Query 000849
Match_columns 1254
No_of_seqs 651 out of 5610
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 16:58:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000849.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_619-623//hhsearch_pdb/000849hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 1.0 1 1 1934.3 121.2 1204 1-1247 388-1724(1724)
2 4f92_B U5 small nuclear ribonu 1.0 1 1 1002.6 79.8 792 402-1247 61-886 (1724)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 697.3 51.1 640 419-1140 23-693 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 696.3 57.1 643 419-1133 21-704 (720)
5 2va8_A SSO2462, SKI2-type heli 1.0 1 1 683.3 52.2 643 411-1134 18-714 (715)
6 2q0z_X Protein Pro2281; SEC63, 1.0 1 1 522.4 39.3 324 921-1252 10-333 (339)
7 3im1_A Protein SNU246, PRE-mRN 1.0 1 1 519.0 37.0 323 919-1249 4-328 (328)
8 2xgj_A ATP-dependent RNA helic 1.0 1 1 388.2 34.0 382 449-862 83-536 (1010)
9 3l9o_A ATP-dependent RNA helic 1.0 1 1 386.6 33.8 401 448-876 180-644 (1108)
10 4a4z_A Antiviral helicase SKI2 1.0 1 1 372.8 34.3 374 448-846 35-515 (997)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=1934.29 Aligned_cols=1204 Identities=62% Similarity=1.046 Sum_probs=1153.8
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99778999999982799739995302452118454399991570015999962008998999974004999878766199
Q 000849 1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 80 (1254)
Q Consensus 1 l~~~~R~~vE~~f~~g~i~vl~~T~tla~Gvnlpa~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~ 80 (1254)
|++++|..||++|++|.++|||||+|||||||+||++|||+||++|||+.|++.++++.+|+||+|||||+|+|+.|+++
T Consensus 388 L~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~i 467 (1724)
T 4f92_B 388 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGI 467 (1724)
T ss_dssp SCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 99999999999987799749998426671388887069982887704767875638999998764012688888764799
Q ss_pred EEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCC--CCCHH
Q ss_conf 9966870789997403888760357787899999999815533847899998601035762169755589977--67524
Q 000849 81 IITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPE--VLDIT 158 (1254)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~--~~~~~ 158 (1254)
++++.++..+|.++++++.||||+|...+.++||++|++|++.+.+++.+|+++||+|+|+.+||.+|++..+ ..|+.
T Consensus 468 i~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~ 547 (1724)
T 4f92_B 468 LITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPL 547 (1724)
T ss_dssp EEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTT
T ss_pred EEECCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHH
T ss_conf 98350259999999749985102033107889999998702478999999996437887753274654367100123637
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEC----------------------------------------------
Q ss_conf 7787789999999996334864345766745644----------------------------------------------
Q 000849 159 LGERITDLIHTAANVLDRNNLVKYGRKSGYFQSE---------------------------------------------- 192 (1254)
Q Consensus 159 ~~~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t---------------------------------------------- 192 (1254)
+.+++.+++..++..|++++||.++++++.+.+|
T Consensus 548 l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~ 627 (1724)
T 4f92_B 548 LDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNIT 627 (1724)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCC
T ss_conf 89999999999999998879901406778643444879999836899999999863588899999999975775216677
Q ss_pred ---CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHCCCHHHH
Q ss_conf ---02899999841699667788889148999999998715655676321228-----6889999999999951939999
Q 000849 193 ---KIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQLA 264 (1254)
Q Consensus 193 ---~e~~~l~~l~~~~~~~i~~~~~~~~~Kv~~Llq~~i~~~~l~~~~l~~d~-----~a~ri~~a~~ei~~~~~~~~~~ 264 (1254)
+|+.+|.+|++++|+|+++++++++.|+|+|||+|||+..+++|++.+|+ ||+||+||++|++..+||+..+
T Consensus 628 ~R~~E~~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~ 707 (1724)
T 4f92_B 628 VREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLT 707 (1724)
T ss_dssp CCGGGHHHHHHHHHHSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 07789999999982399776887888589999999999769986654289899999999999999999999985989999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC--------------------CC-----------------
Q ss_conf 99999999998045889974333699998999998815998--------------------88-----------------
Q 000849 265 EKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF--------------------LG----------------- 307 (1254)
Q Consensus 265 ~~~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~--------------------~g----------------- 307 (1254)
..+++|+||+++|+|++++||+||++||++.+++++++|++ .|
T Consensus 708 ~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~ 787 (1724)
T 4f92_B 708 DKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSV 787 (1724)
T ss_dssp HHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999998288998883306899999999999826999999972898899999779457999999999789853899
Q ss_pred --CCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCC---
Q ss_conf --877654341799996312333433696108999999479995899876421244678651899996289999998---
Q 000849 308 --KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ--- 382 (1254)
Q Consensus 308 --~pit~~~~~i~~~~~~~~~w~~~~~g~~~~f~~~ved~~~~~il~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~--- 382 (1254)
+|||++++++++.++|+|.|++++||..|.||+||||.+|+.|+|++++.+++++..+++.++|++|+++|+||+
T Consensus 788 ~~~p~~~~~~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i 867 (1724)
T 4f92_B 788 HLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFI 867 (1724)
T ss_dssp EEEESSSSEEEEEEEEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEE
T ss_pred EEEECCCCEEEEEEEEEECCCCCHHHCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEE
T ss_conf 99716775599999986446355322577305999999469883888889986300267745999999888899981899
Q ss_pred -------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC-CCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf -------------------634999999998777888544346588048888102-777685789998887427734789
Q 000849 383 -------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQN-YKLFNPIQTQVFAVLYNTEDNVLV 442 (1254)
Q Consensus 383 -------------------~l~lp~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~-~~~~~~iQ~~~~~~~~~~~~n~lv 442 (1254)
++++|++++++|+++|++|+|++++.++.++.+|.. |.+|||+|+++|+.++++++|+++
T Consensus 868 ~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv 947 (1724)
T 4f92_B 868 RVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFV 947 (1724)
T ss_dssp EEEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEE
T ss_pred EEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 99974010777346542423447888899874345887885544688899999726789997999999999668996899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 99995222578858899986088532444314699752799999999998721679972899976528899999999998
Q 000849 443 AALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWER 522 (1254)
Q Consensus 443 ~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~viii~P~~aLa~q~~~~~~~ 522 (1254)
+ ||||||||+++++||++.+.+ .+++ +++|++|+++|+.|++++|.+
T Consensus 948 ~------------------------------APTGSGKTliaelail~~l~~-~~~~--kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 948 G------------------------------APTGSGKTICAEFAILRMLLQ-SSEG--RCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp E------------------------------CCTTSCCHHHHHHHHHHHHHH-CTTC--CEEEECSCHHHHHHHHHHHHH
T ss_pred E------------------------------ECCCCCCHHHHHHHHHHHHHH-CCCC--EEEEECCHHHHHHHHHHHHHH
T ss_conf 9------------------------------379887469999999999985-8998--799986829999999999999
Q ss_pred HHCCCCCCEEEEECCCCCCCHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 52113692999824466313210036759997676579998711002543215489851311135989418999999999
Q 000849 523 KFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602 (1254)
Q Consensus 523 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~e~il~rl~ 602 (1254)
.|+...|++|+.++|+...+.+...+++|+|+|||+|+.++++|..+..+++++++|+||+|++++++|..+|.++++++
T Consensus 995 ~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~ 1074 (1724)
T 4f92_B 995 KFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1074 (1724)
T ss_dssp HHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHH
T ss_pred HHCHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHH
T ss_conf 84422097899997997812111589999998879999998384446413523189701011047878763999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 98741499808999248999967898864679870672699985436379993025788489998527789999996641
Q 000849 603 YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAK 682 (1254)
Q Consensus 603 ~~~~~~~~~~riI~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 682 (1254)
.+..+.+.+.|+|++|||++|++++++|++.....+++|.++.||+|++.++.++...+...++..+.++.+..+.+. .
