254)
++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+| .++|+++.|.+..+|+||+|||||.
T Consensus 269 ---------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRa 339 (629)
T PRK11634 269 ---------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA 339 (629)
T ss_pred ---------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCC
Confidence 45688899999999999999999999999999999999999999 5666999999999999999999999
Q ss_pred CCCCCceEEEEccCCcHHHHHH
Q 000849 812 LLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 812 g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
|. .|.|++++.+.+...++.
T Consensus 340 Gr--~G~ai~~v~~~e~~~l~~ 359 (629)
T PRK11634 340 GR--AGRALLFVENRERRLLRN 359 (629)
T ss_pred CC--cceEEEEechHHHHHHHH
Confidence 96 899999998776555443
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.1e-39 Score=385.45 Aligned_cols=343 Identities=20% Similarity=0.217 Sum_probs=249.4
Q ss_pred CCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccC
Q 000849 397 LDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPT 476 (1254)
Q Consensus 397 l~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apT 476 (1254)
+++++.....+...+ |..|+++|.++++.++++++ ++++ |||
T Consensus 6 l~l~~~l~~~l~~~g-------~~~p~~iQ~~ai~~~~~g~d-~l~~------------------------------apT 47 (434)
T PRK11192 6 LELDESLLEALQDKG-------YTRPTAIQAEAIPPALDGRD-VLGS------------------------------APT 47 (434)
T ss_pred cCCCHHHHHHHHHCC-------CCCCCHHHHHHHHHHhCCCC-EEEE------------------------------CCC
Confidence 444544444443333 89999999999999998754 6666 999
Q ss_pred CCchHHHHHHHHHHHHHhhc--CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--h-cccCcE
Q 000849 477 GSGKTICAEFAILRNHQRAS--ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK--L-LEKGQI 551 (1254)
Q Consensus 477 GsGKT~~~~l~il~~l~~~~--~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~-~~~~~I 551 (1254)
|+|||++|++|+++.+.... ..+.++++|++||++||.|+++.+.... ...++++..++|+...... . ...++|
T Consensus 48 GsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~-~~~~~~v~~~~gg~~~~~~~~~l~~~~~I 126 (434)
T PRK11192 48 GTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA-KHTHLDIATITGGVAYMNHAEVFSENQDI 126 (434)
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH-ccCCcEEEEEECCCCHHHHHHHhcCCCCE
Confidence 99999999999999886521 2223589999999999999999988744 4458999999998765432 2 245699
Q ss_pred EEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC--hHHHH
Q 000849 552 IISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN--AKDLG 628 (1254)
Q Consensus 552 iv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~--~~~l~ 628 (1254)
+|+||++|..++... ...+.++++||+||||++.+ ..+..++.+. ...+...|++++|||++. ..++.
T Consensus 127 lV~Tp~rl~~~~~~~--~~~~~~v~~lViDEah~~l~~~~~~~~~~i~-------~~~~~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 127 VVATPGRLLQYIKEE--NFDCRAVETLILDEADRMLDMGFAQDIETIA-------AETRWRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred EEEChHHHHHHHHcC--CcCcccCCEEEEECHHHHhCCCcHHHHHHHH-------HhCccccEEEEEEeecCHHHHHHHH
Confidence 999999997766552 23478899999999999986 3333433332 233567899999999974 46777
Q ss_pred HhhcCCCCeeEecCCCCcc-cccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHH
Q 000849 629 EWIGASSHGVFNFPPGVRP-VPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIY 707 (1254)
Q Consensus 629 ~~l~~~~~~~~~~~~~~r~-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~ 707 (1254)
.++...+..+. ..+..+. ..+...+...+ ..... ......+.+. ....++||||+++..++.++..|...
T Consensus 198 ~~~~~~~~~i~-~~~~~~~~~~i~~~~~~~~--~~~~k-----~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~ 268 (434)
T PRK11192 198 ERLLNDPVEVE-AEPSRRERKKIHQWYYRAD--DLEHK-----TALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLRKA 268 (434)
T ss_pred HHHccCCEEEE-ecCCcccccCceEEEEEeC--CHHHH-----HHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHHhC
Confidence 77765543322 2222111 11222211111 11111 1112222222 35689999999999999999877431
Q ss_pred hhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-
Q 000849 708 SCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT- 786 (1254)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip- 786 (1254)
+..+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|
T Consensus 269 -----------------------------------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~ 313 (434)
T PRK11192 269 -----------------------------------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDD 313 (434)
T ss_pred -----------------------------------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCC
Confidence 44688999999999999999999999999999999999999999
Q ss_pred -ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849 787 -AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 787 -~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
.++|+++.|.+...|+||+||+||.|. .|.++++++..+...+.+
T Consensus 314 v~~VI~~d~p~s~~~yiqr~GR~gR~g~--~g~ai~l~~~~d~~~~~~ 359 (434)
T PRK11192 314 VSHVINFDMPRSADTYLHRIGRTGRAGR--KGTAISLVEAHDHLLLGK 359 (434)
T ss_pred CCEEEEECCCCCHHHHhhcccccccCCC--CceEEEEecHHHHHHHHH
Confidence 566699999999999999999999986 799999988766554443
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-38 Score=385.73 Aligned_cols=324 Identities=19% Similarity=0.241 Sum_probs=235.5
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|..++++|.++++.+++|++ +++. ||||||||++|++|++..+......
T Consensus 107 ~~~~~~iQ~~ai~~~~~G~d-vi~~------------------------------apTGSGKTlay~lpil~~l~~~~~~ 155 (475)
T PRK01297 107 FPYCTPIQAQVLGYTLAGHD-AIGR------------------------------AQTGTGKTAAFLISIINQLLQTPPP 155 (475)
T ss_pred CCCCCHHHHHHHHHHhCCCC-EEEE------------------------------CCCCChHHHHHHHHHHHHHHhcCcc
Confidence 88999999999999988754 5555 9999999999999999988763211
Q ss_pred -----CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch--hhc--ccCcEEEEcHhhHHHHHHhhhcc
Q 000849 499 -----GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQR 569 (1254)
Q Consensus 499 -----~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~--~~~~Iiv~Tpe~l~~l~~~~~~~ 569 (1254)
+.++++|++||++||.|+++.++... ...++++..++|+...+. +.+ ..++|+|+||++|..+..++.
T Consensus 156 ~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~-~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~-- 232 (475)
T PRK01297 156 KERYMGEPRALIIAPTRELVVQIAKDAAALT-KYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE-- 232 (475)
T ss_pred cccccCCceEEEEeCcHHHHHHHHHHHHHhh-ccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--
Confidence 13589999999999999999998744 445889998888765432 222 346999999999977766643
Q ss_pred cccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcC--CCcEEEEecCCCCC-hHHHHHhhcCCCCeeEecCC-CC
Q 000849 570 KYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVE--NKIRIVALSTSLAN-AKDLGEWIGASSHGVFNFPP-GV 645 (1254)
Q Consensus 570 ~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~--~~~rii~lSATl~~-~~~l~~~l~~~~~~~~~~~~-~~ 645 (1254)
..++++++|||||+|.+.+. + +..+++.+....+ ...|++++|||+++ ..+++..+...+. .+.+.. ..
T Consensus 233 ~~l~~l~~lViDEah~l~~~-~-----~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~~~ 305 (475)
T PRK01297 233 VHLDMVEVMVLDEADRMLDM-G-----FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPENV 305 (475)
T ss_pred cccccCceEEechHHHHHhc-c-----cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccCcC
Confidence 45889999999999998852 1 2233333333332 35799999999863 3445544433332 222211 11
Q ss_pred cccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhc
Q 000849 646 RPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725 (1254)
Q Consensus 646 r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~ 725 (1254)
....+..++......... ..+.. +... ....++||||++++.++.++..|...
T Consensus 306 ~~~~~~~~~~~~~~~~k~-------~~l~~-ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~------------------ 358 (475)
T PRK01297 306 ASDTVEQHVYAVAGSDKY-------KLLYN-LVTQ-NPWERVMVFANRKDEVRRIEERLVKD------------------ 358 (475)
T ss_pred CCCcccEEEEEecchhHH-------HHHHH-HHHh-cCCCeEEEEeCCHHHHHHHHHHHHHc------------------
Confidence 111222333222211111 11111 2222 34569999999999999998766321
Q ss_pred hhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHH
Q 000849 726 VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQ 803 (1254)
Q Consensus 726 l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Q 803 (1254)
+..+..+||++++++|..+++.|++|+++|||||+++++|||+| ..+|+++.|.+..+|+|
T Consensus 359 -----------------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Q 421 (475)
T PRK01297 359 -----------------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVH 421 (475)
T ss_pred -----------------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHH
Confidence 34678899999999999999999999999999999999999999 56669999999999999
Q ss_pred hhcccCCCCCCCCceEEEEccCCcHH
Q 000849 804 MMGHAGRPLLDNSEKCVILCHAPHKE 829 (1254)
Q Consensus 804 r~GRaGR~g~d~~G~~iil~~~~~~~ 829 (1254)
|+|||||.|. .|.++++..+++..
T Consensus 422 r~GRaGR~g~--~g~~i~~~~~~d~~ 445 (475)
T PRK01297 422 RIGRTGRAGA--SGVSISFAGEDDAF 445 (475)
T ss_pred hhCccCCCCC--CceEEEEecHHHHH
Confidence 9999999997 79999998876543
No 34
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=346.31 Aligned_cols=336 Identities=16% Similarity=0.171 Sum_probs=250.1
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhc--
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRAS-- 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~-- 496 (1254)
|..+||+|..++|.++.+.| |++.||||||||++|++|+++.+....
T Consensus 26 F~~mTpVQa~tIPlll~~KD-------------------------------VvveavTGSGKTlAFllP~le~i~rr~~~ 74 (567)
T KOG0345|consen 26 FEKMTPVQAATIPLLLKNKD-------------------------------VVVEAVTGSGKTLAFLLPMLEIIYRREAK 74 (567)
T ss_pred CcccCHHHHhhhHHHhcCCc-------------------------------eEEEcCCCCCchhhHHHHHHHHHHhhccC
Confidence 99999999999999988766 444599999999999999999984421
Q ss_pred -CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch--h--hcccCcEEEEcHhhHHHHHHhhhcccc
Q 000849 497 -ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL--K--LLEKGQIIISTPEKWDALSRRWKQRKY 571 (1254)
Q Consensus 497 -~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~--~~~~~~Iiv~Tpe~l~~l~~~~~~~~~ 571 (1254)
+.+.+-+++|+|||+||.|+.+..........++++..++|+..... . .-+.++|+|+|||+|..++++......
T Consensus 75 ~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~ 154 (567)
T KOG0345|consen 75 TPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLS 154 (567)
T ss_pred CCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcc
Confidence 22235789999999999999998887666667889999999866432 2 224679999999999999888555555
Q ss_pred cceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCC--Cccc
Q 000849 572 VQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPG--VRPV 648 (1254)
Q Consensus 572 l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~--~r~v 648 (1254)
+.++.++|+||||++.+.. +-..+..+.+.+++..|.=++|||.... +++...--.++..+..-..+ .-|.
T Consensus 155 ~rsLe~LVLDEADrLldmg------Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS 228 (567)
T KOG0345|consen 155 FRSLEILVLDEADRLLDMG------FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPS 228 (567)
T ss_pred ccccceEEecchHhHhccc------HHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCch
Confidence 7799999999999999632 3455666666778899999999998644 44443322222111111111 1232
Q ss_pred ccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhh
Q 000849 649 PLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728 (1254)
Q Consensus 649 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~ 728 (1254)
.+...+.......... .+...+.. ...+++|||.+|...++..+..+....
T Consensus 229 ~L~~~Y~v~~a~eK~~-------~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l-------------------- 279 (567)
T KOG0345|consen 229 SLALEYLVCEADEKLS-------QLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLL-------------------- 279 (567)
T ss_pred hhcceeeEecHHHHHH-------HHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHh--------------------
Confidence 2333333222211111 11222222 457899999999999988876654321
Q ss_pred HHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhc
Q 000849 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMG 806 (1254)
Q Consensus 729 ~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~G 806 (1254)
....+..+||.|++..|..+++.|++..-.+|+||+++++|+|+| ..+|+++.|.+...|.||+|
T Consensus 280 -------------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~G 346 (567)
T KOG0345|consen 280 -------------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCG 346 (567)
T ss_pred -------------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcc
Confidence 134688899999999999999999998999999999999999999 56779999999999999999
Q ss_pred ccCCCCCCCCceEEEEccCCcHHHHHHhhc
Q 000849 807 HAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836 (1254)
Q Consensus 807 RaGR~g~d~~G~~iil~~~~~~~~~~~~l~ 836 (1254)
|+||.|. .|.+++|..+. .+.|..|+.
T Consensus 347 RTaR~gr--~G~Aivfl~p~-E~aYveFl~ 373 (567)
T KOG0345|consen 347 RTARAGR--EGNAIVFLNPR-EEAYVEFLR 373 (567)
T ss_pred hhhhccC--ccceEEEeccc-HHHHHHHHH
Confidence 9999997 89999999884 455666665
No 35
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-39 Score=337.87 Aligned_cols=348 Identities=16% Similarity=0.173 Sum_probs=259.1
Q ss_pred CCCCCCCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeee
Q 000849 392 PPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVL 471 (1254)
Q Consensus 392 ~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~vi 471 (1254)
.+.+.|++.+-.+..+...+ .+.++|+|..|+|.++.|++ ++-|
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~-------i~~pTpiQ~~cIpkILeGrd-cig~---------------------------- 50 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALG-------IKKPTPIQQACIPKILEGRD-CIGC---------------------------- 50 (442)
T ss_pred CchhhcCccHHHHHHHHHhc-------CCCCCchHhhhhHHHhcccc-cccc----------------------------
Confidence 34455677666665554433 88999999999999999977 7777
Q ss_pred eeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecccccc---chhhccc
Q 000849 472 QLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM---DLKLLEK 548 (1254)
Q Consensus 472 v~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~ 548 (1254)
|.||||||.+|.+|+++.|..+..+- -+++++|||+||.|+.+.|.. +++..++++..+.|+++. +.....+
T Consensus 51 --AkTGsGKT~AFaLPil~rLsedP~gi--FalvlTPTrELA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~r 125 (442)
T KOG0340|consen 51 --AKTGSGKTAAFALPILNRLSEDPYGI--FALVLTPTRELALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDR 125 (442)
T ss_pred --cccCCCcchhhhHHHHHhhccCCCcc--eEEEecchHHHHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhcccC
Confidence 99999999999999999999843333 899999999999999999985 788889999999998763 2334467
Q ss_pred CcEEEEcHhhHHHHHHhhhcc--cccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChH
Q 000849 549 GQIIISTPEKWDALSRRWKQR--KYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAK 625 (1254)
Q Consensus 549 ~~Iiv~Tpe~l~~l~~~~~~~--~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~ 625 (1254)
++++|+|||++..+++..... ..++++.++|+|||+.+.+ ..... +..+.+..+.+.|.+++|||+.+.
T Consensus 126 PHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~-------L~~i~e~lP~~RQtLlfSATitd~- 197 (442)
T KOG0340|consen 126 PHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDI-------LEGIEECLPKPRQTLLFSATITDT- 197 (442)
T ss_pred CCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhH-------HhhhhccCCCccceEEEEeehhhH-
Confidence 899999999997777764222 2588999999999999986 33223 333333446778999999999654
Q ss_pred HHHHhhcCCCCe-eEecCCCCccc----ccEEEEeeccCCChHHHHHhhCHHHHHHHHhhh-hcCCCeEEEecChhhHHH
Q 000849 626 DLGEWIGASSHG-VFNFPPGVRPV----PLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVFVPSRKYARL 699 (1254)
Q Consensus 626 ~l~~~l~~~~~~-~~~~~~~~r~v----~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~lVF~~s~~~~~~ 699 (1254)
+...++.+... ...+-.....+ .+...+.-.+.... .-.++..+...- ...+.++||+++..+|+.
T Consensus 198 -i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk-------daYLv~~Lr~~~~~~~~simIFvnttr~cQ~ 269 (442)
T KOG0340|consen 198 -IKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK-------DAYLVHLLRDFENKENGSIMIFVNTTRECQL 269 (442)
T ss_pred -HHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh-------HHHHHHHHhhhhhccCceEEEEeehhHHHHH
Confidence 44555544321 11111111111 11111111111100 111233333331 248899999999999999
Q ss_pred HHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCccc
Q 000849 700 TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779 (1254)
Q Consensus 700 la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l 779 (1254)
++..|.. +...+..+||.|++.+|...+.+|+++.++|||||+++
T Consensus 270 l~~~l~~-----------------------------------le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVA 314 (442)
T KOG0340|consen 270 LSMTLKN-----------------------------------LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVA 314 (442)
T ss_pred HHHHHhh-----------------------------------hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechh
Confidence 9876632 35678999999999999999999999999999999999
Q ss_pred ccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849 780 CWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 780 ~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
++|+|+| +.+| +++.|.++.+|+||+||+.|+|. .|.++.++++.+.+....
T Consensus 315 sRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR--~G~aiSivt~rDv~l~~a 368 (442)
T KOG0340|consen 315 SRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGR--KGMAISIVTQRDVELLQA 368 (442)
T ss_pred hcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccC--CcceEEEechhhHHHHHH
Confidence 9999999 5555 99999999999999999999998 899999998777665544
No 36
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-38 Score=348.77 Aligned_cols=336 Identities=16% Similarity=0.169 Sum_probs=252.5
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhc--
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRAS-- 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~-- 496 (1254)
|.++|++|+.+++.++.|.+ +++. |-||+|||++|++|+++.+.+..
T Consensus 102 F~~MT~VQ~~ti~pll~gkD-vl~~------------------------------AKTGtGKTlAFLiPaie~l~k~~~~ 150 (543)
T KOG0342|consen 102 FETMTPVQQKTIPPLLEGKD-VLAA------------------------------AKTGTGKTLAFLLPAIELLRKLKFK 150 (543)
T ss_pred ccchhHHHHhhcCccCCCcc-ceee------------------------------eccCCCceeeehhHHHHHHHhcccC
Confidence 99999999999999999874 7777 99999999999999999887752
Q ss_pred CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch---hhcccCcEEEEcHhhHHHHHHhhhcccccc
Q 000849 497 ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQ 573 (1254)
Q Consensus 497 ~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~ 573 (1254)
+..+..+++++|||+||.|++...++.+....++.+..+.|+.+... +....++|+|+|||+|.+++.+... ....
T Consensus 151 ~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r 229 (543)
T KOG0342|consen 151 PRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFR 229 (543)
T ss_pred CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhh
Confidence 23356899999999999999999998776655888999999887542 2334669999999999888887553 4567
Q ss_pred eeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccccEE
Q 000849 574 QVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVPLEI 652 (1254)
Q Consensus 574 ~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~l~~ 652 (1254)
+++++|+||||++.+ .| +-.-+..+.+.++...|.+++|||.+.. ++++.-.-.......+......+...+-
T Consensus 230 ~~k~lvlDEADrlLd-~G-----F~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~ 303 (543)
T KOG0342|consen 230 NLKCLVLDEADRLLD-IG-----FEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHER 303 (543)
T ss_pred ccceeEeecchhhhh-cc-----cHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhc
Confidence 789999999999996 22 1223344444457899999999999743 6666543222222333333333222211
Q ss_pred EEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhh
Q 000849 653 QIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSI 732 (1254)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 732 (1254)
.-+++-......++ ..++..+.++ ....++||||+|...+...+..|.
T Consensus 304 l~Qgyvv~~~~~~f----~ll~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL~--------------------------- 351 (543)
T KOG0342|consen 304 LEQGYVVAPSDSRF----SLLYTFLKKN-IKRYKIIVFFSTCMSVKFHAELLN--------------------------- 351 (543)
T ss_pred ccceEEeccccchH----HHHHHHHHHh-cCCceEEEEechhhHHHHHHHHHh---------------------------
Confidence 11111111111111 1244555555 444899999999999988876553
Q ss_pred cChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccCC
Q 000849 733 IQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGR 810 (1254)
Q Consensus 733 ~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR 810 (1254)
.+...|..+||++++..|..+...|++.+.-|||||++++||+|+| ..+|+++.|-++.+|+||+||+||
T Consensus 352 --------~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR 423 (543)
T KOG0342|consen 352 --------YIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAR 423 (543)
T ss_pred --------hcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccc
Confidence 1245688899999999999999999999999999999999999999 466699999999999999999999
Q ss_pred CCCCCCceEEEEccCCcHHHHHHh
Q 000849 811 PLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 811 ~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
.|. .|.++++..+.+..+...+
T Consensus 424 ~gk--~G~alL~l~p~El~Flr~L 445 (543)
T KOG0342|consen 424 EGK--EGKALLLLAPWELGFLRYL 445 (543)
T ss_pred cCC--CceEEEEeChhHHHHHHHH
Confidence 776 8999999988776665543
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.5e-38 Score=380.02 Aligned_cols=331 Identities=20% Similarity=0.308 Sum_probs=246.1
Q ss_pred HHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHH
Q 000849 412 YEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRN 491 (1254)
Q Consensus 412 ~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~ 491 (1254)
+++.|. |+.|+|+|.++++.++++++ +++. +|||||||++|++|++.
T Consensus 3 l~~~~g-~~~~r~~Q~~ai~~~l~g~d-vlv~------------------------------apTGsGKTl~y~lp~l~- 49 (470)
T TIGR00614 3 LKTVFG-LSSFRPVQLEVINAVLLGRD-CFVV------------------------------MPTGGGKSLCYQLPALC- 49 (470)
T ss_pred hHhhcC-CCCCCHHHHHHHHHHHcCCC-EEEE------------------------------cCCCCcHhHHHHHHHHH-
Confidence 455665 99999999999999998764 5555 99999999999999873
Q ss_pred HHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-----h--cccCcEEEEcHhhHHHHHH
Q 000849 492 HQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-----L--LEKGQIIISTPEKWDALSR 564 (1254)
Q Consensus 492 l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~--~~~~~Iiv~Tpe~l~~l~~ 564 (1254)
.++ .++|++|+++|+.|+++.+.. .|+.+..+.|+...... . ....+|+++|||++....+
T Consensus 50 -----~~~--~~lVi~P~~~L~~dq~~~l~~-----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~ 117 (470)
T TIGR00614 50 -----SDG--ITLVISPLISLMEDQVLQLKA-----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNR 117 (470)
T ss_pred -----cCC--cEEEEecHHHHHHHHHHHHHH-----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchh
Confidence 244 799999999999999988875 37788888877654311 1 1246999999999732211
Q ss_pred hhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCCCCeeEecC
Q 000849 565 RWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGASSHGVFNFP 642 (1254)
Q Consensus 565 ~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~~~~~~~~~ 642 (1254)
.........+++++||||||++. ++|..+...+.++..+.... ++.+++++|||+++. .++.++++.....++...
T Consensus 118 ~~~~l~~~~~i~~iViDEaH~i~-~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s 195 (470)
T TIGR00614 118 LLQTLEERKGITLIAVDEAHCIS-QWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS 195 (470)
T ss_pred HHHHHHhcCCcCEEEEeCCcccC-ccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC
Confidence 11111136789999999999998 56666666666665554443 578899999999864 678888877654443322
Q ss_pred CCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccC
Q 000849 643 PGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722 (1254)
Q Consensus 643 ~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~ 722 (1254)
. .+| .+...+..... . ....+...+.+. .+++++||||+|++.|+.++..|...
T Consensus 196 ~-~r~-nl~~~v~~~~~-~-------~~~~l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~~--------------- 249 (470)
T TIGR00614 196 F-DRP-NLYYEVRRKTP-K-------ILEDLLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQNL--------------- 249 (470)
T ss_pred C-CCC-CcEEEEEeCCc-c-------HHHHHHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHhc---------------
Confidence 1 222 22222221111 1 011122223222 45677899999999999999877431
Q ss_pred hhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHH
Q 000849 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTT 800 (1254)
Q Consensus 723 ~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~ 800 (1254)
+..+..+||+|++++|..+++.|++|+++|||||+++++|||+| ..+|+++.|.|..+
T Consensus 250 --------------------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 250 --------------------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred --------------------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 45688999999999999999999999999999999999999999 45669999999999
Q ss_pred HHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcC
Q 000849 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYE 837 (1254)
Q Consensus 801 ~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~ 837 (1254)
|+||+|||||.|. .|.|++++...+...+++++.+
T Consensus 310 y~Qr~GRaGR~G~--~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 310 YYQESGRAGRDGL--PSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred HHhhhcCcCCCCC--CceEEEEechhHHHHHHHHHhc
Confidence 9999999999987 8999999999888888777653
No 38
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.5e-38 Score=375.56 Aligned_cols=335 Identities=14% Similarity=0.198 Sum_probs=238.3
Q ss_pred HHHHhcc-CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHH
Q 000849 412 YEALYQN-YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILR 490 (1254)
Q Consensus 412 ~~~~~~~-~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~ 490 (1254)
++.++.. |..|+|+|.++++.++++.+ ++++ ||||||||++|++|+++
T Consensus 40 ~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~------------------------------apTGsGKT~~~~l~~l~ 88 (401)
T PTZ00424 40 LRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQ------------------------------AQSGTGKTATFVIAALQ 88 (401)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEE------------------------------CCCCChHHHHHHHHHHH
Confidence 4444443 88999999999999998765 5555 99999999999999998
Q ss_pred HHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch--hh-cccCcEEEEcHhhHHHHHHhhh
Q 000849 491 NHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL--KL-LEKGQIIISTPEKWDALSRRWK 567 (1254)
Q Consensus 491 ~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~-~~~~~Iiv~Tpe~l~~l~~~~~ 567 (1254)
.+.....+ .+++|++|+++|+.|+.+.+... +...+..+..+.|+..... .. ...++|+|+||+++..++++.
T Consensus 89 ~~~~~~~~--~~~lil~Pt~~L~~Q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~- 164 (401)
T PTZ00424 89 LIDYDLNA--CQALILAPTRELAQQIQKVVLAL-GDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR- 164 (401)
T ss_pred HhcCCCCC--ceEEEECCCHHHHHHHHHHHHHH-hhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-
Confidence 87652233 38999999999999999888764 4344777777777764321 12 234699999999997666542
Q ss_pred cccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHH-HhhcCCCCeeEecCCCC
Q 000849 568 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLG-EWIGASSHGVFNFPPGV 645 (1254)
Q Consensus 568 ~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~-~~l~~~~~~~~~~~~~~ 645 (1254)
...+++++++|+||+|++.+ ++ +. ..+..+....+.+.|++++|||+++. .++. .++.. +..+.......
T Consensus 165 -~~~l~~i~lvViDEah~~~~-~~--~~---~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~ 236 (401)
T PTZ00424 165 -HLRVDDLKLFILDEADEMLS-RG--FK---GQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRD-PKRILVKKDEL 236 (401)
T ss_pred -CcccccccEEEEecHHHHHh-cc--hH---HHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCC-CEEEEeCCCCc
Confidence 33588999999999999885 22 11 11222333446789999999999864 2333 33332 22222111111
Q ss_pred cccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhc
Q 000849 646 RPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725 (1254)
Q Consensus 646 r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~ 725 (1254)
....+...+....... ... .....+.+. ....++||||++++.++.++..+...
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~-----~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~------------------ 290 (401)
T PTZ00424 237 TLEGIRQFYVAVEKEE--WKF-----DTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMHER------------------ 290 (401)
T ss_pred ccCCceEEEEecChHH--HHH-----HHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHHC------------------
Confidence 1111122221111110 010 111122222 34578999999999999988766321
Q ss_pred hhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHH
Q 000849 726 VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQ 803 (1254)
Q Consensus 726 l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Q 803 (1254)
+.++..+||+|++++|..+++.|++|+++|||||+++++|+|+| ..+|+++.|.+..+|+|
T Consensus 291 -----------------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~q 353 (401)
T PTZ00424 291 -----------------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIH 353 (401)
T ss_pred -----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEee
Confidence 35689999999999999999999999999999999999999999 45568899999999999
Q ss_pred hhcccCCCCCCCCceEEEEccCCcHHHHHHh
Q 000849 804 MMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 804 r~GRaGR~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
|+|||||.|. .|.|++++++++.+.+.++
T Consensus 354 r~GRagR~g~--~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 354 RIGRSGRFGR--KGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred cccccccCCC--CceEEEEEcHHHHHHHHHH
Confidence 9999999986 8999999998887766654
No 39
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=329.95 Aligned_cols=347 Identities=16% Similarity=0.221 Sum_probs=259.9
Q ss_pred chHHHHhcc-CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHH
Q 000849 410 PSYEALYQN-YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 410 ~~~~~~~~~-~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~i 488 (1254)
.-+..+|.. |+.|.|+|.+++|.++.|++ +++. |..|+|||.+|.+|+
T Consensus 95 ~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaR------------------------------aKNGTGKT~a~~IP~ 143 (459)
T KOG0326|consen 95 ELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILAR------------------------------AKNGTGKTAAYCIPV 143 (459)
T ss_pred HHHHHHHHhccCCCCCccccccceeecchh-hhhh------------------------------ccCCCCCccceechh
Confidence 344555655 99999999999999998865 8888 999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh--c-ccCcEEEEcHhhHHHHHHh
Q 000849 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL--L-EKGQIIISTPEKWDALSRR 565 (1254)
Q Consensus 489 l~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~-~~~~Iiv~Tpe~l~~l~~~ 565 (1254)
++.+... ....++++++|||+||-|+.+.+++ +++.+|++|...+|+++..... + +..+++|+||++..++..+
T Consensus 144 Lekid~~--~~~IQ~~ilVPtrelALQtSqvc~~-lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K 220 (459)
T KOG0326|consen 144 LEKIDPK--KNVIQAIILVPTRELALQTSQVCKE-LSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK 220 (459)
T ss_pred hhhcCcc--ccceeEEEEeecchhhHHHHHHHHH-HhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc
Confidence 9988762 3346899999999999998888775 6667799999999998765432 2 3449999999999888877
Q ss_pred hhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HH-HHHhhcCCCCeeEecC
Q 000849 566 WKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KD-LGEWIGASSHGVFNFP 642 (1254)
Q Consensus 566 ~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~-l~~~l~~~~~~~~~~~ 642 (1254)
.. ..+++..++|+|||+.+.+ ++++.++.++.. +++..|+++.|||.|.. .. +.+++..+ ..++.-
T Consensus 221 gV--a~ls~c~~lV~DEADKlLs~~F~~~~e~li~~-------lP~~rQillySATFP~tVk~Fm~~~l~kP--y~INLM 289 (459)
T KOG0326|consen 221 GV--ADLSDCVILVMDEADKLLSVDFQPIVEKLISF-------LPKERQILLYSATFPLTVKGFMDRHLKKP--YEINLM 289 (459)
T ss_pred cc--ccchhceEEEechhhhhhchhhhhHHHHHHHh-------CCccceeeEEecccchhHHHHHHHhccCc--ceeehh
Confidence 43 3589999999999999997 777776665554 37899999999999854 22 23333322 222322
Q ss_pred CCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccC
Q 000849 643 PGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722 (1254)
Q Consensus 643 ~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~ 722 (1254)
.+..+.-+..++..+..... . .+.+.+... -.-.+.||||||...++.+|+.+.+
T Consensus 290 ~eLtl~GvtQyYafV~e~qK---v-----hCLntLfsk-LqINQsIIFCNS~~rVELLAkKITe---------------- 344 (459)
T KOG0326|consen 290 EELTLKGVTQYYAFVEERQK---V-----HCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITE---------------- 344 (459)
T ss_pred hhhhhcchhhheeeechhhh---h-----hhHHHHHHH-hcccceEEEeccchHhHHHHHHHHh----------------
Confidence 22222222232222221111 1 122222222 2456899999999999999987743
Q ss_pred hhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-cccccCCHHH
Q 000849 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTT 800 (1254)
Q Consensus 723 ~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~ 800 (1254)
+++.+.+.|+.|.+++|++|+..|++|.++.||||+.+.+|||++ +++| +++.|.+.++
T Consensus 345 -------------------lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEt 405 (459)
T KOG0326|consen 345 -------------------LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAET 405 (459)
T ss_pred -------------------ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHH
Confidence 377889999999999999999999999999999999999999999 4555 9999999999
Q ss_pred HHHhhcccCCCCCCCCceEEEEccCCcHHHHHHh----hcCCcccccccch
Q 000849 801 LLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF----LYEAFPVESHLHH 847 (1254)
Q Consensus 801 ~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~----l~~~~pies~l~~ 847 (1254)
|+||+||+||.|. .|.|+-+.+-+++....+. =.+-.|+.+.+..
T Consensus 406 YLHRIGRsGRFGh--lGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 406 YLHRIGRSGRFGH--LGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred HHHHccCCccCCC--cceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 9999999999997 9999988776654443332 2244555555543
No 40
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-38 Score=347.64 Aligned_cols=380 Identities=17% Similarity=0.152 Sum_probs=261.6
Q ss_pred CCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccC
Q 000849 397 LDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPT 476 (1254)
Q Consensus 397 l~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apT 476 (1254)
++++|..++.| +..+. +..||.+|.+++|.+++++| ++|. |+|
T Consensus 141 LGL~~~lv~~L-----~~~m~-i~~pTsVQkq~IP~lL~grD-~lV~------------------------------aQT 183 (708)
T KOG0348|consen 141 LGLHPHLVSHL-----NTKMK-ISAPTSVQKQAIPVLLEGRD-ALVR------------------------------AQT 183 (708)
T ss_pred cCCCHHHHHHH-----HHHhc-cCccchHhhcchhhhhcCcc-eEEE------------------------------cCC
Confidence 56666665543 34444 89999999999999999877 7777 999
Q ss_pred CCchHHHHHHHHHHHHHhhc----CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccc---hhhcccC
Q 000849 477 GSGKTICAEFAILRNHQRAS----ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD---LKLLEKG 549 (1254)
Q Consensus 477 GsGKT~~~~l~il~~l~~~~----~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~---~~~~~~~ 549 (1254)
|||||++|++|+++.+.... ...++-++||+|||+||.|+|+.+.+.+.+..-+..+.+.|+.... .+...+.
T Consensus 184 GSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGi 263 (708)
T KOG0348|consen 184 GSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGI 263 (708)
T ss_pred CCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCc
Confidence 99999999999999987642 2235689999999999999999999988877666667777775532 2334556
Q ss_pred cEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhh------cCCCcEEEEecCCCC
Q 000849 550 QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQ------VENKIRIVALSTSLA 622 (1254)
Q Consensus 550 ~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~------~~~~~rii~lSATl~ 622 (1254)
+|+|+|||+|.+++.+.. ...++++.++|+||+|++.+ .++..+..++..+..+... ++...+-+++|||+.
T Consensus 264 NILIgTPGRLvDHLknT~-~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt 342 (708)
T KOG0348|consen 264 NILIGTPGRLVDHLKNTK-SIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLT 342 (708)
T ss_pred eEEEcCchHHHHHHhccc-hheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhH
Confidence 999999999988777643 33578899999999999998 6777777777776432111 223467899999997
Q ss_pred Ch-HHHHHhhcCCCCeeEecCC--------------------------CCcccccEEEEeeccCCChHHHHHhhCHHHHH
Q 000849 623 NA-KDLGEWIGASSHGVFNFPP--------------------------GVRPVPLEIQIQGVDITNFEARMKAMTKPTYT 675 (1254)
Q Consensus 623 ~~-~~l~~~l~~~~~~~~~~~~--------------------------~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1254)
+. .++++.--.++ ..+..+. ..-|..+..++..++..- ++..+.--+.+
T Consensus 343 d~V~rLa~~sLkDp-v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL---RLV~Laa~L~~ 418 (708)
T KOG0348|consen 343 DGVNRLADLSLKDP-VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL---RLVALAALLLN 418 (708)
T ss_pred HHHHHHhhccccCc-eeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCch---hHHHHHHHHHH
Confidence 54 33333211111 1111000 001111112221111111 11111111111
Q ss_pred HHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCH
Q 000849 676 AIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNK 755 (1254)
Q Consensus 676 ~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~ 755 (1254)
..+. ....++|||+++.+.++.-+..+............ .....+. ...-.++..+.-+||+|++
T Consensus 419 -~~k~-~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s--~~~~s~g-----------~~~l~~~~k~~rLHGsm~Q 483 (708)
T KOG0348|consen 419 -KVKF-EEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSS--GAPDSEG-----------LPPLFMDLKFYRLHGSMEQ 483 (708)
T ss_pred -Hhhh-hhhceeEEEEechhHHHHHHHHHHhhhhccccccc--CCcccCC-----------ChhhhhcceEEEecCchhH
Confidence 1122 44558999999999998887777654433110000 0000011 1111235668889999999
Q ss_pred HHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849 756 SDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 756 ~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
++|..+++.|....-.||+||+++++|+|+| ..+|.|+.|.+.++|+||+||+.|.|. .|.+++|..+.+.+ |.+
T Consensus 484 eeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~--kG~alLfL~P~Eae-y~~ 560 (708)
T KOG0348|consen 484 EERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGE--KGEALLFLLPSEAE-YVN 560 (708)
T ss_pred HHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccC--CCceEEEecccHHH-HHH
Confidence 9999999999999889999999999999999 566699999999999999999999997 89999999998888 444
Q ss_pred hhc
Q 000849 834 FLY 836 (1254)
Q Consensus 834 ~l~ 836 (1254)
++.
T Consensus 561 ~l~ 563 (708)
T KOG0348|consen 561 YLK 563 (708)
T ss_pred HHH
Confidence 544
No 41
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.9e-37 Score=381.46 Aligned_cols=412 Identities=17% Similarity=0.146 Sum_probs=283.1
Q ss_pred hHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEE
Q 000849 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534 (1254)
Q Consensus 455 ~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~ 534 (1254)
..-.++++.|..+.+++++||||||||+++.+++++.... ++ +++|++|+|++|.|+++++.+.++...|..|++
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~--~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GG--KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CC--eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 3456788888899999999999999999999999976532 34 899999999999999999988887666777776
Q ss_pred eccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEeccccc-ccC-CCccHHHHHHHHHHHHHhhcCCCc
Q 000849 535 LTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGG-QGGPVLEVIVARMRYIASQVENKI 612 (1254)
Q Consensus 535 ~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~-l~~-~~g~~~e~~~~~l~~~~~~~~~~~ 612 (1254)
..+... ..-.+++|+|+||+.+..++.. +..++++++|||||+|. ..+ +. .+..++.+....+.+.
T Consensus 80 ~vr~~~---~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl------~L~ll~~i~~~lr~dl 147 (819)
T TIGR01970 80 RVRGEN---KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADL------GLALALDVQSSLREDL 147 (819)
T ss_pred EEcccc---ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccch------HHHHHHHHHHhcCCCc
Confidence 554322 1223579999999999655543 45799999999999994 332 22 2233333333346789
Q ss_pred EEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhh-hcCCCeEEEe
Q 000849 613 RIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVFV 691 (1254)
Q Consensus 613 rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~lVF~ 691 (1254)
|+|+||||++ .+.+.+|++..+ ++... .+..|+++.+......+ .+.. .....+...+ ...+++|||+
T Consensus 148 qlIlmSATl~-~~~l~~~l~~~~--vI~~~--gr~~pVe~~y~~~~~~~---~~~~---~v~~~l~~~l~~~~g~iLVFl 216 (819)
T TIGR01970 148 KILAMSATLD-GERLSSLLPDAP--VVESE--GRSFPVEIRYLPLRGDQ---RLED---AVSRAVEHALASETGSILVFL 216 (819)
T ss_pred eEEEEeCCCC-HHHHHHHcCCCc--EEEec--CcceeeeeEEeecchhh---hHHH---HHHHHHHHHHHhcCCcEEEEE
Confidence 9999999995 455788886433 23322 23344454443322111 1100 0111121111 2468899999
Q ss_pred cChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCce
Q 000849 692 PSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIK 771 (1254)
Q Consensus 692 ~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~ 771 (1254)
+++++++.++..|.+... .+..+..+||+|++++|..+++.|++|..+
T Consensus 217 pg~~eI~~l~~~L~~~~~--------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rk 264 (819)
T TIGR01970 217 PGQAEIRRVQEQLAERLD--------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRK 264 (819)
T ss_pred CCHHHHHHHHHHHHhhcC--------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeE
Confidence 999999999987754211 034588899999999999999999999999
Q ss_pred EEEeCcccccccCCc-c-eeecccc------------------cCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHH
Q 000849 772 VCVMSSSMCWEVPLT-A-HLATGRK------------------MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYY 831 (1254)
Q Consensus 772 VLVaT~~l~~Gvdip-~-~~V~~~~------------------~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~ 831 (1254)
|||||+++++|||+| + +||+.+. ++|.+++.||+|||||.+ +|.||.++++.+.
T Consensus 265 VlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~---~G~cyrL~t~~~~--- 338 (819)
T TIGR01970 265 VVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE---PGVCYRLWSEEQH--- 338 (819)
T ss_pred EEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC---CCEEEEeCCHHHH---
Confidence 999999999999999 4 5554332 257788999999999985 8999999986543
Q ss_pred HHhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhH
Q 000849 832 KKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLE 911 (1254)
Q Consensus 832 ~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~ 911 (1254)
..+.....| ..+...+...++.....|. .+..+ |.+...|. .+.++.|++.|.
T Consensus 339 ~~l~~~~~P--EI~r~~L~~~~L~l~~~g~-~~~~~--------~~~l~~P~----------------~~~i~~a~~~L~ 391 (819)
T TIGR01970 339 QRLPAQDEP--EILQADLSGLALELAQWGA-KDPSD--------LRWLDAPP----------------SVALAAARQLLQ 391 (819)
T ss_pred HhhhcCCCc--ceeccCcHHHHHHHHHcCC-CChhh--------CCCCCCcC----------------HHHHHHHHHHHH
Confidence 333222222 1223334444444333332 22211 22222332 245889999999
Q ss_pred HCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHh
Q 000849 912 ATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLA 964 (1254)
Q Consensus 912 ~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils 964 (1254)
..|+|+. ++ .+|++|+.|+.++++|.-+++++.+....+ ...++.+.|
T Consensus 392 ~lgald~--~~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~-~~~~~~iaa 439 (819)
T TIGR01970 392 RLGALDA--QG--RLTAHGKAMAALGCHPRLAAMLLSAHSTGL-AALACDLAA 439 (819)
T ss_pred HCCCCCC--CC--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCC-HHHHHHHHH
Confidence 9999953 33 579999999999999999999998655443 333444333
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.3e-38 Score=383.80 Aligned_cols=333 Identities=18% Similarity=0.238 Sum_probs=243.8
Q ss_pred hHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHH
Q 000849 411 SYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILR 490 (1254)
Q Consensus 411 ~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~ 490 (1254)
.++..|. |..|+|+|.++++.++.+++ +++. +|||+|||+||++|++.
T Consensus 451 ~lk~~FG-~~sFRp~Q~eaI~aiL~GrD-VLVi------------------------------mPTGSGKSLcYQLPAL~ 498 (1195)
T PLN03137 451 NNKKVFG-NHSFRPNQREIINATMSGYD-VFVL------------------------------MPTGGGKSLTYQLPALI 498 (1195)
T ss_pred HHHHHcC-CCCCCHHHHHHHHHHHcCCC-EEEE------------------------------cCCCccHHHHHHHHHHH
Confidence 3455565 88999999999999998865 5555 99999999999999983
Q ss_pred HHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-----hc----ccCcEEEEcHhhHH-
Q 000849 491 NHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LL----EKGQIIISTPEKWD- 560 (1254)
Q Consensus 491 ~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~----~~~~Iiv~Tpe~l~- 560 (1254)
..+ .+|||+|+++|+.++...+.. .|+.+..+.|+...... .+ ...+|+|+|||++.
T Consensus 499 ------~~G--iTLVISPLiSLmqDQV~~L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~ 565 (1195)
T PLN03137 499 ------CPG--ITLVISPLVSLIQDQIMNLLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAK 565 (1195)
T ss_pred ------cCC--cEEEEeCHHHHHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhc
Confidence 244 799999999999977776654 37888888887654321 11 34699999999983
Q ss_pred --HHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCCCC
Q 000849 561 --ALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGASSH 636 (1254)
Q Consensus 561 --~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~~~ 636 (1254)
.+++..........+++|||||||++. ++|..+..-...+..+.... +..+++++|||++.. +++...|+....
T Consensus 566 ~d~ll~~L~~L~~~~~LslIVIDEAHcVS-qWGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~ 643 (1195)
T PLN03137 566 SDSLLRHLENLNSRGLLARFVIDEAHCVS-QWGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNC 643 (1195)
T ss_pred chHHHHHHHhhhhccccceeccCcchhhh-hcccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCc
Confidence 234432221223558999999999998 56666555444544443333 467899999998743 678888876543
Q ss_pred eeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccc
Q 000849 637 GVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKS 716 (1254)
Q Consensus 637 ~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~ 716 (1254)
.++. ....|| .+...+... .. .. ...+...+... ..+.+.||||+|+++|+.++..|..
T Consensus 644 ~vfr-~Sf~Rp-NL~y~Vv~k--~k--k~----le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~---------- 702 (1195)
T PLN03137 644 VVFR-QSFNRP-NLWYSVVPK--TK--KC----LEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQE---------- 702 (1195)
T ss_pred EEee-cccCcc-ceEEEEecc--ch--hH----HHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHH----------
Confidence 3322 222233 233322211 10 00 01122222222 3356899999999999999987743
Q ss_pred cccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccc
Q 000849 717 AFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRK 794 (1254)
Q Consensus 717 ~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~ 794 (1254)
.+..+.+|||||++++|..+++.|.+|+++|||||+++++|||+| ..||+++.
T Consensus 703 -------------------------~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 703 -------------------------FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred -------------------------CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC
Confidence 156789999999999999999999999999999999999999999 45559999
Q ss_pred cCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCC
Q 000849 795 MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEA 838 (1254)
Q Consensus 795 ~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~ 838 (1254)
|.++.+|+||+|||||.|. .|.|++++...+...++.++...
T Consensus 758 PkSiEsYyQriGRAGRDG~--~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQ--RSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred CCCHHHHHhhhcccCCCCC--CceEEEEecHHHHHHHHHHHhcc
Confidence 9999999999999999997 89999999988877777777543
No 43
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-38 Score=319.23 Aligned_cols=341 Identities=13% Similarity=0.193 Sum_probs=258.2
Q ss_pred ccCCchHHHHhcc-CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHH
Q 000849 406 ALQNPSYEALYQN-YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICA 484 (1254)
Q Consensus 406 ~l~~~~~~~~~~~-~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~ 484 (1254)
.|.+.-++.+|.. |+.|..+|+.|++.++.|++ |+++|..|+|||..|
T Consensus 33 gl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrd-------------------------------ViaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 33 GLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRD-------------------------------VIAQAQSGTGKTATF 81 (400)
T ss_pred CchHHHHHHHHHhccCCchHHHhhhhhhhhcccc-------------------------------eEEEecCCCCceEEE
Confidence 3455667777766 99999999999999999876 455599999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecccccc--chhhccc-CcEEEEcHhhHHH
Q 000849 485 EFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM--DLKLLEK-GQIIISTPEKWDA 561 (1254)
Q Consensus 485 ~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~--~~~~~~~-~~Iiv~Tpe~l~~ 561 (1254)
-+.+++.+.-.... .++++++|||+||.|+.+.+.. ++..+|+.+..+.|+.+. +.+.+.- .+++.+||++..+
T Consensus 82 si~vlq~~d~~~r~--tQ~lilsPTRELa~Qi~~vi~a-lg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~d 158 (400)
T KOG0328|consen 82 SISVLQSLDISVRE--TQALILSPTRELAVQIQKVILA-LGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLD 158 (400)
T ss_pred Eeeeeeecccccce--eeEEEecChHHHHHHHHHHHHH-hcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHH
Confidence 88888776653333 3899999999999999988876 777789999999988763 3344443 4999999999988
Q ss_pred HHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-hHHHHHhhcCCCCeeEe
Q 000849 562 LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGASSHGVFN 640 (1254)
Q Consensus 562 l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~-~~~l~~~l~~~~~~~~~ 640 (1254)
++++.. ..-..++++|+||++.+.+. | +-.++-.+.+.++++.|++++|||+|. ..++.+++-.++..++.
T Consensus 159 mikr~~--L~tr~vkmlVLDEaDemL~k-g-----fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv 230 (400)
T KOG0328|consen 159 MIKRRS--LRTRAVKMLVLDEADEMLNK-G-----FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV 230 (400)
T ss_pred HHHhcc--ccccceeEEEeccHHHHHHh-h-----HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE
Confidence 887733 33678999999999998864 2 334444555566899999999999983 35556666555544444
Q ss_pred cCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccc
Q 000849 641 FPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLL 720 (1254)
Q Consensus 641 ~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~ 720 (1254)
-..+..-.-+...+......++ .......+|+.+ .-.+++|||||++.+..+.+.+...
T Consensus 231 krdeltlEgIKqf~v~ve~Eew---KfdtLcdLYd~L-----tItQavIFcnTk~kVdwLtekm~~~------------- 289 (400)
T KOG0328|consen 231 KRDELTLEGIKQFFVAVEKEEW---KFDTLCDLYDTL-----TITQAVIFCNTKRKVDWLTEKMREA------------- 289 (400)
T ss_pred ecCCCchhhhhhheeeechhhh---hHhHHHHHhhhh-----ehheEEEEecccchhhHHHHHHHhh-------------
Confidence 2222211112233322222221 111122344443 3458999999999999888776532
Q ss_pred cChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-c-eeecccccCCH
Q 000849 721 CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-A-HLATGRKMLIL 798 (1254)
Q Consensus 721 ~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~-~~V~~~~~~s~ 798 (1254)
.+.|...||+|++++|..+++.|++|+.+||++|++.++|+|+| + .+|+|+.|...
T Consensus 290 ----------------------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nr 347 (400)
T KOG0328|consen 290 ----------------------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNR 347 (400)
T ss_pred ----------------------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccH
Confidence 34688899999999999999999999999999999999999999 4 55599999999
Q ss_pred HHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849 799 TTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 799 ~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
+.|+||+||.||.|. .|.++-|+..++...+..
T Consensus 348 e~YIHRIGRSGRFGR--kGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 348 ELYIHRIGRSGRFGR--KGVAINFVKSDDLRILRD 380 (400)
T ss_pred HHHhhhhccccccCC--cceEEEEecHHHHHHHHH
Confidence 999999999999997 999999999888666544
No 44
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.2e-36 Score=380.05 Aligned_cols=402 Identities=15% Similarity=0.158 Sum_probs=284.9
Q ss_pred HHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe
Q 000849 456 AKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535 (1254)
Q Consensus 456 ~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~ 535 (1254)
.-.++++.+.++.+++++||||||||+++.+++++.... .+ +++|++|||++|.|+++++.+.++...|..|+..
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NG--KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CC--eEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 456788888889999999999999999999999865322 34 8999999999999999999888877678888877
Q ss_pred ccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEE
Q 000849 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIV 615 (1254)
Q Consensus 536 ~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii 615 (1254)
.+..... -.+++|+|+||+++..++.. +..++++++||+||+|. |+...+..+..++.+.+..+.+.|+|
T Consensus 84 vr~~~~~---~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHE----R~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 84 MRAESKV---GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHE----RSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred ecCcccc---CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCc----cccccchHHHHHHHHHHhCCccceEE
Confidence 6644321 13568999999999666553 45799999999999994 43333333444444444456789999
Q ss_pred EecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhh-hcCCCeEEEecCh
Q 000849 616 ALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVFVPSR 694 (1254)
Q Consensus 616 ~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~lVF~~s~ 694 (1254)
+||||++ .+.+.+|++..+ ++... .+..|++.++....... ... ..+...+...+ ...+++|||++++
T Consensus 154 lmSATl~-~~~l~~~~~~~~--~I~~~--gr~~pV~~~y~~~~~~~---~~~---~~v~~~l~~~l~~~~g~iLVFlpg~ 222 (812)
T PRK11664 154 IMSATLD-NDRLQQLLPDAP--VIVSE--GRSFPVERRYQPLPAHQ---RFD---EAVARATAELLRQESGSLLLFLPGV 222 (812)
T ss_pred EEecCCC-HHHHHHhcCCCC--EEEec--CccccceEEeccCchhh---hHH---HHHHHHHHHHHHhCCCCEEEEcCCH
Confidence 9999995 456788886432 22222 23445555443322111 111 01111122222 2468999999999
Q ss_pred hhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 000849 695 KYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCV 774 (1254)
Q Consensus 695 ~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLV 774 (1254)
++++.++..|..... .+..+..+||+|++++|..+++.|++|+.+|||
T Consensus 223 ~ei~~l~~~L~~~~~--------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlv 270 (812)
T PRK11664 223 GEIQRVQEQLASRVA--------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVL 270 (812)
T ss_pred HHHHHHHHHHHHhcc--------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEE
Confidence 999999988854211 023588899999999999999999999999999
Q ss_pred eCcccccccCCc--ceeecccc------------------cCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHh
Q 000849 775 MSSSMCWEVPLT--AHLATGRK------------------MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 775 aT~~l~~Gvdip--~~~V~~~~------------------~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
||+++++|||+| .+||+.+. ++|.+++.||+|||||.+ +|.||.++++.+ +..+
T Consensus 271 ATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t~~~---~~~l 344 (812)
T PRK11664 271 ATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYSKEQ---AERA 344 (812)
T ss_pred ecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecCHHH---HhhC
Confidence 999999999999 45554221 157789999999999986 899999998543 3444
Q ss_pred hcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHCC
Q 000849 835 LYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATR 914 (1254)
Q Consensus 835 l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g 914 (1254)
.....| .-+...|...++.....|. .+..+ |.+...|. .+.+++|+..|...|
T Consensus 345 ~~~~~P--EI~r~dL~~~~L~l~~~g~-~~~~~--------~~~ld~P~----------------~~~~~~A~~~L~~lg 397 (812)
T PRK11664 345 AAQSEP--EILHSDLSGLLLELLQWGC-HDPAQ--------LSWLDQPP----------------AAALAAAKRLLQQLG 397 (812)
T ss_pred ccCCCC--ceeccchHHHHHHHHHcCC-CCHHh--------CCCCCCCC----------------HHHHHHHHHHHHHCC
Confidence 333333 2334455555555444443 22221 22223332 246899999999999
Q ss_pred CceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccC
Q 000849 915 SIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTS 952 (1254)
Q Consensus 915 ~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~ 952 (1254)
+++. + ..+|++|+.|+.++++|.-+++++.+...
T Consensus 398 ald~--~--g~lT~~G~~m~~lp~~Prla~~ll~a~~~ 431 (812)
T PRK11664 398 ALDG--Q--GRLTARGRKMAALGNDPRLAAMLVAAKED 431 (812)
T ss_pred CCCC--C--CCcCHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 9953 3 36789999999999999999999976543
No 45
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=342.72 Aligned_cols=341 Identities=18% Similarity=0.188 Sum_probs=262.3
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh--c
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA--S 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~--~ 496 (1254)
|-.++.+|+++++..+.|++ ++-. |-||||||++|+.|+++.+... .
T Consensus 89 fv~~teiQ~~~Ip~aL~G~D-vlGA------------------------------AkTGSGKTLAFlvPvlE~L~r~kWs 137 (758)
T KOG0343|consen 89 FVKMTEIQRDTIPMALQGHD-VLGA------------------------------AKTGSGKTLAFLVPVLEALYRLKWS 137 (758)
T ss_pred CccHHHHHHhhcchhccCcc-cccc------------------------------cccCCCceeeehHHHHHHHHHcCCC
Confidence 88999999999999999977 6666 9999999999999999988764 2
Q ss_pred CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccc--hhhcccCcEEEEcHhhHHHHHHhhhcccccce
Q 000849 497 ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ 574 (1254)
Q Consensus 497 ~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~ 574 (1254)
+..+.-+|||.|||+||.|+++.+.+ .+...+.+.+.+.|+.... ...+.+.+|+|||||+|..++.... ...-++
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~k-vgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~ 215 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNK-VGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSN 215 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHH-HhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCc
Confidence 33456899999999999999999986 7777789999999987754 3456778999999999966665422 224568
Q ss_pred eeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-hHHHHHhhcCCCCeeEec--CCCCcccccE
Q 000849 575 VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGASSHGVFNF--PPGVRPVPLE 651 (1254)
Q Consensus 575 v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~-~~~l~~~l~~~~~~~~~~--~~~~r~v~l~ 651 (1254)
+.++|+|||+++.+.. +-..+..+.+.++...|.+++|||-.. ..++++.--.++..+-.. ....-|..+.
T Consensus 216 lQmLvLDEADR~LDMG------Fk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~ 289 (758)
T KOG0343|consen 216 LQMLVLDEADRMLDMG------FKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQ 289 (758)
T ss_pred ceEEEeccHHHHHHHh------HHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhh
Confidence 9999999999999632 233444555566889999999999874 467776543333222111 1223355555
Q ss_pred EEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHh
Q 000849 652 IQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVS 731 (1254)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~ 731 (1254)
+.+..++..+.. ..+|..|..+ ...++|||++|.+++..++..++..-
T Consensus 290 Q~y~~v~l~~Ki-------~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlr----------------------- 337 (758)
T KOG0343|consen 290 QSYVIVPLEDKI-------DMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLR----------------------- 337 (758)
T ss_pred heEEEEehhhHH-------HHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcC-----------------------
Confidence 555444433322 2345555544 56789999999999999887765421
Q ss_pred hcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccC
Q 000849 732 IIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAG 809 (1254)
Q Consensus 732 ~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaG 809 (1254)
.+..+..+||+|++..|..++..|.....-||+||+++++|+|+| ..||+.+.|.++.+|+||+||+.
T Consensus 338 ----------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtA 407 (758)
T KOG0343|consen 338 ----------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTA 407 (758)
T ss_pred ----------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhh
Confidence 145678899999999999999999999999999999999999999 46669999999999999999999
Q ss_pred CCCCCCCceEEEEccCCcHHHHHHhhc-CCcccc
Q 000849 810 RPLLDNSEKCVILCHAPHKEYYKKFLY-EAFPVE 842 (1254)
Q Consensus 810 R~g~d~~G~~iil~~~~~~~~~~~~l~-~~~pie 842 (1254)
|... .|.++++..+.+.+.+..-++ ...|++
T Consensus 408 R~~~--~G~sll~L~psEeE~~l~~Lq~k~I~i~ 439 (758)
T KOG0343|consen 408 RYKE--RGESLLMLTPSEEEAMLKKLQKKKIPIK 439 (758)
T ss_pred cccC--CCceEEEEcchhHHHHHHHHHHcCCCHH
Confidence 9875 899999999988666655444 446654
No 46
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=343.02 Aligned_cols=331 Identities=20% Similarity=0.234 Sum_probs=252.7
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhc--
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRAS-- 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~-- 496 (1254)
|..|+|+|.+++|..++.++ +|++|.||||||.+|++|++-.+....
T Consensus 265 y~eptpIqR~aipl~lQ~rD-------------------------------~igvaETgsGktaaf~ipLl~~IsslP~~ 313 (673)
T KOG0333|consen 265 YKEPTPIQRQAIPLGLQNRD-------------------------------PIGVAETGSGKTAAFLIPLLIWISSLPPM 313 (673)
T ss_pred CCCCchHHHhhccchhccCC-------------------------------eeeEEeccCCccccchhhHHHHHHcCCCc
Confidence 99999999999998776555 555699999999999999998776632
Q ss_pred -----CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh---hcccCcEEEEcHhhHHHHHHhhhc
Q 000849 497 -----ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---LLEKGQIIISTPEKWDALSRRWKQ 568 (1254)
Q Consensus 497 -----~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~ 568 (1254)
...+|.+++++|||+|++|+.++-.+ |++.+|+++..+.|+.+.+.+ ....++|+|+||++|++.+.+.
T Consensus 314 ~~~en~~~gpyaiilaptReLaqqIeeEt~k-f~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr-- 390 (673)
T KOG0333|consen 314 ARLENNIEGPYAIILAPTRELAQQIEEETNK-FGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-- 390 (673)
T ss_pred chhhhcccCceeeeechHHHHHHHHHHHHHH-hcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH--
Confidence 12257999999999999999988775 777779999999999876654 3356799999999996666552
Q ss_pred ccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhh----------------cC--CCcEEEEecCCCCCh-HHHH
Q 000849 569 RKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQ----------------VE--NKIRIVALSTSLANA-KDLG 628 (1254)
Q Consensus 569 ~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~----------------~~--~~~rii~lSATl~~~-~~l~ 628 (1254)
...++...++|+|||+.+.| .+-+.+..+++.|...... .. .-.+.+++|||+|.. +.++
T Consensus 391 ~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verla 470 (673)
T KOG0333|consen 391 YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLA 470 (673)
T ss_pred HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHH
Confidence 23478999999999999998 5667776677665322111 01 127899999999865 4555
Q ss_pred -HhhcCCCCeeEecCCCCcccccE-EEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHH
Q 000849 629 -EWIGASSHGVFNFPPGVRPVPLE-IQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMI 706 (1254)
Q Consensus 629 -~~l~~~~~~~~~~~~~~r~v~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~ 706 (1254)
.||..+. +.......+|.+.- +.+.......... .+ ..+++. ....|+|||+|+++.|+.+|+.|-+
T Consensus 471 r~ylr~pv--~vtig~~gk~~~rveQ~v~m~~ed~k~k-------kL-~eil~~-~~~ppiIIFvN~kk~~d~lAk~LeK 539 (673)
T KOG0333|consen 471 RSYLRRPV--VVTIGSAGKPTPRVEQKVEMVSEDEKRK-------KL-IEILES-NFDPPIIIFVNTKKGADALAKILEK 539 (673)
T ss_pred HHHhhCCe--EEEeccCCCCccchheEEEEecchHHHH-------HH-HHHHHh-CCCCCEEEEEechhhHHHHHHHHhh
Confidence 4554432 33334444555432 3333222221111 11 122222 3468999999999999999987743
Q ss_pred HhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc
Q 000849 707 YSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT 786 (1254)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip 786 (1254)
.++.+..+|||-++++|..+++.|++|..+|||||+++++|||+|
T Consensus 540 -----------------------------------~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIp 584 (673)
T KOG0333|consen 540 -----------------------------------AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIP 584 (673)
T ss_pred -----------------------------------ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCC
Confidence 367899999999999999999999999999999999999999999
Q ss_pred --ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHH
Q 000849 787 --AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYY 831 (1254)
Q Consensus 787 --~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~ 831 (1254)
.+||+++...++.+|.||+||+||+|. .|.++.|++..+.+.|
T Consensus 585 nVSlVinydmaksieDYtHRIGRTgRAGk--~GtaiSflt~~dt~v~ 629 (673)
T KOG0333|consen 585 NVSLVINYDMAKSIEDYTHRIGRTGRAGK--SGTAISFLTPADTAVF 629 (673)
T ss_pred ccceeeecchhhhHHHHHHHhcccccccc--CceeEEEeccchhHHH
Confidence 677799999999999999999999998 8999999998875544
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8.9e-38 Score=394.96 Aligned_cols=286 Identities=26% Similarity=0.342 Sum_probs=229.0
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|..||++|++|.++|||||+||+||||+|+++|||+++++|+.. ++.++++.+|+||+|||||||+|..|.++
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~--~~~~~~~~~~~Qm~GRAGR~~~d~~G~~i 382 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNF--GWEDIPVLEIQQMMGRAGRPKYDEVGEAI 382 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCC--CceeCCHHHHHHhhhccCCCCcCCCceEE
Confidence 6899999999999999999999999999999999999999999999743 46789999999999999999999999999
Q ss_pred EEecCCc-HHHHHHhh-cCCCCchhhHH--HHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcCc
Q 000849 81 IITGHSE-LQYYLSLM-NQQLPIESQFV--SKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLD 156 (1254)
Q Consensus 81 i~~~~~~-~~~~~~~~-~~~~~i~s~l~--~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~ 156 (1254)
+++..++ .+.|.+++ +.++++.|.+. +.+.+|++++|+.|++.+.+|+++|+++||+|. +||++|+
T Consensus 383 i~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~~~~~~------- 452 (720)
T PRK00254 383 IVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDLYS------- 452 (720)
T ss_pred EEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hhcChHh-------
Confidence 9998755 34455543 44445666553 367899999999999999999999999999994 4677665
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCcccccCccCceeec--------------------------------------------
Q 000849 157 ITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSE-------------------------------------------- 192 (1254)
Q Consensus 157 ~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t-------------------------------------------- 192 (1254)
+ .+.+++++..|.+++||..+. .+.+.+|
T Consensus 453 --~----~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e 525 (720)
T PRK00254 453 --L----EEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPD 525 (720)
T ss_pred --H----HHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCcc
Confidence 2 457888999999999998863 3568888
Q ss_pred --------ccHHHHHHHhccC------CccCCC--CCCC--hhHHHHHHHHHHHccccc----cCccccc-cC-----cH
Q 000849 193 --------KIKMELAKLLDRV------PIPVKE--SLEE--PSAKINVLLQTYISQLKL----EGLSLTS-DM-----SA 244 (1254)
Q Consensus 193 --------~e~~~l~~l~~~~------~~~~~~--~~~~--~~~Kv~~Llq~~is~~~~----~~~~l~~-D~-----~a 244 (1254)
+|...|.++...+ +.|.+. .+.. ++.|+++|||+|++|.++ +.|+..+ |+ ++
T Consensus 526 ~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~ 605 (720)
T PRK00254 526 MTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELA 605 (720)
T ss_pred ccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHH
Confidence 0111111000000 011111 1112 678999999999999997 4566665 76 99
Q ss_pred HHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHhccCCCCCcccccCCCCHHHHHHHHhcCCC
Q 000849 245 GRLSRALFEIVLKRGWS-QLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF 305 (1254)
Q Consensus 245 ~ri~~a~~ei~~~~~~~-~~a~~~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~ 305 (1254)
.|+++|+.++|...||. .....+.+|++||.+|+|++++||.|+||+|+.++++|.++|+.
T Consensus 606 ~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~ 667 (720)
T PRK00254 606 DWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFR 667 (720)
T ss_pred HHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCC
Confidence 99999999999988873 33445568999999999999999999999999999999999986
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.6e-36 Score=373.39 Aligned_cols=323 Identities=24% Similarity=0.327 Sum_probs=228.9
Q ss_pred hHHHHHHHhhcccCCChHHHHHHhhCCcc------eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHH
Q 000849 439 NVLVAALSRKLMFARLPAKQRITAALPNI------ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEAL 512 (1254)
Q Consensus 439 n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~------~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~L 512 (1254)
+.++..|...+||++++.|++++.+|... +.++++||||||||++|++|++..+.. +. +++|++||++|
T Consensus 248 ~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~--q~lilaPT~~L 322 (681)
T PRK10917 248 GELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GY--QAALMAPTEIL 322 (681)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEeccHHH
Confidence 46778889999999999999999999543 689999999999999999999987765 44 99999999999
Q ss_pred HHHHHHHHHHhhccccCcEEEEeccccccchh-----hcc--cCcEEEEcHhhHHHHHHhhhcccccceeeEEEeccccc
Q 000849 513 AKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 585 (1254)
Q Consensus 513 a~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~--~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~ 585 (1254)
|.|+++.+++.+... |+++..++|+.+...+ .+. .++|+|+||+.+. ....+.+++++|+||+|+
T Consensus 323 A~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 323 AEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhh
Confidence 999999999877664 8999999999874322 122 4799999998762 123478999999999998
Q ss_pred ccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHH-HhhcCCC-CeeEecCCCCcccccEEEEeeccCCChH
Q 000849 586 IGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLG-EWIGASS-HGVFNFPPGVRPVPLEIQIQGVDITNFE 663 (1254)
Q Consensus 586 l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~-~~l~~~~-~~~~~~~~~~r~v~l~~~~~~~~~~~~~ 663 (1254)
++... ...+. . .....++++||||+. +..++ ...+... ..+...+.... ++...+... ...
T Consensus 395 fg~~q-------r~~l~---~-~~~~~~iL~~SATp~-prtl~~~~~g~~~~s~i~~~p~~r~--~i~~~~~~~--~~~- 457 (681)
T PRK10917 395 FGVEQ-------RLALR---E-KGENPHVLVMTATPI-PRTLAMTAYGDLDVSVIDELPPGRK--PITTVVIPD--SRR- 457 (681)
T ss_pred hhHHH-------HHHHH---h-cCCCCCEEEEeCCCC-HHHHHHHHcCCCceEEEecCCCCCC--CcEEEEeCc--ccH-
Confidence 75211 11111 1 144688999999964 32332 2222221 11222222222 233322211 111
Q ss_pred HHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHh-
Q 000849 664 ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATL- 742 (1254)
Q Consensus 664 ~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l- 742 (1254)
...+..+.+.+..+++++|||+..++.+.+...- .+.. .+.|.+.+
T Consensus 458 -------~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~------------------~~~~--------~~~L~~~~~ 504 (681)
T PRK10917 458 -------DEVYERIREEIAKGRQAYVVCPLIEESEKLDLQS------------------AEET--------YEELQEAFP 504 (681)
T ss_pred -------HHHHHHHHHHHHcCCcEEEEEcccccccchhHHH------------------HHHH--------HHHHHHHCC
Confidence 2234555555578899999999765443220000 0000 01122222
Q ss_pred hccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-ccccc-CCHHHHHHhhcccCCCCCCCCceE
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKM-LILTTLLQMMGHAGRPLLDNSEKC 819 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~-~s~~~~~Qr~GRaGR~g~d~~G~~ 819 (1254)
+..++.+||+|++++|+.+++.|++|+++|||||+++++|+|+| +.+| .++.+ .+.+.+.||+||+||.|. .|.|
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~--~g~~ 582 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAA--QSYC 582 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCC--ceEE
Confidence 35799999999999999999999999999999999999999999 4444 55544 578999999999999986 8999
Q ss_pred EEEccCC
Q 000849 820 VILCHAP 826 (1254)
Q Consensus 820 iil~~~~ 826 (1254)
+++++.+
T Consensus 583 ill~~~~ 589 (681)
T PRK10917 583 VLLYKDP 589 (681)
T ss_pred EEEECCC
Confidence 9999643
No 49
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.8e-37 Score=374.48 Aligned_cols=379 Identities=26% Similarity=0.342 Sum_probs=288.9
Q ss_pred HHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhh
Q 000849 445 LSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKF 524 (1254)
Q Consensus 445 ~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~ 524 (1254)
+-+..||++.++|++++..|.++..|+|+||||||||++++.++...+.. +. +++|++|.+||.+|.+.++..+|
T Consensus 112 ~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---~q--rviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 112 PAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---GQ--RVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred HHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---CC--ceEeccchhhhhhhHHHHHHHHh
Confidence 34679999999999999999999999999999999999999999988877 55 79999999999999999999999
Q ss_pred ccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHH
Q 000849 525 GKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRY 603 (1254)
Q Consensus 525 ~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~ 603 (1254)
+.. .-.++.+|||.+.+ ..+.++|+|.|.|..++.+. ...+..+..||+||+|.+++ +||.++|..+-.+
T Consensus 187 gdv-~~~vGL~TGDv~IN----~~A~clvMTTEILRnMlyrg--~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l-- 257 (1041)
T COG4581 187 GDV-ADMVGLMTGDVSIN----PDAPCLVMTTEILRNMLYRG--SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL-- 257 (1041)
T ss_pred hhh-hhhccceecceeeC----CCCceEEeeHHHHHHHhccC--cccccccceEEEEeeeeccccccchhHHHHHHhc--
Confidence 854 34578999998876 46799999999998887763 45689999999999999999 8999999876543
Q ss_pred HHhhcCCCcEEEEecCCCCChHHHHHhhcCCC-CeeEecCCCCcccccEEEEeecc-------CCC------hHHHHHhh
Q 000849 604 IASQVENKIRIVALSTSLANAKDLGEWIGASS-HGVFNFPPGVRPVPLEIQIQGVD-------ITN------FEARMKAM 669 (1254)
Q Consensus 604 ~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~-~~~~~~~~~~r~v~l~~~~~~~~-------~~~------~~~~~~~~ 669 (1254)
+.++++|+||||+||+++++.|++... ..+.....+.||+|++.++.... ... +......+
T Consensus 258 -----P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l 332 (1041)
T COG4581 258 -----PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSL 332 (1041)
T ss_pred -----CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhh
Confidence 678899999999999999999998543 44566678899999998775431 000 00000000
Q ss_pred C---------HH---------------------HHHHHHhhh--hcCCCeEEEecChhhHHHHHHHHHHHhhccCccccc
Q 000849 670 T---------KP---------------------TYTAIMQHA--KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSA 717 (1254)
Q Consensus 670 ~---------~~---------------------~~~~i~~~~--~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~ 717 (1254)
. .+ ....+...+ .+.-|+|+|+-+++.|+..+..+...-.
T Consensus 333 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl-------- 404 (1041)
T COG4581 333 SCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDL-------- 404 (1041)
T ss_pred hccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhccccc--------
Confidence 0 00 000111111 4567999999999999999987753211
Q ss_pred ccccChhc-hhh----HHhhc---------ChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCccccccc
Q 000849 718 FLLCSAKE-VEP----HVSII---------QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEV 783 (1254)
Q Consensus 718 ~~~~~~~~-l~~----~~~~~---------~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gv 783 (1254)
++..+.+. +.. .+..+ .-..+...+..|+++||+||-+..|..++.+|..|-++|++||.+++.|+
T Consensus 405 ~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~Gi 484 (1041)
T COG4581 405 VLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGI 484 (1041)
T ss_pred ccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhc
Confidence 11122222 222 22222 22556778889999999999999999999999999999999999999999
Q ss_pred CCcceee--------ccc--ccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc--HHHHHHhh-cCCcccccccchhHH
Q 000849 784 PLTAHLA--------TGR--KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH--KEYYKKFL-YEAFPVESHLHHFLH 850 (1254)
Q Consensus 784 dip~~~V--------~~~--~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~--~~~~~~~l-~~~~pies~l~~~l~ 850 (1254)
|+|++.| +|. ...+..+|.||.|||||.|.|..|.++++..... ......+. ....|+.|.+.....
T Consensus 485 NmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~ 564 (1041)
T COG4581 485 NMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYN 564 (1041)
T ss_pred CCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchh
Confidence 9997666 333 3389999999999999999999999999955433 22233333 356677777754443
No 50
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=332.11 Aligned_cols=443 Identities=16% Similarity=0.152 Sum_probs=338.8
Q ss_pred ChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEE
Q 000849 454 LPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533 (1254)
Q Consensus 454 ~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~ 533 (1254)
.++..++++++..++++++.|.||||||+.....+...-.. .+ +.++-|.+|+|..|..++.++.+.++..+|..|+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt--k~-gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT--KG-GKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc--cC-CceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 35678899999999999999999999999887766544333 22 2269999999999999999999998877776666
Q ss_pred EeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcE
Q 000849 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIR 613 (1254)
Q Consensus 534 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~r 613 (1254)
+-.- .....-.++-|-++|.|+| +|.....+.+.++++||||||| +|....+.++..++.+.+. .++.+
T Consensus 344 YsIR---FEdcTSekTvlKYMTDGmL---lREfL~epdLasYSViiiDEAH----ERTL~TDILfgLvKDIar~-RpdLK 412 (902)
T KOG0923|consen 344 YSIR---FEDCTSEKTVLKYMTDGML---LREFLSEPDLASYSVIIVDEAH----ERTLHTDILFGLVKDIARF-RPDLK 412 (902)
T ss_pred eEEE---eccccCcceeeeeecchhH---HHHHhccccccceeEEEeehhh----hhhhhhhHHHHHHHHHHhh-CCcce
Confidence 5332 1112224678999999998 7777778889999999999999 8889999999999988765 68999
Q ss_pred EEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhh--hhcCCCeEEEe
Q 000849 614 IVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQH--AKNEKPALVFV 691 (1254)
Q Consensus 614 ii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~lVF~ 691 (1254)
++..|||+ +++.++.||+..+ +|.++...-| +.+++...+..++.+. ++..+.+. -.+.+.+|||.
T Consensus 413 llIsSAT~-DAekFS~fFDdap--IF~iPGRRyP--Vdi~Yt~~PEAdYldA-------ai~tVlqIH~tqp~GDILVFl 480 (902)
T KOG0923|consen 413 LLISSATM-DAEKFSAFFDDAP--IFRIPGRRYP--VDIFYTKAPEADYLDA-------AIVTVLQIHLTQPLGDILVFL 480 (902)
T ss_pred EEeecccc-CHHHHHHhccCCc--EEeccCcccc--eeeecccCCchhHHHH-------HHhhheeeEeccCCccEEEEe
Confidence 99999998 8999999999875 7777665545 4555544444443321 22222211 15678999999
Q ss_pred cChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCce
Q 000849 692 PSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIK 771 (1254)
Q Consensus 692 ~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~ 771 (1254)
...++.+.....|...+..-+...+ ..-+..+|+.|+.+.+.+|++.-..|..+
T Consensus 481 tGQeEIEt~~e~l~~~~~~LGski~--------------------------eliv~PiYaNLPselQakIFePtP~gaRK 534 (902)
T KOG0923|consen 481 TGQEEIETVKENLKERCRRLGSKIR--------------------------ELIVLPIYANLPSELQAKIFEPTPPGARK 534 (902)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccc--------------------------eEEEeeccccCChHHHHhhcCCCCCCcee
Confidence 9999999988888776655443322 22478899999999999999999999999
Q ss_pred EEEeCcccccccCCc--ceeec-------------cc-----ccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHH
Q 000849 772 VCVMSSSMCWEVPLT--AHLAT-------------GR-----KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYY 831 (1254)
Q Consensus 772 VLVaT~~l~~Gvdip--~~~V~-------------~~-----~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~ 831 (1254)
|++||++++.++.|+ .+||+ |. .|+|.++..||+|||||.| +|+|+.+++ ...|
T Consensus 535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt---~~aY 608 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYT---AWAY 608 (902)
T ss_pred EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeec---hhhh
Confidence 999999999999999 45551 11 2478999999999999999 999999998 4556
Q ss_pred HHhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhH
Q 000849 832 KKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLE 911 (1254)
Q Consensus 832 ~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~ 911 (1254)
.+.+.. .++......+|....+...+.|. .|.++ |.+...|. .+.+..||+.|.
T Consensus 609 ~~eLE~-~t~PEIqRtnL~nvVL~LkSLGI----~Dl~~-----FdFmDpPp----------------~etL~~aLE~Ly 662 (902)
T KOG0923|consen 609 EHELEE-MTVPEIQRTNLGNVVLLLKSLGI----HDLIH-----FDFLDPPP----------------TETLLKALEQLY 662 (902)
T ss_pred hhhhcc-CCCcceeeccchhHHHHHHhcCc----chhcc-----cccCCCCC----------------hHHHHHHHHHHH
Confidence 666543 23333446667776666666653 23333 33333332 246788999999
Q ss_pred HCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHHHHHH
Q 000849 912 ATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRL 985 (1254)
Q Consensus 912 ~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l 985 (1254)
.+|++.- ..++|.+|+.|+.|+++|...++++.+-+-.|+ .+++.+.|+.+.+..+..|+.+...-.+-
T Consensus 663 aLGALn~----~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~~v~ad~ 731 (902)
T KOG0923|consen 663 ALGALNH----LGELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDKQVHADN 731 (902)
T ss_pred Hhhcccc----ccchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhhhhhhhh
Confidence 9999953 457899999999999999999999987666654 78999999999999999999887655443
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.5e-36 Score=369.19 Aligned_cols=328 Identities=17% Similarity=0.255 Sum_probs=241.2
Q ss_pred chHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHH
Q 000849 410 PSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAIL 489 (1254)
Q Consensus 410 ~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il 489 (1254)
..+++.|. |+.|+|+|.++++.++++++ +++. +|||+|||++|++|++
T Consensus 15 ~~l~~~fG-~~~~r~~Q~~ai~~il~g~d-vlv~------------------------------apTGsGKTl~y~lpal 62 (607)
T PRK11057 15 QVLQETFG-YQQFRPGQQEIIDAVLSGRD-CLVV------------------------------MPTGGGKSLCYQIPAL 62 (607)
T ss_pred HHHHHHcC-CCCCCHHHHHHHHHHHcCCC-EEEE------------------------------cCCCchHHHHHHHHHH
Confidence 44566665 99999999999999998755 5555 9999999999999987
Q ss_pred HHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-----hc--ccCcEEEEcHhhHH--
Q 000849 490 RNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LL--EKGQIIISTPEKWD-- 560 (1254)
Q Consensus 490 ~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~--~~~~Iiv~Tpe~l~-- 560 (1254)
. ..+ .++|++|+++|+.|+++.++. .|+.+..+.+....... .+ .+.+++++|||++.
T Consensus 63 ~------~~g--~tlVisPl~sL~~dqv~~l~~-----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~ 129 (607)
T PRK11057 63 V------LDG--LTLVVSPLISLMKDQVDQLLA-----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMD 129 (607)
T ss_pred H------cCC--CEEEEecHHHHHHHHHHHHHH-----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcCh
Confidence 3 244 799999999999999998875 36777777666543321 11 23589999999983
Q ss_pred HHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCCCCee
Q 000849 561 ALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGASSHGV 638 (1254)
Q Consensus 561 ~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~~~~~ 638 (1254)
.+... ....+++++||||||++. ++|..+.....++..+... -++.+++++|||+++. .++...++.....+
T Consensus 130 ~~~~~----l~~~~l~~iVIDEaH~i~-~~G~~fr~~y~~L~~l~~~-~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~ 203 (607)
T PRK11057 130 NFLEH----LAHWNPALLAVDEAHCIS-QWGHDFRPEYAALGQLRQR-FPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203 (607)
T ss_pred HHHHH----HhhCCCCEEEEeCccccc-cccCcccHHHHHHHHHHHh-CCCCcEEEEecCCChhHHHHHHHHhCCCCeEE
Confidence 22222 223478999999999998 4555544444445444433 2578899999999865 46777776554322
Q ss_pred EecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccc
Q 000849 639 FNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718 (1254)
Q Consensus 639 ~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~ 718 (1254)
+ .....||. +...+.. .... . ..+...+. . ..++++||||+|++.|+.++..|...
T Consensus 204 ~-~~~~~r~n-l~~~v~~--~~~~---~----~~l~~~l~-~-~~~~~~IIFc~tr~~~e~la~~L~~~----------- 259 (607)
T PRK11057 204 Q-ISSFDRPN-IRYTLVE--KFKP---L----DQLMRYVQ-E-QRGKSGIIYCNSRAKVEDTAARLQSR----------- 259 (607)
T ss_pred E-ECCCCCCc-ceeeeee--ccch---H----HHHHHHHH-h-cCCCCEEEEECcHHHHHHHHHHHHhC-----------
Confidence 2 22222332 1111111 1000 0 11222222 1 46789999999999999999877431
Q ss_pred cccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccC
Q 000849 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKML 796 (1254)
Q Consensus 719 ~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~ 796 (1254)
+..+..+||+|++++|..+++.|++|.++|||||+++++|||+| ..+|+++.|.
T Consensus 260 ------------------------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~ 315 (607)
T PRK11057 260 ------------------------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR 315 (607)
T ss_pred ------------------------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC
Confidence 45688999999999999999999999999999999999999999 4556999999
Q ss_pred CHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCC
Q 000849 797 ILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEA 838 (1254)
Q Consensus 797 s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~ 838 (1254)
|..+|+||+|||||.|. .|.|+++++..+...+++++.+.
T Consensus 316 s~~~y~Qr~GRaGR~G~--~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 316 NIESYYQETGRAGRDGL--PAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred CHHHHHHHhhhccCCCC--CceEEEEeCHHHHHHHHHHHhcC
Confidence 99999999999999996 79999999998888888887654
No 52
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=335.81 Aligned_cols=434 Identities=17% Similarity=0.180 Sum_probs=322.6
Q ss_pred HHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe
Q 000849 456 AKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535 (1254)
Q Consensus 456 ~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~ 535 (1254)
.-+++++.+.+++++|++|+||||||+.....+.+.-.. ..| ++.|.+|+|-.|..+++++....+..+|-.|++.
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~--~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA--SSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc--cCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 456888999999999999999999999887776654333 345 6999999999999999999999988878887764
Q ss_pred ccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEE
Q 000849 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIV 615 (1254)
Q Consensus 536 ~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii 615 (1254)
.- .+...-..+.|.+.|.|.| +|....++.++++++||+|||| +|....+.++..++.+.+. .++.++|
T Consensus 131 IR---Fed~ts~~TrikymTDG~L---LRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKki~~~-R~~LklI 199 (674)
T KOG0922|consen 131 IR---FEDSTSKDTRIKYMTDGML---LREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKKILKK-RPDLKLI 199 (674)
T ss_pred EE---ecccCCCceeEEEecchHH---HHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHHHHhc-CCCceEE
Confidence 42 2222223679999999998 7777778899999999999999 8999999999999998866 6679999
Q ss_pred EecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChh
Q 000849 616 ALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRK 695 (1254)
Q Consensus 616 ~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~ 695 (1254)
.||||+ |++.+++|++..+ ++..+. |..|+++.+...+..++.... .. ....|... .+.+.+|||.+.++
T Consensus 200 imSATl-da~kfS~yF~~a~--i~~i~G--R~fPVei~y~~~p~~dYv~a~---~~-tv~~Ih~~-E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 200 IMSATL-DAEKFSEYFNNAP--ILTIPG--RTFPVEILYLKEPTADYVDAA---LI-TVIQIHLT-EPPGDILVFLTGQE 269 (674)
T ss_pred EEeeee-cHHHHHHHhcCCc--eEeecC--CCCceeEEeccCCchhhHHHH---HH-HHHHHHcc-CCCCCEEEEeCCHH
Confidence 999999 8999999999854 555544 445556655544444433221 11 11223333 67789999999999
Q ss_pred hHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000849 696 YARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVM 775 (1254)
Q Consensus 696 ~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVa 775 (1254)
+.+..+..|.+.......... .-+..+||+|+.+++.+|++.-..|..+|++|
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~---------------------------~~~lply~aL~~e~Q~rvF~p~p~g~RKvIls 322 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCP---------------------------ELILPLYGALPSEEQSRVFDPAPPGKRKVILS 322 (674)
T ss_pred HHHHHHHHHHHHhhhccccCc---------------------------ceeeeecccCCHHHhhccccCCCCCcceEEEE
Confidence 999999988776554322211 13678999999999999999999999999999
Q ss_pred CcccccccCCc--ceeecc-------------c-----ccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhh
Q 000849 776 SSSMCWEVPLT--AHLATG-------------R-----KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFL 835 (1254)
Q Consensus 776 T~~l~~Gvdip--~~~V~~-------------~-----~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l 835 (1254)
|++++.++.|| .+||+. . .|.|.++..||.|||||.+ +|+||.++++ +.|+++.
T Consensus 323 TNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte---~~~~~~~ 396 (674)
T KOG0922|consen 323 TNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTE---SAYDKMP 396 (674)
T ss_pred cceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeH---HHHhhcc
Confidence 99999999999 566611 1 2378999999999999998 8999999985 3457776
Q ss_pred cCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHCCC
Q 000849 836 YEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRS 915 (1254)
Q Consensus 836 ~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g~ 915 (1254)
....|- ....+|...++...+.|.- |.+ + |.+...|. .+.+.+|++.|...|+
T Consensus 397 ~~~~PE--I~R~~Ls~~vL~Lkalgi~----d~l---~--F~f~d~P~----------------~~~l~~AL~~L~~lga 449 (674)
T KOG0922|consen 397 LQTVPE--IQRVNLSSAVLQLKALGIN----DPL---R--FPFIDPPP----------------PEALEEALEELYSLGA 449 (674)
T ss_pred cCCCCc--eeeechHHHHHHHHhcCCC----Ccc---c--CCCCCCCC----------------hHHHHHHHHHHHhcCc
Confidence 666662 2244555555555554422 111 1 21222222 2568899999999999
Q ss_pred ceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhH
Q 000849 916 IIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEE 979 (1254)
Q Consensus 916 i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~ 979 (1254)
|+ +++.++.. +|+.||.++++|...++++.+-...| ..+++.+.|+.+ -+++..|+.+.
T Consensus 450 ld--~~g~lt~p-~G~~ma~~Pl~p~lsk~ll~s~~~gc-~~e~l~i~a~Ls-v~~~f~~p~~~ 508 (674)
T KOG0922|consen 450 LD--DRGKLTSP-LGRQMAELPLEPHLSKMLLKSSELGC-SEEILTIAAMLS-VQSVFSRPKDK 508 (674)
T ss_pred cc--CcCCcCch-HHhhhhhcCCCcchhhhhhhccccCC-cchhhhheeeee-ccceecCccch
Confidence 96 44445443 99999999999999999998666555 456666665554 44555554443
No 53
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.2e-35 Score=368.75 Aligned_cols=437 Identities=14% Similarity=0.167 Sum_probs=288.3
Q ss_pred hHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEE
Q 000849 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534 (1254)
Q Consensus 455 ~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~ 534 (1254)
....++++.|.+++++++.|+||||||+. +|.+-........+ +|++..|+|..|.+++.++.+.++..+|..|++
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g--~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKG--LIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCC--ceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 46678999999999999999999999995 45322111112233 788889988777777777777666544555544
Q ss_pred eccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEE
Q 000849 535 LTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRI 614 (1254)
Q Consensus 535 ~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~ri 614 (1254)
-.. .+.+.-.+++|+|+|||++...+.. +..++++++|||||||. |....+.++..++.+... .++.|+
T Consensus 153 ~vr---f~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHE----RsLn~DfLLg~Lk~lL~~-rpdlKv 221 (1294)
T PRK11131 153 KVR---FNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHE----RSLNIDFILGYLKELLPR-RPDLKV 221 (1294)
T ss_pred eec---CccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccc----cccccchHHHHHHHhhhc-CCCceE
Confidence 221 1222234679999999999665543 45699999999999993 222233344555555433 357899
Q ss_pred EEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhh-hhcCCCeEEEecC
Q 000849 615 VALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQH-AKNEKPALVFVPS 693 (1254)
Q Consensus 615 i~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lVF~~s 693 (1254)
|+||||+ +.+.++++++..+ ++..+... .|+++.+........... ......+...+... ....+++|||+++
T Consensus 222 ILmSATi-d~e~fs~~F~~ap--vI~V~Gr~--~pVei~y~p~~~~~~~~~-~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 222 IITSATI-DPERFSRHFNNAP--IIEVSGRT--YPVEVRYRPIVEEADDTE-RDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EEeeCCC-CHHHHHHHcCCCC--EEEEcCcc--ccceEEEeecccccchhh-HHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 9999999 5778999887554 34444333 344444433221111000 00111122222111 1356789999999
Q ss_pred hhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEE
Q 000849 694 RKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVC 773 (1254)
Q Consensus 694 ~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VL 773 (1254)
+.+++.++..|...... ...|..+||+|++++|..+++. .|..+||
T Consensus 296 ~~EIe~lae~L~~~~~~--------------------------------~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkII 341 (1294)
T PRK11131 296 EREIRDTADALNKLNLR--------------------------------HTEILPLYARLSNSEQNRVFQS--HSGRRIV 341 (1294)
T ss_pred HHHHHHHHHHHHhcCCC--------------------------------cceEeecccCCCHHHHHHHhcc--cCCeeEE
Confidence 99999999887532100 1247789999999999999986 5889999
Q ss_pred EeCcccccccCCc--ceeeccc------------------ccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849 774 VMSSSMCWEVPLT--AHLATGR------------------KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 774 VaT~~l~~Gvdip--~~~V~~~------------------~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
|||+++++|||+| .+||+.+ .+.|.++|.||+|||||.+ +|.||.++++.+ |..
T Consensus 342 VATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d---~~~ 415 (1294)
T PRK11131 342 LATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDD---FLS 415 (1294)
T ss_pred EeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHH---HHh
Confidence 9999999999999 5666432 2367899999999999996 899999998644 333
Q ss_pred hhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHC
Q 000849 834 FLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAT 913 (1254)
Q Consensus 834 ~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~ 913 (1254)
+-. .+....+...|...++...+.|. .+. .+ |-+...|+ .+.|.+++..|.+.
T Consensus 416 ~~~--~~~PEIlR~~L~~viL~lk~lgl-~di---~~-----F~fldpP~----------------~~~i~~al~~L~~L 468 (1294)
T PRK11131 416 RPE--FTDPEILRTNLASVILQMTALGL-GDI---AA-----FPFVEAPD----------------KRNIQDGVRLLEEL 468 (1294)
T ss_pred hhc--ccCCccccCCHHHHHHHHHHcCC-CCc---ce-----eeCCCCCC----------------HHHHHHHHHHHHHC
Confidence 322 22223344555555555444442 221 11 21223332 25689999999999
Q ss_pred CCceecCC-CCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHH
Q 000849 914 RSIIMEDD-MDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEEL 981 (1254)
Q Consensus 914 g~i~~~~~-~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~ 981 (1254)
|+|+.+++ +...+|++|+.||.+|++|..+++++.+....| ..+++.|.|.-+ ..+...|+.+...
T Consensus 469 gAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c-~~evl~IaA~Ls-v~dpf~~p~~~~~ 535 (1294)
T PRK11131 469 GAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGC-VREVMIITSALS-IQDPRERPMDKQQ 535 (1294)
T ss_pred CCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCC-HHHHHHHHHHHc-CCCcccCCchhHH
Confidence 99975432 346899999999999999999999998777665 556665555443 3456666665543
No 54
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.8e-36 Score=372.32 Aligned_cols=332 Identities=20% Similarity=0.254 Sum_probs=251.3
Q ss_pred hHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHH
Q 000849 411 SYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILR 490 (1254)
Q Consensus 411 ~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~ 490 (1254)
.+++.|. |++|+|+|.++++.++++++ ++++ +|||+|||++|++|++.
T Consensus 4 ~l~~~fg-~~~fr~~Q~~~i~~il~g~d-vlv~------------------------------~PTG~GKTl~y~lpal~ 51 (591)
T TIGR01389 4 VLKRTFG-YDDFRPGQEEIISHVLDGRD-VLVV------------------------------MPTGGGKSLCYQVPALL 51 (591)
T ss_pred HHHHhcC-CCCCCHHHHHHHHHHHcCCC-EEEE------------------------------cCCCccHhHHHHHHHHH
Confidence 3566676 99999999999999998864 6666 99999999999999873
Q ss_pred HHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-----hc--ccCcEEEEcHhhHHHHH
Q 000849 491 NHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LL--EKGQIIISTPEKWDALS 563 (1254)
Q Consensus 491 ~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~--~~~~Iiv~Tpe~l~~l~ 563 (1254)
..+ .++|++|+++|+.|+++.++. .|+.+..++++...... .+ ...+|+++|||++...
T Consensus 52 ------~~g--~~lVisPl~sL~~dq~~~l~~-----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~- 117 (591)
T TIGR01389 52 ------LKG--LTVVISPLISLMKDQVDQLRA-----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQD- 117 (591)
T ss_pred ------cCC--cEEEEcCCHHHHHHHHHHHHH-----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh-
Confidence 244 789999999999999998876 37788888887654321 11 2459999999998321
Q ss_pred HhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCCCCeeEec
Q 000849 564 RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGASSHGVFNF 641 (1254)
Q Consensus 564 ~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~~~~~~~~ 641 (1254)
.+.......++++|||||||++. ++|..++....++..+....+ +.+++++|||.+.. .++..+++......+.
T Consensus 118 -~~~~~l~~~~l~~iViDEaH~i~-~~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~- 193 (591)
T TIGR01389 118 -YFLNMLQRIPIALVAVDEAHCVS-QWGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI- 193 (591)
T ss_pred -HHHHHHhcCCCCEEEEeCCcccc-cccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-
Confidence 11122235689999999999998 677777776777766655544 44599999998754 6788899876544432
Q ss_pred CCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCccccccccc
Q 000849 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLC 721 (1254)
Q Consensus 642 ~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~ 721 (1254)
.+..|| .+...+... ... ...+.+.+.. ..+.++||||+|++.|+.++..|...
T Consensus 194 ~~~~r~-nl~~~v~~~--~~~-------~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~-------------- 247 (591)
T TIGR01389 194 TSFDRP-NLRFSVVKK--NNK-------QKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQ-------------- 247 (591)
T ss_pred cCCCCC-CcEEEEEeC--CCH-------HHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhC--------------
Confidence 222333 222222211 111 1112233322 23689999999999999999877421
Q ss_pred ChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-c-eeecccccCCHH
Q 000849 722 SAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-A-HLATGRKMLILT 799 (1254)
Q Consensus 722 ~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~-~~V~~~~~~s~~ 799 (1254)
+..+..+||+|+.++|..+++.|.+|+++|||||+++++|||+| + .+|+++.|.|..
T Consensus 248 ---------------------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~ 306 (591)
T TIGR01389 248 ---------------------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLE 306 (591)
T ss_pred ---------------------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHH
Confidence 45678999999999999999999999999999999999999999 4 555899999999
Q ss_pred HHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCCccc
Q 000849 800 TLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPV 841 (1254)
Q Consensus 800 ~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~pi 841 (1254)
+|+||+|||||.|. .|.|+++++..+...++.++....|.
T Consensus 307 ~y~Q~~GRaGR~G~--~~~~il~~~~~d~~~~~~~i~~~~~~ 346 (591)
T TIGR01389 307 SYYQEAGRAGRDGL--PAEAILLYSPADIALLKRRIEQSEAD 346 (591)
T ss_pred HHhhhhccccCCCC--CceEEEecCHHHHHHHHHHHhccCCc
Confidence 99999999999986 89999999999988888888765553
No 55
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-36 Score=325.48 Aligned_cols=333 Identities=19% Similarity=0.254 Sum_probs=253.9
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh---
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA--- 495 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~--- 495 (1254)
|.+++|+|.+++|..+.+++ |+.+|-||||||.+|..|++-+++..
T Consensus 243 y~kptpiq~qalptalsgrd-------------------------------vigIAktgSgktaAfi~pm~~himdq~eL 291 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRD-------------------------------VIGIAKTGSGKTAAFIWPMIVHIMDQPEL 291 (731)
T ss_pred cccCCccccccccccccccc-------------------------------chheeeccCcchhHHHHHHHHHhcchhhh
Confidence 89999999999999998877 45559999999999999999888764
Q ss_pred cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh---hcccCcEEEEcHhhHHHHHHhhhccccc
Q 000849 496 SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYV 572 (1254)
Q Consensus 496 ~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l 572 (1254)
.++.+|..||++|||+||.|++.+.++ |++..|+++..++|+.+.+.+ ....+.|||||||++..+..... ..+
T Consensus 292 ~~g~gPi~vilvPTrela~Qi~~eaKk-f~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa--tn~ 368 (731)
T KOG0339|consen 292 KPGEGPIGVILVPTRELASQIFSEAKK-FGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA--TNL 368 (731)
T ss_pred cCCCCCeEEEEeccHHHHHHHHHHHHH-hhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc--ccc
Confidence 345578999999999999999999886 777679999999998775532 22567999999999988877633 358
Q ss_pred ceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-hHHHH-HhhcCCCCeeEecCCCCccccc
Q 000849 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN-AKDLG-EWIGASSHGVFNFPPGVRPVPL 650 (1254)
Q Consensus 573 ~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~-~~~l~-~~l~~~~~~~~~~~~~~r~v~l 650 (1254)
.+++++|+||+++|.+.. +...++.+..+..++.|.+++|||++- .+.++ ++|+.+. .+..-.-......+
T Consensus 369 ~rvS~LV~DEadrmfdmG------fe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpV-rvVqg~vgean~dI 441 (731)
T KOG0339|consen 369 SRVSYLVLDEADRMFDMG------FEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPV-RVVQGEVGEANEDI 441 (731)
T ss_pred eeeeEEEEechhhhhccc------cHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCe-eEEEeehhccccch
Confidence 999999999999999632 345566666667899999999999973 34444 4554432 22211111111112
Q ss_pred EEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHH
Q 000849 651 EIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHV 730 (1254)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 730 (1254)
.+.+...... ..++.- +...+.+. ...+++|+||..+..++.++..|..
T Consensus 442 TQ~V~V~~s~--~~Kl~w----l~~~L~~f-~S~gkvlifVTKk~~~e~i~a~Lkl------------------------ 490 (731)
T KOG0339|consen 442 TQTVSVCPSE--EKKLNW----LLRHLVEF-SSEGKVLIFVTKKADAEEIAANLKL------------------------ 490 (731)
T ss_pred hheeeeccCc--HHHHHH----HHHHhhhh-ccCCcEEEEEeccCCHHHHHHHhcc------------------------
Confidence 2222111111 111111 11222222 5677999999999999999876631
Q ss_pred hhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhccc
Q 000849 731 SIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHA 808 (1254)
Q Consensus 731 ~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRa 808 (1254)
-++.|..+||+|.+.+|.+++..|+++...|||||+++++|+|+| -.||+++...++..+.||+||+
T Consensus 491 -----------k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 491 -----------KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred -----------ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 167899999999999999999999999999999999999999999 4566999889999999999999
Q ss_pred CCCCCCCCceEEEEccCCcHHHHHHhhc
Q 000849 809 GRPLLDNSEKCVILCHAPHKEYYKKFLY 836 (1254)
Q Consensus 809 GR~g~d~~G~~iil~~~~~~~~~~~~l~ 836 (1254)
||.|. .|.+|.++++.+.++.-.+++
T Consensus 560 gRag~--kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 560 GRAGE--KGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred ccccc--cceeeEEechhhHHHhhHHHH
Confidence 99996 799999999988876665554
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.2e-36 Score=379.59 Aligned_cols=279 Identities=23% Similarity=0.313 Sum_probs=230.0
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|..||+.|++|.++|||||+|++||||+|+++|||.++.+|++.. ..++|+.+|+||+|||||+|+|..|.++
T Consensus 295 l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~--~~~~s~~~~~Qm~GRAGR~g~d~~g~~~ 372 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGG--IRYLSNMEIKQMIGRAGRPGYDQYGIGY 372 (674)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCC--ceeCCHHHHHHHhhcCCCCCCCCcceEE
Confidence 68899999999999999999999999999999999999999999998643 3679999999999999999999999999
Q ss_pred EEecCCc-HHHHHHhh-cCCCCchhhHHHH--HHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcCc
Q 000849 81 IITGHSE-LQYYLSLM-NQQLPIESQFVSK--LAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLD 156 (1254)
Q Consensus 81 i~~~~~~-~~~~~~~~-~~~~~i~s~l~~~--l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~ 156 (1254)
+++...+ .+.|.+++ +++.|++|+|... +..+++++|+.|.+.+.+|+.+|+++||+|++ |+
T Consensus 373 i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~----------- 438 (674)
T PRK01172 373 IYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG----------- 438 (674)
T ss_pred EEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc-----------
Confidence 9987654 57788877 7888999999864 55556699999999999999999999999974 21
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCcccccCccCceeec-----------------------cc----H--------------
Q 000849 157 ITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSE-----------------------KI----K-------------- 195 (1254)
Q Consensus 157 ~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t-----------------------~e----~-------------- 195 (1254)
.+++.+.++++++.|.++|+|..+ +.+.+| .+ .
