BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000850
(1254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 36 KRLTPQIDGAPNYRQADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPV 95
K TP P + D+L + G A + ++ +L + Q G + + LR+E
Sbjct: 371 KGFTP----TPTRKGLDTLYMSGSAEFSNGELQAMLPVLKQQAKGP---IYIMDLRQETH 423
Query: 96 VYINGRP---FVLRDVGRPFSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDE 152
NG + LRD G NL G N+A V + E+ + AAR K L+ E
Sbjct: 424 GVFNGNAVSWYGLRDWG----NL---GKNKAEVLK-----DENSRLNAAR--GKSLIVAE 469
Query: 153 LPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKI 212
L +M +PV +SV + E+ VE + Y R+ TD P + D ++
Sbjct: 470 LDKDKMPIDPKPVKIESV-----MTEQQLVEKNGLHYYRIAATDHIWPSAANIDEFINFT 524
Query: 213 SQTDLNTEVIFNCQMGRGRTTTGMVIATLV 242
N + F+CQ G GRTT M + ++
Sbjct: 525 RTMPANAWLHFHCQAGAGRTTAYMAMYDMM 554
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 551 LKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYAR 610
LK++ R G +++V D D + V ESV T ++ +E +G + Y R
Sbjct: 450 LKDENSRLNAARGKSLIVAELDKDKMPIDP-KPVKIESVMTEQQL---VEKNG--LHYYR 503
Query: 611 VPITDGKAPKTSDFDMLAVNIASASKDTAFV-FNCQMGRGRTTTGTVIACLLK 662
+ TD P ++ D +N A++ F+CQ G GRTT + ++K
Sbjct: 504 IAATDHIWPSAANIDEF-INFTRTMPANAWLHFHCQAGAGRTTAYMAMYDMMK 555
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 608 YARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
Y R+ + D P D D S KD ++C G GRTT V+ +LK
Sbjct: 203 YFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIFMVMHDILK 257
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 40/249 (16%)
Query: 3 IAKEPEQVLKMRGGSV--LGKRTILKSDHFPGCQNKRLTPQIDGAPNYRQADSLRVHGVA 60
+ P+ LK+ V L + + SD + G + P G D++ V +
Sbjct: 39 VKNPPKLALKIDRADVNQLPRNFRMGSDKYVGVTKTGIMPTRKGM------DTMNVSASS 92
Query: 61 IPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVLRDVGRPFSNLEYTGI 120
+ + + +LK + K Q + LR E Y+NG F+N ++
Sbjct: 93 CFSEKELEAILKKVPV----KPSQFYDVDLRGESHGYLNGTAVSW------FANHDWGND 142
Query: 121 NRAR-------VEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAP 173
R EQ+ A LK + RF +K V PV + K
Sbjct: 143 GRTEDIIIPLEKEQL-ASLKGSTVKSIYRFDDKKNVI-----------LSPVYVNYNKVR 190
Query: 174 LDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTT 233
EE V+ + +Y R+ + D P + D D ++ + + ++C G GRTT
Sbjct: 191 T---EEEMVKQHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTT 247
Query: 234 TGMVIATLV 242
MV+ ++
Sbjct: 248 IFMVMHDIL 256
>pdb|2PSZ|A Chain A, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|2PSZ|B Chain B, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|3D1H|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1H|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1O|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1O|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1Q|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
pdb|3D1Q|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
Length = 340
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 117 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 174
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 175 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 217
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+C+ G GRTT V+ +LK
Sbjct: 218 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 264
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 27/207 (13%)
Query: 41 QIDGA--PNYRQADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYI 98
+D A P+ D+L + G + T ++NV + + G + + LR+E Y+
Sbjct: 79 HLDAAYVPSREGMDALHISGSSAFTPAQLKNVAAKLREKTAGP---IYDVDLRQESHGYL 135
Query: 99 NGRPFVLRDVGRPFSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILV---TDELPD 155
+G P + ++ + ++ Q EA E + AA + +LP+
Sbjct: 136 DGIPVSW------YGERDWANLGKS---QHEALADERHRLHAALHKTVYIAPLGKHKLPE 186
Query: 156 GQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT 215
G V + + V E+ E + Y R+ TD P ++ D +
Sbjct: 187 GGEVRRVQKVQT----------EQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTL 236
Query: 216 DLNTEVIFNCQMGRGRTTTGMVIATLV 242
+ + F+C+ G GRTT MV+ ++
Sbjct: 237 PQDAWLHFHCEAGVGRTTAFMVMTDML 263
>pdb|1U26|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
pdb|1U26|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
Length = 337
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 112 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 169
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 170 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 212
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+C+ G GRTT V+ +LK
Sbjct: 213 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 259