T Consensus 1075 ~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~ 1153 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-S 1153 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-C
T ss_pred HHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHH-C
T ss_conf 998636888639999288899999999867998775894888888870899980367771666653201499999985-3
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCHHHHHHHCCHHHHHHHHHCCCEEECCCCCHHHHHHHH
Q ss_conf 69981899259456999999999986006865321224683403357731276999999601311104899987799999
Q 000849 683 NEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVS 762 (1254)
Q Consensus 683 ~~~~~lVF~~sr~~~~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~L~~~l~~~i~~~h~~l~~~~R~~v~ 762 (1254)
.++++||||++|+.|+.+|..+...+........ ++....+++......+.|..|.+++..||++|||||++.+|..++
T Consensus 1154 ~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1154 PKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR-FLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTT-TBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHH-HHCCCHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHH
T ss_conf 7997215578889999999999988762643022-201339999999864142889998747889977999999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCEEE--C------C----CCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 9985599119990764323348754032--3------5----53479999999660028999999705999913792899
Q 000849 763 TLFEAGKIKVCVMSSSMCWEVPLTAHLA--T------G----RKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEY 830 (1254)
Q Consensus 763 ~~F~~g~~~VLVaT~~l~~Gidip~~~V--~------~----~~~~s~~~~~Q~~GRaGR~g~d~~G~~iil~~~~~~~~ 830 (1254)
+.|++|.++|||||+++++|||+|++.| . + ..+++..+|.||+|||||+|.|..|.|++++++.++++
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~ 1312 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF 1312 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHH
T ss_pred HHHHCCCCEEEEECHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 99977998499988699757898861899956711367555667799999997615135788788628999965457789
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9985008964124520368999999986096679999999987731---3465877665788892008899999999999
Q 000849 831 YKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTI 907 (1254)
Q Consensus 831 ~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~tf---rl~~nP~~Y~~~~~~~~~~~~~l~~~i~~~i 907 (1254)
|++++++++|+||+|...+.++++++|+.+++.+++++++|++||| |+.+||+||++.+.+..++++++++++++++
T Consensus 1313 ~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l 1392 (1724)
T 4f92_B 1313 FKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTL 1392 (1724)
T ss_dssp HHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99973799703545441117899999985434889999999973079998730732025665335567899999999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99688899506099987767156789851488442999982045757688899998384010159999016999999982
Q 000849 908 SDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLIN 987 (1254)
Q Consensus 908 ~~L~~~~~i~~~~~~~~~~t~lG~i~s~y~I~~~T~~~~~~~l~~~~~~~~il~ils~a~Ef~~i~~R~~e~~~l~~l~~ 987 (1254)
+.|+++|||+.++++.+.||++|+++|+|||++.|++.|..++++.++..++|+++|.|.||+++++|++|+..+.+|++
T Consensus 1393 ~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~ 1472 (1724)
T 4f92_B 1393 SDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQ 1472 (1724)
T ss_dssp HHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHH
T ss_pred HHHHHCCCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99998889998699878666899999997789999999998544369888899884078454566436068999999986
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 16843599999993889999999986298888633885999999999999999999971495999999999999997214
Q 000849 988 HQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1067 (1254)
Q Consensus 988 ~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~l~~D~~~il~~~~rll~a~idi~~~~~~~~~~~~~~~l~q~i~q~~ 1067 (1254)
.+|+++++..+.+++.|+++|||||++|.++|.+|.+|++.|++++.|+++||+|+|...||+++++++|+|+|||.||+
T Consensus 1473 ~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~~~~~~D~~~i~~~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~ 1552 (1724)
T 4f92_B 1473 KVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAM 1552 (1724)
T ss_dssp HSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 38977774445788999999999997788677679999999999999999999999997898899999999999999478
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 79997634579999998999880999972498898319999999882499266999999963399148999985164322
Q 000849 1068 WEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVR 1147 (1254)
Q Consensus 1068 w~~~~~L~Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~i~~~v~~~~~i~ 1147 (1254)
|+++++|+|||||+...+++|.++| ++++.|++++++++++++|+++++++.+++++|++||++++++++.+.+.+.
T Consensus 1553 w~~~~~L~qip~i~~~~ar~l~~~g---i~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~ 1629 (1724)
T 4f92_B 1553 WSKDSYLKQLPHFTSEHIKRCTDKG---VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIR 1629 (1724)
T ss_dssp CTTSCGGGGSTTCCHHHHHHHHHHT---CCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSCCEEEEEEEETSSSCC
T ss_pred CCCCCCEECCCCCCHHHHHHHHHCC---CCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf 8677687347998989999999779---9999999858999999997799689999999998689638999980573134
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEEEEEECCCCCEEEE
Q ss_conf 38862899999996389987768601489999875449999996899949999896532343599999830689932799
Q 000849 1148 AGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYT 1227 (1254)
Q Consensus 1148 ~~~~~~~i~v~l~r~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~~~~~~~~~~~~~~f~~p~~~g~~~~~ 1227 (1254)
. |+.+++.|+++|++ +..+.++||+||+.|.|+||++|||.++|+|++++|+++.+...+++.|.+| .+|.++++
T Consensus 1630 ~-~~~~~~~v~~~~~~---~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~~~~~~~l~f~~p-~~g~~~~~ 1704 (1724)
T 4f92_B 1630 S-GGPVVVLVQLEREE---EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYT 1704 (1724)
T ss_dssp T-TSEEEEEEEEEESS---CCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECC-SSSCEEEE
T ss_pred C-CCEEEEEEEEEECC---CCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEC-CCCCEEEE
T ss_conf 7-97599999998547---7787065678998872277999998899949999988147786389999937-99954699
Q ss_pred EEEEECCCCCCCEEEEEEEE
Q ss_conf 99993775555708999999
Q 000849 1228 LDFMCDSYMGCDQEYSFTVD 1247 (1254)
Q Consensus 1228 v~~~sD~yiG~D~~~~~~l~ 1247 (1254)
+|++||||+|||||++|.++
T Consensus 1705 ~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1705 LYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp EEEEESSCSSCCEEEEEEEC
T ss_pred EEEEECCCCCCCEEEEEECC
T ss_conf 99983573455636887459
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=1002.60 Aligned_cols=792 Identities=27% Similarity=0.468 Sum_probs=701.0
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHH
Q ss_conf 44346588048888102777685789998887427734789999952225788588999860885324443146997527
Q 000849 402 LPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKT 481 (1254)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~iQ~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT 481 (1254)
.|++.|. ..++..|++|++||++|+++++.++++++|++++ ||||||||
T Consensus 61 ~~i~~Lp-~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~------------------------------APTGsGKT 109 (1724)
T 4f92_B 61 LPVEKLP-KYAQAGFEGFKTLNRIQSKLYRAALETDENLLLC------------------------------APTGAGKT 109 (1724)
T ss_dssp CBTTTSC-GGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEE------------------------------CCTTSCCH
T ss_pred CCHHHCC-HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEE------------------------------ECCCCHHH
T ss_conf 5257659-9888744789999999999999997589939999------------------------------68814699
Q ss_pred HHHHHHHHHHHHHHCC------CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCEEEEC
Q ss_conf 9999999999872167------9972899976528899999999998521136929998244663132100367599976
Q 000849 482 ICAEFAILRNHQRASE------TGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIIST 555 (1254)
Q Consensus 482 ~~~~l~il~~l~~~~~------~~~~~viii~P~~aLa~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~T 555 (1254)
++|+++|++.+.+... ..+.+++|++|++||+.|++++|.+.++.. |++|..++||.....+....++|+|||
T Consensus 110 lva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~~~~~~IlVtT 188 (1724)
T 4f92_B 110 NVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEEISATQIIVCT 188 (1724)
T ss_dssp HHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTTGGGCSEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCEEEEC
T ss_conf 9999999999986234344445799889998997999999999999777547-988999979988871435899999988
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 76579998711002543215489851311135989418999999999987414998089992489999678988646798
Q 000849 556 PEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASS 635 (1254)
Q Consensus 556 pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~e~il~rl~~~~~~~~~~~riI~lSATl~~~~~~~~~l~~~~ 635 (1254)
||+|+.+++++.....++.++++|+||+|+++++||+.+|.+++|+++.....+.++|+|++|||++|.+++++||+..+
T Consensus 189 pEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~ 268 (1724)
T 4f92_B 189 PEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 268 (1724)
T ss_dssp HHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCH
T ss_pred HHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCC
T ss_conf 79999997588530445475889995554429956799999999999999737999809999545699999999867888
Q ss_pred -CEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -7067269998543637999302578848999852778999999664169981899259456999999999986006865
Q 000849 636 -HGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQ 714 (1254)
Q Consensus 636 -~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~sr~~~~~la~~L~~~~~~~~~~ 714 (1254)
.+++.|..++||+|++.++.+............+...++..+.+. ..++++||||+||+.|+.+|..|...+......
T Consensus 269 ~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~ 347 (1724)
T 4f92_B 269 AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTL 347 (1724)
T ss_dssp HHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTST
T ss_pred CCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 8886997999766731799965687541456677889999999997-569968998788899999999999987645521
Q ss_pred CCCCCCCC---HHCHHHHHHHCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEE-
Q ss_conf 32122468---34033577312769999996013111048999877999999985599119990764323348754032-
Q 000849 715 KSAFLLCS---AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLA- 790 (1254)
Q Consensus 715 ~~~~l~~~---~~~l~~~~~~~~~~~L~~~l~~~i~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gidip~~~V- 790 (1254)
.. +.... .+.+........+..|.+++..||++|||||++.+|..+++.|++|.++|||||+++++|||+|++.|
T Consensus 348 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vV 426 (1724)
T 4f92_B 348 GL-FLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVI 426 (1724)
T ss_dssp TC-CSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEE
T ss_pred HH-HCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCEEE
T ss_conf 22-13333057888776640244488999864577887599999999999999877997499984266713888870699
Q ss_pred -C----------CCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -3----------55347999999966002899999970599991379289999850089641245203689999999860
Q 000849 791 -T----------GRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVA 859 (1254)
Q Consensus 791 -~----------~~~~~s~~~~~Q~~GRaGR~g~d~~G~~iil~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~ 859 (1254)
. +..+++..+|.||+|||||+|+|..|.++++++.++..+|..+++.+.|+||++...+.+++++||+.