T Consensus 439 ---~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~~~ 512 (674)
T PRK01172 439 ---VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREIIP 512 (674)
T ss_pred ---hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccccc
Confidence 124577899999999999999744 457777 00 0
Q ss_pred ------HHHHHHhccCCccCCCCCCChhHHHHHHHHHHHccccc----cCccccc-cC-----cHHHHHHHHHHHHHhcC
Q 000849 196 ------MELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKL----EGLSLTS-DM-----SAGRLSRALFEIVLKRG 259 (1254)
Q Consensus 196 ------~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~is~~~~----~~~~l~~-D~-----~a~ri~~a~~ei~~~~~ 259 (1254)
..+.++.++++. .+...++.|+++|||+|++|.++ +.|+... |. +++|+.+|+..+|...
T Consensus 513 ~~~~~~~~~~~~~~~~~~---~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~- 588 (674)
T PRK01172 513 ANTRDDYYAMEFLEDIGV---IDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIY- 588 (674)
T ss_pred cccchHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 001111111111 11235789999999999999997 3455554 43 8899999999999864
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCCcccccCCCCHHHHHHHHhcCCC
Q 000849 260 WSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF 305 (1254)
Q Consensus 260 ~~~~a~~~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~ 305 (1254)
|...+..+-.|.++|.+|+|++++||+|+||+++++||+|+++|+.
T Consensus 589 ~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~ 634 (674)
T PRK01172 589 KPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFK 634 (674)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCC
Confidence 5667777888999999999999999999999999999999999986
No 57
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-36 Score=338.01 Aligned_cols=328 Identities=18% Similarity=0.223 Sum_probs=245.4
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcC-
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASE- 497 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~- 497 (1254)
|..++|+|+.++|.+..+++ +++| |+||||||.+|++|++..+....+
T Consensus 94 ~~~ptpvQk~sip~i~~Grd-l~ac------------------------------AqTGsGKT~aFLiPii~~~~~~~~~ 142 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISGGRD-LMAC------------------------------AQTGSGKTAAFLIPIISYLLDEGPE 142 (482)
T ss_pred ccCCCcceeeccceeecCCc-eEEE------------------------------ccCCCcchHHHHHHHHHHHHhcCcc
Confidence 89999999999999988866 7777 999999999999999998887421
Q ss_pred -----C--CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccc---hhhcccCcEEEEcHhhHHHHHHhhh
Q 000849 498 -----T--GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD---LKLLEKGQIIISTPEKWDALSRRWK 567 (1254)
Q Consensus 498 -----~--~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~---~~~~~~~~Iiv~Tpe~l~~l~~~~~ 567 (1254)
. ..|.+++++|||+||.|++++.++ |....++++....|+.+.. .....+++|+|+||++|.+++..
T Consensus 143 ~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k-~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-- 219 (482)
T KOG0335|consen 143 DRGESGGGVYPRALILAPTRELVDQIYNEARK-FSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-- 219 (482)
T ss_pred cCcccCCCCCCceEEEeCcHHHhhHHHHHHHh-hcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc--
Confidence 1 247999999999999999999987 4444588888888885533 22345679999999999888776
Q ss_pred cccccceeeEEEecccccccC--CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHH-HhhcCCC--CeeEec
Q 000849 568 QRKYVQQVSLFIIDELHLIGG--QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLG-EWIGASS--HGVFNF 641 (1254)
Q Consensus 568 ~~~~l~~v~liIiDEaH~l~~--~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~-~~l~~~~--~~~~~~ 641 (1254)
....+++++++|+|||+.|.| .+++.++.++.+..... ....|.+++|||.|.. ..++ .|+...- -.+-.+
T Consensus 220 g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~---~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv 296 (482)
T KOG0335|consen 220 GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP---KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV 296 (482)
T ss_pred ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC---ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee
Confidence 344689999999999999998 57777776666554321 2478999999999843 3333 3333221 011112
Q ss_pred CCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhh--hcC-----CCeEEEecChhhHHHHHHHHHHHhhccCcc
Q 000849 642 PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA--KNE-----KPALVFVPSRKYARLTAVDLMIYSCKDSDQ 714 (1254)
Q Consensus 642 ~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~-----~~~lVF~~s~~~~~~la~~L~~~~~~~~~~ 714 (1254)
... ...+...+..+...+.... +.+.+.... ... ..++|||.+++.|..++..|...
T Consensus 297 g~~--~~ni~q~i~~V~~~~kr~~-------Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~------- 360 (482)
T KOG0335|consen 297 GST--SENITQKILFVNEMEKRSK-------LLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN------- 360 (482)
T ss_pred ccc--cccceeEeeeecchhhHHH-------HHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC-------
Confidence 211 1222333333333222221 122221110 022 27999999999999999877421
Q ss_pred cccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecc
Q 000849 715 KSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATG 792 (1254)
Q Consensus 715 ~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~ 792 (1254)
++....+||..++.+|...++.|++|.+.+||||+++++|+|+| .|||+|
T Consensus 361 ----------------------------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 361 ----------------------------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINY 412 (482)
T ss_pred ----------------------------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEe
Confidence 45677899999999999999999999999999999999999999 799999
Q ss_pred cccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHH
Q 000849 793 RKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKE 829 (1254)
Q Consensus 793 ~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~ 829 (1254)
+.|-+..+|+||+||+||.|. .|.++.|++.....
T Consensus 413 DmP~d~d~YvHRIGRTGR~Gn--~G~atsf~n~~~~~ 447 (482)
T KOG0335|consen 413 DMPADIDDYVHRIGRTGRVGN--GGRATSFFNEKNQN 447 (482)
T ss_pred ecCcchhhHHHhccccccCCC--CceeEEEeccccch
Confidence 999999999999999999997 89999999855543
No 58
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-36 Score=319.52 Aligned_cols=328 Identities=16% Similarity=0.236 Sum_probs=240.4
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh---
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA--- 495 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~--- 495 (1254)
|..|+|+|+||+|.+++|.| ++++|.||+|||++|++|-+-++...
T Consensus 240 FqKPtPIqSQaWPI~LQG~D-------------------------------liGVAQTgtgKtL~~L~pg~ihi~aqp~~ 288 (629)
T KOG0336|consen 240 FQKPTPIQSQAWPILLQGID-------------------------------LIGVAQTGTGKTLAFLLPGFIHIDAQPKR 288 (629)
T ss_pred CCCCCcchhcccceeecCcc-------------------------------eEEEEecCCCcCHHHhccceeeeeccchh
Confidence 99999999999999999877 56669999999999999977655432
Q ss_pred -cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccc--hhhc-ccCcEEEEcHhhHHHHHHhhhcccc
Q 000849 496 -SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKY 571 (1254)
Q Consensus 496 -~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~ 571 (1254)
....++.+++++|||+|+.|+....++. .-. |.+..++.|+.+.+ .+.+ .+.+|+++||++|.++... +...
T Consensus 289 ~~qr~~p~~lvl~ptreLalqie~e~~ky-syn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~ 364 (629)
T KOG0336|consen 289 REQRNGPGVLVLTPTRELALQIEGEVKKY-SYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVIN 364 (629)
T ss_pred hhccCCCceEEEeccHHHHHHHHhHHhHh-hhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--Ceee
Confidence 1233578999999999999998887763 322 66666666655433 2333 3459999999999877654 3456
Q ss_pred cceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHH-HhhcCCCCeeEecCCCCccc
Q 000849 572 VQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLG-EWIGASSHGVFNFPPGVRPV 648 (1254)
Q Consensus 572 l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~-~~l~~~~~~~~~~~~~~r~v 648 (1254)
+..+.++|+|||+.+++ .+.+.+..++- -..++.+.++.|||.|.. ..++ .|+..+ +..+..+..-+
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkill-------diRPDRqtvmTSATWP~~VrrLa~sY~Kep---~~v~vGsLdL~ 434 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILL-------DIRPDRQTVMTSATWPEGVRRLAQSYLKEP---MIVYVGSLDLV 434 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhh-------hcCCcceeeeecccCchHHHHHHHHhhhCc---eEEEeccccee
Confidence 89999999999999997 45444433332 235899999999999865 4444 455433 22222222111
Q ss_pred c---cEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhc
Q 000849 649 P---LEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725 (1254)
Q Consensus 649 ~---l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~ 725 (1254)
. +.+.+. ..+-...+ ...+...+..++..++||||.++..|..+...++-
T Consensus 435 a~~sVkQ~i~---v~~d~~k~-----~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l------------------- 487 (629)
T KOG0336|consen 435 AVKSVKQNII---VTTDSEKL-----EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL------------------- 487 (629)
T ss_pred eeeeeeeeEE---ecccHHHH-----HHHHHHHHhcCCCceEEEEEechhhhhhccchhhh-------------------
Confidence 1 111111 11111111 12223333347889999999999887777655421
Q ss_pred hhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHH
Q 000849 726 VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQ 803 (1254)
Q Consensus 726 l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Q 803 (1254)
-+.....+||+-++.+|+..++.|++|+++|||||+++++|+|+| .|+.+|+.|.++++|+|
T Consensus 488 ----------------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVH 551 (629)
T KOG0336|consen 488 ----------------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVH 551 (629)
T ss_pred ----------------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHH
Confidence 144566799999999999999999999999999999999999999 68889999999999999
Q ss_pred hhcccCCCCCCCCceEEEEccCCcHHHHHHhhc
Q 000849 804 MMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836 (1254)
Q Consensus 804 r~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~ 836 (1254)
|+||+||+|. .|.++.+....+....+.+++
T Consensus 552 RvGrtGRaGr--~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 552 RVGRTGRAGR--TGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred HhcccccCCC--CcceEEEEehhhHHHHHHHHH
Confidence 9999999998 899999998888777766543
No 59
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.9e-34 Score=360.35 Aligned_cols=431 Identities=14% Similarity=0.155 Sum_probs=290.5
Q ss_pred HHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe
Q 000849 456 AKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535 (1254)
Q Consensus 456 ~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~ 535 (1254)
...++++.|..++++|+.|+||||||+.....++..- . ...+ +|+++.|+|..|..++.++.+.++...|..|++-
T Consensus 71 ~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~-~-~~~~--~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 71 KREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG-R-GSHG--LIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC-C-CCCc--eEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 4478999999999999999999999996644443211 1 2233 8899999999999999999998876666666652
Q ss_pred ccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEE
Q 000849 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIV 615 (1254)
Q Consensus 536 ~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii 615 (1254)
.. .+.+.-.++.|.|+|||.|...+. .+..+.++++|||||+| +|....+.++..++.+... .++.|+|
T Consensus 147 vR---~~~~~s~~T~I~~~TdGiLLr~l~---~d~~L~~~~~IIIDEaH----ERsL~~D~LL~lLk~il~~-rpdLKlI 215 (1283)
T TIGR01967 147 VR---FHDQVSSNTLVKLMTDGILLAETQ---QDRFLSRYDTIIIDEAH----ERSLNIDFLLGYLKQLLPR-RPDLKII 215 (1283)
T ss_pred Ec---CCcccCCCceeeeccccHHHHHhh---hCcccccCcEEEEcCcc----hhhccchhHHHHHHHHHhh-CCCCeEE
Confidence 22 222222467999999999954443 35679999999999999 4444555566666666543 4578999
Q ss_pred EecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCCh---HHHHHhhCHHHHHHHHhhh-hcCCCeEEEe
Q 000849 616 ALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF---EARMKAMTKPTYTAIMQHA-KNEKPALVFV 691 (1254)
Q Consensus 616 ~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~-~~~~~~lVF~ 691 (1254)
+||||+ +.+.++++++..+ ++.... +..|+++.+........ ..... .+...+.... ...+++|||+
T Consensus 216 lmSATl-d~~~fa~~F~~ap--vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~----~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 216 ITSATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLE----AILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred EEeCCc-CHHHHHHHhcCCC--EEEECC--CcccceeEEecccccccchhhhHHH----HHHHHHHHHHhhCCCCEEEeC
Confidence 999999 5788999997654 344433 33344444432221110 01111 1122222211 2468999999
Q ss_pred cChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCce
Q 000849 692 PSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIK 771 (1254)
Q Consensus 692 ~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~ 771 (1254)
+++++++.++..|...... ...|..+||+|++++|..+++.+ +..+
T Consensus 287 pg~~EI~~l~~~L~~~~~~--------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~--~~rk 332 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLR--------------------------------HTEILPLYARLSNKEQQRVFQPH--SGRR 332 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCC--------------------------------CcEEEeccCCCCHHHHHHHhCCC--CCce
Confidence 9999999999887542100 23478899999999999997654 3479
Q ss_pred EEEeCcccccccCCc--ceeeccc------------------ccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHH
Q 000849 772 VCVMSSSMCWEVPLT--AHLATGR------------------KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYY 831 (1254)
Q Consensus 772 VLVaT~~l~~Gvdip--~~~V~~~------------------~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~ 831 (1254)
|||||+++++|+|+| .+||+.+ .+.|.++|.||+|||||.+ +|.||.++++.+.
T Consensus 333 IVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~--- 406 (1283)
T TIGR01967 333 IVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF--- 406 (1283)
T ss_pred EEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH---
Confidence 999999999999999 4556433 2368899999999999998 8999999986543
Q ss_pred HHhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhH
Q 000849 832 KKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLE 911 (1254)
Q Consensus 832 ~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~ 911 (1254)
..+.....| ..+...|...++...+.|. .+..+ |.+...|+ .+.+++++..|.
T Consensus 407 ~~~~~~~~P--EIlR~~L~~viL~l~~lg~-~di~~--------f~fldpP~----------------~~~i~~A~~~L~ 459 (1283)
T TIGR01967 407 NSRPEFTDP--EILRTNLASVILQMLALRL-GDIAA--------FPFIEAPD----------------PRAIRDGFRLLE 459 (1283)
T ss_pred HhhhhccCc--ccccccHHHHHHHHHhcCC-CCccc--------ccCCCCCC----------------HHHHHHHHHHHH
Confidence 333222222 2334445555554444432 22111 21222222 356899999999
Q ss_pred HCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHH
Q 000849 912 ATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEE 980 (1254)
Q Consensus 912 ~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~ 980 (1254)
..|+|+.++ +...+|++|+.||.++++|..+++++.+....| ..+++.+.|.-++ .+...++.++.
T Consensus 460 ~LGAld~~~-~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gc-l~e~l~IaA~Ls~-~dp~~~p~~~~ 525 (1283)
T TIGR01967 460 ELGALDDDE-AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGC-LQEVLIIASALSI-QDPRERPMEKQ 525 (1283)
T ss_pred HCCCCCCCC-CCccccHHHHHHhhcCCChHHHHHHHHhhhcCC-HHHHHHHHHHHcC-CCcCCCcchhH
Confidence 999996432 236789999999999999999999998776555 4556655554443 45555555443
No 60
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=7.5e-34 Score=329.32 Aligned_cols=325 Identities=23% Similarity=0.318 Sum_probs=247.6
Q ss_pred hHHHHHHHhhcccCCChHHHHHHhhC------CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHH
Q 000849 439 NVLVAALSRKLMFARLPAKQRITAAL------PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEAL 512 (1254)
Q Consensus 439 n~lv~~~~~~~~f~~~~~Q~~~~~~i------~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~L 512 (1254)
+-++..|.++|||++|.+|++++++| +.+|..+++|..|||||+++.++++..+.. +. ++..++||.-|
T Consensus 249 ~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~--Q~ALMAPTEIL 323 (677)
T COG1200 249 GELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GY--QAALMAPTEIL 323 (677)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CC--eeEEeccHHHH
Confidence 45788899999999999999999999 466789999999999999999999998887 44 99999999999
Q ss_pred HHHHHHHHHHhhccccCcEEEEeccccccchh-----hcc--cCcEEEEcHhhHHHHHHhhhcccccceeeEEEeccccc
Q 000849 513 AKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 585 (1254)
Q Consensus 513 a~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~--~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~ 585 (1254)
|.|.+..+.+.|++. |++|..++|......+ .+. ..+|+|+|-.-+ ++...+.+++++|+||-|+
T Consensus 324 A~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-------Qd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 324 AEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-------QDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-------hcceeecceeEEEEecccc
Confidence 999999999999886 9999999998775533 222 359999995432 3456789999999999998
Q ss_pred ccCCCccHHHHHHHHHHHHHhhcCC-CcEEEEecCCC-CChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChH
Q 000849 586 IGGQGGPVLEVIVARMRYIASQVEN-KIRIVALSTSL-ANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFE 663 (1254)
Q Consensus 586 l~~~~g~~~e~~~~~l~~~~~~~~~-~~rii~lSATl-~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~ 663 (1254)
++ .-.|. .+..+ +. .+.++.||||+ |..-.+..|-+.+...+-..++...|+.-.. .. ...
T Consensus 396 FG---------V~QR~-~L~~K-G~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~--i~--~~~-- 458 (677)
T COG1200 396 FG---------VHQRL-ALREK-GEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVV--IP--HER-- 458 (677)
T ss_pred cc---------HHHHH-HHHHh-CCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEE--ec--ccc--
Confidence 87 22232 23333 33 57889999996 3444455555555555556666666654222 11 111
Q ss_pred HHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHh-
Q 000849 664 ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATL- 742 (1254)
Q Consensus 664 ~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l- 742 (1254)
...+++.+.+.+.+++++.|.|+-.++.+.+.-.-... ....|+..+
T Consensus 459 ------~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~--------------------------~~~~L~~~~~ 506 (677)
T COG1200 459 ------RPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEE--------------------------LYEELKSFLP 506 (677)
T ss_pred ------HHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHH--------------------------HHHHHHHHcc
Confidence 13355667666789999999999988776433111000 002233333
Q ss_pred hccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee--cccccCCHHHHHHhhcccCCCCCCCCceE
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA--TGRKMLILTTLLQMMGHAGRPLLDNSEKC 819 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V--~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~ 819 (1254)
+..|+.+||.|+.++++.|+++|++|+++|||||.+.+.|||+| +.+. ...+.+..+++.|-.||+||.+. .+.|
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~--qSyC 584 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL--QSYC 584 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc--ceEE
Confidence 55699999999999999999999999999999999999999999 3332 44556899999999999999876 8999
Q ss_pred EEEccCCc
Q 000849 820 VILCHAPH 827 (1254)
Q Consensus 820 iil~~~~~ 827 (1254)
++++.++.
T Consensus 585 ~Ll~~~~~ 592 (677)
T COG1200 585 VLLYKPPL 592 (677)
T ss_pred EEEeCCCC
Confidence 99998776
No 61
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.4e-33 Score=352.71 Aligned_cols=317 Identities=18% Similarity=0.209 Sum_probs=235.2
Q ss_pred chHHHHHHHhhcccCCChHHHHHHhhCCc------ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHH
Q 000849 438 DNVLVAALSRKLMFARLPAKQRITAALPN------IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEA 511 (1254)
Q Consensus 438 ~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~------~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~ 511 (1254)
+.-++..|...+||++++.|.+++.++.+ +++++++||||||||.+|++|++..+.. +. +++|++||++
T Consensus 437 ~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvPT~~ 511 (926)
T TIGR00580 437 DLEWQQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVPTTL 511 (926)
T ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeCcHH
Confidence 34566778889999999999999999954 4789999999999999999999988766 34 9999999999
Q ss_pred HHHHHHHHHHHhhccccCcEEEEeccccccch-----hhcc--cCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccc
Q 000849 512 LAKQRYCDWERKFGKELGMCVVELTVETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 584 (1254)
Q Consensus 512 La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~-----~~~~--~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH 584 (1254)
||.|+++.+++.++.. ++++..++|...... +.+. +++|+|+||..+ .+ ...+.+++++||||+|
T Consensus 512 LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~---~v~f~~L~llVIDEah 583 (926)
T TIGR00580 512 LAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QK---DVKFKDLGLLIIDEEQ 583 (926)
T ss_pred HHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hC---CCCcccCCEEEeeccc
Confidence 9999999999988775 889999988765321 1122 469999999533 22 3457899999999999
Q ss_pred cccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHH-hhcCCCCeeEecCCCCcccccEEEEeeccCCChH
Q 000849 585 LIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGE-WIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFE 663 (1254)
Q Consensus 585 ~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~-~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~ 663 (1254)
+++. .. ...++ ....++++++||||+. +..+.. +.+.....++..++..| .++...+.....
T Consensus 584 rfgv----~~---~~~L~----~~~~~~~vL~~SATpi-prtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~~---- 646 (926)
T TIGR00580 584 RFGV----KQ---KEKLK----ELRTSVDVLTLSATPI-PRTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYDP---- 646 (926)
T ss_pred ccch----hH---HHHHH----hcCCCCCEEEEecCCC-HHHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecCH----
Confidence 8642 11 12222 2356789999999963 333332 22333223333333322 233333322110
Q ss_pred HHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhh
Q 000849 664 ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLR 743 (1254)
Q Consensus 664 ~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 743 (1254)
..+...+...+..+++++|||++++.++.++..|..... +
T Consensus 647 -------~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p---------------------------------~ 686 (926)
T TIGR00580 647 -------ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVP---------------------------------E 686 (926)
T ss_pred -------HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCC---------------------------------C
Confidence 112333444446789999999999999998877754211 3
Q ss_pred ccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-cccc-cCCHHHHHHhhcccCCCCCCCCceEE
Q 000849 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRK-MLILTTLLQMMGHAGRPLLDNSEKCV 820 (1254)
Q Consensus 744 ~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~-~~s~~~~~Qr~GRaGR~g~d~~G~~i 820 (1254)
..++.+||+|++.+|..+++.|++|+++|||||+++++|+|+| +.+| ..+. .++..+|.||+||+||.|. .|.|+
T Consensus 687 ~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~--~g~ai 764 (926)
T TIGR00580 687 ARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK--KAYAY 764 (926)
T ss_pred CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC--CeEEE
Confidence 4689999999999999999999999999999999999999999 5554 4443 3688899999999999986 89999
Q ss_pred EEccCC
Q 000849 821 ILCHAP 826 (1254)
Q Consensus 821 il~~~~ 826 (1254)
+++...
T Consensus 765 ll~~~~ 770 (926)
T TIGR00580 765 LLYPHQ 770 (926)
T ss_pred EEECCc
Confidence 998754
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.1e-34 Score=353.88 Aligned_cols=326 Identities=20% Similarity=0.274 Sum_probs=226.8
Q ss_pred hHHHHHHHhhcccCCChHHHHHHhhCCc------ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHH
Q 000849 439 NVLVAALSRKLMFARLPAKQRITAALPN------IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEAL 512 (1254)
Q Consensus 439 n~lv~~~~~~~~f~~~~~Q~~~~~~i~~------~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~L 512 (1254)
+-.+.+|.+.+||++++.|++++.+|.. ++.++++||||||||.+|++|++..+.. +. +++|++||++|
T Consensus 222 ~~~~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~--qvlilaPT~~L 296 (630)
T TIGR00643 222 EELLTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GY--QVALMAPTEIL 296 (630)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CC--cEEEECCHHHH
Confidence 3566778899999999999999999943 4678999999999999999999988765 44 89999999999
Q ss_pred HHHHHHHHHHhhccccCcEEEEeccccccchh-----hcc--cCcEEEEcHhhHHHHHHhhhcccccceeeEEEeccccc
Q 000849 513 AKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 585 (1254)
Q Consensus 513 a~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~--~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~ 585 (1254)
|.|+++.+++.++.. |+++..++|+.....+ .+. +++|+|+||+.+. ....+.+++++||||+|+
T Consensus 297 A~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-------~~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 297 AEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-------EKVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-------ccccccccceEEEechhh
Confidence 999999999877765 8999999998765432 122 4599999998762 123478999999999998
Q ss_pred ccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHH
Q 000849 586 IGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEA 664 (1254)
Q Consensus 586 l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~ 664 (1254)
++... ...+...... ....++++||||+... ..+..+-......+...+.... ++...+... ...
T Consensus 369 fg~~q-------r~~l~~~~~~-~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~--~i~~~~~~~--~~~-- 434 (630)
T TIGR00643 369 FGVEQ-------RKKLREKGQG-GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRK--PITTVLIKH--DEK-- 434 (630)
T ss_pred ccHHH-------HHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCC--ceEEEEeCc--chH--
Confidence 75311 0111111100 1267899999996432 2222221111111111222222 233222211 111
Q ss_pred HHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHH-hh
Q 000849 665 RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRAT-LR 743 (1254)
Q Consensus 665 ~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~-l~ 743 (1254)
...+..+.+.+..+++++|||+..++.+.+...-. +.+ ...|.+. -+
T Consensus 435 ------~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a------------------~~~--------~~~L~~~~~~ 482 (630)
T TIGR00643 435 ------DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAA------------------EAL--------YERLKKAFPK 482 (630)
T ss_pred ------HHHHHHHHHHHHhCCcEEEEEccccccccchHHHH------------------HHH--------HHHHHhhCCC
Confidence 33455565655788999999998765443210000 000 0111111 14
Q ss_pred ccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-cee-eccccc-CCHHHHHHhhcccCCCCCCCCceEE
Q 000849 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHL-ATGRKM-LILTTLLQMMGHAGRPLLDNSEKCV 820 (1254)
Q Consensus 744 ~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~-V~~~~~-~s~~~~~Qr~GRaGR~g~d~~G~~i 820 (1254)
..++.+||+|++++|..+++.|++|+++|||||+++++|||+| +.+ |.++.+ .+.+.+.||+||+||.|. .|.|+
T Consensus 483 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~--~g~~i 560 (630)
T TIGR00643 483 YNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDH--QSYCL 560 (630)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCC--CcEEE
Confidence 6799999999999999999999999999999999999999999 444 455544 688999999999999986 89999
Q ss_pred EEccC
Q 000849 821 ILCHA 825 (1254)
Q Consensus 821 il~~~ 825 (1254)
+++..
T Consensus 561 l~~~~ 565 (630)
T TIGR00643 561 LVYKN 565 (630)
T ss_pred EEECC
Confidence 99843
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=315.76 Aligned_cols=349 Identities=20% Similarity=0.235 Sum_probs=240.6
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
.+...|+|.++++.++...... -|| .+.+++|.||||||||++|.+||++.+.+ ++-
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p--------~~~--------------r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-R~v 213 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSP--------PPS--------------RPRDICVNAPTGSGKTLAYVIPIVQLLSS-RPV 213 (620)
T ss_pred cccccchHHHHHHHHHHhhcCC--------CCC--------------CCCceEEecCCCCCceeeehhHHHHHHcc-CCc
Confidence 6788999999999986532200 001 25678888999999999999999999988 444
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--hc------ccCcEEEEcHhhHHHHHHhhhccc
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK--LL------EKGQIIISTPEKWDALSRRWKQRK 570 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~------~~~~Iiv~Tpe~l~~l~~~~~~~~ 570 (1254)
...++++|+|+++|+.|+++.|.+.... .|+.|+.++|..+...+ .+ ...||+|+|||+|.++++.. ...
T Consensus 214 ~~LRavVivPtr~L~~QV~~~f~~~~~~-tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-k~f 291 (620)
T KOG0350|consen 214 KRLRAVVIVPTRELALQVYDTFKRLNSG-TGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-KSF 291 (620)
T ss_pred cceEEEEEeeHHHHHHHHHHHHHHhccC-CceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-CCc
Confidence 5579999999999999999999985555 59999999998764422 11 13399999999998888763 244
Q ss_pred ccceeeEEEecccccccCC-Cc---cHHHHHHHHHH------HHHhh------------------cCCCcEEEEecCCCC
Q 000849 571 YVQQVSLFIIDELHLIGGQ-GG---PVLEVIVARMR------YIASQ------------------VENKIRIVALSTSLA 622 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~-~g---~~~e~~~~~l~------~~~~~------------------~~~~~rii~lSATl~ 622 (1254)
.+++++++||||||++++. +. +.++..+...+ .+..+ ..++...+.+|||+.
T Consensus 292 ~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLs 371 (620)
T KOG0350|consen 292 DLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLS 371 (620)
T ss_pred chhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhh
Confidence 7999999999999999862 21 11111111110 01110 112233566677765
Q ss_pred -ChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHH----HHhhCHH--HHHHHHhhhhcCCCeEEEecChh
Q 000849 623 -NAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEAR----MKAMTKP--TYTAIMQHAKNEKPALVFVPSRK 695 (1254)
Q Consensus 623 -~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~----~~~~~~~--~~~~i~~~~~~~~~~lVF~~s~~ 695 (1254)
++..+.++--..+ .++.... |. +..+..+..... .....++ +|..|.. .+..++|+|+++..
T Consensus 372 qdP~Kl~~l~l~~P-rl~~v~~---~~-----~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 372 QDPSKLKDLTLHIP-RLFHVSK---PL-----IGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVS 440 (620)
T ss_pred cChHHHhhhhcCCC-ceEEeec---cc-----ceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchH
Confidence 3333333211111 1111100 00 000000000000 0011122 2333322 57889999999999
Q ss_pred hHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 000849 696 YARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVM 775 (1254)
Q Consensus 696 ~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVa 775 (1254)
.+.+++..|.-..... ...+..+.|+++...|.+.++.|..|.++||||
T Consensus 441 sa~Rl~~~L~v~~~~~-------------------------------~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIc 489 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSD-------------------------------NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLIC 489 (620)
T ss_pred HHHHHHHHHHHHhccc-------------------------------cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEe
Confidence 9999998886332221 234556899999999999999999999999999
Q ss_pred CcccccccCCc--ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhc
Q 000849 776 SSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836 (1254)
Q Consensus 776 T~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~ 836 (1254)
|++++||+|+. ..+++|+.|.+...|+||+||++|+|+ .|.|+.+....+...|.++++
T Consensus 490 SD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq--~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 490 SDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQ--DGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred hhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccC--CceEEEeeccccchHHHHHHH
Confidence 99999999999 455599999999999999999999998 899999999888888888765
No 64
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-34 Score=300.53 Aligned_cols=332 Identities=16% Similarity=0.173 Sum_probs=233.6
Q ss_pred HHHHhcc-CCCcChHHHHHHHHHhcC-CchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHH
Q 000849 412 YEALYQN-YKLFNPIQTQVFAVLYNT-EDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAIL 489 (1254)
Q Consensus 412 ~~~~~~~-~~~~~~~Q~~~~~~~~~~-~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il 489 (1254)
++.+|.- |..|+.||..++|.++.. ..|++.. +..|+|||.+|.+.||
T Consensus 102 lkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQ------------------------------sqsGtGKTaaFvL~ML 151 (477)
T KOG0332|consen 102 LKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQ------------------------------SQSGTGKTAAFVLTML 151 (477)
T ss_pred HhHHHHhccCCcchHHHhhcchhhcCCchhhhhh------------------------------hcCCCchhHHHHHHHH
Confidence 3344433 999999999999998865 3477777 9999999999999999
Q ss_pred HHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcc
Q 000849 490 RNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQR 569 (1254)
Q Consensus 490 ~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~ 569 (1254)
.+..-. ...|.++|++|+|+||.|+.+.+.+ +|+..+++..+..-+........-..+|+++||+.+.+++.+.. .
T Consensus 152 srvd~~--~~~PQ~iCLaPtrELA~Q~~eVv~e-MGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~ 227 (477)
T KOG0332|consen 152 SRVDPD--VVVPQCICLAPTRELAPQTGEVVEE-MGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-C 227 (477)
T ss_pred HhcCcc--ccCCCceeeCchHHHHHHHHHHHHH-hcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-h
Confidence 876652 2345899999999999999998886 77776666666555443222222245999999999977766533 2
Q ss_pred cccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCccc
Q 000849 570 KYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPV 648 (1254)
Q Consensus 570 ~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v 648 (1254)
..+..++.+|+|||+.+.+.+|..=. -.++. ...+++.|++++|||..+. ..++.-+-.+...++--.....-.
T Consensus 228 id~~kikvfVlDEAD~Mi~tqG~~D~--S~rI~---~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~ 302 (477)
T KOG0332|consen 228 IDLEKIKVFVLDEADVMIDTQGFQDQ--SIRIM---RSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD 302 (477)
T ss_pred hChhhceEEEecchhhhhhccccccc--chhhh---hhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc
Confidence 35789999999999999886653322 12222 2346799999999998543 223222211111111101110001
Q ss_pred ccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhh
Q 000849 649 PLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEP 728 (1254)
Q Consensus 649 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~ 728 (1254)
++...+ .......+++..+. .+|.. -.-+++||||.|++.+..++..+...
T Consensus 303 ~IkQly--v~C~~~~~K~~~l~-~lyg~-----~tigqsiIFc~tk~ta~~l~~~m~~~--------------------- 353 (477)
T KOG0332|consen 303 NIKQLY--VLCACRDDKYQALV-NLYGL-----LTIGQSIIFCHTKATAMWLYEEMRAE--------------------- 353 (477)
T ss_pred chhhhe--eeccchhhHHHHHH-HHHhh-----hhhhheEEEEeehhhHHHHHHHHHhc---------------------
Confidence 111111 11111122221111 12222 34578999999999999999887542
Q ss_pred HHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-ccccc------CCHHH
Q 000849 729 HVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKM------LILTT 800 (1254)
Q Consensus 729 ~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~------~s~~~ 800 (1254)
|+.|..+||.|..++|..+.+.|+.|..+|||+|++++||+|++ +.+| +|+.| -+.+.
T Consensus 354 --------------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~et 419 (477)
T KOG0332|consen 354 --------------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYET 419 (477)
T ss_pred --------------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHH
Confidence 67899999999999999999999999999999999999999999 5555 77776 57899
Q ss_pred HHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 801 LLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 801 ~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
|+||+||+||.|. .|.++-+.+..+
T Consensus 420 YlHRiGRtGRFGk--kG~a~n~v~~~~ 444 (477)
T KOG0332|consen 420 YLHRIGRTGRFGK--KGLAINLVDDKD 444 (477)
T ss_pred HHHHhcccccccc--cceEEEeecccC
Confidence 9999999999997 899999888665
No 65
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-35 Score=321.84 Aligned_cols=341 Identities=18% Similarity=0.204 Sum_probs=239.7
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhc--
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRAS-- 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~-- 496 (1254)
|..|++||+.++|.+..++..++-. |.||||||++|-+||+..+.+.+
T Consensus 201 Fs~Pt~IQsl~lp~ai~gk~DIlGa------------------------------AeTGSGKTLAFGIPiv~~l~~~s~~ 250 (731)
T KOG0347|consen 201 FSRPTEIQSLVLPAAIRGKVDILGA------------------------------AETGSGKTLAFGIPIVERLLESSDD 250 (731)
T ss_pred CCCCccchhhcccHhhccchhcccc------------------------------cccCCCceeeecchhhhhhhhccch
Confidence 9999999999999999986667666 99999999999999998554421
Q ss_pred -------CCCCcE--EEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccc--hhhc-ccCcEEEEcHhhHHHHHH
Q 000849 497 -------ETGVMR--AVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD--LKLL-EKGQIIISTPEKWDALSR 564 (1254)
Q Consensus 497 -------~~~~~~--vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~-~~~~Iiv~Tpe~l~~l~~ 564 (1254)
....++ ++|++|||+||.|+.+.+.... ...++++..++|+.... .+.+ ..++|+|+|||+|-.++.
T Consensus 251 s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~-~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~ 329 (731)
T KOG0347|consen 251 SQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIA-EKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIE 329 (731)
T ss_pred HhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhc-cccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHH
Confidence 111234 9999999999999999998744 45699999999997654 3444 356999999999977776
Q ss_pred hhhc-ccccceeeEEEecccccccCCCccHHHHHHHHHHHHH-hhcCCCcEEEEecCCCCCh--HHHHHhhcCC-CC---
Q 000849 565 RWKQ-RKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIA-SQVENKIRIVALSTSLANA--KDLGEWIGAS-SH--- 636 (1254)
Q Consensus 565 ~~~~-~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~-~~~~~~~rii~lSATl~~~--~~l~~~l~~~-~~--- 636 (1254)
.... -..+.+++++|+||+|+|.++ | +++.+-..++.+. ++.....|.+.+|||+.-. ..+..--... ..
T Consensus 330 e~n~~l~~~k~vkcLVlDEaDRmvek-g-hF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~ 407 (731)
T KOG0347|consen 330 EDNTHLGNFKKVKCLVLDEADRMVEK-G-HFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDEL 407 (731)
T ss_pred hhhhhhhhhhhceEEEEccHHHHhhh-c-cHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhh
Confidence 5332 235889999999999999953 2 2333333333333 3345678999999998621 1111000000 00
Q ss_pred -----eeEecCCCCcccccEEEEeeccCCChHHHHH-hh------CHH--HHHHHHhhhhcCCCeEEEecChhhHHHHHH
Q 000849 637 -----GVFNFPPGVRPVPLEIQIQGVDITNFEARMK-AM------TKP--TYTAIMQHAKNEKPALVFVPSRKYARLTAV 702 (1254)
Q Consensus 637 -----~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~-~~------~~~--~~~~i~~~~~~~~~~lVF~~s~~~~~~la~ 702 (1254)
.+.. .-.++..|.- +...........+. .. .+. +|-.+. .-.+++|||||+...+.+++-
T Consensus 408 ~~kiq~Lmk-~ig~~~kpki--iD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~---ryPGrTlVF~NsId~vKRLt~ 481 (731)
T KOG0347|consen 408 NAKIQHLMK-KIGFRGKPKI--IDLTPQSATASTLTESLIECPPLEKDLYLYYFLT---RYPGRTLVFCNSIDCVKRLTV 481 (731)
T ss_pred hHHHHHHHH-HhCccCCCee--EecCcchhHHHHHHHHhhcCCccccceeEEEEEe---ecCCceEEEechHHHHHHHHH
Confidence 0000 0001111100 00000000000000 00 000 000111 236789999999999998886
Q ss_pred HHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccc
Q 000849 703 DLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782 (1254)
Q Consensus 703 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~G 782 (1254)
.|.. ++.....+|+.|.+.+|.+.++.|++..-.|||||++++||
T Consensus 482 ~L~~-----------------------------------L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARG 526 (731)
T KOG0347|consen 482 LLNN-----------------------------------LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARG 526 (731)
T ss_pred HHhh-----------------------------------cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhcc
Confidence 5532 24456779999999999999999999999999999999999
Q ss_pred cCCc--ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhh
Q 000849 783 VPLT--AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFL 835 (1254)
Q Consensus 783 vdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l 835 (1254)
+||| .|||+|..|.+..-|+||.||+.|++. .|..+++|.+.+...|.++.
T Consensus 527 LDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~--~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 527 LDIPGVQHVIHYQVPRTSEIYVHRSGRTARANS--EGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred CCCCCcceEEEeecCCccceeEecccccccccC--CCeEEEEeChHHhHHHHHHH
Confidence 9999 799999999999999999999999987 89999999999988887764
No 66
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5e-36 Score=369.11 Aligned_cols=346 Identities=32% Similarity=0.433 Sum_probs=267.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|.+||++|++|.|+||||||||||||||||++|||+||++||+..| +.++++.||+||+|||||||+|+.|+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g-~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCC-eEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 789999999999999999999999999999999999999999999999555 9999999999999999999999999999
Q ss_pred EEecC-CcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcCchhH
Q 000849 81 IITGH-SELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITL 159 (1254)
Q Consensus 81 i~~~~-~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~~~~ 159 (1254)
|+++. ++.+++.+......|. + +.+.+.+..|.+..++++.+.+++++|+..||+|.|+..||.+|+..
T Consensus 403 i~~~~~~~~~~~~~~~~~~~~e-~-~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~-------- 472 (766)
T COG1204 403 ILATSHDELEYLAELYIQSEPE-P-IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEG-------- 472 (766)
T ss_pred EEecCccchhHHHHHhhccCcc-h-HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhcccc--------
Confidence 99955 5555555555554442 2 44455555599999999999999999999999999999999988842
Q ss_pred HHHHHHHHHHHHHHhhhcCcccccCccCceeec-----------------------------------------------
Q 000849 160 GERITDLIHTAANVLDRNNLVKYGRKSGYFQSE----------------------------------------------- 192 (1254)
Q Consensus 160 ~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t----------------------------------------------- 192 (1254)
...+.+..++..|++++++ .+.....+.+|
T Consensus 473 --~~~~~i~~~~~~L~~~~~~-~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~ 549 (766)
T COG1204 473 --MLREEILASLRYLEENGLI-LDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMP 549 (766)
T ss_pred --chHHHHHHHHHHHHhccce-eeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchh
Confidence 2255788999999998732 33345667776
Q ss_pred -----ccHHH--HHHHhccCCccCCCCCC---------ChhHHHHHHHHHHHccccc----cCccccc-cC-----cHHH
Q 000849 193 -----KIKME--LAKLLDRVPIPVKESLE---------EPSAKINVLLQTYISQLKL----EGLSLTS-DM-----SAGR 246 (1254)
Q Consensus 193 -----~e~~~--l~~l~~~~~~~~~~~~~---------~~~~Kv~~Llq~~is~~~~----~~~~l~~-D~-----~a~r 246 (1254)
.+..+ ...+++..++....... ..+.|+...+-+|+++.+. +.|.... |+ ++.|
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w 629 (766)
T COG1204 550 IKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEW 629 (766)
T ss_pred hhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhh
Confidence 00001 11111122221111111 2345677778888887776 4555554 54 8889
Q ss_pred H-------HHHHHHHHHhcCcHHHH-HHHHHHHHHHHhccC-CCCCcccccCCCCHHHHHHHHhcCCCCC-------C--
Q 000849 247 L-------SRALFEIVLKRGWSQLA-EKALKLSKMVTKRMW-SVQTPLRQFNGIPNEILMKLEKKDFFLG-------K-- 308 (1254)
Q Consensus 247 i-------~~a~~ei~~~~~~~~~a-~~~l~l~~~i~~~~w-~~~~~L~q~~~i~~~~~~~l~~~~~~~g-------~-- 308 (1254)
+ +.++-..+...+-+..- ...-.+..++++|+. ++..+|..++++++.++++++++|...- .
T Consensus 630 ~~~~~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvrar~ly~~g~~~~~~~~~~~~~~ 709 (766)
T COG1204 630 LSADLLALGKAAERLAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPA 709 (766)
T ss_pred hhhhhhhhhhhhhhhHhhhCCCccccccchhhhhhhhcCCChhhhcccccccccchhHHHHHHHhhhccHHHHHhhcChh
Confidence 8 88888877776653322 556678889999999 7889999999999999999999998711 1
Q ss_pred ---CCccccceEEEEEeeeeeecccccCcceEEEEEEEeCCCCeEEEEEeeeecc
Q 000849 309 ---PITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKK 360 (1254)
Q Consensus 309 ---pi~~~~~~~~~~~~~~~~w~~~~~g~~~~f~~~ved~~~~~il~~~~~~l~~ 360 (1254)
|++....++.-.+.+.+.|+...||..+.||..+++.++..++|.+...+..
T Consensus 710 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (766)
T COG1204 710 ELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALILAG 764 (766)
T ss_pred hhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccceecchhhccCC
Confidence 6666666666778889999999999999999999999999999998876643
No 67
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-33 Score=311.73 Aligned_cols=516 Identities=16% Similarity=0.146 Sum_probs=347.7
Q ss_pred HHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe
Q 000849 456 AKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535 (1254)
Q Consensus 456 ~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~ 535 (1254)
.++++++.|..|+++++++.||||||+.....++..-. ..+| .+-|.+|+|..|..++++++..++..+|..|++.
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY--~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGY--ADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccc--ccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 36788899999999999999999999987666554322 3455 8899999999999999999999977767777654
Q ss_pred ccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEE
Q 000849 536 TVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIV 615 (1254)
Q Consensus 536 ~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii 615 (1254)
.--.+ -.-+.+.|-++|.|.| +|....+..+.++++||+|||| +|....+.++..++...+. ..+.++|
T Consensus 436 IRFEd---vT~~~T~IkymTDGiL---LrEsL~d~~L~kYSviImDEAH----ERslNtDilfGllk~~lar-RrdlKli 504 (1042)
T KOG0924|consen 436 IRFED---VTSEDTKIKYMTDGIL---LRESLKDRDLDKYSVIIMDEAH----ERSLNTDILFGLLKKVLAR-RRDLKLI 504 (1042)
T ss_pred EEeee---cCCCceeEEEeccchH---HHHHhhhhhhhheeEEEechhh----hcccchHHHHHHHHHHHHh-hccceEE
Confidence 32111 1113568999999988 6665556679999999999999 8888999999988887765 5699999
Q ss_pred EecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhh-hcCCCeEEEecCh
Q 000849 616 ALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVFVPSR 694 (1254)
Q Consensus 616 ~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~lVF~~s~ 694 (1254)
.+|||+ |++.+++|+|..+ .|+++ .|..|+++.+...+..++.. ...+ +.+.-++ ...+.+|||.+.+
T Consensus 505 VtSATm-~a~kf~nfFgn~p--~f~Ip--GRTyPV~~~~~k~p~eDYVe---aavk---q~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 505 VTSATM-DAQKFSNFFGNCP--QFTIP--GRTYPVEIMYTKTPVEDYVE---AAVK---QAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred Eeeccc-cHHHHHHHhCCCc--eeeec--CCccceEEEeccCchHHHHH---HHHh---hheEeeccCCCCCEEEecCCC
Confidence 999999 9999999999554 44444 45555565554444333221 1111 1111111 3457899999999
Q ss_pred hhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 000849 695 KYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCV 774 (1254)
Q Consensus 695 ~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLV 774 (1254)
+.++.++..+...+........ -+..|..+++.|+..-+.++++....|..+++|
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~-------------------------~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~Iv 628 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPT-------------------------TDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIV 628 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCC-------------------------CceEEEeehhhCchhhhhhhcccCCCCceeEEE
Confidence 9998888777655433211100 134688999999999999999999999999999
Q ss_pred eCcccccccCCc-c-eee-------------cc-----cccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHh
Q 000849 775 MSSSMCWEVPLT-A-HLA-------------TG-----RKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 775 aT~~l~~Gvdip-~-~~V-------------~~-----~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
||++++.++.+| . .|| .| ..|+|.++.-||.|||||.| +|.||.++++. .+...+
T Consensus 629 ATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~--ay~~em 703 (1042)
T KOG0924|consen 629 ATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTED--AYKNEM 703 (1042)
T ss_pred eccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhhh--HHHhhc
Confidence 999999999999 4 444 12 12478899999999999998 89999999853 344556
Q ss_pred hcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHCC
Q 000849 835 LYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATR 914 (1254)
Q Consensus 835 l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g 914 (1254)
+..+.| .....++.+.++...+.| .+|+.+| .| ... ...+.+.+++..|..+|
T Consensus 704 l~stvP--EIqRTNl~nvVLlLkslg----V~dll~F---dF--mD~----------------Pped~~~~sly~Lw~LG 756 (1042)
T KOG0924|consen 704 LPSTVP--EIQRTNLSNVVLLLKSLG----VDDLLKF---DF--MDP----------------PPEDNLLNSLYQLWTLG 756 (1042)
T ss_pred ccCCCc--hhhhcchhhHHHHHHhcC----hhhhhCC---Cc--CCC----------------CHHHHHHHHHHHHHHhh
Confidence 555555 233455555555444444 3454442 22 222 23467889999999999
Q ss_pred CceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHHHHHHHhhcCcccC
Q 000849 915 SIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFA 994 (1254)
Q Consensus 915 ~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~~~~~~~~~ 994 (1254)
+|.- .-.+|++|+-|+.|+++|...++++.+..-.| ..+++.|+|+.+- ..+..|+.|..+-..+.+.
T Consensus 757 Al~~----~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc-~dEilsIvSmLSv-p~VF~rpker~eead~ar~------ 824 (1042)
T KOG0924|consen 757 ALDN----TGQLTPLGRKMVEFPLDPPLSKMLLMAARMGC-SDEILSIVSMLSV-PAVFYRPKEREEEADAARE------ 824 (1042)
T ss_pred cccc----CCccchhhHHhhhCCCCchHHHHHHHHhccCc-HHHHHHHHHHhcc-cceeeccccchhhhhhHHh------
Confidence 9953 45678999999999999999999997655554 5677777665542 4566676666555554332
Q ss_pred CCCCCChHHHHHHHHH---HHhcCCCCCcchHHh---HHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhcc
Q 000849 995 NPKCTDPHVKANALLQ---AHFSARHMEGNLKLD---QEKVLLSASRLLQAMVDVISSNGW-LSLALLAMEVSQMVTQGM 1067 (1254)
Q Consensus 995 ~~~~~~~~~K~~~Llq---a~l~r~~l~~~l~~D---~~~il~~~~rl~~a~~ei~~~~~~-~~~~~~~~~l~q~i~q~~ 1067 (1254)
+|..++.....||+ .|... .-+..--.| ...-+..|.-+=+.+.+|....+. +..+.-.-.+.+||-.|.
T Consensus 825 --Kf~~~~sDhLTlLNVf~qw~~~-~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~dwdivrKCIcs~~ 901 (1042)
T KOG0924|consen 825 --KFQVPESDHLTLLNVFNQWRKN-KYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSDDWDIVRKCICSAY 901 (1042)
T ss_pred --hhcCCCCchhhHHHHHHHHHhc-CCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCchHHHHHHHHHHHH
Confidence 23333333333433 33322 111111111 112344444455566666655442 111123344556666655
Q ss_pred CC
Q 000849 1068 WE 1069 (1254)
Q Consensus 1068 w~ 1069 (1254)
..
T Consensus 902 fh 903 (1042)
T KOG0924|consen 902 FH 903 (1042)
T ss_pred HH
Confidence 43
No 68
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=9.3e-33 Score=354.75 Aligned_cols=317 Identities=17% Similarity=0.204 Sum_probs=233.2
Q ss_pred chHHHHHHHhhcccCCChHHHHHHhhCCc------ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHH
Q 000849 438 DNVLVAALSRKLMFARLPAKQRITAALPN------IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEA 511 (1254)
Q Consensus 438 ~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~------~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~ 511 (1254)
+.....+|..++||++++.|.+++..+.. +++++++||||+|||.+|+.+++..+.. +. +++|++||++
T Consensus 586 ~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~--qvlvLvPT~e 660 (1147)
T PRK10689 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HK--QVAVLVPTTL 660 (1147)
T ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CC--eEEEEeCcHH
Confidence 45677788999999999999999999854 4899999999999999999888776544 44 9999999999
Q ss_pred HHHHHHHHHHHhhccccCcEEEEeccccccchh--h---c--ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccc
Q 000849 512 LAKQRYCDWERKFGKELGMCVVELTVETAMDLK--L---L--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 584 (1254)
Q Consensus 512 La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~---~--~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH 584 (1254)
||.|+++.|++.++.. ++++..++|..+...+ . + ...+|+|+||+.+ +. ...+.+++++||||+|
T Consensus 661 LA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 661 LAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---DVKWKDLGLLIVDEEH 732 (1147)
T ss_pred HHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---CCCHhhCCEEEEechh
Confidence 9999999999888765 7888888876654322 1 1 2469999999744 21 2346789999999999
Q ss_pred cccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC-ChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChH
Q 000849 585 LIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA-NAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFE 663 (1254)
Q Consensus 585 ~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~-~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~ 663 (1254)
+++. .. ..+++ ....+.+++++|||+. +...++.. +.....++..++..+ .++...+..+..
T Consensus 733 rfG~----~~---~e~lk----~l~~~~qvLl~SATpiprtl~l~~~-gl~d~~~I~~~p~~r-~~v~~~~~~~~~---- 795 (1147)
T PRK10689 733 RFGV----RH---KERIK----AMRADVDILTLTATPIPRTLNMAMS-GMRDLSIIATPPARR-LAVKTFVREYDS---- 795 (1147)
T ss_pred hcch----hH---HHHHH----hcCCCCcEEEEcCCCCHHHHHHHHh-hCCCcEEEecCCCCC-CCceEEEEecCc----
Confidence 8741 11 12222 2356899999999964 33333322 222222333333322 233333222111
Q ss_pred HHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhh
Q 000849 664 ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLR 743 (1254)
Q Consensus 664 ~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 743 (1254)
......+...+..+++++||||+++.++.++..|..... +
T Consensus 796 -------~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p---------------------------------~ 835 (1147)
T PRK10689 796 -------LVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP---------------------------------E 835 (1147)
T ss_pred -------HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC---------------------------------C
Confidence 011223333446688999999999999999887754311 3
Q ss_pred ccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee--cccccCCHHHHHHhhcccCCCCCCCCceEE
Q 000849 744 LGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA--TGRKMLILTTLLQMMGHAGRPLLDNSEKCV 820 (1254)
Q Consensus 744 ~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V--~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~i 820 (1254)
.++..+||+|++++|..+++.|++|+++|||||+++++|+|+| +.+| ....+++..+|+||+||+||.|. .|.|+
T Consensus 836 ~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~--~g~a~ 913 (1147)
T PRK10689 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH--QAYAW 913 (1147)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCC--ceEEE
Confidence 4688999999999999999999999999999999999999999 5555 23345788999999999999987 89999
Q ss_pred EEccCC
Q 000849 821 ILCHAP 826 (1254)
Q Consensus 821 il~~~~ 826 (1254)
+++..+
T Consensus 914 ll~~~~ 919 (1147)
T PRK10689 914 LLTPHP 919 (1147)
T ss_pred EEeCCC
Confidence 998764
No 69
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-32 Score=332.69 Aligned_cols=420 Identities=17% Similarity=0.174 Sum_probs=307.3
Q ss_pred hHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEE
Q 000849 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534 (1254)
Q Consensus 455 ~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~ 534 (1254)
....++++.+.+++++++.||||||||+...+.++..... .++ ++.++.|+|--|..+++++.+.++...|-.|++
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--~~g--~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--IAG--KIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--cCC--eEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 4678899999999999999999999999988887765542 345 899999999999999999999998876777766
Q ss_pred eccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEE
Q 000849 535 LTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRI 614 (1254)
Q Consensus 535 ~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~ri 614 (1254)
..- .+...-.++.|-++|.|.| +|....+..++.+++||+||+| +|....+.++..++.+....+.+.++
T Consensus 129 ~iR---fe~~~s~~Trik~mTdGiL---lrei~~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 129 SIR---FESKVSPRTRIKVMTDGIL---LREIQNDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred EEE---eeccCCCCceeEEeccHHH---HHHHhhCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 432 2222234679999999999 5555567789999999999999 89999999999999988877778999
Q ss_pred EEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhh-hcCCCeEEEecC
Q 000849 615 VALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA-KNEKPALVFVPS 693 (1254)
Q Consensus 615 i~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~lVF~~s 693 (1254)
|.||||+ |.++++++|+..+ ++.. +.|..|+++.+......+.. +...+...+..+. ...+.+|||.+.
T Consensus 199 IimSATl-d~~rfs~~f~~ap--vi~i--~GR~fPVei~Y~~~~~~d~~-----l~~ai~~~v~~~~~~~~GdILvFLpG 268 (845)
T COG1643 199 IIMSATL-DAERFSAYFGNAP--VIEI--EGRTYPVEIRYLPEAEADYI-----LLDAIVAAVDIHLREGSGSILVFLPG 268 (845)
T ss_pred EEEeccc-CHHHHHHHcCCCC--EEEe--cCCccceEEEecCCCCcchh-----HHHHHHHHHHHhccCCCCCEEEECCc
Confidence 9999999 8999999999654 3333 44556666666333322221 1111222222221 457899999999
Q ss_pred hhhHHHHHHHHHH-HhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceE
Q 000849 694 RKYARLTAVDLMI-YSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV 772 (1254)
Q Consensus 694 ~~~~~~la~~L~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~V 772 (1254)
.++.+.+++.|.+ ... -...|..+||.|+.+++.++++.-..|+.+|
T Consensus 269 ~~EI~~~~~~L~~~~l~--------------------------------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKV 316 (845)
T COG1643 269 QREIERTAEWLEKAELG--------------------------------DDLEILPLYGALSAEEQVRVFEPAPGGKRKV 316 (845)
T ss_pred HHHHHHHHHHHHhcccc--------------------------------CCcEEeeccccCCHHHHHhhcCCCCCCcceE
Confidence 9999999988865 110 0235889999999999999999999998899
Q ss_pred EEeCcccccccCCc-ceee-cc------------------cccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHH
Q 000849 773 CVMSSSMCWEVPLT-AHLA-TG------------------RKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832 (1254)
Q Consensus 773 LVaT~~l~~Gvdip-~~~V-~~------------------~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~ 832 (1254)
++||++++.|++|| ...| +. ..+.|.++..||.|||||.+ +|.||.++++ +.|.
T Consensus 317 VlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse---~~~~ 390 (845)
T COG1643 317 VLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSE---EDFL 390 (845)
T ss_pred EEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCH---HHHH
Confidence 99999999999999 4444 11 12378999999999999998 8999999986 3344
Q ss_pred HhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHH
Q 000849 833 KFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 912 (1254)
Q Consensus 833 ~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~ 912 (1254)
.+.....| .-+...|...++..-..|.- ++|..+.+-+.+ -...+..|+..|..
T Consensus 391 ~~~~~t~P--EIlrtdLs~~vL~l~~~G~~-----------------~d~~~f~fld~P-------~~~~i~~A~~~L~~ 444 (845)
T COG1643 391 AFPEFTLP--EILRTDLSGLVLQLKSLGIG-----------------QDIAPFPFLDPP-------PEAAIQAALTLLQE 444 (845)
T ss_pred hcccCCCh--hhhhcchHHHHHHHHhcCCC-----------------CCcccCccCCCC-------ChHHHHHHHHHHHH
Confidence 55554444 22333444433333333321 122222111111 12468889999999
Q ss_pred CCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCcc
Q 000849 913 TRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASAS 967 (1254)
Q Consensus 913 ~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~ 967 (1254)
.|++..+ + .+|++|+.||.++++|.-++++..+-...+ ..+++.+.|.-+
T Consensus 445 LGAld~~--g--~LT~lG~~ms~lpldprLA~mLl~a~~~g~-~~e~~~Ias~Ls 494 (845)
T COG1643 445 LGALDDS--G--KLTPLGKQMSLLPLDPRLARMLLTAPEGGC-LGEAATIASMLS 494 (845)
T ss_pred cCCcCCC--C--CCCHHHHHHHhCCCChHHHHHHHhccccCc-HHHHHHHHHhhc
Confidence 9999643 2 379999999999999999999998666444 444444444433
No 70
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=304.66 Aligned_cols=322 Identities=15% Similarity=0.183 Sum_probs=237.9
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh---
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA--- 495 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~--- 495 (1254)
+.+|||+|.|-+|.++.|++ .|++|-||||||++|.+|++-.....
T Consensus 190 I~~PTpIQvQGlPvvLsGRD-------------------------------mIGIAfTGSGKTlvFvLP~imf~LeqE~~ 238 (610)
T KOG0341|consen 190 IVHPTPIQVQGLPVVLSGRD-------------------------------MIGIAFTGSGKTLVFVLPVIMFALEQEMM 238 (610)
T ss_pred CCCCCceeecCcceEeecCc-------------------------------eeeEEeecCCceEEEeHHHHHHHHHHHhc
Confidence 88999999999999999877 67779999999999999987654432
Q ss_pred ---cCCCCcEEEEEcchHHHHHHHHHHHHHhhccc-----cCcEEEEeccccccch--hhc-ccCcEEEEcHhhHHHHHH
Q 000849 496 ---SETGVMRAVYIAPIEALAKQRYCDWERKFGKE-----LGMCVVELTVETAMDL--KLL-EKGQIIISTPEKWDALSR 564 (1254)
Q Consensus 496 ---~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~-----~~~~v~~~~g~~~~~~--~~~-~~~~Iiv~Tpe~l~~l~~ 564 (1254)
..+.+|..++|+|+|+||.|+++-+...+... ..++...+.|+..... ... ...+|+|+||++|.+++.
T Consensus 239 lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~ 318 (610)
T KOG0341|consen 239 LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLA 318 (610)
T ss_pred CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHH
Confidence 23345789999999999999998877655433 2356667777766442 223 345999999999988877
Q ss_pred hhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCC
Q 000849 565 RWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPP 643 (1254)
Q Consensus 565 ~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~ 643 (1254)
+.. ..+.-.+++.+|||+++.+ .+...+..+++ .+....|.+++|||+|.. +..|-...
T Consensus 319 KK~--~sLd~CRyL~lDEADRmiDmGFEddir~iF~-------~FK~QRQTLLFSATMP~K--IQ~FAkSA--------- 378 (610)
T KOG0341|consen 319 KKI--MSLDACRYLTLDEADRMIDMGFEDDIRTIFS-------FFKGQRQTLLFSATMPKK--IQNFAKSA--------- 378 (610)
T ss_pred Hhh--ccHHHHHHhhhhhHHHHhhccchhhHHHHHH-------HHhhhhheeeeeccccHH--HHHHHHhh---------
Confidence 633 2477889999999999997 34334433433 334678999999999743 33322211
Q ss_pred CCcccccEEEEeeccCCChHHHHHhhCH-HHHHHHHhhh-hcCCCeEEEecChhhHHHHHHHHHHHhhccCccccccccc
Q 000849 644 GVRPVPLEIQIQGVDITNFEARMKAMTK-PTYTAIMQHA-KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLC 721 (1254)
Q Consensus 644 ~~r~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~-~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~ 721 (1254)
-.+|+.+.+.-.+....+.......... ...-.+++.+ ....|+||||..+..+..+.++|.-.
T Consensus 379 LVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlK-------------- 444 (610)
T KOG0341|consen 379 LVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLK-------------- 444 (610)
T ss_pred cccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHc--------------
Confidence 2345544444333333333332222111 1111222332 34678999999999999998876321
Q ss_pred ChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHH
Q 000849 722 SAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILT 799 (1254)
Q Consensus 722 ~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~ 799 (1254)
+..+..+|||-++++|....+.|+.|+-+|||||++++.|+|+| .|+++|+.|-.+.
T Consensus 445 ---------------------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIE 503 (610)
T KOG0341|consen 445 ---------------------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIE 503 (610)
T ss_pred ---------------------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHH
Confidence 45678899999999999999999999999999999999999999 6899999999999
Q ss_pred HHHHhhcccCCCCCCCCceEEEEccCCcH
Q 000849 800 TLLQMMGHAGRPLLDNSEKCVILCHAPHK 828 (1254)
Q Consensus 800 ~~~Qr~GRaGR~g~d~~G~~iil~~~~~~ 828 (1254)
+|+||+||+||.|. .|.+..|.+....
T Consensus 504 NYVHRIGRTGRsg~--~GiATTfINK~~~ 530 (610)
T KOG0341|consen 504 NYVHRIGRTGRSGK--TGIATTFINKNQE 530 (610)
T ss_pred HHHHHhcccCCCCC--cceeeeeecccch
Confidence 99999999999997 8999998886653
No 71
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=303.77 Aligned_cols=345 Identities=16% Similarity=0.189 Sum_probs=249.0
Q ss_pred CCCCCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeee
Q 000849 394 TELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQL 473 (1254)
Q Consensus 394 ~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~ 473 (1254)
.+-+++++..+.++.+.+ |..||-+|+.++|-++++++ ++..
T Consensus 21 Fe~~gLD~RllkAi~~lG-------~ekpTlIQs~aIplaLEgKD-vvar------------------------------ 62 (569)
T KOG0346|consen 21 FEEFGLDSRLLKAITKLG-------WEKPTLIQSSAIPLALEGKD-VVAR------------------------------ 62 (569)
T ss_pred HHHhCCCHHHHHHHHHhC-------cCCcchhhhcccchhhcCcc-eeee------------------------------
Confidence 344677777776666554 89999999999999999875 6656
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcC----CCCcEEEEEcchHHHHHHHHHHHHHhhccc-cCcEEEEeccccccc---hhh
Q 000849 474 APTGSGKTICAEFAILRNHQRASE----TGVMRAVYIAPIEALAKQRYCDWERKFGKE-LGMCVVELTVETAMD---LKL 545 (1254)
Q Consensus 474 apTGsGKT~~~~l~il~~l~~~~~----~~~~~vl~i~P~r~La~q~~~~~~~~~~~~-~~~~v~~~~g~~~~~---~~~ 545 (1254)
|.||||||.+|++|+++.+..... ..++.+++++|||+||+|++..+.+..... ..+++.-++.+.+.. ...
T Consensus 63 ArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L 142 (569)
T KOG0346|consen 63 ARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL 142 (569)
T ss_pred eccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH
Confidence 999999999999999998876522 225789999999999999999888744332 124444444443322 234
Q ss_pred cccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-
Q 000849 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA- 624 (1254)
Q Consensus 546 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~- 624 (1254)
...++|+|+||+++..++..... ..+..++++|+||||++. .+|. | ..++.+.+.+++..|-++||||+.+.
T Consensus 143 ~d~pdIvV~TP~~ll~~~~~~~~-~~~~~l~~LVvDEADLll-sfGY--e---edlk~l~~~LPr~~Q~~LmSATl~dDv 215 (569)
T KOG0346|consen 143 MDLPDIVVATPAKLLRHLAAGVL-EYLDSLSFLVVDEADLLL-SFGY--E---EDLKKLRSHLPRIYQCFLMSATLSDDV 215 (569)
T ss_pred ccCCCeEEeChHHHHHHHhhccc-hhhhheeeEEechhhhhh-hccc--H---HHHHHHHHhCCchhhheeehhhhhhHH
Confidence 46789999999999777665332 468899999999999998 4442 2 33555556678899999999999743
Q ss_pred HHHHHhhcCCCCeeEecCCCCcccc--cEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHH
Q 000849 625 KDLGEWIGASSHGVFNFPPGVRPVP--LEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAV 702 (1254)
Q Consensus 625 ~~l~~~l~~~~~~~~~~~~~~r~v~--l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~ 702 (1254)
..+...+-..+ .+..+....-|.+ +..+.......+..-.... +.+.---.+++|||+||.+.|.++--
T Consensus 216 ~~LKkL~l~nP-viLkl~e~el~~~dqL~Qy~v~cse~DKflllya--------llKL~LI~gKsliFVNtIdr~YrLkL 286 (569)
T KOG0346|consen 216 QALKKLFLHNP-VILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYA--------LLKLRLIRGKSLIFVNTIDRCYRLKL 286 (569)
T ss_pred HHHHHHhccCC-eEEEeccccCCCcccceEEEEEeccchhHHHHHH--------HHHHHHhcCceEEEEechhhhHHHHH
Confidence 44444333333 3444444444433 3333333332221111111 11111336799999999999988864
Q ss_pred HHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCc-----
Q 000849 703 DLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSS----- 777 (1254)
Q Consensus 703 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~----- 777 (1254)
.|. -+|....+++|.|+..-|..|++.|..|..+++|||+
T Consensus 287 fLe-----------------------------------qFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~ 331 (569)
T KOG0346|consen 287 FLE-----------------------------------QFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADG 331 (569)
T ss_pred HHH-----------------------------------HhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccch
Confidence 442 2356678899999999999999999999999999999
Q ss_pred ------------------------------ccccccCCc--ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccC
Q 000849 778 ------------------------------SMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHA 825 (1254)
Q Consensus 778 ------------------------------~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~ 825 (1254)
-.++|||+. +.+++++.|.+...|+||+||++|.+. +|.++.|+.+
T Consensus 332 ~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n--~GtalSfv~P 409 (569)
T KOG0346|consen 332 DKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNN--KGTALSFVSP 409 (569)
T ss_pred hhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCC--CCceEEEecc
Confidence 135899999 455599999999999999999999987 8999999987
Q ss_pred CcHH
Q 000849 826 PHKE 829 (1254)
Q Consensus 826 ~~~~ 829 (1254)
.+..
T Consensus 410 ~e~~ 413 (569)
T KOG0346|consen 410 KEEF 413 (569)
T ss_pred hHHh
Confidence 7643
No 72
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-32 Score=321.59 Aligned_cols=330 Identities=21% Similarity=0.307 Sum_probs=253.0
Q ss_pred hHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHH
Q 000849 411 SYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILR 490 (1254)
Q Consensus 411 ~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~ 490 (1254)
.++.+|. |..|++-|.+++..++++++ ++ ++.|||+|||+||.+|.+-
T Consensus 8 ~L~~~fG-y~~FR~gQ~evI~~~l~g~d-~l------------------------------vvmPTGgGKSlCyQiPAll 55 (590)
T COG0514 8 VLKQVFG-YASFRPGQQEIIDALLSGKD-TL------------------------------VVMPTGGGKSLCYQIPALL 55 (590)
T ss_pred HHHHHhC-ccccCCCHHHHHHHHHcCCc-EE------------------------------EEccCCCCcchHhhhHHHh
Confidence 3667776 88999999999999888754 44 4499999999999999872
Q ss_pred HHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-----hccc--CcEEEEcHhhH--HH
Q 000849 491 NHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LLEK--GQIIISTPEKW--DA 561 (1254)
Q Consensus 491 ~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~--~~Iiv~Tpe~l--~~ 561 (1254)
..| -+|||.|..+|...+.+.+.. .|+.+..+.+..+.+.+ .+.. .++++-+||++ ..
T Consensus 56 ------~~G--~TLVVSPLiSLM~DQV~~l~~-----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~ 122 (590)
T COG0514 56 ------LEG--LTLVVSPLISLMKDQVDQLEA-----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPR 122 (590)
T ss_pred ------cCC--CEEEECchHHHHHHHHHHHHH-----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChH
Confidence 245 799999999999999998886 48888888887554422 2223 49999999998 22
Q ss_pred HHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCCCCeeE
Q 000849 562 LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGASSHGVF 639 (1254)
Q Consensus 562 l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~~~~~~ 639 (1254)
+.+... -..+.+++|||||+++ ++|+.+..-..++..+...++ +++++++|||-++. .|+.+-|+.....++
T Consensus 123 f~~~L~----~~~i~l~vIDEAHCiS-qWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~ 196 (590)
T COG0514 123 FLELLK----RLPISLVAIDEAHCIS-QWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIF 196 (590)
T ss_pred HHHHHH----hCCCceEEechHHHHh-hcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceE
Confidence 222221 4578999999999999 777777777777777766655 88999999998654 788888888765444
Q ss_pred ecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHh-hhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccc
Q 000849 640 NFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQ-HAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718 (1254)
Q Consensus 640 ~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~ 718 (1254)
.-.. .||. +...+.... +..... . .+.+ .-...++.||||.||+.++.+|+.|...
T Consensus 197 ~~sf-dRpN-i~~~v~~~~--~~~~q~------~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~----------- 253 (590)
T COG0514 197 RGSF-DRPN-LALKVVEKG--EPSDQL------A--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN----------- 253 (590)
T ss_pred EecC-CCch-hhhhhhhcc--cHHHHH------H--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC-----------
Confidence 3222 2331 111111110 111111 1 2221 1145677999999999999999888532
Q ss_pred cccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-c-eeecccccC
Q 000849 719 LLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-A-HLATGRKML 796 (1254)
Q Consensus 719 ~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~-~~V~~~~~~ 796 (1254)
+..++.|||||+.++|..+.++|..++++|+|||.++++|||-| + .||+++.|.
T Consensus 254 ------------------------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~ 309 (590)
T COG0514 254 ------------------------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG 309 (590)
T ss_pred ------------------------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC
Confidence 45789999999999999999999999999999999999999999 4 455999999
Q ss_pred CHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCCcc
Q 000849 797 ILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFP 840 (1254)
Q Consensus 797 s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~p 840 (1254)
|+++|.|-+|||||.|. +..|++++.+.+......++....|
T Consensus 310 s~EsYyQE~GRAGRDG~--~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 310 SIESYYQETGRAGRDGL--PAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred CHHHHHHHHhhccCCCC--cceEEEeeccccHHHHHHHHHhhcc
Confidence 99999999999999997 9999999999998888888877666
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=7.8e-32 Score=337.03 Aligned_cols=352 Identities=17% Similarity=0.175 Sum_probs=258.7
Q ss_pred HHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHH
Q 000849 442 VAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE 521 (1254)
Q Consensus 442 v~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~ 521 (1254)
...|..++++.++.+|.++++.+...+.+||++|||||||.+|++||+..+.+ .+.. ++||+.||+|||+++.++++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-~~~a--~AL~lYPtnALa~DQ~~rl~ 136 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-DPSA--RALLLYPTNALANDQAERLR 136 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-CcCc--cEEEEechhhhHhhHHHHHH
Confidence 34455566666777777777777777778888999999999999999999998 4555 89999999999999999999
Q ss_pred Hhhcccc-CcEEEEeccccccchhh---cccCcEEEEcHhhHHH-HHHhhhc-ccccceeeEEEecccccccCCCccHHH
Q 000849 522 RKFGKEL-GMCVVELTVETAMDLKL---LEKGQIIISTPEKWDA-LSRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVLE 595 (1254)
Q Consensus 522 ~~~~~~~-~~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~-l~~~~~~-~~~l~~v~liIiDEaH~l~~~~g~~~e 595 (1254)
+...... ++.+..++||+....+. ...++|++|||.+|.. +++.... ...+.++++||+||+|.+-.-+|..+.
T Consensus 137 ~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA 216 (851)
T COG1205 137 ELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVA 216 (851)
T ss_pred HHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHH
Confidence 8766652 48899999999887662 4567999999999977 4444322 225778999999999999988999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHH--HhhCHHH
Q 000849 596 VIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARM--KAMTKPT 673 (1254)
Q Consensus 596 ~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~--~~~~~~~ 673 (1254)
.++.|++.++...+.+.++|++|||+.|+.+++.-+........ +..+..|-.....+...+........ .......
T Consensus 217 ~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~ 295 (851)
T COG1205 217 LLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAEL 295 (851)
T ss_pred HHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHH
Confidence 99999999999888899999999999999776654443332221 23333333333333222211111110 0001111
Q ss_pred HHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCC
Q 000849 674 YTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGL 753 (1254)
Q Consensus 674 ~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l 753 (1254)
-..+...+.++-++|+|+.+++.++.+...........+ . .+...+..|+|+|
T Consensus 296 ~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~--------------------------~l~~~v~~~~~~~ 348 (851)
T COG1205 296 ATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-G--------------------------KLLDAVSTYRAGL 348 (851)
T ss_pred HHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-h--------------------------hhhhheeeccccC
Confidence 112223336889999999999999988754433322211 0 1234688999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccC-CHHHHHHhhcccCCCCCCCCceEEEEccCC
Q 000849 754 NKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKML-ILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826 (1254)
Q Consensus 754 ~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~-s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~ 826 (1254)
..++|.+++..|++|++.++++|++++-|+|+- ..+|....|. +..++.||.|||||.++ .+..+++...+
T Consensus 349 ~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~--~~l~~~v~~~~ 422 (851)
T COG1205 349 HREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ--ESLVLVVLRSD 422 (851)
T ss_pred CHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC--CceEEEEeCCC
Confidence 999999999999999999999999999999999 4445555565 99999999999999984 55555555533
No 74
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2e-31 Score=324.32 Aligned_cols=391 Identities=15% Similarity=0.112 Sum_probs=247.5
Q ss_pred hHHHHHHhhCCcceeeeeeccCCCchHHHHH---------HHHHHHHHhhc-CCCCcEEEEEcchHHHHHHHHHHHHHhh
Q 000849 455 PAKQRITAALPNIILVLQLAPTGSGKTICAE---------FAILRNHQRAS-ETGVMRAVYIAPIEALAKQRYCDWERKF 524 (1254)
Q Consensus 455 ~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~---------l~il~~l~~~~-~~~~~~vl~i~P~r~La~q~~~~~~~~~ 524 (1254)
..|++++..+..+++++++|+||||||.+.. ++.+..+.... .....++++++|||+||.|+..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 3788899999999999999999999999843 33333332111 1223489999999999999999988765
Q ss_pred cc--ccCcEEEEeccccccch--hhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHH
Q 000849 525 GK--ELGMCVVELTVETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVAR 600 (1254)
Q Consensus 525 ~~--~~~~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~ 600 (1254)
+. ..|..+....|+..... ......+|+++|++.. ...+.++++||+||||.+... + +.++..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~---------l~~L~~v~~VVIDEaHEr~~~-~---DllL~l 313 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT---------LNKLFDYGTVIIDEVHEHDQI-G---DIIIAV 313 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc---------ccccccCCEEEccccccCccc-h---hHHHHH
Confidence 43 23667778888876321 1223568999997531 124789999999999987632 2 233333
Q ss_pred HHHHHhhcCCCcEEEEecCCCC-ChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCC--ChHHHHHhhCHHHHHHH
Q 000849 601 MRYIASQVENKIRIVALSTSLA-NAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDIT--NFEARMKAMTKPTYTAI 677 (1254)
Q Consensus 601 l~~~~~~~~~~~rii~lSATl~-~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~i 677 (1254)
++... +...|+++||||++ +.+.+.+|++... .+..+.. ...|++..+...... ................+
T Consensus 314 lk~~~---~~~rq~ILmSATl~~dv~~l~~~~~~p~--~I~I~gr-t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L 387 (675)
T PHA02653 314 ARKHI---DKIRSLFLMTATLEDDRDRIKEFFPNPA--FVHIPGG-TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTAL 387 (675)
T ss_pred HHHhh---hhcCEEEEEccCCcHhHHHHHHHhcCCc--EEEeCCC-cCCCeEEEEeecCcccccchhhhHHHHHHHHHHH
Confidence 43332 22358999999997 4567888887442 3333321 123444443221110 00000001011122223
Q ss_pred Hhhh-hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHH
Q 000849 678 MQHA-KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKS 756 (1254)
Q Consensus 678 ~~~~-~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~ 756 (1254)
.... ..++++||||+++++++.+++.|.... -+..+..+||+|++.
T Consensus 388 ~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---------------------------------~~~~v~~LHG~Lsq~ 434 (675)
T PHA02653 388 KKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---------------------------------PIYDFYIIHGKVPNI 434 (675)
T ss_pred HHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---------------------------------CCceEEeccCCcCHH
Confidence 2221 245789999999999999988775321 024588899999975
Q ss_pred HHHHHHHHH-hcCCceEEEeCcccccccCCc--ceeeccc---cc---------CCHHHHHHhhcccCCCCCCCCceEEE
Q 000849 757 DQEVVSTLF-EAGKIKVCVMSSSMCWEVPLT--AHLATGR---KM---------LILTTLLQMMGHAGRPLLDNSEKCVI 821 (1254)
Q Consensus 757 ~R~~v~~~F-~~g~~~VLVaT~~l~~Gvdip--~~~V~~~---~~---------~s~~~~~Qr~GRaGR~g~d~~G~~ii 821 (1254)
+.+++.| ++|+.+|||||+++++|+|+| .+||+.+ .| .|.++|.||+|||||.+ +|.|+.
T Consensus 435 --eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~---~G~c~r 509 (675)
T PHA02653 435 --DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS---PGTYVY 509 (675)
T ss_pred --HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC---CCeEEE
Confidence 4566666 789999999999999999999 4555554 22 48999999999999995 899999
Q ss_pred EccCCcHHHHHHhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHH
Q 000849 822 LCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSE 901 (1254)
Q Consensus 822 l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~ 901 (1254)
++++.+.. |+...-.+.|...++..-+.|. ...++. | ...|. .+
T Consensus 510 Lyt~~~~~----------pI~ri~~~~L~~~vL~lk~~g~-~~~~~~--~-------ldpP~----------------~~ 553 (675)
T PHA02653 510 FYDLDLLK----------PIKRIDSEFLHNYILYAKYFNL-TLPEDL--F-------VIPSN----------------LD 553 (675)
T ss_pred EECHHHhH----------HHHHHhHHHHHHHHHHHHHcCC-CCcccc--c-------CCCCC----------------HH
Confidence 99865421 1111112224444443334443 222110 1 11121 24
Q ss_pred HHHHHHHHhHHCCCceecCCCCCCcCch--hHHHHhhcCChhhHHHHHh
Q 000849 902 LVENTISDLEATRSIIMEDDMDLCPSNY--GMIASYYYISYKTIECFSS 948 (1254)
Q Consensus 902 ~i~~~l~~L~~~g~i~~~~~~~~~~t~l--G~i~s~~~i~~~T~~~~~~ 948 (1254)
.++.|++.|...|+.. + ..|.+ |+-++.. +.++.+..
T Consensus 554 ~l~~A~~~L~~lga~~--~----~l~~l~~~~~~~~~----~~~k~~~~ 592 (675)
T PHA02653 554 RLRKTEEYIDSFNISI--E----KWYEILSNYYVNML----EYAKIYVK 592 (675)
T ss_pred HHHHHHHHHHHcCCCc--h----hhhhhhccccHHHH----HHhHHHhc
Confidence 6889999999999762 2 46777 7766665 55555553
No 75
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.4e-32 Score=305.93 Aligned_cols=329 Identities=17% Similarity=0.201 Sum_probs=250.0
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|..++++|..|+|.++.+-| +||+|..|+|||++|...+++.+... .
T Consensus 45 f~~ptkiQaaAIP~~~~kmD-------------------------------liVQaKSGTGKTlVfsv~av~sl~~~--~ 91 (980)
T KOG4284|consen 45 FALPTKIQAAAIPAIFSKMD-------------------------------LIVQAKSGTGKTLVFSVLAVESLDSR--S 91 (980)
T ss_pred ccCCCchhhhhhhhhhcccc-------------------------------eEEEecCCCCceEEEEeeeehhcCcc--c
Confidence 88999999999999887644 66669999999999988888777652 3
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecccccc--chhhcccCcEEEEcHhhHHHHHHhhhcccccceee
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 576 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~--~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~ 576 (1254)
..+.+++++|||++|.|+.+.+.+......|.++..+.|++.. +...+++++|+|+|||++..+.... -...++++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~--~~n~s~vr 169 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELG--AMNMSHVR 169 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhc--CCCcccee
Confidence 3458999999999999999999987766779999999998764 4556789999999999998777652 23588999
Q ss_pred EEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCCCCeeEecCCCC-cccccEEE
Q 000849 577 LFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGASSHGVFNFPPGV-RPVPLEIQ 653 (1254)
Q Consensus 577 liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~-r~v~l~~~ 653 (1254)
++|+||||.|.+.. .+-..+..+...++...|++++|||.|.. ..+++|+..+. ++.|.... .-.-+..+
T Consensus 170 lfVLDEADkL~~t~-----sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~d~~L~GikQy 242 (980)
T KOG4284|consen 170 LFVLDEADKLMDTE-----SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNADDVQLFGIKQY 242 (980)
T ss_pred EEEeccHHhhhchh-----hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc--eeecccCCceeechhhe
Confidence 99999999998622 23445555666678899999999999843 55777776553 33332211 11222333
Q ss_pred EeeccCCCh-HHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhh
Q 000849 654 IQGVDITNF-EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSI 732 (1254)
Q Consensus 654 ~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 732 (1254)
+........ ...+..+. ..+..+... -+-.++||||+....|+.+|..|..
T Consensus 243 v~~~~s~nnsveemrlkl-q~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~s-------------------------- 294 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKL-QKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKS-------------------------- 294 (980)
T ss_pred eeeccCCcchHHHHHHHH-HHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhc--------------------------
Confidence 333333222 12222221 122222222 3566899999999999999877632
Q ss_pred cChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCC
Q 000849 733 IQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGR 810 (1254)
Q Consensus 733 ~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR 810 (1254)
-|..+.++.|.|++.+|..+++.++.-..+|||+|+..++|||-| +++| +-+.|.+-..|.||+|||||
T Consensus 295 ---------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgR 365 (980)
T KOG4284|consen 295 ---------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGR 365 (980)
T ss_pred ---------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccc
Confidence 156788899999999999999999999999999999999999999 6555 88899999999999999999
Q ss_pred CCCCCCceEEEEccCCcH
Q 000849 811 PLLDNSEKCVILCHAPHK 828 (1254)
Q Consensus 811 ~g~d~~G~~iil~~~~~~ 828 (1254)
.|. .|.++.++...+.
T Consensus 366 FG~--~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 366 FGA--HGAAVTLLEDERE 381 (980)
T ss_pred ccc--cceeEEEeccchh
Confidence 996 8999988876654
No 76
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=4.4e-32 Score=305.88 Aligned_cols=330 Identities=23% Similarity=0.281 Sum_probs=239.0
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcC-
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASE- 497 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~- 497 (1254)
|..|+|+|.+|+|.+++..+ ++.| ||||||||++|.+|++.++.....
T Consensus 156 F~~Pt~iq~~aipvfl~~r~-~lAc------------------------------apTGsgKtlaf~~Pil~~L~~~~~~ 204 (593)
T KOG0344|consen 156 FDEPTPIQKQAIPVFLEKRD-VLAC------------------------------APTGSGKTLAFNLPILQHLKDLSQE 204 (593)
T ss_pred CCCCCcccchhhhhhhcccc-eEEe------------------------------ccCCCcchhhhhhHHHHHHHHhhcc
Confidence 99999999999999988644 8888 999999999999999999887531
Q ss_pred --CCCcEEEEEcchHHHHHHHHHHHHHhhc-cccCcEEEEeccccccchh----hcccCcEEEEcHhhHHHHHHhhhccc
Q 000849 498 --TGVMRAVYIAPIEALAKQRYCDWERKFG-KELGMCVVELTVETAMDLK----LLEKGQIIISTPEKWDALSRRWKQRK 570 (1254)
Q Consensus 498 --~~~~~vl~i~P~r~La~q~~~~~~~~~~-~~~~~~v~~~~g~~~~~~~----~~~~~~Iiv~Tpe~l~~l~~~~~~~~ 570 (1254)
..+.+++|+.|+|+|+.|++.++.+.-- ...+.++..+........+ ....++|+++||-++..++.......
T Consensus 205 ~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~i 284 (593)
T KOG0344|consen 205 KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNI 284 (593)
T ss_pred cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccc
Confidence 4457999999999999999999987431 2235555555554332221 22456999999999877776644345
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhh-cCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccc
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQ-VENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVP 649 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~-~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~ 649 (1254)
.+..+.++|+||++++.+. +.+..++..+.+. ..+++++-++|||++ ..+.+|............-+.++..
T Consensus 285 dl~~V~~lV~dEaD~lfe~-----~~f~~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa 357 (593)
T KOG0344|consen 285 DLSKVEWLVVDEADLLFEP-----EFFVEQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSA 357 (593)
T ss_pred hhheeeeEeechHHhhhCh-----hhHHHHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhH
Confidence 7899999999999999854 2334444333322 236788899999975 4567777554322222211222111
Q ss_pred c---EEEEeeccCCChHHHHHhhCHHHHHHHHhhh--hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChh
Q 000849 650 L---EIQIQGVDITNFEARMKAMTKPTYTAIMQHA--KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAK 724 (1254)
Q Consensus 650 l---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~ 724 (1254)
. ......... ....+-++.+.+ .-..|++||+.+.+.|..+...|-. |
T Consensus 358 ~~~V~QelvF~gs----------e~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~-----------~------ 410 (593)
T KOG0344|consen 358 NETVDQELVFCGS----------EKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI-----------Y------ 410 (593)
T ss_pred hhhhhhhheeeec----------chhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh-----------c------
Confidence 0 000000000 001111222222 3457899999999999988876620 1
Q ss_pred chhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-cccccCCHHHHH
Q 000849 725 EVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLL 802 (1254)
Q Consensus 725 ~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~ 802 (1254)
-+..|.++||..++.+|..++++|+.|++.||+||+++++|+|+. +.+| +++.|.+..+|+
T Consensus 411 -----------------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syi 473 (593)
T KOG0344|consen 411 -----------------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYI 473 (593)
T ss_pred -----------------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHH
Confidence 145799999999999999999999999999999999999999999 6666 999999999999
Q ss_pred HhhcccCCCCCCCCceEEEEccCCcHHHHH
Q 000849 803 QMMGHAGRPLLDNSEKCVILCHAPHKEYYK 832 (1254)
Q Consensus 803 Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~ 832 (1254)
||+||+||+|. .|.||.|++..+..+..
T Consensus 474 hrIGRtgRag~--~g~Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 474 HRIGRTGRAGR--SGKAITFYTDQDMPRIR 501 (593)
T ss_pred HHhhccCCCCC--CcceEEEeccccchhhh
Confidence 99999999997 99999999987765544
No 77
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2.3e-31 Score=318.89 Aligned_cols=358 Identities=19% Similarity=0.232 Sum_probs=253.9
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhc--
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRAS-- 496 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~-- 496 (1254)
|..++|||.+|+|+++.|++ ||++|-||||||++|.+|++++.....
T Consensus 385 y~k~~~IQ~qAiP~ImsGrd-------------------------------vIgvakTgSGKT~af~LPmirhi~dQr~~ 433 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMSGRD-------------------------------VIGVAKTGSGKTLAFLLPMIRHIKDQRPL 433 (997)
T ss_pred CCCCcchhhhhcchhccCcc-------------------------------eEEeeccCCccchhhhcchhhhhhcCCCh
Confidence 88999999999999998877 666799999999999999998877642
Q ss_pred -CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--h-cccCcEEEEcHhhHHHHHHhhhccc-c
Q 000849 497 -ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK--L-LEKGQIIISTPEKWDALSRRWKQRK-Y 571 (1254)
Q Consensus 497 -~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~-~~~~~Iiv~Tpe~l~~l~~~~~~~~-~ 571 (1254)
.+.+|.+++++|||+|+.|+.+.+++ |...+|+++...+|+...... . ...+.|+||||++..+++.....+. .
T Consensus 434 ~~gdGPi~li~aPtrela~QI~r~~~k-f~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 434 EEGDGPIALILAPTRELAMQIHREVRK-FLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhCCCceEEEEcCCHHHHHHHHHHHHH-HHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 23468999999999999999999987 545579999999998775432 2 2457999999999866665543332 5
Q ss_pred cceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccc
Q 000849 572 VQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVP 649 (1254)
Q Consensus 572 l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~ 649 (1254)
+.++.++|+||+|++.+ .+.|..-.++..+ ++..|.+++|||+|.. +.++.-.-..+..+..-..+.-.-.
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~ 585 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKE 585 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEecc
Confidence 66777999999999996 3444433344333 6789999999999865 4455433333322221111111111
Q ss_pred cEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhH
Q 000849 650 LEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPH 729 (1254)
Q Consensus 650 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 729 (1254)
+...+...... ..++. .+...+.+. ....++||||.+...|..+.+.|.+.
T Consensus 586 V~q~v~V~~~e--~eKf~----kL~eLl~e~-~e~~~tiiFv~~qe~~d~l~~~L~~a---------------------- 636 (997)
T KOG0334|consen 586 VTQVVRVCAIE--NEKFL----KLLELLGER-YEDGKTIIFVDKQEKADALLRDLQKA---------------------- 636 (997)
T ss_pred ceEEEEEecCc--hHHHH----HHHHHHHHH-hhcCCEEEEEcCchHHHHHHHHHHhc----------------------
Confidence 11222111101 11111 112222233 56899999999999999999888532
Q ss_pred HhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcc
Q 000849 730 VSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGH 807 (1254)
Q Consensus 730 ~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GR 807 (1254)
++.+..+|||.++.+|..+++.|++|.+.+||||+++++|+|++ ..+|+|+.|--..+|+||+||
T Consensus 637 -------------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gR 703 (997)
T KOG0334|consen 637 -------------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGR 703 (997)
T ss_pred -------------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcc
Confidence 33455599999999999999999999999999999999999999 566699999889999999999
Q ss_pred cCCCCCCCCceEEEEccCCcHHHHH----HhhcCCcccccccchhHHHHHHHHHhhC
Q 000849 808 AGRPLLDNSEKCVILCHAPHKEYYK----KFLYEAFPVESHLHHFLHDNFNAEIVAG 860 (1254)
Q Consensus 808 aGR~g~d~~G~~iil~~~~~~~~~~----~~l~~~~pies~l~~~l~~~l~~ei~~~ 860 (1254)
+||.|. .|.|+.|..+.+..+.. .+.....|+. .+...+..-+.++...+
T Consensus 704 Tgragr--kg~AvtFi~p~q~~~a~dl~~al~~~~~~~P-~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 704 TGRAGR--KGAAVTFITPDQLKYAGDLCKALELSKQPVP-KLLQALSERFKAKQKAG 757 (997)
T ss_pred cccCCc--cceeEEEeChHHhhhHHHHHHHHHhccCCCc-hHHHHHHHHHHhhhhcc
Confidence 999997 89999999985543322 2222222222 44555555555554443
No 78
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.1e-30 Score=306.41 Aligned_cols=304 Identities=19% Similarity=0.162 Sum_probs=195.2
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecccccc-------
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM------- 541 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~------- 541 (1254)
+++++||||||||.+|++++++.+.. ...+ +++|++|+++|+.|+++++++.|+.. ++.++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~--~ii~v~P~~~L~~q~~~~l~~~f~~~----~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKAD--RVIIALPTRATINAMYRRAKELFGSN----LGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCC--eEEEEeehHHHHHHHHHHHHHHhCcc----cEEeeccHHHHHHhccC
Confidence 47888999999999999999988765 3445 99999999999999999999977642 3333332110
Q ss_pred --------------chhhcccCcEEEEcHhhHHHHHHh-hhcc-cccc--eeeEEEecccccccCCCccHHHHHHHHHHH
Q 000849 542 --------------DLKLLEKGQIIISTPEKWDALSRR-WKQR-KYVQ--QVSLFIIDELHLIGGQGGPVLEVIVARMRY 603 (1254)
Q Consensus 542 --------------~~~~~~~~~Iiv~Tpe~l~~l~~~-~~~~-~~l~--~v~liIiDEaH~l~~~~g~~~e~~~~~l~~ 603 (1254)
+......++|+|+||+++...+.. .... ..+. ..+++|+||+|.+.+..... +...++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~---l~~~l~~ 150 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL---ILAVLEV 150 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH---HHHHHHH
Confidence 000123468999999998544333 1111 1111 23899999999998532112 3333333
Q ss_pred HHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccc-cEEEEeeccCCChHHHHHhhCHHHHHHHHhhhh
Q 000849 604 IASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVP-LEIQIQGVDITNFEARMKAMTKPTYTAIMQHAK 682 (1254)
Q Consensus 604 ~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 682 (1254)
+. ..+.|+++||||+| +.+.+|+...............+.. ...+.......... ........+.+...
T Consensus 151 l~---~~~~~~i~~SATlp--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 151 LK---DNDVPILLMSATLP--KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKV-----GEISSLERLLEFIK 220 (358)
T ss_pred HH---HcCCCEEEEecCch--HHHHHHHhcCCCcccccCCCCccccccccccceeeccccc-----cCHHHHHHHHHHhh
Confidence 32 24689999999997 3455655332110000000000000 00000000000000 01112222333335
Q ss_pred cCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHH-
Q 000849 683 NEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVV- 761 (1254)
Q Consensus 683 ~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v- 761 (1254)
.++++||||++++.|+.++..|..... ...+..+||++++.+|..+
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~---------------------------------~~~~~~~h~~~~~~~r~~~~ 267 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAP---------------------------------EEEIMLLHSRFTEKDRAKKE 267 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcC---------------------------------CCeEEEEECCCCHHHHHHHH
Confidence 688999999999999999988754311 1258899999999999764
Q ss_pred ---HHHHhcCCceEEEeCcccccccCCcc-eeecccccCCHHHHHHhhcccCCCCCC--CCceEEEEccCCc
Q 000849 762 ---STLFEAGKIKVCVMSSSMCWEVPLTA-HLATGRKMLILTTLLQMMGHAGRPLLD--NSEKCVILCHAPH 827 (1254)
Q Consensus 762 ---~~~F~~g~~~VLVaT~~l~~Gvdip~-~~V~~~~~~s~~~~~Qr~GRaGR~g~d--~~G~~iil~~~~~ 827 (1254)
++.|++|..+|||||+++++|+|+|. .+|... .+..+|+||+||+||.|.. ..|.++++...++
T Consensus 268 ~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~~~--~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 268 AELLEEMKKNEKFVIVATQVIEASLDISADVMITEL--APIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHhcCCCCeEEEECcchhceeccCCCEEEEcC--CCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 88999999999999999999999994 444443 5689999999999998854 2358888877654
No 79
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=3.6e-30 Score=313.68 Aligned_cols=325 Identities=17% Similarity=0.141 Sum_probs=203.4
Q ss_pred HHHHhcc---CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHH
Q 000849 412 YEALYQN---YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 412 ~~~~~~~---~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~i 488 (1254)
|.++|.. |. |+|+|.++++.++.|+++++++ ||||||||.++..+.
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~------------------------------apTGSGKTaa~aafl 52 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCS------------------------------TPTGLGKTSIIAAWL 52 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEe------------------------------cCCCCcccHHHHHhh
Confidence 4444444 76 9999999999999887666666 999999999665444
Q ss_pred HHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc----------------------cCcEEEEeccccccchh--
Q 000849 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE----------------------LGMCVVELTVETAMDLK-- 544 (1254)
Q Consensus 489 l~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~----------------------~~~~v~~~~g~~~~~~~-- 544 (1254)
+..... .....+++|++|||+|+.|+++.+.+..... .++++..++|+...+..
T Consensus 53 l~~~~~--~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~ 130 (844)
T TIGR02621 53 LAVEIG--AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWM 130 (844)
T ss_pred cccccc--ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHH
Confidence 422111 1112256678899999999999888743321 14788999999765432
Q ss_pred hc-ccCcEEEEcHhhHHHHHHhhhc-------------ccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCC
Q 000849 545 LL-EKGQIIISTPEKWDALSRRWKQ-------------RKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVEN 610 (1254)
Q Consensus 545 ~~-~~~~Iiv~Tpe~l~~l~~~~~~-------------~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~ 610 (1254)
.+ .+++|||+|++.+ .++... ...+.+++++|+|||| +...+...++.+++.+. ......
T Consensus 131 ~l~~~p~IIVgT~D~i---~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~--rp~~~r 204 (844)
T TIGR02621 131 LDPHRPAVIVGTVDMI---GSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQ--RPPDFL 204 (844)
T ss_pred hcCCCCcEEEECHHHH---cCCccccccccccccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhcc--cCcccc
Confidence 22 4569999997655 222110 0136889999999999 33233223232222210 000012
Q ss_pred CcEEEEecCCCCC-hHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHh-hhhcCCCeE
Q 000849 611 KIRIVALSTSLAN-AKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQ-HAKNEKPAL 688 (1254)
Q Consensus 611 ~~rii~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l 688 (1254)
+.|+++||||++. ..++...+...+.. +..........-..++. .... ......+ ...+.. ....++++|
T Consensus 205 prQtLLFSAT~p~ei~~l~~~~~~~p~~-i~V~~~~l~a~ki~q~v--~v~~-e~Kl~~l----v~~L~~ll~e~g~~vL 276 (844)
T TIGR02621 205 PLRVVELTATSRTDGPDRTTLLSAEDYK-HPVLKKRLAAKKIVKLV--PPSD-EKFLSTM----VKELNLLMKDSGGAIL 276 (844)
T ss_pred cceEEEEecCCCccHHHHHHHHccCCce-eecccccccccceEEEE--ecCh-HHHHHHH----HHHHHHHHhhCCCcEE
Confidence 3699999999974 34444444333211 11111111111111111 1111 1111111 111111 114568999
Q ss_pred EEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHH-----HHHH
Q 000849 689 VFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQE-----VVST 763 (1254)
Q Consensus 689 VF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~-----~v~~ 763 (1254)
|||||++.|+.++..|.. .++..+||+|++.+|. .+++
T Consensus 277 VF~NTv~~Aq~L~~~L~~-------------------------------------~g~~lLHG~m~q~dR~~~~~~~il~ 319 (844)
T TIGR02621 277 VFCRTVKHVRKVFAKLPK-------------------------------------EKFELLTGTLRGAERDDLVKKEIFN 319 (844)
T ss_pred EEECCHHHHHHHHHHHHh-------------------------------------cCCeEeeCCCCHHHHhhHHHHHHHH
Confidence 999999999999987742 1347899999999999 8899
Q ss_pred HHhc----CC-------ceEEEeCcccccccCCc-ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEE
Q 000849 764 LFEA----GK-------IKVCVMSSSMCWEVPLT-AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVIL 822 (1254)
Q Consensus 764 ~F~~----g~-------~~VLVaT~~l~~Gvdip-~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil 822 (1254)
.|++ |. .+|||||+++++|+|++ ..+|+.. .+..+|+||+||+||.|....+.++++
T Consensus 320 ~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~--aP~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 320 RFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDL--APFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHhccccccccccccccceEEeccchhhhcccCCcceEEECC--CCHHHHHHHhcccCCCCCCCCceEEEE
Confidence 9987 54 78999999999999999 5555533 467999999999999996444444444
No 80
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-31 Score=287.06 Aligned_cols=335 Identities=18% Similarity=0.218 Sum_probs=244.9
Q ss_pred chHHHHhcc-CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHH
Q 000849 410 PSYEALYQN-YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 410 ~~~~~~~~~-~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~i 488 (1254)
..++.+... |+.|+|+|++.+|.++++.+ ++-. |-||||||.||.+||
T Consensus 31 ~v~raI~kkg~~~ptpiqRKTipliLe~~d-vv~m------------------------------artgsgktaaf~ipm 79 (529)
T KOG0337|consen 31 KVLRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGM------------------------------ARTGSGKTAAFLIPM 79 (529)
T ss_pred HHHHHHHHhhcCCCCchhcccccceeeccc-ccee------------------------------eecCCcchhhHHHHH
Confidence 445555544 99999999999999999876 4444 999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--hc-ccCcEEEEcHhhHHHHHHh
Q 000849 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK--LL-EKGQIIISTPEKWDALSRR 565 (1254)
Q Consensus 489 l~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~-~~~~Iiv~Tpe~l~~l~~~ 565 (1254)
++.+.... ..+.+++++.|+|+|+.|..+.++. ++...+++...++|+.+...+ .+ .++|||++||+++..+.-.
T Consensus 80 ~e~Lk~~s-~~g~RalilsptreLa~qtlkvvkd-lgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve 157 (529)
T KOG0337|consen 80 IEKLKSHS-QTGLRALILSPTRELALQTLKVVKD-LGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE 157 (529)
T ss_pred HHHHhhcc-ccccceeeccCcHHHHHHHHHHHHH-hccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh
Confidence 99999854 5567999999999999999988875 777778888877776554322 23 4789999999998554443
Q ss_pred hhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCC
Q 000849 566 WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGV 645 (1254)
Q Consensus 566 ~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~ 645 (1254)
. ...++.+.+||+||++.+.+ +| +-.++..+.+..+...|.+++|||+|+. +..|-.... .