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 25/200 (12%)
Query: 46 PNYRQADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYINGRPFVL 105
P+ D+L + G + T ++NV + + G + + LR+E Y++G P
Sbjct: 81 PSREGMDALHISGSSAFTPAQLKNVAAKLREKTAGP---IYDVDLRQESHGYLDGIPVSW 137
Query: 106 RDVGRPFSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILV---TDELPDGQMVDQW 162
+ ++ + ++ Q EA E + AA + +LP+G V +
Sbjct: 138 ------YGERDWANLGKS---QHEALADERHRLHAALHKTVYIAPLGKHKLPEGGEVRRV 188
Query: 163 EPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVI 222
+ V E+ E + Y R+ TD P ++ D + + +
Sbjct: 189 QKVQT----------EQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLH 238
Query: 223 FNCQMGRGRTTTGMVIATLV 242
F+C+ G GRTT MV+ ++
Sbjct: 239 FHCEAGVGRTTAFMVMTDML 258
>pdb|2B4O|A Chain A, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4O|B Chain B, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 111 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 168
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 169 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 211
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+C+ G G+TT V+ +LK
Sbjct: 212 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGKTTAFMVMTDMLK 258
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 27/207 (13%)
Query: 41 QIDGA--PNYRQADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYI 98
+D A P+ D+L + G + T ++NV + + G V LR+E Y+
Sbjct: 73 HLDAAYVPSREGMDALHISGSSAFTPAQLKNVAAKLREKTAGPIYDV---DLRQESHGYL 129
Query: 99 NGRPFVLRDVGRPFSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILV---TDELPD 155
+G P + ++ + ++ Q EA E + AA + +LP+
Sbjct: 130 DGIPVSW------YGERDWANLGKS---QHEALADERHRLHAALHKTVYIAPLGKHKLPE 180
Query: 156 GQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT 215
G V + + V E+ E + Y R+ TD P ++ D +
Sbjct: 181 GGEVRRVQKVQT----------EQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTL 230
Query: 216 DLNTEVIFNCQMGRGRTTTGMVIATLV 242
+ + F+C+ G G+TT MV+ ++
Sbjct: 231 PQDAWLHFHCEAGVGKTTAFMVMTDML 257
>pdb|2B4P|A Chain A, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4P|B Chain B, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 111 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 168
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + ++Y R+ T+
Sbjct: 169 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATN 211
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+C+ G GRTT V+ +LK
Sbjct: 212 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGRTTAFMVMTDMLK 258
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 27/207 (13%)
Query: 41 QIDGA--PNYRQADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPVVYI 98
+D A P+ D+L + G + T ++NV + + G + + LR+E Y+
Sbjct: 73 HLDAAYVPSREGMDALHISGSSAFTPAQLKNVAAKLREKTAGP---IYDVDLRQESHGYL 129
Query: 99 NGRPFVLRDVGRPFSNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILV---TDELPD 155
+G P + ++ + ++ Q EA E + AA + +LP+
Sbjct: 130 DGIPVSW------YGERDWANLGKS---QHEALADERHRLHAALHKTVYIAPLGKHKLPE 180
Query: 156 GQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT 215
G V + + V E+ E + Y R+ T+ P ++ D +
Sbjct: 181 GGEVRRVQKVQT----------EQEVAEAAGMRYFRIAATNHVWPTPENIDRFLAFYRTL 230
Query: 216 DLNTEVIFNCQMGRGRTTTGMVIATLV 242
+ + F+C+ G GRTT MV+ ++
Sbjct: 231 PQDAWLHFHCEAGVGRTTAFMVMTDML 257
>pdb|1U24|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
pdb|1U24|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
pdb|1U25|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
pdb|1U25|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
pdb|1U25|C Chain C, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
Length = 337
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 112 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 169
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + +Y R+ TD
Sbjct: 170 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----XRYFRIAATD 212
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+C+ G GRTT V LK
Sbjct: 213 HVWPTPENIDRFLAFYRTLPQDAWLHFHCEAGVGRTTAFXVXTDXLK 259
>pdb|3MOZ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
pdb|3MOZ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
Length = 314
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 91 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 148
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 149 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 191
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+ + G GRTT V+ +LK
Sbjct: 192 HVWPTPENIDRFLAFYRTLPQDAWLHFHAEAGVGRTTAFMVMTDMLK 238
>pdb|3O3L|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