T Consensus 427 I~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~ 506 (1724)
T 4f92_B 427 IKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVL 506 (1724)
T ss_dssp EECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHH
T ss_pred EECCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHH
T ss_conf 82887704767875638999998764012688888764799983502599999997499851020331078899999987
Q ss_pred CCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHCCCCEECCCC-CCCCCCHHHH
Q ss_conf 96679999999987731---34658776657888---92008899999999999996888995060999-8776715678
Q 000849 860 GVIENKQDAVDYLTWTF---RLTQNPNYYNLQGV---SHRHLSDHLSELVENTISDLEATRSIIMEDDM-DLCPSNYGMI 932 (1254)
Q Consensus 860 ~~i~~~~~~~~~l~~tf---rl~~nP~~Y~~~~~---~~~~~~~~l~~~i~~~i~~L~~~~~i~~~~~~-~~~~t~lG~i 932 (1254)
|++.+.+++++|+++|| |+.+||.+|++... .++.+.+.+.+++.+++..|.++++|..++++ .+.+|++|++
T Consensus 507 g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~ 586 (1724)
T 4f92_B 507 GNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRI 586 (1724)
T ss_dssp TSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHH
T ss_pred HHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
T ss_conf 02478999999996437887753274654367100123637899999999999999988799014067786434448799
Q ss_pred HHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98514884429999820457576888999983840101599990169999999821684359999999388999999998
Q 000849 933 ASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAH 1012 (1254)
Q Consensus 933 ~s~y~I~~~T~~~~~~~l~~~~~~~~il~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~ 1012 (1254)
||+|||+++|+..|...+++.++..+++.++|.|.||..+++|++|...+.++...+|+++++ .+.+++.|+++|||+|
T Consensus 587 ~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~~~~~~~~~-~~~~~~~Kv~~Llq~~ 665 (1724)
T 4f92_B 587 ASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKE-SIEEPSAKINVLLQAF 665 (1724)
T ss_dssp HHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHHHSSSCCCS-CCSSHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHH
T ss_conf 998368999999998635888999999999757752166770778999999998239977688-7888589999999999
Q ss_pred HCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 6298888-633885999999999999999999971495999999999999997214799976345799999989998809
Q 000849 1013 FSARHME-GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQEN 1091 (1254)
Q Consensus 1013 l~r~~l~-~~l~~D~~~il~~~~rll~a~idi~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~ 1091 (1254)
++|.+++ .++.+|+.+|.+++.||++|+++++..+||...+..++.|++|+.+++|++.+||.|+|+++...++++.++
T Consensus 666 i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~ 745 (1724)
T 4f92_B 666 ISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKK 745 (1724)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHTS
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHC
T ss_conf 76998665428989999999999999999999998598999999999999998288998883306899999999999826
Q ss_pred CCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCC
Q ss_conf 99972498898319999999882499266999999963399148999985164322388628999999963899877686
Q 000849 1092 PGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGP 1171 (1254)
Q Consensus 1092 ~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~i~~~v~~~~~i~~~~~~~~i~v~l~r~~~~~~~~~~ 1171 (1254)
+ + ++.++.+++..+++.+++ +++.++.+.+.+++||++++++++++ ++ .+...+.++++.++.| +..
T Consensus 746 ~---~-~~~~l~~~~~~~l~~~~~-~~~~g~~i~~~~~~~P~~~~~~~~~p---~~--~~~~~~~~~~~~~~~w---~~~ 812 (1724)
T 4f92_B 746 N---F-PFERLYDLNHNEIGELIR-MPKMGKTIHKYVHLFPKLELSVHLQP---IT--RSTLKVELTITPDFQW---DEK 812 (1724)
T ss_dssp S---C-CGGGGGGCCHHHHHHHHT-CSTTHHHHHHHHTTSCCEEEEEEEEE---SS--SSEEEEEEEEEECSCC---CTT
T ss_pred C---C-CHHHHHHCCHHHHHHHHC-CCHHHHHHHHHHHHCCCCEEEEEEEE---CC--CCEEEEEEEEEECCCC---CHH
T ss_conf 9---9-999997289889999977-94579999999997898538999971---67--7559999998644635---532
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCC---CEEEEEEEEECC-CCCEEEEEEEEECCCCCCCEEEEEEEE
Q ss_conf 0148999987544999999689994999989653234---359999983068-993279999993775555708999999
Q 000849 1172 VYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRK---SRAKLDFAAPVE-GGKKTYTLDFMCDSYMGCDQEYSFTVD 1247 (1254)
Q Consensus 1172 ~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~~~~~~~~---~~~~~~f~~p~~-~g~~~~~v~~~sD~yiG~D~~~~~~l~ 1247 (1254)
+| .+.|.||++|+|.+++.|++..++.+.+. ....+.|.+|.. |...+|.+.++||.|+|++.+.++.++
T Consensus 813 ~h------~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~~~~~~ 886 (1724)
T 4f92_B 813 VH------GSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFR 886 (1724)
T ss_dssp TT------TTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEEEEECT
T ss_pred HC------CCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEECCC
T ss_conf 25------773059999994698838888899863002677459999998888999818999997401077734654242
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=697.27 Aligned_cols=640 Identities=23% Similarity=0.325 Sum_probs=516.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 77768578999888742773478999995222578858899986088532444314699752799999999998721679
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~iQ~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|..|+++|.++++.+.. +.|++++ ||||||||+++.+++++.+.. +
T Consensus 23 ~~~l~~~Q~~~i~~i~~-~~~~lv~------------------------------apTGsGKT~~~~l~il~~~~~---~ 68 (702)
T 2p6r_A 23 IEELFPPQAEAVEKVFS-GKNLLLA------------------------------MPTAAGKTLLAEMAMVREAIK---G 68 (702)
T ss_dssp --CCCCCCHHHHHHHTT-CSCEEEE------------------------------CSSHHHHHHHHHHHHHHHHHT---T
T ss_pred CCCCCHHHHHHHHHHHC-CCCEEEE------------------------------CCCCCHHHHHHHHHHHHHHHH---C
T ss_conf 98899999999999838-9968998------------------------------689617999999999999986---8
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 97289997652889999999999852113692999824466313210036759997676579998711002543215489
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 578 (1254)
Q Consensus 499 ~~~~viii~P~~aLa~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~li 578 (1254)
+ +++|++|+++|+.|++++|+ .+... |++++.++|+.....+....++|+|+|||+|+.++++ ....+++++++
T Consensus 69 ~--~~l~i~P~r~La~q~~~~~~-~~~~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~v 142 (702)
T 2p6r_A 69 G--KSLYVVPLRALAGEKYESFK-KWEKI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCL 142 (702)
T ss_dssp C--CEEEEESSHHHHHHHHHHHT-TTTTT-TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEE
T ss_pred C--CEEEEECCHHHHHHHHHHHH-HHHHC-CCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHC--CHHHHHHCCEE
T ss_conf 9--59999370999999999999-77704-9889998388776643526999999898999999975--75577625989
Q ss_pred EECCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEC
Q ss_conf 8513111359-894189999999999874149980899924899996789886467987067269998543637999302
Q 000849 579 IIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV 657 (1254)
Q Consensus 579 ViDEaH~l~~-~~g~~~e~il~rl~~~~~~~~~~~riI~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~ 657 (1254)
|+||+|.+.+ .||..++.++++++.. .++.|+|++|||++|.+++++|++... +....||+|+...+...
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~----~~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~ 213 (702)
T 2p6r_A 143 VVDEIHLLDSEKRGATLEILVTKMRRM----NKALRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCE 213 (702)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHH----CTTCEEEEEECCCTTHHHHHHHTTCEE-----EECCCCSSCEEEEEECS
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEECCCCCCHHHHHHHHCCCC-----CCCCCCCCCCEEEEEEC
T ss_conf 885025547877652799999999843----867659997887689999999848972-----36888776646888617
Q ss_pred CCCCHHHHHHH--HCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCHHHHHHHCCH
Q ss_conf 57884899985--2778999999664169981899259456999999999986006865321224683403357731276
Q 000849 658 DITNFEARMKA--MTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQE 735 (1254)
Q Consensus 658 ~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~lVF~~sr~~~~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 735 (1254)
....+...... ..-.....+.+.+..++++||||++++.++.++..|............ ..+.+........+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~-----~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 214 GTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG-----LEKAILEENEGEMS 288 (702)
T ss_dssp SEEEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS-----HHHHHHTTCCSHHH
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHCCCCCC
T ss_conf 8231057630144454699999999966997899838878999999999999876469588-----99999862455321
Q ss_pred HHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CEEE-C----C---CCCCCHHHHHHHHC
Q ss_conf 999999601311104899987799999998559911999076432334875-4032-3----5---53479999999660
Q 000849 736 EMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-T----G---RKMLILTTLLQMMG 806 (1254)
Q Consensus 736 ~~L~~~l~~~i~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gidip-~~~V-~----~---~~~~s~~~~~Q~~G 806 (1254)
..+.++++.++++|||+|+..+|..+++.|++|.++|||||+++++|+|+| ..+| + + ..+.|..+|.||+|
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~G 368 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAG 368 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHT
T ss_pred HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHH
T ss_conf 99999984692886699999999999999987998499978388665788733999847623078777589999999843
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHH-HHHHH-CCCCCCCCCCCH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 028999999705999913792899-99850-089641245203--68999999986096679999999987731346587
Q 000849 807 HAGRPLLDNSEKCVILCHAPHKEY-YKKFL-YEAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNP 882 (1254)
Q Consensus 807 RaGR~g~d~~G~~iil~~~~~~~~-~~~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~tfrl~~nP 882 (1254)
||||.|.+..|.|+++++..+.+. +++++ ..+.|++|.+.. .+.++++++++.|.+.+.+|+.+|+++||-..+..