T Consensus 158 m--~l~l~sveyVVfdEadrlfe-mg-----fqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaGl---------~ 218 (529)
T KOG0337|consen 158 M--TLTLSSVEYVVFDEADRLFE-MG-----FQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAGL---------V 218 (529)
T ss_pred e--eccccceeeeeehhhhHHHh-hh-----hHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHccC---------C
Confidence 2 23588999999999999884 22 3455666666667888999999999854 333332221 1
Q ss_pred cccccEEEEeeccCCChHHHHHhh----CHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCccccccccc
Q 000849 646 RPVPLEIQIQGVDITNFEARMKAM----TKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLC 721 (1254)
Q Consensus 646 r~v~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~ 721 (1254)
.|+-+...+...-.......+... .......++...-..++++|||.|+..++.+...+..
T Consensus 219 ~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~--------------- 283 (529)
T KOG0337|consen 219 PPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRD--------------- 283 (529)
T ss_pred CCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHh---------------
Confidence 122211111100000000000000 0011122222223456899999999999887655432
Q ss_pred ChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHH
Q 000849 722 SAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILT 799 (1254)
Q Consensus 722 ~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~ 799 (1254)
.++++..++|.|++..|..-...|+.++..+||.|+++++|+|+| +.+++++.|.+..
T Consensus 284 --------------------~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k 343 (529)
T KOG0337|consen 284 --------------------FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK 343 (529)
T ss_pred --------------------cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc
Confidence 256788899999999999999999999999999999999999999 7888999999999
Q ss_pred HHHHhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849 800 TLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK 833 (1254)
Q Consensus 800 ~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~ 833 (1254)
-|+||+||+.|+|. .|.+|-++.+++..+...
T Consensus 344 lFvhRVgr~aragr--tg~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 344 LFVHRVGRVARAGR--TGRAYSLVASTDDPYLLD 375 (529)
T ss_pred eEEEEecchhhccc--cceEEEEEecccchhhhh
Confidence 99999999999997 899999988887666543
No 81
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.97 E-value=3.9e-30 Score=311.73 Aligned_cols=446 Identities=15% Similarity=0.161 Sum_probs=304.9
Q ss_pred hhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcc
Q 000849 447 RKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK 526 (1254)
Q Consensus 447 ~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~ 526 (1254)
+++|+ +..++++++.|.+++++++.|.||||||+.....++......+ +..+++|.+|+|--|..++++++...+.
T Consensus 170 ~~LPa--~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 170 ESLPA--YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HhCcc--HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 44553 4688999999999999999999999999999999998876633 4569999999999999999999988877
Q ss_pred ccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHh
Q 000849 527 ELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIAS 606 (1254)
Q Consensus 527 ~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~ 606 (1254)
..|-.|++-.+-.+. .-..+.+.+||.|.| +|.......+..+.++|+||+| +|+..-+.++-.++.+..
T Consensus 246 ~~g~~VGYqvrl~~~---~s~~t~L~fcTtGvL---Lr~L~~~~~l~~vthiivDEVH----ER~i~~DflLi~lk~lL~ 315 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESK---RSRETRLLFCTTGVL---LRRLQSDPTLSGVTHIIVDEVH----ERSINTDFLLILLKDLLP 315 (924)
T ss_pred ccCCeeeEEEeeecc---cCCceeEEEecHHHH---HHHhccCcccccCceeeeeeEE----EccCCcccHHHHHHHHhh
Confidence 767666665443322 223479999999998 5555557789999999999999 666666666766766665
Q ss_pred hcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEE--------EE--e-----eccCCC------hHHH
Q 000849 607 QVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEI--------QI--Q-----GVDITN------FEAR 665 (1254)
Q Consensus 607 ~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~--------~~--~-----~~~~~~------~~~~ 665 (1254)
+ .++.++|+||||+ |++.+..|+|..+ ++..+....|+.... .+ . ...... ....
T Consensus 316 ~-~p~LkvILMSAT~-dae~fs~YF~~~p--vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 316 R-NPDLKVILMSATL-DAELFSDYFGGCP--VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred h-CCCceEEEeeeec-chHHHHHHhCCCc--eEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 5 5899999999999 7999999999664 222222222221000 00 0 000000 0000
Q ss_pred HHhhCHHHHHHHHhhh---hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHh
Q 000849 666 MKAMTKPTYTAIMQHA---KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATL 742 (1254)
Q Consensus 666 ~~~~~~~~~~~i~~~~---~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 742 (1254)
...+...+...+.+++ ...+.+|||.++..++..+...|.......+. .
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------------------~ 443 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------------------L 443 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------c
Confidence 0001222222333332 45678999999999999998877543222111 1
Q ss_pred hccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeec--------ccc----------cCCHHHHH
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLAT--------GRK----------MLILTTLL 802 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~--------~~~----------~~s~~~~~ 802 (1254)
.+-+..+|+.|+..+++.|+.....|..+|++||++++.+|.|| +++|+ ++. ..|.++..
T Consensus 444 ~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~ 523 (924)
T KOG0920|consen 444 KFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAK 523 (924)
T ss_pred ceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchH
Confidence 34588899999999999999999999999999999999999999 56661 221 16789999
Q ss_pred HhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCC
Q 000849 803 QMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNP 882 (1254)
Q Consensus 803 Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP 882 (1254)
||.|||||.. .|.||.+++.. .|+++.. ..++++.+...+-.....-.+-...+..++|+ ++...|
T Consensus 524 QR~GRAGRv~---~G~cy~L~~~~---~~~~~~~-----~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLs---kaldpP 589 (924)
T KOG0920|consen 524 QRRGRAGRVR---PGICYHLYTRS---RYEKLML-----AYQLPEILRTPLEELCLHIKVLEQGSIKAFLS---KALDPP 589 (924)
T ss_pred HhcccccCcc---CCeeEEeechh---hhhhccc-----ccCChHHHhChHHHhhheeeeccCCCHHHHHH---HhcCCC
Confidence 9999999998 89999999853 4444433 12233333322222222212222222223332 344444
Q ss_pred CcccCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHH
Q 000849 883 NYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEV 962 (1254)
Q Consensus 883 ~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~i 962 (1254)
+. +.+..|+..|.+.|++..++ .+|++|+.+|.+++++.-.+++....-..| .+.++.+
T Consensus 590 ~~----------------~~v~~a~~~L~~igaL~~~e----~LT~LG~~la~lPvd~~igK~ll~g~if~c-Ldp~l~i 648 (924)
T KOG0920|consen 590 PA----------------DAVDLAIERLKQIGALDESE----ELTPLGLHLASLPVDVRIGKLLLFGAIFGC-LDPALTI 648 (924)
T ss_pred Ch----------------HHHHHHHHHHHHhccccCcc----cchHHHHHHHhCCCccccchhheehhhccc-cchhhhH
Confidence 32 46899999999999997654 789999999999999999999886554444 3334444
Q ss_pred HhCccccccCCC
Q 000849 963 LASASEYAQLPI 974 (1254)
Q Consensus 963 ls~s~Ef~~l~~ 974 (1254)
.|... |.+..+
T Consensus 649 aa~Ls-~k~PF~ 659 (924)
T KOG0920|consen 649 AAALS-FKSPFV 659 (924)
T ss_pred HHHhc-cCCCcc
Confidence 43333 544433
No 82
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=5.8e-30 Score=296.41 Aligned_cols=300 Identities=19% Similarity=0.217 Sum_probs=198.6
Q ss_pred HHHHHHHHHhcCCc-hHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEE
Q 000849 425 IQTQVFAVLYNTED-NVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRA 503 (1254)
Q Consensus 425 ~Q~~~~~~~~~~~~-n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~v 503 (1254)
+|.++++.+++++. +++++ ||||||||.+|++|++. ... ++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~------------------------------apTGsGKT~~~~~~~l~------~~~--~~ 42 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNT------------------------------APTGAGKTLAWLTPLLH------GEN--DT 42 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEE------------------------------CCCCCCHHHHHHHHHHH------cCC--CE
Confidence 48888888887764 45666 99999999999999883 233 78
Q ss_pred EEEcchHHHHHHHHHHHHHhhccc---cCcEEEEeccccccchh-----------------------hcccCcEEEEcHh
Q 000849 504 VYIAPIEALAKQRYCDWERKFGKE---LGMCVVELTVETAMDLK-----------------------LLEKGQIIISTPE 557 (1254)
Q Consensus 504 l~i~P~r~La~q~~~~~~~~~~~~---~~~~v~~~~g~~~~~~~-----------------------~~~~~~Iiv~Tpe 557 (1254)
+|++|+++|++|++++|.+.+... .+..+..++|++..+.+ ....++|++|||+
T Consensus 43 ~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~ 122 (357)
T TIGR03158 43 IALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPD 122 (357)
T ss_pred EEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHH
Confidence 999999999999999999877432 36778888887433211 0125689999999
Q ss_pred hHHHHHHhhhccc------ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHH
Q 000849 558 KWDALSRRWKQRK------YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGE 629 (1254)
Q Consensus 558 ~l~~l~~~~~~~~------~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~ 629 (1254)
.|+.+++.+.... ++.+++++|+||+|.+.......+...+..+..+... ....+++++|||++.. +.+.+
T Consensus 123 ~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~l~~ 201 (357)
T TIGR03158 123 IFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDPALILRLQN 201 (357)
T ss_pred HHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCHHHHHHHHh
Confidence 9988887653221 3689999999999999864444444333433332221 2357999999999743 22222
Q ss_pred h--hcCCCCee----EecCC-----------CCccc--ccEEEEeeccCCChHHHHHhhCHHHHHHHHhhh--hcCCCeE
Q 000849 630 W--IGASSHGV----FNFPP-----------GVRPV--PLEIQIQGVDITNFEARMKAMTKPTYTAIMQHA--KNEKPAL 688 (1254)
Q Consensus 630 ~--l~~~~~~~----~~~~~-----------~~r~v--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~l 688 (1254)
. ++.+...+ +.+.. ++||+ +++..+.. ........+ ....+.+.+.+ .+++++|
T Consensus 202 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l----~~l~~~i~~~~~~~~~~k~L 276 (357)
T TIGR03158 202 AKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEEL----SELAEEVIERFRQLPGERGA 276 (357)
T ss_pred ccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHH----HHHHHHHHHHHhccCCCeEE
Confidence 2 22111000 11110 22333 23333322 111111111 12223332222 3567999
Q ss_pred EEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcC
Q 000849 689 VFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAG 768 (1254)
Q Consensus 689 VF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g 768 (1254)
|||+|++.++.++..|.... .+..+..+||.+++.+|.++ +
T Consensus 277 If~nt~~~~~~l~~~L~~~~---------------------------------~~~~~~~l~g~~~~~~R~~~------~ 317 (357)
T TIGR03158 277 IILDSLDEVNRLSDLLQQQG---------------------------------LGDDIGRITGFAPKKDRERA------M 317 (357)
T ss_pred EEECCHHHHHHHHHHHhhhC---------------------------------CCceEEeeecCCCHHHHHHh------c
Confidence 99999999999998775320 02346789999999998754 4
Q ss_pred CceEEEeCcccccccCCc-ceeecccccCCHHHHHHhhcccC
Q 000849 769 KIKVCVMSSSMCWEVPLT-AHLATGRKMLILTTLLQMMGHAG 809 (1254)
Q Consensus 769 ~~~VLVaT~~l~~Gvdip-~~~V~~~~~~s~~~~~Qr~GRaG 809 (1254)
+.+|||||+++++|+|+| ..+| . .|.+..+|+||+||+|
T Consensus 318 ~~~iLVaTdv~~rGiDi~~~~vi-~-~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 318 QFDILLGTSTVDVGVDFKRDWLI-F-SARDAAAFWQRLGRLG 357 (357)
T ss_pred cCCEEEEecHHhcccCCCCceEE-E-CCCCHHHHhhhcccCC
Confidence 789999999999999999 5444 3 3789999999999997
No 83
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-30 Score=278.90 Aligned_cols=335 Identities=15% Similarity=0.203 Sum_probs=247.1
Q ss_pred chHHHHhcc-CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHH
Q 000849 410 PSYEALYQN-YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 410 ~~~~~~~~~-~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~i 488 (1254)
.-++.+|.- |..|+.+|+.|+..+..|.+ +.+. +++|+|||.+|..++
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~q------------------------------aqsgTgKt~af~i~i 84 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQ------------------------------AQSGTGKTAAFLISI 84 (397)
T ss_pred HHHhHHHhhccCCchHHHhccccccccCCc-eeEe------------------------------eeccccchhhhHHHH
Confidence 445666654 99999999999999988754 5555 999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccc--hhhc--ccCcEEEEcHhhHHHHHH
Q 000849 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD--LKLL--EKGQIIISTPEKWDALSR 564 (1254)
Q Consensus 489 l~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~--~~~~Iiv~Tpe~l~~l~~ 564 (1254)
++.+.. +.+...+++++|+|+||.|+.+.... ++...+.++..+.|+.... ...+ ..++|+++||++...+++
T Consensus 85 Lq~iD~--~~ke~qalilaPtreLa~qi~~v~~~-lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~ 161 (397)
T KOG0327|consen 85 LQQIDM--SVKETQALILAPTRELAQQIQKVVRA-LGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLN 161 (397)
T ss_pred HhhcCc--chHHHHHHHhcchHHHHHHHHHHHHh-hhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhc
Confidence 988755 23344899999999999999966654 6666789999888876543 2222 346999999999977776
Q ss_pred hhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-hHHHHHhhcCCCCeeEecCC
Q 000849 565 RWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGASSHGVFNFPP 643 (1254)
Q Consensus 565 ~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~-~~~l~~~l~~~~~~~~~~~~ 643 (1254)
.. ......++++|+||++.+.. +| +...+..+....+.+.|++++|||.|. ..++.+-+...+..+..-..
T Consensus 162 ~~--~l~~~~iKmfvlDEaDEmLs-~g-----fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~ 233 (397)
T KOG0327|consen 162 RG--SLSTDGIKMFVLDEADEMLS-RG-----FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD 233 (397)
T ss_pred cc--cccccceeEEeecchHhhhc-cc-----hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch
Confidence 53 44567799999999998884 33 345566666667899999999999984 35555544443322211111
Q ss_pred CCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccCh
Q 000849 644 GVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSA 723 (1254)
Q Consensus 644 ~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~ 723 (1254)
...---+...+....... .+..+........+++||||+++.+..+...|..
T Consensus 234 ~ltl~gikq~~i~v~k~~-----------k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~~----------------- 285 (397)
T KOG0327|consen 234 ELTLEGIKQFYINVEKEE-----------KLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLRA----------------- 285 (397)
T ss_pred hhhhhheeeeeeeccccc-----------cccHHHHHHHhhhcceEEecchhhHHHHHHHHhh-----------------
Confidence 100000001111111111 1112222223567899999999999998876632
Q ss_pred hchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHH
Q 000849 724 KEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTL 801 (1254)
Q Consensus 724 ~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~ 801 (1254)
.+..+...|+.|.+.+|..+.+.|+.|..+|||.|+.+++|+|+. .-+|+++.|....+|
T Consensus 286 ------------------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~y 347 (397)
T KOG0327|consen 286 ------------------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENY 347 (397)
T ss_pred ------------------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhh
Confidence 255688999999999999999999999999999999999999999 455599999999999
Q ss_pred HHhhcccCCCCCCCCceEEEEccCCcHHHHHHh
Q 000849 802 LQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 802 ~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
+||+||+||.|. +|.++-++.+.+...+++.
T Consensus 348 ihR~gr~gr~gr--kg~~in~v~~~d~~~lk~i 378 (397)
T KOG0327|consen 348 IHRIGRAGRFGR--KGVAINFVTEEDVRDLKDI 378 (397)
T ss_pred hhhcccccccCC--CceeeeeehHhhHHHHHhH
Confidence 999999999997 9999999998876665543
No 84
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.9e-29 Score=277.05 Aligned_cols=333 Identities=21% Similarity=0.223 Sum_probs=221.8
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
.-+++.+|......++.+ |.|++ .|||-|||+++.+.+...+.. .+
T Consensus 13 ~ie~R~YQ~~i~a~al~~--NtLvv------------------------------lPTGLGKT~IA~~V~~~~l~~--~~ 58 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK--NTLVV------------------------------LPTGLGKTFIAAMVIANRLRW--FG 58 (542)
T ss_pred cccHHHHHHHHHHHHhhc--CeEEE------------------------------ecCCccHHHHHHHHHHHHHHh--cC
Confidence 345666777777666553 55655 999999999999999988877 24
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--hcccCcEEEEcHhhH-HHHHHhhhccccccee
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK--LLEKGQIIISTPEKW-DALSRRWKQRKYVQQV 575 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~v 575 (1254)
+ ++|+++||+.|+.|++..+.+.++-. .-.++.++|...++.+ .+.+++|+|+||+.+ +++... +..+.++
T Consensus 59 ~--kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G---rid~~dv 132 (542)
T COG1111 59 G--KVLFLAPTKPLVLQHAEFCRKVTGIP-EDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG---RIDLDDV 132 (542)
T ss_pred C--eEEEecCCchHHHHHHHHHHHHhCCC-hhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC---ccChHHc
Confidence 4 89999999999999999999866532 4578899999987744 567889999999998 444432 4568899
Q ss_pred eEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh----HHHHHhhcCCCCeeE-ecCCCCccccc
Q 000849 576 SLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA----KDLGEWIGASSHGVF-NFPPGVRPVPL 650 (1254)
Q Consensus 576 ~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~----~~l~~~l~~~~~~~~-~~~~~~r~v~l 650 (1254)
.++|+||||+-.++ ..|-.+...... ..++++++|||||++.. .++.+-||.....+- .-++..+|.--
T Consensus 133 ~~lifDEAHRAvGn--yAYv~Va~~y~~----~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~ 206 (542)
T COG1111 133 SLLIFDEAHRAVGN--YAYVFVAKEYLR----SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVK 206 (542)
T ss_pred eEEEechhhhccCc--chHHHHHHHHHH----hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhc
Confidence 99999999987632 233323332221 25688999999998753 445555655431110 01111111100
Q ss_pred E--EEEeeccC-------------------------------C--ChHHHHHhh----------CH--------------
Q 000849 651 E--IQIQGVDI-------------------------------T--NFEARMKAM----------TK-------------- 671 (1254)
Q Consensus 651 ~--~~~~~~~~-------------------------------~--~~~~~~~~~----------~~-------------- 671 (1254)
. +....++. . ...+.+..+ ..
T Consensus 207 ~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~k 286 (542)
T COG1111 207 KIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIK 286 (542)
T ss_pred cceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence 0 00000000 0 000000000 00
Q ss_pred --------------H---------------------------------------------------HHHHHHhhh--hcC
Q 000849 672 --------------P---------------------------------------------------TYTAIMQHA--KNE 684 (1254)
Q Consensus 672 --------------~---------------------------------------------------~~~~i~~~~--~~~ 684 (1254)
+ +.+.+.+.+ ..+
T Consensus 287 l~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~ 366 (542)
T COG1111 287 LAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGD 366 (542)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCC
Confidence 0 000011122 345
Q ss_pred CCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHH
Q 000849 685 KPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTL 764 (1254)
Q Consensus 685 ~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~ 764 (1254)
.++|||++-|..++.++..|........ .+ |+ |-+-.-+..||++.++..+++.
T Consensus 367 ~RvIVFT~yRdTae~i~~~L~~~~~~~~--~r-Fi-----------------------GQa~r~~~~GMsQkeQ~eiI~~ 420 (542)
T COG1111 367 SRVIVFTEYRDTAEEIVNFLKKIGIKAR--VR-FI-----------------------GQASREGDKGMSQKEQKEIIDQ 420 (542)
T ss_pred ceEEEEehhHhHHHHHHHHHHhcCCcce--eE-Ee-----------------------eccccccccccCHHHHHHHHHH
Confidence 6899999999999988887754322211 01 22 2223335589999999999999
Q ss_pred HhcCCceEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCceEEEEccCC
Q 000849 765 FEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826 (1254)
Q Consensus 765 F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~ 826 (1254)
|++|+.+|||||++.+.|+|+| +++| .|...-|.-.++||.||+||.. .|.++++..++
T Consensus 421 Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r---~Grv~vLvt~g 481 (542)
T COG1111 421 FRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKR---KGRVVVLVTEG 481 (542)
T ss_pred HhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCC---CCeEEEEEecC
Confidence 9999999999999999999999 6655 6666678899999999999975 89999988877
No 85
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.3e-28 Score=261.85 Aligned_cols=431 Identities=17% Similarity=0.160 Sum_probs=290.2
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v 532 (1254)
.+..+.+.++-+.+++.++++|.||||||+......+...... .+ .|.+.+|+|.-|.+++.++...+.-.+|-.|
T Consensus 48 vw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--~~--~v~CTQprrvaamsva~RVadEMDv~lG~EV 123 (699)
T KOG0925|consen 48 VWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--LT--GVACTQPRRVAAMSVAQRVADEMDVTLGEEV 123 (699)
T ss_pred hHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--cc--ceeecCchHHHHHHHHHHHHHHhccccchhc
Confidence 3456777888889999999999999999998877766655542 24 6999999999999999999987765555555
Q ss_pred EEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCc
Q 000849 533 VELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKI 612 (1254)
Q Consensus 533 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~ 612 (1254)
+...- .....-.++-+-+||.++| +|....+..+..+++||+|||| +|....+.+...++..... .++.
T Consensus 124 GysIr---fEdC~~~~T~Lky~tDgmL---lrEams~p~l~~y~viiLDeah----ERtlATDiLmGllk~v~~~-rpdL 192 (699)
T KOG0925|consen 124 GYSIR---FEDCTSPNTLLKYCTDGML---LREAMSDPLLGRYGVIILDEAH----ERTLATDILMGLLKEVVRN-RPDL 192 (699)
T ss_pred ccccc---ccccCChhHHHHHhcchHH---HHHHhhCcccccccEEEechhh----hhhHHHHHHHHHHHHHHhh-CCCc
Confidence 44221 1111111233457788877 6777778889999999999999 8888889899999888776 4699
Q ss_pred EEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEec
Q 000849 613 RIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVP 692 (1254)
Q Consensus 613 rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~ 692 (1254)
++|.||||+ ++..+..|++..+ +...+. ..|+ ++.+...... +.+.+..+.+++.- .. ...+.++||..
T Consensus 193 k~vvmSatl-~a~Kfq~yf~n~P--ll~vpg-~~Pv--Ei~Yt~e~er---DylEaairtV~qih-~~-ee~GDilvFLt 261 (699)
T KOG0925|consen 193 KLVVMSATL-DAEKFQRYFGNAP--LLAVPG-THPV--EIFYTPEPER---DYLEAAIRTVLQIH-MC-EEPGDILVFLT 261 (699)
T ss_pred eEEEeeccc-chHHHHHHhCCCC--eeecCC-CCce--EEEecCCCCh---hHHHHHHHHHHHHH-hc-cCCCCEEEEec
Confidence 999999998 7889999999876 455554 4444 3333222222 23333333333322 22 56889999999
Q ss_pred ChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhc---C-
Q 000849 693 SRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEA---G- 768 (1254)
Q Consensus 693 s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~---g- 768 (1254)
+.++.+..++.+......-+.. .....|..+| +.++..+++.... |
T Consensus 262 geeeIe~aC~~i~re~~~L~~~--------------------------~g~l~v~PLy----P~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 262 GEEEIEDACRKISREVDNLGPQ--------------------------VGPLKVVPLY----PAQQQRIFEPAPEKRNGA 311 (699)
T ss_pred CHHHHHHHHHHHHHHHHhhccc--------------------------cCCceEEecC----chhhccccCCCCcccCCC
Confidence 9999999988876443322211 1134566777 5555555554432 2
Q ss_pred -CceEEEeCcccccccCCc--ceeec------------------ccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 769 -KIKVCVMSSSMCWEVPLT--AHLAT------------------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 769 -~~~VLVaT~~l~~Gvdip--~~~V~------------------~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
..+|+|+|++++.++.++ .++|+ --.|+|..+..||.|||||.. +|+|+.++++
T Consensus 312 ~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~---pGkcfrLYte-- 386 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRLYTE-- 386 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC---CCceEEeecH--
Confidence 468999999999999999 56661 113488999999999999987 8999999984
Q ss_pred HHHHHHhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHH
Q 000849 828 KEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTI 907 (1254)
Q Consensus 828 ~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l 907 (1254)
+++++-+... ..++.+...+.+.+..-.-....|... |.+...|. -+.+..|+
T Consensus 387 -~~~~~em~~~-----typeilrsNL~s~VL~LKklgI~dlvh-----fdfmDpPA----------------PEtLMrAL 439 (699)
T KOG0925|consen 387 -EAFEKEMQPQ-----TYPEILRSNLSSTVLQLKKLGIDDLVH-----FDFMDPPA----------------PETLMRAL 439 (699)
T ss_pred -HhhhhcCCCC-----CcHHHHHHhhHHHHHHHHhcCcccccC-----CcCCCCCC----------------hHHHHHHH
Confidence 3444332211 123333333333333222222223222 11222221 24577788
Q ss_pred HHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChh
Q 000849 908 SDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPG 977 (1254)
Q Consensus 908 ~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~ 977 (1254)
+.|.-.+++. +|| .+|++|.+||.|+++|..+++++.+...+| ..++|.+-|+-+- ....+|+.
T Consensus 440 E~LnYLaaLd--DdG--nLT~lG~imSEFPLdPqLAkmLi~S~efnC-snEiLsisAMLsv-PncFvRp~ 503 (699)
T KOG0925|consen 440 EVLNYLAALD--DDG--NLTSLGEIMSEFPLDPQLAKMLIGSCEFNC-SNEILSISAMLSV-PNCFVRPT 503 (699)
T ss_pred HHhhhhhhhC--CCc--ccchhhhhhhcCCCChHHHHHHhhcCCCCc-hHHHHHHHhcccC-CccccCCC
Confidence 8888888884 333 567899999999999999999999887776 4566666655442 34445544
No 86
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.8e-28 Score=280.84 Aligned_cols=435 Identities=18% Similarity=0.162 Sum_probs=282.1
Q ss_pred HHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh---cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEE
Q 000849 457 KQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA---SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533 (1254)
Q Consensus 457 Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~---~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~ 533 (1254)
-++|+++|..|.+||++|.||||||+.....++..-... ...| .+-+..|+|-.|..+++++...++. +|-.|+
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~g--mIGITqPRRVAaiamAkRVa~EL~~-~~~eVs 337 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPG--MIGITQPRRVAAIAMAKRVAFELGV-LGSEVS 337 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCC--eeeecCchHHHHHHHHHHHHHHhcc-Ccccee
Confidence 478999999999999999999999998877766543331 1234 7889999999999999999988887 366666
Q ss_pred EeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHH---HHhhcCC
Q 000849 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRY---IASQVEN 610 (1254)
Q Consensus 534 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~---~~~~~~~ 610 (1254)
+... .+...-..+.|.++|.|.| +|....+..+..++.||+|||| +|....+.++..+.+ +......
T Consensus 338 YqIR---fd~ti~e~T~IkFMTDGVL---LrEi~~DflL~kYSvIIlDEAH----ERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 338 YQIR---FDGTIGEDTSIKFMTDGVL---LREIENDFLLTKYSVIILDEAH----ERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEEE---eccccCCCceeEEecchHH---HHHHHHhHhhhhceeEEechhh----hccchHHHHHHHHHHHHHHHHHHhh
Confidence 5432 2222234679999999998 6776678889999999999999 676666666554433 3333333
Q ss_pred ------CcEEEEecCCCCChHHHHH---hhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHH---HH
Q 000849 611 ------KIRIVALSTSLANAKDLGE---WIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTA---IM 678 (1254)
Q Consensus 611 ------~~rii~lSATl~~~~~l~~---~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~---i~ 678 (1254)
+.++|.||||+ ...|+.+ .+...+. ++.. ..|..|+.+|+..-...++... .|.. |.
T Consensus 408 e~~~~kpLKLIIMSATL-RVsDFtenk~LFpi~pP-likV--dARQfPVsIHF~krT~~DYi~e-------AfrKtc~IH 476 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATL-RVSDFTENKRLFPIPPP-LIKV--DARQFPVSIHFNKRTPDDYIAE-------AFRKTCKIH 476 (1172)
T ss_pred hhcccCceeEEEEeeeE-EecccccCceecCCCCc-eeee--ecccCceEEEeccCCCchHHHH-------HHHHHHHHh
Confidence 88999999999 4444431 1222221 2222 3466677777655444443322 2222 33
Q ss_pred hhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCccc------cccc----------------ccChhchhhHHhhc---
Q 000849 679 QHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQK------SAFL----------------LCSAKEVEPHVSII--- 733 (1254)
Q Consensus 679 ~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~------~~~~----------------~~~~~~l~~~~~~~--- 733 (1254)
+. -+.+.+|||+....++..+++.|.+......... ..+- ....+.+....+.+
T Consensus 477 ~k-LP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~ 555 (1172)
T KOG0926|consen 477 KK-LPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQE 555 (1172)
T ss_pred hc-CCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhh
Confidence 33 4677899999999999999999988754211000 0000 00000000000000
Q ss_pred -------------------------------ChHHHHHHh--------hccceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 000849 734 -------------------------------QEEMLRATL--------RLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCV 774 (1254)
Q Consensus 734 -------------------------------~~~~L~~~l--------~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLV 774 (1254)
.+..+.... ..-|..+++-|+.+++.+|++.-..|..-++|
T Consensus 556 ~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVV 635 (1172)
T KOG0926|consen 556 LVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVV 635 (1172)
T ss_pred hhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEE
Confidence 001111111 12367889999999999999999999999999
Q ss_pred eCcccccccCCc--ceeecc--------cc----------cCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHH-H
Q 000849 775 MSSSMCWEVPLT--AHLATG--------RK----------MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYK-K 833 (1254)
Q Consensus 775 aT~~l~~Gvdip--~~~V~~--------~~----------~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~-~ 833 (1254)
||++++.++.|| -++|++ +. ..|.++.-||+|||||.| +|+||.+|+.. .|. .
T Consensus 636 aTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSA---Vf~~~ 709 (1172)
T KOG0926|consen 636 ATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSA---VFSND 709 (1172)
T ss_pred eccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhH---Hhhcc
Confidence 999999999999 566622 11 167888999999999999 89999999853 222 1
Q ss_pred hhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHC
Q 000849 834 FLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAT 913 (1254)
Q Consensus 834 ~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~ 913 (1254)
|- +..+++.+.......+......+....++| | + .+++. ...++.|.+.|..+
T Consensus 710 Fe------~fS~PEIlk~Pve~lvLqMKsMnI~kVvnF----------P----F--PtpPd-----~~~L~~Aer~L~~L 762 (1172)
T KOG0926|consen 710 FE------EFSLPEILKKPVESLVLQMKSMNIDKVVNF----------P----F--PTPPD-----RSALEKAERRLKAL 762 (1172)
T ss_pred hh------hhccHHHhhCcHHHHHHHHHhcCccceecC----------C----C--CCCcc-----HHHHHHHHHHHHHh
Confidence 21 112222222222222222222222222221 1 1 11111 23588999999999
Q ss_pred CCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCc
Q 000849 914 RSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSK 953 (1254)
Q Consensus 914 g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~ 953 (1254)
|+++.+ | ..|.+|..||.|+++|.-.+++.-+...+
T Consensus 763 gALd~~--g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 763 GALDSN--G--GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred cccccc--C--CcccccchhcccccChhHHHHHHHHHhhc
Confidence 999653 2 67999999999999999999998654433
No 87
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=1.4e-28 Score=264.06 Aligned_cols=328 Identities=20% Similarity=0.245 Sum_probs=231.3
Q ss_pred hHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHH
Q 000849 411 SYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILR 490 (1254)
Q Consensus 411 ~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~ 490 (1254)
.++.+|..-+.-++.|++|+..+..++.++.|+ +|||+||++||.||.|-
T Consensus 10 aLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVs------------------------------MPTGaGKSLCyQLPaL~ 59 (641)
T KOG0352|consen 10 ALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVS------------------------------MPTGAGKSLCYQLPALV 59 (641)
T ss_pred HHHHHhCchhhcChHHHHHHHHHHhccCcEEEe------------------------------ccCCCchhhhhhchHHH
Confidence 456677633344789999999998888878888 99999999999999872
Q ss_pred HHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh---------hcccCcEEEEcHhhH--
Q 000849 491 NHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---------LLEKGQIIISTPEKW-- 559 (1254)
Q Consensus 491 ~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---------~~~~~~Iiv~Tpe~l-- 559 (1254)
.++ ..|++.|..+|..++.+.+.+ +.+.+..+.+..+...+ ...+..+++.|||..
T Consensus 60 ------~~g--ITIV~SPLiALIkDQiDHL~~-----LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt 126 (641)
T KOG0352|consen 60 ------HGG--ITIVISPLIALIKDQIDHLKR-----LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAAT 126 (641)
T ss_pred ------hCC--eEEEehHHHHHHHHHHHHHHh-----cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhh
Confidence 355 889999999999999999886 23444444443332211 123448999999984
Q ss_pred ---HHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCC
Q 000849 560 ---DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGAS 634 (1254)
Q Consensus 560 ---~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~ 634 (1254)
..+++... .-..+.++||||||+.+ .+|+.+..-.-++..+.+. -++...++++||-... +|+..-|...
T Consensus 127 ~~FQ~lLn~L~---~r~~L~Y~vVDEAHCVS-QWGHDFRPDYL~LG~LRS~-~~~vpwvALTATA~~~VqEDi~~qL~L~ 201 (641)
T KOG0352|consen 127 DGFQKLLNGLA---NRDVLRYIVVDEAHCVS-QWGHDFRPDYLTLGSLRSV-CPGVPWVALTATANAKVQEDIAFQLKLR 201 (641)
T ss_pred hhHHHHHHHHh---hhceeeeEEechhhhHh-hhccccCcchhhhhhHHhh-CCCCceEEeecccChhHHHHHHHHHhhc
Confidence 23333322 23568999999999998 5555554444444444443 3578899999997532 7777766654
Q ss_pred CC-eeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhh----h-----------hcCCCeEEEecChhhHH
Q 000849 635 SH-GVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQH----A-----------KNEKPALVFVPSRKYAR 698 (1254)
Q Consensus 635 ~~-~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~-----------~~~~~~lVF~~s~~~~~ 698 (1254)
.. .+|. .|.+|.. .-+...+.......|..+... + ...+-.||||.||++|+
T Consensus 202 ~PVAiFk-TP~FR~N-----------LFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cE 269 (641)
T KOG0352|consen 202 NPVAIFK-TPTFRDN-----------LFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECE 269 (641)
T ss_pred CcHHhcc-Ccchhhh-----------hhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHH
Confidence 31 2222 2222221 011112222222222222111 1 12345899999999999
Q ss_pred HHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcc
Q 000849 699 LTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSS 778 (1254)
Q Consensus 699 ~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~ 778 (1254)
.+|-.|.. -|.+...+|+||...+|..|.+.+.+|++.||+||..
T Consensus 270 q~AI~l~~-----------------------------------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~S 314 (641)
T KOG0352|consen 270 QVAIMLEI-----------------------------------AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVS 314 (641)
T ss_pred HHHHHhhh-----------------------------------cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEec
Confidence 99966532 2667888999999999999999999999999999999
Q ss_pred cccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhh
Q 000849 779 MCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFL 835 (1254)
Q Consensus 779 l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l 835 (1254)
+++|||-| ++.| +.+.+.+++-|.|..|||||.|. .+.|-+++..++++.+.-++
T Consensus 315 FGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk--~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 315 FGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGK--RSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred cccccCCcceeEEEecCchhhhHHHHHhccccccCCC--ccceeeeecccchHHHHHHH
Confidence 99999999 5555 88888999999999999999997 89999999998877665443
No 88
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.1e-27 Score=290.09 Aligned_cols=310 Identities=17% Similarity=0.132 Sum_probs=192.4
Q ss_pred CCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcE
Q 000849 452 ARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMC 531 (1254)
Q Consensus 452 ~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~ 531 (1254)
+++++|++++..+-.+...+++||||+|||+++...+ +.+.. ...+ +++|++||++|+.|+.+++++... .....
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-~~~~--~vLilvpt~eL~~Q~~~~l~~~~~-~~~~~ 188 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-NYEG--KVLIIVPTTSLVTQMIDDFVDYRL-FPREA 188 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-cCCC--eEEEEECcHHHHHHHHHHHHHhcc-ccccc
Confidence 3444444444433333335556999999999875433 22222 2333 899999999999999999987332 21233
Q ss_pred EEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCC
Q 000849 532 VVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENK 611 (1254)
Q Consensus 532 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~ 611 (1254)
+..+.|+.... .+++|+|+||+++.... ...++++++||+||||++.+ ..++.++..+ +..
T Consensus 189 ~~~i~~g~~~~----~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~---~~~~~il~~~-------~~~ 249 (501)
T PHA02558 189 MHKIYSGTAKD----TDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTG---KSLTSIITKL-------DNC 249 (501)
T ss_pred eeEEecCcccC----CCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccc---hhHHHHHHhh-------hcc
Confidence 43444443322 35799999999984322 22477899999999999874 2333333322 345
Q ss_pred cEEEEecCCCCChHH----HHHhhcCCCCeeEec---CCCCcccccEEEEe--eccC--------CChHHHHHhh-----
Q 000849 612 IRIVALSTSLANAKD----LGEWIGASSHGVFNF---PPGVRPVPLEIQIQ--GVDI--------TNFEARMKAM----- 669 (1254)
Q Consensus 612 ~rii~lSATl~~~~~----l~~~l~~~~~~~~~~---~~~~r~v~l~~~~~--~~~~--------~~~~~~~~~~----- 669 (1254)
.+++|||||+.+... +..++|..... ... .......+..+... .... ..+......+
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~i~~~-v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGDIFKP-VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCCceEE-ecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 678999999975321 23344421100 000 00000011111110 0000 0111111000
Q ss_pred -CHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhcccee
Q 000849 670 -TKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGY 748 (1254)
Q Consensus 670 -~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~ 748 (1254)
+..+...+......+++++|||++.+.++.++..|... +..+..
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~-----------------------------------g~~v~~ 373 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV-----------------------------------YDKVYY 373 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc-----------------------------------CCCEEE
Confidence 01111222222246788999999999998888776431 346889
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeC-cccccccCCc--ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEE
Q 000849 749 LHEGLNKSDQEVVSTLFEAGKIKVCVMS-SSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVIL 822 (1254)
Q Consensus 749 ~h~~l~~~~R~~v~~~F~~g~~~VLVaT-~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil 822 (1254)
+||+++.++|..+++.|++|...||||| +++++|+|+| ..+|....+.|...|+||+||++|.+. ....|+++
T Consensus 374 i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~-~K~~~~i~ 449 (501)
T PHA02558 374 VSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHG-SKSIATVW 449 (501)
T ss_pred EeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCC-CCceEEEE
Confidence 9999999999999999999999999998 8999999999 455566677889999999999999884 34455555
No 89
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=3.8e-28 Score=300.53 Aligned_cols=333 Identities=20% Similarity=0.272 Sum_probs=253.0
Q ss_pred HHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHH
Q 000849 412 YEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRN 491 (1254)
Q Consensus 412 ~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~ 491 (1254)
+...|. ++.|+|-|.+++...+.|.+ .+|. +|||+||++||.+|++
T Consensus 256 l~~~Fg-~~~FR~~Q~eaI~~~l~Gkd-~fvl------------------------------mpTG~GKSLCYQlPA~-- 301 (941)
T KOG0351|consen 256 LKEVFG-HKGFRPNQLEAINATLSGKD-CFVL------------------------------MPTGGGKSLCYQLPAL-- 301 (941)
T ss_pred HHHHhc-cccCChhHHHHHHHHHcCCc-eEEE------------------------------eecCCceeeEeecccc--
Confidence 444554 88999999999998888877 4444 8999999999999987
Q ss_pred HHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-----hcc----cCcEEEEcHhhHHHH
Q 000849 492 HQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LLE----KGQIIISTPEKWDAL 562 (1254)
Q Consensus 492 l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~----~~~Iiv~Tpe~l~~l 562 (1254)
-.++ ..|+|.|..+|+..+...+.+ .++....++++.....+ .+. ..+|++.|||++...
T Consensus 302 ----l~~g--itvVISPL~SLm~DQv~~L~~-----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~ 370 (941)
T KOG0351|consen 302 ----LLGG--VTVVISPLISLMQDQVTHLSK-----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVAS 370 (941)
T ss_pred ----ccCC--ceEEeccHHHHHHHHHHhhhh-----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcc
Confidence 2344 789999999999998877743 37888888887665321 222 348999999998322
Q ss_pred HHhhhcccccce---eeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC--hHHHHHhhcCCCCe
Q 000849 563 SRRWKQRKYVQQ---VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGASSHG 637 (1254)
Q Consensus 563 ~~~~~~~~~l~~---v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~--~~~l~~~l~~~~~~ 637 (1254)
-+.......+.. +.++||||||+.+ .+|+.+..-..++..+....+ .+.+|++|||... .+|+.+-|+.....
T Consensus 371 ~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~ 448 (941)
T KOG0351|consen 371 EGLLESLADLYARGLLALFVIDEAHCVS-QWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPE 448 (941)
T ss_pred cchhhHHHhccCCCeeEEEEecHHHHhh-hhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcc
Confidence 111111122333 8999999999999 777777777777776665544 4899999999853 38999999987655
Q ss_pred eEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCccccc
Q 000849 638 VFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSA 717 (1254)
Q Consensus 638 ~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~ 717 (1254)
++ ..++.+..+...+........ .......+... .+..++||||.+|++|+.++..|...
T Consensus 449 ~~--~~sfnR~NL~yeV~~k~~~~~-------~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~---------- 508 (941)
T KOG0351|consen 449 LF--KSSFNRPNLKYEVSPKTDKDA-------LLDILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSL---------- 508 (941)
T ss_pred ee--cccCCCCCceEEEEeccCccc-------hHHHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHh----------
Confidence 43 344444445555443321111 01122233333 77889999999999999999887542
Q ss_pred ccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-ccccc
Q 000849 718 FLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKM 795 (1254)
Q Consensus 718 ~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~ 795 (1254)
+...++||+||+..+|..|.+.|..++++|+|||=++++|||.| ++.| ++..|
T Consensus 509 -------------------------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lP 563 (941)
T KOG0351|consen 509 -------------------------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLP 563 (941)
T ss_pred -------------------------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCc
Confidence 34688899999999999999999999999999999999999999 5555 99999
Q ss_pred CCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCC
Q 000849 796 LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEA 838 (1254)
Q Consensus 796 ~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~ 838 (1254)
.|++.|.|-+|||||.|. ...|++|+...+......++...
T Consensus 564 ks~E~YYQE~GRAGRDG~--~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 564 KSFEGYYQEAGRAGRDGL--PSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred hhHHHHHHhccccCcCCC--cceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999998 89999999998888888777655
No 90
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=277.73 Aligned_cols=374 Identities=20% Similarity=0.299 Sum_probs=247.3
Q ss_pred ccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccC
Q 000849 450 MFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529 (1254)
Q Consensus 450 ~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~ 529 (1254)
-|-|..+|++.+..++++..++++|||.+|||.+...+|-..++. ...+ -+||++|+++|++|....+..+|....-
T Consensus 509 dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~--VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 509 DFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSD--VVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred ccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-cCCC--EEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 388899999999999999999999999999999998888888877 6667 8999999999999999999888843322
Q ss_pred cEEEEeccccccchhh-cccCcEEEEcHhhHHHHHHhh-hcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHh
Q 000849 530 MCVVELTVETAMDLKL-LEKGQIIISTPEKWDALSRRW-KQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIAS 606 (1254)
Q Consensus 530 ~~v~~~~g~~~~~~~~-~~~~~Iiv~Tpe~l~~l~~~~-~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~ 606 (1254)
.+...+-|+...+.+. .-+++|+|+-||.+..++-.. ....+..+++++|+||+|.++. +.|..+|.++-.
T Consensus 586 ~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l------ 659 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL------ 659 (1330)
T ss_pred ccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh------
Confidence 2333334544433221 237899999999998776552 2344788999999999999998 566666655432
Q ss_pred hcCCCcEEEEecCCCCChHHHHHhhcCC------CCeeEecCC--------------C-------------CcccccE--
Q 000849 607 QVENKIRIVALSTSLANAKDLGEWIGAS------SHGVFNFPP--------------G-------------VRPVPLE-- 651 (1254)
Q Consensus 607 ~~~~~~rii~lSATl~~~~~l~~~l~~~------~~~~~~~~~--------------~-------------~r~v~l~-- 651 (1254)
.++.++++|||+.|+..+..|+... ......+.. + .+.+...
T Consensus 660 ---i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~ 736 (1330)
T KOG0949|consen 660 ---IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLR 736 (1330)
T ss_pred ---cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhh
Confidence 3788999999999999999999721 001111110 0 0000000
Q ss_pred --------EEEeeccCC-------------------Ch-------------HHHH----HhhC---------H-------
Q 000849 652 --------IQIQGVDIT-------------------NF-------------EARM----KAMT---------K------- 671 (1254)
Q Consensus 652 --------~~~~~~~~~-------------------~~-------------~~~~----~~~~---------~------- 671 (1254)
.....+... .+ .... ..+. +
T Consensus 737 ~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~ 816 (1330)
T KOG0949|consen 737 ELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQT 816 (1330)
T ss_pred ccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhh
Confidence 000000000 00 0000 0000 0
Q ss_pred ----------------HHHHHHHhh---h--hcCCCeEEEecChhhHHHHHHHHHHHhhccCccc---c-----------
Q 000849 672 ----------------PTYTAIMQH---A--KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQK---S----------- 716 (1254)
Q Consensus 672 ----------------~~~~~i~~~---~--~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~---~----------- 716 (1254)
.+.+.+... + ...-|+|+|-..|..|+.+|..+...+....... .
T Consensus 817 k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~ 896 (1330)
T KOG0949|consen 817 KEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKR 896 (1330)
T ss_pred hhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 000001000 0 3456899999999999888765433322110000 0
Q ss_pred ---------------------------------ccccc----ChhchhhHHh--hcChHHHHHHhhccceeecCCCCHHH
Q 000849 717 ---------------------------------AFLLC----SAKEVEPHVS--IIQEEMLRATLRLGVGYLHEGLNKSD 757 (1254)
Q Consensus 717 ---------------------------------~~~~~----~~~~l~~~~~--~~~~~~L~~~l~~~v~~~h~~l~~~~ 757 (1254)
+|+.. ....++.... +-.+..+.+.+-.|+++||+||....
T Consensus 897 a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~y 976 (1330)
T KOG0949|consen 897 ARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKY 976 (1330)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHH
Confidence 00000 0000000000 11356777888899999999999999
Q ss_pred HHHHHHHHhcCCceEEEeCcccccccCCcceee--cccc-cCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHh
Q 000849 758 QEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA--TGRK-MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 758 R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~~~V--~~~~-~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
|..|+-.|+.|...||+||.+++-|||+|+++| -|+. -.++..|.||+|||||.|+|..|.++.+--+. ....++
T Consensus 977 R~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~--~kv~rL 1054 (1330)
T KOG0949|consen 977 RSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPR--QKVQRL 1054 (1330)
T ss_pred HHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCcH--HHHHHH
Confidence 999999999999999999999999999998777 3332 27899999999999999999999999886543 345555
Q ss_pred hcC
Q 000849 835 LYE 837 (1254)
Q Consensus 835 l~~ 837 (1254)
+..
T Consensus 1055 lts 1057 (1330)
T KOG0949|consen 1055 LTS 1057 (1330)
T ss_pred HHH
Confidence 443
No 91
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=9.7e-27 Score=284.88 Aligned_cols=319 Identities=18% Similarity=0.189 Sum_probs=249.2
Q ss_pred chHHHHHHHhhcccCCChHHHHHHhhC------CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHH
Q 000849 438 DNVLVAALSRKLMFARLPAKQRITAAL------PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEA 511 (1254)
Q Consensus 438 ~n~lv~~~~~~~~f~~~~~Q~~~~~~i------~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~ 511 (1254)
+.-...+|..++||+.|+-|.++++++ +.+|+.+++|..|-|||.+|+-+++..... ++ +|.+++||.-
T Consensus 580 d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GK--QVAvLVPTTl 654 (1139)
T COG1197 580 DTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GK--QVAVLVPTTL 654 (1139)
T ss_pred ChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CC--eEEEEcccHH
Confidence 445666788999999999999999999 588999999999999999999999988776 55 9999999999
Q ss_pred HHHHHHHHHHHhhccccCcEEEEeccccccc-----hhhccc--CcEEEEcHhhHHHHHHhhhcccccceeeEEEecccc
Q 000849 512 LAKQRYCDWERKFGKELGMCVVELTVETAMD-----LKLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 584 (1254)
Q Consensus 512 La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~-----~~~~~~--~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH 584 (1254)
||+|.++.|+++|... +++|..++.=.+.. .+.++. .||+|+|. +-...+..+.+++++||||-|
T Consensus 655 LA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-------rLL~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 655 LAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-------RLLSKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred hHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-------HhhCCCcEEecCCeEEEechh
Confidence 9999999999999986 89998887644432 122333 39999993 333345678999999999999
Q ss_pred cccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHH
Q 000849 585 LIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEA 664 (1254)
Q Consensus 585 ~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~ 664 (1254)
+.+-.. -.+++.+ ..++-++-||||+-+-.--....|...-.++.-+|..| .|+..++..++..
T Consensus 727 RFGVk~-------KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R-~pV~T~V~~~d~~---- 790 (1139)
T COG1197 727 RFGVKH-------KEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR-LPVKTFVSEYDDL---- 790 (1139)
T ss_pred hcCccH-------HHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC-cceEEEEecCChH----
Confidence 877311 2344444 46889999999964332233445555444454444443 3455555443321
Q ss_pred HHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhc
Q 000849 665 RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRL 744 (1254)
Q Consensus 665 ~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 744 (1254)
-+-++|...+..++++....|..+..+.++..|..... ..
T Consensus 791 -------~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP---------------------------------Ea 830 (1139)
T COG1197 791 -------LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVP---------------------------------EA 830 (1139)
T ss_pred -------HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC---------------------------------ce
Confidence 13345555558899999999999999999988865432 34
Q ss_pred cceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee--cccccCCHHHHHHhhcccCCCCCCCCceEEE
Q 000849 745 GVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA--TGRKMLILTTLLQMMGHAGRPLLDNSEKCVI 821 (1254)
Q Consensus 745 ~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V--~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~ii 821 (1254)
.|++-||.|+..+-+.++..|-+|+.+|||||.+.+.|||+| ++++ +....+..+++.|..||+||... .|.||+
T Consensus 831 rI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~--~AYAYf 908 (1139)
T COG1197 831 RIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK--QAYAYF 908 (1139)
T ss_pred EEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccc--eEEEEE
Confidence 699999999999999999999999999999999999999999 7665 55566899999999999999876 999999
Q ss_pred EccCCc
Q 000849 822 LCHAPH 827 (1254)
Q Consensus 822 l~~~~~ 827 (1254)
++.+.+
T Consensus 909 l~p~~k 914 (1139)
T COG1197 909 LYPPQK 914 (1139)
T ss_pred eecCcc
Confidence 998654
No 92
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=273.96 Aligned_cols=338 Identities=18% Similarity=0.235 Sum_probs=215.9
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
.-.++.+|.+....++ + .|++|+ +|||+|||++|...|+.++.. .+.
T Consensus 60 ~~~lR~YQ~eivq~AL-g-kNtii~------------------------------lPTG~GKTfIAa~Vm~nh~rw-~p~ 106 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-G-KNTIIA------------------------------LPTGSGKTFIAAVIMKNHFEW-RPK 106 (746)
T ss_pred cccccHHHHHHhHHhh-c-CCeEEE------------------------------eecCCCccchHHHHHHHHHhc-CCc
Confidence 5578889988888887 4 667777 999999999999999999988 566
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecccccc-c--hhhcccCcEEEEcHhhHHHHHHhhhccccccee
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM-D--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQV 575 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~-~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v 575 (1254)
+ +||+++|++-|+.|+...+...+. +..+....||... . .......+|+|+||+.+..-+....... ++.+
T Consensus 107 ~--KiVF~aP~~pLv~QQ~a~~~~~~~---~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-ls~f 180 (746)
T KOG0354|consen 107 G--KVVFLAPTRPLVNQQIACFSIYLI---PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-LSDF 180 (746)
T ss_pred c--eEEEeeCCchHHHHHHHHHhhccC---cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-cceE
Confidence 6 999999999999999866665332 2344444455332 2 2344567999999999854444433232 7899
Q ss_pred eEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-hHHHHHhhcCCCCee-------E--ec--C-
Q 000849 576 SLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGASSHGV-------F--NF--P- 642 (1254)
Q Consensus 576 ~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~-~~~l~~~l~~~~~~~-------~--~~--~- 642 (1254)
.++||||||+-.. ...|-.++..+.... ....|++|||||+++ .+.+.+++..--..+ . ++ .
T Consensus 181 s~iv~DE~Hra~k--n~~Y~~Vmr~~l~~k---~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr 255 (746)
T KOG0354|consen 181 SLIVFDECHRTSK--NHPYNNIMREYLDLK---NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELR 255 (746)
T ss_pred EEEEEcccccccc--cccHHHHHHHHHHhh---hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHh
Confidence 9999999998763 344554554443332 234499999999984 344444332110000 0 00 0
Q ss_pred -CCCcccccEEE---------------------------------------------EeeccCCCh---H----------
Q 000849 643 -PGVRPVPLEIQ---------------------------------------------IQGVDITNF---E---------- 663 (1254)
Q Consensus 643 -~~~r~v~l~~~---------------------------------------------~~~~~~~~~---~---------- 663 (1254)
....|+++... ..+...... .
T Consensus 256 ~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ 335 (746)
T KOG0354|consen 256 EHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLA 335 (746)
T ss_pred ccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHH
Confidence 00001100000 000000000 0
Q ss_pred -------------------------HH--H------------HhhC------------HHHHHHHH----hhh--hcCCC
Q 000849 664 -------------------------AR--M------------KAMT------------KPTYTAIM----QHA--KNEKP 686 (1254)
Q Consensus 664 -------------------------~~--~------------~~~~------------~~~~~~i~----~~~--~~~~~ 686 (1254)
.+ . ..|. .+.++.+. ++. .+..+
T Consensus 336 ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR 415 (746)
T KOG0354|consen 336 LLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSR 415 (746)
T ss_pred HHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCcc
Confidence 00 0 0000 00111111 111 35678
Q ss_pred eEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHh
Q 000849 687 ALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFE 766 (1254)
Q Consensus 687 ~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~ 766 (1254)
+||||.+|..|..+-..|... ...+-....|. |.+-+.-..||++.++..+++.|+
T Consensus 416 ~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fi-----------------------Gq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 416 TIIFVETRESALALKKWLLQL-HELGIKAEIFI-----------------------GQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred EEEEEehHHHHHHHHHHHHhh-hhcccccceee-----------------------eccccccccccCHHHHHHHHHHHh
Confidence 999999999999988877541 11111111011 333333347999999999999999
Q ss_pred cCCceEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcH
Q 000849 767 AGKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHK 828 (1254)
Q Consensus 767 ~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~ 828 (1254)
+|+++|||||+++++|+|++ +++| .|+...++...+||.|| ||.. .|+|+++++..+.
T Consensus 472 ~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~---ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 472 DGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR---NSKCVLLTTGSEV 531 (746)
T ss_pred CCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc---CCeEEEEEcchhH
Confidence 99999999999999999999 6666 67766789999999999 9987 7999999985443
No 93
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=7.9e-27 Score=289.93 Aligned_cols=360 Identities=19% Similarity=0.171 Sum_probs=231.9
Q ss_pred hcccCCChHHHHHHhhCCc---ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhh
Q 000849 448 KLMFARLPAKQRITAALPN---IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKF 524 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~---~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~ 524 (1254)
..|+++++.|+++++.+.. ....++.||||||||.+|+.++...+.. ++ ++++++|+++|+.|+++++++.|
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~--~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GK--QALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHh
Confidence 3577889999999999865 4678999999999999999888777665 45 89999999999999999998866
Q ss_pred ccccCcEEEEeccccccchh-----hc--ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC--CCccHHH
Q 000849 525 GKELGMCVVELTVETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLE 595 (1254)
Q Consensus 525 ~~~~~~~v~~~~g~~~~~~~-----~~--~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~--~~g~~~e 595 (1254)
|.++..++|+.+...+ .+ ...+|+|+|++.+ ...+.++++|||||+|..+. ..++.+.
T Consensus 215 ----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---------~~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 215 ----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---------FLPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---------cccccCCCEEEEECCCccccccCcCCCCc
Confidence 4578888888664322 11 2469999999765 13478899999999997764 2344331
Q ss_pred H-HHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCC--cccccEEEEeeccCCChHHHHHhhCHH
Q 000849 596 V-IVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGV--RPVPLEIQIQGVDITNFEARMKAMTKP 672 (1254)
Q Consensus 596 ~-~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~--r~v~l~~~~~~~~~~~~~~~~~~~~~~ 672 (1254)
. -+..++. ...+.++|++|||+ ..+.+...... .-......... ++.| .+.+..............+...
T Consensus 282 ~r~va~~ra----~~~~~~~il~SATp-s~~s~~~~~~g-~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 282 ARDLAVVRA----KLENIPVVLGSATP-SLESLANAQQG-RYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred HHHHHHHHh----hccCCCEEEEcCCC-CHHHHHHHhcc-ceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHH
Confidence 1 1112221 13578999999996 44433332211 11222222221 1111 2333222110000000124566
Q ss_pred HHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcc------------------------cccccccChhchhh
Q 000849 673 TYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQ------------------------KSAFLLCSAKEVEP 728 (1254)
Q Consensus 673 ~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~------------------------~~~~~~~~~~~l~~ 728 (1254)
+++.+.+.+..++++|||+|++..+-.+...-+......... ...+..|....+..
T Consensus 355 l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~ 434 (679)
T PRK05580 355 LLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVP 434 (679)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEE
Confidence 778888888889999999999887654443332211111000 00011121221111
Q ss_pred HHhhc--ChHHHHHHh-hccceeecCCCC--HHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee---cccccC---
Q 000849 729 HVSII--QEEMLRATL-RLGVGYLHEGLN--KSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA---TGRKML--- 796 (1254)
Q Consensus 729 ~~~~~--~~~~L~~~l-~~~v~~~h~~l~--~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V---~~~~~~--- 796 (1254)
...+. -.+.|.+.+ +..+...|+++. ..+++.+++.|++|+.+|||+|+++++|+|+| +.+| +.+.+.
T Consensus 435 ~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 435 VGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred eeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 11111 124455554 568899999986 46799999999999999999999999999999 4444 444332
Q ss_pred -------CHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHh
Q 000849 797 -------ILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 797 -------s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
....|.|++|||||.+. .|.+++.+..++...++.+
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~~--~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAEK--PGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCCC--CCEEEEEeCCCCCHHHHHH
Confidence 34789999999999765 8999999887765555443
No 94
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=5.7e-25 Score=283.22 Aligned_cols=324 Identities=21% Similarity=0.232 Sum_probs=205.6
Q ss_pred CCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcE
Q 000849 452 ARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMC 531 (1254)
Q Consensus 452 ~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~ 531 (1254)
+++++|++++...... ..++++|||+|||.++.+++...+. .+++ ++||++|+++|+.|+.+.+++.++.. +.+
T Consensus 15 ~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~--~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~ 88 (773)
T PRK13766 15 EARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGG--KVLILAPTKPLVEQHAEFFRKFLNIP-EEK 88 (773)
T ss_pred CccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCC--eEEEEeCcHHHHHHHHHHHHHHhCCC-Cce
Confidence 3344444444433222 3444599999999999999887774 3455 99999999999999999998865432 457
Q ss_pred EEEeccccccch--hhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcC
Q 000849 532 VVELTVETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVE 609 (1254)
Q Consensus 532 v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~ 609 (1254)
+..++|+..... ..+.+++|+|+||+.+...+.. ....+.++++||+||||++....+ +..+..+... ..
T Consensus 89 v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~~~~----~~ 160 (773)
T PRK13766 89 IVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYA--YVYIAERYHE----DA 160 (773)
T ss_pred EEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccccc--HHHHHHHHHh----cC
Confidence 888888876543 2356789999999998443322 233577899999999999874322 2223332221 23
Q ss_pred CCcEEEEecCCCCC-hHH---HHHhhcCCCCeeE-ecCCCCcc----cccEEEEe-------------------------
Q 000849 610 NKIRIVALSTSLAN-AKD---LGEWIGASSHGVF-NFPPGVRP----VPLEIQIQ------------------------- 655 (1254)
Q Consensus 610 ~~~rii~lSATl~~-~~~---l~~~l~~~~~~~~-~~~~~~r~----v~l~~~~~------------------------- 655 (1254)
...++++||||+.. ... +.+.|+.....+. .+.+...+ ..+.....
T Consensus 161 ~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~ 240 (773)
T PRK13766 161 KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLK 240 (773)
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999752 233 3334432211000 00000000 00000000
Q ss_pred --ecc--CC---ChHH------H----------------------------------------------HHhh-------
Q 000849 656 --GVD--IT---NFEA------R----------------------------------------------MKAM------- 669 (1254)
Q Consensus 656 --~~~--~~---~~~~------~----------------------------------------------~~~~------- 669 (1254)
+.. .. .... . ....
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~ 320 (773)
T PRK13766 241 ELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGS 320 (773)
T ss_pred HCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCc
Confidence 000 00 0000 0 0000
Q ss_pred ------------------------CHHHHHHHHhhh------hcCCCeEEEecChhhHHHHHHHHHHHhhccCccccccc
Q 000849 670 ------------------------TKPTYTAIMQHA------KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFL 719 (1254)
Q Consensus 670 ------------------------~~~~~~~i~~~~------~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~ 719 (1254)
..+.++.+.+.+ .++.++||||++++.|+.++..|...
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~------------ 388 (773)
T PRK13766 321 KASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE------------ 388 (773)
T ss_pred HHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC------------
Confidence 000111111111 46788999999999999998877321
Q ss_pred ccChhchhhHHhhcChHHHHHHhhccceee--------cCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--cee
Q 000849 720 LCSAKEVEPHVSIIQEEMLRATLRLGVGYL--------HEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHL 789 (1254)
Q Consensus 720 ~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~--------h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~ 789 (1254)
+..+..+ |++|++.+|..+++.|++|+.+|||||+++++|+|+| .++
T Consensus 389 -----------------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~V 445 (773)
T PRK13766 389 -----------------------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLV 445 (773)
T ss_pred -----------------------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEE
Confidence 1122233 4569999999999999999999999999999999999 456
Q ss_pred ecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 790 ATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 790 V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
|+++.+.+...|+||+||+||.+ .|.+++++..+.
T Consensus 446 I~yd~~~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 446 IFYEPVPSEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred EEeCCCCCHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 68998899999999999999987 588888877654
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.94 E-value=9.2e-26 Score=238.33 Aligned_cols=326 Identities=19% Similarity=0.270 Sum_probs=232.3
Q ss_pred chHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHH
Q 000849 410 PSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAIL 489 (1254)
Q Consensus 410 ~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il 489 (1254)
.-+++.|. ...|+|.|..+++..+.+.+ + +++.|||.||++||.+|.+
T Consensus 84 ~ilk~~f~-lekfrplq~~ain~~ma~ed-~------------------------------~lil~tgggkslcyqlpal 131 (695)
T KOG0353|consen 84 DILKEQFH-LEKFRPLQLAAINATMAGED-A------------------------------FLILPTGGGKSLCYQLPAL 131 (695)
T ss_pred HHHHHHhh-HHhcChhHHHHhhhhhccCc-e------------------------------EEEEeCCCccchhhhhhHH
Confidence 34455555 77999999999999998876 3 3337999999999999988
Q ss_pred HHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-h----c----ccCcEEEEcHhhHH
Q 000849 490 RNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-L----L----EKGQIIISTPEKWD 560 (1254)
Q Consensus 490 ~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-~----~----~~~~Iiv~Tpe~l~ 560 (1254)
..+| -+++++|..+|+..+.-.+++ +|+....+....+.... . + ....+++.|||++.
T Consensus 132 ------~adg--~alvi~plislmedqil~lkq-----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekia 198 (695)
T KOG0353|consen 132 ------CADG--FALVICPLISLMEDQILQLKQ-----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIA 198 (695)
T ss_pred ------hcCC--ceEeechhHHHHHHHHHHHHH-----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHH
Confidence 3466 899999999999998888876 46766666554443211 1 1 22389999999982
Q ss_pred ---HHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCCC
Q 000849 561 ---ALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGASS 635 (1254)
Q Consensus 561 ---~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~~ 635 (1254)
.+..+.........+.+|-|||+|+.+ .+|+.+..-...+.-+.++ -++..+|+++||..|- +|..+.|+...
T Consensus 199 ksk~~mnkleka~~~~~~~~iaidevhccs-qwghdfr~dy~~l~ilkrq-f~~~~iigltatatn~vl~d~k~il~ie~ 276 (695)
T KOG0353|consen 199 KSKKFMNKLEKALEAGFFKLIAIDEVHCCS-QWGHDFRPDYKALGILKRQ-FKGAPIIGLTATATNHVLDDAKDILCIEA 276 (695)
T ss_pred HHHHHHHHHHHHhhcceeEEEeecceeehh-hhCcccCcchHHHHHHHHh-CCCCceeeeehhhhcchhhHHHHHHhHHh
Confidence 233332222346678999999999988 4444443333333322223 3578999999998753 66777777654
Q ss_pred CeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCccc
Q 000849 636 HGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQK 715 (1254)
Q Consensus 636 ~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~ 715 (1254)
.+.|..++....+...+...+... +. ....+...|... -.+...||||-+++.|+.++..|..+
T Consensus 277 --~~tf~a~fnr~nl~yev~qkp~n~--dd---~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~-------- 340 (695)
T KOG0353|consen 277 --AFTFRAGFNRPNLKYEVRQKPGNE--DD---CIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNH-------- 340 (695)
T ss_pred --hheeecccCCCCceeEeeeCCCCh--HH---HHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhc--------
Confidence 344555554444444443322211 11 111222223222 45778999999999999999887542
Q ss_pred ccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-ccc
Q 000849 716 SAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGR 793 (1254)
Q Consensus 716 ~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~ 793 (1254)
+...+.+|+.|.+++|.-+.+.+..|+++|+|||-.+++|||-| ++.| +..
T Consensus 341 ---------------------------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 341 ---------------------------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred ---------------------------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc
Confidence 55678899999999999999999999999999999999999999 5555 777
Q ss_pred ccCCHHHHHH-------------------------------------------hhcccCCCCCCCCceEEEEccCCc
Q 000849 794 KMLILTTLLQ-------------------------------------------MMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 794 ~~~s~~~~~Q-------------------------------------------r~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
.|.|+++|.| ..|||||.+. +..|++++.-.+
T Consensus 394 l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~--~a~cilyy~~~d 468 (695)
T KOG0353|consen 394 LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM--KADCILYYGFAD 468 (695)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC--cccEEEEechHH
Confidence 8899999999 7899999876 899999887544
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.1e-25 Score=269.80 Aligned_cols=333 Identities=18% Similarity=0.157 Sum_probs=210.1
Q ss_pred eeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-----hc
Q 000849 472 QLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LL 546 (1254)
Q Consensus 472 v~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~ 546 (1254)
+.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|+ .++..++|+.+...+ .+
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~---g~--~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLAL---GK--SVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHHH
Confidence 45999999999997776665544 55 899999999999999999998764 567788887654322 11
Q ss_pred --ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC--CCccHHHH-HHHHHHHHHhhcCCCcEEEEecCCC
Q 000849 547 --EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEV-IVARMRYIASQVENKIRIVALSTSL 621 (1254)
Q Consensus 547 --~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~--~~g~~~e~-~~~~l~~~~~~~~~~~rii~lSATl 621 (1254)
..++|+|+|+..+ ...+.++++|||||+|.... +.++.+.. -++.++.. ..+.++|++|||+
T Consensus 73 ~~g~~~IVVGTrsal---------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~----~~~~~vil~SATP 139 (505)
T TIGR00595 73 KNGEILVVIGTRSAL---------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK----KFNCPVVLGSATP 139 (505)
T ss_pred HcCCCCEEECChHHH---------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH----hcCCCEEEEeCCC
Confidence 2469999998765 12477899999999998774 33443321 01222211 2578899999994
Q ss_pred CChHHHHHhhcCCCCeeEecCC--CCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHH
Q 000849 622 ANAKDLGEWIGASSHGVFNFPP--GVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARL 699 (1254)
Q Consensus 622 ~~~~~l~~~l~~~~~~~~~~~~--~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~ 699 (1254)
..+.+.......- ....... ..++.| .+.+....... ....+...+++.+.+.+..++++|||+|++..+-.
T Consensus 140 -sles~~~~~~g~~-~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~ 213 (505)
T TIGR00595 140 -SLESYHNAKQKAY-RLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKN 213 (505)
T ss_pred -CHHHHHHHhcCCe-EEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCe
Confidence 5555544332211 1111111 111211 22222221111 00234456778888888899999999999987544
Q ss_pred HHHHHHH------------------------HhhccCcccccccccChhchhhHHhhcC--hHHHHHHh-hccceeecCC
Q 000849 700 TAVDLMI------------------------YSCKDSDQKSAFLLCSAKEVEPHVSIIQ--EEMLRATL-RLGVGYLHEG 752 (1254)
Q Consensus 700 la~~L~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~L~~~l-~~~v~~~h~~ 752 (1254)
+...=+. +|.........+..|....+....-+.+ .+.|.+.+ +..|..+|++
T Consensus 214 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d 293 (505)
T TIGR00595 214 LLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSD 293 (505)
T ss_pred eEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecc
Confidence 3321111 1111111011122222222221111111 24555555 5689999999
Q ss_pred CCHHHH--HHHHHHHhcCCceEEEeCcccccccCCc-ceee---ccccc----------CCHHHHHHhhcccCCCCCCCC
Q 000849 753 LNKSDQ--EVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA---TGRKM----------LILTTLLQMMGHAGRPLLDNS 816 (1254)
Q Consensus 753 l~~~~R--~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V---~~~~~----------~s~~~~~Qr~GRaGR~g~d~~ 816 (1254)
++...+ +.+++.|++|+.+|||+|+++++|+|+| +.+| +.+.. .....+.|++|||||.+. .
T Consensus 294 ~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~--~ 371 (505)
T TIGR00595 294 TTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAED--P 371 (505)
T ss_pred cccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCC--C
Confidence 987766 8999999999999999999999999999 4443 44432 235789999999999875 8
Q ss_pred ceEEEEccCCcHHHHHHh
Q 000849 817 EKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 817 G~~iil~~~~~~~~~~~~ 834 (1254)
|.+++.+..++...++.+
T Consensus 372 g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 372 GQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred CEEEEEeCCCCCHHHHHH
Confidence 999998877665544443
No 97
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=8.1e-25 Score=272.64 Aligned_cols=312 Identities=18% Similarity=0.182 Sum_probs=189.1
Q ss_pred CCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcccc-Cc
Q 000849 452 ARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL-GM 530 (1254)
Q Consensus 452 ~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~-~~ 530 (1254)
++++.|+.+.+....+..+++.||||+|||.+++.++.+.... ...+ +++|..||+++++++++++++.+.... ..
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~--gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLAD--SIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCC--eEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455555443332345567777999999999998877655544 2233 899999999999999999886443321 23
Q ss_pred EEEEeccccccch-----------------------hhc----c---cCcEEEEcHhhHH-HHHHhhhcccccce----e
Q 000849 531 CVVELTVETAMDL-----------------------KLL----E---KGQIIISTPEKWD-ALSRRWKQRKYVQQ----V 575 (1254)
Q Consensus 531 ~v~~~~g~~~~~~-----------------------~~~----~---~~~Iiv~Tpe~l~-~l~~~~~~~~~l~~----v 575 (1254)
++...+|....+. ..+ + -++|+|||+.++. ..+... ..++.. -
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k--h~~lR~~~La~ 440 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK--HRFIRGFGLGR 440 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc--hHHHHHHhhcc
Confidence 5666666432110 011 1 2599999999873 333221 112222 3
Q ss_pred eEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHHHhhcCCCC----e---eE-------
Q 000849 576 SLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLGEWIGASSH----G---VF------- 639 (1254)
Q Consensus 576 ~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~~~l~~~~~----~---~~------- 639 (1254)
++|||||+|.+.......++.++ +.+. ....++|+||||+|.. +.+.+-++.... . ..
T Consensus 441 svvIiDEVHAyD~ym~~lL~~~L---~~l~---~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~ 514 (878)
T PRK09694 441 SVLIVDEVHAYDAYMYGLLEAVL---KAQA---QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNG 514 (878)
T ss_pred CeEEEechhhCCHHHHHHHHHHH---HHHH---hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccc
Confidence 58999999988632222333333 2222 2356799999999854 223332222100 0 00
Q ss_pred --ecCCCC----cccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCc
Q 000849 640 --NFPPGV----RPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSD 713 (1254)
Q Consensus 640 --~~~~~~----r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~ 713 (1254)
.+.... .+.+..+.+........ .-...+.+.+.+.+..+++++|||||++.++.+++.|.+....
T Consensus 515 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~--- 586 (878)
T PRK09694 515 AQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNT--- 586 (878)
T ss_pred ceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCC---
Confidence 000000 01111111111100000 0012344455555577899999999999999999888642110
Q ss_pred ccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHH----HHHHHH-hcCC---ceEEEeCcccccccCC
Q 000849 714 QKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQE----VVSTLF-EAGK---IKVCVMSSSMCWEVPL 785 (1254)
Q Consensus 714 ~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~----~v~~~F-~~g~---~~VLVaT~~l~~Gvdi 785 (1254)
...+..+||+++..+|. .+++.| ++|+ .+|||||+++++|+|+
T Consensus 587 -----------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 587 -----------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred -----------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 12588999999999994 566677 6666 4799999999999999
Q ss_pred cceee-cccccCCHHHHHHhhcccCCCCC
Q 000849 786 TAHLA-TGRKMLILTTLLQMMGHAGRPLL 813 (1254)
Q Consensus 786 p~~~V-~~~~~~s~~~~~Qr~GRaGR~g~ 813 (1254)
+.+++ .. ..++..++||+||+||.+.
T Consensus 638 d~DvlItd--laPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 DFDWLITQ--LCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCeEEEC--CCCHHHHHHHHhccCCCCC
Confidence 95544 32 2468899999999999886
No 98
>PRK14701 reverse gyrase; Provisional
Probab=99.93 E-value=2.3e-25 Score=292.81 Aligned_cols=327 Identities=15% Similarity=0.083 Sum_probs=204.8
Q ss_pred hcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
...|++++.|++++..+-++.+++++||||||||++++++.+.... ++. +++|++||++|+.|+++.++......
T Consensus 75 ~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~--~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 75 ITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGK--KCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred hhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCC--eEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 4566677777777777766667788899999999976655553322 234 89999999999999999998754432
Q ss_pred -cCcEEEEeccccccchh-----hcc--cCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-----------
Q 000849 528 -LGMCVVELTVETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG----------- 588 (1254)
Q Consensus 528 -~~~~v~~~~g~~~~~~~-----~~~--~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~----------- 588 (1254)
.++++..++|+.+...+ .+. .++|+|+||+.+...+... ...+++++||||||++..
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~~~knid~~L~l 225 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLKASKNIDRSLQL 225 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccccccccchhhhc
Confidence 25677888888765432 122 3699999999885544331 126789999999999974
Q ss_pred -CCccHHHH----HH---------------HHHHHHHhhcCCCcE-EEEecCCCCChHHHHHhhcCCCCeeEecCCCCcc
Q 000849 589 -QGGPVLEV----IV---------------ARMRYIASQVENKIR-IVALSTSLANAKDLGEWIGASSHGVFNFPPGVRP 647 (1254)
Q Consensus 589 -~~g~~~e~----~~---------------~~l~~~~~~~~~~~r-ii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~ 647 (1254)
.+.+.+.. ++ ..+.......+...+ ++.+|||.+...+...++.... .+..... ++
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l--~f~v~~~-~~ 302 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL--GFEVGSG-RS 302 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe--EEEecCC-CC
Confidence 11122211 11 011111112233444 6779999976555556653321 1222221 11
Q ss_pred cccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhH---HHHHHHHHHHhhccCcccccccccChh
Q 000849 648 VPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYA---RLTAVDLMIYSCKDSDQKSAFLLCSAK 724 (1254)
Q Consensus 648 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~---~~la~~L~~~~~~~~~~~~~~~~~~~~ 724 (1254)
.+......+........ ..+...+ +. .+.++||||+|++.+ +.++..|...
T Consensus 303 -~lr~i~~~yi~~~~~~k-----~~L~~ll-~~--~g~~gIVF~~t~~~~e~ae~la~~L~~~----------------- 356 (1638)
T PRK14701 303 -ALRNIVDVYLNPEKIIK-----EHVRELL-KK--LGKGGLIFVPIDEGAEKAEEIEKYLLED----------------- 356 (1638)
T ss_pred -CCCCcEEEEEECCHHHH-----HHHHHHH-Hh--CCCCeEEEEeccccchHHHHHHHHHHHC-----------------
Confidence 11111111111111111 1122222 22 256899999998864 6777666421
Q ss_pred chhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeC----cccccccCCc---ceeecccccC-
Q 000849 725 EVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMS----SSMCWEVPLT---AHLATGRKML- 796 (1254)
Q Consensus 725 ~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT----~~l~~Gvdip---~~~V~~~~~~- 796 (1254)
++.+..+||+ |..+++.|++|+++||||| ++++||||+| .++|+++.|.
T Consensus 357 ------------------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~ 413 (1638)
T PRK14701 357 ------------------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKF 413 (1638)
T ss_pred ------------------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCC
Confidence 5678889995 8899999999999999999 4899999999 3566777774
Q ss_pred --CHHHHHH-------------hhcccCCCCCCCCceEEEEccCCcHHHHHHhhcC
Q 000849 797 --ILTTLLQ-------------MMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYE 837 (1254)
Q Consensus 797 --s~~~~~Q-------------r~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~ 837 (1254)
++..|.| +.|||||.|. .+.++..+........++++..
T Consensus 414 ~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 414 RFRVDLEDPTIYRILGLLSEILKIEEELKEGI--PIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CcchhhcccchhhhhcchHHHHHhhhhcccCC--cchhHHHhHHHHHHHHHHHhcc
Confidence 6654444 5599999986 5555544444445555555554
No 99
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.1e-24 Score=260.76 Aligned_cols=324 Identities=15% Similarity=0.068 Sum_probs=207.0
Q ss_pred hcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
.+...+++-|...+-.+..+. |+++.||+|||++|.+|++..... +. .+++++||++||.|.++.+.+.+..
T Consensus 99 ~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~--~v~VvTptreLA~qdae~~~~l~~~- 170 (656)
T PRK12898 99 VLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GL--PVHVITVNDYLAERDAELMRPLYEA- 170 (656)
T ss_pred HhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CC--eEEEEcCcHHHHHHHHHHHHHHHhh-
Confidence 344445555555555554444 556999999999999999977654 33 8999999999999999999886654
Q ss_pred cCcEEEEeccccccchh-hcccCcEEEEcHhhH-HHHHHhhhc-----------------------ccccceeeEEEecc
Q 000849 528 LGMCVVELTVETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQ-----------------------RKYVQQVSLFIIDE 582 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~~-----------------------~~~l~~v~liIiDE 582 (1254)
+|++++.++|+.+...+ ...+++|+|+|...| -+.+|.... ......+.+.||||
T Consensus 171 lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDE 250 (656)
T PRK12898 171 LGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDE 250 (656)
T ss_pred cCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeec
Confidence 59999999998765433 335679999999987 333333211 12345678999999
Q ss_pred cccccC-C-----------Ccc----HHHHHHHHHHHHH-----------------------------------------
Q 000849 583 LHLIGG-Q-----------GGP----VLEVIVARMRYIA----------------------------------------- 605 (1254)
Q Consensus 583 aH~l~~-~-----------~g~----~~e~~~~~l~~~~----------------------------------------- 605 (1254)
+|.+.= + ... .+..+....+.+.
T Consensus 251 vDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~ 330 (656)
T PRK12898 251 ADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRR 330 (656)
T ss_pred ccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHH
Confidence 996541 1 111 1111110000000
Q ss_pred --------------h-----------------hcC-----------------------------------------CCcE
Q 000849 606 --------------S-----------------QVE-----------------------------------------NKIR 613 (1254)
Q Consensus 606 --------------~-----------------~~~-----------------------------------------~~~r 613 (1254)
. .++ .-.+
T Consensus 331 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~k 410 (656)
T PRK12898 331 EELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLR 410 (656)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHH
Confidence 0 000 0123
Q ss_pred EEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEec
Q 000849 614 IVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVP 692 (1254)
Q Consensus 614 ii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~ 692 (1254)
+.|||||.+.. +++.++++.+. ..++ ..+|.........+ ......+... +...+.+....+.++||||+
T Consensus 411 l~GmTGTa~~~~~El~~~y~l~v---v~IP-t~kp~~r~~~~~~v-~~t~~~K~~a----L~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 411 LAGMTGTAREVAGELWSVYGLPV---VRIP-TNRPSQRRHLPDEV-FLTAAAKWAA----VAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred HhcccCcChHHHHHHHHHHCCCe---EEeC-CCCCccceecCCEE-EeCHHHHHHH----HHHHHHHHHhcCCCEEEEeC
Confidence 66777777643 45666666553 1122 22222111100000 0111122221 22333332245789999999
Q ss_pred ChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceE
Q 000849 693 SRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKV 772 (1254)
Q Consensus 693 s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~V 772 (1254)
|++.++.++..|... +..+..+||.++..++..+. |..+..+|
T Consensus 482 t~~~se~L~~~L~~~-----------------------------------gi~~~~Lhg~~~~rE~~ii~--~ag~~g~V 524 (656)
T PRK12898 482 SVAASERLSALLREA-----------------------------------GLPHQVLNAKQDAEEAAIVA--RAGQRGRI 524 (656)
T ss_pred cHHHHHHHHHHHHHC-----------------------------------CCCEEEeeCCcHHHHHHHHH--HcCCCCcE
Confidence 999999999877532 45678899987665555554 55555579
Q ss_pred EEeCcccccccCCc--c--------eeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 773 CVMSSSMCWEVPLT--A--------HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 773 LVaT~~l~~Gvdip--~--------~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
+|||++++||+||+ . +||+++.|.+...|.||+||+||.|. +|.++.+++..+
T Consensus 525 lVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~--~G~s~~~is~eD 587 (656)
T PRK12898 525 TVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGD--PGSYEAILSLED 587 (656)
T ss_pred EEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCC--CeEEEEEechhH
Confidence 99999999999999 2 67799999999999999999999996 899999988644
No 100
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.9e-24 Score=261.59 Aligned_cols=314 Identities=13% Similarity=0.154 Sum_probs=197.7
Q ss_pred CcChHHHHHHHHHhcCC--chHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 421 LFNPIQTQVFAVLYNTE--DNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 421 ~~~~~Q~~~~~~~~~~~--~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
.++|+|.+++..++..+ .+.+++ +|||+|||++++.++.. + .
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIv------------------------------LPtGaGKTlvai~aa~~-l-----~ 298 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIV------------------------------LPCGAGKSLVGVTAACT-V-----K 298 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEE------------------------------eCCCCChHHHHHHHHHH-h-----C
Confidence 57899999999887432 234444 99999999998765542 2 3
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhh------ccccc
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWK------QRKYV 572 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~------~~~~l 572 (1254)
+ ++||++|+..|+.|..+++.+.+. .....+..++|+.... .....+|+|+|+..+....++.. ....-
T Consensus 299 k--~tLILvps~~Lv~QW~~ef~~~~~-l~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 299 K--SCLVLCTSAVSVEQWKQQFKMWST-IDDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred C--CEEEEeCcHHHHHHHHHHHHHhcC-CCCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 3 799999999999999999987543 2245677777764332 12346899999988743211110 01112
Q ss_pred ceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChH----HHHHhhcCCCCeeEecC------
Q 000849 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAK----DLGEWIGASSHGVFNFP------ 642 (1254)
Q Consensus 573 ~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~----~l~~~l~~~~~~~~~~~------ 642 (1254)
..+++||+||+|++.. ..+..++.. .. ....+|||||+...+ ++...+|.. ++...
T Consensus 374 ~~~gLII~DEvH~lpA---~~fr~il~~-------l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~---vye~~~~eLi~ 439 (732)
T TIGR00603 374 REWGLILLDEVHVVPA---AMFRRVLTI-------VQ-AHCKLGLTATLVREDDKITDLNFLIGPK---LYEANWMELQK 439 (732)
T ss_pred ccCCEEEEEccccccH---HHHHHHHHh-------cC-cCcEEEEeecCcccCCchhhhhhhcCCe---eeecCHHHHHh
Confidence 4688999999999862 222222222 22 345699999986432 232333321 22111
Q ss_pred -CCCcccccEEEEeeccCCCh----------HHHHHhhCHHHHHH---HHh-hhhcCCCeEEEecChhhHHHHHHHHHHH
Q 000849 643 -PGVRPVPLEIQIQGVDITNF----------EARMKAMTKPTYTA---IMQ-HAKNEKPALVFVPSRKYARLTAVDLMIY 707 (1254)
Q Consensus 643 -~~~r~v~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~---i~~-~~~~~~~~lVF~~s~~~~~~la~~L~~~ 707 (1254)
...-++.............+ ...+..++...+.. +.+ +-..+.++||||.+...+..++..|
T Consensus 440 ~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L--- 516 (732)
T TIGR00603 440 KGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL--- 516 (732)
T ss_pred CCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---
Confidence 00111111000111110000 01112233222332 222 2136789999999988777766533
Q ss_pred hhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcC-CceEEEeCcccccccCCc
Q 000849 708 SCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAG-KIKVCVMSSSMCWEVPLT 786 (1254)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g-~~~VLVaT~~l~~Gvdip 786 (1254)
++.++||++++.+|..+++.|++| .+++||+|+++.+|+|+|
T Consensus 517 -------------------------------------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP 559 (732)
T TIGR00603 517 -------------------------------------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLP 559 (732)
T ss_pred -------------------------------------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCC
Confidence 356689999999999999999875 889999999999999999
Q ss_pred -ceee-ccccc-CCHHHHHHhhcccCCCCCCCC-----ceEEEEccCCcHH
Q 000849 787 -AHLA-TGRKM-LILTTLLQMMGHAGRPLLDNS-----EKCVILCHAPHKE 829 (1254)
Q Consensus 787 -~~~V-~~~~~-~s~~~~~Qr~GRaGR~g~d~~-----G~~iil~~~~~~~ 829 (1254)
+.+| +.+.+ -|..+|+||+||++|++.+.. ...|.+++.+..+
T Consensus 560 ~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 560 EANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 5555 66665 499999999999999986432 3347777766544
No 101
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=279.22 Aligned_cols=295 Identities=16% Similarity=0.078 Sum_probs=184.6
Q ss_pred hcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
.+.|.|++.|++++..+..+.+++++||||+|||.. .+++...+.. .+. +++|++||++|+.|+++++++... .
T Consensus 76 ~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~--~g~--~alIL~PTreLa~Qi~~~l~~l~~-~ 149 (1176)
T PRK09401 76 KTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAK--KGK--KSYIIFPTRLLVEQVVEKLEKFGE-K 149 (1176)
T ss_pred hcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHh--cCC--eEEEEeccHHHHHHHHHHHHHHhh-h
Confidence 344555555555555555555677779999999964 4455444433 234 999999999999999999997544 4
Q ss_pred cCcEEEEecccccc---c----hhhc--ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-C--------
Q 000849 528 LGMCVVELTVETAM---D----LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q-------- 589 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~---~----~~~~--~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~-------- 589 (1254)
.++.+..+.|+... + ...+ ..++|+|+||+++...... .....++++|+||||++.+ .
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~id~~l~ 225 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNIDKLLY 225 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccchhhHHH
Confidence 47777777665432 1 1112 2479999999999665542 2245699999999999985 1
Q ss_pred -Ccc---HHHHHHHHHH-------------HHHhh----cCCCcEEEEecCCCCCh-HH---HHHhhcCCCCeeEecCCC
Q 000849 590 -GGP---VLEVIVARMR-------------YIASQ----VENKIRIVALSTSLANA-KD---LGEWIGASSHGVFNFPPG 644 (1254)
Q Consensus 590 -~g~---~~e~~~~~l~-------------~~~~~----~~~~~rii~lSATl~~~-~~---l~~~l~~~~~~~~~~~~~ 644 (1254)
.|. .++.++..++ .+... .+...|++++|||.+.. .. +.+.++. .....
T Consensus 226 ~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~------~v~~~ 299 (1176)
T PRK09401 226 LLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF------EVGSP 299 (1176)
T ss_pred hCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE------EecCc
Confidence 122 2333333221 11110 11267899999999642 11 1222221 11111
Q ss_pred Ccc-cccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhh---HHHHHHHHHHHhhccCcccccccc
Q 000849 645 VRP-VPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKY---ARLTAVDLMIYSCKDSDQKSAFLL 720 (1254)
Q Consensus 645 ~r~-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~---~~~la~~L~~~~~~~~~~~~~~~~ 720 (1254)
... -.+...+.... +... .+.. +... .+.++||||++++. ++.++..|...
T Consensus 300 ~~~~rnI~~~yi~~~--~k~~-------~L~~-ll~~--l~~~~LIFv~t~~~~~~ae~l~~~L~~~------------- 354 (1176)
T PRK09401 300 VFYLRNIVDSYIVDE--DSVE-------KLVE-LVKR--LGDGGLIFVPSDKGKEYAEELAEYLEDL------------- 354 (1176)
T ss_pred ccccCCceEEEEEcc--cHHH-------HHHH-HHHh--cCCCEEEEEecccChHHHHHHHHHHHHC-------------
Confidence 000 01111111111 1111 1112 2222 24689999999877 88888766431
Q ss_pred cChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEe----CcccccccCCcc---eeeccc
Q 000849 721 CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVM----SSSMCWEVPLTA---HLATGR 793 (1254)
Q Consensus 721 ~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVa----T~~l~~Gvdip~---~~V~~~ 793 (1254)
++.+..+||+| ++ .++.|++|+++|||| |++++||+|+|. ++|+++
T Consensus 355 ----------------------gi~v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 355 ----------------------GINAELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYG 407 (1176)
T ss_pred ----------------------CCcEEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeC
Confidence 56788999999 22 349999999999999 689999999993 566888
Q ss_pred ccC------CHHHHHHhhcccCC
Q 000849 794 KML------ILTTLLQMMGHAGR 810 (1254)
Q Consensus 794 ~~~------s~~~~~Qr~GRaGR 810 (1254)
.|. ....+.||+||+-+
T Consensus 408 vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 408 VPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCCEEEeccccccCHHHHHHHHh
Confidence 773 44778999999863
No 102
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.9e-24 Score=261.47 Aligned_cols=324 Identities=16% Similarity=0.130 Sum_probs=203.0
Q ss_pred hcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
.+...+++.|.-..-.+.++. |+++.||+|||++|.+|++..... +. .+.+++||+.||.|.++.+.+.+..
T Consensus 74 ~~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~--~v~VvTpt~~LA~qd~e~~~~l~~~- 145 (790)
T PRK09200 74 VLGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GK--GVHLITVNDYLAKRDAEEMGQVYEF- 145 (790)
T ss_pred HhCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CC--CeEEEeCCHHHHHHHHHHHHHHHhh-
Confidence 334444555544444333332 666999999999999999865555 44 8999999999999999999886665
Q ss_pred cCcEEEEeccccc-cc-hhhcccCcEEEEcHhhH-HHHHHh-h---hcccccceeeEEEecccccccC-C-Ccc------
Q 000849 528 LGMCVVELTVETA-MD-LKLLEKGQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIGG-Q-GGP------ 592 (1254)
Q Consensus 528 ~~~~v~~~~g~~~-~~-~~~~~~~~Iiv~Tpe~l-~~l~~~-~---~~~~~l~~v~liIiDEaH~l~~-~-~g~------ 592 (1254)
+|++++.+.|+.+ .. .+...+++|+++||+.+ -++++. . .....+..+.++||||||.+.= + +.|
T Consensus 146 lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~ 225 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGK 225 (790)
T ss_pred cCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCC
Confidence 5999999999887 43 33445679999999998 333332 2 1123567899999999997752 1 111
Q ss_pred --HHHHHHHHHHHHHhhcCC--------CcE-------------------------------------------------
Q 000849 593 --VLEVIVARMRYIASQVEN--------KIR------------------------------------------------- 613 (1254)
Q Consensus 593 --~~e~~~~~l~~~~~~~~~--------~~r------------------------------------------------- 613 (1254)
.-..+......+...+.. ..+
T Consensus 226 ~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 226 PRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred CccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 000011111111111110 111
Q ss_pred ------------------------------------------------------------EEEecCCCCCh-HHHHHhhc
Q 000849 614 ------------------------------------------------------------IVALSTSLANA-KDLGEWIG 632 (1254)
Q Consensus 614 ------------------------------------------------------------ii~lSATl~~~-~~l~~~l~ 632 (1254)
+.|||.|.... +++.+..+
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 22222222110 11111111
Q ss_pred CCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccC
Q 000849 633 ASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712 (1254)
Q Consensus 633 ~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~ 712 (1254)
.. +...+ ..+|+...-. ...-......+. ..+...+.+....+.|+||||+|++.++.++..|...
T Consensus 386 l~---v~~IP-t~kp~~r~d~-~~~i~~~~~~K~----~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~----- 451 (790)
T PRK09200 386 ME---VVQIP-TNRPIIRIDY-PDKVFVTLDEKY----KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA----- 451 (790)
T ss_pred Cc---EEECC-CCCCcccccC-CCeEEcCHHHHH----HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-----
Confidence 11 11111 1122110000 000000111111 1222333332256899999999999999999877532
Q ss_pred cccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCC---c-c-
Q 000849 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPL---T-A- 787 (1254)
Q Consensus 713 ~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdi---p-~- 787 (1254)
+..+..+||.+.+.++..+...++.| +|+|||++++||+|+ | +
T Consensus 452 ------------------------------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~ 499 (790)
T PRK09200 452 ------------------------------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVH 499 (790)
T ss_pred ------------------------------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccc
Confidence 45678899999999999888888777 799999999999999 4 3
Q ss_pred -----eeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 788 -----HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 788 -----~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
+||+++.|.+...|.||+||+||.|. +|.++.+++..+
T Consensus 500 ~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~--~G~s~~~is~eD 542 (790)
T PRK09200 500 ELGGLAVIGTERMESRRVDLQLRGRSGRQGD--PGSSQFFISLED 542 (790)
T ss_pred cccCcEEEeccCCCCHHHHHHhhccccCCCC--CeeEEEEEcchH
Confidence 67788899999999999999999986 899998887654
No 103
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=99.92 E-value=1.5e-24 Score=248.95 Aligned_cols=187 Identities=44% Similarity=0.777 Sum_probs=170.8
Q ss_pred ccHHHHHHHhccCCccCC-CCCCChhHHHHHHHHHHHccccccCccccccC-----cHHHHHHHHHHHHHhcCcHHHHHH
Q 000849 193 KIKMELAKLLDRVPIPVK-ESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQLAEK 266 (1254)
Q Consensus 193 ~e~~~l~~l~~~~~~~~~-~~~~~~~~Kv~~Llq~~is~~~~~~~~l~~D~-----~a~ri~~a~~ei~~~~~~~~~a~~ 266 (1254)
+|..++.+|...+|++.. ...+.++.|+++||||||+|++++.+++.+|+ +|.||++|++|||..+||+..+.+
T Consensus 55 ~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~ 134 (312)
T smart00611 55 EEDLLLEELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALN 134 (312)
T ss_pred cHHHHHHHHHHhCCcCcCCCCCCCchHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 677889999988887665 45678999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccccCCCCHHHHHHHHhcCCC----------------CC-----------------------
Q 000849 267 ALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF----------------LG----------------------- 307 (1254)
Q Consensus 267 ~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~----------------~g----------------------- 307 (1254)
+++|++||.+|+|++.+||+||||++++.+++|+++|+. +|
T Consensus 135 ~l~L~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~ 214 (312)
T smart00611 135 ALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEI 214 (312)
T ss_pred HHHHHHHHHHhhCCCCCccccCCCCCHHHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEE
Confidence 999999999999999999999999999999999998853 11
Q ss_pred --CCCccccceEEEEEeeeeeecccccCcceEEEEEEEeCCCCeEEEEEeeeeccccCCcceEEEEEeeCCCCC
Q 000849 308 --KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPL 379 (1254)
Q Consensus 308 --~pi~~~~~~~~~~~~~~~~w~~~~~g~~~~f~~~ved~~~~~il~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 379 (1254)
+|+|..+.++.++++++|.|+.++||+.|.||+||+|.++++|+|.+++.+++....+...++|.+|..++.
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~ 288 (312)
T smart00611 215 SLEPITRTVLGVEVTLTVDLTWDDEIHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN 288 (312)
T ss_pred EEcCCcccccCceEEEEEEEEEcccccCCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCc
Confidence 189999999999999999999999999999999999999999999999999887766678889999877655
No 104
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.92 E-value=1.1e-23 Score=254.67 Aligned_cols=320 Identities=15% Similarity=0.147 Sum_probs=197.7
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v 532 (1254)
+.++|.+++..+.-+...+++++||+|||++|.+|++..... +. .++|++|+++||.|.++.+...+.. +|+++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---g~--~V~VVTpn~yLA~Rdae~m~~l~~~-LGLsv 142 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---GK--GAMLVTTNDYLAKRDAEEMGPVYEW-LGLTV 142 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---CC--ceEEeCCCHHHHHHHHHHHHHHHhh-cCCcE
Confidence 455555555555444446888999999999999998765554 34 7999999999999999988775544 59999
Q ss_pred EEecccc-----ccc-hhhcccCcEEEEcHhhH-HHHHHhh----hcccccceeeEEEecccccccC-C-C------ccH
Q 000849 533 VELTVET-----AMD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIGG-Q-G------GPV 593 (1254)
Q Consensus 533 ~~~~g~~-----~~~-~~~~~~~~Iiv~Tpe~l-~~l~~~~----~~~~~l~~v~liIiDEaH~l~~-~-~------g~~ 593 (1254)
+...++. ... .+...+++|+++||+.| .++++.. .....+..+.++|+||||.+.- + + |+.
T Consensus 143 ~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~ 222 (762)
T TIGR03714 143 SLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAP 222 (762)
T ss_pred EEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCC
Confidence 8877652 111 22335789999999998 4444332 1123467899999999998842 1 1 110
Q ss_pred -H-HHHHHHHHHHHhhcCC--------C----------------------------------------------------
Q 000849 594 -L-EVIVARMRYIASQVEN--------K---------------------------------------------------- 611 (1254)
Q Consensus 594 -~-e~~~~~l~~~~~~~~~--------~---------------------------------------------------- 611 (1254)
. ..+......+...+.. .
T Consensus 223 ~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYi 302 (762)
T TIGR03714 223 RVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYV 302 (762)
T ss_pred ccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 0 0011111111111110 0
Q ss_pred ---------------------------------------------------------cEEEEecCCCCC-hHHHHHhhcC
Q 000849 612 ---------------------------------------------------------IRIVALSTSLAN-AKDLGEWIGA 633 (1254)
Q Consensus 612 ---------------------------------------------------------~rii~lSATl~~-~~~l~~~l~~ 633 (1254)
.++.|||+|... ..++.+..+.
T Consensus 303 V~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l 382 (762)
T TIGR03714 303 VTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSL 382 (762)
T ss_pred EECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCC
Confidence 113344444221 1222222221
Q ss_pred CCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCc
Q 000849 634 SSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSD 713 (1254)
Q Consensus 634 ~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~ 713 (1254)
. +... |..+|+...-.. ..-......+.. .+...+.+....+.|+||||+|++.++.++..|...
T Consensus 383 ~---v~~I-Pt~kp~~r~d~~-d~i~~~~~~K~~----ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~------ 447 (762)
T TIGR03714 383 S---VVKI-PTNKPIIRIDYP-DKIYATLPEKLM----ATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE------ 447 (762)
T ss_pred C---EEEc-CCCCCeeeeeCC-CeEEECHHHHHH----HHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC------
Confidence 1 1111 122222111100 000011111111 223333333367899999999999999998877432
Q ss_pred ccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-c-----
Q 000849 714 QKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-A----- 787 (1254)
Q Consensus 714 ~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~----- 787 (1254)
+..+..+||.+.+.+|..+.+.++.| .|+|||++++||+|+| .
T Consensus 448 -----------------------------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~ 496 (762)
T TIGR03714 448 -----------------------------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAE 496 (762)
T ss_pred -----------------------------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccc
Confidence 45677899999999999998888777 7999999999999999 1
Q ss_pred ----eee-cccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 788 ----HLA-TGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 788 ----~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
++| +++.|....+ .||+|||||.|. +|.++.+++..+
T Consensus 497 ~GGL~vIit~~~ps~rid-~qr~GRtGRqG~--~G~s~~~is~eD 538 (762)
T TIGR03714 497 LGGLAVIGTERMENSRVD-LQLRGRSGRQGD--PGSSQFFVSLED 538 (762)
T ss_pred cCCeEEEEecCCCCcHHH-HHhhhcccCCCC--ceeEEEEEccch
Confidence 333 6666655555 999999999986 899999888654
No 105
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=3.7e-23 Score=248.42 Aligned_cols=325 Identities=16% Similarity=0.091 Sum_probs=208.0
Q ss_pred hhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcc
Q 000849 447 RKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK 526 (1254)
Q Consensus 447 ~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~ 526 (1254)
+.+...+++-|.-..-.+.++ .|++++||+|||++|.+|++-.... +. .+.+++|++.||.|.++.+.+.+..
T Consensus 51 R~lg~~p~~vQlig~~~l~~G--~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~VvTpt~~LA~qdae~~~~l~~~ 123 (745)
T TIGR00963 51 RVLGMRPFDVQLIGGIALHKG--KIAEMKTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAEWMGQVYRF 123 (745)
T ss_pred HHhCCCccchHHhhhhhhcCC--ceeeecCCCccHHHHHHHHHHHHHh---CC--CEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 344455555555554444443 3778999999999999999644333 33 6999999999999999999886655
Q ss_pred ccCcEEEEeccccccchh-hcccCcEEEEcHhhH-HHHHHhhh----cccccceeeEEEecccccccC-C-C------cc
Q 000849 527 ELGMCVVELTVETAMDLK-LLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGG-Q-G------GP 592 (1254)
Q Consensus 527 ~~~~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~v~liIiDEaH~l~~-~-~------g~ 592 (1254)
+|++++.++|+.+...+ ..-.++|+|+||++| .++++... ....+..+.++||||+|.++- + | |+
T Consensus 124 -LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 124 -LGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred -CCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 59999999998775533 334579999999998 66666531 123578899999999998763 1 1 11
Q ss_pred --HHHHHHHHHHHHHhhcCC--------CcE-------------------------------------------------
Q 000849 593 --VLEVIVARMRYIASQVEN--------KIR------------------------------------------------- 613 (1254)
Q Consensus 593 --~~e~~~~~l~~~~~~~~~--------~~r------------------------------------------------- 613 (1254)
.-..+......+.+.+.. ..+
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 001111111111111110 111
Q ss_pred ------------------------------------------------------------EEEecCCCCCh-HHHHHhhc
Q 000849 614 ------------------------------------------------------------IVALSTSLANA-KDLGEWIG 632 (1254)
Q Consensus 614 ------------------------------------------------------------ii~lSATl~~~-~~l~~~l~ 632 (1254)
+.|||+|.... +++.+..+
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 12222222100 11111111
Q ss_pred CCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccC
Q 000849 633 ASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712 (1254)
Q Consensus 633 ~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~ 712 (1254)
.. +... |..+|+..... ...-......+. ..+...+.+....+.|+||||+|...++.++..|...