pdb|3O3L|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
Length = 340
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 117 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 174
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 175 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 217
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+ + G GRTT V+ +LK
Sbjct: 218 HVWPTPENIDRFLAFYRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLK 264
>pdb|3MMJ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
Hexakisphosphate
pdb|3MMJ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
Hexakisphosphate
Length = 314
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 91 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 148
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 149 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 191
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+ + G GRTT V+ +LK
Sbjct: 192 HVWPTPENIDRFLAFYRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLK 238
>pdb|3P3A|A Chain A, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
pdb|3P3A|B Chain B, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
Length = 320
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 427 MGVVAALRNGQVLGSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDG 486
MG + A G GS L +D P + + PER+ A G P + D
Sbjct: 9 MGTLEAQTQGP--GSMVSLPADPSPELKQYAHPERLVTADWLASNLGRPGLVIVESDED- 65
Query: 487 IRSVIRRIGHFKGCCPVFWHNMREEPVI--YINGKPF 521
++ GH G + WH +P + YING+ F
Sbjct: 66 --VLLYDTGHIPGAVKIDWHTDLNDPAVRDYINGEQF 100
>pdb|2PT0|A Chain A, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
pdb|2PT0|B Chain B, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
Length = 340
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 498 KGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNM--LEYTGIDRERVERMEARLKEDI 555
K P++ ++R+E Y++G P V ER + N+ ++ + ER R+ A L + +
Sbjct: 117 KTAGPIYDVDLRQESHGYLDGIP-VSWYGERDWANLGKSQHEALADER-HRLHAALHKTV 174
Query: 556 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITD 615
A + H+ +G E + VQT EV + ++Y R+ TD
Sbjct: 175 YI-------APLGKHKLPEGG-----EVRRVQKVQTEQEVAEAAG-----MRYFRIAATD 217
Query: 616 GKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662
P + D + +D F+ + G GRTT V+ +LK
Sbjct: 218 HVWPTPENIDRFLAFYRTLPQDAWLHFHXEAGVGRTTAFMVMTDMLK 264
>pdb|3HZU|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Ssea (Rhodanese) From Mycobacterium
Tuberculosis
Length = 318
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 427 MGVVAALRNGQVLGSQTVLKSDHCPGCQNQSLPERVEGAPNFREVSGFPVYGVANPTIDG 486
MG + A G GS L +D P + PER+ A G P + D
Sbjct: 9 MGTLEAQTQGP--GSMP-LPADPSPTLSAYAHPERLVTADWLSAHMGAPGLAIVESDED- 64
Query: 487 IRSVIRRIGHFKGCCPVFWHNMREEPVI--YINGKPF 521
++ +GH G + WH +P + YING+ F
Sbjct: 65 --VLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQF 99
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 802 EAFDGFCGQGESRMTFKSWLRQRP----EVQAMKWSIRIRP---GRFLTVPEELRAPQES 854
E DG QG R K W +Q + ++ + P G ++T E AP+E
Sbjct: 215 EMMDGLM-QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF-EGANAPKEP 272
Query: 855 QHGDAVMEAIVRARNGSVL 873
Q DAV+ A RA NG ++
Sbjct: 273 QRYDAVLVAAGRAPNGKLI 291
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 802 EAFDGFCGQGESRMTFKSWLRQRP----EVQAMKWSIRIRP---GRFLTVPEELRAPQES 854
E DG QG R K W +Q + ++ + P G ++T E AP+E
Sbjct: 215 EMMDGLM-QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF-EGANAPKEP 272
Query: 855 QHGDAVMEAIVRARNGSVL 873
Q DAV+ A RA NG ++
Sbjct: 273 QRYDAVLVAAGRAPNGKLI 291
>pdb|2QGM|A Chain A, Crystal Structure Of Succinoglycan Biosynthesis Protein At
The Resolution 1.7 A. Northeast Structural Genomics
Consortium Target Bcr136
Length = 445
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 519 KPFVLREVERPYKNMLEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDGQIF 578
+P +L EVE YK + +TG +E ++ +LKE AER + +E + +I
Sbjct: 191 RPDLLAEVEENYKELSSFTGSIQE-YXKLTPKLKEKFKANAERVARLLKDENEQANTEII 249
Query: 579 DAWEHVSSESVQTPLEVF 596
+ E++ +++ + +E F
Sbjct: 250 PS-EYIWAKATASAIEKF 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,800,423
Number of Sequences: 62578
Number of extensions: 1641824
Number of successful extensions: 3591
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3572
Number of HSP's gapped (non-prelim): 33
length of query: 1254
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1144
effective length of database: 8,089,757
effective search space: 9254682008
effective search space used: 9254682008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)