T Consensus 369 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~ 448 (702)
T 2p6r_A 369 RAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE 448 (702)
T ss_dssp TBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC
T ss_pred HCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 32799999873699995573189999999608998846516860558999999997177888999999998506777501
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC-CCHHHHHH
Q ss_conf 76657888920088999999999999968889950609998776715678985148844299998204575-76888999
Q 000849 883 NYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSK-TKMKGLLE 961 (1254)
Q Consensus 883 ~~Y~~~~~~~~~~~~~l~~~i~~~i~~L~~~~~i~~~~~~~~~~t~lG~i~s~y~I~~~T~~~~~~~l~~~-~~~~~il~ 961 (1254)
.++.+.++++++.|.+.|+|..+ +.+.+|++|+++|+||++|.++++|...++.. .+..+++.
T Consensus 449 --------------~~~~~~~~~al~~L~~~g~i~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (702)
T 2p6r_A 449 --------------ISLSYELERVVRQLENWGMVVEA--AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALH 512 (702)
T ss_dssp --------------CCCHHHHHHHHHHHHHTTSEEES--SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHCCCEEEC--CEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf --------------78999999999999988594289--90664869999999857898999999974304687899999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCC-------HHHHHHHHHHHHHCCCCCCC-----C-HHHHHH
Q ss_conf 98384010159999016999999982-1684359999999-------38899999999862988886-----3-388599
Q 000849 962 VLASASEYAQLPIRPGEEELVRRLIN-HQRFSFANPKCTD-------PHVKANALLQAHFSARHMEG-----N-LKLDQE 1027 (1254)
Q Consensus 962 ils~a~Ef~~i~~R~~e~~~l~~l~~-~~~~~~~~~~~~~-------~~~K~~lLlqa~l~r~~l~~-----~-l~~D~~ 1027 (1254)
++|.+.||..+++|++|+.....+.+ ..++ .+.+.+.. ++.|+++|||+|++|.+++. . +.+|++
T Consensus 513 ~i~~~~e~~~i~~r~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~ 591 (702)
T 2p6r_A 513 LICRTPDMERLTVRKTDSWVEEEAFRLRKEL-SYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLR 591 (702)
T ss_dssp HHHHSTTSCCCCCCTTTHHHHHHHHHHGGGS-SCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHH
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
T ss_conf 9537744445777876599999998654666-678630000123456669999999999827986889988577677599
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCH
Q ss_conf 99999999999999999714959999999999999972147999763457999999899988099997249889831999
Q 000849 1028 KVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMED 1107 (1254)
Q Consensus 1028 ~il~~~~rll~a~idi~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~ 1107 (1254)
++++++.|+++||++||...||. .+++|+|||.||+|++.+||+|+|||+..++++|+++| ++++.++++++
T Consensus 592 ~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g---~~s~~~l~~~~- 663 (702)
T 2p6r_A 592 RIVETAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAG---IRNAEDIVRHR- 663 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTT---CCSHHHHHHTH-
T ss_pred HHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHCC---CCCHHHHHHHH-
T ss_conf 99999999999999999973999----99999999980898222756158999999999999769---99899998615-
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 999988249926699999996339914899998
Q 000849 1108 DERRELLQMSDVQLLDIARFCNRFPNIDMSYKV 1140 (1254)
Q Consensus 1108 ~~~~~ll~~~~~~~~~i~~~~~~~P~i~i~~~v 1140 (1254)
+++..+++ +++++.+.+.+. +|.+++++.-
T Consensus 664 ~~l~~ll~--~~~~~~i~~~~~-~p~~~~~~~~ 693 (702)
T 2p6r_A 664 EKVASLIG--RGIAERVVEGIS-VKSLNPESAA 693 (702)
T ss_dssp HHHHHHHC--HHHHHHHHHHHH-HHC-------
T ss_pred HHHHHHHC--HHHHHHHHHHCC-CCCCCCCHHH
T ss_conf 89999858--457999999568-8856810456
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=696.34 Aligned_cols=643 Identities=22% Similarity=0.292 Sum_probs=521.4
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 77768578999888742773478999995222578858899986088532444314699752799999999998721679
Q 000849 419 YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASET 498 (1254)
Q Consensus 419 ~~~~~~iQ~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~ 498 (1254)
|..|+++|.++++.++..++|++++ ||||||||+++.+++++.+.. .+
T Consensus 21 ~~~l~~~Q~~~i~~~~~~~~~~lv~------------------------------apTGsGKT~~~~l~il~~~~~--~~ 68 (720)
T 2zj8_A 21 IESFYPPQAEALKSGILEGKNALIS------------------------------IPTASGKTLIAEIAMVHRILT--QG 68 (720)
T ss_dssp CCBCCHHHHHHHTTTGGGTCEEEEE------------------------------CCGGGCHHHHHHHHHHHHHHH--HC
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEE------------------------------CCCCCHHHHHHHHHHHHHHHH--CC
T ss_conf 9889999999999985579948998------------------------------699637999999999999986--79
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 97289997652889999999999852113692999824466313210036759997676579998711002543215489
Q 000849 499 GVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 578 (1254)
Q Consensus 499 ~~~~viii~P~~aLa~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~li 578 (1254)
+ +++|++|+++|+.|++++|+ .+... |++++.++|+...+.+....++|+|+|||+|+.+++. ....+++++++
T Consensus 69 ~--~~l~i~P~raLa~q~~~~~~-~l~~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~v 142 (720)
T 2zj8_A 69 G--KAVYIVPLKALAEEKFQEFQ-DWEKI-GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKIL 142 (720)
T ss_dssp S--EEEEECSSGGGHHHHHHHTG-GGGGG-TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEE
T ss_pred C--EEEEECCCHHHHHHHHHHHH-HHHHC-CCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHC--CHHHHHCCCEE
T ss_conf 9--89998596999999999999-88735-9779996389776412147999999888999999975--71466527989
Q ss_pred EECCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEC
Q ss_conf 8513111359-894189999999999874149980899924899996789886467987067269998543637999302
Q 000849 579 IIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGV 657 (1254)
Q Consensus 579 ViDEaH~l~~-~~g~~~e~il~rl~~~~~~~~~~~riI~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~ 657 (1254)
|+||+|.+.+ +||..++.++.+++ .+.|+|++|||++|.+++++|++... +....||+|+...+...
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~-------~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~rp~~l~~~~~~~ 210 (720)
T 2zj8_A 143 VADEIHLIGSRDRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQ 210 (720)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHHB-------TTBEEEEEECCCSCHHHHHHHTTEEE-----EECCCCSSEEEEEEEET
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHH-------CCCEEEEECCCCCCHHHHHHHHCCCC-----CCCCCCCCCCEEEEEEC
T ss_conf 9989855678764479999999864-------07769997588689999999829860-----37898887636889757
Q ss_pred CCCCHHHHHHHHCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCHHHHHHH----C
Q ss_conf 578848999852778999999664169981899259456999999999986006865321224683403357731----2
Q 000849 658 DITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSI----I 733 (1254)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lVF~~sr~~~~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~----~ 733 (1254)
....+..............+.+.+..++++||||++++.|+.++..|.......... .....+...... .
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~------~~~~~~~~~~~~i~~~~ 284 (720)
T 2zj8_A 211 GFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTK------PEIRALNELADSLEENP 284 (720)
T ss_dssp TEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCH------HHHHHHHHHHHTSCSCH
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHCCC
T ss_conf 813116532000169999999998679988999658799999999999999874590------66899999999875166
Q ss_pred CHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CEEE-C----CC----CCCCHHHHHH
Q ss_conf 76999999601311104899987799999998559911999076432334875-4032-3----55----3479999999
Q 000849 734 QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-T----GR----KMLILTTLLQ 803 (1254)
Q Consensus 734 ~~~~L~~~l~~~i~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gidip-~~~V-~----~~----~~~s~~~~~Q 803 (1254)
.+..|.+++..++++|||+|+..+|..+++.|++|.++|||||+++++|+|+| ..+| + ++ .|.+..+|.|
T Consensus 285 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Q 364 (720)
T 2zj8_A 285 TNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQ 364 (720)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHH
T ss_pred CHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCCEEECCCCCCCCCHHHHHH
T ss_conf 50889999851946324899999999999999779975999881866628888528998487240688876089999999
Q ss_pred HHCCCCCCCCCCCCEEEEECCCCCHHH-HHHHH-CCCCCCCCCCCH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 660028999999705999913792899-99850-089641245203--68999999986096679999999987731346
Q 000849 804 MMGHAGRPLLDNSEKCVILCHAPHKEY-YKKFL-YEAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAVDYLTWTFRLT 879 (1254)
Q Consensus 804 ~~GRaGR~g~d~~G~~iil~~~~~~~~-~~~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~tfrl~ 879 (1254)
|+|||||.|.+..|.|++++++.+... +++++ .++.|++|.+.. .+.++++++++.+.+.+.+|+.+|+++||-..