T Consensus 363 l~---vv~I-Ptnkp~~R~d~-~d~i~~t~~~k~----~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~----- 428 (745)
T TIGR00963 363 LE---VVVV-PTNRPVIRKDL-SDLVYKTEEEKW----KAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER----- 428 (745)
T ss_pred CC---EEEe-CCCCCeeeeeC-CCeEEcCHHHHH----HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc-----
Confidence 11 1111 11111100000 000000111111 1233333333378999999999999999999877532
Q ss_pred cccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcc-----
Q 000849 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA----- 787 (1254)
Q Consensus 713 ~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~----- 787 (1254)
+.....+||. +.+|+..+..|..+...|+|||++++||+||+.
T Consensus 429 ------------------------------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~ 476 (745)
T TIGR00963 429 ------------------------------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKE 476 (745)
T ss_pred ------------------------------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhh
Confidence 3456778998 789999999999999999999999999999997
Q ss_pred ----eeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 788 ----HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 788 ----~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
+||....|.|...+.|++||+||.|. +|.+..+.+..+
T Consensus 477 ~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~--~G~s~~~ls~eD 518 (745)
T TIGR00963 477 LGGLYVIGTERHESRRIDNQLRGRSGRQGD--PGSSRFFLSLED 518 (745)
T ss_pred cCCcEEEecCCCCcHHHHHHHhccccCCCC--CcceEEEEeccH
Confidence 78888889999999999999999996 899888887664
No 106
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.1e-22 Score=212.42 Aligned_cols=298 Identities=18% Similarity=0.227 Sum_probs=207.0
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 543 (1254)
+.+....++.|-||+|||......|-..+.+ ++ ++.+..|+...+.+.+.++++.|. +..+..++|+.....
T Consensus 113 i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~--~vciASPRvDVclEl~~Rlk~aF~---~~~I~~Lyg~S~~~f 184 (441)
T COG4098 113 IKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GG--RVCIASPRVDVCLELYPRLKQAFS---NCDIDLLYGDSDSYF 184 (441)
T ss_pred HHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CC--eEEEecCcccchHHHHHHHHHhhc---cCCeeeEecCCchhc
Confidence 3445566667999999999887777766666 66 999999999999999999999886 567888999876553
Q ss_pred hhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 000849 544 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623 (1254)
Q Consensus 544 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~ 623 (1254)
.++++|+|..++. |- -+.++++||||+|...-.....+...+..-+ ....-+|.+|||.++
T Consensus 185 ----r~plvVaTtHQLl---rF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ar------k~~g~~IylTATp~k 245 (441)
T COG4098 185 ----RAPLVVATTHQLL---RF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKAR------KKEGATIYLTATPTK 245 (441)
T ss_pred ----cccEEEEehHHHH---HH------HhhccEEEEeccccccccCCHHHHHHHHHhh------cccCceEEEecCChH
Confidence 3799999988873 32 3468999999999887544445554444332 235667999999764
Q ss_pred hHHHHHhhcCCCCeeEecCCCC----cccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHH
Q 000849 624 AKDLGEWIGASSHGVFNFPPGV----RPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARL 699 (1254)
Q Consensus 624 ~~~l~~~l~~~~~~~~~~~~~~----r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~ 699 (1254)
. +.+-+..........+..+ -|+|-.+........ . ....+...++..+.++...+.|++||+++....+.
T Consensus 246 ~--l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~--l-~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq 320 (441)
T COG4098 246 K--LERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKK--L-QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQ 320 (441)
T ss_pred H--HHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHH--h-hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHH
Confidence 3 2222222111122222222 233333322211111 0 01122334566666666789999999999999999
Q ss_pred HHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCccc
Q 000849 700 TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779 (1254)
Q Consensus 700 la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l 779 (1254)
++..|..... ...++..|+. ...|.+..+.|++|++++|++|.++
T Consensus 321 ~a~~lk~~~~---------------------------------~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTIL 365 (441)
T COG4098 321 VAAALKKKLP---------------------------------KETIASVHSE--DQHRKEKVEAFRDGKITLLITTTIL 365 (441)
T ss_pred HHHHHHhhCC---------------------------------ccceeeeecc--CccHHHHHHHHHcCceEEEEEeehh
Confidence 9987744322 1246677775 4678889999999999999999999
Q ss_pred ccccCCc-cee-eccccc--CCHHHHHHhhcccCCCCCCCCceEEEEccCCcH
Q 000849 780 CWEVPLT-AHL-ATGRKM--LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHK 828 (1254)
Q Consensus 780 ~~Gvdip-~~~-V~~~~~--~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~ 828 (1254)
+|||.+| +++ |.|... ++.+.++|++||+||.-....|.++.|-....+
T Consensus 366 ERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 366 ERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred hcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 9999999 443 345444 899999999999999887778888877554443
No 107
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.9e-24 Score=215.48 Aligned_cols=291 Identities=17% Similarity=0.185 Sum_probs=197.8
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|.+|..+|.+|+|....|-+ ++++|..|.|||.+|.++.++.+.- -.
T Consensus 62 fehpsevqhecipqailgmd-------------------------------vlcqaksgmgktavfvl~tlqqiep--v~ 108 (387)
T KOG0329|consen 62 FEHPSEVQHECIPQAILGMD-------------------------------VLCQAKSGMGKTAVFVLATLQQIEP--VD 108 (387)
T ss_pred CCCchHhhhhhhhHHhhcch-------------------------------hheecccCCCceeeeehhhhhhcCC--CC
Confidence 99999999999999877755 3444999999999999999988875 34
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccc-cCcEEEEeccccccc--hhhccc-CcEEEEcHhhHHHHHHhhhcccccce
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKE-LGMCVVELTVETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQ 574 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~-~~~~v~~~~g~~~~~--~~~~~~-~~Iiv~Tpe~l~~l~~~~~~~~~l~~ 574 (1254)
|.+.+++++.||+||-|+.+++.+ |.++ .++++..+.|+.... ...+.+ ++|+|+||+++..+.|.. ...+++
T Consensus 109 g~vsvlvmchtrelafqi~~ey~r-fskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k--~l~lk~ 185 (387)
T KOG0329|consen 109 GQVSVLVMCHTRELAFQISKEYER-FSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR--SLNLKN 185 (387)
T ss_pred CeEEEEEEeccHHHHHHHHHHHHH-HHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc--cCchhh
Confidence 567899999999999999888775 4443 578999999997653 344444 599999999999998873 345899
Q ss_pred eeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccccEEE
Q 000849 575 VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVPLEIQ 653 (1254)
Q Consensus 575 v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~l~~~ 653 (1254)
++.+|+||++.+.+.- + +...+..+.+.++...|+..+|||+++. .-++.-+-.++..+|.-.. . .+.
T Consensus 186 vkhFvlDEcdkmle~l----D-MrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE--~--KLt-- 254 (387)
T KOG0329|consen 186 VKHFVLDECDKMLEQL----D-MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDE--A--KLT-- 254 (387)
T ss_pred cceeehhhHHHHHHHH----H-HHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccch--h--hhh--
Confidence 9999999999877411 0 1233455666678899999999999743 3333333222212211000 0 000
Q ss_pred EeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhc
Q 000849 654 IQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSII 733 (1254)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 733 (1254)
..+.......-.-...++.+++.+ .. -.-.+++||+.|...
T Consensus 255 LHGLqQ~YvkLke~eKNrkl~dLL-d~-LeFNQVvIFvKsv~R------------------------------------- 295 (387)
T KOG0329|consen 255 LHGLQQYYVKLKENEKNRKLNDLL-DV-LEFNQVVIFVKSVQR------------------------------------- 295 (387)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhh-hh-hhhcceeEeeehhhh-------------------------------------
Confidence 000000000000011112222222 22 234577788755321
Q ss_pred ChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCCC
Q 000849 734 QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRP 811 (1254)
Q Consensus 734 ~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~ 811 (1254)
++ | ..+ +|||+.+++|+|+. .++| +|+.|-+..+|+||+|||||.
T Consensus 296 -------------------l~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrf 342 (387)
T KOG0329|consen 296 -------------------LS----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 342 (387)
T ss_pred -------------------hh----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcc
Confidence 00 2 123 89999999999999 5555 999999999999999999999
Q ss_pred CCCCCceEEEEccCCcHHH
Q 000849 812 LLDNSEKCVILCHAPHKEY 830 (1254)
Q Consensus 812 g~d~~G~~iil~~~~~~~~ 830 (1254)
|. .|.++.+.+..+...
T Consensus 343 Gt--kglaitfvs~e~da~ 359 (387)
T KOG0329|consen 343 GT--KGLAITFVSDENDAK 359 (387)
T ss_pred cc--ccceeehhcchhhHH
Confidence 86 899999988665443
No 108
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=249.18 Aligned_cols=294 Identities=24% Similarity=0.276 Sum_probs=209.1
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+-++|+.||.+|++|.+.|++||||||||||+||++|||+.-.+ |+ ..++..+|+||+|||||.|.|+.|.+|
T Consensus 532 LT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~-----g~-~~l~~~~YkQM~GRAGR~gidT~Gdsi 605 (1008)
T KOG0950|consen 532 LTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYV-----GR-EFLTRLEYKQMVGRAGRTGIDTLGDSI 605 (1008)
T ss_pred cccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcc-----cc-chhhhhhHHhhhhhhhhcccccCcceE
Confidence 567899999999999999999999999999999999999986333 32 568999999999999999999999999
Q ss_pred EEecCCcHHHHHHhhcCCC-CchhhHHH----HHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCc-
Q 000849 81 IITGHSELQYYLSLMNQQL-PIESQFVS----KLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEV- 154 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~-~i~s~l~~----~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~- 154 (1254)
++++..++....+++..+. |+.|++.. .....+...|+.|...+.+|...+...|+++.+... .+-....+.
T Consensus 606 LI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~~--~~~~~~le~~ 683 (1008)
T KOG0950|consen 606 LIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEKP--ENVREQLEME 683 (1008)
T ss_pred EEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccch--hhhhhcccch
Confidence 9999988888888888877 78999865 334678899999999999999999999999987421 111111110
Q ss_pred Cc-----hhH--HHHHHHHHH-HHHHHhhh----cCcccccCccCceeec------------------------------
Q 000849 155 LD-----ITL--GERITDLIH-TAANVLDR----NNLVKYGRKSGYFQSE------------------------------ 192 (1254)
Q Consensus 155 ~~-----~~~--~~~~~~~~~-~~~~~L~~----~~~i~~~~~~~~~~~t------------------------------ 192 (1254)
.+ +.. ..-..|.+. ...+.+.+ .|-..+. ..+.++
T Consensus 684 s~ql~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~---~~~~~~~a~~l~~~L~~~~~~~vle~~lh~lylvtP 760 (1008)
T KOG0950|consen 684 SDQLVINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFN---AGSDPEVANILFADLKKSLPQLVLESSLHLLYLVTP 760 (1008)
T ss_pred hhhhccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhc---ccCChhhhHHHHHHHHHhhhccccccccceeeeecc
Confidence 00 000 001112222 11111111 1111000 001110
Q ss_pred -cc----H----------------HHHHHHhccCC--c--cCCCCC-----C---ChhHHHHHHHHHHHccccc----cC
Q 000849 193 -KI----K----------------MELAKLLDRVP--I--PVKESL-----E---EPSAKINVLLQTYISQLKL----EG 235 (1254)
Q Consensus 193 -~e----~----------------~~l~~l~~~~~--~--~~~~~~-----~---~~~~Kv~~Llq~~is~~~~----~~ 235 (1254)
.| . ..+.++.+... + -+++.. . .-..-+++.||.++++.++ ++
T Consensus 761 ~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~k 840 (1008)
T KOG0950|consen 761 YLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVAEK 840 (1008)
T ss_pred hHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 00 0 01111111000 0 011110 0 1134488999999999998 66
Q ss_pred ccccccC------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCcccccCCCCHHHHHHHHhcCCC
Q 000849 236 LSLTSDM------SAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF 305 (1254)
Q Consensus 236 ~~l~~D~------~a~ri~~a~~ei~~~~~~~~~a~~~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~ 305 (1254)
|.....+ ++++.+.++..+|...+|......+-++.+++..|.-.+..||+.+|++...++|.|+.+|++
T Consensus 841 Yk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~ 916 (1008)
T KOG0950|consen 841 YKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVPDVKAERARQLFKAGFT 916 (1008)
T ss_pred hCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcCchhHHHHHHHHHHhhcc
Confidence 7665544 999999999999999999977777778999999999999999999999999999999999998
No 109
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=4.8e-22 Score=257.34 Aligned_cols=283 Identities=15% Similarity=0.073 Sum_probs=173.2
Q ss_pred hcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
..-|.|++.|++++..+-.+.+++++||||||||. |.+++...+.. .+. +++|++||++||.|+++.+++....
T Consensus 74 ~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~--~vLIL~PTreLa~Qi~~~l~~l~~~- 147 (1171)
T TIGR01054 74 AVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGK--RCYIILPTTLLVIQVAEKISSLAEK- 147 (1171)
T ss_pred hcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--cCC--eEEEEeCHHHHHHHHHHHHHHHHHh-
Confidence 44566666666666666666667777999999997 55666655543 233 9999999999999999999885543
Q ss_pred cCcEE---EEeccccccchh-----hcc--cCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CC------
Q 000849 528 LGMCV---VELTVETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QG------ 590 (1254)
Q Consensus 528 ~~~~v---~~~~g~~~~~~~-----~~~--~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~------ 590 (1254)
.|+.+ +.++|+.+...+ .+. .++|+|+||+++........ .+++++|+||||.+.+ .+
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~vd~il 222 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNVDKLL 222 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccHHHHH
Confidence 35443 356787654422 122 37999999999865544321 1799999999999985 21
Q ss_pred ---cc---HHHHHHHHH---------------HHHHhhcCCCc--EEEEecCCC-CChHHHHHhhcCCCCeeEecCCCCc
Q 000849 591 ---GP---VLEVIVARM---------------RYIASQVENKI--RIVALSTSL-ANAKDLGEWIGASSHGVFNFPPGVR 646 (1254)
Q Consensus 591 ---g~---~~e~~~~~l---------------~~~~~~~~~~~--rii~lSATl-~~~~~l~~~l~~~~~~~~~~~~~~r 646 (1254)
|. .++.++..+ ..+.+..+... .++++|||. |.... ..++.... + +.......
T Consensus 223 ~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r~ll-~-~~v~~~~~ 299 (1171)
T TIGR01054 223 KLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFRELL-G-FEVGGGSD 299 (1171)
T ss_pred HHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHccccc-c-eEecCccc
Confidence 11 122222111 11111223333 367789994 43211 11221111 1 11111111
Q ss_pred cc-ccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecCh---hhHHHHHHHHHHHhhccCcccccccccC
Q 000849 647 PV-PLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSR---KYARLTAVDLMIYSCKDSDQKSAFLLCS 722 (1254)
Q Consensus 647 ~v-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~---~~~~~la~~L~~~~~~~~~~~~~~~~~~ 722 (1254)
.. .+...+. ..... . ..+.. +.+. .+.++||||+++ +.|+.++..|...
T Consensus 300 ~~r~I~~~~~--~~~~~---~----~~L~~-ll~~--l~~~~IVFv~t~~~~~~a~~l~~~L~~~--------------- 352 (1171)
T TIGR01054 300 TLRNVVDVYV--EDEDL---K----ETLLE-IVKK--LGTGGIVYVSIDYGKEKAEEIAEFLENH--------------- 352 (1171)
T ss_pred cccceEEEEE--ecccH---H----HHHHH-HHHH--cCCCEEEEEeccccHHHHHHHHHHHHhC---------------
Confidence 00 1111111 11110 0 11122 2222 256899999999 8888888776421
Q ss_pred hhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEe----CcccccccCCcc---eeeccccc
Q 000849 723 AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVM----SSSMCWEVPLTA---HLATGRKM 795 (1254)
Q Consensus 723 ~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVa----T~~l~~Gvdip~---~~V~~~~~ 795 (1254)
++.+..+||++++ .+++.|++|+++|||| |++++||+|+|. ++|+++.|
T Consensus 353 --------------------g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 353 --------------------GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred --------------------CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 4568899999973 6899999999999999 589999999993 55565554
No 110
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=6.8e-22 Score=234.70 Aligned_cols=296 Identities=18% Similarity=0.144 Sum_probs=183.6
Q ss_pred cCCChHHHHHHhhCCc----ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcc
Q 000849 451 FARLPAKQRITAALPN----IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK 526 (1254)
Q Consensus 451 f~~~~~Q~~~~~~i~~----~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~ 526 (1254)
|++.++|+++++++.. ....++++|||+|||.++...+-. + .. +++|++|+++|+.|..+.+.+.+..
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~-----~~--~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L-----KR--STLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h-----cC--CEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3444444444444433 445666699999999998766542 2 22 5999999999999998887775542
Q ss_pred ccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHh
Q 000849 527 ELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIAS 606 (1254)
Q Consensus 527 ~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~ 606 (1254)
+..++.+.|+..... ...|.|+|...+.... .........+++||+||||++..+. +..+...+
T Consensus 107 --~~~~g~~~~~~~~~~----~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~----- 170 (442)
T COG1061 107 --NDEIGIYGGGEKELE----PAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELL----- 170 (442)
T ss_pred --ccccceecCceeccC----CCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhh-----
Confidence 234566666543321 1579999988773211 1111223379999999999988432 22222222
Q ss_pred hcCCCcE-EEEecCCCCCh-----HHHHHhhcCCCCeeEecCCC-----CcccccEEEEeeccCCC--------hH----
Q 000849 607 QVENKIR-IVALSTSLANA-----KDLGEWIGASSHGVFNFPPG-----VRPVPLEIQIQGVDITN--------FE---- 663 (1254)
Q Consensus 607 ~~~~~~r-ii~lSATl~~~-----~~l~~~l~~~~~~~~~~~~~-----~r~v~l~~~~~~~~~~~--------~~---- 663 (1254)
.... ++|||||++.. .++...+| ..++.+... ..-.|............ ..
T Consensus 171 ---~~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 171 ---SAAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred ---hcccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 1233 89999998733 23444444 122222110 01111121111110000 00
Q ss_pred ---------------HHHHhhCHHHHHHHHhhhh---cCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhc
Q 000849 664 ---------------ARMKAMTKPTYTAIMQHAK---NEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKE 725 (1254)
Q Consensus 664 ---------------~~~~~~~~~~~~~i~~~~~---~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~ 725 (1254)
.............+...+. .+.+++||+.+...+..++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~------------------- 305 (442)
T COG1061 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA------------------- 305 (442)
T ss_pred hhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC-------------------
Confidence 0001111111222222222 578999999999999999876621
Q ss_pred hhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-cccccCCHHHHHH
Q 000849 726 VEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQ 803 (1254)
Q Consensus 726 l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Q 803 (1254)
+.++..+.+..+..+|..+++.|+.|.+++||++.++..|+|+| +.++ ..+..-|...|.|
T Consensus 306 -----------------~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q 368 (442)
T COG1061 306 -----------------PGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQ 368 (442)
T ss_pred -----------------CCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHH
Confidence 11256789999999999999999999999999999999999999 5555 4444579999999
Q ss_pred hhcccCCCC
Q 000849 804 MMGHAGRPL 812 (1254)
Q Consensus 804 r~GRaGR~g 812 (1254)
|+||.-|+.
T Consensus 369 ~lGR~LR~~ 377 (442)
T COG1061 369 RLGRGLRPA 377 (442)
T ss_pred HhhhhccCC
Confidence 999999953
No 111
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.87 E-value=2.2e-22 Score=216.46 Aligned_cols=286 Identities=14% Similarity=0.142 Sum_probs=183.6
Q ss_pred cEEEEEcchHHHHHHHHHHHHHhhccc---cCcEEEEeccccccc--h-hhcccCcEEEEcHhhHHHHHHhhhcccccce
Q 000849 501 MRAVYIAPIEALAKQRYCDWERKFGKE---LGMCVVELTVETAMD--L-KLLEKGQIIISTPEKWDALSRRWKQRKYVQQ 574 (1254)
Q Consensus 501 ~~vl~i~P~r~La~q~~~~~~~~~~~~---~~~~v~~~~g~~~~~--~-~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~ 574 (1254)
|.++++-|.|+|+.|.++.+++ |... ..++...+.|+.... . ...+..+|+|+||++++.++... ...+..
T Consensus 287 p~avivepsrelaEqt~N~i~~-Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g--~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEE-FKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG--LVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHH-HHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc--ceeeee
Confidence 7899999999999999996664 3322 123333444543322 1 23345699999999998887663 345888
Q ss_pred eeEEEecccccccCC-CccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh--HHHH-------HhhcCCCC-----eeE
Q 000849 575 VSLFIIDELHLIGGQ-GGPVLEVIVARMRYIASQVENKIRIVALSTSLANA--KDLG-------EWIGASSH-----GVF 639 (1254)
Q Consensus 575 v~liIiDEaH~l~~~-~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~--~~l~-------~~l~~~~~-----~~~ 639 (1254)
+.++|+||++.+... ...-+..+...+..+.+. +...+.+..|||+.-. ..++ .|...... .+.
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd-g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD-GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVH 442 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcC-CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhc
Confidence 999999999998842 222233333344444322 3568889999998632 2222 33332211 000
Q ss_pred ecC----CC----Cccc--cc-------EEEEe-eccCCChHHHHHhhC--HHHHHHHHhhhhcCCCeEEEecChhhHHH
Q 000849 640 NFP----PG----VRPV--PL-------EIQIQ-GVDITNFEARMKAMT--KPTYTAIMQHAKNEKPALVFVPSRKYARL 699 (1254)
Q Consensus 640 ~~~----~~----~r~v--~l-------~~~~~-~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~lVF~~s~~~~~~ 699 (1254)
.+. ++ +-.. ++ ..... +...+........+. +....++.+ ....++|+||.|+..|..
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~--h~mdkaiifcrtk~dcDn 520 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR--HAMDKAIIFCRTKQDCDN 520 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh--hccCceEEEEeccccchH
Confidence 000 00 0000 00 00000 000111111111111 122233333 356789999999999999
Q ss_pred HHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCccc
Q 000849 700 TAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSM 779 (1254)
Q Consensus 700 la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l 779 (1254)
+-+.+...... .+.+..+|++..+.+|+.-++.|+++..+.||||+++
T Consensus 521 Ler~~~qkgg~--------------------------------~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdva 568 (725)
T KOG0349|consen 521 LERMMNQKGGK--------------------------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVA 568 (725)
T ss_pred HHHHHHHcCCc--------------------------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhh
Confidence 98877654321 3568889999999999999999999999999999999
Q ss_pred ccccCCc--ceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCC
Q 000849 780 CWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAP 826 (1254)
Q Consensus 780 ~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~ 826 (1254)
++|+|+. ..+++-..|-...+|+||+||+||+.. .|.++.++...
T Consensus 569 argldi~g~p~~invtlpd~k~nyvhrigrvgraer--mglaislvat~ 615 (725)
T KOG0349|consen 569 ARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER--MGLAISLVATV 615 (725)
T ss_pred hccccccCCceEEEEecCcccchhhhhhhccchhhh--cceeEEEeecc
Confidence 9999999 677777788899999999999999876 88888765543
No 112
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=99.86 E-value=1.7e-21 Score=224.22 Aligned_cols=184 Identities=36% Similarity=0.621 Sum_probs=145.6
Q ss_pred ccHHHHHHHhccCCccC-CCCCCChhHHHHHHHHHHHccccccCccccccC-----cHHHHHHHHHHHHHhcCcHHHHHH
Q 000849 193 KIKMELAKLLDRVPIPV-KESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQLAEK 266 (1254)
Q Consensus 193 ~e~~~l~~l~~~~~~~~-~~~~~~~~~Kv~~Llq~~is~~~~~~~~l~~D~-----~a~ri~~a~~ei~~~~~~~~~a~~ 266 (1254)
+|+.+|.+|...+|+|+ ++.+.+++.|+++|||||++|++++.+++..|+ ++.||++|++|+|..+||+..+.+
T Consensus 52 ~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~ 131 (314)
T PF02889_consen 52 NEKKELNELNKKIPYPIKKEKINDPHIKAFVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALN 131 (314)
T ss_dssp THHHHHHHHHCCSSS--STS-TTSHHHHHHHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHH
T ss_pred hhHHHHHHHHHhcccCccccccccHHHHHHHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 67889999999999888 788899999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccccCCCCHHHHHHHHhcCCC----------------CC-----------------------
Q 000849 267 ALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF----------------LG----------------------- 307 (1254)
Q Consensus 267 ~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~----------------~g----------------------- 307 (1254)
+++|++||.+|+|+..+||+||||++++.+++|.++|+. ++
T Consensus 132 ~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~ 211 (314)
T PF02889_consen 132 ALELSQCIVQALWDSDSPLLQLPHIGEESLKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKA 211 (314)
T ss_dssp HHHHHHHHHHTS-TTS-GGGGSTT--HHHHHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEE
T ss_pred HHHHHHHHHhhcCCCCChhhcCCCCCHHHHHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEE
Confidence 999999999999998999999999999999999999954 11
Q ss_pred --CCCcccc---ceEEEEEeeeeeecccccCc-ceEEEEEEEeCCCCeEEEEEeeeeccccCCcceEEEEEeeCC
Q 000849 308 --KPITRTV---LRVELTITPDFQWDDKVHGY-VELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIY 376 (1254)
Q Consensus 308 --~pi~~~~---~~~~~~~~~~~~w~~~~~g~-~~~f~~~ved~~~~~il~~~~~~l~~~~~~~~~~~~~~~p~~ 376 (1254)
+|++... +.++|.+++.|.|+.++||. .+.||++|+|.++++++|.+.+.+.++.......++|.+|..
T Consensus 212 ~~~~~~~~~~~~~~v~v~i~~~~~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~ 286 (314)
T PF02889_consen 212 SVQVIDEEIVPILTVQVSITRKFSWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIP 286 (314)
T ss_dssp EETTCCGEECSEEEEEEEEEESSS-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS
T ss_pred EEeccccccCCcEEEEEEEEcccccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCC
Confidence 0888888 99999999999999999999 899999999999999999999999322234567788888875
No 113
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=6.1e-20 Score=236.05 Aligned_cols=337 Identities=15% Similarity=0.122 Sum_probs=193.1
Q ss_pred cCCChHHHHHHhhCC-----cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhc
Q 000849 451 FARLPAKQRITAALP-----NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFG 525 (1254)
Q Consensus 451 f~~~~~Q~~~~~~i~-----~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~ 525 (1254)
+.+.++|.++++++. .....++++|||||||.++...+.+.+.. ...+ +||+++|+++|+.|..+.|+.. +
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~--rVLfLvDR~~L~~Qa~~~F~~~-~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFR--RILFLVDRSALGEQAEDAFKDT-K 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccC--eEEEEecHHHHHHHHHHHHHhc-c
Confidence 356777877776663 23456777999999999876555444433 3344 9999999999999999998863 2
Q ss_pred cccCcEEEEeccccc-cchhhcccCcEEEEcHhhHHHHHHhhh---cccccceeeEEEecccccccC-CC--------cc
Q 000849 526 KELGMCVVELTVETA-MDLKLLEKGQIIISTPEKWDALSRRWK---QRKYVQQVSLFIIDELHLIGG-QG--------GP 592 (1254)
Q Consensus 526 ~~~~~~v~~~~g~~~-~~~~~~~~~~Iiv~Tpe~l~~l~~~~~---~~~~l~~v~liIiDEaH~l~~-~~--------g~ 592 (1254)
...+..+....+-.. .+...-...+|+|+|..++........ ....+..+++||+||||+-.. +. ..
T Consensus 488 ~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 111111111111000 001111346999999998843321111 113467889999999998531 00 01
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCC----C----Cc-ccccEEEEe--ecc--C
Q 000849 593 VLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPP----G----VR-PVPLEIQIQ--GVD--I 659 (1254)
Q Consensus 593 ~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~----~----~r-~v~l~~~~~--~~~--~ 659 (1254)
......+..+.+.... +...||||||+. .....++|... ..+.+.. . +. |..+...+. +.. .
T Consensus 568 ~~~~~~~~yr~iL~yF--dA~~IGLTATP~--r~t~~~FG~pv-~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF--DAVKIGLTATPA--LHTTEIFGEPV-YTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred hhhhHHHHHHHHHhhc--CccEEEEecCCc--cchhHHhCCee-EEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 1111234444444432 357899999975 23445566321 1111100 0 00 111111000 000 0
Q ss_pred C----------------ChHHH----HHhhC---------HHHHHHHHhhhh--cCCCeEEEecChhhHHHHHHHHHHHh
Q 000849 660 T----------------NFEAR----MKAMT---------KPTYTAIMQHAK--NEKPALVFVPSRKYARLTAVDLMIYS 708 (1254)
Q Consensus 660 ~----------------~~~~~----~~~~~---------~~~~~~i~~~~~--~~~~~lVF~~s~~~~~~la~~L~~~~ 708 (1254)
. ..... ...+. +.+...+.+++. ..+++||||.++..|+.++..|....
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 0 00000 00011 111222333322 34799999999999999988876543
Q ss_pred hccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCc-eEEEeCcccccccCCc-
Q 000849 709 CKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKI-KVCVMSSSMCWEVPLT- 786 (1254)
Q Consensus 709 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~-~VLVaT~~l~~Gvdip- 786 (1254)
....... -...+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|
T Consensus 723 ~~~~~~~--------------------------~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 723 KKKYGQV--------------------------EDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred HhhcCCc--------------------------CccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 2110000 0113456788875 56789999999987 6999999999999999
Q ss_pred -ceeecccccCCHHHHHHhhcccCCCCCC-CCceEEEEcc
Q 000849 787 -AHLATGRKMLILTTLLQMMGHAGRPLLD-NSEKCVILCH 824 (1254)
Q Consensus 787 -~~~V~~~~~~s~~~~~Qr~GRaGR~g~d-~~G~~iil~~ 824 (1254)
..+|..+.+.|...|+||+||+.|...+ ++-.++|+--
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 4556777789999999999999997532 2455565543
No 114
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=1.9e-19 Score=226.18 Aligned_cols=338 Identities=14% Similarity=0.147 Sum_probs=201.4
Q ss_pred ccCCChHHHHHHhhCCc--ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 450 MFARLPAKQRITAALPN--IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 450 ~f~~~~~Q~~~~~~i~~--~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
-..+.|+|.+++..+.. ...+++.-.+|.|||..+.+.+-..+.. +..+ +++||+|. .|..|...++.++|+
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~--rvLIVvP~-sL~~QW~~El~~kF~-- 223 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAE--RVLILVPE-TLQHQWLVEMLRRFN-- 223 (956)
T ss_pred CCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCC--cEEEEcCH-HHHHHHHHHHHHHhC--
Confidence 45688899988877632 2356777999999999987665554444 3445 89999997 899998888877775
Q ss_pred cCcEEEEecccccc-----chhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCC---CccHHHHHHH
Q 000849 528 LGMCVVELTVETAM-----DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ---GGPVLEVIVA 599 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~-----~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~---~g~~~e~~~~ 599 (1254)
+....+.++... ....+...+++|+|.+.+..-- .+.....-..++++||||||++... ....+.
T Consensus 224 --l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~-~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~---- 296 (956)
T PRK04914 224 --LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNK-QRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ---- 296 (956)
T ss_pred --CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCH-HHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH----
Confidence 333334333211 1122335689999988763210 0111112247899999999999731 112222
Q ss_pred HHHHHHhhcCCCcEEEEecCCCCC--hHHHH---------------Hhh-----------------cCCC-C--------
Q 000849 600 RMRYIASQVENKIRIVALSTSLAN--AKDLG---------------EWI-----------------GASS-H-------- 636 (1254)
Q Consensus 600 ~l~~~~~~~~~~~rii~lSATl~~--~~~l~---------------~~l-----------------~~~~-~-------- 636 (1254)
.+..+.. ....+++||||+-. .+++- .|. ...+ .
T Consensus 297 ~v~~La~---~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~ 373 (956)
T PRK04914 297 VVEQLAE---VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALG 373 (956)
T ss_pred HHHHHhh---ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 2222321 23467899999752 12111 111 0000 0
Q ss_pred ee---------------------------------------EecCCCC---cccc-cEEEEeeccCCC-hHHHH------
Q 000849 637 GV---------------------------------------FNFPPGV---RPVP-LEIQIQGVDITN-FEARM------ 666 (1254)
Q Consensus 637 ~~---------------------------------------~~~~~~~---r~v~-l~~~~~~~~~~~-~~~~~------ 666 (1254)
.+ +-|.... ...| -..+........ +....
T Consensus 374 ~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~ 453 (956)
T PRK04914 374 ELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEA 453 (956)
T ss_pred HHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHH
Confidence 00 0000000 0000 000010111100 00000
Q ss_pred ------------Hhh--------CHHHHHHHHhhh--hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChh
Q 000849 667 ------------KAM--------TKPTYTAIMQHA--KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAK 724 (1254)
Q Consensus 667 ------------~~~--------~~~~~~~i~~~~--~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~ 724 (1254)
..+ ..+..+.+.+.+ ..+.++||||+++..+..++..|...
T Consensus 454 ~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~----------------- 516 (956)
T PRK04914 454 RARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER----------------- 516 (956)
T ss_pred HHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc-----------------
Confidence 000 001112222222 23679999999999999988766321
Q ss_pred chhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcC--CceEEEeCcccccccCCc--ceeecccccCCHHH
Q 000849 725 EVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAG--KIKVCVMSSSMCWEVPLT--AHLATGRKMLILTT 800 (1254)
Q Consensus 725 ~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g--~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~ 800 (1254)
.++.+..+||+|++.+|..+.+.|+++ ..+|||||+++++|+|++ .++|+++.|.++..
T Consensus 517 -----------------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~ 579 (956)
T PRK04914 517 -----------------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDL 579 (956)
T ss_pred -----------------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHH
Confidence 255688899999999999999999984 699999999999999999 57789999999999
Q ss_pred HHHhhcccCCCCCCCCceEEEEccCCc-HHHHHHhhcC
Q 000849 801 LLQMMGHAGRPLLDNSEKCVILCHAPH-KEYYKKFLYE 837 (1254)
Q Consensus 801 ~~Qr~GRaGR~g~d~~G~~iil~~~~~-~~~~~~~l~~ 837 (1254)
|.||+||+||.|+.....+++++..+. .+.+.+++.+
T Consensus 580 ~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 580 LEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 999999999999854444444444332 3344444444
No 115
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1e-20 Score=228.70 Aligned_cols=359 Identities=18% Similarity=0.201 Sum_probs=233.1
Q ss_pred CCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCC
Q 000849 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETG 499 (1254)
Q Consensus 420 ~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~ 499 (1254)
..+|+-|..++..+.... ......++.|.||||||.+|+-++-+.+.+ ++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~---------------------------~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---Gk 246 (730)
T COG1198 197 LALNQEQQAAVEAILSSL---------------------------GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GK 246 (730)
T ss_pred cccCHHHHHHHHHHHHhc---------------------------ccccceeEeCCCCCcHHHHHHHHHHHHHHc---CC
Confidence 367888999998886541 011223344999999999999999888887 55
Q ss_pred CcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-------hcccCcEEEEcHhhHHHHHHhhhccccc
Q 000849 500 VMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-------LLEKGQIIISTPEKWDALSRRWKQRKYV 572 (1254)
Q Consensus 500 ~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l 572 (1254)
.+|+++|-.+|..|+.++|+.+|+ .++..++++.+...+ ...+++|+|+| +..-...+
T Consensus 247 --qvLvLVPEI~Ltpq~~~rf~~rFg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf 311 (730)
T COG1198 247 --QVLVLVPEIALTPQLLARFKARFG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPF 311 (730)
T ss_pred --EEEEEeccccchHHHHHHHHHHhC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCch
Confidence 999999999999999999999886 568888887665432 12356999999 33334568
Q ss_pred ceeeEEEecccccccC--CCccHH---HHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHHHhhcCCCC--eeEecCCCC
Q 000849 573 QQVSLFIIDELHLIGG--QGGPVL---EVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSH--GVFNFPPGV 645 (1254)
Q Consensus 573 ~~v~liIiDEaH~l~~--~~g~~~---e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~~~l~~~~~--~~~~~~~~~ 645 (1254)
.++++|||||-|.-.. +.++.| +..+-|-+ ..++++|+-|||++ +..|...... ..+.+....
T Consensus 312 ~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~------~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~ 381 (730)
T COG1198 312 KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK------KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRA 381 (730)
T ss_pred hhccEEEEeccccccccCCcCCCcCHHHHHHHHHH------HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccc
Confidence 9999999999996654 333333 22222221 35789999999974 4444444322 222232222
Q ss_pred -cccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHH------------------
Q 000849 646 -RPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMI------------------ 706 (1254)
Q Consensus 646 -r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~------------------ 706 (1254)
+..+..+.+........... ..+...+++.+.+.+..+.++|+|+|.|..+-.+...=+.
T Consensus 382 ~~a~~p~v~iiDmr~e~~~~~-~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~ 460 (730)
T COG1198 382 GRARLPRVEIIDMRKEPLETG-RSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKAT 460 (730)
T ss_pred cccCCCcceEEeccccccccC-ccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCC
Confidence 22233444433322211110 0166788899999989999999999999877544322111
Q ss_pred ------HhhccCcccccccccChhchhhHHhhcC--hHHHHHHh-hccceeecCCCCHHH--HHHHHHHHhcCCceEEEe
Q 000849 707 ------YSCKDSDQKSAFLLCSAKEVEPHVSIIQ--EEMLRATL-RLGVGYLHEGLNKSD--QEVVSTLFEAGKIKVCVM 775 (1254)
Q Consensus 707 ------~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~L~~~l-~~~v~~~h~~l~~~~--R~~v~~~F~~g~~~VLVa 775 (1254)
+|......+..+..|.+..+.....+.+ .++|...+ +..+..+.++..... -+..++.|.+|+.+|||.
T Consensus 461 ~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiG 540 (730)
T COG1198 461 GQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIG 540 (730)
T ss_pred CeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeec
Confidence 1111111111122222222221111111 35666666 678888888765533 467789999999999999
Q ss_pred CcccccccCCc-ceee---ccccc----------CCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhc
Q 000849 776 SSSMCWEVPLT-AHLA---TGRKM----------LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLY 836 (1254)
Q Consensus 776 T~~l~~Gvdip-~~~V---~~~~~----------~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~ 836 (1254)
|+.++.|.|+| ..+| +.+.- .....+.|-.|||||.+. .|.+++.+..++...++..+.
T Consensus 541 TQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~--~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 541 TQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK--PGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred chhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC--CCeEEEEeCCCCcHHHHHHHh
Confidence 99999999999 4444 22211 456778999999999865 899999999888666655433
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.84 E-value=3.4e-20 Score=233.21 Aligned_cols=312 Identities=20% Similarity=0.182 Sum_probs=196.0
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh----
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---- 544 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---- 544 (1254)
.+++.||||+|||.+++.+++...... .....+++++.|++++++++++++++.++.. +......+|.......
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~-~~~~~~~h~~~~~~~~~~~~ 293 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF-SVIGKSLHSSSKEPLLLEPD 293 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc-ccccccccccccchhhhccc
Confidence 677889999999999999888776662 1123499999999999999999999866643 2222212333221100
Q ss_pred -------------hcccCcEEEEcHhhHHHH-HHhhhcc-cccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcC
Q 000849 545 -------------LLEKGQIIISTPEKWDAL-SRRWKQR-KYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVE 609 (1254)
Q Consensus 545 -------------~~~~~~Iiv~Tpe~l~~l-~~~~~~~-~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~ 609 (1254)
...-..+.++||-..... ....... ...-..+++|+||+|.+.++. ....+.+.+..+. .
T Consensus 294 ~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~--~~~~l~~~i~~l~---~ 368 (733)
T COG1203 294 QDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET--MLAALLALLEALA---E 368 (733)
T ss_pred cccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc--hHHHHHHHHHHHH---h
Confidence 001124555665554321 1111101 001234799999999999763 3333444343332 3
Q ss_pred CCcEEEEecCCCCCh--HHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCe
Q 000849 610 NKIRIVALSTSLANA--KDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPA 687 (1254)
Q Consensus 610 ~~~rii~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 687 (1254)
.+.++|+||||+|.. +.+...++......... ...+..-+..+............. ......+...+..++++
T Consensus 369 ~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~kv 443 (733)
T COG1203 369 AGVPVLLMSATLPPFLKEKLKKALGKGREVVENA--KFCPKEDEPGLKRKERVDVEDGPQ---EELIELISEEVKEGKKV 443 (733)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhcccceeccc--cccccccccccccccchhhhhhhh---HhhhhcchhhhccCCcE
Confidence 478999999999865 44444444432111110 000000000000000000000000 11222333444889999
Q ss_pred EEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHh-
Q 000849 688 LVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFE- 766 (1254)
Q Consensus 688 lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~- 766 (1254)
+|.|||.+.|.+++..|..... .+..+||.+...+|...++.++
T Consensus 444 lvI~NTV~~Aie~Y~~Lk~~~~-----------------------------------~v~LlHSRf~~~dR~~ke~~l~~ 488 (733)
T COG1203 444 LVIVNTVDRAIELYEKLKEKGP-----------------------------------KVLLLHSRFTLKDREEKERELKK 488 (733)
T ss_pred EEEEecHHHHHHHHHHHHhcCC-----------------------------------CEEEEecccchhhHHHHHHHHHH
Confidence 9999999999999988754311 4788999999999999888654
Q ss_pred ---cCCceEEEeCcccccccCCcceeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcH
Q 000849 767 ---AGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHK 828 (1254)
Q Consensus 767 ---~g~~~VLVaT~~l~~Gvdip~~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~ 828 (1254)
.+...|+|||++.+.|||+..+++ .+.+.++.+++||+||++|.|.+..|.++++...+..
T Consensus 489 ~~~~~~~~IvVaTQVIEagvDidfd~m-ITe~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 489 LFKQNEGFIVVATQVIEAGVDIDFDVL-ITELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred HHhccCCeEEEEeeEEEEEeccccCee-eecCCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 578899999999999999996555 3456799999999999999997668888888776543
No 117
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.7e-19 Score=218.00 Aligned_cols=115 Identities=20% Similarity=0.126 Sum_probs=90.0
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-h
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-L 545 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-~ 545 (1254)
+.--|++++||+|||++|.+|++..... +. .+.+++|++.||.|.++.+...+.. +|++++.++|+.+...+ .
T Consensus 95 h~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~--~V~VvTpn~yLA~qd~e~m~~l~~~-lGLtv~~i~gg~~~~~r~~ 168 (896)
T PRK13104 95 HEGNIAEMRTGEGKTLVATLPAYLNAIS---GR--GVHIVTVNDYLAKRDSQWMKPIYEF-LGLTVGVIYPDMSHKEKQE 168 (896)
T ss_pred ccCccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEcCCHHHHHHHHHHHHHHhcc-cCceEEEEeCCCCHHHHHH
Confidence 4445778999999999999999976655 33 6999999999999999998875554 59999999998765533 2
Q ss_pred cccCcEEEEcHhhH-HHHHHhhhcc----cccceeeEEEeccccccc
Q 000849 546 LEKGQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 546 ~~~~~Iiv~Tpe~l-~~l~~~~~~~----~~l~~v~liIiDEaH~l~ 587 (1254)
.-.++|+|+||++| .++++..... .....+.++||||||.++
T Consensus 169 ~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 169 AYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred HhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 33679999999998 6666653111 123689999999999775
No 118
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=8.8e-19 Score=212.84 Aligned_cols=329 Identities=15% Similarity=0.084 Sum_probs=203.3
Q ss_pred hhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcc
Q 000849 447 RKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK 526 (1254)
Q Consensus 447 ~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~ 526 (1254)
+.+...+.+.|-=..-.+.+ --|....||+|||+++.+|++..... +. .|-+++|+.-||.+-++.+.+.+..
T Consensus 75 R~~g~~~~dvQlig~l~l~~--G~iaEm~TGEGKTLvA~l~a~l~al~---G~--~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 75 RVLGLRPFDVQIIGGIVLHE--GNIAEMKTGEGKTLTATLPVYLNALT---GK--GVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred HHhCCCCchhHHHHHHHHhc--CCcccccCCCCCcHHHHHHHHHHHHc---CC--CeEEEeccHHHHHhhHHHHHHHHHh
Confidence 44555555555544444433 34788999999999999999877776 44 7999999999999999999987776
Q ss_pred ccCcEEEEeccccccch-hhcccCcEEEEcHhhH-HHHHHhh----hcccccceeeEEEecccccccC-C-C------c-
Q 000849 527 ELGMCVVELTVETAMDL-KLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIGG-Q-G------G- 591 (1254)
Q Consensus 527 ~~~~~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l-~~l~~~~----~~~~~l~~v~liIiDEaH~l~~-~-~------g- 591 (1254)
. |++|+.++|+.+... +..-.+||+++|...| -+.+|.. ........+.+.||||+|.++= + + |
T Consensus 148 L-Gl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 148 L-GLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred c-CCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 4 999999999876543 3445779999999887 2333331 1122345678999999996541 1 1 1
Q ss_pred -----cHHHHHHHHHHHHHhhc---------------CCCcEEEEecC----------CCCC---hH--HHHHhhc----
Q 000849 592 -----PVLEVIVARMRYIASQV---------------ENKIRIVALST----------SLAN---AK--DLGEWIG---- 632 (1254)
Q Consensus 592 -----~~~e~~~~~l~~~~~~~---------------~~~~rii~lSA----------Tl~~---~~--~l~~~l~---- 632 (1254)
..+..+....+.+.... ....+.+.++. .+++ .+ .+..|+.
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 11211111111111100 00111222221 0111 11 1122221
Q ss_pred ------CCCCe------eEec-----------------------------------------------------------
Q 000849 633 ------ASSHG------VFNF----------------------------------------------------------- 641 (1254)
Q Consensus 633 ------~~~~~------~~~~----------------------------------------------------------- 641 (1254)
.+... +.-+
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 00000 0000
Q ss_pred ----------------CCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHH
Q 000849 642 ----------------PPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705 (1254)
Q Consensus 642 ----------------~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~ 705 (1254)
-|..+|... ...+..-+... ......+.+.+.+....+.|+||||+|+..++.++..|.
T Consensus 387 ~e~~Ef~~iY~l~vv~IPtnkp~~r----~d~~d~i~~t~-~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 387 TEEEEFREIYNMEVITIPTNRPVIR----KDSPDLLYPTL-DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCeee----eeCCCeEEcCH-HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 000111000 00000000000 001112333333333678999999999999999998775
Q ss_pred HHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCC
Q 000849 706 IYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPL 785 (1254)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdi 785 (1254)
+. +.....+||++...++..+.+.++.|. |+|||++++||.||
T Consensus 462 ~~-----------------------------------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI 504 (796)
T PRK12906 462 EA-----------------------------------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDI 504 (796)
T ss_pred HC-----------------------------------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCC
Confidence 42 345678999999999999999888886 99999999999999
Q ss_pred c-----c-----eeecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 786 T-----A-----HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 786 p-----~-----~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
+ . +|+....|.|...+.|++|||||.|. +|.+..+++-++
T Consensus 505 ~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~--~G~s~~~~sleD 554 (796)
T PRK12906 505 KLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD--PGSSRFYLSLED 554 (796)
T ss_pred CCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC--CcceEEEEeccc
Confidence 6 2 66677788999999999999999996 899988887664
No 119
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=3.9e-18 Score=208.07 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=87.0
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-hccc
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-LLEK 548 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-~~~~ 548 (1254)
-|++++||+|||+++.+|++-.... +. .+-+++|+..||.|.++.+...+.. +|++++.++|+.+...+ ..-.
T Consensus 97 ~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~IvTpn~yLA~rd~e~~~~l~~~-LGlsv~~i~~~~~~~er~~~y~ 170 (830)
T PRK12904 97 KIAEMKTGEGKTLVATLPAYLNALT---GK--GVHVVTVNDYLAKRDAEWMGPLYEF-LGLSVGVILSGMSPEERREAYA 170 (830)
T ss_pred chhhhhcCCCcHHHHHHHHHHHHHc---CC--CEEEEecCHHHHHHHHHHHHHHHhh-cCCeEEEEcCCCCHHHHHHhcC
Confidence 4666999999999999999633333 33 5779999999999999999886655 59999999998775533 2335
Q ss_pred CcEEEEcHhhH-HHHHHhhhc----ccccceeeEEEeccccccc
Q 000849 549 GQIIISTPEKW-DALSRRWKQ----RKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 549 ~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~v~liIiDEaH~l~ 587 (1254)
++|+++||+.| .++++.... ......+.++||||||.++
T Consensus 171 ~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 171 ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 79999999999 666665331 1246788999999999765
No 120
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.80 E-value=3e-19 Score=186.14 Aligned_cols=157 Identities=30% Similarity=0.414 Sum_probs=116.3
Q ss_pred hHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEE
Q 000849 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534 (1254)
Q Consensus 455 ~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~ 534 (1254)
+.|+++++.+.++..+++.||||+|||+++.++++..+... ..+ +++|++|+++|+.|+++++.+.+.. .+.++..
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~--~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDA--RVLIIVPTRALAEQQFERLRKFFSN-TNVRVVL 77 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSS--EEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCc--eEEEEeecccccccccccccccccc-ccccccc
Confidence 34444444444444455669999999999999999988873 444 9999999999999999999987765 4778888
Q ss_pred eccccccc---hhhc-ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcC
Q 000849 535 LTVETAMD---LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVE 609 (1254)
Q Consensus 535 ~~g~~~~~---~~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~ 609 (1254)
++|+.... ...+ .+++|+|+||++|..+.+.... .+.+++++|+||+|.+.+ .++..+..++.+++. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~-----~ 150 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR-----F 150 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT-----T
T ss_pred ccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhcC-----C
Confidence 88877633 1223 4689999999999888776332 455699999999999986 344444444443321 2
Q ss_pred CCcEEEEecCCCC
Q 000849 610 NKIRIVALSTSLA 622 (1254)
Q Consensus 610 ~~~rii~lSATl~ 622 (1254)
.+.+++++|||++
T Consensus 151 ~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 151 KNIQIILLSATLP 163 (169)
T ss_dssp TTSEEEEEESSST
T ss_pred CCCcEEEEeeCCC
Confidence 3689999999997
No 121
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.78 E-value=3.2e-18 Score=184.11 Aligned_cols=165 Identities=22% Similarity=0.238 Sum_probs=126.1
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
++.|+++|.++++.++++ .|++++ ||||+|||+++.++++..+......
T Consensus 19 ~~~~~~~Q~~~~~~~~~~-~~~li~------------------------------~~TG~GKT~~~~~~~l~~~~~~~~~ 67 (203)
T cd00268 19 FEKPTPIQARAIPPLLSG-RDVIGQ------------------------------AQTGSGKTAAFLIPILEKLDPSPKK 67 (203)
T ss_pred CCCCCHHHHHHHHHHhcC-CcEEEE------------------------------CCCCCcHHHHHHHHHHHHHHhhccc
Confidence 778888999988888874 446666 9999999999999999988874212
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch--hhcc-cCcEEEEcHhhHHHHHHhhhccccccee
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL--KLLE-KGQIIISTPEKWDALSRRWKQRKYVQQV 575 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~-~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v 575 (1254)
++++++|++|+++|+.|+.+.+.+.... .++++..++|+..... .... +++|+|+||+++..++.+.. ..+.++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l 144 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKV 144 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhC
Confidence 3459999999999999999999874443 4788888888776432 2233 67999999999977776533 457899
Q ss_pred eEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh
Q 000849 576 SLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624 (1254)
Q Consensus 576 ~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~ 624 (1254)
+++|+||+|.+.+ ..+..+..++. ..+.+.+++++|||+++.
T Consensus 145 ~~lIvDE~h~~~~~~~~~~~~~~~~-------~l~~~~~~~~~SAT~~~~ 187 (203)
T cd00268 145 KYLVLDEADRMLDMGFEDQIREILK-------LLPKDRQTLLFSATMPKE 187 (203)
T ss_pred CEEEEeChHHhhccChHHHHHHHHH-------hCCcccEEEEEeccCCHH
Confidence 9999999999875 23333333333 235689999999999843
No 122
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.8e-17 Score=201.43 Aligned_cols=122 Identities=18% Similarity=0.083 Sum_probs=93.0
Q ss_pred HhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccc
Q 000849 461 TAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA 540 (1254)
Q Consensus 461 ~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~ 540 (1254)
+-.+.-++--|++++||.|||+++.+|++..... +. .|.+++|+..||.+-++.+...+.- +|++|+.+.++.+
T Consensus 89 iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---g~--~VhIvT~ndyLA~RD~e~m~~l~~~-lGlsv~~i~~~~~ 162 (908)
T PRK13107 89 LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---GK--GVHVITVNDYLARRDAENNRPLFEF-LGLTVGINVAGLG 162 (908)
T ss_pred hcchHhcCCccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEeCCHHHHHHHHHHHHHHHHh-cCCeEEEecCCCC
Confidence 4444344556788999999999999999866655 44 6999999999999999888876655 5999999999877
Q ss_pred cchhhcc-cCcEEEEcHhhH-HHHHHhhhc----ccccceeeEEEecccccccC
Q 000849 541 MDLKLLE-KGQIIISTPEKW-DALSRRWKQ----RKYVQQVSLFIIDELHLIGG 588 (1254)
Q Consensus 541 ~~~~~~~-~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~v~liIiDEaH~l~~ 588 (1254)
...+... .++|+++||+.| .+++|.... ......+.+.||||||.+.-
T Consensus 163 ~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 163 QQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 6544332 679999999998 556665311 11346789999999997763
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.76 E-value=9.3e-17 Score=206.72 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=113.7
Q ss_pred cEEEEecCCCC---ChHHHHHhhcCCCCeeEec-CCCCc-ccccEEEEee-ccCC---ChHHHHHhhCHHHHHHHHhhh-
Q 000849 612 IRIVALSTSLA---NAKDLGEWIGASSHGVFNF-PPGVR-PVPLEIQIQG-VDIT---NFEARMKAMTKPTYTAIMQHA- 681 (1254)
Q Consensus 612 ~rii~lSATl~---~~~~l~~~l~~~~~~~~~~-~~~~r-~v~l~~~~~~-~~~~---~~~~~~~~~~~~~~~~i~~~~- 681 (1254)
..+|++|||+. +.+-+.+.+|........+ ++.+. .-...+.+.. .+.. +..... ..+...+.+.+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~----~~ia~~i~~l~~ 671 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYA----QEIASYIIEITA 671 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHH----HHHHHHHHHHHH
Confidence 45899999997 5577788888764322222 22222 1111222211 1111 111111 11222222222
Q ss_pred hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHH
Q 000849 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVV 761 (1254)
Q Consensus 682 ~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v 761 (1254)
..++++|||++|.+..+.++..|...... .+...+..+.. ..|..+
T Consensus 672 ~~~g~~LVlftS~~~l~~v~~~L~~~~~~---------------------------------~~~~~l~q~~~-~~r~~l 717 (850)
T TIGR01407 672 ITSPKILVLFTSYEMLHMVYDMLNELPEF---------------------------------EGYEVLAQGIN-GSRAKI 717 (850)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHhhhccc---------------------------------cCceEEecCCC-ccHHHH
Confidence 24578999999999999998877432110 12223333433 578899
Q ss_pred HHHHhcCCceEEEeCcccccccCCc-c---eeec-----------------------cccc-------CCHHHHHHhhcc
Q 000849 762 STLFEAGKIKVCVMSSSMCWEVPLT-A---HLAT-----------------------GRKM-------LILTTLLQMMGH 807 (1254)
Q Consensus 762 ~~~F~~g~~~VLVaT~~l~~Gvdip-~---~~V~-----------------------~~~~-------~s~~~~~Qr~GR 807 (1254)
++.|++|+..||+||+.+++|||+| . .+|. |..+ .....+.|.+||
T Consensus 718 l~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GR 797 (850)
T TIGR01407 718 KKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGR 797 (850)
T ss_pred HHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999 2 2221 1111 123567999999
Q ss_pred cCCCCCCCCceEEEEccCCcHHHHHHhhcCCcc
Q 000849 808 AGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFP 840 (1254)
Q Consensus 808 aGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~p 840 (1254)
.-|...| .|.++++-..-....|.+.+-..+|
T Consensus 798 lIRs~~D-~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 798 LIRREND-RGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred ccccCCc-eEEEEEEccccccchHHHHHHHhCC
Confidence 9999854 8888887666555566555555555
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.3e-16 Score=193.98 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=102.6
Q ss_pred cccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcccc
Q 000849 449 LMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528 (1254)
Q Consensus 449 ~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~ 528 (1254)
.||.+++.|.+++-.+..+..++++|+||+|||++|.+|++..+.. +. .+++++|+++||.|.++.+...+ ..+
T Consensus 89 ~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---g~--~v~IVTpTrELA~Qdae~m~~L~-k~l 162 (970)
T PRK12899 89 QQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---GK--PVHLVTVNDYLAQRDCEWVGSVL-RWL 162 (970)
T ss_pred CCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---cC--CeEEEeCCHHHHHHHHHHHHHHH-hhc
Confidence 3455667777777777767778888999999999999999977765 33 48899999999999999888744 456
Q ss_pred CcEEEEeccccccchh-hcccCcEEEEcHhhH-HHHHHhhhccc-----ccceeeEEEeccccccc
Q 000849 529 GMCVVELTVETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQRK-----YVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 529 ~~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~~~~-----~l~~v~liIiDEaH~l~ 587 (1254)
|++++.+.|+.+...+ ..-+++|+|+||+++ .++++...... ....+.++||||||.+.
T Consensus 163 GLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 163 GLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 9999999998776543 223689999999999 77777632111 12456899999999775
No 125
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=6.3e-18 Score=198.95 Aligned_cols=130 Identities=32% Similarity=0.406 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|.|-.++.||.+|..|.++||+||-|||||||+||++|||.+.+++||.. +.++.+-+|.||+|||||.|.|..|.+|
T Consensus 640 lLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVi 717 (1248)
T KOG0947|consen 640 LLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVI 717 (1248)
T ss_pred chHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEE
Confidence 45778899999999999999999999999999999999999999999755 6889999999999999999999999999
Q ss_pred EEecCC--cHHHHHHh-hcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcce
Q 000849 81 IITGHS--ELQYYLSL-MNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYL 137 (1254)
Q Consensus 81 i~~~~~--~~~~~~~~-~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~ 137 (1254)
|+|... ....+.++ ++.+.+++|+|...+...||-.-+ +.-.+.+.++++|.
T Consensus 718 i~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY~MILnLLRv-----e~lrvEdm~krSf~ 772 (1248)
T KOG0947|consen 718 IMCKDSVPSAATLKRLIMGGPTRLESQFRLTYGMILNLLRV-----EALRVEDMMKRSFS 772 (1248)
T ss_pred EEecCCCCCHHHHhhHhcCCCchhhhhhhhHHHHHHHHHHH-----HHHHHHHHHHHHhh
Confidence 999863 55556665 577779999999988877776533 23567888888886
No 126
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.2e-16 Score=177.80 Aligned_cols=329 Identities=9% Similarity=-0.032 Sum_probs=213.5
Q ss_pred HHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc---cCcEE
Q 000849 456 AKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE---LGMCV 532 (1254)
Q Consensus 456 ~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~---~~~~v 532 (1254)
.|.++++...++..+++.-.|.+||++|+.++....+.. .+.. ..+|+.|++++++...+.+.-.+... -+--|
T Consensus 290 ~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-~~~s--~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 290 ISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-CHAT--NSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-Cccc--ceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 455556656555556666999999999999988877666 3444 68999999999877543322111111 11123
Q ss_pred EEeccccccchhhc--ccCcEEEEcHhhH-HHHH-HhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhc
Q 000849 533 VELTVETAMDLKLL--EKGQIIISTPEKW-DALS-RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQV 608 (1254)
Q Consensus 533 ~~~~g~~~~~~~~~--~~~~Iiv~Tpe~l-~~l~-~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~ 608 (1254)
....|++....+.+ .+.+++++.|... ...+ .....+.++-...++++||+|.+....|......+.++..++.-.
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F 446 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGF 446 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHH
Confidence 33344444443332 3569999999886 2222 222223456677899999999998777777766666666655432
Q ss_pred --CCCcEEEEecCCCCCh-HHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCC
Q 000849 609 --ENKIRIVALSTSLANA-KDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEK 685 (1254)
Q Consensus 609 --~~~~rii~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 685 (1254)
..+.+++-.|||+.+. ....+.++.....++..+.+-....+.+.......+.............-..+.+.+..+-
T Consensus 447 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~ 526 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGL 526 (1034)
T ss_pred HhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCC
Confidence 4678999999999866 4445566655444444333221111111111111111111111111222233334447789
Q ss_pred CeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHH
Q 000849 686 PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765 (1254)
Q Consensus 686 ~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F 765 (1254)
++|.||++|+-|+.+-....+.+..+++. +-..|.-+.||.+.++|++|+...
T Consensus 527 R~IAFC~~R~~CEL~~~~~R~I~~ET~~~---------------------------LV~~i~SYRGGY~A~DRRKIE~~~ 579 (1034)
T KOG4150|consen 527 RCIAFCPSRKLCELVLCLTREILAETAPH---------------------------LVEAITSYRGGYIAEDRRKIESDL 579 (1034)
T ss_pred cEEEeccHHHHHHHHHHHHHHHHHHhhHH---------------------------HHHHHHhhcCccchhhHHHHHHHh
Confidence 99999999999998876665544333210 112356688999999999999999
Q ss_pred hcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccCCCCCC
Q 000849 766 EAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPLLD 814 (1254)
Q Consensus 766 ~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~d 814 (1254)
-.|+..-+|||++++-|||+. ..++.-..|+|++++.|..|||||...+
T Consensus 580 F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 580 FGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred hCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 999999999999999999999 5556777899999999999999999864
No 127
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.70 E-value=1.6e-15 Score=179.38 Aligned_cols=292 Identities=16% Similarity=0.127 Sum_probs=170.8
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhccc
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEK 548 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 548 (1254)
-+++++.||+|||..+...|.+.+.. ...+ +||+++-+++|+.|.+..+...+.. +-.+..+.+.... ..
T Consensus 187 raLlvMATGTGKTrTAiaii~rL~r~-~~~K--RVLFLaDR~~Lv~QA~~af~~~~P~--~~~~n~i~~~~~~-----~s 256 (875)
T COG4096 187 RALLVMATGTGKTRTAIAIIDRLIKS-GWVK--RVLFLADRNALVDQAYGAFEDFLPF--GTKMNKIEDKKGD-----TS 256 (875)
T ss_pred eEEEEEecCCCcceeHHHHHHHHHhc-chhh--eeeEEechHHHHHHHHHHHHHhCCC--ccceeeeecccCC-----cc
Confidence 37777999999999986555544444 5556 9999999999999999998875443 3344333332211 15
Q ss_pred CcEEEEcHhhHHHHHHhh---hcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChH
Q 000849 549 GQIIISTPEKWDALSRRW---KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAK 625 (1254)
Q Consensus 549 ~~Iiv~Tpe~l~~l~~~~---~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~ 625 (1254)
++|.++|...+....... ..+.....+++|||||||+-.. ..+..++..+. ...++++||+.+..
T Consensus 257 ~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~I~dYFd---------A~~~gLTATP~~~~ 324 (875)
T COG4096 257 SEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSSILDYFD---------AATQGLTATPKETI 324 (875)
T ss_pred eeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHHHHHHHH---------HHHHhhccCccccc
Confidence 799999999985554432 1122456699999999995432 11222333222 22366699987643
Q ss_pred HH--HHhhcCCCCeeEecC--------CCCcccccE--EEEeeccCCChHHH-------------------------HHh
Q 000849 626 DL--GEWIGASSHGVFNFP--------PGVRPVPLE--IQIQGVDITNFEAR-------------------------MKA 668 (1254)
Q Consensus 626 ~l--~~~l~~~~~~~~~~~--------~~~r~v~l~--~~~~~~~~~~~~~~-------------------------~~~ 668 (1254)
+. -.|++..+...|.+. -.++++.+. ....|........+ ...
T Consensus 325 d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~ 404 (875)
T COG4096 325 DRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPF 404 (875)
T ss_pred ccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccc
Confidence 33 345522221221111 112222221 11112111110000 000
Q ss_pred hCHHHHHHHHhhhhc------CCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHh
Q 000849 669 MTKPTYTAIMQHAKN------EKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATL 742 (1254)
Q Consensus 669 ~~~~~~~~i~~~~~~------~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 742 (1254)
-...+...+.+.+.. -+++||||.+...|+.+...+.+.....+.
T Consensus 405 ~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~----------------------------- 455 (875)
T COG4096 405 RTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNG----------------------------- 455 (875)
T ss_pred hHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccC-----------------------------
Confidence 011122223333333 468999999999999999888765433110
Q ss_pred hccceeecCCCCHHHHHHHHHHHh-cCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccCCCCC
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFE-AGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPLL 813 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~-~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g~ 813 (1254)
.-+..+.+.- ...+..+-+.+. +.--+|.|+.+.+..|||+| +.+|..+...|...|.||+||+-|.-.
T Consensus 456 -~~a~~IT~d~-~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 456 -RYAMKITGDA-EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred -ceEEEEeccc-hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCc
Confidence 1123333332 334444444444 34567888899999999999 677766666899999999999999653
No 128
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=2.3e-15 Score=187.68 Aligned_cols=316 Identities=15% Similarity=0.078 Sum_probs=161.8
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhc-
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLL- 546 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~- 546 (1254)
...++..|||||||+++...+...+.. ... +++|+++|+++|..|..+.|.+..... . ...+....-...+
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~~l~~~-~~~--~~vl~lvdR~~L~~Q~~~~f~~~~~~~--~---~~~~s~~~L~~~l~ 335 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAARKALEL-LKN--PKVFFVVDRRELDYQLMKEFQSLQKDC--A---ERIESIAELKRLLE 335 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHHHHHhh-cCC--CeEEEEECcHHHHHHHHHHHHhhCCCC--C---cccCCHHHHHHHHh
Confidence 456777999999999887766554433 233 499999999999999999998732211 1 0011110001112
Q ss_pred -ccCcEEEEcHhhHHHHHHhhhcccccc-eeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh
Q 000849 547 -EKGQIIISTPEKWDALSRRWKQRKYVQ-QVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624 (1254)
Q Consensus 547 -~~~~Iiv~Tpe~l~~l~~~~~~~~~l~-~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~ 624 (1254)
....|+|+|..++.............. .-.+||+||||+.... . +...++.. -++..++|+|||+-..
T Consensus 336 ~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---~---~~~~l~~~----~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 336 KDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---E---LAKNLKKA----LKNASFFGFTGTPIFK 405 (667)
T ss_pred CCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---H---HHHHHHhh----CCCCcEEEEeCCCccc
Confidence 235899999999964333221111111 1138999999976521 1 22223222 2467899999998532
Q ss_pred HH--HHHhhcCCC-CeeEe--cCCCC---cccccEEEEeec----cCCCh----HHH---------------H----Hh-
Q 000849 625 KD--LGEWIGASS-HGVFN--FPPGV---RPVPLEIQIQGV----DITNF----EAR---------------M----KA- 668 (1254)
Q Consensus 625 ~~--l~~~l~~~~-~~~~~--~~~~~---r~v~l~~~~~~~----~~~~~----~~~---------------~----~~- 668 (1254)
.+ -...++... ..++. +.... -.+|+....... ..... ... + ..
T Consensus 406 ~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (667)
T TIGR00348 406 KDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKT 485 (667)
T ss_pred ccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 11 112222110 11111 11100 111111110000 00000 000 0 00
Q ss_pred --------hCHHHHHHHHhhh-----hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcCh
Q 000849 669 --------MTKPTYTAIMQHA-----KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE 735 (1254)
Q Consensus 669 --------~~~~~~~~i~~~~-----~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 735 (1254)
........+.++. ..+.+++|||.++..|..+.+.|.+.......... .+...........
T Consensus 486 ~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~-vv~s~~~~~~~~~----- 559 (667)
T TIGR00348 486 KKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA-IVMTGKESDDAEI----- 559 (667)
T ss_pred HhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee-EEecCCccchhHH-----
Confidence 0011112222222 12589999999999999999888665433210000 1100000000000
Q ss_pred HHHHHHhhccceeecCCC-CHHHHHHHHHHHhc-CCceEEEeCcccccccCCc-ceeecccccCCHHHHHHhhcccCCC
Q 000849 736 EMLRATLRLGVGYLHEGL-NKSDQEVVSTLFEA-GKIKVCVMSSSMCWEVPLT-AHLATGRKMLILTTLLQMMGHAGRP 811 (1254)
Q Consensus 736 ~~L~~~l~~~v~~~h~~l-~~~~R~~v~~~F~~-g~~~VLVaT~~l~~Gvdip-~~~V~~~~~~s~~~~~Qr~GRaGR~ 811 (1254)
....+.++. .++.- ..+....+.++|++ +.++|||+++.+.+|+|.| ..++-.+.|..-..++|++||+.|.
T Consensus 560 ~~~~~~~~~----~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 560 RDYNKHIRT----KFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYHGLLQAIARTNRI 634 (667)
T ss_pred HHHHHHhcc----ccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccccHHHHHHHHhccc
Confidence 001111110 00100 11234578889976 6899999999999999999 5555445555555689999999995
No 129
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.68 E-value=5.9e-15 Score=181.53 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=99.9
Q ss_pred HHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecC
Q 000849 672 PTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHE 751 (1254)
Q Consensus 672 ~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~ 751 (1254)
.+...+......+.+++|||+|++.++.++..|... +..+..+||
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-----------------------------------gi~~~~lh~ 474 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-----------------------------------GIKVRYLHS 474 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-----------------------------------ccceeeeeC
Confidence 344555555577899999999999999999877432 446788999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-ccc-----ccCCHHHHHHhhcccCCCCCCCCceEEEEcc
Q 000849 752 GLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGR-----KMLILTTLLQMMGHAGRPLLDNSEKCVILCH 824 (1254)
Q Consensus 752 ~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~-----~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~ 824 (1254)
++++.+|..+++.|++|+++|||||+.+++|+|+| +.+| ..+ .|.+..+|+||+|||||.. .|.++++++
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~ 551 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYAD 551 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEc
Confidence 99999999999999999999999999999999999 5544 333 5678999999999999985 799999988
Q ss_pred CCcHH
Q 000849 825 APHKE 829 (1254)
Q Consensus 825 ~~~~~ 829 (1254)
.....
T Consensus 552 ~~~~~ 556 (655)
T TIGR00631 552 KITDS 556 (655)
T ss_pred CCCHH
Confidence 66543
No 130
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.68 E-value=6.5e-15 Score=164.95 Aligned_cols=117 Identities=20% Similarity=0.240 Sum_probs=100.2
Q ss_pred HHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecC
Q 000849 672 PTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHE 751 (1254)
Q Consensus 672 ~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~ 751 (1254)
.++..|.+....+.+++|-+-|++.++.+...|.. .+..+.++|+
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e-----------------------------------~gikv~YlHS 478 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE-----------------------------------LGIKVRYLHS 478 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh-----------------------------------cCceEEeeec
Confidence 45666666668899999999999999988877743 2678999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee---cccc---cCCHHHHHHhhcccCCCCCCCCceEEEEcc
Q 000849 752 GLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA---TGRK---MLILTTLLQMMGHAGRPLLDNSEKCVILCH 824 (1254)
Q Consensus 752 ~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V---~~~~---~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~ 824 (1254)
+...-+|..++..++.|..+|||+-+.|-.|+|+| +.+| +.+. ..|-.+++|-+|||.|.- .|.++++++
T Consensus 479 didTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~---~GkvIlYAD 555 (663)
T COG0556 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVILYAD 555 (663)
T ss_pred cchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc---CCeEEEEch
Confidence 99999999999999999999999999999999999 7777 3332 278899999999999976 799998876
Q ss_pred CC
Q 000849 825 AP 826 (1254)
Q Consensus 825 ~~ 826 (1254)
.-
T Consensus 556 ~i 557 (663)
T COG0556 556 KI 557 (663)
T ss_pred hh
Confidence 43
No 131
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.67 E-value=9.8e-16 Score=166.38 Aligned_cols=282 Identities=14% Similarity=0.140 Sum_probs=217.6
Q ss_pred hhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCChhhHHHHHHHHhhcCcccCCCCCCChHHHHHHHHHHHhc
Q 000849 935 YYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFS 1014 (1254)
Q Consensus 935 ~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~ 1014 (1254)
+-+|.+.|+.+|+..+....+...+|+++|+|.||..+.- ..|..-.--|+++|++
T Consensus 224 k~gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~p------------------------k~pk~~~ekll~dhln 279 (610)
T COG5407 224 KVGVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMNP------------------------KGPKCTLEKLLGDHLN 279 (610)
T ss_pred ccceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhCC------------------------CCCchhHHHHHHHHHh
Confidence 3457888999999999888889999999999999865521 0122334458999999
Q ss_pred CCCCC-cchHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC-CCccccCCCCCHHHHHHHHcCC
Q 000849 1015 ARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEH-DSMLLQLPHFTKDLAKRCQENP 1092 (1254)
Q Consensus 1015 r~~l~-~~l~~D~~~il~~~~rl~~a~~ei~~~~~~~~~~~~~~~l~q~i~q~~w~~-~~~L~Qlp~i~~~~~~~l~~~~ 1092 (1254)
|..-. .. ...|+.++.-+++|+.+|++..++...+...+.+.|||+|++.-+ ..+++|+|+.+.+.+..+.-..
T Consensus 280 r~~s~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~ 355 (610)
T COG5407 280 RARSVEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRL 355 (610)
T ss_pred Hhhcccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhh
Confidence 96443 22 578999999999999999999999999999999999999999876 5689999999999998877666
Q ss_pred CCCccCHHHHhcCCHHHHHHHhc-CChhhHHHHHHHhccCCceEE---EEEEecccccccCCceEEEEE--EEEecC---
Q 000849 1093 GRSIETVFDLLEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDM---SYKVQDSENVRAGGEDTTLQV--VLERDL--- 1163 (1254)
Q Consensus 1093 ~~~i~~~~~l~~~~~~~~~~ll~-~~~~~~~~i~~~~~~~P~l~v---~~~v~~~~~i~~~~~~~~l~v--~l~r~~--- 1163 (1254)
|.++.++..+.+.+....|+ +...+++++.++++++|++.+ .+-+.+++.|++ ++.-.+.. .+.-..
T Consensus 356 ---I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~-~s~~~vslk~~~g~~~~pe 431 (610)
T COG5407 356 ---IEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITE-KSKERVSLKGYLGAIPGPE 431 (610)
T ss_pred ---hhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecc-cceeeEEEEEEeccccCCc
Confidence 89999999988888888887 788899999999999999876 455666777887 65543333 221110
Q ss_pred ------------C----------------CCCCcCccccCCCCCCCcccEEEEEEeCCCCeEEEEEEeeec----ccceE
Q 000849 1164 ------------G----------------GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQ----RKSRA 1211 (1254)
Q Consensus 1164 ------------~----------------~~~~~~~v~~p~~p~~k~e~wwv~v~d~~~~~l~~~~~~~~~----~~~~~ 1211 (1254)
+ +.+..+..+||+||....-.||+.|.+++++.++ +...++. .....
T Consensus 432 ~~ts~~~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~I-ip~~Si~~v~K~~~d~ 510 (610)
T COG5407 432 HRTSALNVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYI-IPGGSIATVSKVTLDR 510 (610)
T ss_pred ccccccccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEE-eCCccccccchhhhhc
Confidence 0 0011357899999999999999999999877654 3334432 23456
Q ss_pred EEEEEeecCCCceEEEEEEEeCCccccCeEEEEEEEee
Q 000849 1212 KLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVK 1249 (1254)
Q Consensus 1212 ~~~f~~p~~~g~~~~~v~~~sD~y~G~D~~~~~~~~v~ 1249 (1254)
+++|.+|+-.|+..+.+++++-+|+|.+.-..+.+-++
T Consensus 511 Ri~~dv~pvd~T~~~ql~~~ap~~vg~f~~~~ivm~t~ 548 (610)
T COG5407 511 RIQGDVAPVDKTGGKQLIVHAPFMVGAFSVKWIVMLTV 548 (610)
T ss_pred ccccccCccccccceeeeecCchhhccceeeeEEEEee
Confidence 77778775567778899999999999988777655443
No 132
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=3.6e-17 Score=188.04 Aligned_cols=130 Identities=27% Similarity=0.392 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|.|..++.||-+|.+|.++||+||-|+++|+|+||++||+...+.|||+..+| +|.-+|.||+|||||.|.|+.|.+|
T Consensus 456 LLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw--issGEYIQMSGRAGRRG~DdrGivI 533 (1041)
T KOG0948|consen 456 LLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW--ISSGEYIQMSGRAGRRGIDDRGIVI 533 (1041)
T ss_pred chHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee--ecccceEEecccccccCCCCCceEE
Confidence 56778999999999999999999999999999999999999999999988777 9999999999999999999999999
Q ss_pred EEecCCcH-HHHHHhh-cCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcce
Q 000849 81 IITGHSEL-QYYLSLM-NQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYL 137 (1254)
Q Consensus 81 i~~~~~~~-~~~~~~~-~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~ 137 (1254)
+|.+.... .....++ +++.|+.|.|+..+...||-.-+.|. ++ ...|.++|+
T Consensus 534 lmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRvEei--~p---e~~l~~SF~ 587 (1041)
T KOG0948|consen 534 LMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRVEEI--SP---EYMLERSFH 587 (1041)
T ss_pred EEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHccC--CH---HHHHHHHHH
Confidence 99987543 3445555 55569999999999999998766654 22 345677776
No 133
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.66 E-value=1e-14 Score=184.90 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=104.7
Q ss_pred cEEEEecCCCC--ChHHHHHhhcCCCCeeEecCCCCcccccEEEEe-eccCC---ChHHHHHhhCHHHHHHHHhhhhcCC
Q 000849 612 IRIVALSTSLA--NAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQ-GVDIT---NFEARMKAMTKPTYTAIMQHAKNEK 685 (1254)
Q Consensus 612 ~rii~lSATl~--~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~-~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~ 685 (1254)
..+|++|||++ +..++.+.+|.........+..+... ....+. ..+.. ........ +.+.+......++
T Consensus 574 ~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~-~~~~i~~~~p~~~~~~~~~~~~~----~~~~i~~~~~~~g 648 (820)
T PRK07246 574 CKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQD-QLVVVDQDMPLVTETSDEVYAEE----IAKRLEELKQLQQ 648 (820)
T ss_pred CeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHc-cEEEeCCCCCCCCCCChHHHHHH----HHHHHHHHHhcCC
Confidence 46799999996 22347778886532222222111111 111111 11111 11111112 2222322224578
Q ss_pred CeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHH
Q 000849 686 PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF 765 (1254)
Q Consensus 686 ~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F 765 (1254)
+++|+++|.+..+.++..|... ...+ +..|.-. .|..+.+.|
T Consensus 649 ~~LVLFtS~~~l~~v~~~l~~~-----------------------------------~~~~-l~Qg~~~--~~~~l~~~F 690 (820)
T PRK07246 649 PILVLFNSKKHLLAVSDLLDQW-----------------------------------QVSH-LAQEKNG--TAYNIKKRF 690 (820)
T ss_pred CEEEEECcHHHHHHHHHHHhhc-----------------------------------CCcE-EEeCCCc--cHHHHHHHH
Confidence 9999999999998887766321 0112 2222111 245688999
Q ss_pred hcCCceEEEeCcccccccCCc---ce-ee-----------------------ccccc---C----CHHHHHHhhcccCCC
Q 000849 766 EAGKIKVCVMSSSMCWEVPLT---AH-LA-----------------------TGRKM---L----ILTTLLQMMGHAGRP 811 (1254)
Q Consensus 766 ~~g~~~VLVaT~~l~~Gvdip---~~-~V-----------------------~~~~~---~----s~~~~~Qr~GRaGR~ 811 (1254)
+++...||++|..+.+|||+| .. +| .|..+ + -...+.|-+||.-|.
T Consensus 691 ~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs 770 (820)
T PRK07246 691 DRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRR 770 (820)
T ss_pred HcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccC
Confidence 999899999999999999997 12 22 11111 1 135689999999998
Q ss_pred CCCCCceEEEEccCCcHHHHHHhhcCCcc
Q 000849 812 LLDNSEKCVILCHAPHKEYYKKFLYEAFP 840 (1254)
Q Consensus 812 g~d~~G~~iil~~~~~~~~~~~~l~~~~p 840 (1254)
.. +.|.++++-..-....|.+.+-..+|
T Consensus 771 ~~-D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 771 ED-QKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred CC-CcEEEEEECCcccccHHHHHHHHhCC
Confidence 85 48988877665444455444444455
No 134
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.65 E-value=1.1e-14 Score=183.90 Aligned_cols=85 Identities=12% Similarity=0.014 Sum_probs=73.1
Q ss_pred hccceeecCCCCHHHHHHHHHHHhcC---CceEEEeCcccccccCCc-c-eeecccccCCHHHHHHhhcccCCCCCCCCc
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFEAG---KIKVCVMSSSMCWEVPLT-A-HLATGRKMLILTTLLQMMGHAGRPLLDNSE 817 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~~g---~~~VLVaT~~l~~Gvdip-~-~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G 817 (1254)
+++...+||+++..+|..+++.|.+. ..-+|++|.+.+.|||+. + ++|.++.+.++....|++||+-|.|+...-
T Consensus 511 g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V 590 (1033)
T PLN03142 511 GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEV 590 (1033)
T ss_pred CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceE
Confidence 66788899999999999999999753 346789999999999999 4 555999999999999999999999987777
Q ss_pred eEEEEccCCc
Q 000849 818 KCVILCHAPH 827 (1254)
Q Consensus 818 ~~iil~~~~~ 827 (1254)
.+|.++....
T Consensus 591 ~VyRLIt~gT 600 (1033)
T PLN03142 591 QVFRFCTEYT 600 (1033)
T ss_pred EEEEEEeCCc
Confidence 7777777653
No 135
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.62 E-value=2.2e-15 Score=169.01 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+-.+|+.||.+|.+|.+.++|.|++||+||++||..||+-+.-.- ..| +++.+|.||.||||||+|.+.|++|
T Consensus 474 L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG----~~W--Ls~~EF~QM~GRAGRp~yHdrGkVy 547 (830)
T COG1202 474 LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMG----IEW--LSVREFQQMLGRAGRPDYHDRGKVY 547 (830)
T ss_pred CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcc----ccc--CCHHHHHHHhcccCCCCcccCceEE
Confidence 6778999999999999999999999999999999999999765542 234 9999999999999999999999999
Q ss_pred EEecCCc----------HHHHHHhh-cCCCCchhhHHH-HHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCccc
Q 000849 81 IITGHSE----------LQYYLSLM-NQQLPIESQFVS-KLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLY 148 (1254)
Q Consensus 81 i~~~~~~----------~~~~~~~~-~~~~~i~s~l~~-~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y 148 (1254)
++..... .+...+++ +.++|+.-.... .-.+.++| ..|..++..+..+.-..++.+
T Consensus 548 llvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g~---------- 615 (830)
T COG1202 548 LLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLGA---------- 615 (830)
T ss_pred EEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhccc----------
Confidence 9986422 22333444 444565444433 22333333 444444544443322222221
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHHHhhhcCcccccCccCceeec
Q 000849 149 GLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSE 192 (1254)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t 192 (1254)
.. -...++..|++.|||..+ ++.+.+|
T Consensus 616 --~~-------------~~~k~l~~Lee~g~i~~~--G~~v~~T 642 (830)
T COG1202 616 --AF-------------DPKKALSKLEEYGMIKKK--GNIVRPT 642 (830)
T ss_pred --cC-------------CHHHHHHHHHhcCCeecc--CCEeeec
Confidence 00 134688899999999765 4556666
No 136
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.61 E-value=3.9e-14 Score=169.85 Aligned_cols=278 Identities=17% Similarity=0.138 Sum_probs=174.1
Q ss_pred HHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHH
Q 000849 441 LVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDW 520 (1254)
Q Consensus 441 lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~ 520 (1254)
+...|.+...|.++.+|+-+...+-.+...-++||||.|||+-.++..+-... .++ +++||+||..|+.|.++++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---kgk--r~yii~PT~~Lv~Q~~~kl 145 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---KGK--RVYIIVPTTTLVRQVYERL 145 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh---cCC--eEEEEecCHHHHHHHHHHH
Confidence 34445678889999999999999999988888899999999866555443333 245 9999999999999999999
Q ss_pred HHhhccccCcEEEE-eccccccch-----hhccc--CcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCcc
Q 000849 521 ERKFGKELGMCVVE-LTVETAMDL-----KLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 592 (1254)
Q Consensus 521 ~~~~~~~~~~~v~~-~~g~~~~~~-----~~~~~--~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~ 592 (1254)
.+.-....+..+.. .+|..+... ..+.+ .||+|+|..-+..-..... --++++|++|++|.+.- .+.
T Consensus 146 ~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~----~~kFdfifVDDVDA~Lk-ask 220 (1187)
T COG1110 146 KKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS----KLKFDFIFVDDVDAILK-ASK 220 (1187)
T ss_pred HHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc----ccCCCEEEEccHHHHHh-ccc
Confidence 87443331133322 566544332 23333 5999999776532222211 13689999999997762 222
Q ss_pred HHHHHHHHH-----------------------------HHHHh--------hcCCCcEEEEecCCCCCh----HHHHHhh
Q 000849 593 VLEVIVARM-----------------------------RYIAS--------QVENKIRIVALSTSLANA----KDLGEWI 631 (1254)
Q Consensus 593 ~~e~~~~~l-----------------------------~~~~~--------~~~~~~rii~lSATl~~~----~~l~~~l 631 (1254)
+.+.++..+ +.... +-.+..++|..|||.... .-+.+.|
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 222221111 10100 112457899999998633 3344555
Q ss_pred cCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecC---hhhHHHHHHHHHHHh
Q 000849 632 GASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPS---RKYARLTAVDLMIYS 708 (1254)
Q Consensus 632 ~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s---~~~~~~la~~L~~~~ 708 (1254)
|-.. ......+.-.+..+..... .......+.+. +.-.|||++. ++.++.++..|..
T Consensus 301 gFev--------G~~~~~LRNIvD~y~~~~~-------~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~-- 360 (1187)
T COG1110 301 GFEV--------GSGGEGLRNIVDIYVESES-------LEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRS-- 360 (1187)
T ss_pred CCcc--------CccchhhhheeeeeccCcc-------HHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHh--
Confidence 5432 2211112111111111111 11122233222 5578999999 6777777766643
Q ss_pred hccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeC----cccccccC
Q 000849 709 CKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMS----SSMCWEVP 784 (1254)
Q Consensus 709 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT----~~l~~Gvd 784 (1254)
.+..+..+|++ +...++.|..|++++||+. .++.+|+|
T Consensus 361 ---------------------------------~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlD 402 (1187)
T COG1110 361 ---------------------------------HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLD 402 (1187)
T ss_pred ---------------------------------cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCC
Confidence 25667788883 3778999999999999986 48999999
Q ss_pred Cc
Q 000849 785 LT 786 (1254)
Q Consensus 785 ip 786 (1254)
+|
T Consensus 403 LP 404 (1187)
T COG1110 403 LP 404 (1187)
T ss_pred ch
Confidence 99
No 137
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=3.8e-14 Score=159.20 Aligned_cols=280 Identities=19% Similarity=0.208 Sum_probs=178.5
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-hc
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-LL 546 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-~~ 546 (1254)
.+++-+|||.||||.-+ ++.+.. .+ +.+|.-|.|-||.++++++.+ .|+.+..+||....... .-
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~---ak--sGvycGPLrLLA~EV~~r~na-----~gipCdL~TGeE~~~~~~~~ 257 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKS---AK--SGVYCGPLRLLAHEVYDRLNA-----LGIPCDLLTGEERRFVLDNG 257 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhh---hc--cceecchHHHHHHHHHHHhhh-----cCCCccccccceeeecCCCC
Confidence 45788899999999755 455555 34 679999999999999999886 48899999997553321 11
Q ss_pred ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChH
Q 000849 547 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAK 625 (1254)
Q Consensus 547 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~ 625 (1254)
..+..+=||-|+.. .-..+++.||||++++.+ .||-.+-..+--+. ...+.+.|=-|-++=.+
T Consensus 258 ~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~ 321 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVR 321 (700)
T ss_pred CcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHH
Confidence 23578888877651 134689999999999998 78876654332111 12333333222222123
Q ss_pred HHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHH
Q 000849 626 DLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLM 705 (1254)
Q Consensus 626 ~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~ 705 (1254)
++.+--|... ......|-.|+.+. +.....+... .+|.-++ |-|++....+...+.
T Consensus 322 ~i~k~TGd~v----ev~~YeRl~pL~v~-----------------~~~~~sl~nl-k~GDCvV--~FSkk~I~~~k~kIE 377 (700)
T KOG0953|consen 322 KILKMTGDDV----EVREYERLSPLVVE-----------------ETALGSLSNL-KPGDCVV--AFSKKDIFTVKKKIE 377 (700)
T ss_pred HHHhhcCCee----EEEeecccCcceeh-----------------hhhhhhhccC-CCCCeEE--EeehhhHHHHHHHHH
Confidence 3333333221 11111222222211 0111222111 3343333 446666666655553
Q ss_pred HHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhc--CCceEEEeCccccccc
Q 000849 706 IYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEA--GKIKVCVMSSSMCWEV 783 (1254)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~--g~~~VLVaT~~l~~Gv 783 (1254)
.. ....+++++|+|+++.|..--..|.+ ++.+|||||+++++|+
T Consensus 378 ~~----------------------------------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGL 423 (700)
T KOG0953|consen 378 KA----------------------------------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGL 423 (700)
T ss_pred Hh----------------------------------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccc
Confidence 22 13458999999999999999999987 8999999999999999
Q ss_pred CCc-ceee-------ccc--ccCCHHHHHHhhcccCCCCCC-CCceEEEEccCCcHHHHHHhhc
Q 000849 784 PLT-AHLA-------TGR--KMLILTTLLQMMGHAGRPLLD-NSEKCVILCHAPHKEYYKKFLY 836 (1254)
Q Consensus 784 dip-~~~V-------~~~--~~~s~~~~~Qr~GRaGR~g~d-~~G~~iil~~~~~~~~~~~~l~ 836 (1254)
|+. .++| +|+ .+.+..+..|.+|||||.|.. ..|.+..+..+ +.....+.++
T Consensus 424 NL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e-DL~~L~~~l~ 486 (700)
T KOG0953|consen 424 NLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE-DLKLLKRILK 486 (700)
T ss_pred ccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh-hHHHHHHHHh
Confidence 999 5555 333 237889999999999998742 35777666553 4555666555
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.59 E-value=3.3e-13 Score=174.51 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=86.4
Q ss_pred cCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHH
Q 000849 683 NEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVS 762 (1254)
Q Consensus 683 ~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~ 762 (1254)
.+++++||++|.+..+.++..|...... .+...+.-|++...|..+.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~---------------------------------~~~~ll~Qg~~~~~r~~l~ 797 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEEL---------------------------------EGYVLLAQGVSSGSRARLT 797 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccc---------------------------------cCceEEecCCCCCCHHHHH
Confidence 5679999999999999888777432110 1122233355556688999
Q ss_pred HHHhcCCceEEEeCcccccccCCcc----eee-----------------------ccccc---C----CHHHHHHhhccc
Q 000849 763 TLFEAGKIKVCVMSSSMCWEVPLTA----HLA-----------------------TGRKM---L----ILTTLLQMMGHA 808 (1254)
Q Consensus 763 ~~F~~g~~~VLVaT~~l~~Gvdip~----~~V-----------------------~~~~~---~----s~~~~~Qr~GRa 808 (1254)
+.|++++-.||++|..+.+|||+|. .+| .|..+ + ....+.|.+||.
T Consensus 798 ~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRl 877 (928)
T PRK08074 798 KQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRL 877 (928)
T ss_pred HHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhh
Confidence 9999998899999999999999992 222 11111 1 245679999999
Q ss_pred CCCCCCCCceEEEEccCCcHHHHHHhhcCCcc
Q 000849 809 GRPLLDNSEKCVILCHAPHKEYYKKFLYEAFP 840 (1254)
Q Consensus 809 GR~g~d~~G~~iil~~~~~~~~~~~~l~~~~p 840 (1254)
-|...| .|.++++-..-....|.+.+-..+|
T Consensus 878 IRs~~D-~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 878 IRTETD-RGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred cccCCc-eEEEEEecCccccchHHHHHHHhCC
Confidence 999854 8888877766555556555555555
No 139
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.58 E-value=1.5e-13 Score=170.92 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=97.8
Q ss_pred HHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecC
Q 000849 672 PTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHE 751 (1254)
Q Consensus 672 ~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~ 751 (1254)
.+...+......+.+++|||+|++.++.++..|... +..+..+||
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-----------------------------------gi~~~~~h~ 478 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-----------------------------------GIKVRYLHS 478 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-----------------------------------ceeEEEEEC
Confidence 344555555577899999999999999999877431 456888999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-ceee-ccc-----ccCCHHHHHHhhcccCCCCCCCCceEEEEcc
Q 000849 752 GLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGR-----KMLILTTLLQMMGHAGRPLLDNSEKCVILCH 824 (1254)
Q Consensus 752 ~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~~~V-~~~-----~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~ 824 (1254)
++++.+|..+++.|++|.+.|+|||+.+++|+|+| +.+| ..+ .|.+..+|+||+||+||.. .|.|+++++
T Consensus 479 ~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~---~G~~i~~~~ 555 (652)
T PRK05298 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVILYAD 555 (652)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCC---CCEEEEEec
Confidence 99999999999999999999999999999999999 5444 333 3578999999999999963 799999998
Q ss_pred CCc
Q 000849 825 APH 827 (1254)
Q Consensus 825 ~~~ 827 (1254)
...
T Consensus 556 ~~~ 558 (652)
T PRK05298 556 KIT 558 (652)
T ss_pred CCC
Confidence 543
No 140
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2.9e-12 Score=152.87 Aligned_cols=132 Identities=17% Similarity=0.060 Sum_probs=94.3
Q ss_pred hcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
.+...+.+.|-=..-.+.+ --|....||+|||+++.+|++..... ++ .|-+++|+.-||.+-++.+...+..
T Consensus 74 ~lg~r~ydvQlig~l~Ll~--G~VaEM~TGEGKTLvA~l~a~l~AL~---G~--~VhvvT~NdyLA~RDae~m~~ly~~- 145 (764)
T PRK12326 74 TLGLRPFDVQLLGALRLLA--GDVIEMATGEGKTLAGAIAAAGYALQ---GR--RVHVITVNDYLARRDAEWMGPLYEA- 145 (764)
T ss_pred HcCCCcchHHHHHHHHHhC--CCcccccCCCCHHHHHHHHHHHHHHc---CC--CeEEEcCCHHHHHHHHHHHHHHHHh-
Confidence 3444444555444444432 24556999999999999998876665 44 7999999999999999999887776
Q ss_pred cCcEEEEeccccccch-hhcccCcEEEEcHhhH-HHHHHhhh----cccccceeeEEEeccccccc
Q 000849 528 LGMCVVELTVETAMDL-KLLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~v~liIiDEaH~l~ 587 (1254)
+|++|+.++++.+... +..-.+||+++|..-| -+.+|... .......+.+.||||+|.++
T Consensus 146 LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 4999999999876543 3344689999999876 22333221 12234568899999999664
No 141
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.52 E-value=1.4e-14 Score=159.78 Aligned_cols=322 Identities=15% Similarity=0.187 Sum_probs=183.1
Q ss_pred CCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCC
Q 000849 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETG 499 (1254)
Q Consensus 420 ~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~ 499 (1254)
..++|+|++++..++.++. ...-|++.|.|+|||++..-++. .-++
T Consensus 301 t~iRpYQEksL~KMFGNgR----------------------------ARSGiIVLPCGAGKtLVGvTAa~------tikK 346 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGR----------------------------ARSGIIVLPCGAGKTLVGVTAAC------TIKK 346 (776)
T ss_pred cccCchHHHHHHHHhCCCc----------------------------ccCceEEEecCCCCceeeeeeee------eecc
Confidence 3677999999999985433 11123337999999998866543 2234
Q ss_pred CcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHh-hhcc-----cccc
Q 000849 500 VMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRR-WKQR-----KYVQ 573 (1254)
Q Consensus 500 ~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~-~~~~-----~~l~ 573 (1254)
++++++.+-.-+.|....|+. +.....-.++.+|.|..... -..+.|+|+|+.++..--++ +... ..-+
T Consensus 347 --~clvLcts~VSVeQWkqQfk~-wsti~d~~i~rFTsd~Ke~~--~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~ 421 (776)
T KOG1123|consen 347 --SCLVLCTSAVSVEQWKQQFKQ-WSTIQDDQICRFTSDAKERF--PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGR 421 (776)
T ss_pred --cEEEEecCccCHHHHHHHHHh-hcccCccceEEeeccccccC--CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcC
Confidence 799999998888888777765 44444556778887765322 23568999998876322211 1111 1235
Q ss_pred eeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHH----H----------HHhhcCCCCee-
Q 000849 574 QVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKD----L----------GEWIGASSHGV- 638 (1254)
Q Consensus 574 ~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~----l----------~~~l~~~~~~~- 638 (1254)
.++++++||+|.+.. .. +.|+..+. ..++ -+|++||+-..+| + ++|+.....+.
T Consensus 422 EWGllllDEVHvvPA---~M----FRRVlsiv---~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhI 490 (776)
T KOG1123|consen 422 EWGLLLLDEVHVVPA---KM----FRRVLSIV---QAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHI 490 (776)
T ss_pred eeeeEEeehhccchH---HH----HHHHHHHH---HHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCce
Confidence 789999999997762 22 23332222 1233 3899999864322 1 23443322111
Q ss_pred EecC--CCCcccccEEEEeeccCCChH-HHHHhhCHHHHHH----HHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhcc
Q 000849 639 FNFP--PGVRPVPLEIQIQGVDITNFE-ARMKAMTKPTYTA----IMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKD 711 (1254)
Q Consensus 639 ~~~~--~~~r~v~l~~~~~~~~~~~~~-~~~~~~~~~~~~~----i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~ 711 (1254)
-+.. .-+-|..-+.+-......... ..+..|+...|.. |.-+-..+.++|||..+.-.....|
T Consensus 491 A~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA---------- 560 (776)
T KOG1123|consen 491 AKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA---------- 560 (776)
T ss_pred eEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH----------
Confidence 1100 000000000000000000000 0001122211211 1112245666777765543332222
Q ss_pred CcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcC-CceEEEeCcccccccCCc-cee
Q 000849 712 SDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAG-KIKVCVMSSSMCWEVPLT-AHL 789 (1254)
Q Consensus 712 ~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g-~~~VLVaT~~l~~Gvdip-~~~ 789 (1254)
+..+--+++|..++.+|..|++.|+-+ .+..++-+.+...++|+| +.+
T Consensus 561 ------------------------------ikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnv 610 (776)
T KOG1123|consen 561 ------------------------------IKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANV 610 (776)
T ss_pred ------------------------------HHcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccE
Confidence 234566789999999999999999855 788899999999999999 655
Q ss_pred e-ccccc-CCHHHHHHhhcccCCCCC--C--CCceEEEEccCCcHHHH
Q 000849 790 A-TGRKM-LILTTLLQMMGHAGRPLL--D--NSEKCVILCHAPHKEYY 831 (1254)
Q Consensus 790 V-~~~~~-~s~~~~~Qr~GRaGR~g~--d--~~G~~iil~~~~~~~~~ 831 (1254)
+ +-..+ -|..+-.||.||.-|+.. | -....|.+++.+..+.|
T Consensus 611 LIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 611 LIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred EEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 5 21112 377888999999888642 1 13455566666554443
No 142
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.52 E-value=3.1e-13 Score=165.87 Aligned_cols=314 Identities=15% Similarity=0.073 Sum_probs=179.5
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh-----hc--
Q 000849 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-----LL-- 546 (1254)
Q Consensus 474 apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~-- 546 (1254)
+.+|||||.+|+-.+-..+.. ++ .+|+++|..+|+.|+.+++++.|+. ..+..++++.+...+ ..
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~---Gk--~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA---GR--GALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc---CC--eEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHhC
Confidence 446999999998888777776 55 8999999999999999999998862 457888887665432 11
Q ss_pred ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC--CCccHHHHH-HHHHHHHHhhcCCCcEEEEecCCCCC
Q 000849 547 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVI-VARMRYIASQVENKIRIVALSTSLAN 623 (1254)
Q Consensus 547 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~--~~g~~~e~~-~~~l~~~~~~~~~~~rii~lSATl~~ 623 (1254)
.+.+|+|+| +......+.++++|||||-|.-.- ++++.+..- ++.++.. ..+..+|+.|||.+
T Consensus 239 G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~----~~~~~lvLgSaTPS- 304 (665)
T PRK14873 239 GQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH----QHGCALLIGGHART- 304 (665)
T ss_pred CCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH----HcCCcEEEECCCCC-
Confidence 235899999 333345689999999999996553 344443211 2222211 35889999999974
Q ss_pred hHHHHHhhcCCCCeeEecC---CCCcccccEEEEeeccCCChH----HHHHhhCHHHHHHHHhhhhcCCCeEEEecChhh
Q 000849 624 AKDLGEWIGASSHGVFNFP---PGVRPVPLEIQIQGVDITNFE----ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKY 696 (1254)
Q Consensus 624 ~~~l~~~l~~~~~~~~~~~---~~~r~v~l~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~ 696 (1254)
.+.. ............ ...+.....+.+.+....... .....+...++..+.+.+..+ ++|||+|.+..