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~ 444 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY 444 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHH
T ss_pred HHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHH
T ss_conf 87544899888876699996671099999999618998717656860439999999997177889999999998276877
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC---CCH
Q ss_conf 58776657888920088999999999999968889950609998776715678985148844299998204575---768
Q 000849 880 QNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSK---TKM 956 (1254)
Q Consensus 880 ~nP~~Y~~~~~~~~~~~~~l~~~i~~~i~~L~~~~~i~~~~~~~~~~t~lG~i~s~y~I~~~T~~~~~~~l~~~---~~~ 956 (1254)
+.+. ++++.+.++++++.|.+.|+|..++++.+.+|++|+++|+||++|.+++.|..+++.. .+.
T Consensus 445 ~~~~------------~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (720)
T 2zj8_A 445 QRKD------------TYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNP 512 (720)
T ss_dssp HCSC------------CHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCH
T ss_pred HCCC------------HHHHHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 4364------------5789999999999999887935778982755769999999738999999999998764258988
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH------CCCCCCCCCCCC-------HHHHHHHHHHHHHCCCCCCC---
Q ss_conf 88999983840101599990169999999821------684359999999-------38899999999862988886---
Q 000849 957 KGLLEVLASASEYAQLPIRPGEEELVRRLINH------QRFSFANPKCTD-------PHVKANALLQAHFSARHMEG--- 1020 (1254)
Q Consensus 957 ~~il~ils~a~Ef~~i~~R~~e~~~l~~l~~~------~~~~~~~~~~~~-------~~~K~~lLlqa~l~r~~l~~--- 1020 (1254)
.+++.++|.+.||..+++|++|...+.++... .+.++... ... ++.|+++|||+|++|.+++.
T Consensus 513 ~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~ 591 (720)
T 2zj8_A 513 IGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISG-YDPYLERKFFRAFKTALVLLAWINEVPEGEIVE 591 (720)
T ss_dssp HHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSC-CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8999975058532126637778999999998563201236553344-420135567777999999999981798788888
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf ---33885999999999999999999971495999999999999997214799976345799999989998809999724
Q 000849 1021 ---NLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIE 1097 (1254)
Q Consensus 1021 ---~l~~D~~~il~~~~rll~a~idi~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~~~~i~ 1097 (1254)
.+.+|++++++++.|+++||++||...||...+..+..|+|||.||+|++++||+|||||+..++++|+++| ++
T Consensus 592 ~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G---~~ 668 (720)
T 2zj8_A 592 KYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG---FR 668 (720)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTT---CC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHCC---CC
T ss_conf 838876769999999999999999999974969999999999999975898010035627999899999999769---99
Q ss_pred CHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 988983199999998824992669999999633991
Q 000849 1098 TVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPN 1133 (1254)
Q Consensus 1098 ~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~ 1133 (1254)
|+.++++++++++..+-+++++..+++..++.++|.
T Consensus 669 s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 669 SIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp SHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC----
T ss_pred CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 899998489999987474899999999986332233
No 5
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=683.25 Aligned_cols=643 Identities=22% Similarity=0.295 Sum_probs=521.3
Q ss_pred HHHHHHCC--CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 48888102--7776857899988874277347899999522257885889998608853244431469975279999999
Q 000849 411 SYEALYQN--YKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAI 488 (1254)
Q Consensus 411 ~~~~~~~~--~~~~~~iQ~~~~~~~~~~~~n~lv~~~~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~i 488 (1254)
.+.+.+.. |..|+++|.++++.++..+.|++++ ||||||||+++.+++
T Consensus 18 ~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~------------------------------apTGsGKT~~~~l~i 67 (715)
T 2va8_A 18 NVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLT------------------------------SPTGSGKTLIAEMGI 67 (715)
T ss_dssp HHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEE------------------------------CCTTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEE------------------------------CCCCCCHHHHHHHHH
T ss_conf 99999986799879999999999986489948998------------------------------489875999999999
Q ss_pred HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCEEEECHHHHHHHHHHHHC
Q ss_conf 99987216799728999765288999999999985211369299982446631321003675999767657999871100
Q 000849 489 LRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 568 (1254)
Q Consensus 489 l~~l~~~~~~~~~~viii~P~~aLa~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~ 568 (1254)
++.+.. .++ +++|++|+++|+.|++++++ .+... |++++..+|+.....+....++|+|+|||+|+.+++. .
T Consensus 68 l~~~~~--~~~--~il~i~P~r~La~q~~~~~~-~~~~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~ 139 (715)
T 2va8_A 68 ISFLLK--NGG--KAIYVTPLRALTNEKYLTFK-DWELI-GFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--R 139 (715)
T ss_dssp HHHHHH--SCS--EEEEECSCHHHHHHHHHHHG-GGGGG-TCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--C
T ss_pred HHHHHH--CCC--EEEEEECCHHHHHHHHHHHH-HHHCC-CCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHC--C
T ss_conf 999997--798--49999085999999999998-76527-9889998489777620137999999858999999967--8
Q ss_pred CCCCCEEEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 25432154898513111359-89418999999999987414998089992489999678988646798706726999854
Q 000849 569 RKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRP 647 (1254)
Q Consensus 569 ~~~l~~i~liViDEaH~l~~-~~g~~~e~il~rl~~~~~~~~~~~riI~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~ 647 (1254)
...+++++++|+||+|.+.+ .+|..++.++.+++ +.|+|+||||++|.+++++|++... +....||
T Consensus 140 ~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~ 206 (715)
T 2va8_A 140 PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK--------RRNLLALSATISNYKQIAKWLGAEP-----VATNWRP 206 (715)
T ss_dssp CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCEE-----EECCCCS
T ss_pred HHHHHCCCEEEEECHHHCCCCCCCHHHHHHHHHCC--------CCCEEEECCCCCCHHHHHHHHCCCC-----CCCCCCC
T ss_conf 55764369899953555278662229999998653--------6728997178799999999849974-----5799998
Q ss_pred CCCEEEEEECCCC------CHHH---HHHHHCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 3637999302578------8489---998527789999996641699818992594569999999999860068653212
Q 000849 648 VPLEIQIQGVDIT------NFEA---RMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAF 718 (1254)
Q Consensus 648 v~l~~~~~~~~~~------~~~~---~~~~~~~~~~~~i~~~~~~~~~~lVF~~sr~~~~~la~~L~~~~~~~~~~~~~~ 718 (1254)
+|+...+...... .+.. ............+.+.+..++++||||++++.++.++..|....... +
T Consensus 207 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~------~ 280 (715)
T 2va8_A 207 VPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV------S 280 (715)
T ss_dssp SCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS------C
T ss_pred CCCEEEEEECCCCCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHC------C
T ss_conf 8746888835876654046527604432134438999999998669977999798899999999999987654------2
Q ss_pred CCC-CHHCHHHHHHHC------CHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CEEE
Q ss_conf 246-834033577312------76999999601311104899987799999998559911999076432334875-4032
Q 000849 719 LLC-SAKEVEPHVSII------QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA 790 (1254)
Q Consensus 719 l~~-~~~~l~~~~~~~------~~~~L~~~l~~~i~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gidip-~~~V 790 (1254)
+.. ....+......+ .+..|.+++..++++|||+|+..+|..+++.|++|.++|||||+++++|+|+| ..+|
T Consensus 281 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~V 360 (715)
T 2va8_A 281 LDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVI 360 (715)
T ss_dssp CCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCEEEE
T ss_conf 88677899999999866345532299999996687887899999999999999986998599978087661688854999
Q ss_pred -C----CC-------CCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCH--HHHHHHH-CCCCCCCCCCCH--HHHHHH
Q ss_conf -3----55-------34799999996600289999997059999137928--9999850-089641245203--689999
Q 000849 791 -T----GR-------KMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHK--EYYKKFL-YEAFPVESHLHH--FLHDNF 853 (1254)
Q Consensus 791 -~----~~-------~~~s~~~~~Q~~GRaGR~g~d~~G~~iil~~~~~~--~~~~~~l-~~~~pies~l~~--~l~~~l 853 (1254)
+ ++ .+.|..++.||+|||||.|.+..|.|++++++.+. .++++++ ..+.|++|.+.. .+.+++
T Consensus 361 I~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~ 440 (715)
T 2va8_A 361 IGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFL 440 (715)
T ss_dssp ECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHH
T ss_pred EECCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHH
T ss_conf 91875644667778775999999998424279988887569999678067999999997089987353378666799999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHH
Q ss_conf 99986096679999999987731346587766578889200889999999999999688899506099987767156789
Q 000849 854 NAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIA 933 (1254)
Q Consensus 854 ~~ei~~~~i~~~~~~~~~l~~tfrl~~nP~~Y~~~~~~~~~~~~~l~~~i~~~i~~L~~~~~i~~~~~~~~~~t~lG~i~ 933 (1254)
+++++.|.+.+.+++.+|+++||-..+.| ..-++++++.|.+.|+|..++ +.+.+|++|+++
T Consensus 441 l~~~~~g~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~al~~L~~~g~i~~~~-~~~~~t~lG~~~ 502 (715)
T 2va8_A 441 LGILSAEGNLSEKQLENFAYESLLAKQLV-----------------DVYFDRAIRWLLEHSFIKEEG-NTFALTNFGKRV 502 (715)
T ss_dssp HHHHHHHCSEEHHHHHHHHTTSSSCHHHH-----------------HHHHHHHHHHHHHTTSEEECS-SEEEECHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCC-----------------HHHHHHHHHHHHHCCCEEECC-CEEEECHHHHHH
T ss_conf 99985156688999999998507876426-----------------388999999998884976669-868667689999
Q ss_pred HHHCCCHHHHHHHHHCCCC--CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCC-------HHH
Q ss_conf 8514884429999820457--57688899998384010159999016999999982-1684359999999-------388
Q 000849 934 SYYYISYKTIECFSSSLTS--KTKMKGLLEVLASASEYAQLPIRPGEEELVRRLIN-HQRFSFANPKCTD-------PHV 1003 (1254)
Q Consensus 934 s~y~I~~~T~~~~~~~l~~--~~~~~~il~ils~a~Ef~~i~~R~~e~~~l~~l~~-~~~~~~~~~~~~~-------~~~ 1003 (1254)
|+||++|.++++|...+.. ..+..+++.++|.+.||.++++|++|...+.++.. ..+.......+.. ++.