T Consensus 305 les~---~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGy 380 (665)
T PRK14873 305 AEAQ---ALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGY 380 (665)
T ss_pred HHHH---HHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCC
Confidence 3332 222111111111 011111112333322110000 000125567788888888888 99999999987
Q ss_pred HHHHHHHHHHHhhccCccc---------c--cccccCh------------hchhhHHhhc--ChHHHHHHhh-ccceeec
Q 000849 697 ARLTAVDLMIYSCKDSDQK---------S--AFLLCSA------------KEVEPHVSII--QEEMLRATLR-LGVGYLH 750 (1254)
Q Consensus 697 ~~~la~~L~~~~~~~~~~~---------~--~~~~~~~------------~~l~~~~~~~--~~~~L~~~l~-~~v~~~h 750 (1254)
+-.+...=+.......+.. . .+-.|.. ..+....-+. ..+.|.+.+. ..|..
T Consensus 381 ap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r-- 458 (665)
T PRK14873 381 VPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVT-- 458 (665)
T ss_pred CCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEE--
Confidence 7554432211111111000 0 0111211 1111111011 1244555443 33332
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeCc----ccccccCCc-ceeeccc---------cc-CCHHHHHHhhcccCCCCCCC
Q 000849 751 EGLNKSDQEVVSTLFEAGKIKVCVMSS----SMCWEVPLT-AHLATGR---------KM-LILTTLLQMMGHAGRPLLDN 815 (1254)
Q Consensus 751 ~~l~~~~R~~v~~~F~~g~~~VLVaT~----~l~~Gvdip-~~~V~~~---------~~-~s~~~~~Qr~GRaGR~g~d~ 815 (1254)
.+++.+++.|. ++.+|||+|. .++ | ++. +-+++.+ .. .....+.|-+|||||...
T Consensus 459 -----~d~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~-- 528 (665)
T PRK14873 459 -----SGGDQVVDTVD-AGPALVVATPGAEPRVE-G-GYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRAD-- 528 (665)
T ss_pred -----EChHHHHHhhc-cCCCEEEECCCCccccc-C-CceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCC--
Confidence 22345888997 5999999998 666 3 333 2222222 11 345677899999999764
Q ss_pred CceEEEEccC
Q 000849 816 SEKCVILCHA 825 (1254)
Q Consensus 816 ~G~~iil~~~ 825 (1254)
.|.+++.+.+
T Consensus 529 ~G~V~iq~~p 538 (665)
T PRK14873 529 GGQVVVVAES 538 (665)
T ss_pred CCEEEEEeCC
Confidence 8999998633
No 143
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.52 E-value=2e-13 Score=146.00 Aligned_cols=145 Identities=24% Similarity=0.252 Sum_probs=101.4
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecccccc-chh-h
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM-DLK-L 545 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~-~~~-~ 545 (1254)
..+++.+|||+|||.++..++++.+.. ...+ +++|++|+++++.|..+.+.+.+....+.......+.... ... .
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~-~~~~--~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKR-GKGK--RVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcc-cCCC--cEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHH
Confidence 344555999999999999999888776 2234 8999999999999999999876654311444444444321 111 2
Q ss_pred cccC-cEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 000849 546 LEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623 (1254)
Q Consensus 546 ~~~~-~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~ 623 (1254)
.... +++++|++.+........ .....++++|+||+|.+.. .....+..++.. .....+++++|||+++
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~-------~~~~~~~v~~saT~~~ 172 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKLLKL-------LPKNVQLLLLSATPPE 172 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh-------CCccceEEEEecCCch
Confidence 2334 999999999966665532 3467889999999999986 443333333322 2467899999999975
Q ss_pred h
Q 000849 624 A 624 (1254)
Q Consensus 624 ~ 624 (1254)
.
T Consensus 173 ~ 173 (201)
T smart00487 173 E 173 (201)
T ss_pred h
Confidence 4
No 144
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1.4e-12 Score=159.83 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=90.1
Q ss_pred hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHH
Q 000849 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVV 761 (1254)
Q Consensus 682 ~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v 761 (1254)
..+.|+||||+|+..++.++..|... +.....+|+ .+.+|+..
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~-----------------------------------gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAK-----------------------------------RIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHc-----------------------------------CCCceeecC--CHHHhHHH
Confidence 57899999999999999999877542 334667887 68899999
Q ss_pred HHHHhcCCceEEEeCcccccccCCc-c-e--------eecccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 762 STLFEAGKIKVCVMSSSMCWEVPLT-A-H--------LATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 762 ~~~F~~g~~~VLVaT~~l~~Gvdip-~-~--------~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
+..|..+...|+|||++++||+||+ . . ++....|.|...+.|++|||||.|. +|.+..+++..+
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGd--pGsS~ffvSleD 712 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGD--PGESVFYVSLED 712 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCC--CcceEEEechhH
Confidence 9999999999999999999999999 2 2 2344566888999999999999996 899998888655
No 145
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.48 E-value=5.3e-14 Score=174.13 Aligned_cols=131 Identities=31% Similarity=0.426 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|.|..|..||.+|..|.++|++||-||++|+|+||++||+.+.++|||... ..+++.+|.||.|||||.|+|..|.+|
T Consensus 454 lLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~--r~L~~gEy~QmsGRAGRRGlD~~G~vI 531 (1041)
T COG4581 454 LLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGH--RWLSPGEYTQMSGRAGRRGLDVLGTVI 531 (1041)
T ss_pred cchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCce--eecChhHHHHhhhhhccccccccceEE
Confidence 578899999999999999999999999999999999999999999998765 569999999999999999999999999
Q ss_pred EEecCCc--HHHHHHh-hcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcce
Q 000849 81 IITGHSE--LQYYLSL-MNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYL 137 (1254)
Q Consensus 81 i~~~~~~--~~~~~~~-~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~ 137 (1254)
++..... ......+ .+.+.|+.|+|...+...+|-. .+...+.+...+..+|.
T Consensus 532 ~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~milnll----~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 532 VIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILNLL----RVEGLQTAEDLLERSFA 587 (1041)
T ss_pred EecCCCCCChHHHHHhhcCCCccchhheecchhHHHhhh----hhcccCcHHHHHHhhHH
Confidence 9965422 2222222 4556689999998888777755 34455566777787776
No 146
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.44 E-value=7.5e-14 Score=165.33 Aligned_cols=76 Identities=42% Similarity=0.698 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|.+..|.+||-+||.|++.||+||.||+.|||+|+++||+.|. ...+++..|.||+|||||.|||..|.++
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gD---------sLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGD---------SLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEecc---------ccccCchhHHhhhccccccccccccceE
Confidence 5688999999999999999999999999999999999999652 2468999999999999999999999999
Q ss_pred EEecC
Q 000849 81 IITGH 85 (1254)
Q Consensus 81 i~~~~ 85 (1254)
.|.=.
T Consensus 1043 FmgiP 1047 (1330)
T KOG0949|consen 1043 FMGIP 1047 (1330)
T ss_pred EEeCc
Confidence 98644
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.44 E-value=1.6e-11 Score=154.09 Aligned_cols=70 Identities=23% Similarity=0.222 Sum_probs=56.1
Q ss_pred HHhhcc-cCCChHHHHHHhhCC----c-----ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHH
Q 000849 445 LSRKLM-FARLPAKQRITAALP----N-----IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514 (1254)
Q Consensus 445 ~~~~~~-f~~~~~Q~~~~~~i~----~-----~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~ 514 (1254)
|...+| |+..+.|.+.++++. . +..+++.||||+|||++|++|++..... .++ ++||-+.|++|.+
T Consensus 17 l~~~~~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k--~vVIST~T~~LQe 92 (697)
T PRK11747 17 LQEQLPGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKK--KLVISTATVALQE 92 (697)
T ss_pred HHHhCCCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCC--eEEEEcCCHHHHH
Confidence 345666 888899988777772 2 4678999999999999999999765443 355 8999999999999
Q ss_pred HHHH
Q 000849 515 QRYC 518 (1254)
Q Consensus 515 q~~~ 518 (1254)
|+..
T Consensus 93 QL~~ 96 (697)
T PRK11747 93 QLVS 96 (697)
T ss_pred HHHh
Confidence 9863
No 148
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.43 E-value=4.7e-11 Score=144.63 Aligned_cols=61 Identities=25% Similarity=0.248 Sum_probs=50.0
Q ss_pred HHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHh
Q 000849 460 ITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERK 523 (1254)
Q Consensus 460 ~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~ 523 (1254)
+.+.+.+...+++.||||+|||++|++|++..+.. ..++ +++|++||++|+.|+++++...
T Consensus 9 i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~--rvlIstpT~~Lq~Ql~~~l~~l 69 (636)
T TIGR03117 9 CLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQ--KIAIAVPTLALMGQLWSELERL 69 (636)
T ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCc--eEEEECCcHHHHHHHHHHHHHH
Confidence 33444677889999999999999999999877664 2344 9999999999999999987753
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.42 E-value=1.1e-12 Score=138.58 Aligned_cols=151 Identities=23% Similarity=0.230 Sum_probs=95.1
Q ss_pred cCCChHHHHHHhhCC-------cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHh
Q 000849 451 FARLPAKQRITAALP-------NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERK 523 (1254)
Q Consensus 451 f~~~~~Q~~~~~~i~-------~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~ 523 (1254)
|+++++|.++++.+. .+..+++.+|||||||.++...+.+... ++++++|++.|+.|..+.+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 566777777777774 3578888899999999998765544322 7999999999999999999643
Q ss_pred hccccCcEEEEec--cc----------cccc---hhhcccCcEEEEcHhhHHHHHHhh---------hcccccceeeEEE
Q 000849 524 FGKELGMCVVELT--VE----------TAMD---LKLLEKGQIIISTPEKWDALSRRW---------KQRKYVQQVSLFI 579 (1254)
Q Consensus 524 ~~~~~~~~v~~~~--g~----------~~~~---~~~~~~~~Iiv~Tpe~l~~l~~~~---------~~~~~l~~v~liI 579 (1254)
.... ....... .. .... .......+++++|..+|....... .........++||
T Consensus 74 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 74 GSEK--YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp STTS--EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred hhhh--hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 3321 1111110 00 0000 112345699999999996655431 1123456789999
Q ss_pred ecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 580 IDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 580 iDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
+||+|++....+ +..++. .....+|+||||+.
T Consensus 152 ~DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred EehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 999998763111 222222 35788999999974
No 150
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.42 E-value=1e-12 Score=154.27 Aligned_cols=414 Identities=17% Similarity=0.156 Sum_probs=246.1
Q ss_pred HHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecc
Q 000849 458 QRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTV 537 (1254)
Q Consensus 458 ~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g 537 (1254)
.++++.+..+.++++.+.||+|||..+...+|..+...+.+....+.+..|++..+..+++++.+.-+...|-.|+.-.-
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVR 463 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccc
Confidence 45667778888899999999999999999999999886666666788999999999999999887655443333322110
Q ss_pred ccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEe
Q 000849 538 ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVAL 617 (1254)
Q Consensus 538 ~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~l 617 (1254)
- ...-.....-|.+||-|-+...... -+..+.++|+||+|... ..-..++..++.+.. +-+..++++|
T Consensus 464 f--~Sa~prpyg~i~fctvgvllr~~e~-----glrg~sh~i~deiherd----v~~dfll~~lr~m~~-ty~dl~v~lm 531 (1282)
T KOG0921|consen 464 F--DSATPRPYGSIMFCTVGVLLRMMEN-----GLRGISHVIIDEIHERD----VDTDFVLIVLREMIS-TYRDLRVVLM 531 (1282)
T ss_pred c--cccccccccceeeeccchhhhhhhh-----cccccccccchhhhhhc----cchHHHHHHHHhhhc-cchhhhhhhh
Confidence 0 0001112347999999887443322 36678999999999543 333333333333332 3568899999
Q ss_pred cCCCCChHHHHHhhcCCCCeeEe-------------------cCCCCcccccEEEE-eecc---------------CCCh
Q 000849 618 STSLANAKDLGEWIGASSHGVFN-------------------FPPGVRPVPLEIQI-QGVD---------------ITNF 662 (1254)
Q Consensus 618 SATl~~~~~l~~~l~~~~~~~~~-------------------~~~~~r~v~l~~~~-~~~~---------------~~~~ 662 (1254)
|||+ |.+.+..||+.-+..+.. +.++ ++.+..... .... ...+
T Consensus 532 satI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~-~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 532 SATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPS-EPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCC-CcCccchhhcccccCchhhhcccccccccChhh
Confidence 9999 788888888765422110 0000 000000000 0000 0000
Q ss_pred HH-HHHhhC--------HHHHHHHHhhh---hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHH
Q 000849 663 EA-RMKAMT--------KPTYTAIMQHA---KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHV 730 (1254)
Q Consensus 663 ~~-~~~~~~--------~~~~~~i~~~~---~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 730 (1254)
.. ....|. -.+.+++..++ .-.+-++||.+.......+...+..+-
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~---------------------- 667 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ---------------------- 667 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh----------------------
Confidence 00 000110 01222222221 224568888888877766665554321
Q ss_pred hhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCcc--eee--------ccc-------
Q 000849 731 SIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTA--HLA--------TGR------- 793 (1254)
Q Consensus 731 ~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip~--~~V--------~~~------- 793 (1254)
....+-.+.+...|+.+...++.+|.+....|..+++++|++++..+.+.+ .++ .+.
T Consensus 668 ------~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~ 741 (1282)
T KOG0921|consen 668 ------EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTH 741 (1282)
T ss_pred ------hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceee
Confidence 111222456888999999999999999999999999999999999998873 333 111
Q ss_pred ---ccCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHHhhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHH
Q 000849 794 ---KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVD 870 (1254)
Q Consensus 794 ---~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~ 870 (1254)
...|..+..||.||+||.. +|.|..+|..-..+..+.-....+- ...+++.... |..-...+...
T Consensus 742 ~Atvw~sktn~eqr~gr~grvR---~G~~f~lcs~arF~~l~~~~t~em~-r~plhemalT-----ikll~l~SI~~--- 809 (1282)
T KOG0921|consen 742 YATVWASKTNLEQRKGRAGRVR---PGFCFHLCSRARFEALEDHGTAEMF-RTPLHEIALT-----IKLLRLGSIGE--- 809 (1282)
T ss_pred eeeecccccchHhhcccCceec---ccccccccHHHHHHHHHhcCcHhhh-cCccHHHHhh-----HHHHHhhhHHH---
Confidence 1157788999999999977 7999999986544443332111000 0001111111 11111111111
Q ss_pred HHHHhcccccCCCcccCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHh
Q 000849 871 YLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSS 948 (1254)
Q Consensus 871 ~l~~tfr~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~ 948 (1254)
++. ...+-|.+ ..|..+-..|..+++.+..+ ..|++|+..++.++.|.-.+.+.-
T Consensus 810 fl~---kal~~~p~----------------dav~e~e~~l~~m~~ld~n~----elt~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 810 FLG---KALQPPPY----------------DAVIEAEAVLREMGALDAND----ELTPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred HHh---hccCCCch----------------hhccCchHHHHHhhhhhccC----cccchhhhhhhccCcccccceeee
Confidence 111 11122221 23445556677778876543 458999999999999988777654
No 151
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=1.2e-11 Score=151.24 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=90.8
Q ss_pred HhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccc
Q 000849 461 TAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA 540 (1254)
Q Consensus 461 ~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~ 540 (1254)
+-.+.-+.--|..+.||+|||+++.+|++-.... +. .|.+++|+.-||.+-++.+...+... |++|+.++++..
T Consensus 89 iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---G~--~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~~i~~~~~ 162 (913)
T PRK13103 89 IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---GK--GVHVVTVNDYLARRDANWMRPLYEFL-GLSVGIVTPFQP 162 (913)
T ss_pred HhhhHhccCccccccCCCCChHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEEEECCCCC
Confidence 3344334556778999999999999999866655 44 79999999999999999999877764 999999999876
Q ss_pred cch-hhcccCcEEEEcHhhH--HHHHHhhh---cccccceeeEEEeccccccc
Q 000849 541 MDL-KLLEKGQIIISTPEKW--DALSRRWK---QRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 541 ~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~v~liIiDEaH~l~ 587 (1254)
... +..-.++|+++|..-| |.+..+.. .......+.++||||+|.++
T Consensus 163 ~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 163 PEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 543 3334589999998875 32222211 12234788999999999765
No 152
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.40 E-value=1.8e-12 Score=166.87 Aligned_cols=144 Identities=19% Similarity=0.275 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|..+|+.|++|.++|||||++|++|||+|+.++||. |+ .|.++.+|+||+|||||.+.+ .+.++
T Consensus 324 ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~------~P~sv~~ylQRiGRaGR~~g~-~~~g~ 392 (876)
T PRK13767 324 LSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LG------SPKSVSRLLQRIGRAGHRLGE-VSKGR 392 (876)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eC------CCCCHHHHHHhcccCCCCCCC-CCcEE
Confidence 68899999999999999999999999999999999888882 44 467899999999999995432 34455
Q ss_pred EEecC-Cc-HHH--HHHh-h-cCCCCc--hhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCC
Q 000849 81 IITGH-SE-LQY--YLSL-M-NQQLPI--ESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSP 152 (1254)
Q Consensus 81 i~~~~-~~-~~~--~~~~-~-~~~~~i--~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~ 152 (1254)
+++.. ++ .+. +.+. . ...+++ ...-...+..|+.+.++.+ ..+.+++.+|++.||.|.++.
T Consensus 393 ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~---------- 461 (876)
T PRK13767 393 IIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRRAYPYRDLS---------- 461 (876)
T ss_pred EEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhccCCcccCC----------
Confidence 55433 33 221 1111 1 222232 2233457888999987775 679999999999999998863
Q ss_pred CcCchhHHHHHHHHHHHHHHHhhhc
Q 000849 153 EVLDITLGERITDLIHTAANVLDRN 177 (1254)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~L~~~ 177 (1254)
.+....+++.|...
T Consensus 462 -----------~~~~~~~l~~l~~~ 475 (876)
T PRK13767 462 -----------DEDFESVLRYLAGD 475 (876)
T ss_pred -----------HHHHHHHHHHHhcc
Confidence 23566778888765
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.40 E-value=1.3e-11 Score=152.04 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=56.9
Q ss_pred ccceeecCCCCHHHHHHHHHHH----------------------hc----CCceEEEeCcccccccCCcceeecccccCC
Q 000849 744 LGVGYLHEGLNKSDQEVVSTLF----------------------EA----GKIKVCVMSSSMCWEVPLTAHLATGRKMLI 797 (1254)
Q Consensus 744 ~~v~~~h~~l~~~~R~~v~~~F----------------------~~----g~~~VLVaT~~l~~Gvdip~~~V~~~~~~s 797 (1254)
..+..+|+..+..+|..+|+.. ++ +...|+|||++.+.|+|+..+.+ +..+.+
T Consensus 787 i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~-~~~~~~ 865 (1110)
T TIGR02562 787 IHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWA-IADPSS 865 (1110)
T ss_pred eeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCee-eeccCc
Confidence 3477889999888888887653 12 46789999999999999995444 345679
Q ss_pred HHHHHHhhcccCCCCCCCC
Q 000849 798 LTTLLQMMGHAGRPLLDNS 816 (1254)
Q Consensus 798 ~~~~~Qr~GRaGR~g~d~~ 816 (1254)
+..++|++||+.|.+....
T Consensus 866 ~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 866 MRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred HHHHHHHhhcccccccCCC
Confidence 9999999999999886543
No 154
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.36 E-value=7.7e-12 Score=125.47 Aligned_cols=140 Identities=31% Similarity=0.395 Sum_probs=98.2
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh---h
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK---L 545 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~ 545 (1254)
.+++.+|||+|||.++..++.+.... ...+ +++|++|++.++.|..+.+...... +..+..+.+....... .
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~--~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGG--QVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCC--CEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh
Confidence 35677999999999999888877665 2344 8999999999999999988875543 4666666665443322 2
Q ss_pred cccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCC
Q 000849 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSL 621 (1254)
Q Consensus 546 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl 621 (1254)
....+|+++|++.+........ ......+++|+||+|.+......... .. .........+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~-----~~-~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG-----LK-ILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH-----HH-HHhhCCccceEEEEeccC
Confidence 4567999999998855444321 23567899999999998853211110 01 111125678999999995
No 155
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.34 E-value=2.7e-12 Score=114.43 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=67.1
Q ss_pred HHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc--ceeecccccCCHHHHHHhhcccCCCC
Q 000849 740 ATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT--AHLATGRKMLILTTLLQMMGHAGRPL 812 (1254)
Q Consensus 740 ~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip--~~~V~~~~~~s~~~~~Qr~GRaGR~g 812 (1254)
+..+..+..+||++++.+|..+++.|++|..+|||||+++++|+|+| .++|.++.+.+..+|.|++||+||.|
T Consensus 4 ~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 4 EKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 34578899999999999999999999999999999999999999999 45558888999999999999999976
No 156
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.34 E-value=4.8e-12 Score=125.46 Aligned_cols=112 Identities=24% Similarity=0.274 Sum_probs=94.3
Q ss_pred HHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCC
Q 000849 674 YTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGL 753 (1254)
Q Consensus 674 ~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l 753 (1254)
...+.+....++++||||++...++.++..|.. ...++..+||++
T Consensus 18 ~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~ 62 (131)
T cd00079 18 LELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-----------------------------------PGIKVAALHGDG 62 (131)
T ss_pred HHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCcEEEEECCC
Confidence 344444434678999999999999999877743 134688999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeCcccccccCCc-c-eeecccccCCHHHHHHhhcccCCCCCCCCceEEEE
Q 000849 754 NKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-A-HLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVIL 822 (1254)
Q Consensus 754 ~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~-~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil 822 (1254)
+..+|..+.+.|.+|..+||++|+++++|+|+| + ++|..+.+.+..++.|++||+||.|. .|.++++
T Consensus 63 ~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~--~~~~~~~ 131 (131)
T cd00079 63 SQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ--KGTAILL 131 (131)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCC--CceEEeC
Confidence 999999999999999999999999999999999 4 45577778999999999999999996 7777653
No 157
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.33 E-value=7.8e-12 Score=163.07 Aligned_cols=130 Identities=17% Similarity=0.272 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|..||+.|++|.++|||||++|++|||+|+..+||. |+ .|.++.+|+||+|||||. .+..+.++
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~g------sP~sVas~LQRiGRAGR~-~gg~s~gl 379 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VA------TPLSVASGLQRIGRAGHQ-VGGVSKGL 379 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eC------CCCCHHHHHHHhCCCCCC-CCCccEEE
Confidence 68999999999999999999999999999999999888883 43 578999999999999996 67678888
Q ss_pred EEecCCc--HH---HHHHhhcC-CCCchh--hHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeec
Q 000849 81 IITGHSE--LQ---YYLSLMNQ-QLPIES--QFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRML 142 (1254)
Q Consensus 81 i~~~~~~--~~---~~~~~~~~-~~~i~s--~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~ 142 (1254)
++..+.. .+ ....++.. .+++.. +-...|..|+.+.++.+ --+.++.++.++.+|.|..+.
T Consensus 380 i~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~-~~~~d~l~~~vrra~pf~~L~ 448 (1490)
T PRK09751 380 FFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMD-ALQVDEWYSRVRRAAPWKDLP 448 (1490)
T ss_pred EEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcC-CCCHHHHHHHhhccCCcccCC
Confidence 7766522 11 11122222 223332 33447888899988865 466899999999999998763
No 158
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.33 E-value=3.4e-11 Score=152.77 Aligned_cols=70 Identities=23% Similarity=0.218 Sum_probs=54.5
Q ss_pred cccCCChHHHHHHhhC----CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 449 LMFARLPAKQRITAAL----PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 449 ~~f~~~~~Q~~~~~~i----~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
.+|++.+.|++.++.+ .+...+++.||||+|||+.|+.|++..... .+. +++|.++|+.|..|..++...
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~--~~~--~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE--EGK--KVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH--cCC--cEEEECCCHHHHHHHHHhhcc
Confidence 3466666776666555 455668899999999999999999977665 234 899999999999998876554
No 159
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.31 E-value=1.6e-10 Score=134.81 Aligned_cols=323 Identities=19% Similarity=0.162 Sum_probs=191.0
Q ss_pred CCcChHHHHHHHHH---hcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-
Q 000849 420 KLFNPIQTQVFAVL---YNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA- 495 (1254)
Q Consensus 420 ~~~~~~Q~~~~~~~---~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~- 495 (1254)
..++++|.+-++.+ ++.+-|.++. -.-|-|||+..+ +++..+...
T Consensus 166 g~lr~YQveGlnWLi~l~engingILa------------------------------DEMGLGKTlQtI-s~l~yl~~~~ 214 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILA------------------------------DEMGLGKTLQTI-SLLGYLKGRK 214 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEee------------------------------hhcccchHHHHH-HHHHHHHHhc
Confidence 36888998888775 3444456666 899999998763 333334332
Q ss_pred cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh----c--ccCcEEEEcHhhHHHHHHhhhcc
Q 000849 496 SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL----L--EKGQIIISTPEKWDALSRRWKQR 569 (1254)
Q Consensus 496 ~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~--~~~~Iiv~Tpe~l~~l~~~~~~~ 569 (1254)
+..| .-+|++|.-.|.+- .+++++ |.+ ++++..+.|+....... . ...+|+|||+|....--.-
T Consensus 215 ~~~G--PfLVi~P~StL~NW-~~Ef~r-f~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~---- 284 (971)
T KOG0385|consen 215 GIPG--PFLVIAPKSTLDNW-MNEFKR-FTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF---- 284 (971)
T ss_pred CCCC--CeEEEeeHhhHHHH-HHHHHH-hCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH----
Confidence 2344 67899999888654 566665 443 68899999987543221 1 2459999999987221111
Q ss_pred cccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCC-CCC-------------------hHHHHH
Q 000849 570 KYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTS-LAN-------------------AKDLGE 629 (1254)
Q Consensus 570 ~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSAT-l~~-------------------~~~l~~ 629 (1254)
..--+.+++||||+|++-.+.. ++....+.....-|+ +++.| +.| .+++..
T Consensus 285 lk~~~W~ylvIDEaHRiKN~~s--------~L~~~lr~f~~~nrL-LlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~s 355 (971)
T KOG0385|consen 285 LKKFNWRYLVIDEAHRIKNEKS--------KLSKILREFKTDNRL-LLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDS 355 (971)
T ss_pred HhcCCceEEEechhhhhcchhh--------HHHHHHHHhccccee-EeeCCcccccHHHHHHHHHhhchhhccCHHHHHH
Confidence 1122578999999999985331 122222222445554 45555 332 366777
Q ss_pred hhcCCCC-----eeEecCCCCc---------------ccccEEEEe-ecc-------------------CCCh--HHHHH
Q 000849 630 WIGASSH-----GVFNFPPGVR---------------PVPLEIQIQ-GVD-------------------ITNF--EARMK 667 (1254)
Q Consensus 630 ~l~~~~~-----~~~~~~~~~r---------------~v~l~~~~~-~~~-------------------~~~~--~~~~~ 667 (1254)
|+..... .+.....-.+ |.+-++.+. +.. .... ..++.
T Consensus 356 wF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~ 435 (971)
T KOG0385|consen 356 WFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQ 435 (971)
T ss_pred HHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHH
Confidence 8764210 0000000000 111111111 000 0000 00000
Q ss_pred hh-C---H------------------------------HHHHHHH-hhhhcCCCeEEEecChhhHHHHHHHHHHHhhccC
Q 000849 668 AM-T---K------------------------------PTYTAIM-QHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDS 712 (1254)
Q Consensus 668 ~~-~---~------------------------------~~~~~i~-~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~ 712 (1254)
.+ . + .+.+.++ ...+.|.+||||..=. .+-..|..+|.
T Consensus 436 NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt----~mLDILeDyc~--- 508 (971)
T KOG0385|consen 436 NIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMT----RMLDILEDYCM--- 508 (971)
T ss_pred HHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHH----HHHHHHHHHHH---
Confidence 00 0 0 0122222 2225677788875321 12222222221
Q ss_pred cccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcC---CceEEEeCcccccccCCc-ce
Q 000849 713 DQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAG---KIKVCVMSSSMCWEVPLT-AH 788 (1254)
Q Consensus 713 ~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g---~~~VLVaT~~l~~Gvdip-~~ 788 (1254)
.-++...-+.|+++.++|...++.|... +.-.|++|.+.+.|||+- |+
T Consensus 509 ----------------------------~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aAD 560 (971)
T KOG0385|consen 509 ----------------------------LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAAD 560 (971)
T ss_pred ----------------------------hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccccc
Confidence 1256677889999999999999999754 456788999999999999 66
Q ss_pred ee-cccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 789 LA-TGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 789 ~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
+| .++.-.++..=+|.+-||-|-|+..+-.+|.+++++.
T Consensus 561 tVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 561 TVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred EEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 66 7777789999999999999999988899999988774
No 160
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.29 E-value=4.2e-10 Score=136.24 Aligned_cols=375 Identities=15% Similarity=0.093 Sum_probs=205.9
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhC-CcceeeeeeccCCCchHHHHHHHHHHHHHhhcC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAAL-PNIILVLQLAPTGSGKTICAEFAILRNHQRASE 497 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i-~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~ 497 (1254)
...+.|+|.+.+.-++.. +... .. ....-.|+.-..|+|||+...-.+...+.+ .+
T Consensus 236 ~~~LrPHQ~EG~~FL~kn---l~g~-------------------~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P 292 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKN---LAGL-------------------IRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FP 292 (776)
T ss_pred hhhcCchHHHHHHHHHhh---hhcc-------------------cccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-Cc
Confidence 347889999999988752 2211 00 122334444667999999987777766766 55
Q ss_pred C-----CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch---h-------hcccCcEEEEcHhhHHHH
Q 000849 498 T-----GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL---K-------LLEKGQIIISTPEKWDAL 562 (1254)
Q Consensus 498 ~-----~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~---~-------~~~~~~Iiv~Tpe~l~~l 562 (1254)
. . +.+||+|. .|+.-..++|.++.+.. .+....+.|...... + ..-...|.+.+.|.+...
T Consensus 293 ~~~~~~~--k~lVV~P~-sLv~nWkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~ 368 (776)
T KOG0390|consen 293 QAKPLIN--KPLVVAPS-SLVNNWKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDY 368 (776)
T ss_pred Ccccccc--ccEEEccH-HHHHHHHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHH
Confidence 5 5 89999996 56666677777666542 345555555544310 0 011236788888887544
Q ss_pred HHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC--ChHHHHHhhcCCCCeeEe
Q 000849 563 SRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA--NAKDLGEWIGASSHGVFN 640 (1254)
Q Consensus 563 ~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~--~~~~l~~~l~~~~~~~~~ 640 (1254)
.+. .....++++|+||.|.+-...+..+. .+.+.. -.|.|++|.|+- |..++-+.++.-..+++.
T Consensus 369 ~~~----il~~~~glLVcDEGHrlkN~~s~~~k--------aL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lg 435 (776)
T KOG0390|consen 369 CRK----ILLIRPGLLVCDEGHRLKNSDSLTLK--------ALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLG 435 (776)
T ss_pred HHH----HhcCCCCeEEECCCCCccchhhHHHH--------HHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhcc
Confidence 443 34668999999999988753322221 122223 345578888863 233333333322222211
Q ss_pred cCCCCcccccEEEEeecc--CC----ChHHHHHhhCHHHH--------HHHHhhhhcCCCeEEEecChhhHHHHHHHHHH
Q 000849 641 FPPGVRPVPLEIQIQGVD--IT----NFEARMKAMTKPTY--------TAIMQHAKNEKPALVFVPSRKYARLTAVDLMI 706 (1254)
Q Consensus 641 ~~~~~r~v~l~~~~~~~~--~~----~~~~~~~~~~~~~~--------~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~ 706 (1254)
-..+++...-.....+.+ .. ....+...+..-+- +.+.+++....-.+|||+.-..-..+...|..
T Consensus 436 s~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~ 515 (776)
T KOG0390|consen 436 SISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLD 515 (776)
T ss_pred chHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHH
Confidence 111111100000000000 00 00111111111000 12223334444578888876555555554444
Q ss_pred Hh----------------hcc-Cccc-----------ccccc------c-----Chh---------chhhHHhhc-----
Q 000849 707 YS----------------CKD-SDQK-----------SAFLL------C-----SAK---------EVEPHVSII----- 733 (1254)
Q Consensus 707 ~~----------------~~~-~~~~-----------~~~~~------~-----~~~---------~l~~~~~~~----- 733 (1254)
.. ..- ..+. ..+.. . ... .+...+..+
T Consensus 516 ~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~ 595 (776)
T KOG0390|consen 516 SMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLL 595 (776)
T ss_pred HHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcc
Confidence 20 000 0000 00000 0 000 011111000
Q ss_pred ------C--------hHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCc--e-EEEeCcccccccCCc--ceeecccc
Q 000849 734 ------Q--------EEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKI--K-VCVMSSSMCWEVPLT--AHLATGRK 794 (1254)
Q Consensus 734 ------~--------~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~--~-VLVaT~~l~~Gvdip--~~~V~~~~ 794 (1254)
. -..+.+..++.+..+||.|+..+|+.+.+.|.+..- . .|.+|.+-+.|+|+= .++|.++.
T Consensus 596 ~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~ 675 (776)
T KOG0390|consen 596 VKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP 675 (776)
T ss_pred eEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC
Confidence 0 133344448889999999999999999999976432 3 455678889999998 57789999
Q ss_pred cCCHHHHHHhhcccCCCCCCCCceEEEEccCC--cHHHHHH
Q 000849 795 MLILTTLLQMMGHAGRPLLDNSEKCVILCHAP--HKEYYKK 833 (1254)
Q Consensus 795 ~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~--~~~~~~~ 833 (1254)
..+++.=.|.++||-|+|+.....+|.+.... +.+.|++
T Consensus 676 dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qr 716 (776)
T KOG0390|consen 676 DWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQR 716 (776)
T ss_pred CCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHH
Confidence 99999999999999999997777777665544 3444544
No 161
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=8.8e-10 Score=139.85 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=57.9
Q ss_pred hcccCC-ChHHHHHHhhC----CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 448 KLMFAR-LPAKQRITAAL----PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 448 ~~~f~~-~~~Q~~~~~~i----~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
-+||++ ++.|++.++.+ ......++.||||+|||++.+.+.+...... +...+++|.+.|..=..|..+++++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~--~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK--PEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc--cccccEEEEcccchHHHHHHHHHHh
Confidence 467776 77787776666 5667788899999999999999999876542 2224899999999988888888886
No 162
>COG4889 Predicted helicase [General function prediction only]
Probab=99.26 E-value=1e-11 Score=145.40 Aligned_cols=302 Identities=15% Similarity=0.196 Sum_probs=157.7
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccc-----------
Q 000849 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD----------- 542 (1254)
Q Consensus 474 apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~----------- 542 (1254)
+..|+|||..++- |.+.+.. . ++++++|+.+|..|..+.|...-. +.++...+++|....
T Consensus 187 MAcGTGKTfTsLk-isEala~----~--~iL~LvPSIsLLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl 257 (1518)
T COG4889 187 MACGTGKTFTSLK-ISEALAA----A--RILFLVPSISLLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDL 257 (1518)
T ss_pred EecCCCccchHHH-HHHHHhh----h--heEeecchHHHHHHHHHHHhhccC--ccceeEEEecCccccccccccccccC
Confidence 6789999988753 3333332 3 899999999999999999987433 345554444443211
Q ss_pred -------h-------hhccc---CcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC--CCccHHHHHHHHHHH
Q 000849 543 -------L-------KLLEK---GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVIVARMRY 603 (1254)
Q Consensus 543 -------~-------~~~~~---~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~--~~g~~~e~~~~~l~~ 603 (1254)
. ...++ --|+++|++.+..+-.. +..-+..+++||+||||+-.+ ..|.. ...+.++..
T Consensus 258 ~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDliicDEAHRTtGa~~a~dd-~saFt~vHs 334 (1518)
T COG4889 258 PIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDLIICDEAHRTTGATLAGDD-KSAFTRVHS 334 (1518)
T ss_pred CCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccEEEecchhccccceecccC-cccceeecC
Confidence 0 01111 26899999988555433 344588999999999997653 11110 011111110
Q ss_pred HHhhcCCCcEEEEecCCCCChHH-HHHhhcCCCCeeEe------cCCCCcc------------cccEEEEeeccCCChHH
Q 000849 604 IASQVENKIRIVALSTSLANAKD-LGEWIGASSHGVFN------FPPGVRP------------VPLEIQIQGVDITNFEA 664 (1254)
Q Consensus 604 ~~~~~~~~~rii~lSATl~~~~~-l~~~l~~~~~~~~~------~~~~~r~------------v~l~~~~~~~~~~~~~~ 664 (1254)
.+.-+..+.+.|+||+.-..+ ...--......+.. |.+.+.. ....+.+..++......
T Consensus 335 --~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~ 412 (1518)
T COG4889 335 --DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAG 412 (1518)
T ss_pred --cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhh
Confidence 000023445778888632111 00000000000000 1111000 00111111111111111
Q ss_pred HHHhhC---------------HHHHHHHHhhh-------------hcCCCeEEEecChhhHHHHHHHHHHHhhccCcccc
Q 000849 665 RMKAMT---------------KPTYTAIMQHA-------------KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKS 716 (1254)
Q Consensus 665 ~~~~~~---------------~~~~~~i~~~~-------------~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~ 716 (1254)
.+.... --++..+.+.- .+..++|-||.+.+....++..+-...
T Consensus 413 ~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vv-------- 484 (1518)
T COG4889 413 VLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVV-------- 484 (1518)
T ss_pred hhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHH--------
Confidence 110000 01111121110 112346667777666666665442211
Q ss_pred cccccChhchhhHHhhcChHHHHHH---hhccceeecCCCCHHHHHHHHHH---HhcCCceEEEeCcccccccCCc--ce
Q 000849 717 AFLLCSAKEVEPHVSIIQEEMLRAT---LRLGVGYLHEGLNKSDQEVVSTL---FEAGKIKVCVMSSSMCWEVPLT--AH 788 (1254)
Q Consensus 717 ~~~~~~~~~l~~~~~~~~~~~L~~~---l~~~v~~~h~~l~~~~R~~v~~~---F~~g~~~VLVaT~~l~~Gvdip--~~ 788 (1254)
+.+ +.++++- +...+....|.|...+|...+.. |...+++||--...|++|||+| ..
T Consensus 485 ----------e~Y-----~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDs 549 (1518)
T COG4889 485 ----------EAY-----DEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDS 549 (1518)
T ss_pred ----------HHH-----HHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccce
Confidence 011 1122221 23344445688999999555543 4567899999999999999999 56
Q ss_pred eecccccCCHHHHHHhhcccCCCC
Q 000849 789 LATGRKMLILTTLLQMMGHAGRPL 812 (1254)
Q Consensus 789 ~V~~~~~~s~~~~~Qr~GRaGR~g 812 (1254)
+|.++...|..+++|.+||+-|..
T Consensus 550 ViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 550 VIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred EEEecCchhHHHHHHHHHHHHHhC
Confidence 666666679999999999999965
No 163
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.18 E-value=4.2e-09 Score=128.83 Aligned_cols=132 Identities=17% Similarity=0.044 Sum_probs=91.1
Q ss_pred hcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
.+...+.+.|-=.. +--+.-.|+.+.||.|||+++.+|++-.... ++ .|-+++++..||.+-++.+...+.-
T Consensus 72 ~lG~r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~--~VhVvT~NdyLA~RD~e~m~pvy~~- 143 (870)
T CHL00122 72 TLGLRHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT---GK--GVHIVTVNDYLAKRDQEWMGQIYRF- 143 (870)
T ss_pred HhCCCCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc---CC--ceEEEeCCHHHHHHHHHHHHHHHHH-
Confidence 44444445444333 3234457778999999999999998643333 44 7899999999999988888876655
Q ss_pred cCcEEEEeccccccchh-hcccCcEEEEcHhhH-HHHHHh-hh---cccccceeeEEEeccccccc
Q 000849 528 LGMCVVELTVETAMDLK-LLEKGQIIISTPEKW-DALSRR-WK---QRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~-~~---~~~~l~~v~liIiDEaH~l~ 587 (1254)
+|++|+...++.+...+ ..=.+||+++|..-| -+.+|. .. .......+.+.||||+|.++
T Consensus 144 LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred cCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 59999999887765543 334579999999865 223332 11 11235668899999999664
No 164
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=2e-09 Score=130.63 Aligned_cols=132 Identities=19% Similarity=0.090 Sum_probs=88.0
Q ss_pred hcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
.+...+.+.|-=.--.+. .--|....||-|||+++.+|++-.... ++ .|-+++..--||..=++.+...+.-
T Consensus 74 ~lG~r~ydVQliGglvLh--~G~IAEMkTGEGKTLvAtLpayLnAL~---Gk--gVhVVTvNdYLA~RDae~mg~vy~f- 145 (925)
T PRK12903 74 VLGKRPYDVQIIGGIILD--LGSVAEMKTGEGKTITSIAPVYLNALT---GK--GVIVSTVNEYLAERDAEEMGKVFNF- 145 (925)
T ss_pred HhCCCcCchHHHHHHHHh--cCCeeeecCCCCccHHHHHHHHHHHhc---CC--ceEEEecchhhhhhhHHHHHHHHHH-
Confidence 344445555544333333 335788999999999999998654444 44 5777788888887766666665544
Q ss_pred cCcEEEEeccccccch-hhcccCcEEEEcHhhH-HHHHHhhh----cccccceeeEEEeccccccc
Q 000849 528 LGMCVVELTVETAMDL-KLLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~v~liIiDEaH~l~ 587 (1254)
+|++|+....+..... +..-.+||.++|..-| .+.+|... .......+.+.||||+|.++
T Consensus 146 LGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 146 LGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred hCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 5999999887766543 3334679999999886 33444321 12235678899999999665
No 165
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.15 E-value=6.1e-11 Score=148.33 Aligned_cols=84 Identities=19% Similarity=0.284 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|..+++.|++|.++|||||.+|+||||+|..++|| +|+ .|-++.+|.|++|||||.|.. |.++
T Consensus 714 Ls~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VI----Hyd------lPkSiEsYyQriGRAGRDG~~--g~cI 781 (1195)
T PLN03137 714 MDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----HHS------LPKSIEGYHQECGRAGRDGQR--SSCV 781 (1195)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEE----EcC------CCCCHHHHHhhhcccCCCCCC--ceEE
Confidence 6889999999999999999999999999999999999999 576 677899999999999999987 9999
Q ss_pred EEecCCcHHHHHHhhc
Q 000849 81 IITGHSELQYYLSLMN 96 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~ 96 (1254)
++....+...+..++.
T Consensus 782 Llys~~D~~~~~~lI~ 797 (1195)
T PLN03137 782 LYYSYSDYIRVKHMIS 797 (1195)
T ss_pred EEecHHHHHHHHHHHh
Confidence 9988777666666554
No 166
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.1e-10 Score=141.39 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+++.|++|.++|||||++|++|||+|+.++|| +|+ .|.++.+|.||+|||||.|.. |.++
T Consensus 260 l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI----~~~------~P~s~~~y~Qr~GRaGR~G~~--~~~~ 327 (470)
T TIGR00614 260 LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI----HYS------LPKSMESYYQESGRAGRDGLP--SECH 327 (470)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE----EeC------CCCCHHHHHhhhcCcCCCCCC--ceEE
Confidence 6789999999999999999999999999999999999999 565 467899999999999999987 9999
Q ss_pred EEecCCcHHHHHHhhcC
Q 000849 81 IITGHSELQYYLSLMNQ 97 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~ 97 (1254)
++....+......++..
T Consensus 328 ~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 328 LFYAPADINRLRRLLME 344 (470)
T ss_pred EEechhHHHHHHHHHhc
Confidence 99988877766666543
No 167
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=1.4e-08 Score=123.94 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=91.6
Q ss_pred cccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcccc
Q 000849 449 LMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528 (1254)
Q Consensus 449 ~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~ 528 (1254)
+...+.+.| ++-.+--+.--|..+.||-|||+++.+|++-.... ++ .|-+|++..-||..=++.+...+.- +
T Consensus 82 lG~r~ydVQ--liGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~---Gk--gVhVVTvNdYLA~RDae~m~~vy~~-L 153 (939)
T PRK12902 82 LGMRHFDVQ--LIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT---GK--GVHVVTVNDYLARRDAEWMGQVHRF-L 153 (939)
T ss_pred hCCCcchhH--HHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc---CC--CeEEEeCCHHHHHhHHHHHHHHHHH-h
Confidence 333444444 33333335556788999999999999998755544 44 6889999999999888877775554 5
Q ss_pred CcEEEEeccccccchh-hcccCcEEEEcHhhH--HHHHHhhh---cccccceeeEEEeccccccc
Q 000849 529 GMCVVELTVETAMDLK-LLEKGQIIISTPEKW--DALSRRWK---QRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 529 ~~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~v~liIiDEaH~l~ 587 (1254)
|++|+...++.....+ ..-.+||+++|+..| |.+..+.. .......+.+.||||+|.++
T Consensus 154 GLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999999887765533 334679999999987 33322221 12245678899999999664
No 168
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.09 E-value=3.4e-10 Score=134.07 Aligned_cols=88 Identities=25% Similarity=0.441 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+++.|..+.++|+|||.+|+||||.|..+.|| ||| .|-|+++|.|.+|||||.|.- .+++
T Consensus 264 l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi----H~~------lP~s~EsYyQE~GRAGRDG~~--a~ai 331 (590)
T COG0514 264 LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI----HYD------LPGSIESYYQETGRAGRDGLP--AEAI 331 (590)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE----Eec------CCCCHHHHHHHHhhccCCCCc--ceEE
Confidence 6889999999999999999999999999999999999999 787 678999999999999999987 8999
Q ss_pred EEecCCcHHHHHHhhcCCCC
Q 000849 81 IITGHSELQYYLSLMNQQLP 100 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~ 100 (1254)
++....+......++....|
T Consensus 332 ll~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 332 LLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred EeeccccHHHHHHHHHhhcc
Confidence 99888776644444555444
No 169
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.08 E-value=3.9e-10 Score=140.35 Aligned_cols=86 Identities=19% Similarity=0.365 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+++.|++|.++|||||+++++|||+|..++|| +|| .|.+..+|.||+|||||.|.+ |.++
T Consensus 270 l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI----~~d------~P~s~~~y~Qr~GRaGR~G~~--~~~i 337 (607)
T PRK11057 270 LDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV----HFD------IPRNIESYYQETGRAGRDGLP--AEAM 337 (607)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE----EeC------CCCCHHHHHHHhhhccCCCCC--ceEE
Confidence 6789999999999999999999999999999999999999 576 567899999999999999987 9999
Q ss_pred EEecCCcHHHHHHhhcCC
Q 000849 81 IITGHSELQYYLSLMNQQ 98 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~ 98 (1254)
++.+..+...+..++.+.
T Consensus 338 ll~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 338 LFYDPADMAWLRRCLEEK 355 (607)
T ss_pred EEeCHHHHHHHHHHHhcC
Confidence 999888877777766543
No 170
>PTZ00424 helicase 45; Provisional
Probab=99.08 E-value=9.5e-11 Score=140.23 Aligned_cols=82 Identities=27% Similarity=0.473 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+++.|++|.++|||||+++++|||+|..++|| .|| .+.+..+|.||+|||||.|.+ |.++
T Consensus 301 ~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI----~~~------~p~s~~~y~qr~GRagR~g~~--G~~i 368 (401)
T PTZ00424 301 MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI----NYD------LPASPENYIHRIGRSGRFGRK--GVAI 368 (401)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE----EEC------CCCCHHHEeecccccccCCCC--ceEE
Confidence 6789999999999999999999999999999999999998 455 467899999999999999876 9999
Q ss_pred EEecCCcHHHHHHh
Q 000849 81 IITGHSELQYYLSL 94 (1254)
Q Consensus 81 i~~~~~~~~~~~~~ 94 (1254)
++++.++.+.+..+
T Consensus 369 ~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 369 NFVTPDDIEQLKEI 382 (401)
T ss_pred EEEcHHHHHHHHHH
Confidence 99988776655543
No 171
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.07 E-value=1.3e-08 Score=122.93 Aligned_cols=299 Identities=14% Similarity=0.110 Sum_probs=164.5
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhc
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLL 546 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 546 (1254)
..+.++.||.|||||.+..-++-..+. .++. ++++++.+++|+.+...+++..- ..|.....-.++.....
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~--~VLvVShRrSL~~sL~~rf~~~~--l~gFv~Y~d~~~~~i~~--- 119 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALK--NPDK--SVLVVSHRRSLTKSLAERFKKAG--LSGFVNYLDSDDYIIDG--- 119 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhcc--CCCC--eEEEEEhHHHHHHHHHHHHhhcC--CCcceeeeccccccccc---
Confidence 345778899999999876544332222 2455 99999999999999999887521 11222221111111111
Q ss_pred ccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCC-Ccc---HHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 547 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGP---VLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 547 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~-~g~---~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
...+-+++..+.+ .|. ....+.++++|||||+-..... ..+ ..+...+.++.+. ....++|++-|++.
T Consensus 120 ~~~~rLivqIdSL---~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI---~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 RPYDRLIVQIDSL---HRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI---RNAKTVIVMDADLN 191 (824)
T ss_pred cccCeEEEEehhh---hhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH---HhCCeEEEecCCCC
Confidence 1235556665554 333 1234778999999999755431 111 2233344444444 35678999999996
Q ss_pred Ch-HHHHHhhc-CCCCee-Eec--CC--CCcccccEEEE---------e-------ec-----cCCChHHHHHhh-CHHH
Q 000849 623 NA-KDLGEWIG-ASSHGV-FNF--PP--GVRPVPLEIQI---------Q-------GV-----DITNFEARMKAM-TKPT 673 (1254)
Q Consensus 623 ~~-~~l~~~l~-~~~~~~-~~~--~~--~~r~v~l~~~~---------~-------~~-----~~~~~~~~~~~~-~~~~ 673 (1254)
+. -++.+-+. .....+ .+- .+ +.|...+--.+ . .. ............ ...-
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 54 23333332 222111 110 00 01111000000 0 00 000000000001 1123
Q ss_pred HHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCC
Q 000849 674 YTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGL 753 (1254)
Q Consensus 674 ~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l 753 (1254)
+..+...+..++.+-||++|...++.+++..... ...|..++|.-
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~-----------------------------------~~~Vl~l~s~~ 316 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARF-----------------------------------TKKVLVLNSTD 316 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhc-----------------------------------CCeEEEEcCCC
Confidence 4555566688999999999998888776544321 33566676655
Q ss_pred CHHHHHHHHHHHhcCCceEEEeCcccccccCCc---ceee-ccccc----CCHHHHHHhhcccCCCCCCCCceEEEEccC
Q 000849 754 NKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT---AHLA-TGRKM----LILTTLLQMMGHAGRPLLDNSEKCVILCHA 825 (1254)
Q Consensus 754 ~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip---~~~V-~~~~~----~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~ 825 (1254)
+.. .++. =++.+|++=|+++..|+++. .|.+ -+-.+ .+..+..||+||+-... ..+.++.++.
T Consensus 317 ~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~---~~ei~v~~d~ 387 (824)
T PF02399_consen 317 KLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL---DNEIYVYIDA 387 (824)
T ss_pred Ccc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc---cCeEEEEEec
Confidence 544 2322 35689999999999999998 2322 11111 46678999999997766 4566666654
Q ss_pred C
Q 000849 826 P 826 (1254)
Q Consensus 826 ~ 826 (1254)
.
T Consensus 388 ~ 388 (824)
T PF02399_consen 388 S 388 (824)
T ss_pred c
Confidence 3
No 172
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.05 E-value=2.8e-10 Score=143.72 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|+.+|+.|++|.+++||||++|++|||+|...+|| .|+ .|-++.+|+||+|||||.|.+ |.++
T Consensus 313 ~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI----~~~------~P~s~~~y~qRiGRaGR~G~~--g~ai 380 (742)
T TIGR03817 313 YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV----IAG------FPGTRASLWQQAGRAGRRGQG--ALVV 380 (742)
T ss_pred CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE----EeC------CCCCHHHHHHhccccCCCCCC--cEEE
Confidence 5789999999999999999999999999999999988777 344 567899999999999999987 9999
Q ss_pred EEecCCcHHH
Q 000849 81 IITGHSELQY 90 (1254)
Q Consensus 81 i~~~~~~~~~ 90 (1254)
+++.++..+.
T Consensus 381 ~v~~~~~~d~ 390 (742)
T TIGR03817 381 LVARDDPLDT 390 (742)
T ss_pred EEeCCChHHH
Confidence 9987654443
No 173
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.05 E-value=2.6e-10 Score=139.56 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+++.|++|.++|||||+++++|||+|..+.|| .|| .|.++.+|.||+|||||.|.. |.++
T Consensus 402 ~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI----~~d------~P~s~~~yihRiGRaGR~g~~--G~ai 469 (518)
T PLN00206 402 KSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVI----IFD------MPNTIKEYIHQIGRASRMGEK--GTAI 469 (518)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEE----EeC------CCCCHHHHHHhccccccCCCC--eEEE
Confidence 5789999999999999999999999999999999998888 466 467899999999999999865 9999
Q ss_pred EEecCCcHHHHH
Q 000849 81 IITGHSELQYYL 92 (1254)
Q Consensus 81 i~~~~~~~~~~~ 92 (1254)
++.+.++...+.
T Consensus 470 ~f~~~~~~~~~~ 481 (518)
T PLN00206 470 VFVNEEDRNLFP 481 (518)
T ss_pred EEEchhHHHHHH
Confidence 998876654443
No 174
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.05 E-value=2.3e-10 Score=101.85 Aligned_cols=62 Identities=35% Similarity=0.613 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCC
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~ 72 (1254)
++.++|..+.+.|++|..+|||||..+++|||+|..++|| .|+ .+.+..+|.|++|||||.|
T Consensus 17 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi----~~~------~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 17 MSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVI----FYD------PPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEE----ESS------SESSHHHHHHHHTTSSTTT
T ss_pred CCHHHHHHHHHHhhccCceEEEeecccccccccccccccc----ccc------cCCCHHHHHHHhhcCCCCC
Confidence 4678999999999999999999999999999999988888 455 3688999999999999986
No 175
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.05 E-value=1.4e-08 Score=113.24 Aligned_cols=354 Identities=17% Similarity=0.170 Sum_probs=183.7
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
+..+-|+|.+-+...++.+..+++. -.-|-|||+.+ ++|...... .
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llA------------------------------DeMGLGKTiQA-laIA~yyra---E 241 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLA------------------------------DEMGLGKTIQA-LAIARYYRA---E 241 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEe------------------------------cccccchHHHH-HHHHHHHhh---c
Confidence 4567788988888887766667777 89999999988 455544444 4
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEE
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 578 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~li 578 (1254)
. ..++++|..- -....+.+...++.... +..+.+..+.-........|.|.+++.+..+-.... -..++++
T Consensus 242 w--plliVcPAsv-rftWa~al~r~lps~~p--i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vv 312 (689)
T KOG1000|consen 242 W--PLLIVCPASV-RFTWAKALNRFLPSIHP--IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVV 312 (689)
T ss_pred C--cEEEEecHHH-hHHHHHHHHHhcccccc--eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEE
Confidence 4 6899999743 34445556665555433 333333333222222345899999998855443322 2358999
Q ss_pred EecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC--ChHHHHHhhcCCCCeeE----ecC---CCCcccc
Q 000849 579 IIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA--NAKDLGEWIGASSHGVF----NFP---PGVRPVP 649 (1254)
Q Consensus 579 IiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~--~~~~l~~~l~~~~~~~~----~~~---~~~r~v~ 649 (1254)
|+||.|++-+.+......++..++ .-.++|++|.|+. .+.++-.-+..-...+| .|. .+.+.++
T Consensus 313 I~DEsH~Lk~sktkr~Ka~~dllk-------~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr 385 (689)
T KOG1000|consen 313 IFDESHMLKDSKTKRTKAATDLLK-------VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVR 385 (689)
T ss_pred EEechhhhhccchhhhhhhhhHHH-------HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccc
Confidence 999999998744333333333332 3467899999975 33322222111111110 111 0112222
Q ss_pred cEEEEeeccCCC---hHHHHHhhCHHHHHHHHhhhhcCCCeEEEecC-hhhHHHH------HH-----------------
Q 000849 650 LEIQIQGVDITN---FEARMKAMTKPTYTAIMQHAKNEKPALVFVPS-RKYARLT------AV----------------- 702 (1254)
Q Consensus 650 l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s-~~~~~~l------a~----------------- 702 (1254)
.-..+.+..... ..-....|.+.+...++..+.+..+.+|++.+ +..+..- ++
T Consensus 386 ~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~ 465 (689)
T KOG1000|consen 386 FCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLF 465 (689)
T ss_pred eeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHH
Confidence 222222221110 00111233344444444444444444444332 2111000 00
Q ss_pred ----------HHHHHhhc-----cCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHHhc
Q 000849 703 ----------DLMIYSCK-----DSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEA 767 (1254)
Q Consensus 703 ----------~L~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~ 767 (1254)
..++++.. +..+..-.+|+-...+ ++.++... .--+.|..-+.|..+..+|...-+.|..
T Consensus 466 y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~v---Ld~Iq~~~--~~r~vg~IRIDGst~s~~R~ll~qsFQ~ 540 (689)
T KOG1000|consen 466 YSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIV---LDTIQVEV--NKRKVGSIRIDGSTPSHRRTLLCQSFQT 540 (689)
T ss_pred HHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHH---HHHHHHHH--HHcCCCeEEecCCCCchhHHHHHHHhcc
Confidence 01111111 1111110112211111 11111000 0013455567899999999999999976
Q ss_pred C-CceEE-EeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 768 G-KIKVC-VMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 768 g-~~~VL-VaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
. +++|- ++-.+++.|+++. +.+| ....+.++.-++|.--|+-|.|+.+.-.++.++....
T Consensus 541 seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT 604 (689)
T KOG1000|consen 541 SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGT 604 (689)
T ss_pred ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCc
Confidence 5 44443 3446778999999 5555 4445577777888888888888654444444554443
No 176
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.03 E-value=3.7e-10 Score=141.12 Aligned_cols=88 Identities=22% Similarity=0.307 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+++.|++|.++|||||+++++|||+|..++|| +|+ .|-+..+|.||+|||||.|.. |.++
T Consensus 258 l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI----~~~------~p~s~~~y~Q~~GRaGR~G~~--~~~i 325 (591)
T TIGR01389 258 LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVI----HYD------MPGNLESYYQEAGRAGRDGLP--AEAI 325 (591)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEE----EcC------CCCCHHHHhhhhccccCCCCC--ceEE
Confidence 6889999999999999999999999999999999999988 566 466899999999999999976 8899
Q ss_pred EEecCCcHHHHHHhhcCCCC
Q 000849 81 IITGHSELQYYLSLMNQQLP 100 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~ 100 (1254)
++.+.++...+..++....|
T Consensus 326 l~~~~~d~~~~~~~i~~~~~ 345 (591)
T TIGR01389 326 LLYSPADIALLKRRIEQSEA 345 (591)
T ss_pred EecCHHHHHHHHHHHhccCC
Confidence 99888888777777665444
No 177
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.02 E-value=7e-10 Score=99.71 Aligned_cols=70 Identities=27% Similarity=0.332 Sum_probs=64.6
Q ss_pred hccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccccccCCc-c-eeecccccCCHHHHHHhhcccCCCC
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-A-HLATGRKMLILTTLLQMMGHAGRPL 812 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gvdip-~-~~V~~~~~~s~~~~~Qr~GRaGR~g 812 (1254)
+..+..+||+++.++|..+++.|++|..+||++|+++++|+|+| + .+|..+.+++..+|.|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 66799999999999999999999999999999999999999999 4 5557777899999999999999975
No 178
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.00 E-value=2e-09 Score=132.48 Aligned_cols=147 Identities=21% Similarity=0.291 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+++.|..+|+.|++|.++++||||||..||+......|| .|. .|.++..++|++||||+ +.+...+++
T Consensus 288 lSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI----q~~------SP~sV~r~lQRiGRsgH-r~~~~Skg~ 356 (814)
T COG1201 288 LSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI----QLG------SPKSVNRFLQRIGRAGH-RLGEVSKGI 356 (814)
T ss_pred ccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE----EeC------CcHHHHHHhHhcccccc-ccCCcccEE
Confidence 6899999999999999999999999999999999999999 343 56789999999999999 777789999
Q ss_pred EEecCCcHHHHH------Hhh---cCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCC
Q 000849 81 IITGHSELQYYL------SLM---NQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLS 151 (1254)
Q Consensus 81 i~~~~~~~~~~~------~~~---~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~ 151 (1254)
+++.+. .+... ... -+..++.-.-...|..|+++.+... ..+.+++++.++++|.|..+.
T Consensus 357 ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L~--------- 425 (814)
T COG1201 357 IIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADLS--------- 425 (814)
T ss_pred EEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccCC---------
Confidence 998872 12111 111 1222344445567888888888877 789999999999999998763
Q ss_pred CCcCchhHHHHHHHHHHHHHHHhhh--cCccc
Q 000849 152 PEVLDITLGERITDLIHTAANVLDR--NNLVK 181 (1254)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~L~~--~~~i~ 181 (1254)
.+...+.+++|.. ++.++
T Consensus 426 ------------~e~f~~v~~~l~~~~~~~~~ 445 (814)
T COG1201 426 ------------REDFRLVLRYLAGEKNVYAK 445 (814)
T ss_pred ------------HHHHHHHHHHHhhcccceeE
Confidence 3456778888888 55554
No 179
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.99 E-value=6.5e-10 Score=135.32 Aligned_cols=76 Identities=24% Similarity=0.414 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+++.|++|.++|||||++|++|||+|..++|| .|+ .|.++.+|+||+|||||.|.+ |.++
T Consensus 369 ~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI----~~~------~P~s~~~y~Qr~GRaGR~g~~--g~~i 436 (475)
T PRK01297 369 VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI----NFT------LPEDPDDYVHRIGRTGRAGAS--GVSI 436 (475)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEE----EeC------CCCCHHHHHHhhCccCCCCCC--ceEE
Confidence 5788999999999999999999999999999999999999 355 467899999999999999988 9999
Q ss_pred EEecCCcH
Q 000849 81 IITGHSEL 88 (1254)
Q Consensus 81 i~~~~~~~ 88 (1254)
.+...++.
T Consensus 437 ~~~~~~d~ 444 (475)
T PRK01297 437 SFAGEDDA 444 (475)
T ss_pred EEecHHHH
Confidence 99887653
No 180
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.95 E-value=1e-08 Score=98.61 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=79.4
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL 545 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 545 (1254)
+....++...+|+|||.-.+--+++.... .++ ++|++.|||.++.++.+.++. .++++. +.-... ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~--rvLvL~PTRvva~em~~aL~~-----~~~~~~--t~~~~~--~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--RRL--RVLVLAPTRVVAEEMYEALKG-----LPVRFH--TNARMR--TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--TT----EEEEESSHHHHHHHHHHTTT-----SSEEEE--STTSS-----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--ccC--eEEEecccHHHHHHHHHHHhc-----CCcccC--ceeeec--cc
Confidence 34566777999999998655444443333 245 999999999999998887753 133332 111111 12
Q ss_pred cccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh
Q 000849 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624 (1254)
Q Consensus 546 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~ 624 (1254)
..+.-|-++|...+...+.. .....++++||+||+|... +.--.+...+..... ....++|.||||+|..
T Consensus 70 ~g~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~D----p~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTD----PTSIAARGYLRELAE--SGEAKVIFMTATPPGS 139 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--S----HHHHHHHHHHHHHHH--TTS-EEEEEESS-TT-
T ss_pred cCCCcccccccHHHHHHhcC---cccccCccEEEEeccccCC----HHHHhhheeHHHhhh--ccCeeEEEEeCCCCCC
Confidence 23457888898887444333 3347899999999999754 222223344444433 2457899999998744
No 181
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.94 E-value=1.2e-09 Score=131.96 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+++.|++|.++|||||+++++|||+|...+|| .|+ .|.++.+|.||+|||||.|.. |.++
T Consensus 279 ~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI----~~~------~P~~~~~yvqR~GRaGR~g~~--G~ai 346 (456)
T PRK10590 279 KSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV----NYE------LPNVPEDYVHRIGRTGRAAAT--GEAL 346 (456)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE----EeC------CCCCHHHhhhhccccccCCCC--eeEE
Confidence 5789999999999999999999999999999999999998 466 467899999999999999877 8888
Q ss_pred EEecCCcHH
Q 000849 81 IITGHSELQ 89 (1254)
Q Consensus 81 i~~~~~~~~ 89 (1254)
.+...++..
T Consensus 347 ~l~~~~d~~ 355 (456)
T PRK10590 347 SLVCVDEHK 355 (456)
T ss_pred EEecHHHHH
Confidence 887765544
No 182
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.94 E-value=1.2e-07 Score=112.27 Aligned_cols=356 Identities=15% Similarity=0.118 Sum_probs=192.7
Q ss_pred CCCcChHHHHHHHHHhc---CCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh
Q 000849 419 YKLFNPIQTQVFAVLYN---TEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA 495 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~---~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~ 495 (1254)
+..+.++|+..+..+++ .+..-++. -.-|-|||...+. .|..+...
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILg------------------------------DeMGLGKTIQiis-FLaaL~~S 251 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILG------------------------------DEMGLGKTIQIIS-FLAALHHS 251 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeec------------------------------ccccCccchhHHH-HHHHHhhc
Confidence 55788999999988763 22334555 7899999965432 22222221
Q ss_pred -cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecccccc------------c----hhhcccCcEEEEcHhh
Q 000849 496 -SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM------------D----LKLLEKGQIIISTPEK 558 (1254)
Q Consensus 496 -~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~------------~----~~~~~~~~Iiv~Tpe~ 558 (1254)
.-.+ .+|||||. .+..|..++|...+.. .+|..++|..+. + ........|+++|++.
T Consensus 252 ~k~~~--paLIVCP~-Tii~qW~~E~~~w~p~---~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~ 325 (923)
T KOG0387|consen 252 GKLTK--PALIVCPA-TIIHQWMKEFQTWWPP---FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDG 325 (923)
T ss_pred ccccC--ceEEEccH-HHHHHHHHHHHHhCcc---eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhh
Confidence 2234 79999997 5667888888886653 577777765431 0 0122345899999987
Q ss_pred HHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCC-CC-hHHHHHhhcCC-C
Q 000849 559 WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSL-AN-AKDLGEWIGAS-S 635 (1254)
Q Consensus 559 l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl-~~-~~~l~~~l~~~-~ 635 (1254)
+... .....--.++++|+||.|.+-.+. .+..++ +.+....-| |.||.|+ .| ..++-..+.-- +
T Consensus 326 ~r~~----~d~l~~~~W~y~ILDEGH~IrNpn---s~isla-----ckki~T~~R-iILSGTPiQNnL~ELwsLfDFv~P 392 (923)
T KOG0387|consen 326 FRIQ----GDDLLGILWDYVILDEGHRIRNPN---SKISLA-----CKKIRTVHR-IILSGTPIQNNLTELWSLFDFVFP 392 (923)
T ss_pred hccc----CcccccccccEEEecCcccccCCc---cHHHHH-----HHhccccce-EEeeCccccchHHHHHHHhhhccC
Confidence 6211 112223467899999999987533 222222 222234455 4556554 33 23333222211 1
Q ss_pred C---eeEecCCCCcccccEEEEeeccC-CChH----HH----HHhhCHH-----HHHHHHh-hhhcCCCeEEEecChhhH
Q 000849 636 H---GVFNFPPGVRPVPLEIQIQGVDI-TNFE----AR----MKAMTKP-----TYTAIMQ-HAKNEKPALVFVPSRKYA 697 (1254)
Q Consensus 636 ~---~~~~~~~~~r~v~l~~~~~~~~~-~~~~----~~----~~~~~~~-----~~~~i~~-~~~~~~~~lVF~~s~~~~ 697 (1254)
+ ..-.|...+ ..|+... ++.. .... .+ +..+..| .-..+.. .+....-.+|||.--..-
T Consensus 393 G~Lgt~~~F~~~f-~~pI~~G--gyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~Q 469 (923)
T KOG0387|consen 393 GKLGTLPVFQQNF-EHPINRG--GYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQ 469 (923)
T ss_pred CcccchHHHHhhh-hhheecc--ccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHH
Confidence 0 000111111 1111111 1111 0000 00 1111111 1111112 224455689999876666
Q ss_pred HHHHHHHHHHhh----ccCcccc--------------ccc-cc--------Ch----------hchhhHHhh-------c
Q 000849 698 RLTAVDLMIYSC----KDSDQKS--------------AFL-LC--------SA----------KEVEPHVSI-------I 733 (1254)
Q Consensus 698 ~~la~~L~~~~~----~~~~~~~--------------~~~-~~--------~~----------~~l~~~~~~-------~ 733 (1254)
..++..+.+--. .++.... ..+ .+ .. +.+...+.. +
T Consensus 470 R~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rv 549 (923)
T KOG0387|consen 470 RRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRV 549 (923)
T ss_pred HHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEE
Confidence 666654432110 0000000 000 00 00 000000000 0
Q ss_pred ------------ChHHHHHHhhccceeecCCCCHHHHHHHHHHHhcCC-c-eEEEeCcccccccCCc--ceeecccccCC
Q 000849 734 ------------QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGK-I-KVCVMSSSMCWEVPLT--AHLATGRKMLI 797 (1254)
Q Consensus 734 ------------~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~-~-~VLVaT~~l~~Gvdip--~~~V~~~~~~s 797 (1254)
-...|...-++...-+.|..+...|....+.|.++. + -.|++|.+.+-|+|+- .++|.+++..+
T Consensus 550 llFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWN 629 (923)
T KOG0387|consen 550 LLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWN 629 (923)
T ss_pred EEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCC
Confidence 011222222556667789999999999999999774 3 3567889999999999 56668888899
Q ss_pred HHHHHHhhcccCCCCCCCCceEEEEccCCc
Q 000849 798 LTTLLQMMGHAGRPLLDNSEKCVILCHAPH 827 (1254)
Q Consensus 798 ~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~ 827 (1254)
++.=.|..-||-|.|+...-.+|.+.+...
T Consensus 630 PStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 630 PSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred CccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 999999999999999877777777777653
No 183
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.90 E-value=1.2e-09 Score=131.20 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+.+.|++|.++|||||+++++|||+|..++|| .|| .|.++.+|.||+|||||.|.. |.++
T Consensus 289 ~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI----~~d------~P~s~~~yiqR~GR~gR~G~~--G~ai 356 (423)
T PRK04837 289 VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVF----NYD------LPDDCEDYVHRIGRTGRAGAS--GHSI 356 (423)
T ss_pred CChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEE----EeC------CCCchhheEeccccccCCCCC--eeEE
Confidence 5678999999999999999999999999999999999998 576 467899999999999999977 9999
Q ss_pred EEecCCcHHHH
Q 000849 81 IITGHSELQYY 91 (1254)
Q Consensus 81 i~~~~~~~~~~ 91 (1254)
.+..+.+...+
T Consensus 357 ~~~~~~~~~~~ 367 (423)
T PRK04837 357 SLACEEYALNL 367 (423)
T ss_pred EEeCHHHHHHH
Confidence 99877654433
No 184
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.88 E-value=2.4e-09 Score=130.11 Aligned_cols=78 Identities=27% Similarity=0.397 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+|..+++.|++|.++|||||+.+++|+|+|...+|| .|| .|.++..|.||+|||||.|.+ |.++
T Consensus 276 ~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI----~~d------~p~~~~~yiqR~GRtGR~g~~--G~ai 343 (460)
T PRK11776 276 LEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI----NYE------LARDPEVHVHRIGRTGRAGSK--GLAL 343 (460)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE----Eec------CCCCHhHhhhhcccccCCCCc--ceEE
Confidence 5789999999999999999999999999999999999999 455 567899999999999999877 9999
Q ss_pred EEecCCcHHH
Q 000849 81 IITGHSELQY 90 (1254)
Q Consensus 81 i~~~~~~~~~ 90 (1254)
.+...++...
T Consensus 344 ~l~~~~e~~~ 353 (460)
T PRK11776 344 SLVAPEEMQR 353 (460)
T ss_pred EEEchhHHHH
Confidence 9988766544
No 185
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.88 E-value=4e-08 Score=121.05 Aligned_cols=85 Identities=12% Similarity=-0.041 Sum_probs=74.1
Q ss_pred hccceeecCCCCHHHHHHHHHHHhcC---CceEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCc
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFEAG---KIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSE 817 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~~g---~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G 817 (1254)
++..--+.|++..+-|+..++.|..- ..-.|+||.+.+-|||+- |++| .++.-.++.+=+|...||-|-|+...-
T Consensus 723 ~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~V 802 (1373)
T KOG0384|consen 723 GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHV 802 (1373)
T ss_pred CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceE
Confidence 55667789999999999999999753 678999999999999999 5555 888889999999999999999998888
Q ss_pred eEEEEccCCc
Q 000849 818 KCVILCHAPH 827 (1254)
Q Consensus 818 ~~iil~~~~~ 827 (1254)
.+|.|++.+.
T Consensus 803 nVYRLVTk~T 812 (1373)
T KOG0384|consen 803 NVYRLVTKNT 812 (1373)
T ss_pred EEEEEecCCc
Confidence 8998888764
No 186
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.88 E-value=2.5e-09 Score=129.07 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+|..+.+.|++|.++|||||+.+++|||+|..++|| .|| .|.+..+|.||+|||||.|.+ |.++
T Consensus 279 ~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI----~~d------~p~s~~~yiqr~GR~gR~g~~--g~ai 346 (434)
T PRK11192 279 MVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI----NFD------MPRSADTYLHRIGRTGRAGRK--GTAI 346 (434)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE----EEC------CCCCHHHHhhcccccccCCCC--ceEE
Confidence 5789999999999999999999999999999999999999 466 567899999999999999887 9999
Q ss_pred EEecCCcHHHH
Q 000849 81 IITGHSELQYY 91 (1254)
Q Consensus 81 i~~~~~~~~~~ 91 (1254)
.+....+...+
T Consensus 347 ~l~~~~d~~~~ 357 (434)
T PRK11192 347 SLVEAHDHLLL 357 (434)
T ss_pred EEecHHHHHHH
Confidence 88876554433
No 187
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.87 E-value=3.1e-09 Score=130.98 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+|..+++.|++|.++|||||+++++|||+|..++|| .|| .|.++.+|.||+|||||.|.+ |.++
T Consensus 291 l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VI----nyd------~P~s~~~yvqRiGRaGR~G~~--G~ai 358 (572)
T PRK04537 291 VPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVY----NYD------LPFDAEDYVHRIGRTARLGEE--GDAI 358 (572)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEE----EcC------CCCCHHHHhhhhcccccCCCC--ceEE
Confidence 6789999999999999999999999999999999999998 466 578999999999999999987 9999
Q ss_pred EEecCCcH
Q 000849 81 IITGHSEL 88 (1254)
Q Consensus 81 i~~~~~~~ 88 (1254)
.++...+.
T Consensus 359 ~~~~~~~~ 366 (572)
T PRK04537 359 SFACERYA 366 (572)
T ss_pred EEecHHHH
Confidence 88876443
No 188
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.82 E-value=6.6e-09 Score=117.73 Aligned_cols=95 Identities=24% Similarity=0.389 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHhC--CCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcce
Q 000849 1 MKRGDRQLVEDLFCD--GHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 78 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~--g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~ 78 (1254)
|||+.|...-.+|++ +..+|||||.+.+||.||..++||+.+...|+|.+- .++++++++|++|||||.|-. ...
T Consensus 391 LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~--~~it~sqikQIAGRAGRf~s~-~~~ 467 (700)
T KOG0953|consen 391 LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRET--EDITVSQIKQIAGRAGRFGSK-YPQ 467 (700)
T ss_pred CCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccc--eeccHHHHHHHhhcccccccC-CcC
Confidence 789999999999988 999999999999999999999999999999997764 899999999999999998653 334
Q ss_pred EEEEec-CCcHHHHHHhhcCC
Q 000849 79 GIIITG-HSELQYYLSLMNQQ 98 (1254)
Q Consensus 79 ~~i~~~-~~~~~~~~~~~~~~ 98 (1254)
|++-|- ..++....+.+..+
T Consensus 468 G~vTtl~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 468 GEVTTLHSEDLKLLKRILKRP 488 (700)
T ss_pred ceEEEeeHhhHHHHHHHHhCC
Confidence 444443 35566666666543
No 189
>PTZ00110 helicase; Provisional
Probab=98.80 E-value=8.4e-09 Score=126.72 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+.+.|++|.++|||||+.+++|||+|..++|| .|| .|-++.+|.||+|||||.|.. |.++
T Consensus 411 ~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI----~~d------~P~s~~~yvqRiGRtGR~G~~--G~ai 478 (545)
T PTZ00110 411 KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI----NFD------FPNQIEDYVHRIGRTGRAGAK--GASY 478 (545)
T ss_pred CcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE----EeC------CCCCHHHHHHHhcccccCCCC--ceEE
Confidence 5678999999999999999999999999999999999999 476 467899999999999999876 9999
Q ss_pred EEecCCcHHH
Q 000849 81 IITGHSELQY 90 (1254)
Q Consensus 81 i~~~~~~~~~ 90 (1254)
.+.+.++...
T Consensus 479 ~~~~~~~~~~ 488 (545)
T PTZ00110 479 TFLTPDKYRL 488 (545)
T ss_pred EEECcchHHH
Confidence 9988766543
No 190
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.78 E-value=1.1e-08 Score=91.77 Aligned_cols=61 Identities=34% Similarity=0.582 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCcc-ceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCC
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLP-AHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp-~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~ 72 (1254)
|++++|..+.+.|++|..+||++|++++.|+|+| +..||+.+ .+.+..+|.||+||+||.|
T Consensus 21 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~-----------~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 21 LSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD-----------LPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeC-----------CCCCHHHHHHhhcccccCC
Confidence 5678999999999999999999999999999999 56666632 2578999999999999976
No 191
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.76 E-value=1.4e-08 Score=127.08 Aligned_cols=74 Identities=27% Similarity=0.505 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|..+++.|++|.++|||||+++++|||+|..++|| .|++. ..+...+.|++|||||.|.. |.++
T Consensus 492 m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI----i~~~~-----r~gls~lhQ~~GRvGR~g~~--g~~i 560 (630)
T TIGR00643 492 MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV----IEDAE-----RFGLSQLHQLRGRVGRGDHQ--SYCL 560 (630)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE----EeCCC-----cCCHHHHHHHhhhcccCCCC--cEEE
Confidence 6789999999999999999999999999999999998888 45542 24678999999999999876 9999
Q ss_pred EEecC
Q 000849 81 IITGH 85 (1254)
Q Consensus 81 i~~~~ 85 (1254)
+++..
T Consensus 561 l~~~~ 565 (630)
T TIGR00643 561 LVYKN 565 (630)
T ss_pred EEECC
Confidence 99843
No 192
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.75 E-value=1.4e-08 Score=125.83 Aligned_cols=77 Identities=19% Similarity=0.425 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+.+.|++|.++|||||+.+++|||+|...+|| .|| .|.++.+|.||+|||||.|.. |.++
T Consensus 279 ~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI----~~d------~P~~~e~yvqRiGRtGRaGr~--G~ai 346 (629)
T PRK11634 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV----NYD------IPMDSESYVHRIGRTGRAGRA--GRAL 346 (629)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE----EeC------CCCCHHHHHHHhccccCCCCc--ceEE
Confidence 5788999999999999999999999999999999999999 476 567899999999999999876 9999
Q ss_pred EEecCCcHH
Q 000849 81 IITGHSELQ 89 (1254)
Q Consensus 81 i~~~~~~~~ 89 (1254)
+++...+..
T Consensus 347 ~~v~~~e~~ 355 (629)
T PRK11634 347 LFVENRERR 355 (629)
T ss_pred EEechHHHH
Confidence 998875543
No 193
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.75 E-value=4.7e-08 Score=109.90 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=60.0
Q ss_pred hcccCCChHHHHHHhhC----CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC-CCcEEEEEcchHHHHHHHHHHHHH
Q 000849 448 KLMFARLPAKQRITAAL----PNIILVLQLAPTGSGKTICAEFAILRNHQRASET-GVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i----~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~-~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
.+||++++.|.+.++.+ ..+..+++.||||+|||++++.|++..+...... .+.+++|.++|.++..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 58999999999955555 6777899999999999999999998766552221 123899999999998888777765
Q ss_pred h
Q 000849 523 K 523 (1254)
Q Consensus 523 ~ 523 (1254)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 3
No 194
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.75 E-value=4.7e-08 Score=109.90 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=60.0
Q ss_pred hcccCCChHHHHHHhhC----CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC-CCcEEEEEcchHHHHHHHHHHHHH
Q 000849 448 KLMFARLPAKQRITAAL----PNIILVLQLAPTGSGKTICAEFAILRNHQRASET-GVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i----~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~-~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
.+||++++.|.+.++.+ ..+..+++.||||+|||++++.|++..+...... .+.+++|.++|.++..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 58999999999955555 6777899999999999999999998766552221 123899999999998888777765
Q ss_pred h
Q 000849 523 K 523 (1254)
Q Consensus 523 ~ 523 (1254)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 3
No 195
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.72 E-value=2.1e-08 Score=126.32 Aligned_cols=74 Identities=27% Similarity=0.490 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|+.+++.|++|.++|||||+.+++|||+|..++|| .|++.. .+...+.||.|||||.|.. |.++
T Consensus 515 m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI----i~~~~r-----~gls~lhQ~~GRvGR~g~~--g~~i 583 (681)
T PRK10917 515 MKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV----IENAER-----FGLAQLHQLRGRVGRGAAQ--SYCV 583 (681)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE----EeCCCC-----CCHHHHHHHhhcccCCCCc--eEEE
Confidence 6789999999999999999999999999999999988888 455432 4578999999999999876 9999
Q ss_pred EEecC
Q 000849 81 IITGH 85 (1254)
Q Consensus 81 i~~~~ 85 (1254)
++++.
T Consensus 584 ll~~~ 588 (681)
T PRK10917 584 LLYKD 588 (681)
T ss_pred EEECC
Confidence 99964
No 196
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.70 E-value=9.7e-07 Score=104.51 Aligned_cols=352 Identities=15% Similarity=0.158 Sum_probs=192.8
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh-------c
Q 000849 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL-------L 546 (1254)
Q Consensus 474 apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-------~ 546 (1254)
-.-|-|||... ++.+..+.+.+..| .-+||||.-.|-+. .+++.+++. .++|..++|......+. .
T Consensus 425 DEMGLGKTiQv-IaFlayLkq~g~~g--pHLVVvPsSTleNW-lrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~i~~~~ 497 (941)
T KOG0389|consen 425 DEMGLGKTIQV-IAFLAYLKQIGNPG--PHLVVVPSSTLENW-LREFAKWCP---SLKVEPYYGSQDERRELRERIKKNK 497 (941)
T ss_pred hhccCcchhHH-HHHHHHHHHcCCCC--CcEEEecchhHHHH-HHHHHHhCC---ceEEEeccCcHHHHHHHHHHHhccC
Confidence 79999999765 34455555544455 67899998777543 556665443 57888888876433211 1
Q ss_pred ccCcEEEEcHhhHHHHHHhhhcccc--cceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC-C
Q 000849 547 EKGQIIISTPEKWDALSRRWKQRKY--VQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA-N 623 (1254)
Q Consensus 547 ~~~~Iiv~Tpe~l~~l~~~~~~~~~--l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~-~ 623 (1254)
...+|+++|+.... .....+.+ -.+++++|+||.|++-.... .|.+.+.. .+.+.|+++...++. |
T Consensus 498 ~~ydVllTTY~la~---~~kdDRsflk~~~~n~viyDEgHmLKN~~S-------eRy~~LM~-I~An~RlLLTGTPLQNN 566 (941)
T KOG0389|consen 498 DDYDVLLTTYNLAA---SSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-------ERYKHLMS-INANFRLLLTGTPLQNN 566 (941)
T ss_pred CCccEEEEEeeccc---CChHHHHHHHhccccEEEecchhhhhccch-------HHHHHhcc-ccccceEEeeCCccccc
Confidence 24599999987651 11111222 34678999999999885222 23333322 145666555444444 4
Q ss_pred hHHHHHhhcCCCCeeEecCCCCcccccEEEEeec---cC------CChHHHHHhhCHH-----HHHHHHhhhhcCCCeEE
Q 000849 624 AKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV---DI------TNFEARMKAMTKP-----TYTAIMQHAKNEKPALV 689 (1254)
Q Consensus 624 ~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~---~~------~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~lV 689 (1254)
..++...|.--...+|.- +......-...... +. .....+...+.+| ..+.+++.+.+..+.|.
T Consensus 567 L~ELiSLL~FvlP~vF~~--~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie 644 (941)
T KOG0389|consen 567 LKELISLLAFVLPKVFDS--SMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIE 644 (941)
T ss_pred HHHHHHHHHHHhhHhhhc--cchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeE
Confidence 455544433211112211 11000000000000 00 0011222233322 33444555567777888
Q ss_pred EecChhhHHHHHHHHHHHhhcc-----Cc---cc------------------------------------ccccccChhc
Q 000849 690 FVPSRKYARLTAVDLMIYSCKD-----SD---QK------------------------------------SAFLLCSAKE 725 (1254)
Q Consensus 690 F~~s~~~~~~la~~L~~~~~~~-----~~---~~------------------------------------~~~~~~~~~~ 725 (1254)
||.=.+.-..++..+....... .+ .. .+|..++...
T Consensus 645 ~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qy 724 (941)
T KOG0389|consen 645 YCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQY 724 (941)
T ss_pred eeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHH
Confidence 8876666666665555443100 00 00 0011111110
Q ss_pred ------------hhhHHhhcC-----------------h------------------------------HHHHHHhhccc
Q 000849 726 ------------VEPHVSIIQ-----------------E------------------------------EMLRATLRLGV 746 (1254)
Q Consensus 726 ------------l~~~~~~~~-----------------~------------------------------~~L~~~l~~~v 746 (1254)
+...|++.. - +.+...++++.
T Consensus 725 IfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~y 804 (941)
T KOG0389|consen 725 IFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKY 804 (941)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceE
Confidence 111111100 0 12222335556
Q ss_pred eeecCCCCHHHHHHHHHHHhcCC--ceEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCceEEEE
Q 000849 747 GYLHEGLNKSDQEVVSTLFEAGK--IKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSEKCVIL 822 (1254)
Q Consensus 747 ~~~h~~l~~~~R~~v~~~F~~g~--~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~iil 822 (1254)
.-+.|...-.+|+.+++.|...+ .-.|++|.+.+.|||+- |++| .++..+++-+=.|.--||-|.|+..+-.++.+
T Consensus 805 lRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rL 884 (941)
T KOG0389|consen 805 LRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRL 884 (941)
T ss_pred EeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEE
Confidence 67789999999999999997542 35678999999999999 5555 66666777777888899999998888888888
Q ss_pred ccCCc-HHHHHHhhcCCccccccc
Q 000849 823 CHAPH-KEYYKKFLYEAFPVESHL 845 (1254)
Q Consensus 823 ~~~~~-~~~~~~~l~~~~pies~l 845 (1254)
.+.+. .+.+.++-+..+.+|+.+
T Consensus 885 Itk~TIEE~I~~lA~~KL~Le~~l 908 (941)
T KOG0389|consen 885 ITKSTIEEGILRLAKTKLALEADL 908 (941)
T ss_pred EecCcHHHHHHHHHHHhhhhhhhh
Confidence 77664 344445544555555443
No 197
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=1.6e-06 Score=107.53 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=72.7
Q ss_pred eeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecc-ccccc-hhhcccC
Q 000849 472 QLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTV-ETAMD-LKLLEKG 549 (1254)
Q Consensus 472 v~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g-~~~~~-~~~~~~~ 549 (1254)
..+.||-|||+++.+|++-.... ++ .|-+|+..--||.-=++.+...+.- +|++|++... +.... .+..-.+
T Consensus 187 AEM~TGEGKTLvAtlp~yLnAL~---Gk--gVHvVTVNDYLA~RDaewmgply~f-LGLsvg~i~~~~~~~~~rr~aY~~ 260 (1112)
T PRK12901 187 AEMATGEGKTLVATLPVYLNALT---GN--GVHVVTVNDYLAKRDSEWMGPLYEF-HGLSVDCIDKHQPNSEARRKAYNA 260 (1112)
T ss_pred eeecCCCCchhHHHHHHHHHHHc---CC--CcEEEEechhhhhccHHHHHHHHHH-hCCceeecCCCCCCHHHHHHhCCC
Confidence 33999999999999998755554 44 4566667777877655555554443 5999998865 33333 3334467
Q ss_pred cEEEEcHhhH--HHHHHhhh---cccccceeeEEEeccccccc
Q 000849 550 QIIISTPEKW--DALSRRWK---QRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 550 ~Iiv~Tpe~l--~~l~~~~~---~~~~l~~v~liIiDEaH~l~ 587 (1254)
||.++|..-| |.+-.+.. .......+.+.||||+|.++
T Consensus 261 DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 261 DITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred cceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 9999998876 32222211 12234568899999999654
No 198
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.62 E-value=1.3e-06 Score=107.60 Aligned_cols=80 Identities=18% Similarity=0.054 Sum_probs=65.8
Q ss_pred eecCCCCHHHHHHHHHHHhcC-CceEEE-eCcccccccCCc-ceeeccccc-CCHHHHHHhhcccCCCCCCCCceEEEEc
Q 000849 748 YLHEGLNKSDQEVVSTLFEAG-KIKVCV-MSSSMCWEVPLT-AHLATGRKM-LILTTLLQMMGHAGRPLLDNSEKCVILC 823 (1254)
Q Consensus 748 ~~h~~l~~~~R~~v~~~F~~g-~~~VLV-aT~~l~~Gvdip-~~~V~~~~~-~s~~~~~Qr~GRaGR~g~d~~G~~iil~ 823 (1254)
.+.|+.++.+|.++.++|.++ .++||+ +|-+.+-|+|+- |++|.+-++ .++..=+|.+-||-|-|+...-.+|.+.
T Consensus 1372 RLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlI 1451 (1549)
T KOG0392|consen 1372 RLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLI 1451 (1549)
T ss_pred EecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeeh
Confidence 578999999999999999998 889887 567999999999 777733333 6666669999999999987777788777
Q ss_pred cCCc
Q 000849 824 HAPH 827 (1254)
Q Consensus 824 ~~~~ 827 (1254)
+...
T Consensus 1452 trGT 1455 (1549)
T KOG0392|consen 1452 TRGT 1455 (1549)
T ss_pred hccc
Confidence 6654
No 199
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.60 E-value=1.6e-06 Score=112.19 Aligned_cols=139 Identities=19% Similarity=0.148 Sum_probs=86.2
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcc
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLE 547 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 547 (1254)
..-++.=-||||||+.....+-..+.. .+.+++++|+-++.|-.|+.+.+.+ ++..... .. -..+...-.+.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~-~~~~~~~-~~-~~~s~~~Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQS-FGKVAFN-DP-KAESTSELKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHH-HHHhhhh-cc-cccCHHHHHHHHh
Confidence 346777899999998876554433333 3445999999999999999999987 5433111 11 1111111122333
Q ss_pred --cCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 548 --KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 548 --~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
...|+|||-.+|............-.+=-++|+||||+-- +.....+++... ++...+|+|+|+-
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ------~G~~~~~~~~~~----~~a~~~gFTGTPi 414 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ------YGELAKLLKKAL----KKAIFIGFTGTPI 414 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc------ccHHHHHHHHHh----ccceEEEeeCCcc
Confidence 3489999999996555442111122333579999999643 222344444443 4588999999975
No 200
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.59 E-value=5.5e-08 Score=96.19 Aligned_cols=69 Identities=35% Similarity=0.517 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccce-EEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAH-TVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 79 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~-~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~ 79 (1254)
++..+|..+.+.|.+|..++|+||+++++|+|+|.. .||+. + .+.+..++.||+|||||.|. .|.+
T Consensus 62 ~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~-----~------~~~~~~~~~Q~~GR~~R~~~--~~~~ 128 (131)
T cd00079 62 GSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINY-----D------LPWSPSSYLQRIGRAGRAGQ--KGTA 128 (131)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEe-----C------CCCCHHHheecccccccCCC--CceE
Confidence 456889999999999999999999999999999954 45542 2 35779999999999999997 4777
Q ss_pred EEE
Q 000849 80 III 82 (1254)
Q Consensus 80 ~i~ 82 (1254)
+++
T Consensus 129 ~~~ 131 (131)
T cd00079 129 ILL 131 (131)
T ss_pred EeC
Confidence 653
No 201
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.56 E-value=4.8e-07 Score=103.66 Aligned_cols=144 Identities=19% Similarity=0.174 Sum_probs=80.9
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccc---cchh
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA---MDLK 544 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~---~~~~ 544 (1254)
...++.-.+|+|||..++..+..........+.-++||++|. .+..+...++.+.+... ..++....|+.. ....
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSS
T ss_pred CCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccc-ccccccccccccccccccc
Confidence 345555899999998886655433332111111159999999 77788888888866442 457777777651 1122
Q ss_pred hcccCcEEEEcHhhHHHHHHhhh-cccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 545 LLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l~~l~~~~~-~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
.....+++|+|++.+........ ....--++++||+||+|.+.+..+..+..+ . .+. ....+++|||+-
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l----~----~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL----R----KLR-ARYRWLLSGTPI 173 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH----H----CCC-ECEEEEE-SS-S
T ss_pred ccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc----c----ccc-cceEEeeccccc
Confidence 34567999999998861101110 011123589999999999964443232211 1 122 566788999964
No 202
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.55 E-value=1.1e-07 Score=100.82 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|..++|+.|=..|++|..+.||||.-+.+||+.+|.+||| -|| -|-+...|++++||+||.|.= |.+|
T Consensus 356 M~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI----NFD------fpk~aEtYLHRIGRsGRFGhl--GlAI 423 (459)
T KOG0326|consen 356 MAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI----NFD------FPKNAETYLHRIGRSGRFGHL--GLAI 423 (459)
T ss_pred HHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE----ecC------CCCCHHHHHHHccCCccCCCc--ceEE
Confidence 4578999999999999999999999999999999999999 366 355689999999999999987 8888
Q ss_pred EEecCCcHHH---HHHhhc-CCCCchhhHH
Q 000849 81 IITGHSELQY---YLSLMN-QQLPIESQFV 106 (1254)
Q Consensus 81 i~~~~~~~~~---~~~~~~-~~~~i~s~l~ 106 (1254)
-+.+..+... .++-++ +-.||.|..-
T Consensus 424 nLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 424 NLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred EEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 7766544332 222233 2336665543
No 203
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.8e-07 Score=97.54 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+-+.||+|+-+||++|...|+|++.|..+.|| -|| .|.....|.+++||+||.|.. |.+|
T Consensus 300 m~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslvi----NYD------LP~nre~YIHRIGRSGRFGRk--Gvai 367 (400)
T KOG0328|consen 300 MEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVI----NYD------LPNNRELYIHRIGRSGRFGRK--GVAI 367 (400)
T ss_pred cchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEE----ecC------CCccHHHHhhhhccccccCCc--ceEE
Confidence 6789999999999999999999999999999999999999 477 577789999999999999887 9999
Q ss_pred EEecCCcHHHHHH
Q 000849 81 IITGHSELQYYLS 93 (1254)
Q Consensus 81 i~~~~~~~~~~~~ 93 (1254)
=+..+++...|..
T Consensus 368 nFVk~~d~~~lrd 380 (400)
T KOG0328|consen 368 NFVKSDDLRILRD 380 (400)
T ss_pred EEecHHHHHHHHH
Confidence 9999888765554
No 204
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.53 E-value=1.3e-07 Score=103.81 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
-..+|.+|.+.|.+|.+.|||||.+++|||+.|.++.|| +||+ +-+..-|.|..|||||.|.- +++=+
T Consensus 290 K~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi----HW~~------~qn~AgYYQESGRAGRDGk~--SyCRL 357 (641)
T KOG0352|consen 290 KKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI----HWSP------SQNLAGYYQESGRAGRDGKR--SYCRL 357 (641)
T ss_pred ccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE----ecCc------hhhhHHHHHhccccccCCCc--cceee
Confidence 457899999999999999999999999999999999999 7884 34589999999999999987 78888
Q ss_pred EecCCcHHH
Q 000849 82 ITGHSELQY 90 (1254)
Q Consensus 82 ~~~~~~~~~ 90 (1254)
....++.+.
T Consensus 358 YYsR~D~~~ 366 (641)
T KOG0352|consen 358 YYSRQDKNA 366 (641)
T ss_pred eecccchHH
Confidence 877766553
No 205
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.48 E-value=2.2e-07 Score=118.94 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+.+.|++|+++|||||+.+++|||+|..++|| .++.. ..+..+|.||+||+||.|.. |.++
T Consensus 696 m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI----i~~a~-----~~gls~l~Qr~GRvGR~g~~--g~ai 764 (926)
T TIGR00580 696 MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII----IERAD-----KFGLAQLYQLRGRVGRSKKK--AYAY 764 (926)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE----EecCC-----CCCHHHHHHHhcCCCCCCCC--eEEE
Confidence 6789999999999999999999999999999999877766 23321 24567899999999998876 9999
Q ss_pred EEecCC
Q 000849 81 IITGHS 86 (1254)
Q Consensus 81 i~~~~~ 86 (1254)
+++..+
T Consensus 765 ll~~~~ 770 (926)
T TIGR00580 765 LLYPHQ 770 (926)
T ss_pred EEECCc
Confidence 998653
No 206
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.39 E-value=4.6e-07 Score=114.36 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++.+|..|.+.|-.|.++|+|||=+|+||||.|.++.|| +|+ .|-+...|.|.+|||||.|.. ..++
T Consensus 519 l~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi----H~~------lPks~E~YYQE~GRAGRDG~~--s~C~ 586 (941)
T KOG0351|consen 519 LPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI----HYS------LPKSFEGYYQEAGRAGRDGLP--SSCV 586 (941)
T ss_pred CCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE----ECC------CchhHHHHHHhccccCcCCCc--ceeE
Confidence 7889999999999999999999999999999999999999 565 678899999999999999998 8899
Q ss_pred EEecCCcHHHHHHhhcCC
Q 000849 81 IITGHSELQYYLSLMNQQ 98 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~ 98 (1254)
++....+......++.+.
T Consensus 587 l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 587 LLYGYADISELRRLLTSG 604 (941)
T ss_pred EecchhHHHHHHHHHHcc
Confidence 998887777666665544
No 207
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.37 E-value=8.2e-07 Score=116.33 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+...|++|+++|||||+.++.|||+|..++||- +++ ..++..+|.|++||+||.|.. |+++
T Consensus 845 m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~a-----d~fglaq~~Qr~GRvGR~g~~--g~a~ 913 (1147)
T PRK10689 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERA-----DHFGLAQLHQLRGRVGRSHHQ--AYAW 913 (1147)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecC-----CCCCHHHHHHHhhccCCCCCc--eEEE
Confidence 67899999999999999999999999999999998777772 221 124567899999999999876 9999
Q ss_pred EEecCC
Q 000849 81 IITGHS 86 (1254)
Q Consensus 81 i~~~~~ 86 (1254)
+++..+
T Consensus 914 ll~~~~ 919 (1147)
T PRK10689 914 LLTPHP 919 (1147)
T ss_pred EEeCCC
Confidence 998653
No 208
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.34 E-value=2.5e-06 Score=92.83 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|.-++|..+-+-|++|.-+||++|+.+|+|++.+-.++||. ||--...-..-+...|++++||+||.|.. |.++
T Consensus 364 l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~~~~~pD~etYlHRiGRtGRFGkk--G~a~ 437 (477)
T KOG0332|consen 364 LTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVKYTGEPDYETYLHRIGRTGRFGKK--GLAI 437 (477)
T ss_pred chhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe----cCCccccCCCCCHHHHHHHhccccccccc--ceEE
Confidence 56789999999999999999999999999999999999993 55211111236789999999999999887 9999
Q ss_pred EEecCCc
Q 000849 81 IITGHSE 87 (1254)
Q Consensus 81 i~~~~~~ 87 (1254)
-+.++.+
T Consensus 438 n~v~~~~ 444 (477)
T KOG0332|consen 438 NLVDDKD 444 (477)
T ss_pred EeecccC
Confidence 8887643
No 209
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.1e-06 Score=107.07 Aligned_cols=74 Identities=30% Similarity=0.520 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|..+-+.|++|.++|||||...|+|+++|....|| .|| .|.++.+|.+++||+||.|.. |.++
T Consensus 307 l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi----nyD------~p~~~e~yvHRiGRTgRaG~~--G~ai 374 (513)
T COG0513 307 LPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI----NYD------LPLDPEDYVHRIGRTGRAGRK--GVAI 374 (513)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE----Ecc------CCCCHHHheeccCccccCCCC--CeEE
Confidence 6889999999999999999999999999999999999998 587 568899999999999999966 9999
Q ss_pred EEecCC
Q 000849 81 IITGHS 86 (1254)
Q Consensus 81 i~~~~~ 86 (1254)
.++...
T Consensus 375 ~fv~~~ 380 (513)
T COG0513 375 SFVTEE 380 (513)
T ss_pred EEeCcH
Confidence 998864
No 210
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.28 E-value=1.5e-06 Score=102.35 Aligned_cols=74 Identities=23% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCHHHHHHH----HHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCC--
Q 000849 1 MKRGDRQLV----EDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYD-- 74 (1254)
Q Consensus 1 l~~~~R~~v----e~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~-- 74 (1254)
|+..+|..+ -+.|++|..+|||||+.+++|||+|...||. .+.++..|.|++||+||.|..
T Consensus 258 ~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~-------------~~~~~~~~iqr~GR~gR~g~~~~ 324 (358)
T TIGR01587 258 FTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISADVMIT-------------ELAPIDSLIQRLGRLHRYGRKNG 324 (358)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCCEEEE-------------cCCCHHHHHHHhccccCCCCCCC
Confidence 456778664 4679999999999999999999999776665 134578999999999999865
Q ss_pred CcceEEEEecCCc
Q 000849 75 SYGEGIIITGHSE 87 (1254)
Q Consensus 75 ~~g~~~i~~~~~~ 87 (1254)
..|.++++...++
T Consensus 325 ~~~~~~v~~~~~~ 337 (358)
T TIGR01587 325 ENFEVYIITIAPE 337 (358)
T ss_pred CCCeEEEEeecCC
Confidence 3468888876644
No 211
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.27 E-value=1.5e-06 Score=98.03 Aligned_cols=84 Identities=23% Similarity=0.397 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+...|...-..|++|.|+|||||..||+|+++-....|| -|| .|++...|.+++||.||.|.+ |.++
T Consensus 467 l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI----NYd------~P~~~ktyVHR~GRTARAgq~--G~a~ 534 (620)
T KOG0350|consen 467 LNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI----NYD------PPASDKTYVHRAGRTARAGQD--GYAI 534 (620)
T ss_pred hhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe----ecC------CCchhhHHHHhhcccccccCC--ceEE
Confidence 4567899999999999999999999999999999999999 477 578899999999999999999 9999
Q ss_pred EEecCCcHHHHHHhhc
Q 000849 81 IITGHSELQYYLSLMN 96 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~ 96 (1254)
-+....+...|.+++.