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (715)
T 2va8_A 503 ADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINAL 582 (715)
T ss_dssp HHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHH
T ss_conf 99748986799999986542578789999995268433457648678999999998521111136665431023457779
Q ss_pred HHHHHHHHHHCCCCCCC-----CH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999862988886-----33-8859999999999999999999714959999999999999972147999763457
Q 000849 1004 KANALLQAHFSARHMEG-----NL-KLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQL 1077 (1254)
Q Consensus 1004 K~~lLlqa~l~r~~l~~-----~l-~~D~~~il~~~~rll~a~idi~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Ql 1077 (1254)
|+++|||+|++|.++.. .+ .+|+.++++++.|+++|+.+||...||...+..+..|++||.+|+|++.+||+|+
T Consensus 583 k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~ql 662 (715)
T 2va8_A 583 KVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQI 662 (715)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCCHHHC
T ss_conf 99999999984998789999978982449999999999999999999994948899999999999982898321405418
Q ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHH-HHCCCCCE
Q ss_conf 9999998999880999972498898319999999882499266999999-96339914
Q 000849 1078 PHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIAR-FCNRFPNI 1134 (1254)
Q Consensus 1078 p~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~-~~~~~P~i 1134 (1254)
||++..++++|+++| ++++.+++ ++++++..+++ +.+++.+.+ +...+|.+
T Consensus 663 p~i~~~rar~L~~~g---~~s~~~l~-~~~~~l~~~l~--~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 663 SGVGRKRARLLYNNG---IKELGDVV-MNPDKVKNLLG--QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp TTCCHHHHHHHHHTT---CCSHHHHH-HCHHHHHHHHC--HHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHCC---CCCHHHHH-CCHHHHHHHHC--HHHHHHHHHHHHHHHCCC
T ss_conf 999989999999859---99899982-79999999967--548999999998762557
No 6
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=1.00 E-value=1 Score=522.40 Aligned_cols=324 Identities=55% Similarity=0.955 Sum_probs=310.6
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99877671567898514884429999820457576888999983840101599990169999999821684359999999
Q 000849 921 DMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTD 1000 (1254)
Q Consensus 921 ~~~~~~t~lG~i~s~y~I~~~T~~~~~~~l~~~~~~~~il~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~ 1000 (1254)
.+.+.||++|+|||+|||+++|++.|+..+++.++..+++.++|.|.||+++++|++|+.++.+|++.+|++++++.+++
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 89 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFND 89 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTC
T ss_pred CCEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 76463684789999978798899999997152699889999971538775277784449999999985877566678998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 38899999999862988886338859999999999999999999714959999999999999972147999763457999
Q 000849 1001 PHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHF 1080 (1254)
Q Consensus 1001 ~~~K~~lLlqa~l~r~~l~~~l~~D~~~il~~~~rll~a~idi~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i 1080 (1254)
++.|+++||||||+|.++|.+|.+|+.+|++++.||++||+||+..+||+.++.++++|+|||+||+|++++||+|||||
T Consensus 90 ~~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i 169 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHF 169 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
T ss_conf 89999999999974788976899999999999999999999999976889999999999999997438999950069997
Q ss_pred CHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEE
Q ss_conf 99989998809999724988983199999998824992669999999633991489999851643223886289999999
Q 000849 1081 TKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLE 1160 (1254)
Q Consensus 1081 ~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~i~~~v~~~~~i~~~~~~~~i~v~l~ 1160 (1254)
+++.+++++++| +.++.+|+++++++++.++++++.+++++.+++++||++++++++.+++.+++ |+.++++|+++
T Consensus 170 ~~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~-~~~~~l~v~l~ 245 (339)
T 2q0z_X 170 TSEHIKRCTDKG---VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRS-GGPVVVLVQLE 245 (339)
T ss_dssp CHHHHHHHHHTT---CCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBT-TSEEEEEEEEE
T ss_pred CHHHHHHHHHCC---CCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-CCCEEEEEEEE
T ss_conf 999999998659---99799997499999999978999999999999986896799999816861238-97089999999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCE
Q ss_conf 63899877686014899998754499999968999499998965323435999998306899327999999377555570
Q 000849 1161 RDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQ 1240 (1254)
Q Consensus 1161 r~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~~~~~~~~~~~~~~f~~p~~~g~~~~~v~~~sD~yiG~D~ 1240 (1254)
|++ +..+.+|||+||+.|.|+||++|||.++|+|+.++|+++.+....+++|++| .+|.+.|+++++||+|+|+|+
T Consensus 246 ~~~---~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~~~~~l~f~~P-~~g~~~~~v~~vSD~ylG~D~ 321 (339)
T 2q0z_X 246 REE---EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQ 321 (339)
T ss_dssp ECS---SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECC-SSEEEEEEEEEEESSCSSCCE
T ss_pred ECC---CCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCCCE
T ss_conf 888---7787245898998887758999998899989999998226644899999778-899813999997446667645
Q ss_pred EEEEEEEEECCC
Q ss_conf 899999931699
Q 000849 1241 EYSFTVDVKEAG 1252 (1254)
Q Consensus 1241 ~~~~~l~v~~~~ 1252 (1254)
+++++++|.+++
T Consensus 322 ~~~i~~~v~~~~ 333 (339)
T 2q0z_X 322 EYKFSVDVKEAE 333 (339)
T ss_dssp EEEEEEEEBCC-
T ss_pred EEEEEEEEECCC
T ss_conf 999999970576
No 7
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=1.00 E-value=1 Score=518.99 Aligned_cols=323 Identities=35% Similarity=0.658 Sum_probs=305.9
Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCC
Q ss_conf 099987767156789851488442999982045757688899998384010159999016999999982168435-9999
Q 000849 919 EDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSF-ANPK 997 (1254)
Q Consensus 919 ~~~~~~~~t~lG~i~s~y~I~~~T~~~~~~~l~~~~~~~~il~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~-~~~~ 997 (1254)
++++.+.||++|+|||+|||++.|++.|...++++++..++++++|.|.||+++++|++|+..+.+|++.+|+++ .+..