T Consensus 535 tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 535 TLLDKHEKRLFSKLLK 550 (620)
T ss_pred EeeccccchHHHHHHH
Confidence 9988877777777653
No 212
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.26 E-value=9e-05 Score=87.15 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=95.4
Q ss_pred eeeccCCCchHHHHHHHHHHHHHhh------cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccc--cc
Q 000849 471 LQLAPTGSGKTICAEFAILRNHQRA------SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA--MD 542 (1254)
Q Consensus 471 iv~apTGsGKT~~~~l~il~~l~~~------~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~--~~ 542 (1254)
|+-..-|-|||+..+-.|+..-... .+... +.+||+|. .|..|...++.+++... -++|..++|... ..
T Consensus 349 ILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev~~rl~~n-~LsV~~~HG~n~r~i~ 425 (901)
T KOG4439|consen 349 ILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEVARRLEQN-ALSVYLYHGPNKREIS 425 (901)
T ss_pred ccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHHHHHHhhc-ceEEEEecCCccccCC
Confidence 3337889999986655554332211 11112 58999997 57788899999888876 789999999863 34
Q ss_pred hhhcccCcEEEEcHhhHHH----HHHhhhcccccce--eeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEE
Q 000849 543 LKLLEKGQIIISTPEKWDA----LSRRWKQRKYVQQ--VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVA 616 (1254)
Q Consensus 543 ~~~~~~~~Iiv~Tpe~l~~----l~~~~~~~~~l~~--v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~ 616 (1254)
.+.+...||+|+|+.-... -+........+.+ +.-||+||||.+-+ +...-...+.++. ...|. +
T Consensus 426 ~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN-~~tq~S~AVC~L~-------a~~RW-c 496 (901)
T KOG4439|consen 426 AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN-SNTQCSKAVCKLS-------AKSRW-C 496 (901)
T ss_pred HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc-cchhHHHHHHHHh-------hccee-e
Confidence 5678889999999875522 1112122222333 46799999999884 3333344455554 34554 5
Q ss_pred ecCCC-CCh----HHHHHhhcCCC
Q 000849 617 LSTSL-ANA----KDLGEWIGASS 635 (1254)
Q Consensus 617 lSATl-~~~----~~l~~~l~~~~ 635 (1254)
+|+|+ .|. -.+..||++.+
T Consensus 497 lTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 497 LTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred cccCccccchhHHHHHHHHhcCCC
Confidence 55554 332 33456666654
No 213
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=98.25 E-value=1.8e-06 Score=97.72 Aligned_cols=80 Identities=23% Similarity=0.381 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
+.++|+.+-..|++|.-+|+|||...+.||++|.+..|| -|| ..-++.||.+++||.||.|.. |.++-
T Consensus 552 ~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVi----nyd------maksieDYtHRIGRTgRAGk~--GtaiS 619 (673)
T KOG0333|consen 552 SQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVI----NYD------MAKSIEDYTHRIGRTGRAGKS--GTAIS 619 (673)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceee----ecc------hhhhHHHHHHHhccccccccC--ceeEE
Confidence 468899999999999999999999999999999999999 366 556899999999999999987 99998
Q ss_pred EecCCcHHHHHH
Q 000849 82 ITGHSELQYYLS 93 (1254)
Q Consensus 82 ~~~~~~~~~~~~ 93 (1254)
+.+..+.+.|..
T Consensus 620 flt~~dt~v~yd 631 (673)
T KOG0333|consen 620 FLTPADTAVFYD 631 (673)
T ss_pred EeccchhHHHHH
Confidence 887766554443
No 214
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.16 E-value=9.4e-06 Score=103.09 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecC----ccccCCCCc----cccCCHHHHHHHhcccCCCC
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGT----QVYNPEKGA----WTELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~----~~~~~~~~~----~~~~~~~~~~qm~GRAGR~~ 72 (1254)
|+.++|..+-+.|++|..+|||||+..+.||++|..++||-.- ..||+..|. ...+|-..+.|++|||||.
T Consensus 246 L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~- 324 (819)
T TIGR01970 246 LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL- 324 (819)
T ss_pred CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-
Confidence 6788999999999999999999999999999999999999532 357877652 3458999999999999997
Q ss_pred CCCcceEEEEecCCcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCC
Q 000849 73 YDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSP 152 (1254)
Q Consensus 73 ~~~~g~~~i~~~~~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~ 152 (1254)
..|.+|-+.+..+...+.. ...|+-..+.| ...++...+.|. .+..+ |.| ...|.
T Consensus 325 --~~G~cyrL~t~~~~~~l~~-~~~PEI~r~~L----~~~~L~l~~~g~-~~~~~--------~~~---l~~P~------ 379 (819)
T TIGR01970 325 --EPGVCYRLWSEEQHQRLPA-QDEPEILQADL----SGLALELAQWGA-KDPSD--------LRW---LDAPP------ 379 (819)
T ss_pred --CCCEEEEeCCHHHHHhhhc-CCCcceeccCc----HHHHHHHHHcCC-CChhh--------CCC---CCCcC------
Confidence 3599998887654332221 22222223333 333444444443 22221 111 12232
Q ss_pred CcCchhHHHHHHHHHHHHHHHhhhcCccccc
Q 000849 153 EVLDITLGERITDLIHTAANVLDRNNLVKYG 183 (1254)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~ 183 (1254)
.+-+..|+..|...|.|..+
T Consensus 380 -----------~~~i~~a~~~L~~lgald~~ 399 (819)
T TIGR01970 380 -----------SVALAAARQLLQRLGALDAQ 399 (819)
T ss_pred -----------HHHHHHHHHHHHHCCCCCCC
Confidence 23477899999999998543
No 215
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.14 E-value=4.6e-06 Score=97.64 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
.+.++|..+-+.|++|.-.|||||.-.|.|+++|...+|| .|| -|-++.+|.+++||.||.|.. |.++
T Consensus 375 ~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI----nyd------fP~~vEdYVHRiGRTGRa~~~--G~A~ 442 (519)
T KOG0331|consen 375 KSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI----NYD------FPNNVEDYVHRIGRTGRAGKK--GTAI 442 (519)
T ss_pred ccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE----eCC------CCCCHHHHHhhcCccccCCCC--ceEE
Confidence 3678999999999999999999999999999999999999 477 467799999999999998776 9999
Q ss_pred EEecCCcHH
Q 000849 81 IITGHSELQ 89 (1254)
Q Consensus 81 i~~~~~~~~ 89 (1254)
.+.+..+..
T Consensus 443 tfft~~~~~ 451 (519)
T KOG0331|consen 443 TFFTSDNAK 451 (519)
T ss_pred EEEeHHHHH
Confidence 998775433
No 216
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.10 E-value=6.1e-06 Score=90.47 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.+-|.-.-+.|++|+-.||+||..-++|.|.|...||| -|| .|.+..||.+++||.||.| ..|.+|
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV----NyD------iP~~skDYIHRvGRtaRaG--rsG~~I 401 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV----NYD------IPTHSKDYIHRVGRTARAG--RSGKAI 401 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE----ecC------CCCcHHHHHHHcccccccC--CCcceE
Confidence 5778888899999999999999999999999999999999 477 6788999999999999999 459999
Q ss_pred EEecCCcHHHHHHh
Q 000849 81 IITGHSELQYYLSL 94 (1254)
Q Consensus 81 i~~~~~~~~~~~~~ 94 (1254)
-+.++-+.+.|.++
T Consensus 402 tlVtqyDve~~qrI 415 (476)
T KOG0330|consen 402 TLVTQYDVELVQRI 415 (476)
T ss_pred EEEehhhhHHHHHH
Confidence 99888888877764
No 217
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.09 E-value=6.9e-06 Score=93.69 Aligned_cols=79 Identities=28% Similarity=0.505 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+...+=+.|++|...||||||.-..|+|+|....|| +|+| --|.-.+.|+.||.||. ..|.++
T Consensus 409 MsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi----fYEp------vpSeIR~IQR~GRTGR~---r~Grv~ 475 (542)
T COG1111 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI----FYEP------VPSEIRSIQRKGRTGRK---RKGRVV 475 (542)
T ss_pred cCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE----EecC------CcHHHHHHHhhCccccC---CCCeEE
Confidence 6677778888899999999999999999999999999999 6874 24677889999999994 559999
Q ss_pred EEecCC--cHHHHH
Q 000849 81 IITGHS--ELQYYL 92 (1254)
Q Consensus 81 i~~~~~--~~~~~~ 92 (1254)
++...+ +..+|.
T Consensus 476 vLvt~gtrdeayy~ 489 (542)
T COG1111 476 VLVTEGTRDEAYYY 489 (542)
T ss_pred EEEecCchHHHHHH
Confidence 987764 444554
No 218
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.08 E-value=1.6e-05 Score=83.39 Aligned_cols=129 Identities=21% Similarity=0.222 Sum_probs=71.7
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v 532 (1254)
.+..|+..++++.....+++.||.|+|||+++....++.+.. +.-. +++|+-|..+... ..
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~--kiii~Rp~v~~~~----------------~l 65 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-GEYD--KIIITRPPVEAGE----------------DL 65 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-S--EEEEEE-S--TT-------------------
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCc--EEEEEecCCCCcc----------------cc
Confidence 355777777777777788889999999999999999988877 4555 8999988865311 12
Q ss_pred EEeccccc---------------------cchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCc
Q 000849 533 VELTVETA---------------------MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 591 (1254)
Q Consensus 533 ~~~~g~~~---------------------~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g 591 (1254)
+.+.|+.. .-...+++..|-+..+.-+ |. + .++ -.+||+|||+.+.
T Consensus 66 GflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----RG---r-t~~-~~~iIvDEaQN~t---- 132 (205)
T PF02562_consen 66 GFLPGDLEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI----RG---R-TFD-NAFIIVDEAQNLT---- 132 (205)
T ss_dssp -SS---------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----TT------B--SEEEEE-SGGG------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----cC---c-ccc-ceEEEEecccCCC----
Confidence 22222211 1112334556666665433 21 1 122 3899999999776
Q ss_pred cHHHHHHHHHHHHHhhcCCCcEEEEecC
Q 000849 592 PVLEVIVARMRYIASQVENKIRIVALST 619 (1254)
Q Consensus 592 ~~~e~~~~~l~~~~~~~~~~~rii~lSA 619 (1254)
...++.+....+.+.++|++--
T Consensus 133 ------~~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 133 ------PEELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp ------HHHHHHHHTTB-TT-EEEEEE-
T ss_pred ------HHHHHHHHcccCCCcEEEEecC
Confidence 3445555555677888888753
No 219
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.08 E-value=5.7e-06 Score=98.48 Aligned_cols=76 Identities=26% Similarity=0.500 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+++++..|-+.|++|.++|||||+..+.|||.|..+|+| .+|++. +..+...|.-||.||.+.. ++|+
T Consensus 517 m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV----Ie~AER-----FGLaQLHQLRGRVGRG~~q--SyC~ 585 (677)
T COG1200 517 MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV----IENAER-----FGLAQLHQLRGRVGRGDLQ--SYCV 585 (677)
T ss_pred CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE----Eechhh-----hhHHHHHHhccccCCCCcc--eEEE
Confidence 6789999999999999999999999999999999999988 566543 6799999999999998777 9999
Q ss_pred EEecCCc
Q 000849 81 IITGHSE 87 (1254)
Q Consensus 81 i~~~~~~ 87 (1254)
+++....
T Consensus 586 Ll~~~~~ 592 (677)
T COG1200 586 LLYKPPL 592 (677)
T ss_pred EEeCCCC
Confidence 9998754
No 220
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.06 E-value=9.1e-06 Score=101.01 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
++..+|..+.+.|++|.++|+|||+.|+.|+++|...+|| .+|.+.-+ .+-+...|.|++|||||. ..|.++
T Consensus 476 ~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVv----i~DadifG-~p~~~~~~iqriGRagR~---~~G~vi 547 (655)
T TIGR00631 476 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDADKEG-FLRSERSLIQTIGRAARN---VNGKVI 547 (655)
T ss_pred CCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEE----EeCccccc-CCCCHHHHHHHhcCCCCC---CCCEEE
Confidence 3567899999999999999999999999999999988555 23322211 345788999999999997 359999
Q ss_pred EEecCCc
Q 000849 81 IITGHSE 87 (1254)
Q Consensus 81 i~~~~~~ 87 (1254)
++++...
T Consensus 548 ~~~~~~~ 554 (655)
T TIGR00631 548 MYADKIT 554 (655)
T ss_pred EEEcCCC
Confidence 9988643
No 221
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.04 E-value=8.4e-06 Score=94.45 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
+..+|..+-+.||.|.|.||+||..|+.|+++-..+.||. || .|-+...|.+++||.||+|.. |.+|.
T Consensus 423 ~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD------~p~s~~syihrIGRtgRag~~--g~Ait 490 (593)
T KOG0344|consen 423 SQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YD------FPQSDLSYIHRIGRTGRAGRS--GKAIT 490 (593)
T ss_pred chhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cC------CCchhHHHHHHhhccCCCCCC--cceEE
Confidence 5678999999999999999999999999999999999995 77 566788999999999999887 99999
Q ss_pred EecCCcHHHHH
Q 000849 82 ITGHSELQYYL 92 (1254)
Q Consensus 82 ~~~~~~~~~~~ 92 (1254)
+.++.+..+..
T Consensus 491 fytd~d~~~ir 501 (593)
T KOG0344|consen 491 FYTDQDMPRIR 501 (593)
T ss_pred Eeccccchhhh
Confidence 98886665444
No 222
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.99 E-value=1.1e-05 Score=101.04 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+|..+.+.|++|.+.|+|||..|+.|+++|...+|| .+|.+..+ -+-+...|.||+|||||. ..|.++
T Consensus 480 ~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVi----i~d~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i 551 (652)
T PRK05298 480 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVA----ILDADKEG-FLRSERSLIQTIGRAARN---VNGKVI 551 (652)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEE----EeCCcccc-cCCCHHHHHHHhccccCC---CCCEEE
Confidence 3567899999999999999999999999999999987665 23322211 245788999999999995 359999
Q ss_pred EEecC
Q 000849 81 IITGH 85 (1254)
Q Consensus 81 i~~~~ 85 (1254)
++++.
T Consensus 552 ~~~~~ 556 (652)
T PRK05298 552 LYADK 556 (652)
T ss_pred EEecC
Confidence 99884
No 223
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.99 E-value=4.9e-06 Score=89.90 Aligned_cols=75 Identities=24% Similarity=0.371 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHH-----------------
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQ----------------- 63 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~q----------------- 63 (1254)
|.|+||.-+.+.|..|.|+|+|||-+++|||+.|..+.||. . ..+-|+..|.|
T Consensus 351 lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih----h------sl~ksienyyqasarillrmtkqknksd 420 (695)
T KOG0353|consen 351 LEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH----H------SLPKSIENYYQASARILLRMTKQKNKSD 420 (695)
T ss_pred cCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe----c------ccchhHHHHHHHHHHHHHHHhhhccccc
Confidence 57889999999999999999999999999999999999993 1 26778899999
Q ss_pred --------------------------HhcccCCCCCCCcceEEEEecCCc
Q 000849 64 --------------------------MLGRAGRPQYDSYGEGIIITGHSE 87 (1254)
Q Consensus 64 --------------------------m~GRAGR~~~~~~g~~~i~~~~~~ 87 (1254)
..|||||.+.. ..+|+...-.+
T Consensus 421 tggstqinilevctnfkiffavfsekesgragrd~~~--a~cilyy~~~d 468 (695)
T KOG0353|consen 421 TGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK--ADCILYYGFAD 468 (695)
T ss_pred CCCcceeehhhhhccceeeeeeecchhccccccCCCc--ccEEEEechHH
Confidence 88999998776 77887766544
No 224
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.98 E-value=1.3e-05 Score=86.70 Aligned_cols=75 Identities=24% Similarity=0.412 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEE
Q 000849 3 RGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 82 (1254)
Q Consensus 3 ~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~ 82 (1254)
..+|...=++||+|++++|++|+.|++||.+|...|.+-|..+ .-++-+...||+||+||.-.-..|.++.+
T Consensus 341 d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh--------~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 341 DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEH--------RVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCc--------ccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 3568888899999999999999999999999999999976433 34788999999999999777677888777
Q ss_pred ecC
Q 000849 83 TGH 85 (1254)
Q Consensus 83 ~~~ 85 (1254)
-..
T Consensus 413 H~G 415 (441)
T COG4098 413 HYG 415 (441)
T ss_pred ecc
Confidence 544
No 225
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.97 E-value=3.7e-05 Score=95.42 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=60.1
Q ss_pred HHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccC--CCCccccCCHHHHHHHhcccCCCCCCCcceEEEEecC
Q 000849 8 LVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNP--EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 85 (1254)
Q Consensus 8 ~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~--~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~~ 85 (1254)
.+++.|++|..+|||||+..+.||++|..++||-.-..+.| ..|...++|..+|.||+|||||. ..|.++-+.+.
T Consensus 437 ~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~ 513 (675)
T PHA02653 437 ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDL 513 (675)
T ss_pred HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECH
Confidence 34555589999999999999999999999999954322222 23333457999999999999997 35999999876
Q ss_pred Cc
Q 000849 86 SE 87 (1254)
Q Consensus 86 ~~ 87 (1254)
.+
T Consensus 514 ~~ 515 (675)
T PHA02653 514 DL 515 (675)
T ss_pred HH
Confidence 55
No 226
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.96 E-value=2.6e-05 Score=99.41 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEec-C---ccccCCCCc----cccCCHHHHHHHhcccCCCC
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKG-T---QVYNPEKGA----WTELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~-~---~~~~~~~~~----~~~~~~~~~~qm~GRAGR~~ 72 (1254)
|+.++|..+-..|++|..+|||||+..+.||++|..++||-. . ..||+..|. ...+|-.++.|++|||||.
T Consensus 249 l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~- 327 (812)
T PRK11664 249 LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL- 327 (812)
T ss_pred CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-
Confidence 577888888889999999999999999999999999999952 2 358887762 2357889999999999997
Q ss_pred CCCcceEEEEecCCcHHHHHHhhcCCCC--chhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCC
Q 000849 73 YDSYGEGIIITGHSELQYYLSLMNQQLP--IESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGL 150 (1254)
Q Consensus 73 ~~~~g~~~i~~~~~~~~~~~~~~~~~~~--i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~ 150 (1254)
..|.+|-+.+..+ |..+...+.| ..+ .|...++...+.|. .+..+ |-| ...|.
T Consensus 328 --~~G~cyrL~t~~~---~~~l~~~~~PEI~r~----dL~~~~L~l~~~g~-~~~~~--------~~~---ld~P~---- 382 (812)
T PRK11664 328 --EPGICLHLYSKEQ---AERAAAQSEPEILHS----DLSGLLLELLQWGC-HDPAQ--------LSW---LDQPP---- 382 (812)
T ss_pred --CCcEEEEecCHHH---HhhCccCCCCceecc----chHHHHHHHHHcCC-CCHHh--------CCC---CCCCC----
Confidence 2599999887544 3333322222 223 34444444445553 33322 211 12232
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHhhhcCccccc
Q 000849 151 SPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183 (1254)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~ 183 (1254)
..-+.+|+..|...|.|..+
T Consensus 383 -------------~~~~~~A~~~L~~lgald~~ 402 (812)
T PRK11664 383 -------------AAALAAAKRLLQQLGALDGQ 402 (812)
T ss_pred -------------HHHHHHHHHHHHHCCCCCCC
Confidence 23578899999999998643
No 227
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.94 E-value=1.7e-05 Score=90.33 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|.-+-+.|+.-.=.||.||...|+|++||....|| -|| .|.++.||.+++||..|.|.. |.++
T Consensus 481 m~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vV----QYd------~P~s~adylHRvGRTARaG~k--G~al 548 (708)
T KOG0348|consen 481 MEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVV----QYD------PPFSTADYLHRVGRTARAGEK--GEAL 548 (708)
T ss_pred hhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEE----EeC------CCCCHHHHHHHhhhhhhccCC--CceE
Confidence 6789999999999888888999999999999999999999 477 478899999999999999988 9999
Q ss_pred EEecCCcHHHHHHhhcCC
Q 000849 81 IITGHSELQYYLSLMNQQ 98 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~ 98 (1254)
++....+.+ |.+.+...
T Consensus 549 LfL~P~Eae-y~~~l~~~ 565 (708)
T KOG0348|consen 549 LFLLPSEAE-YVNYLKKH 565 (708)
T ss_pred EEecccHHH-HHHHHHhh
Confidence 999988877 77665443
No 228
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.92 E-value=4.6e-05 Score=83.37 Aligned_cols=133 Identities=20% Similarity=0.154 Sum_probs=91.6
Q ss_pred hhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcc
Q 000849 447 RKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK 526 (1254)
Q Consensus 447 ~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~ 526 (1254)
+.+.+.|.+.|--..-.+..+ .+++..||-|||+++.+|+.-.... +. .|=+++...-||..=++.+...|..
T Consensus 72 r~~g~~p~~vQll~~l~L~~G--~laEm~TGEGKTli~~l~a~~~AL~---G~--~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 72 RTLGLRPYDVQLLGALALHKG--RLAEMKTGEGKTLIAALPAALNALQ---GK--GVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HHTS----HHHHHHHHHHHTT--SEEEESTTSHHHHHHHHHHHHHHTT---SS---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcccHHHHhhhhhcccc--eeEEecCCCCcHHHHHHHHHHHHHh---cC--CcEEEeccHHHhhccHHHHHHHHHH
Confidence 456666777776666666433 4888999999999998887655554 44 7888899999999988888887765
Q ss_pred ccCcEEEEeccccccch-hhcccCcEEEEcHhhH-HHHHHh-hhcc---cccceeeEEEeccccccc
Q 000849 527 ELGMCVVELTVETAMDL-KLLEKGQIIISTPEKW-DALSRR-WKQR---KYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 527 ~~~~~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l-~~l~~~-~~~~---~~l~~v~liIiDEaH~l~ 587 (1254)
+|++++..+++..... +..-.++|+++|...+ .+.+|. .... .......++||||+|.+.
T Consensus 145 -LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 -LGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -TT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred -hhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 5999999998876443 3334679999999987 233333 2221 135688999999999665
No 229
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.91 E-value=0.0041 Score=72.67 Aligned_cols=295 Identities=13% Similarity=0.114 Sum_probs=165.8
Q ss_pred CcEEEEEcchHHHHHHHHHHHHHhhccc------------cCc--------EE------------EEeccccccc-----
Q 000849 500 VMRAVYIAPIEALAKQRYCDWERKFGKE------------LGM--------CV------------VELTVETAMD----- 542 (1254)
Q Consensus 500 ~~~vl~i~P~r~La~q~~~~~~~~~~~~------------~~~--------~v------------~~~~g~~~~~----- 542 (1254)
.|+||+++|+|..|.++++.+.+.+... .|. .. ..+.|..+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 4799999999999998888777655441 110 00 0111211111
Q ss_pred ---h------hhcccCcEEEEcHhhHHHHHHh----hhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHh---
Q 000849 543 ---L------KLLEKGQIIISTPEKWDALSRR----WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIAS--- 606 (1254)
Q Consensus 543 ---~------~~~~~~~Iiv~Tpe~l~~l~~~----~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~--- 606 (1254)
. ...-++|||||+|=-|..++.. .....+++.+.++|+|.+|.+.- ..|+.+..-+..+..
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M---QNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM---QNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH---hhHHHHHHHHHHhccCCC
Confidence 0 1123569999999877555553 22344799999999999997762 122222222222211
Q ss_pred -----------------hcCCCcEEEEecCCCCCh-HHH-HHhhcCCCCeeEecCCC--------CcccccEEEEeeccC
Q 000849 607 -----------------QVENKIRIVALSTSLANA-KDL-GEWIGASSHGVFNFPPG--------VRPVPLEIQIQGVDI 659 (1254)
Q Consensus 607 -----------------~~~~~~rii~lSATl~~~-~~l-~~~l~~~~~~~~~~~~~--------~r~v~l~~~~~~~~~ 659 (1254)
+...-.|.|++|+..... ..+ ...+....+.+ .+... .-.+++.+.+..++.
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v-~~~~~~~~~g~i~~v~~~v~Q~F~r~~~ 272 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKV-RLKPPYEASGVISQVVVQVRQVFQRFDC 272 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceE-EEeeccccceeeeccccCCceEEEEecC
Confidence 111247899999886321 111 11121111111 11111 112233344444333
Q ss_pred C----ChHHHHHhhCHHHHHHHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcCh
Q 000849 660 T----NFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE 735 (1254)
Q Consensus 660 ~----~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 735 (1254)
. ....++....+.++..+... ...+.+|||++|--+=..+-..|.+ .
T Consensus 273 ~s~~~~~d~Rf~yF~~~iLP~l~~~-~~~~~~LIfIPSYfDfVRlRN~lk~----~------------------------ 323 (442)
T PF06862_consen 273 SSPADDPDARFKYFTKKILPQLKRD-SKMSGTLIFIPSYFDFVRLRNYLKK----E------------------------ 323 (442)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhc-cCCCcEEEEecchhhhHHHHHHHHh----c------------------------
Confidence 2 23445555556666666532 5678899999997665555444431 1
Q ss_pred HHHHHHhhccceeecCCCCHHHHHHHHHHHhcCCceEEEeCcccc--cccCCc--ceeecccccCCHH---HHHHhhccc
Q 000849 736 EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMC--WEVPLT--AHLATGRKMLILT---TLLQMMGHA 808 (1254)
Q Consensus 736 ~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~--~Gvdip--~~~V~~~~~~s~~---~~~Qr~GRa 808 (1254)
....+.+|.-.+..+-.+.-..|.+|+.+||+-|.=+- +-..+. -++|-+..|..+. +++.+++..
T Consensus 324 -------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~ 396 (442)
T PF06862_consen 324 -------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDES 396 (442)
T ss_pred -------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccc
Confidence 23466788888999999999999999999999995322 223333 3566777775554 444444443
Q ss_pred CC-CCCCCCceEEEEccCCcHHHHHHh
Q 000849 809 GR-PLLDNSEKCVILCHAPHKEYYKKF 834 (1254)
Q Consensus 809 GR-~g~d~~G~~iil~~~~~~~~~~~~ 834 (1254)
.. .+....+.|.++++.-+.-..+++
T Consensus 397 ~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 397 SGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred ccccccccCceEEEEecHhHHHHHHHH
Confidence 32 111235788888886555444444
No 230
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.88 E-value=2.5e-05 Score=90.07 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
+..+|...-+.|++|.+.|||||+..|+|+|+|.+.-|| .|| .|-...+|.+++||.||.|.- |.++.
T Consensus 372 tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVI----nyD------mP~d~d~YvHRIGRTGR~Gn~--G~ats 439 (482)
T KOG0335|consen 372 TQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVI----NYD------MPADIDDYVHRIGRTGRVGNG--GRATS 439 (482)
T ss_pred hhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeE----Eee------cCcchhhHHHhccccccCCCC--ceeEE
Confidence 356888899999999999999999999999999887777 477 566799999999999999988 99999
Q ss_pred EecCC
Q 000849 82 ITGHS 86 (1254)
Q Consensus 82 ~~~~~ 86 (1254)
+.+..
T Consensus 440 f~n~~ 444 (482)
T KOG0335|consen 440 FFNEK 444 (482)
T ss_pred Eeccc
Confidence 88743
No 231
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.87 E-value=6.4e-05 Score=96.30 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHhC--CCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcce
Q 000849 1 MKRGDRQLVEDLFCD--GHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 78 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~--g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~ 78 (1254)
|+..+|..+-+.|++ |..+|||||...+.|+|++..+.|| .|| .|-++..|.|++||+||.|.. |.
T Consensus 528 ~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VI----nfD------lP~nP~~~eQRIGR~~RiGQ~--~~ 595 (956)
T PRK04914 528 MSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLV----LFD------LPFNPDLLEQRIGRLDRIGQK--HD 595 (956)
T ss_pred CCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEE----Eec------CCCCHHHHHHHhcccccCCCC--ce
Confidence 678899999999987 4699999999999999999887777 477 678899999999999999998 44
Q ss_pred EEEEe--cCC-cHHHHHHh-------hcCCCCchhhHHHHHHHHHHHHHHhc
Q 000849 79 GIIIT--GHS-ELQYYLSL-------MNQQLPIESQFVSKLAELLNAEIVLG 120 (1254)
Q Consensus 79 ~~i~~--~~~-~~~~~~~~-------~~~~~~i~s~l~~~l~~~l~~~i~~~ 120 (1254)
+.|.. ..+ ..+....+ +....|--..+...+.+.|...+...
T Consensus 596 V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~~~l~~~l~~~ 647 (956)
T PRK04914 596 IQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFGDELIPYLASP 647 (956)
T ss_pred EEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHHHHHHHHHhCC
Confidence 44443 222 22222222 22333433355555556666555433
No 232
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.87 E-value=4.3e-05 Score=99.36 Aligned_cols=142 Identities=15% Similarity=0.238 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEec----CccccCCCCc----cccCCHHHHHHHhcccCCCC
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKG----TQVYNPEKGA----WTELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~----~~~~~~~~~~----~~~~~~~~~~qm~GRAGR~~ 72 (1254)
|+.++|..+.+. .|..+|||||+..+.||++|..++||-. ..+||+..+. ..++|...|.|++|||||.+
T Consensus 323 Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~ 400 (1294)
T PRK11131 323 LSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS 400 (1294)
T ss_pred CCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC
Confidence 566778777654 6889999999999999999999999952 2568877652 23467789999999999973
Q ss_pred CCCcceEEEEecCCcHHHHHHh--hcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCC
Q 000849 73 YDSYGEGIIITGHSELQYYLSL--MNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGL 150 (1254)
Q Consensus 73 ~~~~g~~~i~~~~~~~~~~~~~--~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~ 150 (1254)
.|.+|-+.+.++ |.++ ...|+-..+ .|...++...+.|. .+. .+ |.| ...|.
T Consensus 401 ---~G~c~rLyte~d---~~~~~~~~~PEIlR~----~L~~viL~lk~lgl-~di---~~-----F~f---ldpP~---- 454 (1294)
T PRK11131 401 ---EGICIRLYSEDD---FLSRPEFTDPEILRT----NLASVILQMTALGL-GDI---AA-----FPF---VEAPD---- 454 (1294)
T ss_pred ---CcEEEEeCCHHH---HHhhhcccCCccccC----CHHHHHHHHHHcCC-CCc---ce-----eeC---CCCCC----
Confidence 599998877544 3332 223332333 34444555555553 222 11 222 22332
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHhhhcCccccc
Q 000849 151 SPEVLDITLGERITDLIHTAANVLDRNNLVKYG 183 (1254)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~ 183 (1254)
.+-|..+++.|.+.|.|..+
T Consensus 455 -------------~~~i~~al~~L~~LgAld~~ 474 (1294)
T PRK11131 455 -------------KRNIQDGVRLLEELGAITTD 474 (1294)
T ss_pred -------------HHHHHHHHHHHHHCCCCCcc
Confidence 34588999999999999654
No 233
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.4e-05 Score=84.30 Aligned_cols=89 Identities=29% Similarity=0.428 Sum_probs=73.7
Q ss_pred ChhHHHHHHHHHHHccccccCccccccC-----cHHHHHHHHHHHHHhc---Cc---------HHHHHHHHHHHHHHHhc
Q 000849 215 EPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKR---GW---------SQLAEKALKLSKMVTKR 277 (1254)
Q Consensus 215 ~~~~Kv~~Llq~~is~~~~~~~~l~~D~-----~a~ri~~a~~ei~~~~---~~---------~~~a~~~l~l~~~i~~~ 277 (1254)
..+.|..+||++|+||++++.-+|..|. .+.|+++-|+-+...+ .+ -..-.++++|+.|+.+|
T Consensus 66 pYslKaRvlLhahLsRmpl~~dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQg 145 (520)
T KOG4434|consen 66 PYSLKARVLLHAHLSRMPLESDTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQG 145 (520)
T ss_pred chhHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHH
Confidence 5678999999999999999877888886 7888888777754322 11 23346789999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHhcC
Q 000849 278 MWSVQTPLRQFNGIPNEILMKLEKKD 303 (1254)
Q Consensus 278 ~w~~~~~L~q~~~i~~~~~~~l~~~~ 303 (1254)
+|...+||.|+|||.++.++++.++.
T Consensus 146 LwqfkSPLLQLPHitednL~~~~KKr 171 (520)
T KOG4434|consen 146 LWQFKSPLLQLPHITEDNLQHLRKKR 171 (520)
T ss_pred HHHhcChhhcCCccchHHHHHHhhhc
Confidence 99999999999999999999998765
No 234
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.0005 Score=84.90 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=83.0
Q ss_pred HHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecc
Q 000849 458 QRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTV 537 (1254)
Q Consensus 458 ~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g 537 (1254)
-+++-.+.-+.--+.-.-||-|||+++.+|+.-.... ++ .+-+++..-=||.--+....+.+.- +|++|+....
T Consensus 84 VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gk--gVhvVTvNdYLA~RDae~m~~l~~~-LGlsvG~~~~ 157 (822)
T COG0653 84 VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GK--GVHVVTVNDYLARRDAEWMGPLYEF-LGLSVGVILA 157 (822)
T ss_pred HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CC--CcEEeeehHHhhhhCHHHHHHHHHH-cCCceeeccC
Confidence 3445555455555667999999999999998643333 44 5777777777877766666665554 5999999888
Q ss_pred ccccchh-hcccCcEEEEcHhhH--HHHHHh---hhcccccceeeEEEeccccccc
Q 000849 538 ETAMDLK-LLEKGQIIISTPEKW--DALSRR---WKQRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 538 ~~~~~~~-~~~~~~Iiv~Tpe~l--~~l~~~---~~~~~~l~~v~liIiDEaH~l~ 587 (1254)
+.....+ ..=.+||.++|-..| |.+-.+ ...........+.|+||++.+.
T Consensus 158 ~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 158 GMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred CCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 8765533 334579999998775 222111 1222345568889999999654
No 235
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.84 E-value=8.4e-05 Score=93.53 Aligned_cols=146 Identities=14% Similarity=0.176 Sum_probs=84.6
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHH-----Hhhcccc-C--cEEEEec
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE-----RKFGKEL-G--MCVVELT 536 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~-----~~~~~~~-~--~~v~~~~ 536 (1254)
.....+.+.++||+|||.+|+-.|+..... .+..+.|++||+.|+-..+.+-+. ..|.... | +....+.
T Consensus 57 ~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 57 DDKANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred CccceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 445678899999999999999888877665 223389999999998776655433 2333211 2 3333333
Q ss_pred ccc---------ccchhhc--------ccCcEEEEcHhhHHHH-H-Hhhh------cc-ccc---ce-eeEEEecccccc
Q 000849 537 VET---------AMDLKLL--------EKGQIIISTPEKWDAL-S-RRWK------QR-KYV---QQ-VSLFIIDELHLI 586 (1254)
Q Consensus 537 g~~---------~~~~~~~--------~~~~Iiv~Tpe~l~~l-~-~~~~------~~-~~l---~~-v~liIiDEaH~l 586 (1254)
+.. ....+.. ..-.|+|+|.+.|..- . +... .. ..+ .. =-.||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 322 0110101 1248999999988431 1 1110 00 111 11 147999999999
Q ss_pred cCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 000849 587 GGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623 (1254)
Q Consensus 587 ~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~ 623 (1254)
... +..++. +..+ .+.-++..|||.++
T Consensus 214 ~~~-~k~~~~----i~~l-----npl~~lrysAT~~~ 240 (986)
T PRK15483 214 PRD-NKFYQA----IEAL-----KPQMIIRFGATFPD 240 (986)
T ss_pred Ccc-hHHHHH----HHhc-----CcccEEEEeeecCC
Confidence 642 223322 2222 23446779999976
No 236
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.79 E-value=0.00015 Score=94.95 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHhCC-CCcEEEechhhhhhcCccceEEEEec----CccccCCCCc----cccCCHHHHHHHhcccCCC
Q 000849 1 MKRGDRQLVEDLFCDG-HVQVLVSTANLAWGVNLPAHTVIIKG----TQVYNPEKGA----WTELSPLDIMQMLGRAGRP 71 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g-~i~vl~~T~tl~~Gvnlp~~~vii~~----~~~~~~~~~~----~~~~~~~~~~qm~GRAGR~ 71 (1254)
|+.++|..+ |+.+ .-+||+||+..+.||++|..++||-. ...||+..|. ..++|..++.|++|||||.
T Consensus 316 Ls~~eQ~~v---f~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~ 392 (1283)
T TIGR01967 316 LSNKEQQRV---FQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 392 (1283)
T ss_pred CCHHHHHHH---hCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCC
Confidence 566777666 6544 46999999999999999999999953 2568877652 1357889999999999998
Q ss_pred CCCCcceEEEEecCCcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCC
Q 000849 72 QYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLS 151 (1254)
Q Consensus 72 ~~~~~g~~~i~~~~~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~ 151 (1254)
| .|.+|-+.+..+.+... ....|+-..+ .|...++...+.|. .+.. .|.| ...|.
T Consensus 393 ~---~G~cyRLyte~~~~~~~-~~~~PEIlR~----~L~~viL~l~~lg~-~di~--------~f~f---ldpP~----- 447 (1283)
T TIGR01967 393 A---PGICIRLYSEEDFNSRP-EFTDPEILRT----NLASVILQMLALRL-GDIA--------AFPF---IEAPD----- 447 (1283)
T ss_pred C---CceEEEecCHHHHHhhh-hccCcccccc----cHHHHHHHHHhcCC-CCcc--------cccC---CCCCC-----
Confidence 7 59998887754432211 1233333333 34444555555553 2221 1222 12222
Q ss_pred CCcCchhHHHHHHHHHHHHHHHhhhcCccccc
Q 000849 152 PEVLDITLGERITDLIHTAANVLDRNNLVKYG 183 (1254)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~ 183 (1254)
.+-+..|+..|...|.|..+
T Consensus 448 ------------~~~i~~A~~~L~~LGAld~~ 467 (1283)
T TIGR01967 448 ------------PRAIRDGFRLLEELGALDDD 467 (1283)
T ss_pred ------------HHHHHHHHHHHHHCCCCCCC
Confidence 34588999999999999644
No 237
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.77 E-value=4.9e-05 Score=85.57 Aligned_cols=82 Identities=23% Similarity=0.439 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|....|..+-..|++-.-.||+||...|+|+++|....|| .||| |-.+..|.+++||+||.|-. |.++
T Consensus 291 ~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~Vv----Q~Dp------P~~~~~FvHR~GRTaR~gr~--G~Ai 358 (567)
T KOG0345|consen 291 MSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVV----QFDP------PKDPSSFVHRCGRTARAGRE--GNAI 358 (567)
T ss_pred hcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEE----ecCC------CCChhHHHhhcchhhhccCc--cceE
Confidence 3456799999999998889999999999999999999999 5885 45588999999999999987 9999
Q ss_pred EEecCCcHHHHHHhh
Q 000849 81 IITGHSELQYYLSLM 95 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~ 95 (1254)
++..+.+ +.|..++
T Consensus 359 vfl~p~E-~aYveFl 372 (567)
T KOG0345|consen 359 VFLNPRE-EAYVEFL 372 (567)
T ss_pred EEecccH-HHHHHHH
Confidence 9988744 5677765
No 238
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.77 E-value=2.4e-05 Score=99.91 Aligned_cols=80 Identities=25% Similarity=0.394 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccC-CHHHHHHHhcccCCCCCCCcceE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTEL-SPLDIMQMLGRAGRPQYDSYGEG 79 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~-~~~~~~qm~GRAGR~~~~~~g~~ 79 (1254)
|++++|..+|..|++|.+.++++|++|..||++..-.++|.. | .|. +..+++|++|||||++.. +..
T Consensus 348 ~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~--------g--~P~~s~~~~~Q~~GRaGR~~~~--~l~ 415 (851)
T COG1205 348 LHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAY--------G--YPGVSVLSFRQRAGRAGRRGQE--SLV 415 (851)
T ss_pred CCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhc--------C--CCCchHHHHHHhhhhccCCCCC--ceE
Confidence 578999999999999999999999999999999998888831 2 355 889999999999999944 788
Q ss_pred EEEecCCcHHHHH
Q 000849 80 IIITGHSELQYYL 92 (1254)
Q Consensus 80 ~i~~~~~~~~~~~ 92 (1254)
+++...+-.+.|.
T Consensus 416 ~~v~~~~~~d~yy 428 (851)
T COG1205 416 LVVLRSDPLDSYY 428 (851)
T ss_pred EEEeCCCccchhh
Confidence 8887765555444
No 239
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.77 E-value=0.00034 Score=85.77 Aligned_cols=84 Identities=12% Similarity=-0.035 Sum_probs=67.6
Q ss_pred hccceeecCCCCHHHHHHHHHHHhcC---CceEEEeCcccccccCCc-c-eeecccccCCHHHHHHhhcccCCCCCCCCc
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFEAG---KIKVCVMSSSMCWEVPLT-A-HLATGRKMLILTTLLQMMGHAGRPLLDNSE 817 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~~g---~~~VLVaT~~l~~Gvdip-~-~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G 817 (1254)
.+.-..+.|....++|-..++.|... -...|.+|...+.|+|+. + .+|.++...++....|+.-||-|.|.....
T Consensus 750 ~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~ev 829 (1157)
T KOG0386|consen 750 EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEV 829 (1157)
T ss_pred hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhhe
Confidence 34455678889999999999999764 356788999999999999 4 455888888999999999999999986666
Q ss_pred eEEEEccCC
Q 000849 818 KCVILCHAP 826 (1254)
Q Consensus 818 ~~iil~~~~ 826 (1254)
.++.+.+-.
T Consensus 830 Rv~rl~tv~ 838 (1157)
T KOG0386|consen 830 RVLRLITVN 838 (1157)
T ss_pred eeeeeehhh
Confidence 666666543
No 240
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.76 E-value=5.1e-05 Score=83.45 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEE
Q 000849 3 RGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 82 (1254)
Q Consensus 3 ~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~ 82 (1254)
..||+..-+.|++|.+++||||.....|+++|..+-|+ -|| -|..+.+|.+++||.||.|.. |.++-+
T Consensus 501 Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~----NyD------FP~nIeeYVHRvGrtGRaGr~--G~sis~ 568 (629)
T KOG0336|consen 501 QSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY----NYD------FPRNIEEYVHRVGRTGRAGRT--GTSISF 568 (629)
T ss_pred hhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceee----ccC------CCccHHHHHHHhcccccCCCC--cceEEE
Confidence 46888889999999999999999999999999998888 466 477899999999999999988 777777
Q ss_pred ecCCcHHHHH
Q 000849 83 TGHSELQYYL 92 (1254)
Q Consensus 83 ~~~~~~~~~~ 92 (1254)
.+.++.....
T Consensus 569 lt~~D~~~a~ 578 (629)
T KOG0336|consen 569 LTRNDWSMAE 578 (629)
T ss_pred EehhhHHHHH
Confidence 6665544333
No 241
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.75 E-value=6.5e-05 Score=85.14 Aligned_cols=85 Identities=16% Similarity=0.327 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+.++|-..-+.|+++.|+||+||..-+.|++++..-+|| -|+ +|.+...|++++||..|.|.. |.+|
T Consensus 460 LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI----Ny~------mP~t~e~Y~HRVGRTARAGRa--GrsV 527 (691)
T KOG0338|consen 460 LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI----NYA------MPKTIEHYLHRVGRTARAGRA--GRSV 527 (691)
T ss_pred ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE----ecc------CchhHHHHHHHhhhhhhcccC--cceE
Confidence 6788999999999999999999999999999999999999 354 788999999999999888887 9999
Q ss_pred EEecCCcHHHHHHhhcC
Q 000849 81 IITGHSELQYYLSLMNQ 97 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~ 97 (1254)
-++..++....+..+.+
T Consensus 528 tlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 528 TLVGESDRKLLKEIIKS 544 (691)
T ss_pred EEeccccHHHHHHHHhh
Confidence 99988877666665554
No 242
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=97.74 E-value=5.7e-05 Score=86.39 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|....|..|-.-|.+..--||+||...|+|+++||..+||. || +|-.+.+|.+++||..|.+.+ |+++
T Consensus 349 ~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~D------CPedv~tYIHRvGRtAR~~~~--G~sl 416 (758)
T KOG0343|consen 349 MSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VD------CPEDVDTYIHRVGRTARYKER--GESL 416 (758)
T ss_pred hhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ec------CchhHHHHHHHhhhhhcccCC--CceE
Confidence 45677888999999999999999999999999999999993 55 677899999999999997555 9999
Q ss_pred EEecCCcHHHHHHhhcCC
Q 000849 81 IITGHSELQYYLSLMNQQ 98 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~ 98 (1254)
++..+++.+.+.+.+...
T Consensus 417 l~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 417 LMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred EEEcchhHHHHHHHHHHc
Confidence 999998877766655443
No 243
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.72 E-value=0.00013 Score=80.20 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=42.3
Q ss_pred hHHHHHHhhCCccee-eeeeccCCCchHHHHHHHHHHHHH-----hhcCCCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 455 PAKQRITAALPNIIL-VLQLAPTGSGKTICAEFAILRNHQ-----RASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 455 ~~Q~~~~~~i~~~~~-viv~apTGsGKT~~~~l~il~~l~-----~~~~~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
+.|++++...-.... .++.||.|+|||....-.+...+. ....++ ++++++|+...++++.+++.+
T Consensus 4 ~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~--~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 4 ESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK--KILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS---EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccc--cceeecCCchhHHHHHHHHHh
Confidence 345555544433333 677899999999665544433311 113445 999999999999999999887
No 244
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.69 E-value=0.00019 Score=80.88 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=115.5
Q ss_pred chHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCC-----cceeeeeeccCCCchHHHH
Q 000849 410 PSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALP-----NIILVLQLAPTGSGKTICA 484 (1254)
Q Consensus 410 ~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~-----~~~~viv~apTGsGKT~~~ 484 (1254)
++.+.+|..+++-+|+-.+... ..+.+++. +.++|+|.+.=+- ...--|+.-.-|.|||..+
T Consensus 155 pE~~~v~~dlde~~p~i~e~ae----qP~dlii~---------LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQt 221 (791)
T KOG1002|consen 155 PELRNVFTDLDEANPVIAERAE----QPDDLIIP---------LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQT 221 (791)
T ss_pred chhhhhhhhhhhcCchhhhccc----Ccccceec---------chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHH
Confidence 4455555555555554333322 12223333 5667777665442 1112344578899999887
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccc-cchhhcccCcEEEEcHhhHHHHH
Q 000849 485 EFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA-MDLKLLEKGQIIISTPEKWDALS 563 (1254)
Q Consensus 485 ~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~-~~~~~~~~~~Iiv~Tpe~l~~l~ 563 (1254)
.-.++.. ..+. ..++++|+.||. |..+++..... ...++..++|... .+.+.+.+.|++++|+..+.+..
T Consensus 222 IaLllae----~~ra--~tLVvaP~VAlm-QW~nEI~~~T~--gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~y 292 (791)
T KOG1002|consen 222 IALLLAE----VDRA--PTLVVAPTVALM-QWKNEIERHTS--GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVY 292 (791)
T ss_pred HHHHHhc----cccC--CeeEEccHHHHH-HHHHHHHHhcc--CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHH
Confidence 6555542 2233 689999999985 55666665333 2578888888754 45667888999999999987777
Q ss_pred Hhhhc-----------ccccce--eeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC-Ch----H
Q 000849 564 RRWKQ-----------RKYVQQ--VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA-NA----K 625 (1254)
Q Consensus 564 ~~~~~-----------~~~l~~--v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~-~~----~ 625 (1254)
|+... ...+.+ +.-||+||||.+-+ |.......+.-++ ..+..++|.|+- |. -
T Consensus 293 Rk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~-R~snTArAV~~L~--------tt~rw~LSGTPLQNrigEly 363 (791)
T KOG1002|consen 293 RKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKD-RQSNTARAVFALE--------TTYRWCLSGTPLQNRIGELY 363 (791)
T ss_pred HhccccccccCCcccccchhhhceeeeeehhhhccccc-ccccHHHHHHhhH--------hhhhhhccCCcchhhHHHHH
Confidence 66211 112333 45699999999984 3333333333332 234478888863 21 2
Q ss_pred HHHHhhcCCC
Q 000849 626 DLGEWIGASS 635 (1254)
Q Consensus 626 ~l~~~l~~~~ 635 (1254)
.+.+||...+
T Consensus 364 SLiRFL~i~P 373 (791)
T KOG1002|consen 364 SLIRFLNINP 373 (791)
T ss_pred HHHHHHccCc
Confidence 3445555543
No 245
>PRK13766 Hef nuclease; Provisional
Probab=97.69 E-value=6.5e-05 Score=97.70 Aligned_cols=73 Identities=29% Similarity=0.499 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+|..+-+.|++|.++|||||+.++.|+|+|..++|| .||+ +.+...|.|++||+||.|. |.++
T Consensus 407 ~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI----~yd~------~~s~~r~iQR~GR~gR~~~---~~v~ 473 (773)
T PRK13766 407 MSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVI----FYEP------VPSEIRSIQRKGRTGRQEE---GRVV 473 (773)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE----EeCC------CCCHHHHHHHhcccCcCCC---CEEE
Confidence 4567888899999999999999999999999999999888 5774 4578899999999999754 7788
Q ss_pred EEecCC
Q 000849 81 IITGHS 86 (1254)
Q Consensus 81 i~~~~~ 86 (1254)
++...+
T Consensus 474 ~l~~~~ 479 (773)
T PRK13766 474 VLIAKG 479 (773)
T ss_pred EEEeCC
Confidence 777653
No 246
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.65 E-value=0.00017 Score=90.28 Aligned_cols=256 Identities=15% Similarity=0.137 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCc---cceE-----EEEecCccccCCCCccccCCHHHHHHHhcccCCCCC
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNL---PAHT-----VIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQY 73 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnl---p~~~-----vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~ 73 (1254)
...+|..+..+++.| +|+|||+..++|+|+ |... .|| .|+ .|-+...|.|++||+||.|.
T Consensus 463 ~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI----~~d------~p~s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 463 AAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVI----GTE------RMESRRVDLQLRGRSGRQGD 530 (790)
T ss_pred cHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEE----ecc------CCCCHHHHHHhhccccCCCC
Confidence 456778888888877 799999999999999 5765 666 233 56778999999999999887
Q ss_pred CCcceEEEEecCCc-H---------HHHHHhhcC-----CCCchhhHHHHHHHHHHHHHHhcccc------ChHHHHHHH
Q 000849 74 DSYGEGIIITGHSE-L---------QYYLSLMNQ-----QLPIESQFVSKLAELLNAEIVLGTVQ------NAKEACNWI 132 (1254)
Q Consensus 74 ~~~g~~~i~~~~~~-~---------~~~~~~~~~-----~~~i~s~l~~~l~~~l~~~i~~~~~~------~~~~~~~~l 132 (1254)
. |.++.+.+..+ + ..+.+.+.. ..|+++.....+.+....-+-..... ..++.++.=
T Consensus 531 ~--G~s~~~is~eD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aQ~~~e~~~~~~R~~~~~~d~~~~~Q 608 (790)
T PRK09200 531 P--GSSQFFISLEDDLLKRFAPEELEKLKKKLKTDAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQ 608 (790)
T ss_pred C--eeEEEEEcchHHHHHhhccHHHHHHHHHcCCccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 88888776422 1 123223322 34788877665555443333222222 233333333
Q ss_pred hhcceeEeeccCCcccCCCCCcCchhHHHHHHHHHHHHHHHhhhcCcccccCccCceeeccc--HHHHH-HHhccCCccC
Q 000849 133 EYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKI--KMELA-KLLDRVPIPV 209 (1254)
Q Consensus 133 ~~t~~~~~~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t~e--~~~l~-~l~~~~~~~~ 209 (1254)
+..++..|- -- +.. ++..+.+...++++..+..+.+....... . + ++ ...+. .+....+ ..
T Consensus 609 R~~iy~~R~---~~---l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~-~~~~~~~~~~~~~~~~~-~~ 672 (790)
T PRK09200 609 RDVVYKERN---RL---LEE--DDRDLIDIVILMIDVYLEAVAEEYLLEKS---L---L-EEWIYENLSFQLNEILS-NT 672 (790)
T ss_pred HHHHHHHHH---HH---HhC--CCcCHHHHHHHHHHHHHHHHHHHhcCCcc---C---h-hhhcHHHHHHHHHHHhc-cc
Confidence 333332221 00 000 10123344445555555554443221100 0 0 00 11111 1111111 11
Q ss_pred CCCCCChhHHHHHHHHHHHccccccCccccccCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCcccccC
Q 000849 210 KESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFN 289 (1254)
Q Consensus 210 ~~~~~~~~~Kv~~Llq~~is~~~~~~~~l~~D~~a~ri~~a~~ei~~~~~~~~~a~~~l~l~~~i~~~~w~~~~~L~q~~ 289 (1254)
.. ......| ..|.+..........-.+..+.....+.|.++=-+.-..|-.....+-.|...|.-|...-..||..+.
T Consensus 673 ~~-~~~~~~~-~~l~~~~~~~y~~k~~~lg~e~~~~e~eR~i~L~~ID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYk 750 (790)
T PRK09200 673 NF-PDKKEVV-QFLLEEAEKQLKEKRNKLPSATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQ 750 (790)
T ss_pred cc-CCHHHHH-HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHH
Confidence 00 0111111 222222222221111112222123445555555566689999999999999999988888778887665
No 247
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=97.62 E-value=0.00012 Score=88.92 Aligned_cols=73 Identities=30% Similarity=0.518 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+.+.+=+.|++|.++||||||.-+.|+|+|..++|| .||- .-++....|+.|| ||. ..|+++
T Consensus 458 mtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI----cYd~------~snpIrmIQrrGR-gRa---~ns~~v 523 (746)
T KOG0354|consen 458 MTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI----CYDY------SSNPIRMVQRRGR-GRA---RNSKCV 523 (746)
T ss_pred cCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE----EecC------CccHHHHHHHhcc-ccc---cCCeEE
Confidence 5677888999999999999999999999999999999999 4773 2348889999999 995 569999
Q ss_pred EEecCCc
Q 000849 81 IITGHSE 87 (1254)
Q Consensus 81 i~~~~~~ 87 (1254)
++++...
T Consensus 524 ll~t~~~ 530 (746)
T KOG0354|consen 524 LLTTGSE 530 (746)
T ss_pred EEEcchh
Confidence 9998533
No 248
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.61 E-value=7.6e-05 Score=91.33 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEec-hhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVST-ANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 79 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T-~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~ 79 (1254)
|+.++|..+.+.|++|...||||| ..++.|+|+|...+||. ++|. -+...|.||+||+||++-+ ...+
T Consensus 378 ~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~------~s~~~~~QriGR~~R~~~~-K~~~ 446 (501)
T PHA02558 378 VDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPS------KSKIIVLQSIGRVLRKHGS-KSIA 446 (501)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCC------cchhhhhhhhhccccCCCC-CceE
Confidence 567899999999999999999999 79999999999777773 3332 2467899999999998664 3344
Q ss_pred EEE
Q 000849 80 III 82 (1254)
Q Consensus 80 ~i~ 82 (1254)
.|+
T Consensus 447 ~i~ 449 (501)
T PHA02558 447 TVW 449 (501)
T ss_pred EEE
Confidence 444
No 249
>PRK10536 hypothetical protein; Provisional
Probab=97.61 E-value=0.00011 Score=79.22 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=39.5
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHH
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEA 511 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~ 511 (1254)
.+..|...++.+.++..+++.||+|+|||+++....++.+.. ..-. ++++.-|...
T Consensus 60 ~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~--kIiI~RP~v~ 115 (262)
T PRK10536 60 RNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-KDVD--RIIVTRPVLQ 115 (262)
T ss_pred CCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCee--EEEEeCCCCC
Confidence 344666666666666677888999999999998777766644 2233 6777767654
No 250
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.60 E-value=0.00016 Score=84.46 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=51.8
Q ss_pred HHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe
Q 000849 456 AKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL 535 (1254)
Q Consensus 456 ~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~ 535 (1254)
.|..+++.+.+...-+++||+|+|||....--+++...+ ..+ +|++++|+...++|+++.+.+ .|++|..+
T Consensus 414 SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~--~VLvcApSNiAVDqLaeKIh~-----tgLKVvRl 484 (935)
T KOG1802|consen 414 SQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAG--PVLVCAPSNIAVDQLAEKIHK-----TGLKVVRL 484 (935)
T ss_pred HHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCC--ceEEEcccchhHHHHHHHHHh-----cCceEeee
Confidence 444455555455556777999999998876555554444 345 899999999999999988876 46776655
Q ss_pred c
Q 000849 536 T 536 (1254)
Q Consensus 536 ~ 536 (1254)
.
T Consensus 485 ~ 485 (935)
T KOG1802|consen 485 C 485 (935)
T ss_pred e
Confidence 4
No 251
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=97.60 E-value=0.00027 Score=80.45 Aligned_cols=79 Identities=24% Similarity=0.454 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
+...|..+-..|++-.--||+||..-|+|+|+|++..|+ -||+ |-.+.+|.+++||.||.|.. |++++
T Consensus 365 ~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~Vv----Q~~~------P~d~~~YIHRvGRTaR~gk~--G~alL 432 (543)
T KOG0342|consen 365 KQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVV----QYDP------PSDPEQYIHRVGRTAREGKE--GKALL 432 (543)
T ss_pred cccccchHHHHHhhcccceEEecchhhccCCCCCceEEE----EeCC------CCCHHHHHHHhccccccCCC--ceEEE
Confidence 345677888899999999999999999999999999999 3663 45699999999999997666 99999
Q ss_pred EecCCcHHHHH
Q 000849 82 ITGHSELQYYL 92 (1254)
Q Consensus 82 ~~~~~~~~~~~ 92 (1254)
+....++.+..
T Consensus 433 ~l~p~El~Flr 443 (543)
T KOG0342|consen 433 LLAPWELGFLR 443 (543)
T ss_pred EeChhHHHHHH
Confidence 99887765433
No 252
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.60 E-value=0.00011 Score=91.81 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCHHHHH-----HHHHHHhC----CC-------CcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHH
Q 000849 1 MKRGDRQ-----LVEDLFCD----GH-------VQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQM 64 (1254)
Q Consensus 1 l~~~~R~-----~ve~~f~~----g~-------i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm 64 (1254)
|+..+|. .+.+.|++ |. .+|||||..+++|||+|...||. + ..+...|.|+
T Consensus 304 m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~-----d--------~aP~esyIQR 370 (844)
T TIGR02621 304 LRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVC-----D--------LAPFESMQQR 370 (844)
T ss_pred CCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcceEEE-----C--------CCCHHHHHHH
Confidence 5678888 66778877 54 78999999999999999955554 1 2457899999
Q ss_pred hcccCCCCCCCcceEEEEec
Q 000849 65 LGRAGRPQYDSYGEGIIITG 84 (1254)
Q Consensus 65 ~GRAGR~~~~~~g~~~i~~~ 84 (1254)
+||+||.|....+.+++++.
T Consensus 371 iGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 371 FGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCCCCCCCceEEEEee
Confidence 99999999875555555543
No 253
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.56 E-value=0.00021 Score=77.80 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+|-..-..|+++.+++|+||...+.|.++|.+..||. || .|-+|.+|.+++||..|.|.. |.++
T Consensus 288 m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~d------iPr~P~~yiHRvGRtARAGR~--G~ai 355 (442)
T KOG0340|consen 288 MPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN----HD------IPRDPKDYIHRVGRTARAGRK--GMAI 355 (442)
T ss_pred chHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe----cC------CCCCHHHHHHhhcchhcccCC--cceE
Confidence 57788988999999999999999999999999999999993 55 677899999999999998887 8888
Q ss_pred EEecCCcHHHHH
Q 000849 81 IITGHSELQYYL 92 (1254)
Q Consensus 81 i~~~~~~~~~~~ 92 (1254)
=+.+..+.+...
T Consensus 356 Sivt~rDv~l~~ 367 (442)
T KOG0340|consen 356 SIVTQRDVELLQ 367 (442)
T ss_pred EEechhhHHHHH
Confidence 777776665444
No 254
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.54 E-value=0.00015 Score=82.81 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
..+||+.||...-.|++.-++||++|..||++..-..|+. -| -|+|...++|-+|||||...+ +.++.
T Consensus 568 ~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~--------~G--FP~S~aNl~QQ~GRAGRRNk~--SLavy 635 (1034)
T KOG4150|consen 568 IAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLH--------LG--FPGSIANLWQQAGRAGRRNKP--SLAVY 635 (1034)
T ss_pred chhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEE--------cc--CchhHHHHHHHhccccccCCC--ceEEE
Confidence 3579999999999999999999999999999998777773 13 489999999999999998877 66766
Q ss_pred EecC-CcHHHHH
Q 000849 82 ITGH-SELQYYL 92 (1254)
Q Consensus 82 ~~~~-~~~~~~~ 92 (1254)
++.. .-.++|.
T Consensus 636 va~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 636 VAFLGPVDQYYM 647 (1034)
T ss_pred EEeccchhhHhh
Confidence 6655 3334565
No 255
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.54 E-value=0.00019 Score=88.83 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHhCC-CCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCc
Q 000849 1 MKRGDRQLVEDLFCDG-HVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 76 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g-~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~ 76 (1254)
++..+|..+=+.|++| .+++||+|..++.|||+|..+|+|. +++.. =|..+|.||+||++|++.+..
T Consensus 525 ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~-----gS~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 525 TSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHY-----GSRRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCC-----CCHHHHHHHhcccccCCCCCc
Confidence 4678999999999875 8899999999999999999888883 44221 268999999999999987643
No 256
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.52 E-value=0.00059 Score=72.37 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=39.6
Q ss_pred CChHHHHHHhhCC--cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHH
Q 000849 453 RLPAKQRITAALP--NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCD 519 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~--~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~ 519 (1254)
+++.|++++..+- .....+++||.|+|||.+. -.+...+.. .+. ++++++||...+.+..+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--~g~--~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--AGK--RVIGLAPTNKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--TT----EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--CCC--eEEEECCcHHHHHHHHHh
Confidence 3455555555552 2346777899999999764 335555554 234 899999999888775444
No 257
>KOG4284 consensus DEAD box protein [Transcription]
Probab=97.50 E-value=0.00018 Score=83.78 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+|..+-+.++.-.++|||+|.-.|+||+-|..+.||. -| .|..-..|.+++|||||.|-. |.+|
T Consensus 306 M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD------~p~d~eTY~HRIGRAgRFG~~--G~aV 373 (980)
T KOG4284|consen 306 MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----ID------APADEETYFHRIGRAGRFGAH--GAAV 373 (980)
T ss_pred cchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cC------CCcchHHHHHHhhhccccccc--ceeE
Confidence 67889999999999999999999999999999999999993 23 456788999999999998876 9888
Q ss_pred EEecCC
Q 000849 81 IITGHS 86 (1254)
Q Consensus 81 i~~~~~ 86 (1254)
-++...
T Consensus 374 T~~~~~ 379 (980)
T KOG4284|consen 374 TLLEDE 379 (980)
T ss_pred EEeccc
Confidence 877653
No 258
>PF13245 AAA_19: Part of AAA domain
Probab=97.49 E-value=0.00029 Score=61.64 Aligned_cols=56 Identities=25% Similarity=0.237 Sum_probs=41.1
Q ss_pred hCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-cCCCCcEEEEEcchHHHHHHHHHHH
Q 000849 463 ALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDW 520 (1254)
Q Consensus 463 ~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-~~~~~~~vl~i~P~r~La~q~~~~~ 520 (1254)
++.++..++++||.|||||....-.+...+... ..++ ++++++|++..++++.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~--~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGK--RVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCC--eEEEECCCHHHHHHHHHHH
Confidence 333456677789999999977766665555321 2234 8999999999999988777
No 259
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.45 E-value=0.00058 Score=84.22 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=89.9
Q ss_pred CcChHHHHHHHH---HhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-c
Q 000849 421 LFNPIQTQVFAV---LYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-S 496 (1254)
Q Consensus 421 ~~~~~Q~~~~~~---~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-~ 496 (1254)
.++.+|..-++. +|+.+-|-++. -.-|-|||...+ .++.++... .
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILA------------------------------DEmGLGKTIQtI-SllAhLACeeg 663 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILA------------------------------DEMGLGKTIQTI-SLLAHLACEEG 663 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceeh------------------------------hhhcccchhHHH-HHHHHHHhccc
Confidence 677888877765 46666677777 899999998764 344444442 3
Q ss_pred CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch---hhccc---CcEEEEcHhhHHHHHHhhhccc
Q 000849 497 ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL---KLLEK---GQIIISTPEKWDALSRRWKQRK 570 (1254)
Q Consensus 497 ~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~---~~~~~---~~Iiv~Tpe~l~~l~~~~~~~~ 570 (1254)
+-| --+||+||-.+.+. ..+|++++. |+++..+.|...... +.+.+ .+|.|+++..+..-++...
T Consensus 664 nWG--PHLIVVpTsviLnW-EMElKRwcP---glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFk--- 734 (1958)
T KOG0391|consen 664 NWG--PHLIVVPTSVILNW-EMELKRWCP---GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFK--- 734 (1958)
T ss_pred CCC--CceEEeechhhhhh-hHHHhhhCC---cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHH---
Confidence 344 56888999776554 455665443 789999998765332 22322 3899999887622222221
Q ss_pred ccceeeEEEecccccccCCCccHHHHHH
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIV 598 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~ 598 (1254)
-.++.++|+||+|.+-.-....|+.++
T Consensus 735 -rkrWqyLvLDEaqnIKnfksqrWQAll 761 (1958)
T KOG0391|consen 735 -RKRWQYLVLDEAQNIKNFKSQRWQALL 761 (1958)
T ss_pred -hhccceeehhhhhhhcchhHHHHHHHh
Confidence 347889999999999865555555544
No 260
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.42 E-value=0.00029 Score=88.98 Aligned_cols=81 Identities=31% Similarity=0.444 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEE-ecCcc--ccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 4 GDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVII-KGTQV--YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 4 ~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii-~~~~~--~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
++|+.+-+.|++|.++|||+|.-++.|+|+|..++|+ -+... +.|.-.. .+-....|.|++|||||.+.+ |.++
T Consensus 467 ~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra-~Er~~~~l~q~~GRagR~~~~--g~vi 543 (679)
T PRK05580 467 GALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRA-SERTFQLLTQVAGRAGRAEKP--GEVL 543 (679)
T ss_pred hhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccch-HHHHHHHHHHHHhhccCCCCC--CEEE
Confidence 4677888999999999999999999999999988554 32211 0010000 112357899999999997655 9999
Q ss_pred EEecCCc
Q 000849 81 IITGHSE 87 (1254)
Q Consensus 81 i~~~~~~ 87 (1254)
|.|...+
T Consensus 544 iqT~~p~ 550 (679)
T PRK05580 544 IQTYHPE 550 (679)
T ss_pred EEeCCCC
Confidence 9997654
No 261
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.00027 Score=85.91 Aligned_cols=78 Identities=26% Similarity=0.375 Sum_probs=56.6
Q ss_pred HHHHHHHhCCCCcEEEechhhhhhcCccceEEE-EecCcc--ccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEEe
Q 000849 7 QLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVI-IKGTQV--YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 83 (1254)
Q Consensus 7 ~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vi-i~~~~~--~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~ 83 (1254)
+.+-+.|++|.++|||+|..++.|+|+|..+.| |-+... +.|+-. -.+-....|.|++|||||.+.. |+++|.|
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r-a~E~~~~ll~q~~GRagR~~~~--g~viiqt 378 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR-AAERGFQLLTQVAGRAGRAEDP--GQVIIQT 378 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccc-hHHHHHHHHHHHHhccCCCCCC--CEEEEEe
Confidence 567788999999999999999999999998744 433211 111100 0122457899999999997655 9999998
Q ss_pred cCCc
Q 000849 84 GHSE 87 (1254)
Q Consensus 84 ~~~~ 87 (1254)
...+
T Consensus 379 ~~p~ 382 (505)
T TIGR00595 379 YNPN 382 (505)
T ss_pred CCCC
Confidence 7654
No 262
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0037 Score=71.77 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=50.0
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEeCcccc--cccCCc--ceeecccccCC---HHHHHHhhcccCCCC--CCCCceEE
Q 000849 750 HEGLNKSDQEVVSTLFEAGKIKVCVMSSSMC--WEVPLT--AHLATGRKMLI---LTTLLQMMGHAGRPL--LDNSEKCV 820 (1254)
Q Consensus 750 h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~--~Gvdip--~~~V~~~~~~s---~~~~~Qr~GRaGR~g--~d~~G~~i 820 (1254)
|.-.+++.-.+.-+.|-.|..+||+-|.-+- +-.++. -.+|.|..|-. ..+++.|.+|+.-.| ..+...|.
T Consensus 583 ~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ 662 (698)
T KOG2340|consen 583 NEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVR 662 (698)
T ss_pred hhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEE
Confidence 3333444455667788999999999996432 344555 35567776643 378899999876444 33356777
Q ss_pred EEccCCc
Q 000849 821 ILCHAPH 827 (1254)
Q Consensus 821 il~~~~~ 827 (1254)
++++.-+
T Consensus 663 ilytKyD 669 (698)
T KOG2340|consen 663 ILYTKYD 669 (698)
T ss_pred EEeechh
Confidence 7776443
No 263
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.38 E-value=0.00071 Score=83.97 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCcc---------ceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCC
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLP---------AHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp---------~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~ 72 (1254)
...+|.++..+++.| +|+|||+..++|+++| ...||+. |+. |-...+ .|+.|||||.|
T Consensus 459 ~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit----~~~------ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 459 AAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT----ERM------ENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred hHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe----cCC------CCcHHH-HHhhhcccCCC
Confidence 456788888888888 7999999999999999 7788882 442 222344 99999999988
Q ss_pred CCCcceEEEEecCCc----------HHHHHHhhc--C----CCCchhhHHHHHHHHHH
Q 000849 73 YDSYGEGIIITGHSE----------LQYYLSLMN--Q----QLPIESQFVSKLAELLN 114 (1254)
Q Consensus 73 ~~~~g~~~i~~~~~~----------~~~~~~~~~--~----~~~i~s~l~~~l~~~l~ 114 (1254)
.. |.++.+.+..+ ...+.+.++ + ..||+|.+.....++..
T Consensus 526 ~~--G~s~~~is~eD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ 581 (762)
T TIGR03714 526 DP--GSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSKLKPSALFKRRFRKIVEKAQ 581 (762)
T ss_pred Cc--eeEEEEEccchhhhhhcchHHHHHHHHHcCCCcccccCcccccHHHHHHHHHHH
Confidence 77 88888876432 112223332 1 25788887665554433
No 264
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.34 E-value=0.00068 Score=83.06 Aligned_cols=70 Identities=20% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCCcEEEechhhhhhcCcc---ceE-----EEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCC
Q 000849 4 GDRQLVEDLFCDGHVQVLVSTANLAWGVNLP---AHT-----VIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 75 (1254)
Q Consensus 4 ~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp---~~~-----vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~ 75 (1254)
.+|.++...+..| +|+|||+..++|+|+| ... .|| .|+ .|-+...|.|++||+||.|-.
T Consensus 510 rE~~ii~~ag~~g--~VlVATdmAgRGtDI~l~~~V~~~GGLhVI----~~d------~P~s~r~y~hr~GRTGRqG~~- 576 (656)
T PRK12898 510 EEAAIVARAGQRG--RITVATNMAGRGTDIKLEPGVAARGGLHVI----LTE------RHDSARIDRQLAGRCGRQGDP- 576 (656)
T ss_pred HHHHHHHHcCCCC--cEEEEccchhcccCcCCccchhhcCCCEEE----EcC------CCCCHHHHHHhcccccCCCCC-
Confidence 4555565555554 7999999999999999 332 566 233 456788999999999999866
Q ss_pred cceEEEEecCCc
Q 000849 76 YGEGIIITGHSE 87 (1254)
Q Consensus 76 ~g~~~i~~~~~~ 87 (1254)
|.++.+.+..+
T Consensus 577 -G~s~~~is~eD 587 (656)
T PRK12898 577 -GSYEAILSLED 587 (656)
T ss_pred -eEEEEEechhH
Confidence 99988877533
No 265
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.30 E-value=0.0089 Score=79.50 Aligned_cols=84 Identities=14% Similarity=-0.020 Sum_probs=71.4
Q ss_pred ccceeecCCCCHHHHHHHHHHHhcC--CceEEEeCcccccccCCc-c-eeecccccCCHHHHHHhhcccCCCCCCCCceE
Q 000849 744 LGVGYLHEGLNKSDQEVVSTLFEAG--KIKVCVMSSSMCWEVPLT-A-HLATGRKMLILTTLLQMMGHAGRPLLDNSEKC 819 (1254)
Q Consensus 744 ~~v~~~h~~l~~~~R~~v~~~F~~g--~~~VLVaT~~l~~Gvdip-~-~~V~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~ 819 (1254)
.....++|+++..+|...++.|.++ ..-.+++|.+.+.|+|+- + +++.++...++....|...||-|.|+...-.+
T Consensus 736 ~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v 815 (866)
T COG0553 736 IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKV 815 (866)
T ss_pred CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEE
Confidence 5688899999999999999999986 556677788999999999 4 45588888999999999999999998777778
Q ss_pred EEEccCCc
Q 000849 820 VILCHAPH 827 (1254)
Q Consensus 820 iil~~~~~ 827 (1254)
+.+...+.
T Consensus 816 ~r~i~~~t 823 (866)
T COG0553 816 YRLITRGT 823 (866)
T ss_pred EEeecCCc
Confidence 87777665
No 266
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0056 Score=71.42 Aligned_cols=148 Identities=14% Similarity=0.196 Sum_probs=75.1
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh-------c
Q 000849 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL-------L 546 (1254)
Q Consensus 474 apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-------~ 546 (1254)
+.||||||++..-.|+....++ -..-++.|.......-....+..-.....-.+-....+|.....+. -
T Consensus 4 matgsgkt~~ma~lil~~y~kg----yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG----YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc----hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 7999999999888888776661 1245666665554444333332211100000001111222221111 1
Q ss_pred ccCcEEEEcHhhHHH-HHHhhhccc---ccceeeE-EEecccccccCC-Cc---------cHHHHHHHHHHHHHhhcCCC
Q 000849 547 EKGQIIISTPEKWDA-LSRRWKQRK---YVQQVSL-FIIDELHLIGGQ-GG---------PVLEVIVARMRYIASQVENK 611 (1254)
Q Consensus 547 ~~~~Iiv~Tpe~l~~-l~~~~~~~~---~l~~v~l-iIiDEaH~l~~~-~g---------~~~e~~~~~l~~~~~~~~~~ 611 (1254)
..-.|.++|.+.|-. +.+...+.. .+.+..+ ++-||+|++... .+ ..++.. ++....+ .++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~---v~la~~~-nkd 155 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESV---VKLALEQ-NKD 155 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHH---HHHHHhc-CCC
Confidence 223799999999843 443322211 3444454 466999999852 11 122222 1212222 455
Q ss_pred cEEEEecCCCCChHHHHH
Q 000849 612 IRIVALSTSLANAKDLGE 629 (1254)
Q Consensus 612 ~rii~lSATl~~~~~l~~ 629 (1254)
--++.+|||++...++..
T Consensus 156 ~~~lef~at~~k~k~v~~ 173 (812)
T COG3421 156 NLLLEFSATIPKEKSVED 173 (812)
T ss_pred ceeehhhhcCCccccHHH
Confidence 667788999985444443
No 267
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00063 Score=75.45 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|...+|..+-+.|++|..+||+.|.-+|.|+|+-....|| -|+ .|-....|..++|||||.|.. |.++
T Consensus 297 ~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi----nyd------lP~~~~~yihR~gr~gr~grk--g~~i 364 (397)
T KOG0327|consen 297 MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV----NYD------LPARKENYIHRIGRAGRFGRK--GVAI 364 (397)
T ss_pred cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee----eec------cccchhhhhhhcccccccCCC--ceee
Confidence 4567899999999999999999999999999999988888 466 455688999999999999988 9999
Q ss_pred EEecCCcHHHHH
Q 000849 81 IITGHSELQYYL 92 (1254)
Q Consensus 81 i~~~~~~~~~~~ 92 (1254)
-+++.++.....
T Consensus 365 n~v~~~d~~~lk 376 (397)
T KOG0327|consen 365 NFVTEEDVRDLK 376 (397)
T ss_pred eeehHhhHHHHH
Confidence 998876654443
No 268
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.12 E-value=0.0027 Score=67.33 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=74.5
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEecccccc--ch---
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAM--DL--- 543 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~--~~--- 543 (1254)
..+.+.-.|.|||.+. +|++..... +++ .-+.+++| ++|..|..+.+..+++...+.++..+.-+... +.
T Consensus 43 n~v~QlnMGeGKTsVI-~Pmla~~LA--dg~-~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~ 117 (229)
T PF12340_consen 43 NSVMQLNMGEGKTSVI-VPMLALALA--DGS-RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETL 117 (229)
T ss_pred CeEeeecccCCccchH-HHHHHHHHc--CCC-cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHH
Confidence 4455699999999876 677766665 122 25666666 57999999999999998888777766543322 11
Q ss_pred --------hhcccCcEEEEcHhhHHHHHHhhh----------------cccccceeeEEEeccccccc
Q 000849 544 --------KLLEKGQIIISTPEKWDALSRRWK----------------QRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 544 --------~~~~~~~Iiv~Tpe~l~~l~~~~~----------------~~~~l~~v~liIiDEaH~l~ 587 (1254)
.......|+++|||.+.++.-... ...++.+..-=|+||+|.+.
T Consensus 118 ~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 118 EKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 122456899999998644321110 01134455667899998655
No 269
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=97.12 E-value=0.00062 Score=74.61 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
..+||...=++|+.|+-+|||||....-|.++|+..-|| -|| +|-.+..|.+++||.||.|.. |.+.-
T Consensus 456 DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVI----NyD------MP~eIENYVHRIGRTGRsg~~--GiATT 523 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVI----NYD------MPEEIENYVHRIGRTGRSGKT--GIATT 523 (610)
T ss_pred chhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhc----cCC------ChHHHHHHHHHhcccCCCCCc--ceeee
Confidence 357899999999999999999999999999999988888 476 567799999999999999877 76665
Q ss_pred EecC
Q 000849 82 ITGH 85 (1254)
Q Consensus 82 ~~~~ 85 (1254)
+.+.
T Consensus 524 fINK 527 (610)
T KOG0341|consen 524 FINK 527 (610)
T ss_pred eecc
Confidence 5544
No 270
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.12 E-value=0.003 Score=77.89 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=73.7
Q ss_pred hHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcC-CCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEE
Q 000849 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASE-TGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV 533 (1254)
Q Consensus 455 ~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~-~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~ 533 (1254)
+.|++++...-.+...++.|+.|+|||++..- ++..+....+ .+..++++.+||---|..+.+......... +..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l-~~~-- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL-AAA-- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc-ccc--
Confidence 34555555555556677779999999986533 2232322111 112489999999888777666655433221 110
Q ss_pred EeccccccchhhcccCcEEEEcHhhHHHHHHh---h-hcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcC
Q 000849 534 ELTVETAMDLKLLEKGQIIISTPEKWDALSRR---W-KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVE 609 (1254)
Q Consensus 534 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~---~-~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~ 609 (1254)
.+ ......+-..|-.+|...... . ........+++|||||+-++. +..+..+.+..+
T Consensus 224 ---~~------~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----------~~l~~~ll~al~ 284 (586)
T TIGR01447 224 ---EA------LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----------LPLMAKLLKALP 284 (586)
T ss_pred ---hh------hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----------HHHHHHHHHhcC
Confidence 00 000001123343333211110 0 001123368999999999877 222333333346
Q ss_pred CCcEEEEec
Q 000849 610 NKIRIVALS 618 (1254)
Q Consensus 610 ~~~rii~lS 618 (1254)
...|+|++-
T Consensus 285 ~~~rlIlvG 293 (586)
T TIGR01447 285 PNTKLILLG 293 (586)
T ss_pred CCCEEEEEC
Confidence 788888875
No 271
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.09 E-value=0.0014 Score=81.67 Aligned_cols=255 Identities=15% Similarity=0.157 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEechhhhhhcCcc---ceE-----EEEecCccccCCCCccccCCHHHHHHHhcccCCCCCC
Q 000849 3 RGDRQLVEDLFCDGHVQVLVSTANLAWGVNLP---AHT-----VIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYD 74 (1254)
Q Consensus 3 ~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp---~~~-----vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~ 74 (1254)
..++.+|-++++.|. |+|||+..++|.+++ ... .||- | ..+-+...+.|+.|||||.|-.
T Consensus 476 ~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~-t---------e~pes~ri~~Ql~GRtGRqG~~ 543 (796)
T PRK12906 476 AKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG-T---------ERHESRRIDNQLRGRSGRQGDP 543 (796)
T ss_pred HHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe-e---------ecCCcHHHHHHHhhhhccCCCC
Confidence 467888999999996 999999999999995 444 5551 1 2467789999999999998877
Q ss_pred CcceEEEEecCC-cHH------HHHHhh------cCCCCchhhHHHHHHHHHHHHHHhcccc------ChHHHHHHHhhc
Q 000849 75 SYGEGIIITGHS-ELQ------YYLSLM------NQQLPIESQFVSKLAELLNAEIVLGTVQ------NAKEACNWIEYT 135 (1254)
Q Consensus 75 ~~g~~~i~~~~~-~~~------~~~~~~------~~~~~i~s~l~~~l~~~l~~~i~~~~~~------~~~~~~~~l~~t 135 (1254)
|.+..+.+-+ ++- ...+++ .+..||++.+.....+....-+-..... ..+++++.=+..
T Consensus 544 --G~s~~~~sleD~l~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~ 621 (796)
T PRK12906 544 --GSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREV 621 (796)
T ss_pred --cceEEEEeccchHHHhhCcHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8888877643 211 222222 2346899988776555544333222222 234444444444
Q ss_pred ceeEeeccCCcccCCCCCcCchhHHHHHHHHHHHHHHHhhhcCcccccCccCceeecccHHHHHH-HhccCCc----cCC
Q 000849 136 YLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAK-LLDRVPI----PVK 210 (1254)
Q Consensus 136 ~~~~~~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t~e~~~l~~-l~~~~~~----~~~ 210 (1254)
++..|-. - +. .++.+.+...++++.++..+.+.- ...+++. -+...|.. +...+++ ...
T Consensus 622 iY~~R~~---i---l~---~~~~l~~~i~~~~~~~i~~~i~~~-~~~~~~~------w~~~~L~~~l~~~~~~~~~~~~~ 685 (796)
T PRK12906 622 IYKQRMQ---V---IN---EDKDLKEVLMPMIKRTVDRQVQMY-TQGDKKD------WDLDALRDFIVSAMPDEETFDFE 685 (796)
T ss_pred HHHHHHH---H---Hc---CCccHHHHHHHHHHHHHHHHHHHh-cCCChhh------ccHHHHHHHHHHHcCcccCCCHH
Confidence 4333310 0 00 111234444455555555544432 1111000 01112222 1112211 110
Q ss_pred CCCC-C-hhHHHHHHHHHHHccccccCcccc-ccCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCcccc
Q 000849 211 ESLE-E-PSAKINVLLQTYISQLKLEGLSLT-SDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQ 287 (1254)
Q Consensus 211 ~~~~-~-~~~Kv~~Llq~~is~~~~~~~~l~-~D~~a~ri~~a~~ei~~~~~~~~~a~~~l~l~~~i~~~~w~~~~~L~q 287 (1254)
.-.. . ...| ..|............-.+. .+ ....+.|.++=-+.-..|......+-.|...|.-|...-.-||..
T Consensus 686 ~~~~~~~eel~-~~L~~~~~~~Y~~K~~~lg~~e-~~~~~eR~i~L~~ID~~W~eHL~~md~LRegI~LR~ygQkDPl~E 763 (796)
T PRK12906 686 DLKGKSPEELK-KRLLDIVEDNYAEKEKQLGDPT-QMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVE 763 (796)
T ss_pred HHccCCHHHHH-HHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCHHHH
Confidence 0000 1 1111 1111111111111110112 22 233344444444556789999999999999998888877778776
Q ss_pred cC
Q 000849 288 FN 289 (1254)
Q Consensus 288 ~~ 289 (1254)
+.
T Consensus 764 Yk 765 (796)
T PRK12906 764 YQ 765 (796)
T ss_pred HH
Confidence 65
No 272
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.09 E-value=0.00083 Score=85.23 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|+..+=+.|-..|-+|..+|||||+..+-|||+|..+.||- .+. .-+..++..|+-||.||...- |+||
T Consensus 839 M~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~A-----D~fGLsQLyQLRGRVGRS~~~--AYAY 907 (1139)
T COG1197 839 MRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII----ERA-----DKFGLAQLYQLRGRVGRSNKQ--AYAY 907 (1139)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE----ecc-----ccccHHHHHHhccccCCccce--EEEE
Confidence 56677778889999999999999999999999998877773 221 236799999999999998655 9999
Q ss_pred EEecCC
Q 000849 81 IITGHS 86 (1254)
Q Consensus 81 i~~~~~ 86 (1254)
+++.++
T Consensus 908 fl~p~~ 913 (1139)
T COG1197 908 FLYPPQ 913 (1139)
T ss_pred EeecCc
Confidence 999863
No 273
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.08 E-value=0.003 Score=77.97 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=74.9
Q ss_pred hHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEE
Q 000849 455 PAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE 534 (1254)
Q Consensus 455 ~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~ 534 (1254)
+.|++++.....+...++.|++|+|||++..- ++..+.+.......++++++||.--|..+.+......... +.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~-~~---- 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQL-PL---- 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcc-cc----
Confidence 45555555555556677779999999987532 2223322111222478999999988887776665433221 11
Q ss_pred eccccccchhhcccCcEEEEcHhhHHHHHHhh----hcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCC
Q 000849 535 LTVETAMDLKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVEN 610 (1254)
Q Consensus 535 ~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~ 610 (1254)
..+.. .....-..|-.+|....... ......-..+++||||+-++. +..+..+.+..+.
T Consensus 229 -~~~~~------~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----------~~lm~~ll~al~~ 291 (615)
T PRK10875 229 -TDEQK------KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----------LPMMARLIDALPP 291 (615)
T ss_pred -chhhh------hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----------HHHHHHHHHhccc
Confidence 00000 00011123333332111000 011123356899999999876 2233333344567
Q ss_pred CcEEEEec
Q 000849 611 KIRIVALS 618 (1254)
Q Consensus 611 ~~rii~lS 618 (1254)
+.|+|++.
T Consensus 292 ~~rlIlvG 299 (615)
T PRK10875 292 HARVIFLG 299 (615)
T ss_pred CCEEEEec
Confidence 88988876
No 274
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.07 E-value=0.0033 Score=61.90 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=56.5
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEE-cchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYI-APIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i-~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 544 (1254)
+...+++.||+|+|||.+....+-...........+.++++ +|...-.......+...++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 34567888999999998876554433221100012244443 444332344455555444322000
Q ss_pred hcccCcEEEEcHhhH-HHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCC
Q 000849 545 LLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSAT 620 (1254)
-.++..+ ..+.+..... ...+|||||+|.+. . ...+..++.+.. ..++++|+.+.+
T Consensus 69 --------~~~~~~l~~~~~~~l~~~----~~~~lviDe~~~l~--~----~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 --------RQTSDELRSLLIDALDRR----RVVLLVIDEADHLF--S----DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp --------TS-HHHHHHHHHHHHHHC----TEEEEEEETTHHHH--T----HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred --------cCCHHHHHHHHHHHHHhc----CCeEEEEeChHhcC--C----HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 1122222 2222222111 22799999999974 1 334555555543 456666665543
No 275
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.06 E-value=0.00078 Score=69.50 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=73.7
Q ss_pred cCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHH
Q 000849 683 NEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVS 762 (1254)
Q Consensus 683 ~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~ 762 (1254)
..+.++||++|.+..+.+...+..... ..++..+.. ...++..++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~---------------------------------~~~~~v~~q--~~~~~~~~l 52 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE---------------------------------EKGIPVFVQ--GSKSRDELL 52 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----------------------------------ETSCEEES--TCCHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc---------------------------------cccceeeec--CcchHHHHH
Confidence 458899999999988888765422110 112333333 366788999
Q ss_pred HHHhcCCceEEEeCc--ccccccCCc---ceee-ccccc------------------------------CCHHHHHHhhc
Q 000849 763 TLFEAGKIKVCVMSS--SMCWEVPLT---AHLA-TGRKM------------------------------LILTTLLQMMG 806 (1254)
Q Consensus 763 ~~F~~g~~~VLVaT~--~l~~Gvdip---~~~V-~~~~~------------------------------~s~~~~~Qr~G 806 (1254)
+.|+++.-.||+|+. .+++|||+| +..| ....| .-...+.|.+|
T Consensus 53 ~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~G 132 (167)
T PF13307_consen 53 EEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIG 132 (167)
T ss_dssp HHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcC
Confidence 999999999999998 999999999 2223 11111 12245689999
Q ss_pred ccCCCCCCCCceEEEEccCCcHHHHHHhh
Q 000849 807 HAGRPLLDNSEKCVILCHAPHKEYYKKFL 835 (1254)
Q Consensus 807 RaGR~g~d~~G~~iil~~~~~~~~~~~~l 835 (1254)
|+-|... +.|..+++-..-....|.+.+
T Consensus 133 R~iR~~~-D~g~i~llD~R~~~~~y~~~l 160 (167)
T PF13307_consen 133 RLIRSED-DYGVIILLDSRFLSKRYGKYL 160 (167)
T ss_dssp CC--STT--EEEEEEESGGGGGHHHHHH-
T ss_pred cceeccC-CcEEEEEEcCccccchhhhcC
Confidence 9999885 478888776654444454443
No 276
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.05 E-value=0.0035 Score=79.70 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=42.8
Q ss_pred cccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 449 LMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 449 ~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
..|.+.+.|++++..+..+...++.|+.|+|||++. -.++..+.. .++...+++++||-..|..
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~--~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEE--LGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHH--cCCCceEEEEeCchHHHHH
Confidence 345566666666666655667788899999999865 344444444 1211378899999877654
No 277
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.03 E-value=0.0047 Score=67.95 Aligned_cols=138 Identities=22% Similarity=0.174 Sum_probs=84.6
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEE
Q 000849 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIII 553 (1254)
Q Consensus 474 apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv 553 (1254)
-.||.||.....-.|+..+.+. .+ ++|++..+..|-....++|+. ++.. .+.+..+..-...+... .+..|++
T Consensus 69 DGtGvGKGR~iAgiI~~n~l~G--r~--r~vwvS~s~dL~~Da~RDl~D-IG~~-~i~v~~l~~~~~~~~~~-~~~GvlF 141 (303)
T PF13872_consen 69 DGTGVGKGRQIAGIILENWLRG--RK--RAVWVSVSNDLKYDAERDLRD-IGAD-NIPVHPLNKFKYGDIIR-LKEGVLF 141 (303)
T ss_pred cCCCcCccchhHHHHHHHHHcC--CC--ceEEEECChhhhhHHHHHHHH-hCCC-cccceechhhccCcCCC-CCCCccc
Confidence 7899999988777778777761 22 799999999999999999986 4432 33333332211111111 1346999
Q ss_pred EcHhhHHHHHHhh---hcc-----ccc--ceeeEEEecccccccCC-C----ccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 554 STPEKWDALSRRW---KQR-----KYV--QQVSLFIIDELHLIGGQ-G----GPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 554 ~Tpe~l~~l~~~~---~~~-----~~l--~~v~liIiDEaH~l~~~-~----g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
+|+-.|..-.+.. ..+ .++ ..=.+||+||+|..... . +......+..+... -++.|++.+|
T Consensus 142 ~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~----LP~ARvvY~S 217 (303)
T PF13872_consen 142 STYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNR----LPNARVVYAS 217 (303)
T ss_pred hhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHh----CCCCcEEEec
Confidence 9998874443210 011 011 12369999999988762 2 12333334444333 2578899999
Q ss_pred CCCC
Q 000849 619 TSLA 622 (1254)
Q Consensus 619 ATl~ 622 (1254)
||-.
T Consensus 218 ATga 221 (303)
T PF13872_consen 218 ATGA 221 (303)
T ss_pred cccc
Confidence 9953
No 278
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.99 E-value=0.0012 Score=77.21 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=60.4
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcc
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLE 547 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 547 (1254)
.+++|.|..|||||+++.-.+.. +.....+. +++++++..+|...+...+.+.....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~-l~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~~~~~-------------------- 58 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKE-LQNSEEGK--KVLYLCGNHPLRNKLREQLAKKYNPK-------------------- 58 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHH-hhccccCC--ceEEEEecchHHHHHHHHHhhhcccc--------------------
Confidence 46788999999999988654443 32112344 89999999999988777776533000
Q ss_pred cCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC
Q 000849 548 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 588 (1254)
Q Consensus 548 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~ 588 (1254)
.....+..+..+..-.. ........+++|||||||++..
T Consensus 59 ~~~~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 01222333333311111 1123467899999999999986
No 279
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=96.96 E-value=0.0013 Score=75.75 Aligned_cols=97 Identities=22% Similarity=0.364 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEE
Q 000849 3 RGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 82 (1254)
Q Consensus 3 ~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~ 82 (1254)
...|-.--+-|++..-.||+||...|+|+++|...-|| +|. .|=+..-|.++.||..|.+.+ |.++++
T Consensus 499 QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI----HYq------VPrtseiYVHRSGRTARA~~~--Gvsvml 566 (731)
T KOG0347|consen 499 QKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI----HYQ------VPRTSEIYVHRSGRTARANSE--GVSVML 566 (731)
T ss_pred HHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE----Eee------cCCccceeEecccccccccCC--CeEEEE
Confidence 45566666789999999999999999999999999999 564 667788999999999999888 999999
Q ss_pred ecCCcHHHHHHhh---c--CC---CCchhhHHHHHHH
Q 000849 83 TGHSELQYYLSLM---N--QQ---LPIESQFVSKLAE 111 (1254)
Q Consensus 83 ~~~~~~~~~~~~~---~--~~---~~i~s~l~~~l~~ 111 (1254)
|...+...|.++- . +. .||+..+...+.+
T Consensus 567 ~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lke 603 (731)
T KOG0347|consen 567 CGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKE 603 (731)
T ss_pred eChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHH
Confidence 9998888777752 1 11 2666666664443
No 280
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=96.93 E-value=0.0032 Score=77.84 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCCcEEEechhhhhhcCccc-------eEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCc
Q 000849 4 GDRQLVEDLFCDGHVQVLVSTANLAWGVNLPA-------HTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 76 (1254)
Q Consensus 4 ~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~-------~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~ 76 (1254)
.+|+..-..|+.|...|+|||+..++|.+++. -..||- | ..+-+...+.|+.||+||.|-.
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~----t------~~p~s~ri~~q~~GRtGRqG~~-- 507 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG----T------ERHESRRIDNQLRGRSGRQGDP-- 507 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe----c------CCCCcHHHHHHHhccccCCCCC--
Confidence 45666777899999999999999999999999 335551 2 2467899999999999999877
Q ss_pred ceEEEEecCCc-H---------HHHHHhhc--CCCCchhhHHHHHHHHHH
Q 000849 77 GEGIIITGHSE-L---------QYYLSLMN--QQLPIESQFVSKLAELLN 114 (1254)
Q Consensus 77 g~~~i~~~~~~-~---------~~~~~~~~--~~~~i~s~l~~~l~~~l~ 114 (1254)
|.+..+.+..+ + ..+...+. +..||++.......+...
T Consensus 508 G~s~~~ls~eD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aQ 557 (745)
T TIGR00963 508 GSSRFFLSLEDNLMRIFGGDRLEGLMRRLGLEDDEPIESKMVTRALESAQ 557 (745)
T ss_pred cceEEEEeccHHHHHhhhhHHHHHHHHHcCCCCCceeecHHHHHHHHHHH
Confidence 88777765432 1 12222222 334788877665544433
No 281
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.87 E-value=0.004 Score=76.14 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=49.8
Q ss_pred hcccCCChHHHHHHhhC----CcceeeeeeccCCCchHHHHH---HHHHHHHHhh--------cC---------------
Q 000849 448 KLMFARLPAKQRITAAL----PNIILVLQLAPTGSGKTICAE---FAILRNHQRA--------SE--------------- 497 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i----~~~~~viv~apTGsGKT~~~~---l~il~~l~~~--------~~--------------- 497 (1254)
.+||++++.|+..+..+ .+.+..++..|||+|||++.+ +|-.+.+... ..
T Consensus 17 ~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 17 EFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 47888888887655544 566778888999999997654 4434443311 00
Q ss_pred -----------CCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 498 -----------TGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 498 -----------~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
.+-|++.|-.-|-.-..|+.+++++
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 0126788877777777888888775
No 282
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.016 Score=67.55 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=74.7
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhh-cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~-~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 544 (1254)
.+.+++++||||+|||+.+.-.+....... ..+..+.++-+=+.|.-+.++.+.+.+.+ |+.+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l----gvpv~~---------- 238 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM----GIPVKA---------- 238 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC----CcceEe----------
Confidence 356889999999999987754333222211 12332233334466777777666665533 333311
Q ss_pred hcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCC-cEEEEecCCCCC
Q 000849 545 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENK-IRIVALSTSLAN 623 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~-~rii~lSATl~~ 623 (1254)
+-+++.+...+.. +.+.++|+||++.+...+ .. -+.+++........+ -.++.+|||..
T Consensus 239 --------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~~- 298 (388)
T PRK12723 239 --------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTTK- 298 (388)
T ss_pred --------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-
Confidence 1134444333333 357899999999876521 11 245555555443333 57789999974
Q ss_pred hHHHHHhh
Q 000849 624 AKDLGEWI 631 (1254)
Q Consensus 624 ~~~l~~~l 631 (1254)
..++.+.+
T Consensus 299 ~~~~~~~~ 306 (388)
T PRK12723 299 TSDVKEIF 306 (388)
T ss_pred HHHHHHHH
Confidence 55554443
No 283
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.82 E-value=0.012 Score=62.21 Aligned_cols=126 Identities=14% Similarity=0.164 Sum_probs=72.4
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhc
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLL 546 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 546 (1254)
+.+++++||||+|||+...-.+.+...+ +.++-.+.+=..|.=+.++.+.+.+.+ |+.+.......
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~------- 66 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES------- 66 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS-------
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch-------
Confidence 4578889999999998765444333322 442333444467888888888877755 44443322111
Q ss_pred ccCcEEEEcHhh-HHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 000849 547 EKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623 (1254)
Q Consensus 547 ~~~~Iiv~Tpe~-l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~ 623 (1254)
.|.. +...++.. ..++.++|+||-+-+. +.-+..+..++.+.....+.-.++.+|||...
T Consensus 67 --------~~~~~~~~~l~~~----~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 --------DPAEIAREALEKF----RKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp --------CHHHHHHHHHHHH----HHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred --------hhHHHHHHHHHHH----hhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 1111 11122221 1235789999998643 33344566666666555666778899999853
No 284
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=96.72 E-value=0.0061 Score=76.17 Aligned_cols=106 Identities=24% Similarity=0.398 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
+..+|.-+.+.|++|.+.+|+||+.+|.|++.+.-.+|| .||-.. -..+|.+++||+||.|-. |.++.
T Consensus 648 ~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv----nyd~pn------h~edyvhR~gRTgragrk--g~Avt 715 (997)
T KOG0334|consen 648 DQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV----NYDFPN------HYEDYVHRVGRTGRAGRK--GAAVT 715 (997)
T ss_pred chHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE----Ecccch------hHHHHHHHhcccccCCcc--ceeEE
Confidence 457899999999999999999999999999999999998 577433 366799999999999987 88888
Q ss_pred EecCCcHHHH----HHhhcCCCCchhhHHHHHHHHHHHHHHhc
Q 000849 82 ITGHSELQYY----LSLMNQQLPIESQFVSKLAELLNAEIVLG 120 (1254)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~~~i~s~l~~~l~~~l~~~i~~~ 120 (1254)
+...++..+- ..+.....|+. .++..+..-..++...|
T Consensus 716 Fi~p~q~~~a~dl~~al~~~~~~~P-~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 716 FITPDQLKYAGDLCKALELSKQPVP-KLLQALSERFKAKQKAG 757 (997)
T ss_pred EeChHHhhhHHHHHHHHHhccCCCc-hHHHHHHHHHHhhhhcc
Confidence 8776433211 11122222322 55555555555554443
No 285
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.72 E-value=0.0035 Score=72.24 Aligned_cols=106 Identities=20% Similarity=0.068 Sum_probs=66.6
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v 532 (1254)
+++.|++++.. ....++|.|+.|||||.+...-+...+... ....-+++++++|++.+.++.+++.+.++.. +..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~-~~~- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-GVPPERILVLTFTNAAAQEMRERIRELLEEE-QQE- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-SSTGGGEEEEESSHHHHHHHHHHHHHHHHHC-CHC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc-cCChHHheecccCHHHHHHHHHHHHHhcCcc-ccc-
Confidence 46778888888 455566669999999999887777777663 1223389999999999999999998866543 100
Q ss_pred EEeccccccchhhcccCcEEEEcHhhH-HHHHHh
Q 000849 533 VELTVETAMDLKLLEKGQIIISTPEKW-DALSRR 565 (1254)
Q Consensus 533 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 565 (1254)
-..+............+.|+|-..+ ..+++.
T Consensus 76 --~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~ 107 (315)
T PF00580_consen 76 --SSDNERLRRQLSNIDRIYISTFHSFCYRLLRE 107 (315)
T ss_dssp --CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred --ccccccccccccccchheeehhhhhhhhhhhh
Confidence 0000000001112347888898776 344444
No 286
>PRK09694 helicase Cas3; Provisional
Probab=96.67 E-value=0.0083 Score=76.86 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=45.7
Q ss_pred CCHHHHHHHH----HHH-hCCC---CcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCC
Q 000849 1 MKRGDRQLVE----DLF-CDGH---VQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 1 l~~~~R~~ve----~~f-~~g~---i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~ 72 (1254)
++..+|..+| +.| ++|. .+|||||..+++|||++.. ++|. ...++..+.|++||+||.+
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~D-vlIt------------dlaPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDFD-WLIT------------QLCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCCC-eEEE------------CCCCHHHHHHHHhccCCCC
Confidence 3567885554 456 6676 4799999999999999875 5552 1245779999999999988
Q ss_pred C
Q 000849 73 Y 73 (1254)
Q Consensus 73 ~ 73 (1254)
.