T Consensus 4 ~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~ 83 (328)
T 3im1_A 4 EATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTS 83 (328)
T ss_dssp CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSC
T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 67987667816699998787899999999973324899999998446788874635820689999999768876666677
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99938899999999862988886338859999999999999999999714959999999999999972147999763457
Q 000849 998 CTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQL 1077 (1254)
Q Consensus 998 ~~~~~~K~~lLlqa~l~r~~l~~~l~~D~~~il~~~~rll~a~idi~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Ql 1077 (1254)
+++++.|+++||||||+|.++|.+|.+|+.+|++++.||++||+|++..+||+. +.++++|+|||+||+|++++||+||
T Consensus 84 ~~~~~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Ql 162 (328)
T 3im1_A 84 SGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQI 162 (328)
T ss_dssp SSSHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGS
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 898789999999999779999768999999999999999999999997289389-9999999999995369999961579
Q ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 99999989998809999724988983199999998824992669999999633991489999851643223886289999
Q 000849 1078 PHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQV 1157 (1254)
Q Consensus 1078 p~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~i~~~v~~~~~i~~~~~~~~i~v 1157 (1254)
|||+++.++++.++| ++++.+|+++++++++.++++++++++++.+++++||.++++++++|++.+++ |+.+++.|
T Consensus 163 p~i~~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~-~~~~~l~v 238 (328)
T 3im1_A 163 PHFNNKILEKCKEIN---VETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLIS-GVKQKITI 238 (328)
T ss_dssp TTCCHHHHHHHHHTT---CCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCT-TSEEEEEE
T ss_pred CCCCHHHHHHHHHCC---CCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-CCEEEEEE
T ss_conf 998989999987579---98899986089999986728999999999999986898799999658773168-97289999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEECC-CCEEEEEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 99963899877686014899998754499999968999499998965323-43599999830689932799999937755
Q 000849 1158 VLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQR-KSRAKLDFAAPVEGGKKTYTLDFMCDSYM 1236 (1254)
Q Consensus 1158 ~l~r~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~~~~~~~-~~~~~~~f~~p~~~g~~~~~v~~~sD~yi 1236 (1254)
+++|++.+ ..+.+|||+||+.|.|+||++|||.++|+|++++|+++.+ ..+++++|++| .+|.++|+++++||+|+
T Consensus 239 ~l~~~~~~--~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~~~~~~~~f~~p-~~g~~~~~v~~vsD~yl 315 (328)
T 3im1_A 239 QLTRDVEP--ENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTP-TSGKHNLTIWCVCDSYL 315 (328)
T ss_dssp EEEESSCC--SCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSSEEEEEEEEECC-CSEEEEEEEEEEESSCS
T ss_pred EEEECCCC--CCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEECC-CCCCEEEEEEEEECCCC
T ss_conf 99988888--7871778999998647889999988899699985331466651799999768-99857899999956876
Q ss_pred CCCEEEEEEEEEE
Q ss_conf 5570899999931
Q 000849 1237 GCDQEYSFTVDVK 1249 (1254)
Q Consensus 1237 G~D~~~~~~l~v~ 1249 (1254)
|+|++++++++|.
T Consensus 316 G~d~~~~~~l~V~ 328 (328)
T 3im1_A 316 DADKELSFEINVK 328 (328)
T ss_dssp SCCEEEEEEEEEC
T ss_pred CEEEEEEEEEEEC
T ss_conf 5037987988869
No 8
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=388.18 Aligned_cols=382 Identities=24% Similarity=0.338 Sum_probs=267.2
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 22578858899986088532444314699752799999999998721679972899976528899999999998521136
Q 000849 449 LMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKEL 528 (1254)
Q Consensus 449 ~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~viii~P~~aLa~q~~~~~~~~~~~~~ 528 (1254)
+||+++++|.+++..+.++..++++||||+|||++++++++..+.. ++ +++|++|+++|+.|+++++.+.++
T Consensus 83 ~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~--rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCC---CC--EEEEECCHHHHHHHHHHHHHHHHC---
T ss_conf 8999989999999999739989998899998099999999997515---98--699987959999999999999718---
Q ss_pred CCEEEEECCCCCCCHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 929998244663132100367599976765799987110025432154898513111359-8941899999999998741
Q 000849 529 GMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIASQ 607 (1254)
Q Consensus 529 ~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~e~il~rl~~~~~~ 607 (1254)
.++.++|+.... ..++|+|+|||++..++.++ ...+.++++||+||+|.+.+ .+|..++.++..+
T Consensus 155 --~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~~--~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l------ 220 (1010)
T 2xgj_A 155 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIILL------ 220 (1010)
T ss_dssp --CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS------
T ss_pred --CEEEEECCCCCC----CCCCEEEECHHHHHHHHHCC--CCHHHCCCEEEEECHHHHCCCCHHHHHHHHHHHC------
T ss_conf --778996887668----99999997099999999708--4012027889970443523542359999999856------
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCC-CCEEEECCCCCCCCCCEEEEEECCC----------CC-----HHHHHHHHC-
Q ss_conf 499808999248999967898864679-8706726999854363799930257----------88-----489998527-
Q 000849 608 VENKIRIVALSTSLANAKDLGEWIGAS-SHGVFNFPPGVRPVPLEIQIQGVDI----------TN-----FEARMKAMT- 670 (1254)
Q Consensus 608 ~~~~~riI~lSATl~~~~~~~~~l~~~-~~~~~~~~~~~r~v~l~~~~~~~~~----------~~-----~~~~~~~~~- 670 (1254)
+.+.+++++|||++|..+++.|++.. ......+....+|+|+..++..... .. +......+.
T Consensus 221 -~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 221 -PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp -CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred -CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf -8888699980888988999999986348974898258876650699995487651464355433134778999999754
Q ss_pred ----------------------------HHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ----------------------------78999999664--169981899259456999999999986006865321224
Q 000849 671 ----------------------------KPTYTAIMQHA--KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLL 720 (1254)
Q Consensus 671 ----------------------------~~~~~~i~~~~--~~~~~~lVF~~sr~~~~~la~~L~~~~~~~~~~~~~~l~ 720 (1254)
......+...+ ....++||||++++.|+.++..|.........
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~------- 372 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD------- 372 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHH-------
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHH-------
T ss_conf 3033543222345544455566544433678999999998469998899978899999999999837899767-------
Q ss_pred CCHHCHH----HHHHHC--------CHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-C
Q ss_conf 6834033----577312--------76999999601311104899987799999998559911999076432334875-4
Q 000849 721 CSAKEVE----PHVSII--------QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-A 787 (1254)
Q Consensus 721 ~~~~~l~----~~~~~~--------~~~~L~~~l~~~i~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gidip-~ 787 (1254)
....+. .....+ ....+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|+|+| .
T Consensus 373 -e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~ 451 (1010)
T 2xgj_A 373 -EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 451 (1010)
T ss_dssp -HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBS
T ss_pred -HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCC
T ss_conf -7999999999998743643311025799999873782677788999999999999866997299981276525788886
Q ss_pred EEE-C----CCC----CCCHHHHHHHHCCCCCCCCCCCCEEEEECCCC-CHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 032-3----553----47999999966002899999970599991379-2899998500-89641245203689999999
Q 000849 788 HLA-T----GRK----MLILTTLLQMMGHAGRPLLDNSEKCVILCHAP-HKEYYKKFLY-EAFPVESHLHHFLHDNFNAE 856 (1254)
Q Consensus 788 ~~V-~----~~~----~~s~~~~~Q~~GRaGR~g~d~~G~~iil~~~~-~~~~~~~~l~-~~~pies~l~~~l~~~l~~e 856 (1254)
.+| + ++. |.++.+|.||+|||||.|.+..|.|++++.+. +...+.+++. .+.|++|.+.......+ ..
T Consensus 452 ~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~~il-nl 530 (1010)
T 2xgj_A 452 TVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMIL-NL 530 (1010)
T ss_dssp EEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHHHHH-HH
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH-HH
T ss_conf 49996773037767751899999676421056889985599999799879999999984898410046677699999-99
Q ss_pred HHHCCC
Q ss_conf 860966
Q 000849 857 IVAGVI 862 (1254)
Q Consensus 857 i~~~~i 862 (1254)
+....+
T Consensus 531 l~~~~~ 536 (1010)
T 2xgj_A 531 MRVEGI 536 (1010)
T ss_dssp HHSSSC
T ss_pred HHHCCC
T ss_conf 875589
No 9
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=386.63 Aligned_cols=401 Identities=23% Similarity=0.316 Sum_probs=276.2
Q ss_pred HCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 22257885889998608853244431469975279999999999872167997289997652889999999999852113
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~viii~P~~aLa~q~~~~~~~~~~~~ 527 (1254)
.+||++++.|.+++..+.++..++++||||||||+++.++++..+.. ++ +++|++|+++|+.|+++++.+.++
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~--rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred HCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CC--EEEEECCCHHHHHHHHHHHHHHHC--
T ss_conf 47999999999999999769988998899997199999999999755---97--499990849999999999999828--
Q ss_pred CCCEEEEECCCCCCCHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHH
Q ss_conf 6929998244663132100367599976765799987110025432154898513111359-894189999999999874
Q 000849 528 LGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIAS 606 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~e~il~rl~~~~~ 606 (1254)
.++.++|+...+ .+++|+|+|||+|..++... ...+.++++||+||+|++.+ .+|..++.++..+
T Consensus 253 ---~VglltGd~~~~----~~~~IlV~Tpe~L~~~L~~~--~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l----- 318 (1108)
T 3l9o_A 253 ---DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIILL----- 318 (1108)
T ss_dssp ---SEEEECSSCBCC----CSCSEEEEEHHHHHHHHHHC--SSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-----
T ss_pred ---CCCEEECCCCCC----CCCCEEEECHHHHHHHHHCC--CCCCCCCCEEEEHHHHHCCCCCHHHHHHHHHHHC-----
T ss_conf ---921896765268----99998996769999999747--5432237899870021202300689999999864-----
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCCCC-CEEEECCCCCCCCCCEEEEEECCCCC---------------HHHHHHHH-
Q ss_conf 14998089992489999678988646798-70672699985436379993025788---------------48999852-
Q 000849 607 QVENKIRIVALSTSLANAKDLGEWIGASS-HGVFNFPPGVRPVPLEIQIQGVDITN---------------FEARMKAM- 669 (1254)
Q Consensus 607 ~~~~~~riI~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~v~l~~~~~~~~~~~---------------~~~~~~~~- 669 (1254)
+.+.++++||||+++..+++.|++... .....+....+|+|+..++....... +...+..+
T Consensus 319 --~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~ 396 (1108)
T 3l9o_A 319 --PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 396 (1108)
T ss_dssp --CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-
T ss_pred --CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf --777649997288898799999998515898279834787554068986247764256414422011566899999987
Q ss_pred -----------------------------CHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCC---
Q ss_conf -----------------------------778999999664-16998189925945699999999998600686532---
Q 000849 670 -----------------------------TKPTYTAIMQHA-KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKS--- 716 (1254)
Q Consensus 670 -----------------------------~~~~~~~i~~~~-~~~~~~lVF~~sr~~~~~la~~L~~~~~~~~~~~~--- 716 (1254)
.......+.... ...+++||||+++..|+.++..|............