T Consensus 664 ~ 664 (878)
T PRK09694 664 R 664 (878)
T ss_pred C
Confidence 7
No 287
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.58 E-value=0.004 Score=71.02 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
...+|..+-..|+++...|+|||..-|.|.++|....|| .|| ..-++..+.|++||.||.|.. |.++-
T Consensus 503 dqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv----nyD------~ardIdththrigrtgRag~k--GvayT 570 (731)
T KOG0339|consen 503 DQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV----NYD------FARDIDTHTHRIGRTGRAGEK--GVAYT 570 (731)
T ss_pred hhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee----ccc------ccchhHHHHHHhhhccccccc--ceeeE
Confidence 467899999999999999999999999999999877776 466 234688999999999999988 99998
Q ss_pred EecCCcHHH
Q 000849 82 ITGHSELQY 90 (1254)
Q Consensus 82 ~~~~~~~~~ 90 (1254)
+.+..+.+.
T Consensus 571 lvTeKDa~f 579 (731)
T KOG0339|consen 571 LVTEKDAEF 579 (731)
T ss_pred EechhhHHH
Confidence 888777663
No 288
>PHA02533 17 large terminase protein; Provisional
Probab=96.50 E-value=0.024 Score=69.19 Aligned_cols=74 Identities=8% Similarity=-0.029 Sum_probs=58.3
Q ss_pred cccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhc
Q 000849 449 LMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFG 525 (1254)
Q Consensus 449 ~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~ 525 (1254)
.||.+.++|++++..+......++..+=..|||.+....++..... .++. .+++++|++.-|..++++++..+.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~--~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDK--NVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCC--EEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5999999999999988656666788999999999887544443333 3344 899999999999999988876554
No 289
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=96.43 E-value=0.0034 Score=52.25 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=49.2
Q ss_pred ccccCCCCCHHHHHHHHcCCCCCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhc
Q 000849 1073 MLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCN 1129 (1254)
Q Consensus 1073 ~L~Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~ 1129 (1254)
.|.++||||+.++++|.+.| +.|+.+++..+++++..+-++++...+.|.+.++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G---~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAG---IKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTT---CSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcC---CCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999 9999999999999888887899999999988765
No 290
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.33 E-value=0.014 Score=64.74 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=82.1
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
..-.|..|.-|+..++.. +.- .|.+.|+-|||||+.++-+.+......+.-
T Consensus 226 i~prn~eQ~~ALdlLld~-dI~----------------------------lV~L~G~AGtGKTlLALaAgleqv~e~~~y 276 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD-DID----------------------------LVSLGGKAGTGKTLLALAAGLEQVLERKRY 276 (436)
T ss_pred cCcccHHHHHHHHHhcCC-CCC----------------------------eEEeeccCCccHhHHHHHHHHHHHHHHhhh
Confidence 666778899999988764 322 234559999999999988888776654444
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccC-----cEEE----EcHhhHHHHHHhhhc-
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKG-----QIII----STPEKWDALSRRWKQ- 568 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~Iiv----~Tpe~l~~l~~~~~~- 568 (1254)
+ ++|+.-|+..+ |..++.+-|.......-+-++ ..++ ++.+.+..++.+..-
T Consensus 277 ~--KiiVtRp~vpv----------------G~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~ie 338 (436)
T COG1875 277 R--KIIVTRPTVPV----------------GEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIE 338 (436)
T ss_pred c--eEEEecCCcCc----------------ccccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhcccee
Confidence 5 88888887654 333444444433221111110 0111 123334333322111
Q ss_pred ccccce-------eeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 569 RKYVQQ-------VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 569 ~~~l~~-------v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
-..+.. =.+||||||+.+. -..++.+....+.+.++|++.
T Consensus 339 v~alt~IRGRSl~~~FiIIDEaQNLT----------pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 339 VEALTYIRGRSLPDSFIIIDEAQNLT----------PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred eeeeeeecccccccceEEEehhhccC----------HHHHHHHHHhccCCCEEEEcC
Confidence 011111 1689999999886 233444555557889988875
No 291
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.30 E-value=0.0087 Score=73.71 Aligned_cols=165 Identities=15% Similarity=0.154 Sum_probs=99.6
Q ss_pred CCChHHHHHHhhCCcc--eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHH-HHHHHhhcccc
Q 000849 452 ARLPAKQRITAALPNI--ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRY-CDWERKFGKEL 528 (1254)
Q Consensus 452 ~~~~~Q~~~~~~i~~~--~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~-~~~~~~~~~~~ 528 (1254)
+.+|+|+++++++..+ ..|++..++-+|||.+.+-.+...+.. ..+ .++++.||..+|.... .++...+....
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--DPG--PMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--CCC--CEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 6789999999999765 468888999999999765555444433 234 7999999999998876 44554443321
Q ss_pred CcE--EEE---eccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC---CCccHHHHHHHH
Q 000849 529 GMC--VVE---LTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG---QGGPVLEVIVAR 600 (1254)
Q Consensus 529 ~~~--v~~---~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~---~~g~~~e~~~~~ 600 (1254)
.++ +.. -.++.+...+.+..+.+.++....- ....-..++++++||++.+.. ..|..++.+..|
T Consensus 92 ~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~--------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R 163 (557)
T PF05876_consen 92 VLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP--------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKR 163 (557)
T ss_pred HHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC--------cccccCCcCEEEEechhhccccCccCCCHHHHHHHH
Confidence 111 100 0111222233344455655542211 111234678999999999964 467888888887
Q ss_pred HHHHHhhcCCCcEEEEec-CCCCChHHHHHhhc
Q 000849 601 MRYIASQVENKIRIVALS-TSLANAKDLGEWIG 632 (1254)
Q Consensus 601 l~~~~~~~~~~~rii~lS-ATl~~~~~l~~~l~ 632 (1254)
.+.. ....+++..| .|......+...+.
T Consensus 164 ~~tf----~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 164 TKTF----GSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred Hhhh----ccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 7654 2345555555 34443344444443
No 292
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.05 Score=62.96 Aligned_cols=122 Identities=11% Similarity=0.145 Sum_probs=64.7
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccc
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~ 542 (1254)
.++.+++++||||+|||+.....+.+.... .... ++.++. +.|.-+.++.+.|.+.+ |+.+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~--~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~~-------- 199 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMR-FGAS--KVALLTTDSYRIGGHEQLRIFGKIL----GVPVHA-------- 199 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC--eEEEEecccccccHHHHHHHHHHHc----CCceEe--------
Confidence 346688899999999998875544443332 1112 444433 23444566666666543 333322
Q ss_pred hhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 543 ~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
+-+++.+...+.+ +.+.++|+||++-+.. +... +...+..+........+++.+|||..
T Consensus 200 ----------~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~---l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 200 ----------VKDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRT---VSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred ----------cCCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHH---HHHHHHHHhccCCCCeEEEEecCccC
Confidence 2233333222332 4456899999996432 1112 22333333222233456889999974
No 293
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.24 E-value=0.02 Score=72.34 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEE--EecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849 3 RGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVI--IKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 3 ~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vi--i~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
..+|+..=..|+.|...|+|||+..++|.+++-..-| .-|..++. ...+-+...|.|+.|||||.|-. |.++
T Consensus 632 q~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg----terhes~Rid~Ql~GRtGRqGdp--GsS~ 705 (1025)
T PRK12900 632 QHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG----SERHESRRIDRQLRGRAGRQGDP--GESV 705 (1025)
T ss_pred HHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC----CCCCchHHHHHHHhhhhhcCCCC--cceE
Confidence 3467777788999999999999999999999943211 11111221 12346788899999999998877 8888
Q ss_pred EEecCCc-HH------HHHHhh-----cCCCCchhhHHHHHHHHHH
Q 000849 81 IITGHSE-LQ------YYLSLM-----NQQLPIESQFVSKLAELLN 114 (1254)
Q Consensus 81 i~~~~~~-~~------~~~~~~-----~~~~~i~s~l~~~l~~~l~ 114 (1254)
.+.+..+ +- ...+++ .+..||++.+.....+...
T Consensus 706 ffvSleD~Lmr~f~~~~i~~~~~~~~~~e~e~I~~~~i~k~ie~AQ 751 (1025)
T PRK12900 706 FYVSLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSIERAQ 751 (1025)
T ss_pred EEechhHHHHHhhCcHHHHHHHHHcCCCCCCcccchHHHHHHHHHH
Confidence 8876532 21 122222 2345788877665544433
No 294
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.20 E-value=0.021 Score=69.70 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=47.2
Q ss_pred CCceEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCce-----------EEEEccCCcHHHHHHh
Q 000849 768 GKIKVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSEK-----------CVILCHAPHKEYYKKF 834 (1254)
Q Consensus 768 g~~~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~-----------~iil~~~~~~~~~~~~ 834 (1254)
...+.|++-.+|-.|.|=| +.++ .-...-|..+=+|.+||.-|-.-+..|. -.+++..+++.+.+.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3579999999999999999 5555 3334457778899999999954333333 3345566666665554
Q ss_pred h
Q 000849 835 L 835 (1254)
Q Consensus 835 l 835 (1254)
.
T Consensus 562 q 562 (985)
T COG3587 562 Q 562 (985)
T ss_pred H
Confidence 3
No 295
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.12 E-value=0.0091 Score=70.37 Aligned_cols=69 Identities=16% Similarity=0.061 Sum_probs=53.7
Q ss_pred hcccCCChHHHHHHhhCCcc-eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHH
Q 000849 448 KLMFARLPAKQRITAALPNI-ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE 521 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~-~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~ 521 (1254)
-+++.+.+.|++++...... ...+++||+|+|||.....-|.+.+.+ ++ +|++.+||.+-++.+.+++.
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k--~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KK--RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CC--eEEEEcCchHHHHHHHHHhc
Confidence 44555666777777766555 457788999999999887777777766 55 99999999999998888754
No 296
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.91 E-value=0.029 Score=55.93 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=23.5
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcch
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPI 509 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~ 509 (1254)
...+++.||+|+|||..+... .+.+.. .+. .++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i-~~~~~~--~~~--~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI-ANELFR--PGA--PFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHhhc--CCC--CeEEEehh
Confidence 567888899999999765433 333322 123 56666544
No 297
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.89 E-value=0.15 Score=58.51 Aligned_cols=130 Identities=14% Similarity=0.164 Sum_probs=77.3
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc-chHHHHHHHHHHHHHhhccccCcEEEEeccccccchh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA-PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~-P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 544 (1254)
++.++.++||||.|||+...-.+.+.... ..... -+++.. -.|.=|.++.+...+.+ |+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~k-VaiITtDtYRIGA~EQLk~Ya~im----~vp~------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKK-VAIITTDTYRIGAVEQLKTYADIM----GVPL------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcc-eEEEEeccchhhHHHHHHHHHHHh----CCce------------
Confidence 37788999999999997654333333322 11221 233333 45666666666666544 3333
Q ss_pred hcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh
Q 000849 545 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~ 624 (1254)
.++-+|.-|...+.. +.+.++|.||=+- |++.=...++.++.+......--..+.+|||. ..
T Consensus 264 ------~vv~~~~el~~ai~~------l~~~d~ILVDTaG-----rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~ 325 (407)
T COG1419 264 ------EVVYSPKELAEAIEA------LRDCDVILVDTAG-----RSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KY 325 (407)
T ss_pred ------EEecCHHHHHHHHHH------hhcCCEEEEeCCC-----CCccCHHHHHHHHHHHhccccceEEEEEecCc-ch
Confidence 345566666444433 5667899999875 33333345667776665544445678899996 56
Q ss_pred HHHHHhh
Q 000849 625 KDLGEWI 631 (1254)
Q Consensus 625 ~~l~~~l 631 (1254)
+|+.+-+
T Consensus 326 ~dlkei~ 332 (407)
T COG1419 326 EDLKEII 332 (407)
T ss_pred HHHHHHH
Confidence 6665544
No 298
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.13 Score=59.06 Aligned_cols=122 Identities=19% Similarity=0.192 Sum_probs=64.7
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEE-c-chHHHHHHHHHHHHHhhccccCcEEEEeccccccch
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYI-A-PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i-~-P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 543 (1254)
.+..+.++||||+|||+......... .. .+. ++.++ + |.|.-+.++...+.+.. |+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~~--~Gk--kVglI~aDt~RiaAvEQLk~yae~l----gipv~---------- 300 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-HG--KKK--TVGFITTDHSRIGTVQQLQDYVKTI----GFEVI---------- 300 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-HH--cCC--cEEEEecCCcchHHHHHHHHHhhhc----CCcEE----------
Confidence 34678889999999998775544332 22 233 44443 3 45544444444444321 22221
Q ss_pred hhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 544 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 544 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
...+|..+...++.... -.+.++|+||-+=+...+ ...+..+..+.....+...++.+|||..
T Consensus 301 --------v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsATtk 363 (436)
T PRK11889 301 --------AVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSASMK 363 (436)
T ss_pred --------ecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECCccC
Confidence 12356666444433221 125789999988654421 1223444444433344455677999864
No 299
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.81 E-value=0.034 Score=68.86 Aligned_cols=122 Identities=21% Similarity=0.209 Sum_probs=80.6
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
+..+|.-|++|+-.++...+-.+|. |=+|+|||......+ +.+.. .+
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~------------------------------GMPGTGKTTtI~~LI-kiL~~--~g 713 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALIL------------------------------GMPGTGKTTTISLLI-KILVA--LG 713 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheee------------------------------cCCCCCchhhHHHHH-HHHHH--cC
Confidence 5689999999999999888877777 999999998765544 33333 25
Q ss_pred CCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccc---------------cc-----hhhcccCcEEEEcHhh
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA---------------MD-----LKLLEKGQIIISTPEK 558 (1254)
Q Consensus 499 ~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~---------------~~-----~~~~~~~~Iiv~Tpe~ 558 (1254)
+ +|+..+-|-..++.+.-+++. + ++.+..+..+.. .. ...+.++.|+.||==-
T Consensus 714 k--kVLLtsyThsAVDNILiKL~~-~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClg 786 (1100)
T KOG1805|consen 714 K--KVLLTSYTHSAVDNILIKLKG-F----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLG 786 (1100)
T ss_pred C--eEEEEehhhHHHHHHHHHHhc-c----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccC
Confidence 5 899999998888888777765 2 333222221111 00 1344567888888221
Q ss_pred H-HHHHHhhhcccccceeeEEEeccccccc
Q 000849 559 W-DALSRRWKQRKYVQQVSLFIIDELHLIG 587 (1254)
Q Consensus 559 l-~~l~~~~~~~~~l~~v~liIiDEaH~l~ 587 (1254)
+ +-++ ....+++.|||||-.+.
T Consensus 787 i~~plf-------~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 787 INHPLF-------VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CCchhh-------hccccCEEEEccccccc
Confidence 1 1111 23468999999998766
No 300
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.71 E-value=0.066 Score=68.57 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=36.7
Q ss_pred cCCChHHHHHHhhCCc-ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 451 FARLPAKQRITAALPN-IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 451 f~~~~~Q~~~~~~i~~-~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
|.+.+.|++++..+-. +...+++|+.|+|||.+.- ++...+.. .+. ++++++||--.+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~--~g~--~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA--AGY--RVIGAALSGKAAEG 411 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh--CCC--eEEEEeCcHHHHHH
Confidence 3444444444444422 2456777999999997653 34444443 233 89999999666544
No 301
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.69 E-value=0.0046 Score=63.35 Aligned_cols=126 Identities=19% Similarity=0.163 Sum_probs=55.2
Q ss_pred eeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCc
Q 000849 471 LQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQ 550 (1254)
Q Consensus 471 iv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 550 (1254)
|+.|+-|-|||.+.-+++...+.. +..++++.+|+.+-+...++...+.+... +.+............-...+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC---------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----cCceEEEecCCHHHHHHHHHHHHhhcccc-ccccccccccccccccccccce
Confidence 466999999998776665433333 11379999999998888776665443332 3222000000000000112456
Q ss_pred EEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh
Q 000849 551 IIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624 (1254)
Q Consensus 551 Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~ 624 (1254)
|-+..|+.+ .. .-...+++|||||=.+. +..++.+. .... .+.+|.|+..+
T Consensus 76 i~f~~Pd~l---~~------~~~~~DlliVDEAAaIp----------~p~L~~ll---~~~~-~vv~stTi~GY 126 (177)
T PF05127_consen 76 IEFVAPDEL---LA------EKPQADLLIVDEAAAIP----------LPLLKQLL---RRFP-RVVFSTTIHGY 126 (177)
T ss_dssp --B--HHHH---CC------T----SCEEECTGGGS-----------HHHHHHHH---CCSS-EEEEEEEBSST
T ss_pred EEEECCHHH---Hh------CcCCCCEEEEechhcCC----------HHHHHHHH---hhCC-EEEEEeecccc
Confidence 777777765 11 12245899999998776 45555554 2333 46677787654
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=95.68 E-value=0.077 Score=60.77 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=67.4
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccch
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 543 (1254)
.+.++++.||+|+|||+...-.+. .+.. .+. +++++. +.|+-+.++.+.+...+ |+.+.. +....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~-~l~~--~g~--~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~-- 205 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY-YLKK--NGF--SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGA-- 205 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH-HHHH--cCC--eEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCC--
Confidence 467899999999999986644332 2333 233 666654 34455555455555433 443321 11111
Q ss_pred hhcccCcEEEEcHhh-HHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 544 KLLEKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 544 ~~~~~~~Iiv~Tpe~-l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
.|.. +...++.. .....++|+||.++++..+. .++..++.+.+...+...++.++||..
T Consensus 206 -----------dp~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 -----------DPAAVAYDAIEHA----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred -----------CHHHHHHHHHHHH----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeeccccc
Confidence 1111 11111111 12356899999999775321 134444444444456777888999875
Q ss_pred C
Q 000849 623 N 623 (1254)
Q Consensus 623 ~ 623 (1254)
+
T Consensus 266 ~ 266 (336)
T PRK14974 266 N 266 (336)
T ss_pred h
Confidence 3
No 303
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.61 E-value=0.02 Score=71.73 Aligned_cols=65 Identities=18% Similarity=0.076 Sum_probs=46.7
Q ss_pred CChHHHHHHhhCCcc-eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 453 RLPAKQRITAALPNI-ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~-~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
+...|++++.....+ ...+++||+|+|||....-.+.+.+.. +. +|++++||...+.++.+++.+
T Consensus 158 ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CC--CEEEEcCcHHHHHHHHHHHHh
Confidence 345666666655433 456777999999998765544444433 33 899999999999999888875
No 304
>PRK06526 transposase; Provisional
Probab=95.52 E-value=0.05 Score=60.00 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=27.0
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
..+..+++.||+|+|||..+.-........ +. +++|+.. ..++.+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~---g~--~v~f~t~-~~l~~~ 140 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA---GH--RVLFATA-AQWVAR 140 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC---CC--chhhhhH-HHHHHH
Confidence 455678888999999998775443333322 33 5655433 334443
No 305
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.50 E-value=0.052 Score=63.64 Aligned_cols=109 Identities=22% Similarity=0.317 Sum_probs=59.0
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHH--HHHHHHhhccccCcEEEEeccccccc
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQR--YCDWERKFGKELGMCVVELTVETAMD 542 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~--~~~~~~~~~~~~~~~v~~~~g~~~~~ 542 (1254)
..+..+.+.||-|+|||.+.- .+...+.. .+. .+++++||-..|..+ -..+...|+ +.+.. ..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~--~~~--~~~~~a~tg~AA~~i~~G~T~hs~f~----i~~~~----~~-- 84 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIK-AIIDYLRS--RGK--KVLVTAPTGIAAFNIPGGRTIHSFFG----IPINN----NE-- 84 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHH-HHHHHhcc--ccc--eEEEecchHHHHHhccCCcchHHhcC----ccccc----cc--
Confidence 456667778999999997652 22233322 233 799999997766554 122222222 11110 00
Q ss_pred hhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHH
Q 000849 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIA 605 (1254)
Q Consensus 543 ~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~ 605 (1254)
.... .+++-. .....+..++++|+||+=++. ...++.+-.+++.+.
T Consensus 85 -----~~~~---~~~~~~------~~~~~l~~~~~lIiDEism~~---~~~l~~i~~~lr~i~ 130 (364)
T PF05970_consen 85 -----KSQC---KISKNS------RLRERLRKADVLIIDEISMVS---ADMLDAIDRRLRDIR 130 (364)
T ss_pred -----cccc---cccccc------hhhhhhhhheeeecccccchh---HHHHHHHHHhhhhhh
Confidence 0000 111111 112347789999999999876 334454545555554
No 306
>PRK04296 thymidine kinase; Provisional
Probab=95.49 E-value=0.037 Score=58.45 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=25.9
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
+..++.||+|+|||+.+.-.+.+.... +. +++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~---g~--~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER---GM--KVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc---CC--eEEEEec
Confidence 467888999999998876655544433 44 7888766
No 307
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.44 E-value=0.084 Score=68.57 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=28.5
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
.++++|+.|+|||++. -++...+.. .+. +|+.++||--.+..
T Consensus 364 v~vv~G~AGTGKTT~l-~~~~~~~e~--~G~--~V~~~ApTGkAA~~ 405 (988)
T PRK13889 364 LGVVVGYAGTGKSAML-GVAREAWEA--AGY--EVRGAALSGIAAEN 405 (988)
T ss_pred eEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEecCcHHHHHH
Confidence 4567799999999863 344444443 233 89999999765543
No 308
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.34 E-value=0.074 Score=58.91 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=67.5
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCC--CcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETG--VMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~--~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 544 (1254)
...++++|+||.|||.+..-..-.+-.....+. -|-+.+-+|...-....|..+-..++-. ... .+
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP----~~~--~~------ 128 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP----YRP--RD------ 128 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc----cCC--CC------
Confidence 345788899999999865332221111101111 1345555677776666666665544422 100 00
Q ss_pred hcccCcEEEEcHhhH----HHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEe
Q 000849 545 LLEKGQIIISTPEKW----DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVAL 617 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l----~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~l 617 (1254)
+..++ ..+++. -.++++||||+|.+.......-..+++.+|.+...+ .+.+|++
T Consensus 129 ----------~~~~~~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~v 186 (302)
T PF05621_consen 129 ----------RVAKLEQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGV 186 (302)
T ss_pred ----------CHHHHHHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEe
Confidence 11111 122332 357899999999988655556667788888886543 4556655
No 309
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.34 E-value=0.064 Score=63.68 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecC----ccccCCCCc----cccCCHHHHHHHhcccCCCCC
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGT----QVYNPEKGA----WTELSPLDIMQMLGRAGRPQY 73 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~----~~~~~~~~~----~~~~~~~~~~qm~GRAGR~~~ 73 (1254)
|.+....|=+---.|.=+|+.||+...-.+.++....||-.- ..|+|..|. ..|+|-..--|++|||||.|-
T Consensus 517 PselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP 596 (902)
T KOG0923|consen 517 PSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP 596 (902)
T ss_pred ChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCC
Confidence 333334443344578889999999999999999999888432 568888882 357899999999999999754
Q ss_pred CCcceEEEEecCCcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcc
Q 000849 74 DSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGT 121 (1254)
Q Consensus 74 ~~~g~~~i~~~~~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~ 121 (1254)
|+|+=+.+.. .|...+... ++..-...+|...++..-++|.
T Consensus 597 ---GKCfRLYt~~---aY~~eLE~~-t~PEIqRtnL~nvVL~LkSLGI 637 (902)
T KOG0923|consen 597 ---GKCFRLYTAW---AYEHELEEM-TVPEIQRTNLGNVVLLLKSLGI 637 (902)
T ss_pred ---CceEEeechh---hhhhhhccC-CCcceeeccchhHHHHHHhcCc
Confidence 8888776642 244333221 1111122366677777777775
No 310
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.31 E-value=0.057 Score=69.48 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=68.6
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMC 531 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~ 531 (1254)
+.+.|++++..... .++|.|..|||||.+...-+...+... -+.. ++++++.|+..|.++.+++.+.++..
T Consensus 5 Ln~~Q~~av~~~~g--~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~--~IL~lTFTnkAA~em~~Rl~~~~~~~---- 76 (715)
T TIGR01075 5 LNDKQREAVAAPPG--NLLVLAGAGSGKTRVLTHRIAWLLSVENASPH--SIMAVTFTNKAAAEMRHRIGALLGTS---- 76 (715)
T ss_pred cCHHHHHHHcCCCC--CEEEEecCCCCHHHHHHHHHHHHHHcCCCCHH--HeEeeeccHHHHHHHHHHHHHHhccc----
Confidence 56667676665433 355669999999998876666665531 1233 89999999999999999888754311
Q ss_pred EEEeccccccchhhcccCcEEEEcHhhH-HHHHHhhhcccccceeeEEEecccc
Q 000849 532 VVELTVETAMDLKLLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDELH 584 (1254)
Q Consensus 532 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~v~liIiDEaH 584 (1254)
...+.|+|...| ..+++.......+. -.+-|+|+.+
T Consensus 77 ----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 113 (715)
T TIGR01075 77 ----------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDD 113 (715)
T ss_pred ----------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 125678998887 44555432211111 1234667765
No 311
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.30 E-value=0.048 Score=68.71 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=68.2
Q ss_pred HHhhcc-cCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHh
Q 000849 445 LSRKLM-FARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERK 523 (1254)
Q Consensus 445 ~~~~~~-f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~ 523 (1254)
|..+.+ +.+++.|++++..-..+ ++|.|..|||||.+..--+...+... ...+-++++++.++..|.++.+++.+.
T Consensus 188 ~f~~~e~~~L~~~Q~~av~~~~~~--~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 188 FFSQVESSPLNPSQARAVVNGEDS--LLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred HHHhccCCCCCHHHHHHHhCCCCC--eEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 344555 88999999999866543 57789999999998866655555442 111228999999999999999888765
Q ss_pred hccccCcEEEEeccccccchhhcccCcEEEEcHhhH-HHHHHh
Q 000849 524 FGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKW-DALSRR 565 (1254)
Q Consensus 524 ~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 565 (1254)
++ ...|-|+|-..| ..+++.
T Consensus 265 lg----------------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 265 LG----------------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred cC----------------------CCCcEEEeHHHHHHHHHHH
Confidence 42 125778888877 345554
No 312
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.26 E-value=0.26 Score=58.77 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=64.8
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccchh
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 544 (1254)
+.+++++||||+|||+.....+...... ..+. +|.++. |.|.-+.++...|.+.+ |+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~--~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~----------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKK--KVALITLDTYRIGAVEQLKTYAKIM----GIPVE----------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC--eEEEEECCccHHHHHHHHHHHHHHh----CCceE-----------
Confidence 4578888999999998765433333211 1123 454443 55655555566665533 32221
Q ss_pred hcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHh-hcCCCcEEEEecCCCCC
Q 000849 545 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIAS-QVENKIRIVALSTSLAN 623 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~-~~~~~~rii~lSATl~~ 623 (1254)
.+.+++.+...++. +.+.++|+||.+-+...+ ... +..+..+.. .......++.+|||..
T Consensus 283 -------~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d-~~~----~~~L~~ll~~~~~~~~~~LVl~a~~~- 343 (424)
T PRK05703 283 -------VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRD-KRL----IEELKALIEFSGEPIDVYLVLSATTK- 343 (424)
T ss_pred -------ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCC-HHH----HHHHHHHHhccCCCCeEEEEEECCCC-
Confidence 12344444333333 336799999998654321 111 222333322 1123345788999874
Q ss_pred hHHHH
Q 000849 624 AKDLG 628 (1254)
Q Consensus 624 ~~~l~ 628 (1254)
..++.
T Consensus 344 ~~~l~ 348 (424)
T PRK05703 344 YEDLK 348 (424)
T ss_pred HHHHH
Confidence 43443
No 313
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.13 E-value=0.044 Score=69.62 Aligned_cols=90 Identities=20% Similarity=0.183 Sum_probs=63.0
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMC 531 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~ 531 (1254)
+.+.|++++.....+ ++|.|..|||||.+...-+...+... -+.. ++++++.|+..|.++.+++.+.++..
T Consensus 3 Ln~~Q~~av~~~~g~--~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~em~~Rl~~~l~~~---- 74 (672)
T PRK10919 3 LNPGQQQAVEFVTGP--CLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVAQTLGRK---- 74 (672)
T ss_pred CCHHHHHHHhCCCCC--EEEEecCCCCHHHHHHHHHHHHHHhcCCCHH--HeeeEechHHHHHHHHHHHHHHhCcc----
Confidence 566777777765433 45559999999999877777666541 2233 79999999999999998888755421
Q ss_pred EEEeccccccchhhcccCcEEEEcHhhH-HHHHHh
Q 000849 532 VVELTVETAMDLKLLEKGQIIISTPEKW-DALSRR 565 (1254)
Q Consensus 532 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 565 (1254)
....+.|+|...| ..+++.
T Consensus 75 ---------------~~~~v~i~TfHS~~~~iLr~ 94 (672)
T PRK10919 75 ---------------EARGLMISTFHTLGLDIIKR 94 (672)
T ss_pred ---------------cccCcEEEcHHHHHHHHHHH
Confidence 0125778998887 445554
No 314
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.12 E-value=0.16 Score=54.95 Aligned_cols=107 Identities=18% Similarity=0.281 Sum_probs=60.9
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhccc
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEK 548 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 548 (1254)
-+.+.||+|+|||-. +.++...+.+..++. +|+|+... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~--~v~y~~~~-~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGK--RVVYLSAE-EFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS---EEEEEHH-HHHHHHHHHHHT--------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccc--cceeecHH-HHHHHHHHHHHc--------------------------
Confidence 366779999999984 456666555534444 78887643 333333322221
Q ss_pred CcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 000849 549 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623 (1254)
Q Consensus 549 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~ 623 (1254)
...+.+ .. .+...++++||++|.+.+. ...-+.+...+..+.. .+.++|+.|...|+
T Consensus 86 -----~~~~~~---~~------~~~~~DlL~iDDi~~l~~~-~~~q~~lf~l~n~~~~---~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 -----GEIEEF---KD------RLRSADLLIIDDIQFLAGK-QRTQEELFHLFNRLIE---SGKQLILTSDRPPS 142 (219)
T ss_dssp -----TSHHHH---HH------HHCTSSEEEEETGGGGTTH-HHHHHHHHHHHHHHHH---TTSEEEEEESS-TT
T ss_pred -----ccchhh---hh------hhhcCCEEEEecchhhcCc-hHHHHHHHHHHHHHHh---hCCeEEEEeCCCCc
Confidence 011111 11 2557899999999998742 2233445555554443 35688888866654
No 315
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.12 E-value=0.14 Score=66.87 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=44.6
Q ss_pred ccCCChHHHHHHhhC-CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 450 MFARLPAKQRITAAL-PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 450 ~f~~~~~Q~~~~~~i-~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
+|.+++.|++++..+ ..+...+++|+.|+|||++.- ++...+.. .+. +++-++||-.-+..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~--~G~--~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA--AGY--RVVGGALAGKAAEG 440 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH--cCC--eEEEEcCcHHHHHH
Confidence 577888888888877 456788999999999997653 34444443 244 89999999666544
No 316
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.12 E-value=0.042 Score=66.08 Aligned_cols=60 Identities=33% Similarity=0.476 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCC
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRP 71 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~ 71 (1254)
+.++|..+-+.|+.|.+++||++.-|.-|||+|...++|.- .| .-|...|.||+||.=|+
T Consensus 317 ~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~----~~------t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 317 PKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIIL----RP------TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEe----CC------CCcHHHHHHHhhhhccC
Confidence 57899999999999999999999999999999998888843 22 24688999999999996
No 317
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.05 E-value=0.17 Score=55.46 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=37.1
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHH
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE 521 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~ 521 (1254)
++.+..+++.||+|+|||+.+...+...+.. +. +++|++- .+-..++.+++.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge--~~lyvs~-ee~~~~i~~~~~ 69 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GE--PGIYVAL-EEHPVQVRRNMA 69 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CC--cEEEEEe-eCCHHHHHHHHH
Confidence 4567788888999999999888777766644 44 7888873 344555555554
No 318
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.02 E-value=0.074 Score=68.42 Aligned_cols=107 Identities=21% Similarity=0.120 Sum_probs=67.3
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMC 531 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~ 531 (1254)
+.+.|++++..... .++|.|..|||||.+...-+...+... -+.. ++++++-|+..|.++.+++.+.++..
T Consensus 10 Ln~~Q~~av~~~~g--~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~Em~~Rl~~~~~~~---- 81 (721)
T PRK11773 10 LNDKQREAVAAPLG--NMLVLAGAGSGKTRVLVHRIAWLMQVENASPY--SIMAVTFTNKAAAEMRHRIEQLLGTS---- 81 (721)
T ss_pred cCHHHHHHHhCCCC--CEEEEecCCCCHHHHHHHHHHHHHHcCCCChh--HeEeeeccHHHHHHHHHHHHHHhccC----
Confidence 55556666654432 345559999999998876666655431 2233 79999999999999999888754311
Q ss_pred EEEeccccccchhhcccCcEEEEcHhhH-HHHHHhhhcccccceeeEEEecccc
Q 000849 532 VVELTVETAMDLKLLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDELH 584 (1254)
Q Consensus 532 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~v~liIiDEaH 584 (1254)
...+.|+|...| ..+++.......+. -.+-|+|+.+
T Consensus 82 ----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 82 ----------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred ----------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 124678998887 44555432211111 1234677665
No 319
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.99 E-value=0.12 Score=61.78 Aligned_cols=137 Identities=13% Similarity=0.206 Sum_probs=80.7
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHH-HHHHHHHHHHHhhccccCcEEEEeccccccchhhcc
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEA-LAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLE 547 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~-La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 547 (1254)
..++.|..|||||.+..+.++..+....++. +++++-|+.. |...++..+...+... |+....-..+.........
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~--~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQ--NILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCc--EEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecC
Confidence 4567799999999999888877776621344 8999999877 7777778887666543 5432211111111111112
Q ss_pred -cCcEEEEcH-hhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 000849 548 -KGQIIISTP-EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623 (1254)
Q Consensus 548 -~~~Iiv~Tp-e~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~ 623 (1254)
...|++..- +....+. ....++++.+|||..+.. ..++.+..|++. +...+.+.+|.++..
T Consensus 80 ~g~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSNPES 142 (396)
T ss_pred CCeEEEeecccCChhHhh-------CcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcCcCC
Confidence 235555443 2221111 233479999999998752 366767766542 112224677777654
No 320
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.98 E-value=0.19 Score=60.53 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=59.2
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccC
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKG 549 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 549 (1254)
+++.|++|+|||... .++.+.+....++. +++|+.+ ..+..+....+.. . .
T Consensus 144 l~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~--~v~yv~~-~~f~~~~~~~l~~----~--~------------------- 194 (450)
T PRK14087 144 LFIYGESGMGKTHLL-KAAKNYIESNFSDL--KVSYMSG-DEFARKAVDILQK----T--H------------------- 194 (450)
T ss_pred eEEECCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH-HHHHHHHHHHHHH----h--h-------------------
Confidence 566699999999765 45666555423344 7888766 4455554443321 0 0
Q ss_pred cEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCC
Q 000849 550 QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSL 621 (1254)
Q Consensus 550 ~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl 621 (1254)
+.+..+.+. +.+.+++|+||+|.+... ....+.+...+..... .+.++|+.|-..
T Consensus 195 -------~~~~~~~~~------~~~~dvLiIDDiq~l~~k-~~~~e~lf~l~N~~~~---~~k~iIltsd~~ 249 (450)
T PRK14087 195 -------KEIEQFKNE------ICQNDVLIIDDVQFLSYK-EKTNEIFFTIFNNFIE---NDKQLFFSSDKS 249 (450)
T ss_pred -------hHHHHHHHH------hccCCEEEEeccccccCC-HHHHHHHHHHHHHHHH---cCCcEEEECCCC
Confidence 111111222 446789999999988632 2234445555554432 344666655443
No 321
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=94.94 E-value=0.085 Score=63.29 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=90.3
Q ss_pred HhCCCCcEEEechhhhhhcCccceEEEEecC----ccccCCCCc----cccCCHHHHHHHhcccCCCCCCCcceEEEEec
Q 000849 13 FCDGHVQVLVSTANLAWGVNLPAHTVIIKGT----QVYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 84 (1254)
Q Consensus 13 f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~----~~~~~~~~~----~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~ 84 (1254)
--.|.=||++||+.-+-.|-+|....||-+- +.|||..|. ..++|-..-.|++|||||.| .|+++=+.+
T Consensus 312 ~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYt 388 (674)
T KOG0922|consen 312 APPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYT 388 (674)
T ss_pred CCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeee
Confidence 3458889999999999999999999998443 679988873 24689999999999999964 488887776
Q ss_pred CCcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcCchhHHHHHH
Q 000849 85 HSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERIT 164 (1254)
Q Consensus 85 ~~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~~~~~~~~~ 164 (1254)
.++ |.++..++.| .-...+|...++...++|.- | .+...|+ -.|. .
T Consensus 389 e~~---~~~~~~~~~P--EI~R~~Ls~~vL~Lkalgi~-d------~l~F~f~-----d~P~-----------------~ 434 (674)
T KOG0922|consen 389 ESA---YDKMPLQTVP--EIQRVNLSSAVLQLKALGIN-D------PLRFPFI-----DPPP-----------------P 434 (674)
T ss_pred HHH---HhhcccCCCC--ceeeechHHHHHHHHhcCCC-C------cccCCCC-----CCCC-----------------h
Confidence 543 5665555444 11112555566666666642 1 1222222 1111 3
Q ss_pred HHHHHHHHHhhhcCcccc
Q 000849 165 DLIHTAANVLDRNNLVKY 182 (1254)
Q Consensus 165 ~~~~~~~~~L~~~~~i~~ 182 (1254)
+-+..|++.|...|-|..
T Consensus 435 ~~l~~AL~~L~~lgald~ 452 (674)
T KOG0922|consen 435 EALEEALEELYSLGALDD 452 (674)
T ss_pred HHHHHHHHHHHhcCcccC
Confidence 356789999999998863
No 322
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.88 E-value=0.065 Score=52.92 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=26.7
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~ 514 (1254)
+..+++.||+|+|||..+...+. .+.. ... .++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~-~~~~--~~~--~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR-ELGP--PGG--GVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh-ccCC--CCC--CEEEECCEEcccc
Confidence 35678889999999987754332 2222 111 4777777655433
No 323
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=1.1 Score=53.85 Aligned_cols=170 Identities=15% Similarity=0.229 Sum_probs=84.6
Q ss_pred CcChHHHHHHHHHhcC-CchHHHHHHHhhcccC--CChHH---HHHHhh---------CCcceeeeeeccCCCchHHHHH
Q 000849 421 LFNPIQTQVFAVLYNT-EDNVLVAALSRKLMFA--RLPAK---QRITAA---------LPNIILVLQLAPTGSGKTICAE 485 (1254)
Q Consensus 421 ~~~~~Q~~~~~~~~~~-~~n~lv~~~~~~~~f~--~~~~Q---~~~~~~---------i~~~~~viv~apTGsGKT~~~~ 485 (1254)
.-+|.|.+.+..+... -+.-++.+|..++|-. ..... .+.+.. +..+.++.++||||+|||+.+.
T Consensus 289 ~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 289 RGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred ccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHH
Confidence 4457788877776543 2345566666666532 11122 222222 2456788888999999998775
Q ss_pred HHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHH
Q 000849 486 FAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALS 563 (1254)
Q Consensus 486 l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~ 563 (1254)
..+...... ..++ ++.++. +.+..+.++...+. ..+|+.+.. +.+++.+...+
T Consensus 369 kLAa~la~~-~~gk--kVaLIdtDtyRigA~EQLk~ya----~iLgv~v~~------------------a~d~~~L~~aL 423 (559)
T PRK12727 369 KLAQRFAAQ-HAPR--DVALVTTDTQRVGGREQLHSYG----RQLGIAVHE------------------ADSAESLLDLL 423 (559)
T ss_pred HHHHHHHHh-cCCC--ceEEEecccccccHHHHHHHhh----cccCceeEe------------------cCcHHHHHHHH
Confidence 443333222 1123 444443 34554444333332 222333221 11334444444
Q ss_pred HhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCChHHHH
Q 000849 564 RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLG 628 (1254)
Q Consensus 564 ~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~~~l~ 628 (1254)
+. +.+.++|+||.+-....+ .. ....+..+... .....++.++++. ...++.
T Consensus 424 ~~------l~~~DLVLIDTaG~s~~D--~~---l~eeL~~L~aa-~~~a~lLVLpAts-s~~Dl~ 475 (559)
T PRK12727 424 ER------LRDYKLVLIDTAGMGQRD--RA---LAAQLNWLRAA-RQVTSLLVLPANA-HFSDLD 475 (559)
T ss_pred HH------hccCCEEEecCCCcchhh--HH---HHHHHHHHHHh-hcCCcEEEEECCC-ChhHHH
Confidence 43 346899999999754311 11 12222222111 2345678888886 333433
No 324
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.84 E-value=0.017 Score=60.36 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=48.4
Q ss_pred EEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEEecCCcHH
Q 000849 21 LVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQ 89 (1254)
Q Consensus 21 l~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~~~~~~ 89 (1254)
+|||..+++|+++-..+++| -|| .|-+...|+++.|||||.|.. |.+|-+....+..
T Consensus 302 ~vat~lfgrgmdiervNi~~----NYd------mp~~~DtYlHrv~rAgrfGtk--glaitfvs~e~da 358 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVF----NYD------MPEDSDTYLHRVARAGRFGTK--GLAITFVSDENDA 358 (387)
T ss_pred hHHhhhhccccCcccceeee----ccC------CCCCchHHHHHhhhhhccccc--cceeehhcchhhH
Confidence 89999999999999999999 466 567788999999999999877 8888777664433
No 325
>PRK05973 replicative DNA helicase; Provisional
Probab=94.83 E-value=0.21 Score=54.16 Aligned_cols=137 Identities=19% Similarity=0.151 Sum_probs=75.4
Q ss_pred HHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEec
Q 000849 457 KQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELT 536 (1254)
Q Consensus 457 Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~ 536 (1254)
..++.--+..+..+++.|++|+|||..++..+.....+ +. +++|++---. ..|+.+++.. + |+....
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge--~vlyfSlEes-~~~i~~R~~s-~----g~d~~~-- 120 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GR--TGVFFTLEYT-EQDVRDRLRA-L----GADRAQ-- 120 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEEeCC-HHHHHHHHHH-c----CCChHH--
Confidence 55566677888889999999999999887766655543 44 7888754322 4566666654 2 221100
Q ss_pred cccccchhhcccCcEEEEc-HhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHHHHHHHhhcCCCcEE
Q 000849 537 VETAMDLKLLEKGQIIIST-PEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRI 614 (1254)
Q Consensus 537 g~~~~~~~~~~~~~Iiv~T-pe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~l~~~~~~~~~~~ri 614 (1254)
....-++... +...+.+.++... -.+.++||||=+..+.. .+...+..++..++.+.+. .++.+
T Consensus 121 ---------~~~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~--~gitv 186 (237)
T PRK05973 121 ---------FADLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARE--RGLII 186 (237)
T ss_pred ---------hccceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHh--CCCeE
Confidence 0000011110 1111122222221 12458999999998754 2333444455556655543 56777
Q ss_pred EEecCC
Q 000849 615 VALSTS 620 (1254)
Q Consensus 615 i~lSAT 620 (1254)
|++|-.
T Consensus 187 Il~sQl 192 (237)
T PRK05973 187 VFISQI 192 (237)
T ss_pred EEEecC
Confidence 777644
No 326
>PRK08181 transposase; Validated
Probab=94.83 E-value=0.3 Score=54.22 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=27.8
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHH
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQR 516 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~ 516 (1254)
.....+++.||+|+|||..+... ...+.. .+. +++|+. ...|..++
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Ai-a~~a~~--~g~--~v~f~~-~~~L~~~l 149 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAI-GLALIE--NGW--RVLFTR-TTDLVQKL 149 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHH-HHHHHH--cCC--ceeeee-HHHHHHHH
Confidence 45566888899999999776533 333333 133 566554 44555543
No 327
>PRK08727 hypothetical protein; Validated
Probab=94.81 E-value=0.19 Score=55.02 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=21.4
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA 507 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~ 507 (1254)
.+++.||+|+|||..+. ++...+.. .+. +++|+.
T Consensus 43 ~l~l~G~~G~GKThL~~-a~~~~~~~--~~~--~~~y~~ 76 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL-ALCAAAEQ--AGR--SSAYLP 76 (233)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH--cCC--cEEEEe
Confidence 36677999999997664 33333333 233 677764
No 328
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.79 E-value=0.049 Score=67.91 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=58.7
Q ss_pred HHHHHhCCCCcEEEechhhhhhcCccceEEEE-e--cCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEEecC
Q 000849 9 VEDLFCDGHVQVLVSTANLAWGVNLPAHTVII-K--GTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 85 (1254)
Q Consensus 9 ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii-~--~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~~ 85 (1254)
.-..|.+|+.+||+-|.-+|-|-|+|..+.|. - ++-.+.+.-. -.+-+..-+.|-+|||||.+.. |+++|-|..
T Consensus 526 ~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR-A~Er~fqll~QvaGRAgR~~~~--G~VvIQT~~ 602 (730)
T COG1198 526 LLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFR-ASERTFQLLMQVAGRAGRAGKP--GEVVIQTYN 602 (730)
T ss_pred HHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcc-hHHHHHHHHHHHHhhhccCCCC--CeEEEEeCC
Confidence 34578999999999999999999999977654 2 2223332211 1334566789999999998666 999999987
Q ss_pred CcHHHHH
Q 000849 86 SELQYYL 92 (1254)
Q Consensus 86 ~~~~~~~ 92 (1254)
.+-....
T Consensus 603 P~hp~i~ 609 (730)
T COG1198 603 PDHPAIQ 609 (730)
T ss_pred CCcHHHH
Confidence 6633333
No 329
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.77 E-value=0.33 Score=55.75 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=68.5
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccc
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~ 542 (1254)
..+.+++++||||+|||+.+.-.+.....+ +. ++.++. |.|.-|.++.+.+.+. .++.+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~---g~--~V~lItaDtyR~gAveQLk~yae~----lgvpv~--------- 265 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ---NR--TVGFITTDTFRSGAVEQFQGYADK----LDVELI--------- 265 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCCccCccHHHHHHHHhhc----CCCCEE---------
Confidence 345677888999999998765544433222 33 444433 5565554444444432 232221
Q ss_pred hhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 543 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 543 ~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
...+|+.+...++... ..++.++|+||=+-+.. .-+..+..+..+.....+..-++.+|||.
T Consensus 266 ---------~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~~-----~d~~~l~EL~~l~~~~~p~~~~LVLsag~- 327 (407)
T PRK12726 266 ---------VATSPAELEEAVQYMT---YVNCVDHILIDTVGRNY-----LAEESVSEISAYTDVVHPDLTCFTFSSGM- 327 (407)
T ss_pred ---------ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCc-----cCHHHHHHHHHHhhccCCceEEEECCCcc-
Confidence 1234665543333311 12457899999885433 22233444444444334445566778875
Q ss_pred ChHHHHHhh
Q 000849 623 NAKDLGEWI 631 (1254)
Q Consensus 623 ~~~~l~~~l 631 (1254)
...++.+.+
T Consensus 328 ~~~d~~~i~ 336 (407)
T PRK12726 328 KSADVMTIL 336 (407)
T ss_pred cHHHHHHHH
Confidence 444555443
No 330
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.74 E-value=0.18 Score=51.45 Aligned_cols=38 Identities=37% Similarity=0.505 Sum_probs=24.9
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHH
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEAL 512 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~L 512 (1254)
+++.||+|+|||..+...+..... .++ .++|+......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~--~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGG--KVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCC--EEEEEECCcch
Confidence 567799999999877554443322 244 78887765444
No 331
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=94.72 E-value=0.61 Score=57.82 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=65.0
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc---cCcEEEEeccccccch------h
Q 000849 474 APTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE---LGMCVVELTVETAMDL------K 544 (1254)
Q Consensus 474 apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~---~~~~v~~~~g~~~~~~------~ 544 (1254)
---|-|||+...-.+...+.. ..-+--++|||+|...+.+ .+.+|.+++... -.+.|..+..-..... +
T Consensus 703 HcMGLGKTlQVvtflhTvL~c-~klg~ktaLvV~PlNt~~N-W~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~ 780 (1567)
T KOG1015|consen 703 HCMGLGKTLQVVTFLHTVLLC-DKLGFKTALVVCPLNTALN-WMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQR 780 (1567)
T ss_pred HhhcccceehhhHHHHHHHHh-hccCCceEEEEcchHHHHH-HHHHHHHhcccccccccceeehhhhccChHHHHHHHHH
Confidence 456999998764433333333 2223338999999977654 366677666532 1345554433222121 1
Q ss_pred hcccCcEEEEcHhhHHHHHHhhh-------c----ccccceeeEEEecccccccCCC
Q 000849 545 LLEKGQIIISTPEKWDALSRRWK-------Q----RKYVQQVSLFIIDELHLIGGQG 590 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l~~l~~~~~-------~----~~~l~~v~liIiDEaH~l~~~~ 590 (1254)
....+-|.|.-++.+..+..... . ...-...++||+||+|.+-.+-
T Consensus 781 W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNek 837 (1567)
T KOG1015|consen 781 WQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEK 837 (1567)
T ss_pred HHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccch
Confidence 22456788888887755442210 0 0012345899999999998543
No 332
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.71 E-value=0.15 Score=56.89 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=17.4
Q ss_pred cceeeeeeccCCCchHHHHHHH
Q 000849 466 NIILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~ 487 (1254)
....+++.||+|+|||.++-..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHH
Confidence 3456788899999999988554
No 333
>PRK12377 putative replication protein; Provisional
Probab=94.67 E-value=0.3 Score=53.60 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=26.8
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRY 517 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~ 517 (1254)
..+++.||+|+|||..+. ++...+.. .+. .++| ++..+|..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~--~g~--~v~~-i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA--KGR--SVIV-VTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH--cCC--CeEE-EEHHHHHHHHH
Confidence 457788999999998764 44444444 122 4544 45556655543
No 334
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.49 Score=55.79 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=65.0
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcch-HHHHHHHHHHHHHhhccccCcEEEEeccccccchh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPI-EALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~-r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 544 (1254)
.+..+.++||||+|||+......-+........+ ..++...+ |.-+.++...+.+.+ |+.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~--v~~i~~d~~rigalEQL~~~a~il----Gvp~~~---------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADK--VALLTTDSYRIGGHEQLRIYGKLL----GVSVRS---------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCe--EEEEecCCcchhHHHHHHHHHHHc----CCceec----------
Confidence 4567899999999999876533333222211112 23444433 444445454544433 333321
Q ss_pred hcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh
Q 000849 545 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~ 624 (1254)
+.++..+...+.. +.+.++++||.+- +.+.-......+..+.......-.++.+|||.. .
T Consensus 254 --------v~~~~dl~~al~~------l~~~d~VLIDTaG-----rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~-~ 313 (420)
T PRK14721 254 --------IKDIADLQLMLHE------LRGKHMVLIDTVG-----MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS-G 313 (420)
T ss_pred --------CCCHHHHHHHHHH------hcCCCEEEecCCC-----CCcchHHHHHHHHHHhccCCCceEEEEEcCCCC-H
Confidence 1223332222222 5567889999862 222223344555554332234456788999963 4
Q ss_pred HHHHH
Q 000849 625 KDLGE 629 (1254)
Q Consensus 625 ~~l~~ 629 (1254)
.++.+
T Consensus 314 ~~~~~ 318 (420)
T PRK14721 314 DTLDE 318 (420)
T ss_pred HHHHH
Confidence 44443
No 335
>PRK14701 reverse gyrase; Provisional
Probab=94.62 E-value=0.013 Score=80.00 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCCcEEEech----hhhhhcCccc-eEEEE-ecCccccCCCCcc-----ccCCHHHHHHHhcccCCCCC
Q 000849 5 DRQLVEDLFCDGHVQVLVSTA----NLAWGVNLPA-HTVII-KGTQVYNPEKGAW-----TELSPLDIMQMLGRAGRPQY 73 (1254)
Q Consensus 5 ~R~~ve~~f~~g~i~vl~~T~----tl~~Gvnlp~-~~vii-~~~~~~~~~~~~~-----~~~~~~~~~qm~GRAGR~~~ 73 (1254)
.|...-+.|++|.++|||||+ .+++|+|+|. .+.|| .|.-.+.-.-..+ .-+.....++|.|||||.|.
T Consensus 366 ~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 366 KNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred hHHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 577888999999999999995 6899999997 55555 3332211000000 00112345677899999998
Q ss_pred C
Q 000849 74 D 74 (1254)
Q Consensus 74 ~ 74 (1254)
.
T Consensus 446 ~ 446 (1638)
T PRK14701 446 P 446 (1638)
T ss_pred c
Confidence 6
No 336
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.59 E-value=0.091 Score=55.29 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=31.9
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
+++.||+|+|||..+...+...+.. +. +++|+... +-..++.+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~--~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GE--PGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CC--cEEEEECC-CCHHHHHHHHHH
Confidence 5677999999999887766665543 44 78888643 445555555543
No 337
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.53 E-value=0.35 Score=52.95 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=24.8
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALA 513 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La 513 (1254)
..+++.|++|+|||..+. ++...+.. .+. .++|+ +...+.
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~--~g~--~v~~i-t~~~l~ 139 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL--RGK--SVLII-TVADIM 139 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh--cCC--eEEEE-EHHHHH
Confidence 357778999999998764 44444544 233 56665 333343
No 338
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=94.52 E-value=0.1 Score=69.33 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCC-cEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCC
Q 000849 5 DRQLVEDLFCDGHV-QVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQY 73 (1254)
Q Consensus 5 ~R~~ve~~f~~g~i-~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~ 73 (1254)
+|..+-+.|++|.. +|+|++..|.-|+|.|....|| ++. ..-|...|+||+||+.|.--
T Consensus 743 ~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vV----f~r------pvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 743 KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLV----FLR------RVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEE----Eec------CCCCHHHHHHHHhhhccCCc
Confidence 56667888999988 6899999999999999766555 232 23578899999999999643
No 339
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.50 E-value=0.12 Score=61.64 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=65.5
Q ss_pred ccCCCchHHHHHHHHHHHHHhh-cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchh--------
Q 000849 474 APTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK-------- 544 (1254)
Q Consensus 474 apTGsGKT~~~~l~il~~l~~~-~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-------- 544 (1254)
-.-|-|||+..+- ++.++... .--| .-+||+|.-.|-+ .++++.+.+. .+++.-+.|+.+...-
T Consensus 593 DeMGLGKTVQsis-vlAhLaE~~nIwG--PFLVVtpaStL~N-WaqEisrFlP---~~k~lpywGs~~eRkiLrKfw~rK 665 (1185)
T KOG0388|consen 593 DEMGLGKTVQSIS-VLAHLAETHNIWG--PFLVVTPASTLHN-WAQEISRFLP---SFKVLPYWGSPSERKILRKFWNRK 665 (1185)
T ss_pred hhhccchhHHHHH-HHHHHHHhccCCC--ceEEeehHHHHhH-HHHHHHHhCc---cceeecCcCChhhhHHHHHhcchh
Confidence 8999999998754 44445442 2334 5788999877643 3555655333 4678878887653311
Q ss_pred ----hcccCcEEEEcHhhH---HHHHHhhhcccccceeeEEEecccccccCCC
Q 000849 545 ----LLEKGQIIISTPEKW---DALSRRWKQRKYVQQVSLFIIDELHLIGGQG 590 (1254)
Q Consensus 545 ----~~~~~~Iiv~Tpe~l---~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~ 590 (1254)
.....+|+|+|+..+ ...+++. +..++|+|||+.+-...
T Consensus 666 nmY~rna~fhVviTSYQlvVtDeky~qkv-------KWQYMILDEAQAIKSSs 711 (1185)
T KOG0388|consen 666 NMYRRNAPFHVVITSYQLVVTDEKYLQKV-------KWQYMILDEAQAIKSSS 711 (1185)
T ss_pred hhhccCCCceEEEEeeeeeechHHHHHhh-------hhhheehhHHHHhhhhh
Confidence 122349999998765 2223321 34689999999887544
No 340
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.50 E-value=0.21 Score=62.08 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=76.2
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEec---cccccchhh
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELT---VETAMDLKL 545 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~---g~~~~~~~~ 545 (1254)
.+++.|.=|=|||.+.-+++...... .. ..++++++|+.+-++..++-..+-+... |.+-.... |..... .
T Consensus 233 ~~vlTAdRGRGKSA~lGi~~~~~~~~--~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~l-g~~~~v~~d~~g~~~~~--~ 306 (758)
T COG1444 233 ALVLTADRGRGKSAALGIALAAAARL--AG-SVRIIVTAPTPANVQTLFEFAGKGLEFL-GYKRKVAPDALGEIREV--S 306 (758)
T ss_pred eEEEEcCCCCcHhHHHhHHHHHHHHh--cC-CceEEEeCCCHHHHHHHHHHHHHhHHHh-CCccccccccccceeee--c
Confidence 57778999999999888777333332 21 3489999999999888777666655443 44322211 111110 0
Q ss_pred cccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh
Q 000849 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624 (1254)
Q Consensus 546 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~ 624 (1254)
-....|=+-+|... . ..-+++|||||=.+. +..+..+. ...+.++||+|+..+
T Consensus 307 ~~~~~i~y~~P~~a-----------~-~~~DllvVDEAAaIp----------lplL~~l~----~~~~rv~~sTTIhGY 359 (758)
T COG1444 307 GDGFRIEYVPPDDA-----------Q-EEADLLVVDEAAAIP----------LPLLHKLL----RRFPRVLFSTTIHGY 359 (758)
T ss_pred CCceeEEeeCcchh-----------c-ccCCEEEEehhhcCC----------hHHHHHHH----hhcCceEEEeeeccc
Confidence 01124556666543 1 116899999998776 44444443 234668999999754
No 341
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.49 E-value=0.069 Score=69.54 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHhC---CCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcc
Q 000849 1 MKRGDRQLVEDLFCD---GHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 77 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~---g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g 77 (1254)
++.++|..+-+.|.+ +..-+|++|.+.+.|+||.+.++|| +|| .+-++....|.+|||-|.|....=
T Consensus 521 ts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VI----iyD------~dWNP~~d~QAidRaHRIGQkk~V 590 (1033)
T PLN03142 521 TGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVI----LYD------SDWNPQVDLQAQDRAHRIGQKKEV 590 (1033)
T ss_pred CCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEE----EeC------CCCChHHHHHHHHHhhhcCCCceE
Confidence 367899999999965 3356789999999999999977777 577 356799999999999999988543
Q ss_pred eEEEEecC
Q 000849 78 EGIIITGH 85 (1254)
Q Consensus 78 ~~~i~~~~ 85 (1254)
.++-+...
T Consensus 591 ~VyRLIt~ 598 (1033)
T PLN03142 591 QVFRFCTE 598 (1033)
T ss_pred EEEEEEeC
Confidence 34433333
No 342
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.42 E-value=0.076 Score=52.80 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=52.8
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCC-ceEEEeCcccccccCCcc---eee--c----------------------c-ccc-
Q 000849 746 VGYLHEGLNKSDQEVVSTLFEAGK-IKVCVMSSSMCWEVPLTA---HLA--T----------------------G-RKM- 795 (1254)
Q Consensus 746 v~~~h~~l~~~~R~~v~~~F~~g~-~~VLVaT~~l~~Gvdip~---~~V--~----------------------~-~~~- 795 (1254)
..++.-+.+..+...+++.|++.. ..||+||..+++|||+|. +.| . + ..+
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~ 103 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPF 103 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCch
Confidence 444555666667788999998754 379999988999999992 333 0 1 111
Q ss_pred ------CCHHHHHHhhcccCCCCCCCCceEEEE
Q 000849 796 ------LILTTLLQMMGHAGRPLLDNSEKCVIL 822 (1254)
Q Consensus 796 ------~s~~~~~Qr~GRaGR~g~d~~G~~iil 822 (1254)
.....+.|.+||+-|...| .|..+++
T Consensus 104 ~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 104 DFVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred hHHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 1235678999999998854 7766655
No 343
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.41 E-value=0.6 Score=57.17 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=78.3
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccC--------cEEEEeccccc-
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG--------MCVVELTVETA- 540 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~--------~~v~~~~g~~~- 540 (1254)
.++.+|=|.|||.+..+.+...+.. .+ .+|+|++|...-+.++++++++.+... + -.+....|+..
T Consensus 190 tV~taPRqrGKS~iVgi~l~~La~f--~G--i~IlvTAH~~~ts~evF~rv~~~le~l-g~~~~fp~~~~iv~vkgg~E~ 264 (752)
T PHA03333 190 TAATVPRRCGKTTIMAIILAAMISF--LE--IDIVVQAQRKTMCLTLYNRVETVVHAY-QHKPWFPEEFKIVTLKGTDEN 264 (752)
T ss_pred eEEEeccCCCcHHHHHHHHHHHHHh--cC--CeEEEECCChhhHHHHHHHHHHHHHHh-ccccccCCCceEEEeeCCeeE
Confidence 3444899999998887666544432 23 499999999999999999888777632 1 11122222111
Q ss_pred c-----chhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEE
Q 000849 541 M-----DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIV 615 (1254)
Q Consensus 541 ~-----~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii 615 (1254)
. +......+.|.+++-. . +...-..++++|+|||+.+.. ..++.++..+. ..+.+++
T Consensus 265 I~f~~p~gak~G~sti~F~Ars-------~--~s~RG~~~DLLIVDEAAfI~~---~~l~aIlP~l~------~~~~k~I 326 (752)
T PHA03333 265 LEYISDPAAKEGKTTAHFLASS-------P--NAARGQNPDLVIVDEAAFVNP---GALLSVLPLMA------VKGTKQI 326 (752)
T ss_pred EEEecCcccccCcceeEEeccc-------C--CCcCCCCCCEEEEECcccCCH---HHHHHHHHHHc------cCCCceE
Confidence 0 0000011234443311 1 111123568999999998873 23333333221 2467788
Q ss_pred EecCCCCChHHHHHhhcC
Q 000849 616 ALSTSLANAKDLGEWIGA 633 (1254)
Q Consensus 616 ~lSATl~~~~~l~~~l~~ 633 (1254)
.+|.+- ..+....+|+.
T Consensus 327 iISS~~-~~~s~tS~L~n 343 (752)
T PHA03333 327 HISSPV-DADSWISRVGE 343 (752)
T ss_pred EEeCCC-CcchHHHHhhh
Confidence 888775 34445555544
No 344
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=94.39 E-value=0.043 Score=51.30 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=42.6
Q ss_pred HHHHHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCccccccCCCC
Q 000849 905 NTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIR 975 (1254)
Q Consensus 905 ~~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~l~~R 975 (1254)
+|++.|...|+|+ + +..+|++|+.++.++++|.-+++++.+....+ ...++.+.|..++ .++..+
T Consensus 1 ~A~~~L~~Lgald--~--~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~-~~~~~~iaa~ls~-~~~f~~ 65 (102)
T PF04408_consen 1 KALELLKSLGALD--E--NGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGC-LDEALIIAAILSV-RSPFIN 65 (102)
T ss_dssp -HHHHHHHTTSB---T--TS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT--HHHHHHHHHHHTS-S--B--
T ss_pred CHHHHHHHCCCCC--C--CCCcCHHHHHHHHCCCchHhHhHhhhcccccc-HHHHHHHHHHHcC-CCcccC
Confidence 4788999999994 2 23788999999999999999999997766655 4555555555555 555444
No 345
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.39 E-value=0.38 Score=58.59 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=78.3
Q ss_pred eeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccC-cEEEEeccccccchhhccc-
Q 000849 471 LQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG-MCVVELTVETAMDLKLLEK- 548 (1254)
Q Consensus 471 iv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~- 548 (1254)
++..|=-.|||.+.. +++..+....++- +++|++|.+..+...++++...+.+..+ ..+....|+ .........
T Consensus 258 VflVPRR~GKTwivv-~iI~~ll~s~~Gi--~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~nG~ 333 (738)
T PHA03368 258 VFLVPRRHGKTWFLV-PLIALALATFRGI--KIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPDGS 333 (738)
T ss_pred EEEecccCCchhhHH-HHHHHHHHhCCCC--EEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecCCC
Confidence 333799999999776 5555444322444 9999999999999999999887664311 122222342 211011112
Q ss_pred -CcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCC
Q 000849 549 -GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSL 621 (1254)
Q Consensus 549 -~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl 621 (1254)
+.|.+++ .+. .+...=+.++++|||||+.+.+ ..+..++..+. ..+.++|.+|.|-
T Consensus 334 kstI~FaS-------arn-tNsiRGqtfDLLIVDEAqFIk~---~al~~ilp~l~------~~n~k~I~ISS~N 390 (738)
T PHA03368 334 RSTIVFAS-------SHN-TNGIRGQDFNLLFVDEANFIRP---DAVQTIMGFLN------QTNCKIIFVSSTN 390 (738)
T ss_pred ccEEEEEe-------ccC-CCCccCCcccEEEEechhhCCH---HHHHHHHHHHh------ccCccEEEEecCC
Confidence 3566654 111 1111234789999999998874 23333333221 3588999999884
No 346
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.31 E-value=0.27 Score=53.62 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=15.6
Q ss_pred cceeeeeeccCCCchHHHHHH
Q 000849 466 NIILVLQLAPTGSGKTICAEF 486 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l 486 (1254)
....+++.||+|+|||..+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 334567779999999977643
No 347
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=94.31 E-value=0.055 Score=69.34 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHH----hCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCc
Q 000849 1 MKRGDRQLVEDLF----CDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 76 (1254)
Q Consensus 1 l~~~~R~~ve~~f----~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~ 76 (1254)
++..+|...|+.. +.+.-.|+|||...++|||+..+.+|- ..-++..+.|++||.+|.|.+..
T Consensus 474 f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mIT-------------e~aPidSLIQR~GRv~R~g~~~~ 540 (733)
T COG1203 474 FTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLIT-------------ELAPIDSLIQRAGRVNRHGKKEN 540 (733)
T ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeee-------------cCCCHHHHHHHHHHHhhcccccC
Confidence 3567787777743 567899999999999999998655543 33568899999999999998888
Q ss_pred ceEEEEecC
Q 000849 77 GEGIIITGH 85 (1254)
Q Consensus 77 g~~~i~~~~ 85 (1254)
|.+++....
T Consensus 541 ~~~~v~~~~ 549 (733)
T COG1203 541 GKIYVYNDE 549 (733)
T ss_pred CceeEeecc
Confidence 999988765
No 348
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.45 Score=59.83 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=64.9
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccchh
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLK 544 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 544 (1254)
+.++.++||||+|||+............ ...+ ++.++. +.|.-+.++.+.+.+.+ |+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~k--kV~lit~Dt~RigA~eQL~~~a~~~----gvpv~----------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-EGAD--QLALLTTDSFRIGALEQLRIYGRIL----GVPVH----------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCC--eEEEecCcccchHHHHHHHHHHHhC----CCCcc-----------
Confidence 5688999999999988765433322222 1112 444443 34444445455555433 32221
Q ss_pred hcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 545 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 545 ~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
++.+|+.+...++. +.+.++|+||=+=+...+ ..+...+..+.....+...++.+|||..
T Consensus 247 -------~~~~~~~l~~al~~------~~~~D~VLIDTAGRs~~d-----~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 247 -------AVKDAADLRFALAA------LGDKHLVLIDTVGMSQRD-----RNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred -------ccCCHHHHHHHHHH------hcCCCEEEEeCCCCCccC-----HHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 12356655444443 345689999988654422 2233444444433345667888999963
No 349
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.2 Score=59.59 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.3
Q ss_pred eeeeeeccCCCchHHHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~ 487 (1254)
+.+++.||.|+|||.++...
T Consensus 41 ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788899999999988554
No 350
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.92 E-value=0.44 Score=57.30 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=65.8
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL 545 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 545 (1254)
....+++.||+|+|||+.....+...... +. +++|+.-. +-..|+..+..+ ++ ....
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~--~vlYvs~E-es~~qi~~ra~r-lg----~~~~------------ 135 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA---GG--KVLYVSGE-ESASQIKLRAER-LG----LPSD------------ 135 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEcc-ccHHHHHHHHHH-cC----CChh------------
Confidence 34567777999999998776655543322 44 89998854 334565555432 32 2100
Q ss_pred cccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-C----Cc--cHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q----GG--PVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 546 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~----~g--~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
++.+.....+..+...... .+.+++|||+++.+.. + .| ..+..++..+..+.+. .++.+++.+
T Consensus 136 ----~l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~--~~itvilv~ 205 (446)
T PRK11823 136 ----NLYLLAETNLEAILATIEE----EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQ--RGIAVFLVG 205 (446)
T ss_pred ----cEEEeCCCCHHHHHHHHHh----hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEe
Confidence 1233333334444433221 2578999999997753 1 12 2334445556555543 356666654
No 351
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.89 E-value=0.54 Score=51.52 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=21.2
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
.+++.||+|+|||..+... .+.+.. .+. +++|+.-
T Consensus 47 ~l~l~Gp~G~GKThLl~a~-~~~~~~--~~~--~v~y~~~ 81 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAA-CAELSQ--RGR--AVGYVPL 81 (235)
T ss_pred eEEEECCCCCCHHHHHHHH-HHHHHh--CCC--eEEEEEH
Confidence 4556699999999876533 333332 233 6676644
No 352
>PRK08116 hypothetical protein; Validated
Probab=93.89 E-value=0.68 Score=51.68 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=28.0
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQR 516 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~ 516 (1254)
+..+++.|++|+|||..+. ++.+.+.. . +. .++|+ +...+..++
T Consensus 114 ~~gl~l~G~~GtGKThLa~-aia~~l~~-~-~~--~v~~~-~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAA-CIANELIE-K-GV--PVIFV-NFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHH-c-CC--eEEEE-EHHHHHHHH
Confidence 3458888999999998774 56666655 1 33 55555 444554443
No 353
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.89 E-value=0.15 Score=65.41 Aligned_cols=90 Identities=22% Similarity=0.162 Sum_probs=63.4
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMC 531 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~ 531 (1254)
+++.|++++..-.. .++|.|..|||||.+...-+...+... .+.. ++++++.|+..|.++.+++.+.++..
T Consensus 2 Ln~~Q~~av~~~~~--~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~--~IL~vTFt~~Aa~em~~Rl~~~l~~~---- 73 (664)
T TIGR01074 2 LNPQQQEAVEYVTG--PCLVLAGAGSGKTRVITNKIAYLIQNCGYKAR--NIAAVTFTNKAAREMKERVAKTLGKG---- 73 (664)
T ss_pred CCHHHHHHHhCCCC--CEEEEecCCCCHHHHHHHHHHHHHHhcCCCHH--HeEEEeccHHHHHHHHHHHHHHhCcc----
Confidence 56677777765443 456669999999998887777776541 1233 79999999999999998888755421
Q ss_pred EEEeccccccchhhcccCcEEEEcHhhH-HHHHHh
Q 000849 532 VVELTVETAMDLKLLEKGQIIISTPEKW-DALSRR 565 (1254)
Q Consensus 532 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 565 (1254)
...++-|+|-..| ..+++.
T Consensus 74 ---------------~~~~v~v~TfHs~a~~il~~ 93 (664)
T TIGR01074 74 ---------------EARGLTISTFHTLGLDIIKR 93 (664)
T ss_pred ---------------ccCCeEEEeHHHHHHHHHHH
Confidence 1236788898887 444444
No 354
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=93.86 E-value=0.19 Score=63.69 Aligned_cols=163 Identities=21% Similarity=0.224 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecC----ccccCCCCc----cccCCHHHHHHHhcccCCCC
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGT----QVYNPEKGA----WTELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~----~~~~~~~~~----~~~~~~~~~~qm~GRAGR~~ 72 (1254)
|+.++.+.|=.-.-.|.=+||+||..-+-.|-+|++.-||-.- ..||+..+. -..+|-..-.|+.|||||.
T Consensus 454 ~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv- 532 (924)
T KOG0920|consen 454 IPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV- 532 (924)
T ss_pred CChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-
Confidence 3455555555556788899999999999999999999888433 678987652 1126788999999999995
Q ss_pred CCCcceEEEEecCCcHHHHHHhhc-CCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCC
Q 000849 73 YDSYGEGIIITGHSELQYYLSLMN-QQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLS 151 (1254)
Q Consensus 73 ~~~~g~~~i~~~~~~~~~~~~~~~-~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~ 151 (1254)
..|.+|=+.+.. .|.+++. .+.| .-+...|.+..+..- +-...+..+||.... .-|.
T Consensus 533 --~~G~cy~L~~~~---~~~~~~~~~q~P--EilR~pL~~l~L~iK----~l~~~~~~~fLskal------dpP~----- 590 (924)
T KOG0920|consen 533 --RPGICYHLYTRS---RYEKLMLAYQLP--EILRTPLEELCLHIK----VLEQGSIKAFLSKAL------DPPP----- 590 (924)
T ss_pred --cCCeeEEeechh---hhhhcccccCCh--HHHhChHHHhhheee----eccCCCHHHHHHHhc------CCCC-----
Confidence 348888776643 3444433 2222 222222222222221 122333335554332 2232
Q ss_pred CCcCchhHHHHHHHHHHHHHHHhhhcCcccccCccCceeecccHHHHHHHhccCCc
Q 000849 152 PEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPI 207 (1254)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t~e~~~l~~l~~~~~~ 207 (1254)
.+-+..|+..|.+-|-+..++ |...|...+.++|.
T Consensus 591 ------------~~~v~~a~~~L~~igaL~~~e---------~LT~LG~~la~lPv 625 (924)
T KOG0920|consen 591 ------------ADAVDLAIERLKQIGALDESE---------ELTPLGLHLASLPV 625 (924)
T ss_pred ------------hHHHHHHHHHHHHhccccCcc---------cchHHHHHHHhCCC
Confidence 345788999999999887552 34445555655553
No 355
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.72 E-value=1.8 Score=61.30 Aligned_cols=220 Identities=11% Similarity=0.072 Sum_probs=107.7
Q ss_pred ccCCChHHHHHHhhCC--cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccc
Q 000849 450 MFARLPAKQRITAALP--NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 450 ~f~~~~~Q~~~~~~i~--~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~ 527 (1254)
.|.+...|++++..+- ...+.+++|+.|+|||.+. -++...+.. .+. +|+.++|+-.-+....+..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--~G~--~V~~lAPTgrAA~~L~e~~------- 494 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--QGY--EIQIITAGSLSAQELRQKI------- 494 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--cCC--eEEEEeCCHHHHHHHHHHh-------
Confidence 4677788888888774 3478899999999999764 334444443 344 8999999987665543321
Q ss_pred cCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhh
Q 000849 528 LGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQ 607 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~ 607 (1254)
|.....+. .....+... .-..|...| +. ....+..-++|||||+-+++. ..+..++.. .
T Consensus 495 -g~~A~Ti~----~~l~~l~~~-~~~~tv~~f---l~---~~~~l~~~~vlIVDEAsMl~~---~~~~~Ll~~---a--- 553 (1960)
T TIGR02760 495 -PRLASTFI----TWVKNLFND-DQDHTVQGL---LD---KSSPFSNKDIFVVDEANKLSN---NELLKLIDK---A--- 553 (1960)
T ss_pred -cchhhhHH----HHHHhhccc-ccchhHHHh---hc---ccCCCCCCCEEEEECCCCCCH---HHHHHHHHH---H---
Confidence 11110000 000000011 111222222 11 122355678999999998872 111212211 1
Q ss_pred cCCCcEEEEecCC--CCC--h-HHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhh
Q 000849 608 VENKIRIVALSTS--LAN--A-KDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAK 682 (1254)
Q Consensus 608 ~~~~~rii~lSAT--l~~--~-~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 682 (1254)
...+.|+|++.=+ ++. + .-+.. +.........+....+. .-.+.+.. .+...+... +.........
T Consensus 554 ~~~garvVlvGD~~QL~sV~aG~~f~~-L~~~gv~t~~l~~i~rq-~~~v~i~~---~~~~~r~~~----ia~~y~~L~~ 624 (1960)
T TIGR02760 554 EQHNSKLILLNDSAQRQGMSAGSAIDL-LKEGGVTTYAWVDTKQQ-KASVEISE---AVDKLRVDY----IASAWLDLTP 624 (1960)
T ss_pred hhcCCEEEEEcChhhcCccccchHHHH-HHHCCCcEEEeeccccc-Ccceeeec---cCchHHHHH----HHHHHHhccc
Confidence 1356888877533 111 1 11221 11111112222211111 00111111 111122111 2222223223
Q ss_pred cCCCeEEEecChhhHHHHHHHHHHHhhcc
Q 000849 683 NEKPALVFVPSRKYARLTAVDLMIYSCKD 711 (1254)
Q Consensus 683 ~~~~~lVF~~s~~~~~~la~~L~~~~~~~ 711 (1254)
....++|+..+.++...+...+...+...
T Consensus 625 ~r~~tliv~~t~~dr~~Ln~~iR~~L~~~ 653 (1960)
T TIGR02760 625 DRQNSQVLATTHREQQDLTQIIRNALKQE 653 (1960)
T ss_pred ccCceEEEcCCcHHHHHHHHHHHHHHHHc
Confidence 45569999999999999998888877543
No 356
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.69 E-value=0.26 Score=59.77 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=26.1
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
.+++.||+|+|||..+. ++...+....++. +++|+.. ..+..+
T Consensus 150 ~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~--~v~yi~~-~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLH-AIGNYILEKNPNA--KVVYVTS-EKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHhCCCC--eEEEEEH-HHHHHH
Confidence 35666999999998764 4444444422333 7777744 444444
No 357
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.63 E-value=0.65 Score=58.32 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=22.9
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhc-CC--CCcEEEEE
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRAS-ET--GVMRAVYI 506 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~-~~--~~~~vl~i 506 (1254)
..+.+.|+||+|||.+.-.. ++.+.... .. ..+.+++|
T Consensus 782 nvLYIyG~PGTGKTATVK~V-LrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV-IQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHHHHhhccCCCceEEEE
Confidence 34568899999999887554 34443211 11 12456777
No 358
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.23 Score=59.77 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=17.2
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+++.||.|+|||.++.+.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARII 55 (491)
T ss_pred CceEEEECCCCccHHHHHHHH
Confidence 456888899999999988554
No 359
>PRK06893 DNA replication initiation factor; Validated
Probab=93.60 E-value=0.41 Score=52.23 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=25.7
Q ss_pred ceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 573 QQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 573 ~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
.+.+++|+||+|.+..... .-+.+...+.... ..+.+++++|++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~---~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEE-WELAIFDLFNRIK---EQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCChH-HHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 4678999999998864221 1122333333332 23445667777653
No 360
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.59 E-value=0.25 Score=58.91 Aligned_cols=140 Identities=20% Similarity=0.295 Sum_probs=91.9
Q ss_pred hCCCCcEEEechhhhhhcCccceEEEEe-cC---ccccCCCC----ccccCCHHHHHHHhcccCCCCCCCcceEEEEecC
Q 000849 14 CDGHVQVLVSTANLAWGVNLPAHTVIIK-GT---QVYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 85 (1254)
Q Consensus 14 ~~g~i~vl~~T~tl~~Gvnlp~~~vii~-~~---~~~~~~~~----~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~~ 85 (1254)
..|.=+|||||+...-.+.+|....||- |. ++|++..| ...|+|-..-.|++|||||.| -|.+|=+.+.
T Consensus 620 ~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe 696 (1042)
T KOG0924|consen 620 EGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTE 696 (1042)
T ss_pred CCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhh
Confidence 4677899999999999999999999983 22 67998887 345789999999999999964 3788877654
Q ss_pred CcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcCchhHHHHHHH
Q 000849 86 SELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITD 165 (1254)
Q Consensus 86 ~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~~~~~~~~~~ 165 (1254)
+- +...++..+.| .-...++.+.++-..++|. +| .+.--|+- -| . ++
T Consensus 697 ~a--y~~eml~stvP--EIqRTNl~nvVLlLkslgV----~d---ll~FdFmD-----~P-------------p----ed 743 (1042)
T KOG0924|consen 697 DA--YKNEMLPSTVP--EIQRTNLSNVVLLLKSLGV----DD---LLKFDFMD-----PP-------------P----ED 743 (1042)
T ss_pred hH--HHhhcccCCCc--hhhhcchhhHHHHHHhcCh----hh---hhCCCcCC-----CC-------------H----HH
Confidence 21 22333444433 1122366666666666654 22 33333331 11 1 45
Q ss_pred HHHHHHHHhhhcCcccccCccCceeec
Q 000849 166 LIHTAANVLDRNNLVKYGRKSGYFQSE 192 (1254)
Q Consensus 166 ~~~~~~~~L~~~~~i~~~~~~~~~~~t 192 (1254)
.+.+++-.|...|-|.. +|.+.+.
T Consensus 744 ~~~~sly~Lw~LGAl~~---~g~LT~l 767 (1042)
T KOG0924|consen 744 NLLNSLYQLWTLGALDN---TGQLTPL 767 (1042)
T ss_pred HHHHHHHHHHHhhcccc---CCccchh
Confidence 67788888888887754 3555554
No 361
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.53 E-value=0.62 Score=54.42 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=63.8
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKL 545 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 545 (1254)
....+++.|++|+|||+.....+...... ++ +++|+.-... ..|+..+..+ + |...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~---g~--~VlYvs~EEs-~~qi~~Ra~r-l----g~~~------------- 136 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR---GG--KVLYVSGEES-PEQIKLRADR-L----GIST------------- 136 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CC--eEEEEECCcC-HHHHHHHHHH-c----CCCc-------------
Confidence 34567777999999998776554433322 34 8999875433 3454444332 2 2111
Q ss_pred cccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-C----Cc--cHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 546 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q----GG--PVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 546 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~----~g--~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
.++.+.....+..+.+... -.+.++||||+++.+.. + .| ..+..++.++..+.+. .++.+++.+
T Consensus 137 ---~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~--~~itvilvg 207 (372)
T cd01121 137 ---ENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKE--RNIPIFIVG 207 (372)
T ss_pred ---ccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 1122222222333333321 12578999999997752 1 12 2344455566665543 355555554
No 362
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.53 E-value=0.38 Score=60.05 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=69.8
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhc------CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccch
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRAS------ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~------~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 543 (1254)
-|+.-.-|-|||......++..-.... ..+ ..++++|+ ++..|....+ ....+.....+..++| ...+.
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~k--ttLivcp~-s~~~qW~~el-ek~~~~~~l~v~v~~g-r~kd~ 229 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFK--TTLIVCPT-SLLTQWKTEL-EKVTEEDKLSIYVYHG-RTKDK 229 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcchhhccccC--ceeEecch-HHHHHHHHHH-hccCCccceEEEEecc-ccccc
Confidence 344467799999887655553322211 222 57888887 4556666666 3344434677888888 55556
Q ss_pred hhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccC
Q 000849 544 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 588 (1254)
Q Consensus 544 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~ 588 (1254)
..+.+.+|+++||..+.. . ...--..-.+|+||+|.+..
T Consensus 230 ~el~~~dVVltTy~il~~---~---~l~~i~w~Riildea~~ikn 268 (674)
T KOG1001|consen 230 SELNSYDVVLTTYDILKN---S---PLVKIKWLRIVLDEAHTIKN 268 (674)
T ss_pred chhcCCceEEeeHHHhhc---c---cccceeEEEEEeccccccCC
Confidence 677788999999998842 1 11113456799999999985
No 363
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.3 Score=59.99 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=17.0
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+++.||.|+|||.++...
T Consensus 37 ~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456788899999999888544
No 364
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.46 E-value=0.35 Score=53.92 Aligned_cols=148 Identities=19% Similarity=0.187 Sum_probs=82.3
Q ss_pred HhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-cccc
Q 000849 461 TAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVET 539 (1254)
Q Consensus 461 ~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~ 539 (1254)
+.-+.....+++-|+||.|||..+...+.+.... .+. .|+|++.-- -..+++.++-.... ++....+ .|..
T Consensus 13 lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~--~~~--~vly~SlEm-~~~~l~~R~la~~s---~v~~~~i~~g~l 84 (259)
T PF03796_consen 13 LGGLRPGELTVIAARPGVGKTAFALQIALNAALN--GGY--PVLYFSLEM-SEEELAARLLARLS---GVPYNKIRSGDL 84 (259)
T ss_dssp HSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHT--TSS--EEEEEESSS--HHHHHHHHHHHHH---TSTHHHHHCCGC
T ss_pred hcCCCcCcEEEEEecccCCchHHHHHHHHHHHHh--cCC--eEEEEcCCC-CHHHHHHHHHHHhh---cchhhhhhcccc
Confidence 3334455677788999999999887777766654 123 788887521 12233333332222 2211111 1221
Q ss_pred ccc--------hhhcccCcEEE-E----cHhhHHHHHHhhhcccccceeeEEEecccccccCC-----CccHHHHHHHHH
Q 000849 540 AMD--------LKLLEKGQIII-S----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVARM 601 (1254)
Q Consensus 540 ~~~--------~~~~~~~~Iiv-~----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~~e~~~~~l 601 (1254)
... ...+....+.+ . |++.+...++..... ...+++||||=+|.+... +...+..+..++
T Consensus 85 ~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~--~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~L 162 (259)
T PF03796_consen 85 SDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE--GKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISREL 162 (259)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH--STTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh--ccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 111 11223334443 2 444555555544332 268899999999998862 334566677788
Q ss_pred HHHHhhcCCCcEEEEecCC
Q 000849 602 RYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 602 ~~~~~~~~~~~rii~lSAT 620 (1254)
+.+... .++.+|++|..
T Consensus 163 k~lA~~--~~i~vi~~sQl 179 (259)
T PF03796_consen 163 KALAKE--LNIPVIALSQL 179 (259)
T ss_dssp HHHHHH--HTSEEEEEEEB
T ss_pred HHHHHH--cCCeEEEcccc
Confidence 877664 47888888765
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.45 E-value=0.8 Score=51.21 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=35.0
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKF 524 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~ 524 (1254)
.+..++++||+|+|||+.+.-.+.. +.. .+. +++++. +.|.-+.+....|.+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~-l~~--~g~--~V~li~~D~~r~~a~~ql~~~~~~~ 126 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK-LKK--QGK--SVLLAAGDTFRAAAIEQLEEWAKRL 126 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-HHh--cCC--EEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 4567888899999999876544433 222 234 665554 56776677677776644
No 366
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.43 E-value=0.35 Score=54.50 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=31.3
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEE--cchHHHHHHHHHHHHHh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYI--APIEALAKQRYCDWERK 523 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i--~P~r~La~q~~~~~~~~ 523 (1254)
.+.+++++||||+|||+...-.+...... ..+. +|.++ =|.+.-+.++...|.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~-~g~~--~V~li~~D~~r~~a~eql~~~~~~ 249 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE-HGNK--KVALITTDTYRIGAVEQLKTYAKI 249 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH-cCCC--eEEEEECCccchhHHHHHHHHHHH
Confidence 45678899999999998765433332221 0112 44433 24455555555556543
No 367
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.41 E-value=0.19 Score=56.40 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=14.9
Q ss_pred eeeeeeccCCCchHHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEF 486 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l 486 (1254)
..+++.||+|+|||+.+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3566779999999987754
No 368
>PRK04328 hypothetical protein; Provisional
Probab=93.40 E-value=0.66 Score=51.31 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=34.4
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHH
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE 521 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~ 521 (1254)
++.+..+++.||+|+|||..+...+.+.+.. +. +++|+. +.+-..++.+.+.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge--~~lyis-~ee~~~~i~~~~~ 71 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GE--PGVYVA-LEEHPVQVRRNMR 71 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CC--cEEEEE-eeCCHHHHHHHHH
Confidence 4567778888999999999887777766554 44 677776 3233334444433
No 369
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.40 E-value=0.29 Score=60.80 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=16.6
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+|+.||.|+|||.++...
T Consensus 38 ~HAyLFtGPpGvGKTTlAriL 58 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIF 58 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 455788899999999887543
No 370
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=0.25 Score=60.92 Aligned_cols=41 Identities=15% Similarity=0.295 Sum_probs=26.0
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
.....+++||||+|++... ....+ ....+..+....+|+.+
T Consensus 115 ~~~~~KVvIIDEah~Lt~~---A~NAL----LK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 115 AQSRYRIFIVDEAHMVTTA---GFNAL----LKIVEEPPEHLIFIFAT 155 (584)
T ss_pred hcCCceEEEEECCCcCCHH---HHHHH----HHHHhcCCCCeEEEEEe
Confidence 4567899999999999732 22323 33333445566777665
No 371
>CHL00181 cbbX CbbX; Provisional
Probab=93.35 E-value=0.5 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=17.7
Q ss_pred cceeeeeeccCCCchHHHHHHH
Q 000849 466 NIILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~ 487 (1254)
....+++.||+|+|||.++-..
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3456888999999999988654
No 372
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.31 E-value=0.48 Score=56.68 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=24.5
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
.+++.||+|+|||..+ .++.+.+....++. +++|+..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~--~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENNPNA--KVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhCCCC--cEEEEEH
Confidence 3566799999999876 45555555422233 7888753
No 373
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.29 E-value=0.22 Score=48.70 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=26.9
Q ss_pred eeEEEecccccccCCC----ccHHHHHHHHHHHHHhhcCC---CcEEEEecCCC
Q 000849 575 VSLFIIDELHLIGGQG----GPVLEVIVARMRYIASQVEN---KIRIVALSTSL 621 (1254)
Q Consensus 575 v~liIiDEaH~l~~~~----g~~~e~~~~~l~~~~~~~~~---~~rii~lSATl 621 (1254)
-.++++||+|.+.... ...-..++..+......... ++.+|+.|.++
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 4899999999988632 22223334444444333232 46666666663
No 374
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.28 E-value=0.28 Score=63.06 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=26.3
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
.....+++||||+|.|... . ...|.++++..+....+|+.+
T Consensus 117 ~~~~~KV~IIDEad~lt~~---a----~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 117 AESRYKIFIIDEAHMVTPQ---G----FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hcCCceEEEEechhhcCHH---H----HHHHHHHHhCCCCCeEEEEEe
Confidence 3467899999999999731 1 223333444445667777765
No 375
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.28 E-value=0.67 Score=55.16 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=64.4
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccch
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 543 (1254)
.+.+++++|++|+|||+.+.-.+. .+.. .+. +++++. +.|.-+.++...+.+.. ++.+..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~-~L~~--~g~--kV~lV~~D~~R~aa~eQL~~la~~~----gvp~~~~~~--~~-- 160 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR-YFKK--KGL--KVGLVAADTYRPAAYDQLKQLAEKI----GVPFYGDPD--NK-- 160 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH-HHHH--cCC--eEEEecCCCCCHHHHHHHHHHHHHc----CCcEEecCC--cc--
Confidence 466888999999999987754443 3333 233 444443 44555555555555433 333221100 00
Q ss_pred hhcccCcEEEEcHhh-HHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 544 KLLEKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 544 ~~~~~~~Iiv~Tpe~-l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
.|.. +...++. ....++||||.+-+.. .-+.++..++.+.....+..-++.++||..
T Consensus 161 -----------d~~~i~~~al~~------~~~~DvVIIDTAGr~~-----~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 161 -----------DAVEIAKEGLEK------FKKADVIIVDTAGRHA-----LEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred -----------CHHHHHHHHHHH------hhcCCEEEEECCCccc-----chHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 1111 1222222 2234899999995443 122344445554444456667788888764
No 376
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=0.52 Score=59.84 Aligned_cols=39 Identities=10% Similarity=0.342 Sum_probs=24.2
Q ss_pred cceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEe
Q 000849 572 VQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVAL 617 (1254)
Q Consensus 572 l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~l 617 (1254)
-.+.+++||||+|+|.. .....+ .+.....+..+++|+.
T Consensus 117 ~gk~KViIIDEAh~LT~---eAqNAL----LKtLEEPP~~vrFILa 155 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSR---SSFNAL----LKTLEEPPEHVKFLLA 155 (944)
T ss_pred cCCcEEEEEechHhcCH---HHHHHH----HHHHhccCCCeEEEEE
Confidence 35688999999999862 122222 3333333556777776
No 377
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.20 E-value=0.47 Score=48.58 Aligned_cols=46 Identities=9% Similarity=0.092 Sum_probs=28.9
Q ss_pred ccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCC
Q 000849 569 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSL 621 (1254)
Q Consensus 569 ~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl 621 (1254)
.......+++||||+|.|..+ ....+.+..+..+.+..+|++|..+
T Consensus 97 ~~~~~~~KviiI~~ad~l~~~-------a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLTEE-------AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp S-TTSSSEEEEEETGGGS-HH-------HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHhcCCceEEEeehHhhhhHH-------HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 334467899999999988721 2333444455556778888887654
No 378
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.17 E-value=0.19 Score=58.90 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=16.7
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+++.||.|+|||..+...
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~l 58 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLL 58 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHH
Confidence 345788899999999887543
No 379
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.16 E-value=0.95 Score=50.81 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEec---cccc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELT---VETA 540 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~---g~~~ 540 (1254)
+.....+++.||||+|||..+...+.+.... .+. +++|+.-- .-..+...++...+. +..+.... +...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~--~vl~iS~E-~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~ 98 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ--HGV--RVGTISLE-EPVVRTARRLLGQYA---GKRLHLPDTVFIYTL 98 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCc--eEEEEEcc-cCHHHHHHHHHHHHh---CCCcccCCccccccH
Confidence 4455677888999999998776555544332 133 77777632 223444444443322 22211100 0000
Q ss_pred cc----hhhcc-cCcEEEE------cHhhHHHHHHhhhcccccceeeEEEecccccccCCC---c---cHHHHHHHHHHH
Q 000849 541 MD----LKLLE-KGQIIIS------TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG---G---PVLEVIVARMRY 603 (1254)
Q Consensus 541 ~~----~~~~~-~~~Iiv~------Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~---g---~~~e~~~~~l~~ 603 (1254)
.. ...+. ...+.+- |++.+...++... .-..+++||||.++.+.... . ..+..++..++.
T Consensus 99 ~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~---~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~ 175 (271)
T cd01122 99 EEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA---VSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRG 175 (271)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH---hcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHH
Confidence 00 01111 1223222 3344433333221 12368899999999886532 1 123445556666
Q ss_pred HHhhcCCCcEEEEecCC
Q 000849 604 IASQVENKIRIVALSTS 620 (1254)
Q Consensus 604 ~~~~~~~~~rii~lSAT 620 (1254)
+... .++.++++|-+
T Consensus 176 la~~--~~vtvll~sq~ 190 (271)
T cd01122 176 FATE--HGIHITLVSHL 190 (271)
T ss_pred HHHH--hCCEEEEEecc
Confidence 5543 45667777644
No 380
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=93.15 E-value=0.22 Score=49.56 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=50.6
Q ss_pred HHHHHHHh-CCCCcEEEechhhhhhcCccc---eEEEEecCccccCCC----------------Cccc----cCCHHHHH
Q 000849 7 QLVEDLFC-DGHVQVLVSTANLAWGVNLPA---HTVIIKGTQVYNPEK----------------GAWT----ELSPLDIM 62 (1254)
Q Consensus 7 ~~ve~~f~-~g~i~vl~~T~tl~~Gvnlp~---~~vii~~~~~~~~~~----------------~~~~----~~~~~~~~ 62 (1254)
..+-+.|+ ++.-.||++|..++.|||+|. +.|||-|..+-++.. ..|. +.....+.
T Consensus 37 ~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 116 (141)
T smart00492 37 GKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPDAMRTLA 116 (141)
T ss_pred HHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 33344454 433479999988999999997 488898875543321 1122 23357889
Q ss_pred HHhcccCCCCCCCcceEEEE
Q 000849 63 QMLGRAGRPQYDSYGEGIII 82 (1254)
Q Consensus 63 qm~GRAGR~~~~~~g~~~i~ 82 (1254)
|.+||+=|...| .|.++++
T Consensus 117 Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 117 QCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred HHhCccccCcCc-eEEEEEE
Confidence 999999996555 7766665
No 381
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.04 E-value=0.15 Score=66.76 Aligned_cols=95 Identities=24% Similarity=0.412 Sum_probs=66.2
Q ss_pred HHHHHHHHHhCCCCcEEEechhhhhhcCccce---EEEEecCccccCC---------------CCcccc----CCHHHHH
Q 000849 5 DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAH---TVIIKGTQVYNPE---------------KGAWTE----LSPLDIM 62 (1254)
Q Consensus 5 ~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~---~vii~~~~~~~~~---------------~~~~~~----~~~~~~~ 62 (1254)
.|..+.+.|++|.-.||+||..++.|||+|.. .|||-+.-+-+|. ++.|.. .....++
T Consensus 713 ~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~ 792 (850)
T TIGR01407 713 SRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLR 792 (850)
T ss_pred cHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHH
Confidence 67888899999999999999999999999985 5667665554332 122333 2457899
Q ss_pred HHhcccCCCCCCCcceEEEEecCCcHHHHHHhhcCCCC
Q 000849 63 QMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLP 100 (1254)
Q Consensus 63 qm~GRAGR~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 100 (1254)
|.+||.=|...| .|.++|+-..-....|-+.+-...|
T Consensus 793 Qa~GRlIRs~~D-~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 793 QALGRLIRREND-RGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred HhhccccccCCc-eEEEEEEccccccchHHHHHHHhCC
Confidence 999999997665 7876666444333456544433333
No 382
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.97 E-value=0.33 Score=60.17 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=16.9
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+|+.||.|+|||.++...
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 356788899999999887543
No 383
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.95 E-value=1.5 Score=51.33 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=33.5
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHH
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWER 522 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~ 522 (1254)
.+.+++++||||+|||+.+...+...... .+. ++.++. +.|+.+.++..++.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~--~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGK--SVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCC--eEEEecccchhhhHHHHHHHHHH
Confidence 34578888999999998876555433222 233 454443 567777776666654
No 384
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.93 E-value=0.67 Score=51.03 Aligned_cols=143 Identities=21% Similarity=0.240 Sum_probs=74.0
Q ss_pred hhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc---chHHHHHHHHHHHHHhhccccCcEEEE-ecc
Q 000849 462 AALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA---PIEALAKQRYCDWERKFGKELGMCVVE-LTV 537 (1254)
Q Consensus 462 ~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~---P~r~La~q~~~~~~~~~~~~~~~~v~~-~~g 537 (1254)
.-+.....+++.|++|+|||..+...+.+.... .+. +++|+. |...++...... .. ++.... ..+
T Consensus 8 ~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--~g~--~vly~s~E~~~~~~~~r~~~~----~~---~~~~~~~~~~ 76 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKK--QGK--PVLFFSLEMSKEQLLQRLLAS----ES---GISLSKLRTG 76 (242)
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--ceEEEeCCCCHHHHHHHHHHH----hc---CCCHHHHhcC
Confidence 345667788889999999998776665555443 133 788887 333333332211 11 111110 111
Q ss_pred cccc-c-------hhhcccCcEEE-----EcHhhHHHHHHhhhcccccceeeEEEecccccccCC-----CccHHHHHHH
Q 000849 538 ETAM-D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVA 599 (1254)
Q Consensus 538 ~~~~-~-------~~~~~~~~Iiv-----~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~~e~~~~ 599 (1254)
.... . ...+....+.+ .|++.+...++.... -.++++||||=++.+... +...+..++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~---~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~ 153 (242)
T cd00984 77 SLSDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKK---EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISR 153 (242)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHH
Confidence 1110 0 01112224444 244445443433221 127899999999987542 1223445666
Q ss_pred HHHHHHhhcCCCcEEEEecCC
Q 000849 600 RMRYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 600 ~l~~~~~~~~~~~rii~lSAT 620 (1254)
.++.+... .++.++++|-.
T Consensus 154 ~L~~la~~--~~~~ii~~~q~ 172 (242)
T cd00984 154 SLKLLAKE--LNVPVIALSQL 172 (242)
T ss_pred HHHHHHHH--hCCeEEEeccc
Confidence 77766543 46777777644
No 385
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.21 Score=63.45 Aligned_cols=134 Identities=21% Similarity=0.285 Sum_probs=85.7
Q ss_pred hCCCCcEEEechhhhhhcCccceEEEEecC----ccccCCCCc----cccCCHHHHHHHhcccCCCCCCCcceEEEEecC
Q 000849 14 CDGHVQVLVSTANLAWGVNLPAHTVIIKGT----QVYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 85 (1254)
Q Consensus 14 ~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~----~~~~~~~~~----~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~~ 85 (1254)
-.|.=+|++||+.-+-++-+|..++||-+- .+||+..|- ..++|-.+..|++|||||-+ .|.+|=+.+.
T Consensus 310 ~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse 386 (845)
T COG1643 310 PGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSE 386 (845)
T ss_pred CCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCH
Confidence 344445999999999999999999999543 579988873 35689999999999999953 3777666554
Q ss_pred CcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcCchhHHHHHHH
Q 000849 86 SELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITD 165 (1254)
Q Consensus 86 ~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~~~~~~~~~~ 165 (1254)
+.|..+...+.| .=+...|...++..-+.|.-.+. . .|-|. -.|. ..
T Consensus 387 ---~~~~~~~~~t~P--EIlrtdLs~~vL~l~~~G~~~d~------~--~f~fl---d~P~-----------------~~ 433 (845)
T COG1643 387 ---EDFLAFPEFTLP--EILRTDLSGLVLQLKSLGIGQDI------A--PFPFL---DPPP-----------------EA 433 (845)
T ss_pred ---HHHHhcccCCCh--hhhhcchHHHHHHHHhcCCCCCc------c--cCccC---CCCC-----------------hH
Confidence 234455444433 11233444455555555542010 1 11111 1111 23
Q ss_pred HHHHHHHHhhhcCccccc
Q 000849 166 LIHTAANVLDRNNLVKYG 183 (1254)
Q Consensus 166 ~~~~~~~~L~~~~~i~~~ 183 (1254)
-+..|+..|...|-+..+
T Consensus 434 ~i~~A~~~L~~LGAld~~ 451 (845)
T COG1643 434 AIQAALTLLQELGALDDS 451 (845)
T ss_pred HHHHHHHHHHHcCCcCCC
Confidence 477899999999998654
No 386
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.87 E-value=0.37 Score=62.26 Aligned_cols=89 Identities=21% Similarity=0.145 Sum_probs=61.2
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh-cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA-SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMC 531 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~-~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~ 531 (1254)
+.+.|++++..... .++|.|..|||||.+...-+...+... -+.. ++++++-|+..|.++.+++.+.++..
T Consensus 5 Ln~~Q~~av~~~~g--~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~--~IL~lTFT~kAA~em~~Rl~~~~~~~---- 76 (726)
T TIGR01073 5 LNPEQREAVKTTEG--PLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPW--NILAITFTNKAAREMKERVEKLLGPV---- 76 (726)
T ss_pred cCHHHHHHHhCCCC--CEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHH--HeeeeeccHHHHHHHHHHHHHHhccc----
Confidence 55666666665433 355559999999998877776666541 1223 79999999999999988887744310
Q ss_pred EEEeccccccchhhcccCcEEEEcHhhH-HHHHHh
Q 000849 532 VVELTVETAMDLKLLEKGQIIISTPEKW-DALSRR 565 (1254)
Q Consensus 532 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 565 (1254)
..++.|+|-..| ..+++.
T Consensus 77 ----------------~~~~~i~TFHs~~~~iLr~ 95 (726)
T TIGR01073 77 ----------------AEDIWISTFHSMCVRILRR 95 (726)
T ss_pred ----------------cCCcEEEcHHHHHHHHHHH
Confidence 135778888877 445554
No 387
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.84 E-value=0.56 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=15.9
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
+..+++.||+|+|||..+...
T Consensus 38 ~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 445666699999999887543
No 388
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=92.84 E-value=0.12 Score=58.03 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEE
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 81 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i 81 (1254)
-|.+|+.--+.|+++.++.|+||...|+|+++-..-.+|.-| .|-.-..|.+++||.||.. ..|.+|-
T Consensus 543 kP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invt----------lpd~k~nyvhrigrvgrae--rmglais 610 (725)
T KOG0349|consen 543 KPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVT----------LPDDKTNYVHRIGRVGRAE--RMGLAIS 610 (725)
T ss_pred ChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEe----------cCcccchhhhhhhccchhh--hcceeEE
Confidence 367888888899999999999999999999988777777422 3334568999999999974 3577775
Q ss_pred Ee-cCCcHH
Q 000849 82 IT-GHSELQ 89 (1254)
Q Consensus 82 ~~-~~~~~~ 89 (1254)
+. +..++-
T Consensus 611 lvat~~ekv 619 (725)
T KOG0349|consen 611 LVATVPEKV 619 (725)
T ss_pred Eeeccchhe
Confidence 54 334433
No 389
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=92.81 E-value=0.14 Score=56.36 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=75.6
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v 532 (1254)
.-+.-.+++.-...+-..++.||||||||+-..-..+....+.-+ ....-+=.|.+-||.-+...+.. .+.
T Consensus 259 RFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVn--TLwgSFEi~n~rla~~mL~Qyag-------yrl 329 (514)
T KOG2373|consen 259 RFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVN--TLWGSFEIPNKRLAHWMLVQYAG-------YRL 329 (514)
T ss_pred hhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhhhhh--heeeeeecchHHHHHHHHHHHcc-------Cch
Confidence 344556677777777788999999999997655555665555211 11333445777776654443321 110
Q ss_pred EEeccccccchhhcccCcEEEEcHh---hHHHHHHhhhcccccceeeEEEecccccccC------CCccHHHHHHHHHHH
Q 000849 533 VELTVETAMDLKLLEKGQIIISTPE---KWDALSRRWKQRKYVQQVSLFIIDELHLIGG------QGGPVLEVIVARMRY 603 (1254)
Q Consensus 533 ~~~~g~~~~~~~~~~~~~Iiv~Tpe---~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~------~~g~~~e~~~~~l~~ 603 (1254)
.--....+-.....+.-...++|-. -+...+..........++..||||..+.+.. ++-..-+.++..++.
T Consensus 330 ~drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~ 409 (514)
T KOG2373|consen 330 LDRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQ 409 (514)
T ss_pred HhhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhHHHHHHHHHH
Confidence 0000001111122223334444421 1122222223344567788999999987654 233344456666665
Q ss_pred HHhh
Q 000849 604 IASQ 607 (1254)
Q Consensus 604 ~~~~ 607 (1254)
...+
T Consensus 410 fAT~ 413 (514)
T KOG2373|consen 410 FATQ 413 (514)
T ss_pred Hhhc
Confidence 5443
No 390
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.79 E-value=0.14 Score=55.88 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=29.5
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCC
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSL 621 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl 621 (1254)
..+.++.+|+||||.|..+. .+.+++.........++++..--+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-------q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-------QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-------HHHHHHHHhccccceEEEEEcCCh
Confidence 45677999999999887422 233444444456788888876654
No 391
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.77 E-value=0.49 Score=56.37 Aligned_cols=77 Identities=16% Similarity=0.058 Sum_probs=56.0
Q ss_pred hhcccCCChHHHHHHhhCC----------cceeeeeeccCCCchHHHHH-HHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 447 RKLMFARLPAKQRITAALP----------NIILVLQLAPTGSGKTICAE-FAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 447 ~~~~f~~~~~Q~~~~~~i~----------~~~~viv~apTGsGKT~~~~-l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
...||++.|+|+=++.+|- +..-.++..|-|-|||..+. +.....+.....+. .+.+++|+.+-+.+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~--~~~i~A~s~~qa~~ 133 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGA--GIYILAPSVEQAAN 133 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCC--cEEEEeccHHHHHH
Confidence 4569999999999999992 44457888999999997765 33333333323333 89999999998888
Q ss_pred HHHHHHHhhc
Q 000849 516 RYCDWERKFG 525 (1254)
Q Consensus 516 ~~~~~~~~~~ 525 (1254)
.+...+....
T Consensus 134 ~F~~ar~mv~ 143 (546)
T COG4626 134 SFNPARDMVK 143 (546)
T ss_pred hhHHHHHHHH
Confidence 8877765443
No 392
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=92.75 E-value=0.35 Score=61.40 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccce--------------------------------------EEEEecC
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAH--------------------------------------TVIIKGT 43 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~--------------------------------------~vii~~~ 43 (1254)
...+|.+|-++|+.| .|+|||+..++|.++--- ..|| ||
T Consensus 479 ~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI-gT 555 (896)
T PRK13104 479 HEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRII-GS 555 (896)
T ss_pred ChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEE-ee
Confidence 467999999999999 599999999999887532 2233 34
Q ss_pred ccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEEec--CCcH--------HHHHHhhc--CCCCchhhHHHHHHH
Q 000849 44 QVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG--HSEL--------QYYLSLMN--QQLPIESQFVSKLAE 111 (1254)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~--~~~~--------~~~~~~~~--~~~~i~s~l~~~l~~ 111 (1254)
.+.+ |..-=.|..|||||-|-- |.+-.+.+ ++-. ..+.+.++ ...||++.+.....+
T Consensus 556 erhe---------srRID~QLrGRaGRQGDP--Gss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~ 624 (896)
T PRK13104 556 ERHE---------SRRIDNQLRGRAGRQGDP--GSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHSLVTRAIE 624 (896)
T ss_pred ccCc---------hHHHHHHhccccccCCCC--CceEEEEEcCcHHHHHhChHHHHHHHHHcCCCCCCcCcchHHHHHHH
Confidence 3332 333447999999997665 55555543 2222 22333333 345888888765554
Q ss_pred HHHH
Q 000849 112 LLNA 115 (1254)
Q Consensus 112 ~l~~ 115 (1254)
....
T Consensus 625 ~aQ~ 628 (896)
T PRK13104 625 NAQR 628 (896)
T ss_pred HHHH
Confidence 4433
No 393
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.55 E-value=0.66 Score=52.36 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.3
Q ss_pred ceeeeeeccCCCchHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEF 486 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l 486 (1254)
...+++.||+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 34688889999999998844
No 394
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.52 E-value=1.6 Score=47.69 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=28.3
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
++.+..+++.||+|+|||..+...+.+.+.. +. +++|+.-
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~--~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GD--PVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc---CC--eEEEEEc
Confidence 4566778888999999998876655544433 44 6777764
No 395
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=92.47 E-value=0.28 Score=51.72 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=51.6
Q ss_pred CccccCCCCCHHHHHHHHcCCCCCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhc
Q 000849 1072 SMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCN 1129 (1254)
Q Consensus 1072 ~~L~Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~ 1129 (1254)
.+|.+|||||+.++++|.++| +.|+.++..++.+++..+-++++.....|.+.++
T Consensus 3 ~~L~~IpGIG~krakkLl~~G---F~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDISGVGPSKAEALREAG---FESVEDVRAADQSELAEVDGIGNALAARIKADVG 57 (232)
T ss_pred cccccCCCcCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhc
Confidence 468899999999999999999 9999999999999999988899999999999987
No 396
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.46 E-value=0.87 Score=49.88 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=35.7
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
++.+..+++.||+|+|||..+...+...+.+ +. +++|+.=-.. ..++.+++.+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~--~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQ---GK--KVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhC---CC--EEEEEEcCCC-HHHHHHHHHH
Confidence 4567788888999999999887766655543 44 7888765433 2444554443
No 397
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.43 E-value=0.96 Score=48.53 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=30.5
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcch
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPI 509 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~ 509 (1254)
++.+..+.+.||+|+|||..++..+...... +. +++|+.-.
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~--~v~yi~~e 49 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQ---GK--KVVYIDTE 49 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEECC
Confidence 4567788999999999999887666554433 44 78888764
No 398
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.35 E-value=0.4 Score=58.51 Aligned_cols=40 Identities=13% Similarity=0.444 Sum_probs=24.8
Q ss_pred cceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 572 VQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 572 l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
-.+.+++||||+|++.. .....++ +..+..+....+|+.+
T Consensus 117 ~~~~kV~iIDE~~~ls~---~a~naLL----k~LEepp~~~~fIlat 156 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSG---HSFNALL----KTLEEPPSHVKFILAT 156 (509)
T ss_pred cCCcEEEEEEChHhcCH---HHHHHHH----HHHhccCCCeEEEEEE
Confidence 35789999999999873 2223233 3333435567777655
No 399
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.31 E-value=1.3 Score=53.30 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=24.2
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
+++.||+|+|||..+. ++.+.+....++. +++|+..
T Consensus 133 l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~--~v~yi~~ 168 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQ-SIGNYVVQNEPDL--RVMYITS 168 (440)
T ss_pred EEEEcCCCCcHHHHHH-HHHHHHHHhCCCC--eEEEEEH
Confidence 5666999999998764 4455554423344 7888764
No 400
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.31 E-value=0.19 Score=53.19 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=15.2
Q ss_pred eeeeeeccCCCchHHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEF 486 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l 486 (1254)
.++++.||+|+|||+.+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4688889999999987744
No 401
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.31 E-value=0.37 Score=57.73 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=33.6
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEE--cchHHHHHHHHHHHHHhh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYI--APIEALAKQRYCDWERKF 524 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i--~P~r~La~q~~~~~~~~~ 524 (1254)
.+.++.++||||+|||+......-..... .... ++.++ -+.|.-+.+..+.|.+.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~-~G~~--kV~LI~~Dt~RigA~EQLr~~Aeil 312 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMR-HGAS--KVALLTTDSYRIGGHEQLRIYGKIL 312 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHh-cCCC--eEEEEeCCccchhHHHHHHHHHHHh
Confidence 45688899999999998775444333222 1112 34333 345666667677776644
No 402
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.27 E-value=0.47 Score=58.26 Aligned_cols=43 Identities=14% Similarity=0.375 Sum_probs=26.5
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCC
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSAT 620 (1254)
...+.+++||||+|+|... ... .+.+.++..+.++.+|+.|.-
T Consensus 121 ~~gr~KViIIDEah~Ls~~---AaN----ALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 121 TAGRFKVYMIDEVHMLTNH---AFN----AMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred hcCCceEEEEEChHhcCHH---HHH----HHHHhhccCCCCceEEEEeCC
Confidence 3457899999999999731 222 222333333556777777653
No 403
>PLN03025 replication factor C subunit; Provisional
Probab=92.24 E-value=0.51 Score=54.36 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.2
Q ss_pred eeeeeeccCCCchHHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEF 486 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l 486 (1254)
..+++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3577789999999987744
No 404
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=92.17 E-value=0.17 Score=52.10 Aligned_cols=90 Identities=23% Similarity=0.360 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCCcEEEech--hhhhhcCcc---ceEEEEecCccccCCC---------------Ccc----ccCCHHH
Q 000849 5 DRQLVEDLFCDGHVQVLVSTA--NLAWGVNLP---AHTVIIKGTQVYNPEK---------------GAW----TELSPLD 60 (1254)
Q Consensus 5 ~R~~ve~~f~~g~i~vl~~T~--tl~~Gvnlp---~~~vii~~~~~~~~~~---------------~~~----~~~~~~~ 60 (1254)
++..+-+.|+++.=.||+|+. .+..|||+| ++.|||-|.-+-.+.. ..+ .+.....
T Consensus 47 ~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (167)
T PF13307_consen 47 SRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRK 126 (167)
T ss_dssp HHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHH
T ss_pred hHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHH
Confidence 455556778888889999999 999999999 7889999886643321 001 2234467
Q ss_pred HHHHhcccCCCCCCCcceEEEEecCCcHHHHHHhh
Q 000849 61 IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLM 95 (1254)
Q Consensus 61 ~~qm~GRAGR~~~~~~g~~~i~~~~~~~~~~~~~~ 95 (1254)
+.|.+||+=|...| .|..+++-..-....|.+.+
T Consensus 127 l~Qa~GR~iR~~~D-~g~i~llD~R~~~~~y~~~l 160 (167)
T PF13307_consen 127 LKQAIGRLIRSEDD-YGVIILLDSRFLSKRYGKYL 160 (167)
T ss_dssp HHHHHHCC--STT--EEEEEEESGGGGGHHHHHH-
T ss_pred HhhhcCcceeccCC-cEEEEEEcCccccchhhhcC
Confidence 88999999996554 77776665442233455443
No 405
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.16 E-value=1.1 Score=48.82 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=69.4
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhh---cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRA---SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA 540 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~---~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~ 540 (1254)
+.....+.+.||+|+|||..+...+....... .... +++|+..-...-.+...++.+.++ ...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~--~v~yi~~e~~~~~~rl~~~~~~~~----~~~-------- 81 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEG--KVVYIDTEGAFRPERLVQLAVRFG----LDP-------- 81 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcc--eEEEEecCCCCCHHHHHHHHHHhc----cch--------
Confidence 45667888899999999998876555443330 0113 788887654332222222222111 110
Q ss_pred cchhhcccCcEEE---EcHhhHHHHHHhhhcccccceeeEEEecccccccC-C-Cc--------cHHHHHHHHHHHHHhh
Q 000849 541 MDLKLLEKGQIII---STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q-GG--------PVLEVIVARMRYIASQ 607 (1254)
Q Consensus 541 ~~~~~~~~~~Iiv---~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~-~g--------~~~e~~~~~l~~~~~~ 607 (1254)
...+ .++.+ .+++.+...++.......-.++++||||-+-.+.. + .+ ..+..++..++.+...
T Consensus 82 --~~~~--~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~ 157 (226)
T cd01393 82 --EEVL--DNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADK 157 (226)
T ss_pred --hhhh--ccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 0001 12333 34555544444432211234789999999875532 1 11 1233344445555433
Q ss_pred cCCCcEEEEecCC
Q 000849 608 VENKIRIVALSTS 620 (1254)
Q Consensus 608 ~~~~~rii~lSAT 620 (1254)
.++.+|+++-+
T Consensus 158 --~~~~vi~tnq~ 168 (226)
T cd01393 158 --FNVAVVFTNQV 168 (226)
T ss_pred --hCcEEEEEEEE
Confidence 45666666533
No 406
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.15 E-value=0.5 Score=52.24 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=33.5
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHH
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE 521 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~ 521 (1254)
+.++..+++.||+|+|||..+.-...+ +.+ .| .-++.+++.+|+.++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~-l~~---~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNE-LLK---AG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHH-HHH---cC--CeEEEEEHHHHHHHHHHHHh
Confidence 345566777799999999887544443 334 33 44556777778777555443
No 407
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.03 E-value=0.35 Score=54.06 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=44.9
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
.++.|+.-+++|..+..+.++||-|+|||..+.-.....+.. +.-. ++|..=|
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~-~~v~--rIiLtRP 181 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA-GQVR--RIILTRP 181 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh-cccc--eeeecCc
Confidence 588999999999999999999999999999888777777776 3344 7777777
No 408
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.99 E-value=1.1 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=17.1
Q ss_pred ceeeeeeccCCCchHHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~i 488 (1254)
++.+++.||.|+|||+++....
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457888999999999885543
No 409
>PRK06904 replicative DNA helicase; Validated
Probab=91.99 E-value=1 Score=54.59 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=75.9
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-cc-ccccc
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TV-ETAMD 542 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g-~~~~~ 542 (1254)
.....+++-|.||.|||..++-.+...... .+. .++|.+. ..-..|+..++-..... +....+ .| ....+
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~--~Vl~fSl-EMs~~ql~~Rlla~~s~---v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEK--PVLVFSL-EMPAEQIMMRMLASLSR---VDQTKIRTGQNLDQQ 290 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCC--eEEEEec-cCCHHHHHHHHHHhhCC---CCHHHhccCCCCCHH
Confidence 344455666999999998664333333222 233 5666543 34456666665543332 221111 22 11111
Q ss_pred --------hhhc-ccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccC-----CCccHHHHHHHHHHH
Q 000849 543 --------LKLL-EKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-----QGGPVLEVIVARMRY 603 (1254)
Q Consensus 543 --------~~~~-~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-----~~g~~~e~~~~~l~~ 603 (1254)
...+ ...++.|- |+..+....++.... ...+++||||=.|++.. .|...+..+...++.
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~ 368 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRE--NGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKA 368 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 1122 23446652 444454434433211 23589999999998863 233345666677777
Q ss_pred HHhhcCCCcEEEEecC
Q 000849 604 IASQVENKIRIVALST 619 (1254)
Q Consensus 604 ~~~~~~~~~rii~lSA 619 (1254)
+.+. -++.+|++|-
T Consensus 369 lAke--l~ipVi~lsQ 382 (472)
T PRK06904 369 LAKE--LKVPVVALSQ 382 (472)
T ss_pred HHHH--hCCeEEEEEe
Confidence 7654 4788888884
No 410
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.96 E-value=0.87 Score=47.95 Aligned_cols=55 Identities=5% Similarity=0.096 Sum_probs=30.7
Q ss_pred hhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 557 EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 557 e~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
+.+..+..............++||||+|.+..+ ..+.++. ..+..+....+|+++
T Consensus 79 ~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~---~~~~Ll~----~le~~~~~~~~il~~ 133 (188)
T TIGR00678 79 DQVRELVEFLSRTPQESGRRVVIIEDAERMNEA---AANALLK----TLEEPPPNTLFILIT 133 (188)
T ss_pred HHHHHHHHHHccCcccCCeEEEEEechhhhCHH---HHHHHHH----HhcCCCCCeEEEEEE
Confidence 444444444444445677899999999988732 2233333 333334455566554
No 411
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.95 E-value=1.9 Score=53.17 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=54.5
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEeccccccchhhcccC
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKG 549 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 549 (1254)
+++.|++|+|||.... ++.+.+....++. +++|+.. ..++.+....+.. +
T Consensus 317 L~LyG~sGsGKTHLL~-AIa~~a~~~~~g~--~V~Yita-eef~~el~~al~~------~-------------------- 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLH-AIGHYARRLYPGT--RVRYVSS-EEFTNEFINSIRD------G-------------------- 366 (617)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHhCCCC--eEEEeeH-HHHHHHHHHHHHh------c--------------------
Confidence 5666999999997653 4444444312333 7777654 4454443333221 0
Q ss_pred cEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCC
Q 000849 550 QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 550 ~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSAT 620 (1254)
..+.+ .+ .+.++++|||||+|.+...... -+.++..+..+. ..+.++|+.|-.
T Consensus 367 -----~~~~f---~~------~y~~~DLLlIDDIq~l~gke~t-qeeLF~l~N~l~---e~gk~IIITSd~ 419 (617)
T PRK14086 367 -----KGDSF---RR------RYREMDILLVDDIQFLEDKEST-QEEFFHTFNTLH---NANKQIVLSSDR 419 (617)
T ss_pred -----cHHHH---HH------HhhcCCEEEEehhccccCCHHH-HHHHHHHHHHHH---hcCCCEEEecCC
Confidence 00111 11 1456799999999998753221 233444444443 234566655443
No 412
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.94 E-value=0.84 Score=55.44 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=17.5
Q ss_pred ceeeeeeccCCCchHHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~i 488 (1254)
++.+++.||.|+|||.++...+
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568888999999999885543
No 413
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=91.92 E-value=0.21 Score=45.60 Aligned_cols=58 Identities=10% Similarity=-0.020 Sum_probs=44.2
Q ss_pred HHHHhHHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHHHHHHHhCcc
Q 000849 906 TISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASAS 967 (1254)
Q Consensus 906 ~l~~L~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~ 967 (1254)
|++.|...|+|+. ++ ..|++|+.|+.++++|.-++++..+........+++.+++..+
T Consensus 2 A~~~L~~LgAld~--~~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls 59 (92)
T smart00847 2 ALELLYELGALDD--DG--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLS 59 (92)
T ss_pred HHHHHHHCCCcCC--CC--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhc
Confidence 6788999999953 22 7899999999999999999999976542123566666665443
No 414
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=91.92 E-value=0.61 Score=59.13 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhCCCCcEEEechhhhhhcCccce--------------------------------------EEEEecCcc
Q 000849 4 GDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAH--------------------------------------TVIIKGTQV 45 (1254)
Q Consensus 4 ~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~--------------------------------------~vii~~~~~ 45 (1254)
.+|+..=..|+.|...|+|||+-.++|.+++-. ..|| ||.+
T Consensus 465 ~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi-gTer 543 (830)
T PRK12904 465 HEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI-GTER 543 (830)
T ss_pred HHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE-eccc
Confidence 467777778999999999999999999998875 1233 3333
Q ss_pred ccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEEec--CCcH--------HHHHHhh--cCCCCchhhHHHHHHHHH
Q 000849 46 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG--HSEL--------QYYLSLM--NQQLPIESQFVSKLAELL 113 (1254)
Q Consensus 46 ~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~--~~~~--------~~~~~~~--~~~~~i~s~l~~~l~~~l 113 (1254)
. -|..-=.|..|||||-|-. |.+-.+.+ ++-. ..+.+.+ .+..||++.......+..
T Consensus 544 h---------esrRid~QlrGRagRQGdp--Gss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~a 612 (830)
T PRK12904 544 H---------ESRRIDNQLRGRSGRQGDP--GSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENA 612 (830)
T ss_pred C---------chHHHHHHhhcccccCCCC--CceeEEEEcCcHHHHhhchHHHHHHHHHcCCCCCCccccHHHHHHHHHH
Confidence 2 3444568999999997766 65555544 2222 1222223 234588888776555544
Q ss_pred HH
Q 000849 114 NA 115 (1254)
Q Consensus 114 ~~ 115 (1254)
..
T Consensus 613 Q~ 614 (830)
T PRK12904 613 QK 614 (830)
T ss_pred HH
Confidence 33
No 415
>PRK05748 replicative DNA helicase; Provisional
Probab=91.91 E-value=0.85 Score=55.25 Aligned_cols=144 Identities=22% Similarity=0.173 Sum_probs=76.8
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEE-Eeccccccc-
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVV-ELTVETAMD- 542 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~-~~~g~~~~~- 542 (1254)
..+..+++-|+||.|||..++-.+.+.... .+. .++|+. ...-..|+..++-...+. +... ...|.....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~--~v~~fS-lEms~~~l~~R~l~~~~~---v~~~~i~~~~l~~~e 272 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATK--TDK--NVAIFS-LEMGAESLVMRMLCAEGN---IDAQRLRTGQLTDDD 272 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCC--eEEEEe-CCCCHHHHHHHHHHHhcC---CCHHHhhcCCCCHHH
Confidence 344456666999999998776555443322 233 566654 333445666665433332 1111 112222211
Q ss_pred -------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccCC------CccHHHHHHHHHHHH
Q 000849 543 -------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ------GGPVLEVIVARMRYI 604 (1254)
Q Consensus 543 -------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~------~g~~~e~~~~~l~~~ 604 (1254)
...+.+..+.|. |++.+....++.... ..++++||||=.|.+... +...+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~--~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~l 350 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQE--HGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKAL 350 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 112234456553 344444444443222 126899999999998631 223355566777776
Q ss_pred HhhcCCCcEEEEecCC
Q 000849 605 ASQVENKIRIVALSTS 620 (1254)
Q Consensus 605 ~~~~~~~~rii~lSAT 620 (1254)
.+. -++.+|++|-.
T Consensus 351 Ake--~~i~vi~lsQl 364 (448)
T PRK05748 351 AKE--LKVPVIALSQL 364 (448)
T ss_pred HHH--hCCeEEEeccc
Confidence 654 46888888875
No 416
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.89 E-value=0.64 Score=55.84 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=22.9
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
+++.||+|+|||..+. ++...+.. .+. +++|+..
T Consensus 144 l~L~G~~G~GKTHLl~-Ai~~~l~~--~~~--~v~yi~~ 177 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQ-AAVHALRE--SGG--KILYVRS 177 (445)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHHH--cCC--CEEEeeH
Confidence 5566999999998764 44554443 233 7888764
No 417
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=91.86 E-value=0.51 Score=59.86 Aligned_cols=259 Identities=14% Similarity=0.161 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHhCCCCcEEEechhhhhhcCccce-------------------------------------EEEEecCc
Q 000849 2 KRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAH-------------------------------------TVIIKGTQ 44 (1254)
Q Consensus 2 ~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~-------------------------------------~vii~~~~ 44 (1254)
...+|.+|-++|+.|. |+|||+..++|.++--. ..|| ||.
T Consensus 484 ~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI-gTe 560 (908)
T PRK13107 484 HEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL-GTE 560 (908)
T ss_pred cHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE-ecc
Confidence 4678999999999998 99999999999887632 2333 444
Q ss_pred cccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEEec--CCcH--------HHHHHhh--cCCCCchhhHHHHHHHH
Q 000849 45 VYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG--HSEL--------QYYLSLM--NQQLPIESQFVSKLAEL 112 (1254)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~--~~~~--------~~~~~~~--~~~~~i~s~l~~~l~~~ 112 (1254)
+.+ |..==.|..|||||-|-- |.+-.+.+ ++-+ ..+.+.+ .+..||++.+.....+.
T Consensus 561 rhe---------SrRID~QLrGRaGRQGDP--Gss~f~lSlED~L~r~f~~~~~~~~~~~~~~~e~~~i~~~~~~~~i~~ 629 (908)
T PRK13107 561 RHE---------SRRIDNQLRGRAGRQGDA--GSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIEN 629 (908)
T ss_pred cCc---------hHHHHhhhhcccccCCCC--CceeEEEEeCcHHHHHhChHHHHHHHHHcCCCCCCccccHHHHHHHHH
Confidence 433 233347999999997765 55555543 2211 1222222 33458888877765555
Q ss_pred HHHHHHhcccc------ChHHHHHHHhhcceeEeeccCCcccCCCCCcCchhHHHHHHHHHHHHHHHhhhcCcccccCcc
Q 000849 113 LNAEIVLGTVQ------NAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKS 186 (1254)
Q Consensus 113 l~~~i~~~~~~------~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~ 186 (1254)
...-+-..... ..+++++.=+...+..|- -- +. .+.+.....+++...+..+.+..+.. +...
T Consensus 630 aQ~~vE~~~~~~Rk~ll~yD~V~n~QR~vIY~~R~---~i---L~----~~~~~~~i~~~~~~~i~~~v~~~~~~-~~~~ 698 (908)
T PRK13107 630 AQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRN---EL---MD----AESIEDTIKNIQDDVINGVIDQYIPP-QSVE 698 (908)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---Hc----CCCHHHHHHHHHHHHHHHHHHHhcCC-Ccch
Confidence 44333222222 234444444444443331 00 00 11133333444444444443322110 0000
Q ss_pred CceeecccHHHHH-HHhccCC--ccCCCC---CC--ChhHHHHHHHHHHHccccccCccccccCcHHHHHHHHHHHHHhc
Q 000849 187 GYFQSEKIKMELA-KLLDRVP--IPVKES---LE--EPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKR 258 (1254)
Q Consensus 187 ~~~~~t~e~~~l~-~l~~~~~--~~~~~~---~~--~~~~Kv~~Llq~~is~~~~~~~~l~~D~~a~ri~~a~~ei~~~~ 258 (1254)
.. -+...|. .+...+. +++... .. ....=...|.+..........-.+..+ ....+.|.++=-+.-.
T Consensus 699 ~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~k~~~~~~~-~~~~~er~i~L~~iD~ 773 (908)
T PRK13107 699 EL----WDVPGLEQRLHQEFMLKLPIQEWLDKEDDLHEETLRERIVTSWSDAYKAKEEMVGAQ-VLRQFEKAVMLQTLDG 773 (908)
T ss_pred hh----ccHHHHHHHHHHHcCCCCCHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHH
Confidence 00 0011121 1111221 111110 11 111111122222222111110011111 2333444444445668
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCCCcccccCC
Q 000849 259 GWSQLAEKALKLSKMVTKRMWSVQTPLRQFNG 290 (1254)
Q Consensus 259 ~~~~~a~~~l~l~~~i~~~~w~~~~~L~q~~~ 290 (1254)
.|......+-.|...|.-+...-.-||..+..
T Consensus 774 ~W~eHL~~md~Lr~~I~lr~y~QkdPl~eYk~ 805 (908)
T PRK13107 774 LWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKR 805 (908)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCHHHHHHH
Confidence 99999999999999999888887788876653
No 418
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.83 E-value=1.2 Score=51.12 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=26.5
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQR 516 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~ 516 (1254)
..+++.||||+|||..+. ++...+.. .+. .|+|+. ...|..+.
T Consensus 184 ~~Lll~G~~GtGKThLa~-aIa~~l~~--~g~--~V~y~t-~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSN-CIAKELLD--RGK--SVIYRT-ADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHH-HHHHHHHH--CCC--eEEEEE-HHHHHHHH
Confidence 456777999999998664 45555544 233 666654 44554443
No 419
>PRK05642 DNA replication initiation factor; Validated
Probab=91.82 E-value=0.89 Score=49.72 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=21.1
Q ss_pred eeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 470 VLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 470 viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
+++.||+|+|||..+ .++...+.. .+. +++|+..
T Consensus 48 l~l~G~~G~GKTHLl-~a~~~~~~~--~~~--~v~y~~~ 81 (234)
T PRK05642 48 IYLWGKDGVGRSHLL-QAACLRFEQ--RGE--PAVYLPL 81 (234)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHh--CCC--cEEEeeH
Confidence 455599999999874 344444433 233 6777653
No 420
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.81 E-value=0.32 Score=56.90 Aligned_cols=74 Identities=24% Similarity=0.354 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEEe
Q 000849 4 GDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 83 (1254)
Q Consensus 4 ~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~ 83 (1254)
-+|..|=+..|.|..+|||--+-|-.|+++|-...|- ..|..+.+| -=|-....|-+|||.|. ..|++|+.+
T Consensus 483 lER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA----IlDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYA 554 (663)
T COG0556 483 LERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYA 554 (663)
T ss_pred HHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE----EeecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEc
Confidence 4788888999999999999999999999999977665 456555444 23677899999999994 459999998
Q ss_pred cC
Q 000849 84 GH 85 (1254)
Q Consensus 84 ~~ 85 (1254)
+.
T Consensus 555 D~ 556 (663)
T COG0556 555 DK 556 (663)
T ss_pred hh
Confidence 64
No 421
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.80 E-value=1.4 Score=53.73 Aligned_cols=60 Identities=15% Similarity=-0.001 Sum_probs=43.3
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhcc
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGK 526 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~ 526 (1254)
....+++.-|=|.|||......++..+.-.. ..+..++++++++.-|..+++.+++.+..
T Consensus 21 rf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 21 RFREVYLEVPRKNGKSTLAAAIALYMLFLDG-EPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred EEEEEEEEEcCccCccHHHHHHHHHHHhcCC-ccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3445777789999999877655554443311 22348999999999999999988876654
No 422
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.78 E-value=0.4 Score=54.45 Aligned_cols=48 Identities=31% Similarity=0.369 Sum_probs=34.9
Q ss_pred hCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 463 ALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 463 ~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
-++....+.+.||+|||||..++..+...... ++ +++|+..-.++-.+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~--~v~yId~E~~~~~~ 98 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKA---GG--TAAFIDAEHALDPV 98 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CC--cEEEEcccchhHHH
Confidence 35667788888999999999887766655443 55 78888766555443
No 423
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.76 E-value=0.7 Score=52.70 Aligned_cols=39 Identities=13% Similarity=0.355 Sum_probs=24.7
Q ss_pred eeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCh
Q 000849 575 VSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANA 624 (1254)
Q Consensus 575 v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~~ 624 (1254)
=.+++|||+|+++... =+.++..+ .+-.+++..||-.|+
T Consensus 105 ~tiLflDEIHRfnK~Q---QD~lLp~v--------E~G~iilIGATTENP 143 (436)
T COG2256 105 RTILFLDEIHRFNKAQ---QDALLPHV--------ENGTIILIGATTENP 143 (436)
T ss_pred ceEEEEehhhhcChhh---hhhhhhhh--------cCCeEEEEeccCCCC
Confidence 3589999999998422 12233332 256678888886554
No 424
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.63 E-value=1.1 Score=53.33 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=21.5
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA 507 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~ 507 (1254)
.+++.||+|+|||.+.-. +++.+.... ....++++-
T Consensus 57 ~~lI~G~~GtGKT~l~~~-v~~~l~~~~--~~~~~v~in 92 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKK-VFEELEEIA--VKVVYVYIN 92 (394)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHHhc--CCcEEEEEE
Confidence 456669999999987643 344443311 123566663
No 425
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.61 E-value=0.89 Score=54.96 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=16.2
Q ss_pred eeeeeeccCCCchHHHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~ 487 (1254)
+.+++.||+|+|||+++...
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788899999999988554
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.60 E-value=2.3 Score=50.37 Aligned_cols=133 Identities=16% Similarity=0.136 Sum_probs=69.5
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccch
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 543 (1254)
.+.+++++|++|+|||+.+.-.+. .+.. .+. +++++. |.|.-|.++.+.+.+.. ++.+.......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~-~l~~--~G~--kV~lV~~D~~R~aA~eQLk~~a~~~----~vp~~~~~~~~d--- 166 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY-YYQR--KGF--KPCLVCADTFRAGAFDQLKQNATKA----RIPFYGSYTESD--- 166 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH--CCC--CEEEEcCcccchhHHHHHHHHhhcc----CCeEEeecCCCC---
Confidence 356889999999999876643332 2322 233 555543 56766666666655432 344332221111
Q ss_pred hhcccCcEEEEcHhhH-HHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 544 KLLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 544 ~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
|..+ ...+.... -..+++||||=+-+.. .-+.++..+..+.+...+...++.++||..
T Consensus 167 ------------p~~i~~~~l~~~~----~~~~DvViIDTaGr~~-----~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 167 ------------PVKIASEGVEKFK----KENFDIIIVDTSGRHK-----QEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred ------------HHHHHHHHHHHHH----hCCCCEEEEECCCCCc-----chHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 1111 00111111 1357888888886443 222344555555544456667888888876
Q ss_pred -ChHHHHHhh
Q 000849 623 -NAKDLGEWI 631 (1254)
Q Consensus 623 -~~~~l~~~l 631 (1254)
+..+.++-+
T Consensus 226 q~a~~~a~~F 235 (429)
T TIGR01425 226 QAAEAQAKAF 235 (429)
T ss_pred hhHHHHHHHH
Confidence 333344333
No 427
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.57 E-value=2.3 Score=48.66 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=33.2
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhh
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKF 524 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~ 524 (1254)
.+.+++++||+|+|||+.+.-.+.. +.. .++ +|+++. +.|+.+.++...|....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~-l~~--~g~--~V~Li~~D~~r~~a~eql~~~a~~~ 168 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK-YKA--QGK--KVLLAAGDTFRAAAIEQLQVWGERV 168 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-HHh--cCC--eEEEEecCccchhhHHHHHHHHHHc
Confidence 4568888999999999876433322 222 244 565553 44666666666666533
No 428
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.49 E-value=0.21 Score=56.86 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=43.2
Q ss_pred CCCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCC
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
...+++.|.+.+..+...+.|++++ |+||||||+.. -+++..+....+.
T Consensus 126 ~g~~~~~~~~~L~~~v~~~~nilI~------------------------------G~tGSGKTTll-~aL~~~i~~~~~~ 174 (323)
T PRK13833 126 SKIMTEAQASVIRSAIDSRLNIVIS------------------------------GGTGSGKTTLA-NAVIAEIVASAPE 174 (323)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEE------------------------------CCCCCCHHHHH-HHHHHHHhcCCCC
Confidence 4457788888888877777788777 99999999865 4455555431233
Q ss_pred CCcEEEEEcchHHH
Q 000849 499 GVMRAVYIAPIEAL 512 (1254)
Q Consensus 499 ~~~~vl~i~P~r~L 512 (1254)
. +++.+-...+|
T Consensus 175 ~--rivtiEd~~El 186 (323)
T PRK13833 175 D--RLVILEDTAEI 186 (323)
T ss_pred c--eEEEecCCccc
Confidence 3 78888877776
No 429
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.42 E-value=0.36 Score=54.88 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
++...++.+.||+|||||..++..+...... ++ +++|+.+-.++-.+
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~--~~vyId~E~~~~~~ 98 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKL---GG--TVAFIDAEHALDPV 98 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CC--CEEEECccccHHHH
Confidence 4567788888999999999887776655443 55 89999887666543
No 430
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.38 E-value=2.9 Score=46.52 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=63.3
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chH-HHHHHHHHHHHHhhccccCcEEEEeccccccch
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIE-ALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r-~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 543 (1254)
...+.+.||+|+|||..+...+... .. .+. ++.++. +.| +.+.| |+..... .++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~--~~~--~v~~i~~D~~ri~~~~q----l~~~~~~-~~~~~~~--------- 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HG--KKK--TVGFITTDHSRIGTVQQ----LQDYVKT-IGFEVIA--------- 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HH--cCC--eEEEEecCCCCHHHHHH----HHHHhhh-cCceEEe---------
Confidence 3577888999999998776544332 22 123 444443 333 33333 3321111 1322211
Q ss_pred hhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 000849 544 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLAN 623 (1254)
Q Consensus 544 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~~ 623 (1254)
..+|+.+...++... ...+++++|||-+=+... .... +..+..+.....+...++.+|||..
T Consensus 136 ---------~~~~~~l~~~l~~l~---~~~~~D~ViIDt~Gr~~~-~~~~----l~el~~~~~~~~~~~~~LVl~a~~~- 197 (270)
T PRK06731 136 ---------VRDEAAMTRALTYFK---EEARVDYILIDTAGKNYR-ASET----VEEMIETMGQVEPDYICLTLSASMK- 197 (270)
T ss_pred ---------cCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCcC-CHHH----HHHHHHHHhhhCCCeEEEEEcCccC-
Confidence 124555533333321 123679999999965431 1222 3333333333344556778999973
Q ss_pred hHHHHHh
Q 000849 624 AKDLGEW 630 (1254)
Q Consensus 624 ~~~l~~~ 630 (1254)
..++.++
T Consensus 198 ~~d~~~~ 204 (270)
T PRK06731 198 SKDMIEI 204 (270)
T ss_pred HHHHHHH
Confidence 3334333
No 431
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.35 E-value=1.3 Score=49.27 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=29.4
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcc
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAP 508 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P 508 (1254)
+.+..+++.||+|+|||..+...+.+.+.+ +. +++|+.-
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge--~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASR---GN--PVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CC--cEEEEEe
Confidence 466778889999999999887766655443 44 7888873
No 432
>PRK09354 recA recombinase A; Provisional
Probab=91.26 E-value=0.47 Score=54.36 Aligned_cols=46 Identities=35% Similarity=0.395 Sum_probs=35.8
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHH
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAK 514 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~ 514 (1254)
++...++.+.||+|||||..++..+...... ++ +++|+..-.++-.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~---G~--~~~yId~E~s~~~ 102 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKA---GG--TAAFIDAEHALDP 102 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CC--cEEEECCccchHH
Confidence 4567788889999999999988777665544 55 8999987766654
No 433
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.21 E-value=1.1 Score=53.90 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-ccccccc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVETAMD 542 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~ 542 (1254)
+..+..+++-|+||+|||..++-.+...... .+. +++|+. ...-..|+..++-.... |+....+ .|.....
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~--~v~~fS-lEm~~~~l~~Rl~~~~~---~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR--EGK--PVLFFS-LEMSAEQLGERLLASKS---GINTGNIRTGRFNDS 262 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEE-CCCCHHHHHHHHHHHHc---CCCHHHHhcCCCCHH
Confidence 4445566777999999998776555444322 233 677775 22234444444433222 2222111 2222111
Q ss_pred --------hhhcccCcEEEEc-----HhhHHHHHHhhhcccccceeeEEEecccccccC----CCccHHHHHHHHHHHHH
Q 000849 543 --------LKLLEKGQIIIST-----PEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG----QGGPVLEVIVARMRYIA 605 (1254)
Q Consensus 543 --------~~~~~~~~Iiv~T-----pe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~----~~g~~~e~~~~~l~~~~ 605 (1254)
...+.+.++.|.- ++.+....++.... ...+++||||=.|.+.. ++...+..+...++.+.
T Consensus 263 ~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lA 340 (421)
T TIGR03600 263 DFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRK--KGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALA 340 (421)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1122334565543 33333333332221 22589999999998874 22233445666677665
Q ss_pred hhcCCCcEEEEecCC
Q 000849 606 SQVENKIRIVALSTS 620 (1254)
Q Consensus 606 ~~~~~~~rii~lSAT 620 (1254)
+. .++.+|++|-.
T Consensus 341 ke--~~i~Vi~lsQl 353 (421)
T TIGR03600 341 KE--LDVPVVLLAQL 353 (421)
T ss_pred HH--hCCcEEEeccc
Confidence 43 46788888765
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.19 E-value=0.43 Score=52.01 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=34.2
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHH
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE 521 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~ 521 (1254)
++.+..+++.||+|+|||+.+...+...+.. +. +++|+.... -..+..+.+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~--~~~yi~~e~-~~~~~~~~~~ 72 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN---GY--SVSYVSTQL-TTTEFIKQMM 72 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CC--cEEEEeCCC-CHHHHHHHHH
Confidence 5667788899999999999876555544333 34 788887432 2344444443
No 435
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.19 E-value=2.6 Score=49.35 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=29.6
Q ss_pred eeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 000849 574 QVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLA 622 (1254)
Q Consensus 574 ~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSATl~ 622 (1254)
++++++||.++.+....+. -+.++.-+..+. ..+.|+|+.|...|
T Consensus 175 ~~dlllIDDiq~l~gk~~~-qeefFh~FN~l~---~~~kqIvltsdr~P 219 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERT-QEEFFHTFNALL---ENGKQIVLTSDRPP 219 (408)
T ss_pred ccCeeeechHhHhcCChhH-HHHHHHHHHHHH---hcCCEEEEEcCCCc
Confidence 7899999999999864333 334444444443 23448888886665
No 436
>PRK08506 replicative DNA helicase; Provisional
Probab=91.18 E-value=0.98 Score=54.83 Aligned_cols=144 Identities=21% Similarity=0.202 Sum_probs=77.7
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-ccccccc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVETAMD 542 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~ 542 (1254)
+..+..+++-|.||.|||..++-.+.+.... +. +++|+.. ..-..|+..++-.... ++....+ .|.....
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~--~V~~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~~~l~~~ 259 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DK--GVAFFSL-EMPAEQLMLRMLSAKT---SIPLQNLRTGDLDDD 259 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CC--cEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHHhcCCCCHH
Confidence 3344556667999999998776665554322 33 5666643 3445566666544322 2222111 2222211
Q ss_pred --------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccCC-----CccHHHHHHHHHHHH
Q 000849 543 --------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVARMRYI 604 (1254)
Q Consensus 543 --------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~~e~~~~~l~~~ 604 (1254)
...+.+..+.|- |+..+....++.... ...+++||||=.+.+... +...+..+...++.+
T Consensus 260 e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~--~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~l 337 (472)
T PRK08506 260 EWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQ--HPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLL 337 (472)
T ss_pred HHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 112234455553 444454444443222 235899999999988642 222344455666666
Q ss_pred HhhcCCCcEEEEecCC
Q 000849 605 ASQVENKIRIVALSTS 620 (1254)
Q Consensus 605 ~~~~~~~~rii~lSAT 620 (1254)
.+. -++.+|++|-.
T Consensus 338 Ake--l~ipVi~lsQL 351 (472)
T PRK08506 338 ARE--LDIPIIALSQL 351 (472)
T ss_pred HHH--hCCcEEEEeec
Confidence 543 46788888754
No 437
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=91.08 E-value=0.51 Score=53.81 Aligned_cols=75 Identities=13% Similarity=0.320 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEech-----------------------------------hhhhhcCccceEEEEecCcc
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTA-----------------------------------NLAWGVNLPAHTVIIKGTQV 45 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~-----------------------------------tl~~Gvnlp~~~vii~~~~~ 45 (1254)
||..-|.-|=+.|++|..++++||. -.++||++-.+..|| -
T Consensus 302 LP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~Vl----N 377 (569)
T KOG0346|consen 302 LPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVL----N 377 (569)
T ss_pred ccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeee----e
Confidence 5667788889999999999999998 246788888888888 3
Q ss_pred ccCCCCccccCCHHHHHHHhcccCCCCCCCcceEEEEecCCc
Q 000849 46 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 87 (1254)
Q Consensus 46 ~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~i~~~~~~ 87 (1254)
|| .|-++..|.+++||.+|.+-. |.++=++...+
T Consensus 378 FD------~P~t~~sYIHRvGRTaRg~n~--GtalSfv~P~e 411 (569)
T KOG0346|consen 378 FD------FPETVTSYIHRVGRTARGNNK--GTALSFVSPKE 411 (569)
T ss_pred cC------CCCchHHHHHhccccccCCCC--CceEEEecchH
Confidence 66 577899999999999997666 77666665533
No 438
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.08 E-value=0.22 Score=59.84 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=37.1
Q ss_pred hcccCCChHHHHHHhhC----CcceeeeeeccCCCchHHHHHHHHHHHHHh
Q 000849 448 KLMFARLPAKQRITAAL----PNIILVLQLAPTGSGKTICAEFAILRNHQR 494 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i----~~~~~viv~apTGsGKT~~~~l~il~~l~~ 494 (1254)
-+||+|++-|.+.++++ +.+.+-|..+|||+|||+..+-+.+.-+..
T Consensus 11 ~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 11 PFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 47888888888877776 677899999999999998776666655444
No 439
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.01 E-value=0.9 Score=55.33 Aligned_cols=42 Identities=14% Similarity=0.355 Sum_probs=26.2
Q ss_pred cccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 570 KYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 570 ~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
+.....+++||||+|.+.. .....+ .......+...++|+.+
T Consensus 113 P~~~~~KVvIIDEad~Lt~---~A~NAL----LK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 113 PSMARFKIFIIDEVHMLTK---EAFNAL----LKTLEEPPSYVKFILAT 154 (535)
T ss_pred cccCCeEEEEEECcccCCH---HHHHHH----HHHHhhcCCceEEEEEE
Confidence 3456789999999998873 122223 33333335667777765
No 440
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.01 E-value=1.1 Score=48.62 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcch
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPI 509 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~ 509 (1254)
+..+.++.+.||+|+|||..+...+.+.+.. +. +++|+.--
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~---~~--~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKN---GK--KVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEECC
Confidence 4566788889999999998887766655443 44 78887543
No 441
>PF05729 NACHT: NACHT domain
Probab=90.98 E-value=1.5 Score=44.64 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=25.5
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCC-cEEEEEcchHHHHH
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGV-MRAVYIAPIEALAK 514 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~-~~vl~i~P~r~La~ 514 (1254)
.+++.|+.|+|||....-.+ ..+........ ..+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLA-QQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHHHHH-HHHHhcCcccccceEEEEEeehhhhh
Confidence 57888999999998765433 33433222211 13455555555444
No 442
>PRK06921 hypothetical protein; Provisional
Probab=90.97 E-value=1 Score=50.21 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=26.7
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
...+++.||||+|||..+ .++...+.. ..+ ..++|+.. ..+..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~-~~g--~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMR-KKG--VPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhh-hcC--ceEEEEEH-HHHHHH
Confidence 445777799999999876 355555554 112 26777654 344333
No 443
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.80 E-value=0.43 Score=64.99 Aligned_cols=124 Identities=18% Similarity=0.083 Sum_probs=74.0
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEE
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v 532 (1254)
.++.|++++.. .+..++|.|.-|||||.+..--+++.+....+.. ++++++=|++.|.++..++.+.+.....-..
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~--~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p 77 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDID--RLLVVTFTNAAAREMKERIEEALQKALQQEP 77 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHh--hEEEEeccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 35666666663 3445666699999999998877777776522223 6999999999999999999987765311100
Q ss_pred EEeccccccchhhcccCcEEEEcHhhH-HHHHHhhhcccccceeeEEEeccccc
Q 000849 533 VELTVETAMDLKLLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDELHL 585 (1254)
Q Consensus 533 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~v~liIiDEaH~ 585 (1254)
...........-...-|+|-..| ..+++.......+ +-++=|.||...
T Consensus 78 ----~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 78 ----NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred ----hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 00000011111235678888877 4555553222111 113345777763
No 444
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.74 E-value=0.75 Score=54.71 Aligned_cols=21 Identities=24% Similarity=0.039 Sum_probs=16.8
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+++.||.|+|||.++...
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHH
Confidence 345778899999999988654
No 445
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.73 E-value=0.95 Score=61.51 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=48.4
Q ss_pred HhhcccCCChHHHHHHhhCC--cceeeeeeccCCCchHHHHH--HHHHHHHHhhcCCCCcEEEEEcchHHHHHHH
Q 000849 446 SRKLMFARLPAKQRITAALP--NIILVLQLAPTGSGKTICAE--FAILRNHQRASETGVMRAVYIAPIEALAKQR 516 (1254)
Q Consensus 446 ~~~~~f~~~~~Q~~~~~~i~--~~~~viv~apTGsGKT~~~~--l~il~~l~~~~~~~~~~vl~i~P~r~La~q~ 516 (1254)
...+.+.+++-|++++..+- .+..++++|..|+|||++.- +.++..+.. ..+.+++.++||-.-+..+
T Consensus 829 ~~~~~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 829 PGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred hhhhhcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHH
Confidence 34556789999999999885 45889999999999998742 222333222 2233789999997766554
No 446
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.60 E-value=1.6 Score=52.79 Aligned_cols=144 Identities=21% Similarity=0.187 Sum_probs=75.6
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEE-eccccccc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVE-LTVETAMD 542 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~-~~g~~~~~ 542 (1254)
+..+..+++.|+||+|||..+.-.+.+.... .+. .++|++. ..-..|+..++..... ++.... ..|.....
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--~g~--~vl~~Sl-Em~~~~i~~R~~~~~~---~v~~~~~~~g~l~~~ 263 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIK--EGK--PVAFFSL-EMSAEQLAMRMLSSES---RVDSQKLRTGKLSDE 263 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--CCC--eEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHhccCCCCHH
Confidence 4455667777999999998776555544432 233 5666643 2334444555443222 222111 12221111
Q ss_pred --------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccC-C----CccHHHHHHHHHHHH
Q 000849 543 --------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q----GGPVLEVIVARMRYI 604 (1254)
Q Consensus 543 --------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~----~g~~~e~~~~~l~~~ 604 (1254)
...+.+..+.|. |++.+...+++.... ..+++||||=.+.+.. . +...+..+...++.+
T Consensus 264 ~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~---~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~l 340 (434)
T TIGR00665 264 DWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKRE---HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKAL 340 (434)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 112233345552 344444334433222 2479999999998863 2 122345556667766
Q ss_pred HhhcCCCcEEEEecCC
Q 000849 605 ASQVENKIRIVALSTS 620 (1254)
Q Consensus 605 ~~~~~~~~rii~lSAT 620 (1254)
... .++.++++|-.
T Consensus 341 A~e--~~i~vi~lsql 354 (434)
T TIGR00665 341 AKE--LNVPVIALSQL 354 (434)
T ss_pred HHH--hCCeEEEEecc
Confidence 544 46788888754
No 447
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.58 E-value=0.26 Score=55.90 Aligned_cols=60 Identities=32% Similarity=0.371 Sum_probs=41.6
Q ss_pred CCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCC
Q 000849 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETG 499 (1254)
Q Consensus 420 ~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~ 499 (1254)
..+++.|.+.+..+...+.|++++ ||||||||+.. -+++..+....+..
T Consensus 115 g~~~~~~~~~L~~~v~~~~~ilI~------------------------------G~tGSGKTTll-~al~~~i~~~~~~~ 163 (299)
T TIGR02782 115 GIMTAAQRDVLREAVLARKNILVV------------------------------GGTGSGKTTLA-NALLAEIAKNDPTD 163 (299)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEE------------------------------CCCCCCHHHHH-HHHHHHhhccCCCc
Confidence 356667777777776666677777 99999999865 44555554312344
Q ss_pred CcEEEEEcchHHH
Q 000849 500 VMRAVYIAPIEAL 512 (1254)
Q Consensus 500 ~~~vl~i~P~r~L 512 (1254)
+++++-...++
T Consensus 164 --ri~tiEd~~El 174 (299)
T TIGR02782 164 --RVVIIEDTREL 174 (299)
T ss_pred --eEEEECCchhh
Confidence 88888888776
No 448
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.58 E-value=0.91 Score=56.36 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=17.9
Q ss_pred cceeeeeeccCCCchHHHHHHHH
Q 000849 466 NIILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~i 488 (1254)
-++.+++.||.|+|||.++...+
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34567888999999999886543
No 449
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.52 E-value=0.95 Score=56.26 Aligned_cols=43 Identities=14% Similarity=0.398 Sum_probs=26.8
Q ss_pred ccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 569 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 569 ~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
...+...+++||||+|.+.. .....++. ..+..+....+|+.+
T Consensus 127 ~P~~a~~KVvIIDEad~Ls~---~a~naLLK----tLEePp~~~~fIl~t 169 (598)
T PRK09111 127 RPVSARYKVYIIDEVHMLST---AAFNALLK----TLEEPPPHVKFIFAT 169 (598)
T ss_pred chhcCCcEEEEEEChHhCCH---HHHHHHHH----HHHhCCCCeEEEEEe
Confidence 34567889999999999873 22233333 333335567777755
No 450
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=0.82 Score=56.93 Aligned_cols=21 Identities=24% Similarity=0.039 Sum_probs=17.1
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+++.||.|+|||+++...
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHH
Confidence 455888899999999988554
No 451
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=90.48 E-value=0.4 Score=47.78 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=48.1
Q ss_pred ecCCCCHHHHHHHHHHHhcCCc---eEEEeCcc--cccccCCcc---eee-ccccc------------------------
Q 000849 749 LHEGLNKSDQEVVSTLFEAGKI---KVCVMSSS--MCWEVPLTA---HLA-TGRKM------------------------ 795 (1254)
Q Consensus 749 ~h~~l~~~~R~~v~~~F~~g~~---~VLVaT~~--l~~Gvdip~---~~V-~~~~~------------------------ 795 (1254)
+.-+....+...+++.|++..- .||+|+.- +++|||+|. ..| ....|
T Consensus 24 ~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 103 (142)
T smart00491 24 FIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRP 103 (142)
T ss_pred EEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCc
Confidence 3333333455788888987543 69998877 999999992 233 10000
Q ss_pred -------CCHHHHHHhhcccCCCCCCCCceEEEEc
Q 000849 796 -------LILTTLLQMMGHAGRPLLDNSEKCVILC 823 (1254)
Q Consensus 796 -------~s~~~~~Qr~GRaGR~g~d~~G~~iil~ 823 (1254)
.....+.|.+||+-|...| .|..+++-
T Consensus 104 ~~~~~~~~a~~~~~Qa~GR~iR~~~D-~g~i~l~D 137 (142)
T smart00491 104 FDEVYLFDAMRALAQAIGRAIRHKND-YGVVVLLD 137 (142)
T ss_pred HHHHHHHHHHHHHHHHhCccccCccc-eEEEEEEe
Confidence 1225679999999999854 77666553
No 452
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.45 E-value=1.3 Score=52.11 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHCCCceecC
Q 000849 902 LVENTISDLEATRSIIMED 920 (1254)
Q Consensus 902 ~i~~~l~~L~~~g~i~~~~ 920 (1254)
.+.+.+..|+..|+|+...
T Consensus 333 ~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 333 RISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHHHHHhcCCeEEEE
Confidence 4677889999999998753
No 453
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.43 E-value=1.2 Score=51.65 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.4
Q ss_pred eeeeeccCCCchHHHHHHH
Q 000849 469 LVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~ 487 (1254)
.+++.||+|+|||..+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5777899999999887543
No 454
>PRK07004 replicative DNA helicase; Provisional
Probab=90.41 E-value=1.2 Score=53.99 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=75.8
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-ccccccc-
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVETAMD- 542 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~- 542 (1254)
..+..+++.|.||+|||..++-.+...... .+. .++|.+ ...-..|+..++-...+ ++....+ .|.....
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~--~v~~fS-lEM~~~ql~~R~la~~~---~v~~~~i~~g~l~~~e 282 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGL--PVAVFS-MEMPGTQLAMRMLGSVG---RLDQHRMRTGRLTDED 282 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCC--eEEEEe-CCCCHHHHHHHHHHhhc---CCCHHHHhcCCCCHHH
Confidence 344456666999999998765544433322 233 555553 22334455555433222 1111111 2222211
Q ss_pred -------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccCC-----CccHHHHHHHHHHHHH
Q 000849 543 -------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVARMRYIA 605 (1254)
Q Consensus 543 -------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~~e~~~~~l~~~~ 605 (1254)
...+.+..+.|. |+..+....++.... ...+++||||=.|.+... +...+..+...++.+.
T Consensus 283 ~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~--~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lA 360 (460)
T PRK07004 283 WPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQ--CGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLA 360 (460)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 123345566663 444443333433221 235799999999999731 2234566677777776
Q ss_pred hhcCCCcEEEEecCC
Q 000849 606 SQVENKIRIVALSTS 620 (1254)
Q Consensus 606 ~~~~~~~rii~lSAT 620 (1254)
+. .++.+|++|--
T Consensus 361 ke--l~ipVi~lsQL 373 (460)
T PRK07004 361 KE--LDVPVIALSQL 373 (460)
T ss_pred HH--hCCeEEEEecc
Confidence 54 47888888854
No 455
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.32 E-value=0.83 Score=52.51 Aligned_cols=45 Identities=4% Similarity=0.068 Sum_probs=26.2
Q ss_pred ccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCC
Q 000849 569 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 569 ~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSAT 620 (1254)
.......+++||||+|.|... . ...+.+..+..+.+..+|++|..
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~---a----aNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRN---A----ANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred ccccCCCeEEEECChhhCCHH---H----HHHHHHHHhCCCCCeEEEEEECC
Confidence 344567899999999998731 1 22222233333455666655543
No 456
>PRK08760 replicative DNA helicase; Provisional
Probab=90.24 E-value=1.2 Score=54.09 Aligned_cols=144 Identities=22% Similarity=0.243 Sum_probs=78.2
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-ccccccc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVETAMD 542 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~ 542 (1254)
+.....+++-|.||.|||..++-.+...... .+. .|+|.+. ..-..|+..++...... +....+ .|.....
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~--~g~--~V~~fSl-EMs~~ql~~Rl~a~~s~---i~~~~i~~g~l~~~ 297 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIK--SKK--GVAVFSM-EMSASQLAMRLISSNGR---INAQRLRTGALEDE 297 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHh--cCC--ceEEEec-cCCHHHHHHHHHHhhCC---CcHHHHhcCCCCHH
Confidence 3445556677999999998776555443322 133 5666643 22344555555443221 111111 1221111
Q ss_pred --------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccC-----CCccHHHHHHHHHHHH
Q 000849 543 --------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-----QGGPVLEVIVARMRYI 604 (1254)
Q Consensus 543 --------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-----~~g~~~e~~~~~l~~~ 604 (1254)
...+.+..+.|. |++.+....++... -..+++||||=.+.+.. .|...+..+...++.+
T Consensus 298 e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~---~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~l 374 (476)
T PRK08760 298 DWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR---EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGL 374 (476)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHH
Confidence 112334456554 44555444444332 23589999999998852 2334456677777777
Q ss_pred HhhcCCCcEEEEecCC
Q 000849 605 ASQVENKIRIVALSTS 620 (1254)
Q Consensus 605 ~~~~~~~~rii~lSAT 620 (1254)
.+. -++.+|++|-.
T Consensus 375 Ake--l~ipVi~lsQL 388 (476)
T PRK08760 375 AKE--LNVPVIALSQL 388 (476)
T ss_pred HHH--hCCEEEEeecc
Confidence 654 47888888854
No 457
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=90.24 E-value=0.98 Score=54.31 Aligned_cols=84 Identities=18% Similarity=-0.016 Sum_probs=67.9
Q ss_pred hccceeecCCCCHHHHHHHHHHHhcCCc-eEEEeCcccccccCCc-ceee-cccccCCHHHHHHhhcccCCCCCCCCceE
Q 000849 743 RLGVGYLHEGLNKSDQEVVSTLFEAGKI-KVCVMSSSMCWEVPLT-AHLA-TGRKMLILTTLLQMMGHAGRPLLDNSEKC 819 (1254)
Q Consensus 743 ~~~v~~~h~~l~~~~R~~v~~~F~~g~~-~VLVaT~~l~~Gvdip-~~~V-~~~~~~s~~~~~Qr~GRaGR~g~d~~G~~ 819 (1254)
++.-.-+.|+....+|..+...|....+ -.|++|.+.+-|||+. +++| .++...++.-=.|.+.||-|.|+...-.+
T Consensus 1068 ~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1068 GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 4556668899999999999999988655 4577999999999999 5555 66777788888899999999998666777
Q ss_pred EEEccCC
Q 000849 820 VILCHAP 826 (1254)
Q Consensus 820 iil~~~~ 826 (1254)
|.+....
T Consensus 1148 yrl~~rg 1154 (1185)
T KOG0388|consen 1148 YRLITRG 1154 (1185)
T ss_pred eeecccc
Confidence 7766544
No 458
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.15 E-value=0.66 Score=55.28 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=46.3
Q ss_pred CChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhh---cCCCCcEEEEEcchHHHHHHHHHHHH
Q 000849 453 RLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRA---SETGVMRAVYIAPIEALAKQRYCDWE 521 (1254)
Q Consensus 453 ~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~---~~~~~~~vl~i~P~r~La~q~~~~~~ 521 (1254)
..+.|.+|+.. ..+.++||+|..|||||.+++.-+...+... -..+ .++++.|.+.+..-+...+-
T Consensus 213 IQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k--~vlvl~PN~vFleYis~VLP 281 (747)
T COG3973 213 IQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAK--PVLVLGPNRVFLEYISRVLP 281 (747)
T ss_pred hhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccC--ceEEEcCcHHHHHHHHHhch
Confidence 34455555543 4677899999999999999987655544442 1223 59999999998877665544
No 459
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.04 E-value=1.6 Score=60.35 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=48.8
Q ss_pred HHhhcccCCChHHHHHHhhCCc--ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHH
Q 000849 445 LSRKLMFARLPAKQRITAALPN--IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQ 515 (1254)
Q Consensus 445 ~~~~~~f~~~~~Q~~~~~~i~~--~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q 515 (1254)
....+.+.+++-|++++..+-. ..+++++|..|+|||++.- +++..+.......+.+++.++||---+.+
T Consensus 960 ~~~~~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 960 VPGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred HHHHhcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 3445667899999999999854 5799999999999998752 33333332111223478999999776654
No 460
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.04 E-value=1.9 Score=46.81 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHH
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWE 521 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~ 521 (1254)
++.+..+++.||+|+|||..+...+.+.+.+. +. +++|++-. +-..++.+.+.
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge--~vlyvs~e-e~~~~l~~~~~ 68 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNF--GE--KVLYVSFE-EPPEELIENMK 68 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T----EEEEESS-S-HHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CC--cEEEEEec-CCHHHHHHHHH
Confidence 45677889999999999998887777665541 33 67887732 33345444444
No 461
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.95 E-value=1.2 Score=54.58 Aligned_cols=41 Identities=12% Similarity=0.356 Sum_probs=25.3
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
.....+++||||+|.+... ....++ ...+..+....+|+.+
T Consensus 116 ~~g~~kViIIDEa~~ls~~---a~naLL----K~LEepp~~v~fIL~T 156 (546)
T PRK14957 116 SQGRYKVYLIDEVHMLSKQ---SFNALL----KTLEEPPEYVKFILAT 156 (546)
T ss_pred hcCCcEEEEEechhhccHH---HHHHHH----HHHhcCCCCceEEEEE
Confidence 4567899999999998731 222233 3333334566777655
No 462
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.92 E-value=1.6 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=17.6
Q ss_pred ceeeeeeccCCCchHHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~i 488 (1254)
++.+++.||.|+|||.++-...
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567888999999999886544
No 463
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.89 E-value=2.6 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=18.1
Q ss_pred eeeeeeccCCCchHHHHHHHHHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEFAILRNHQ 493 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~il~~l~ 493 (1254)
+.+++.||.|+|||+++.. +.+.+.
T Consensus 37 ha~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHh
Confidence 4468889999999998754 344443
No 464
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=0.91 Score=55.52 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=62.9
Q ss_pred cCCChHHHHHHhhC--------CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 451 FARLPAKQRITAAL--------PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 451 f~~~~~Q~~~~~~i--------~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
|.+-...++|++-+ ..+.+++++||+|.|||-.+ ..+++.+.+
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLg-----------------------------kSIA~al~R 376 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLG-----------------------------KSIAKALGR 376 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHH-----------------------------HHHHHHhCC
Confidence 44444555555555 24567888899999999543 333333333
Q ss_pred hhccccCcEEEEeccccccchhhcccCcE-EEEcHhhHHHHHHhhhcccccceeeEEEecccccccC-CCccHHHHHHHH
Q 000849 523 KFGKELGMCVVELTVETAMDLKLLEKGQI-IISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVAR 600 (1254)
Q Consensus 523 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~I-iv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-~~g~~~e~~~~~ 600 (1254)
+| |...-|+.....+....-+- |=+-||++..-+++... .--++++||+|.++. .+|.....++.-
T Consensus 377 kf-------vR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~-----~NPv~LLDEIDKm~ss~rGDPaSALLEV 444 (782)
T COG0466 377 KF-------VRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV-----KNPVFLLDEIDKMGSSFRGDPASALLEV 444 (782)
T ss_pred CE-------EEEecCccccHHHhccccccccccCChHHHHHHHHhCC-----cCCeEEeechhhccCCCCCChHHHHHhh
Confidence 23 22233554433222211223 33569998555555332 224899999999997 577776666655
Q ss_pred H
Q 000849 601 M 601 (1254)
Q Consensus 601 l 601 (1254)
+
T Consensus 445 L 445 (782)
T COG0466 445 L 445 (782)
T ss_pred c
Confidence 4
No 465
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=89.85 E-value=0.31 Score=55.64 Aligned_cols=60 Identities=25% Similarity=0.297 Sum_probs=40.4
Q ss_pred CCcChHHHHHHHHHhcCCchHHHHHHHhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCC
Q 000849 420 KLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETG 499 (1254)
Q Consensus 420 ~~~~~~Q~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~ 499 (1254)
..+++.|.+.+..+...+.|++++ |+||||||... -+++..+....+..
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~------------------------------G~tGSGKTTll-~aL~~~~~~~~~~~ 179 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVI------------------------------GGTGSGKTTLV-NAIINEMVIQDPTE 179 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEE------------------------------CCCCCCHHHHH-HHHHHhhhhcCCCc
Confidence 456677877777776666777777 99999999654 44554433212334
Q ss_pred CcEEEEEcchHHH
Q 000849 500 VMRAVYIAPIEAL 512 (1254)
Q Consensus 500 ~~~vl~i~P~r~L 512 (1254)
+++++-.+.++
T Consensus 180 --rivtIEd~~El 190 (319)
T PRK13894 180 --RVFIIEDTGEI 190 (319)
T ss_pred --eEEEEcCCCcc
Confidence 78888887766
No 466
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=89.53 E-value=1.1 Score=63.25 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=46.4
Q ss_pred cccCCChHHHHHHhhCC--cceeeeeeccCCCchHHHHH---HHHHHHHHhhcCCCCcEEEEEcchHHHHHHH
Q 000849 449 LMFARLPAKQRITAALP--NIILVLQLAPTGSGKTICAE---FAILRNHQRASETGVMRAVYIAPIEALAKQR 516 (1254)
Q Consensus 449 ~~f~~~~~Q~~~~~~i~--~~~~viv~apTGsGKT~~~~---l~il~~l~~~~~~~~~~vl~i~P~r~La~q~ 516 (1254)
..+.+++.|++++..+- .+..++++|+.|+|||++.. -++.+.+.. .+ .+++.++||-.-+.++
T Consensus 1016 ~~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g--~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1016 LLERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQ--LQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred ccCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cC--CeEEEEeChHHHHHHH
Confidence 35789999999999873 45788999999999998762 233333332 23 3899999997766554
No 467
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.51 E-value=2.3 Score=45.93 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA 507 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~ 507 (1254)
+.....+++.|++|+|||..+...+...... ++ +++|+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~---g~--~v~yi~ 54 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQ---GK--KVAYID 54 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CC--eEEEEE
Confidence 4567788899999999999887766554433 44 788883
No 468
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.50 E-value=0.62 Score=61.60 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCCCcEEEechhhhhhcCccc---eEEEEecCccccCC---------------CCccccC----CHHHH
Q 000849 4 GDRQLVEDLFCDGHVQVLVSTANLAWGVNLPA---HTVIIKGTQVYNPE---------------KGAWTEL----SPLDI 61 (1254)
Q Consensus 4 ~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~---~~vii~~~~~~~~~---------------~~~~~~~----~~~~~ 61 (1254)
..|..+.+.|+++.=.||++|.++..|||+|. ..|||-+.-+-.|. +..|.++ .+..+
T Consensus 791 ~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~l 870 (928)
T PRK08074 791 GSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRF 870 (928)
T ss_pred CCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHH
Confidence 35778888899888889999999999999997 57888776553332 1223333 36788
Q ss_pred HHHhcccCCCCCCCcceEEEEecCCcHHHHHHhhcCCCC
Q 000849 62 MQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLP 100 (1254)
Q Consensus 62 ~qm~GRAGR~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 100 (1254)
+|.+||.=|...| .|.++|+-..-....|-+.+-...|
T Consensus 871 kQg~GRlIRs~~D-~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 871 KQGFGRLIRTETD-RGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred HhhhhhhcccCCc-eEEEEEecCccccchHHHHHHHhCC
Confidence 9999999997665 7876666544333456544444333
No 469
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.46 E-value=1.8 Score=53.32 Aligned_cols=42 Identities=12% Similarity=0.367 Sum_probs=25.4
Q ss_pred cccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 570 KYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 570 ~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
....+.+++||||+|.+.. .....++ +..+..+....+|+.+
T Consensus 115 p~~~~~kVvIIDEad~ls~---~a~naLL----K~LEepp~~~~fIL~t 156 (527)
T PRK14969 115 PTRGRFKVYIIDEVHMLSK---SAFNAML----KTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCceEEEEcCcccCCH---HHHHHHH----HHHhCCCCCEEEEEEe
Confidence 3456789999999998873 1222222 2333334566777665
No 470
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.43 E-value=3.3 Score=42.85 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=26.2
Q ss_pred eeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHH
Q 000849 469 LVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDW 520 (1254)
Q Consensus 469 ~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~ 520 (1254)
++++.||+|+|||......+. .+.. .+. +++++. +.+.-..+....+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~-~~~~--~g~--~v~~i~~D~~~~~~~~~l~~~ 50 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL-YLKK--KGK--KVLLVAADTYRPAAIEQLRVL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--CCC--cEEEEEcCCCChHHHHHHHHh
Confidence 456779999999988754433 3333 133 555544 4443333333333
No 471
>PRK05636 replicative DNA helicase; Provisional
Probab=89.40 E-value=1.7 Score=52.99 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=73.2
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-ccccccc-
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVETAMD- 542 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~- 542 (1254)
.....+++-|.||+|||..++-.+.....+ .+. .++|. ....-..|+..++-.... ++....+ .|....+
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~--~g~--~v~~f-SlEMs~~ql~~R~ls~~s---~v~~~~i~~g~l~~~e 334 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIK--HNK--ASVIF-SLEMSKSEIVMRLLSAEA---EVRLSDMRGGKMDEDA 334 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--eEEEE-EeeCCHHHHHHHHHHHhc---CCCHHHHhcCCCCHHH
Confidence 344456666999999998776444433322 233 56665 222223444444432221 1111111 1221111
Q ss_pred -------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccCC-----CccHHHHHHHHHHHHH
Q 000849 543 -------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVARMRYIA 605 (1254)
Q Consensus 543 -------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~-----~g~~~e~~~~~l~~~~ 605 (1254)
...+.+..+.|. |...+....++... -..+++||||=.|.+... +...+..+...++.+.
T Consensus 335 ~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~---~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lA 411 (505)
T PRK05636 335 WEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ---KHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLA 411 (505)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---hcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 112334556653 33333333333222 235899999999999742 2234556677777776
Q ss_pred hhcCCCcEEEEecC
Q 000849 606 SQVENKIRIVALST 619 (1254)
Q Consensus 606 ~~~~~~~rii~lSA 619 (1254)
+. -++.+|++|-
T Consensus 412 ke--l~ipVi~lsQ 423 (505)
T PRK05636 412 KE--LDVPLIAISQ 423 (505)
T ss_pred HH--hCCeEEEEee
Confidence 54 4688888874
No 472
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.32 E-value=1.1 Score=52.73 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.2
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+++.||.|+|||..+...
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 466889999999999887544
No 473
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.31 E-value=1.5 Score=54.28 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=17.6
Q ss_pred ceeeeeeccCCCchHHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~i 488 (1254)
.+.+++.||.|+|||.++...+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3567788999999999886544
No 474
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.30 E-value=1.2 Score=56.03 Aligned_cols=71 Identities=23% Similarity=0.180 Sum_probs=58.8
Q ss_pred HHHhhhhcCCCeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCH
Q 000849 676 AIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNK 755 (1254)
Q Consensus 676 ~i~~~~~~~~~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~ 755 (1254)
.+.+.+..++++||.++....+..+...|..++. ...+..+|++++.
T Consensus 180 ~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~---------------------------------~~~v~~lhS~l~~ 226 (665)
T PRK14873 180 AAAATLRAGRGALVVVPDQRDVDRLEAALRALLG---------------------------------AGDVAVLSAGLGP 226 (665)
T ss_pred HHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC---------------------------------CCcEEEECCCCCH
Confidence 3444457799999999999999988877765431 1358899999999
Q ss_pred HHHHHHHHHHhcCCceEEEeCccc
Q 000849 756 SDQEVVSTLFEAGKIKVCVMSSSM 779 (1254)
Q Consensus 756 ~~R~~v~~~F~~g~~~VLVaT~~l 779 (1254)
.+|........+|+.+|+|.|..+
T Consensus 227 ~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 227 ADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred HHHHHHHHHHhCCCCcEEEEccee
Confidence 999999999999999999999763
No 475
>PF13871 Helicase_C_4: Helicase_C-like
Probab=89.25 E-value=0.73 Score=50.88 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHhcCCceEEEeCcccccccCCcce-ee---------cccccCCHHHHHHhhcccCCCCCC
Q 000849 760 VVSTLFEAGKIKVCVMSSSMCWEVPLTAH-LA---------TGRKMLILTTLLQMMGHAGRPLLD 814 (1254)
Q Consensus 760 ~v~~~F~~g~~~VLVaT~~l~~Gvdip~~-~V---------~~~~~~s~~~~~Qr~GRaGR~g~d 814 (1254)
...+.|.+|+.+|+|.|.+.+.|+.+.+. -+ ....|+|....+|..||+-|.++-
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 45678999999999999999999999842 22 334568999999999999999864
No 476
>PRK04195 replication factor C large subunit; Provisional
Probab=89.12 E-value=1.4 Score=54.02 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=15.7
Q ss_pred ceeeeeeccCCCchHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAE 485 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~ 485 (1254)
+..+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4567888999999998774
No 477
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.07 E-value=4 Score=45.87 Aligned_cols=129 Identities=14% Similarity=0.205 Sum_probs=71.5
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHhhccccCcEEEEeccccccch
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 543 (1254)
++.+++++|-.|+|||+..--.... +.+ .+. ++++.+ -.||-|.++.+.|.++. |+.+.. +....+.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~-l~~--~g~--~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~--~~~G~Dp 206 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKY-LKQ--QGK--SVLLAAGDTFRAAAIEQLEVWGERL----GVPVIS--GKEGADP 206 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHH-HHH--CCC--eEEEEecchHHHHHHHHHHHHHHHh----CCeEEc--cCCCCCc
Confidence 4778999999999999875433222 222 244 676665 57999999999999875 444433 1111110
Q ss_pred hhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcC---CCcEEEEecCC
Q 000849 544 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVE---NKIRIVALSTS 620 (1254)
Q Consensus 544 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~---~~~rii~lSAT 620 (1254)
+.|+ ++. .... .-++++++++|=|-++....+ +-.=+.++.++....- ++--++.+=||
T Consensus 207 -----AaVa------fDA-i~~A----kar~~DvvliDTAGRLhnk~n--LM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 207 -----AAVA------FDA-IQAA----KARGIDVVLIDTAGRLHNKKN--LMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred -----HHHH------HHH-HHHH----HHcCCCEEEEeCcccccCchh--HHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 0111 122 1221 245788999999988875332 1111333444433211 12245555888
Q ss_pred CCC
Q 000849 621 LAN 623 (1254)
Q Consensus 621 l~~ 623 (1254)
..+
T Consensus 269 tGq 271 (340)
T COG0552 269 TGQ 271 (340)
T ss_pred cCh
Confidence 873
No 478
>PRK08006 replicative DNA helicase; Provisional
Probab=89.04 E-value=3.3 Score=50.14 Aligned_cols=145 Identities=20% Similarity=0.173 Sum_probs=78.5
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-ccccccc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVETAMD 542 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~ 542 (1254)
+.....+++-|.+|.|||..++-.+...... .+. .|+|...- .-..|+..++-.... ++....+ .|.....
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~--~V~~fSlE-M~~~ql~~Rlla~~~---~v~~~~i~~~~l~~~ 292 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDK--PVLIFSLE-MPGEQIMMRMLASLS---RVDQTRIRTGQLDDE 292 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCC--eEEEEecc-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHH
Confidence 3344456666999999998776554443322 233 56666432 334555555554332 2221111 1222111
Q ss_pred --------hhhc-ccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccC-----CCccHHHHHHHHHHH
Q 000849 543 --------LKLL-EKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-----QGGPVLEVIVARMRY 603 (1254)
Q Consensus 543 --------~~~~-~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~-----~~g~~~e~~~~~l~~ 603 (1254)
...+ .+..+.|- |+..+....++.... ...+++||||=.|++.. .+...+..+...++.
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~ 370 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFRE--HGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKA 370 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHH
Confidence 0112 34556553 444444444443221 23589999999999863 233346667777777
Q ss_pred HHhhcCCCcEEEEecCC
Q 000849 604 IASQVENKIRIVALSTS 620 (1254)
Q Consensus 604 ~~~~~~~~~rii~lSAT 620 (1254)
+.+. -++.+|++|-.
T Consensus 371 lAke--l~ipVi~LsQL 385 (471)
T PRK08006 371 LAKE--LQVPVVALSQL 385 (471)
T ss_pred HHHH--hCCeEEEEEec
Confidence 7654 47888888843
No 479
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.00 E-value=3.2 Score=48.24 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=25.1
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecC
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALST 619 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSA 619 (1254)
.....+++||||+|.+... ....++. ..+..+.+..+|++|.
T Consensus 138 ~~g~~rVviIDeAd~l~~~---aanaLLk----~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 138 GDGNWRIVIIDPADDMNRN---AANAILK----TLEEPPARALFILISH 179 (351)
T ss_pred ccCCceEEEEEchhhcCHH---HHHHHHH----HHhcCCCCceEEEEEC
Confidence 3457889999999998731 1222332 2233345566677653
No 480
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.93 E-value=1.9 Score=53.77 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=16.8
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+++.||.|+|||.++...
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~l 58 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARIL 58 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 355788899999999988553
No 481
>PRK10867 signal recognition particle protein; Provisional
Probab=88.91 E-value=4.1 Score=48.54 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=33.3
Q ss_pred ceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEc--chHHHHHHHHHHHHHh
Q 000849 467 IILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIA--PIEALAKQRYCDWERK 523 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~--P~r~La~q~~~~~~~~ 523 (1254)
+.+++++||+|+|||+.+.-.+.. +.. ..+. +++++. +.|+-+.++.+.|.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~-l~~-~~G~--kV~lV~~D~~R~aa~eQL~~~a~~ 154 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY-LKK-KKKK--KVLLVAADVYRPAAIEQLKTLGEQ 154 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH-HHH-hcCC--cEEEEEccccchHHHHHHHHHHhh
Confidence 568899999999999877544432 232 1133 444443 6777776666666553
No 482
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.91 E-value=3.1 Score=50.36 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=86.5
Q ss_pred ccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccC
Q 000849 450 MFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELG 529 (1254)
Q Consensus 450 ~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~ 529 (1254)
-|.....-.+.++...+.-.|.+ -|=-.|||.. +.|++..+... -.+.++.|++.-|-.++-+++++...+.+..+
T Consensus 186 ~Fdi~~~s~~~l~~FKQkaTVFL-VPRRHGKTWf-~VpiIsllL~s--~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~ 261 (668)
T PHA03372 186 VFDIEFLSESSLNIFKQKATVFL-VPRRHGKTWF-IIPIISFLLKN--IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFP 261 (668)
T ss_pred HcCCcccCHHHHHHhhccceEEE-ecccCCceeh-HHHHHHHHHHh--hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcC
Confidence 34444445555555554433332 6999999974 46777666652 23459999999998877766665544433322
Q ss_pred cE-EEEeccccccchhhcccCcEEEEcHhhH---HHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHH
Q 000849 530 MC-VVELTVETAMDLKLLEKGQIIISTPEKW---DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIA 605 (1254)
Q Consensus 530 ~~-v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l---~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~ 605 (1254)
-+ +.... +..|.+.-|+.= ........+...=+++++++|||||.+. ...+..++..|.
T Consensus 262 ~~~vi~~k-----------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~---~~a~~tilgfm~--- 324 (668)
T PHA03372 262 RKHTIENK-----------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK---KDAFNTILGFLA--- 324 (668)
T ss_pred ccceeeec-----------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC---HHHHHHhhhhhc---
Confidence 11 11111 123333333221 0001011122235678999999999876 333444444432
Q ss_pred hhcCCCcEEEEecCCCCChHHHHHhh
Q 000849 606 SQVENKIRIVALSTSLANAKDLGEWI 631 (1254)
Q Consensus 606 ~~~~~~~rii~lSATl~~~~~l~~~l 631 (1254)
..+.++|..|.|-. .++-..|+
T Consensus 325 ---q~~~KiIfISS~Ns-g~~sTSfL 346 (668)
T PHA03372 325 ---QNTTKIIFISSTNT-TNDATCFL 346 (668)
T ss_pred ---ccCceEEEEeCCCC-CCccchHH
Confidence 57899999998842 23333455
No 483
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=88.89 E-value=0.66 Score=46.23 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=49.5
Q ss_pred HHHHHHhCCCC---cEEEechh--hhhhcCccc---eEEEEecCccccCCC----------------Cc----cccCCHH
Q 000849 8 LVEDLFCDGHV---QVLVSTAN--LAWGVNLPA---HTVIIKGTQVYNPEK----------------GA----WTELSPL 59 (1254)
Q Consensus 8 ~ve~~f~~g~i---~vl~~T~t--l~~Gvnlp~---~~vii~~~~~~~~~~----------------~~----~~~~~~~ 59 (1254)
.+-+.|++..- .||+|+.. ++.|||+|. +.|||-|.-+-.+.. .. +.+....
T Consensus 35 ~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 114 (142)
T smart00491 35 ELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMR 114 (142)
T ss_pred HHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34445655332 58888888 999999998 589998875533321 00 1123456
Q ss_pred HHHHHhcccCCCCCCCcceEEEE
Q 000849 60 DIMQMLGRAGRPQYDSYGEGIII 82 (1254)
Q Consensus 60 ~~~qm~GRAGR~~~~~~g~~~i~ 82 (1254)
.+.|.+||+=|...| .|..+++
T Consensus 115 ~~~Qa~GR~iR~~~D-~g~i~l~ 136 (142)
T smart00491 115 ALAQAIGRAIRHKND-YGVVVLL 136 (142)
T ss_pred HHHHHhCccccCccc-eEEEEEE
Confidence 889999999996644 7866665
No 484
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=88.83 E-value=0.67 Score=59.32 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCCcEEEechhhhhhcCccce---EEEEecCcccc-------------------CCCCccccCCHHHHHHH
Q 000849 7 QLVEDLFCDGHVQVLVSTANLAWGVNLPAH---TVIIKGTQVYN-------------------PEKGAWTELSPLDIMQM 64 (1254)
Q Consensus 7 ~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~---~vii~~~~~~~-------------------~~~~~~~~~~~~~~~qm 64 (1254)
.++|+.+.+|...++|+|.+|+.|||+|.. .|||-|.-+=+ |...-+.+.....+.|.
T Consensus 518 ~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~Qa 597 (654)
T COG1199 518 ELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQA 597 (654)
T ss_pred HHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHh
Confidence 477888888877999999999999999985 77888774421 11122344567799999
Q ss_pred hcccCCCCCCCcceEEEEecCCcHHHHHHhhcCC
Q 000849 65 LGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQ 98 (1254)
Q Consensus 65 ~GRAGR~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 98 (1254)
+||+=| +.++.|..+|+-..-....|.+.+.+.
T Consensus 598 vGRlIR-~~~D~G~ivllD~R~~~~~y~~~l~~~ 630 (654)
T COG1199 598 VGRLIR-SEDDRGVIVLLDKRYATKRYGKLLLDS 630 (654)
T ss_pred hccccc-cCCCceEEEEecccchhhhHHHHHHHh
Confidence 999999 677789888886654444566655443
No 485
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=88.71 E-value=2 Score=49.50 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=26.1
Q ss_pred ccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecC
Q 000849 571 YVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALST 619 (1254)
Q Consensus 571 ~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSA 619 (1254)
.....+++|||||+.+..+. ...+.......+.+.++++.+-
T Consensus 106 ~~~~~kviiidead~mt~~A-------~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 106 LEGGYKVVIIDEADKLTEDA-------ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCCceEEEeCcHHHHhHHH-------HHHHHHHhccCCCCeEEEEEcC
Confidence 34678999999999887422 2223333334456677666654
No 486
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.63 E-value=0.31 Score=53.09 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=19.3
Q ss_pred HHHHHhhCCc--ceeeeeeccCCCchHHHH
Q 000849 457 KQRITAALPN--IILVLQLAPTGSGKTICA 484 (1254)
Q Consensus 457 Q~~~~~~i~~--~~~viv~apTGsGKT~~~ 484 (1254)
.+++.+.+.. ...+++.||-|+|||...
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 3444444433 567888899999999753
No 487
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=88.53 E-value=0.73 Score=53.00 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=51.9
Q ss_pred CCccccCCCCCHHHHHHHHcCCCCCccCHHHHhcCCHHHHHHHhcCChhhHHHHHHHhcc
Q 000849 1071 DSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNR 1130 (1254)
Q Consensus 1071 ~~~L~Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~ 1130 (1254)
..||..+|+|++..+++|.+.| |.|+.||+.++++++.++++++++.+..+.+.++.
T Consensus 5 ~~~l~~l~gIg~~~a~~L~~~G---i~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~ 61 (317)
T PRK04301 5 EKDLEDLPGVGPATAEKLREAG---YDTVEAIAVASPKELSEAAGIGESTAAKIIEAARE 61 (317)
T ss_pred cccHhhcCCCCHHHHHHHHHcC---CCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999 99999999999999999999988888888887764
No 488
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=88.52 E-value=0.33 Score=51.38 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=16.5
Q ss_pred eeeeeeccCCCchHHHHHHH-HHHHHH
Q 000849 468 ILVLQLAPTGSGKTICAEFA-ILRNHQ 493 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l~-il~~l~ 493 (1254)
|+.++.|..|||||+.+..- ++..+.
T Consensus 1 mI~~~~G~pGsGKS~~av~~~i~~~l~ 27 (193)
T PF05707_consen 1 MIYLITGKPGSGKSYYAVSYVIIPALK 27 (193)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH-GGG
T ss_pred CEEEEEcCCCCcHhHHHHHHHHHHHHh
Confidence 46788899999999887766 444333
No 489
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.50 E-value=1.1 Score=58.05 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCCcEEEechhhhhhcCcc---ceEEEEecCccccCC---------------CCccccCC----HHHHHH
Q 000849 6 RQLVEDLFCDGHVQVLVSTANLAWGVNLP---AHTVIIKGTQVYNPE---------------KGAWTELS----PLDIMQ 63 (1254)
Q Consensus 6 R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp---~~~vii~~~~~~~~~---------------~~~~~~~~----~~~~~q 63 (1254)
|..+-+.|+++.-.||++|.++..|||+| ...|||-+.-+-.|. ++.|..++ +..++|
T Consensus 683 ~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQ 762 (820)
T PRK07246 683 AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQ 762 (820)
T ss_pred HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHH
Confidence 34355568888889999999999999997 466778765443331 12233333 456999
Q ss_pred HhcccCCCCCCCcceEEEEecCCcHHHHHHhhcCCCC
Q 000849 64 MLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLP 100 (1254)
Q Consensus 64 m~GRAGR~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 100 (1254)
-+||.=|...| .|.++|+-..-....|-+.+-...|
T Consensus 763 g~GRLIRs~~D-~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 763 AIGRTMRREDQ-KSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HhcccccCCCC-cEEEEEECCcccccHHHHHHHHhCC
Confidence 99999996555 7876666444222345443333333
No 490
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=88.47 E-value=3.1 Score=47.46 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=28.4
Q ss_pred ccccceeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEecCC
Q 000849 569 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 569 ~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lSAT 620 (1254)
.......+++|||++|.|... ....+.+..+..+.+..+|++|..
T Consensus 108 ~p~~g~~kV~iI~~ae~m~~~-------AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 108 TPQYGIAQVVIVDPADAINRA-------ACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred CcccCCcEEEEeccHhhhCHH-------HHHHHHHHhhCCCCCCeEEEEECC
Confidence 444567899999999988721 122233344444566777777754
No 491
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.42 E-value=3.1 Score=50.85 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=37.2
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHH
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~ 522 (1254)
..+..+++.||+|+|||+.++..+...+.+ +. +++|++ ..+-..|+..+...
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge--~~~y~s-~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACAN---KE--RAILFA-YEESRAQLLRNAYS 312 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEE-eeCCHHHHHHHHHH
Confidence 455677778999999999888777665544 44 788877 44556676666653
No 492
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.38 E-value=3.2 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=17.5
Q ss_pred ceeeeeeccCCCchHHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~i 488 (1254)
++.+++.||.|+|||..+...+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568888999999999885543
No 493
>PRK05595 replicative DNA helicase; Provisional
Probab=88.25 E-value=2.1 Score=51.83 Aligned_cols=144 Identities=19% Similarity=0.139 Sum_probs=75.8
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-ccccccc
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVETAMD 542 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~ 542 (1254)
+.....+++-|.||.|||..++-.+...... .+. +++|+..- .-..|+..++-.... ++....+ .|.....
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--~g~--~vl~fSlE-ms~~~l~~R~~a~~~---~v~~~~~~~~~l~~~ 269 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALR--EGK--SVAIFSLE-MSKEQLAYKLLCSEA---NVDMLRLRTGNLEDK 269 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHH--cCC--cEEEEecC-CCHHHHHHHHHHHhc---CCCHHHHhcCCCCHH
Confidence 4455566777999999998776554432222 233 67766542 234455555433222 2222111 1221111
Q ss_pred --------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccCCC-----ccHHHHHHHHHHHH
Q 000849 543 --------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-----GPVLEVIVARMRYI 604 (1254)
Q Consensus 543 --------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~-----g~~~e~~~~~l~~~ 604 (1254)
...+.+..+.|- |++.+....+++.. -..+++||||=.|.+...+ ...+..+...++.+
T Consensus 270 e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~---~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~l 346 (444)
T PRK05595 270 DWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI---EHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKAL 346 (444)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---hcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHH
Confidence 012233345553 33334333444322 1358999999999997422 23355566667766
Q ss_pred HhhcCCCcEEEEecCC
Q 000849 605 ASQVENKIRIVALSTS 620 (1254)
Q Consensus 605 ~~~~~~~~rii~lSAT 620 (1254)
.+. .++.++++|-.
T Consensus 347 Ake--~~i~vi~lsQL 360 (444)
T PRK05595 347 AKE--MECPVIALSQL 360 (444)
T ss_pred HHH--hCCeEEEeecc
Confidence 654 47888888755
No 494
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.20 E-value=2.3 Score=53.46 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=16.9
Q ss_pred ceeeeeeccCCCchHHHHHHH
Q 000849 467 IILVLQLAPTGSGKTICAEFA 487 (1254)
Q Consensus 467 ~~~viv~apTGsGKT~~~~l~ 487 (1254)
++.+++.||.|+|||.++...
T Consensus 40 ~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 456788899999999988544
No 495
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.18 E-value=2.1 Score=49.22 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=22.2
Q ss_pred eeeEEEecccccccCCCccHHHHHHHHHHHHHhhcCCCcEEEEec
Q 000849 574 QVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALS 618 (1254)
Q Consensus 574 ~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~~~~~~~~rii~lS 618 (1254)
..+++||||+|.+.... . ...++.+.+..+.+.++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~--~----~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLAD--A----QRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHH--H----HHHHHHHHHhcCCCceEEEEc
Confidence 46799999999884211 1 122333333335566766644
No 496
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.12 E-value=2.1 Score=55.49 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=90.3
Q ss_pred cceeeeeeccCCCchHHHHHHHHHHHHHhh---------------cCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCc
Q 000849 466 NIILVLQLAPTGSGKTICAEFAILRNHQRA---------------SETGVMRAVYIAPIEALAKQRYCDWERKFGKELGM 530 (1254)
Q Consensus 466 ~~~~viv~apTGsGKT~~~~l~il~~l~~~---------------~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~ 530 (1254)
....+++.-.-|.|||..-....+...... ...| -.++|+|. ++..|...++.+.... ++
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tg--aTLII~P~-aIl~QW~~EI~kH~~~--~l 447 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETG--ATLIICPN-AILMQWFEEIHKHISS--LL 447 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecC--ceEEECcH-HHHHHHHHHHHHhccc--cc
Confidence 334456667889999987655444332111 0123 68999998 5567888888875553 47
Q ss_pred EEEEecccccc---chhhcccCcEEEEcHhhHHH-HHHh--h--------hcc-----ccccee--eEEEecccccccCC
Q 000849 531 CVVELTVETAM---DLKLLEKGQIIISTPEKWDA-LSRR--W--------KQR-----KYVQQV--SLFIIDELHLIGGQ 589 (1254)
Q Consensus 531 ~v~~~~g~~~~---~~~~~~~~~Iiv~Tpe~l~~-l~~~--~--------~~~-----~~l~~v--~liIiDEaH~l~~~ 589 (1254)
+|..+.|-... ....+.++|||+||+..+.. +.-. . ..+ ..+-.+ =-|++|||+++...
T Consensus 448 Kv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess 527 (1394)
T KOG0298|consen 448 KVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS 527 (1394)
T ss_pred eEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch
Confidence 77777774332 23566789999999998722 2110 0 000 011111 23899999988752
Q ss_pred CccHHHHHHHHHHHHHhhcCCCcEEEEecCC----CCChHHHHHhhcCCC
Q 000849 590 GGPVLEVIVARMRYIASQVENKIRIVALSTS----LANAKDLGEWIGASS 635 (1254)
Q Consensus 590 ~g~~~e~~~~~l~~~~~~~~~~~rii~lSAT----l~~~~~l~~~l~~~~ 635 (1254)
. .....++.++. ....-+.|+| +.+.--+..||+..+
T Consensus 528 s-S~~a~M~~rL~--------~in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 528 S-SAAAEMVRRLH--------AINRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred H-HHHHHHHHHhh--------hhceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 2 22222333332 3445788888 334444556666654
No 497
>PHA00350 putative assembly protein
Probab=88.09 E-value=1.4 Score=51.32 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchHHHHHH-HHHHHHHh
Q 000849 468 ILVLQLAPTGSGKTICAEF-AILRNHQR 494 (1254)
Q Consensus 468 ~~viv~apTGsGKT~~~~l-~il~~l~~ 494 (1254)
++.++.|..|||||..+.. -++..+..
T Consensus 2 mI~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 2 MIYAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred ceEEEecCCCCchhHHHHHHHHHHHHHC
Confidence 4677889999999998875 35555544
No 498
>PRK09165 replicative DNA helicase; Provisional
Probab=87.95 E-value=2.5 Score=51.64 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=76.9
Q ss_pred CcceeeeeeccCCCchHHHHHHHHHHHHHhhc------------CCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEE
Q 000849 465 PNIILVLQLAPTGSGKTICAEFAILRNHQRAS------------ETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCV 532 (1254)
Q Consensus 465 ~~~~~viv~apTGsGKT~~~~l~il~~l~~~~------------~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v 532 (1254)
.....+++.|+||+|||..++-.+........ .+. +++|++ ...-..|+..++-.... ++..
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~--~vl~fS-lEMs~~ql~~R~la~~s---~v~~ 288 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGG--VVGFFS-LEMSAEQLATRILSEQS---EISS 288 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCC--eEEEEe-CcCCHHHHHHHHHHHhc---CCCH
Confidence 34455677799999999877655444332211 123 666664 33344566666543222 2221
Q ss_pred EE-eccccccc--------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccCCC-------c
Q 000849 533 VE-LTVETAMD--------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-------G 591 (1254)
Q Consensus 533 ~~-~~g~~~~~--------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~-------g 591 (1254)
.. ..|....+ ...+.+.++.|- |++.+....++... -..+++||||=.|.+.... .
T Consensus 289 ~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~---~~~~~lvvIDyLqli~~~~~~~~~~r~ 365 (497)
T PRK09165 289 SKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR---QHGLDLLVVDYLQLIRGSSKRSSDNRV 365 (497)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcchHhccCCCCCCCCchH
Confidence 11 12222111 112334456553 34444444444322 1358999999999886421 1
Q ss_pred cHHHHHHHHHHHHHhhcCCCcEEEEecCC
Q 000849 592 PVLEVIVARMRYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 592 ~~~e~~~~~l~~~~~~~~~~~rii~lSAT 620 (1254)
..+..+...++.+.+. .++.+|++|--
T Consensus 366 ~ev~~is~~LK~lAke--l~ipVi~lsQL 392 (497)
T PRK09165 366 QEISEITQGLKALAKE--LNIPVIALSQL 392 (497)
T ss_pred HHHHHHHHHHHHHHHH--hCCeEEEeecc
Confidence 2345566667776543 47888888763
No 499
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=87.82 E-value=0.35 Score=58.91 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecC----ccccCCCCc--c--ccCCHHHHHHHhcccCCCC
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGT----QVYNPEKGA--W--TELSPLDIMQMLGRAGRPQ 72 (1254)
Q Consensus 1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~----~~~~~~~~~--~--~~~~~~~~~qm~GRAGR~~ 72 (1254)
|+.++...|=+---+|.=-++|||+...-.+.+|...-|+-+- +.||...|. | .-+|-..=-|++|||||.|
T Consensus 614 Ls~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 614 LSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred cCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 3445555555555678888999999999999999999888543 678877762 1 1267777889999999975
Q ss_pred CCCcceEEEEecC
Q 000849 73 YDSYGEGIIITGH 85 (1254)
Q Consensus 73 ~~~~g~~~i~~~~ 85 (1254)
- |.+|=+..+
T Consensus 694 p---GHcYRLYSS 703 (1172)
T KOG0926|consen 694 P---GHCYRLYSS 703 (1172)
T ss_pred C---Cceeehhhh
Confidence 4 788877654
No 500
>PRK06321 replicative DNA helicase; Provisional
Probab=87.80 E-value=3 Score=50.53 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=74.0
Q ss_pred CCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhccccCcEEEEe-cccccc-
Q 000849 464 LPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVEL-TVETAM- 541 (1254)
Q Consensus 464 i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~~~~~~~v~~~-~g~~~~- 541 (1254)
+.....+++-|.+|.|||..++- +...+.. ..+. .++|.+. ..-..|+..++-.... ++....+ .|+...
T Consensus 223 l~~G~LiiiaarPgmGKTafal~-ia~~~a~-~~g~--~v~~fSL-EMs~~ql~~Rlla~~s---~v~~~~i~~~~l~~~ 294 (472)
T PRK06321 223 FSPSNLMILAARPAMGKTALALN-IAENFCF-QNRL--PVGIFSL-EMTVDQLIHRIICSRS---EVESKKISVGDLSGR 294 (472)
T ss_pred CCCCcEEEEEeCCCCChHHHHHH-HHHHHHH-hcCC--eEEEEec-cCCHHHHHHHHHHhhc---CCCHHHhhcCCCCHH
Confidence 34445566669999999987665 3333332 1233 5665532 2234455555433221 2221111 222211
Q ss_pred c-------hhhcccCcEEEE-----cHhhHHHHHHhhhcccccceeeEEEecccccccCC--------CccHHHHHHHHH
Q 000849 542 D-------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--------GGPVLEVIVARM 601 (1254)
Q Consensus 542 ~-------~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~--------~g~~~e~~~~~l 601 (1254)
+ ...+.+..+.|- |.+.+....++... -..+++||||=.+.+... +...+..+...+
T Consensus 295 e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~---~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~L 371 (472)
T PRK06321 295 DFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKE---SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRML 371 (472)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHH
Confidence 1 122334466664 44444444444322 235899999999998631 112344455666
Q ss_pred HHHHhhcCCCcEEEEecCC
Q 000849 602 RYIASQVENKIRIVALSTS 620 (1254)
Q Consensus 602 ~~~~~~~~~~~rii~lSAT 620 (1254)
+.+.+. -++.+|++|-.
T Consensus 372 K~lAke--l~vpVi~lsQL 388 (472)
T PRK06321 372 KNLARE--LNIPILCLSQL 388 (472)
T ss_pred HHHHHH--hCCcEEEEeec
Confidence 665543 46888888765
Done!