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 476 (1108)
T 3l9o_A 397 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 476 (1108)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 54113321123433222234455544320568999999999628998899958487899999999864699777899999
Q ss_pred CCCCCCHHCHHHHHHHC-CHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CEEE-CCC
Q ss_conf 12246834033577312-76999999601311104899987799999998559911999076432334875-4032-355
Q 000849 717 AFLLCSAKEVEPHVSII-QEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLA-TGR 793 (1254)
Q Consensus 717 ~~l~~~~~~l~~~~~~~-~~~~L~~~l~~~i~~~h~~l~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gidip-~~~V-~~~ 793 (1254)
.+.......+...-..+ ....+...+..||+.|||+|++.+|..+++.|++|.++|||||+++++|+|+| +.+| ++.
T Consensus 477 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~ 556 (1108)
T 3l9o_A 477 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 556 (1108)
T ss_dssp HHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEECC
T ss_conf 99998875046443300568878776515756525899899999999998679984999872776577878745999657
Q ss_pred C--------CCCHHHHHHHHCCCCCCCCCCCCEEEEECCCC-CHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 3--------47999999966002899999970599991379-2899998500-896412452036899999998609667
Q 000849 794 K--------MLILTTLLQMMGHAGRPLLDNSEKCVILCHAP-HKEYYKKFLY-EAFPVESHLHHFLHDNFNAEIVAGVIE 863 (1254)
Q Consensus 794 ~--------~~s~~~~~Q~~GRaGR~g~d~~G~~iil~~~~-~~~~~~~~l~-~~~pies~l~~~l~~~l~~ei~~~~i~ 863 (1254)
. +.|+.+|+||+|||||.|.+..|.|++++.+. ....+.+++. .+.|+.|.+.......+| .+..+.+
T Consensus 557 ~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~iln-ll~~~~~- 634 (1108)
T 3l9o_A 557 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN-LMRVEGI- 634 (1108)
T ss_dssp EEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHSTTC-
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHHHCCC-
T ss_conf 66686445638999999763634778999855999995588689999999619996312265785999999-9886478-
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 9999999987731
Q 000849 864 NKQDAVDYLTWTF 876 (1254)
Q Consensus 864 ~~~~~~~~l~~tf 876 (1254)
+. -+++..+|
T Consensus 635 ~~---~~~l~~sf 644 (1108)
T 3l9o_A 635 SP---EFMLEHSF 644 (1108)
T ss_dssp CH---HHHHHHSS
T ss_pred CH---HHHHHHHH
T ss_conf 89---99999989
No 10
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=1.00 E-value=1 Score=372.84 Aligned_cols=374 Identities=24% Similarity=0.366 Sum_probs=272.2
Q ss_pred HCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 22257885889998608853244431469975279999999999872167997289997652889999999999852113
Q 000849 448 KLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKE 527 (1254)
Q Consensus 448 ~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~viii~P~~aLa~q~~~~~~~~~~~~ 527 (1254)
.+||++++.|.+++..+.++.+++++||||||||+++++++...+.. ++ +++|++|+++|+.|+++++.+.++
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~--~vlvl~PtraLa~Q~~~~l~~~~~-- 107 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MT--KTIYTSPIKALSNQKFRDFKETFD-- 107 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TC--EEEEEESCGGGHHHHHHHHHTTC---
T ss_pred HCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC---CC--EEEEEECCHHHHHHHHHHHHHHCC--
T ss_conf 28999999999999999849989999799985899999999999835---98--599995879999999999999769--
Q ss_pred CCCEEEEECCCCCCCHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHH
Q ss_conf 6929998244663132100367599976765799987110025432154898513111359-894189999999999874
Q 000849 528 LGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVARMRYIAS 606 (1254)
Q Consensus 528 ~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~e~il~rl~~~~~ 606 (1254)
+..++.++|+...+ .+++|+|+||+++...+.. ....+.+++++|+||+|++.+ .+|..++.++..+
T Consensus 108 -~~~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l----- 175 (997)
T 4a4z_A 108 -DVNIGLITGDVQIN----PDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML----- 175 (997)
T ss_dssp --CCEEEECSSCEEC----TTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS-----
T ss_pred -CCEEEEEECCCCCC----CCCCEEEECHHHHHHHHHH--CCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHC-----
T ss_conf -98399996898667----9999899889999999981--81120578899998954666654489999999854-----
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCCCC-CEEEECCCCCCCCCCEEEEEECCC-------C-CH-HHHH----------
Q ss_conf 14998089992489999678988646798-706726999854363799930257-------8-84-8999----------
Q 000849 607 QVENKIRIVALSTSLANAKDLGEWIGASS-HGVFNFPPGVRPVPLEIQIQGVDI-------T-NF-EARM---------- 666 (1254)
Q Consensus 607 ~~~~~~riI~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~v~l~~~~~~~~~-------~-~~-~~~~---------- 666 (1254)
+.+.++|++|||++|..++++|++... ..++.+....||+|+..++..... . .+ ...+
T Consensus 176 --~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (997)
T 4a4z_A 176 --PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGE 253 (997)
T ss_dssp --CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--
T ss_pred --CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf --668878997699897689999983235886599836888756468885487500000420356677799999986322
Q ss_pred ---------------------------------------------------------------HHHCHHHHHHHHHHH--
Q ss_conf ---------------------------------------------------------------852778999999664--
Q 000849 667 ---------------------------------------------------------------KAMTKPTYTAIMQHA-- 681 (1254)
Q Consensus 667 ---------------------------------------------------------------~~~~~~~~~~i~~~~-- 681 (1254)
....+..+..+...+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~ 333 (997)
T 4a4z_A 254 SAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK 333 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 43343210000012222234444321235433344444555444443344434566542212246666689999999984
Q ss_pred HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCHHHHHHHC--------CHHHHHHHHHCCCEEECCCC
Q ss_conf 1699818992594569999999999860068653212246834033577312--------76999999601311104899
Q 000849 682 KNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSII--------QEEMLRATLRLGVGYLHEGL 753 (1254)
Q Consensus 682 ~~~~~~lVF~~sr~~~~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--------~~~~L~~~l~~~i~~~h~~l 753 (1254)
....++||||++++.|+.++..|............ .+ ...+......+ ....+...+..+++.|||+|
T Consensus 334 ~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~-~i---~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 334 RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKS-QI---HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHH-HH---HHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHH-HH---HHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCC
T ss_conf 79997899989888999999998457999778899-99---999999997446544211247878888636846624999
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CEEECC---------CCCCCHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 987799999998559911999076432334875-403235---------5347999999966002899999970599991
Q 000849 754 NKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT-AHLATG---------RKMLILTTLLQMMGHAGRPLLDNSEKCVILC 823 (1254)
Q Consensus 754 ~~~~R~~v~~~F~~g~~~VLVaT~~l~~Gidip-~~~V~~---------~~~~s~~~~~Q~~GRaGR~g~d~~G~~iil~ 823 (1254)
++.+|..+++.|++|.++|||||+++++|+|+| ..+|.. ..+.+..+|.||+|||||.|.+..|.|++++
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 99999999999977998399972086677988886699940532467667779999982774133568877635999964
Q ss_pred C--CCCHHHHHHHHC-CCCCCCCCCC
Q ss_conf 3--792899998500-8964124520
Q 000849 824 H--APHKEYYKKFLY-EAFPVESHLH 846 (1254)
Q Consensus 824 ~--~~~~~~~~~~l~-~~~pies~l~ 846 (1254)
. ..+...+++++. .+.++.|.+.
T Consensus 490 ~~~~~~~~~~~~~i~~~~~~l~s~~~ 515 (997)
T 4a4z_A 490 YNSPLSIATFKEVTMGVPTRLQSQFR 515 (997)
T ss_dssp CSSCCCHHHHHHHHHSCCCCCCCCCC
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 88852399999996089961201236
Done!