Query 000850
Match_columns 1254
No_of_seqs 282 out of 391
Neff 5.6
Searched_HMMs 46136
Date Tue Apr 2 00:31:52 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14566 PTPlike_phytase: Inos 100.0 2.6E-41 5.7E-46 347.1 -1.5 145 88-243 1-149 (149)
2 PF14566 PTPlike_phytase: Inos 100.0 1.4E-40 3.1E-45 341.7 -1.2 146 506-662 1-149 (149)
3 PTZ00242 protein tyrosine phos 97.9 1.3E-05 2.8E-10 84.8 6.1 56 186-241 61-121 (166)
4 PTZ00242 protein tyrosine phos 97.8 7.3E-05 1.6E-09 79.1 8.8 61 594-659 55-120 (166)
5 COG2453 CDC14 Predicted protei 97.8 3E-05 6.6E-10 82.9 5.6 59 186-244 72-131 (180)
6 PTZ00393 protein tyrosine phos 97.7 6.4E-05 1.4E-09 83.2 6.4 57 186-243 137-194 (241)
7 PTZ00393 protein tyrosine phos 97.6 0.00012 2.5E-09 81.2 6.5 51 605-655 137-188 (241)
8 COG2453 CDC14 Predicted protei 97.6 0.0001 2.2E-09 79.0 5.7 61 604-664 71-132 (180)
9 PF05706 CDKN3: Cyclin-depende 97.4 0.00023 4.9E-09 74.9 5.5 71 587-664 87-158 (168)
10 smart00195 DSPc Dual specifici 97.3 0.00038 8.2E-09 70.5 5.9 59 186-244 44-104 (138)
11 PF00782 DSPc: Dual specificit 97.2 0.00034 7.4E-09 70.2 4.9 59 186-244 39-99 (133)
12 smart00195 DSPc Dual specifici 97.2 0.00052 1.1E-08 69.5 6.2 58 605-662 44-103 (138)
13 smart00012 PTPc_DSPc Protein t 97.2 0.00043 9.2E-09 65.7 5.2 57 189-245 5-66 (105)
14 smart00404 PTPc_motif Protein 97.2 0.00043 9.2E-09 65.7 5.2 57 189-245 5-66 (105)
15 PLN02727 NAD kinase 97.2 0.0011 2.4E-08 84.5 9.3 58 186-244 310-367 (986)
16 PF00782 DSPc: Dual specificit 97.1 0.00057 1.2E-08 68.6 5.5 58 605-662 39-98 (133)
17 cd00127 DSPc Dual specificity 97.1 0.00069 1.5E-08 68.2 5.1 59 186-244 47-107 (139)
18 smart00404 PTPc_motif Protein 97.1 0.0011 2.3E-08 62.9 6.1 60 607-666 4-68 (105)
19 smart00012 PTPc_DSPc Protein t 97.1 0.0011 2.3E-08 62.9 6.1 60 607-666 4-68 (105)
20 KOG1720 Protein tyrosine phosp 97.1 0.00043 9.3E-09 74.7 3.7 56 186-241 115-170 (225)
21 PF05706 CDKN3: Cyclin-depende 97.0 0.00099 2.1E-08 70.2 6.2 67 1031-1104 89-158 (168)
22 KOG1720 Protein tyrosine phosp 97.0 0.00099 2.1E-08 72.0 5.8 58 605-664 115-172 (225)
23 TIGR01244 conserved hypothetic 96.9 0.0016 3.4E-08 66.7 6.4 51 186-240 57-107 (135)
24 cd00127 DSPc Dual specificity 96.7 0.0022 4.8E-08 64.6 5.4 57 605-661 47-105 (139)
25 PRK12361 hypothetical protein; 96.5 0.0028 6.2E-08 78.9 5.4 59 186-244 142-201 (547)
26 TIGR01244 conserved hypothetic 96.4 0.006 1.3E-07 62.5 6.4 50 605-658 57-106 (135)
27 PRK12361 hypothetical protein; 96.4 0.0038 8.2E-08 77.8 5.8 57 605-661 142-199 (547)
28 PF04273 DUF442: Putative phos 96.3 0.011 2.3E-07 58.9 7.1 61 170-239 46-106 (110)
29 PF03162 Y_phosphatase2: Tyros 96.3 0.0073 1.6E-07 64.0 6.2 40 46-95 5-44 (164)
30 KOG1719 Dual specificity phosp 96.0 0.0076 1.7E-07 62.5 4.6 66 176-246 70-137 (183)
31 COG5599 PTP2 Protein tyrosine 95.8 0.0047 1E-07 68.9 2.4 48 194-244 193-244 (302)
32 COG5350 Predicted protein tyro 95.7 0.01 2.2E-07 61.5 3.9 56 189-244 62-119 (172)
33 PF04273 DUF442: Putative phos 95.5 0.018 3.8E-07 57.3 5.0 60 590-658 47-106 (110)
34 KOG1719 Dual specificity phosp 95.4 0.022 4.8E-07 59.2 5.4 61 595-660 70-132 (183)
35 KOG0792 Protein tyrosine phosp 95.4 0.0092 2E-07 76.5 2.8 48 195-244 1037-1089(1144)
36 smart00194 PTPc Protein tyrosi 95.1 0.025 5.5E-07 63.5 5.2 54 189-244 163-219 (258)
37 PHA02740 protein tyrosine phos 95.1 0.032 6.9E-07 64.7 6.1 48 195-244 187-247 (298)
38 smart00194 PTPc Protein tyrosi 95.0 0.032 6.8E-07 62.8 5.6 60 605-666 160-222 (258)
39 cd00047 PTPc Protein tyrosine 95.0 0.033 7.2E-07 61.4 5.6 51 194-244 138-192 (231)
40 KOG0791 Protein tyrosine phosp 94.9 0.028 6E-07 65.5 4.8 57 187-245 253-314 (374)
41 COG5350 Predicted protein tyro 94.9 0.034 7.4E-07 57.7 4.8 57 605-661 59-117 (172)
42 COG5599 PTP2 Protein tyrosine 94.8 0.02 4.3E-07 64.1 3.1 52 607-661 187-242 (302)
43 PHA02742 protein tyrosine phos 94.6 0.042 9.1E-07 63.8 5.3 51 194-244 191-255 (303)
44 PLN02727 NAD kinase 94.6 0.053 1.1E-06 69.9 6.5 56 605-661 310-365 (986)
45 PRK15375 pathogenicity island 94.1 0.053 1.1E-06 66.0 4.9 48 194-241 431-489 (535)
46 PHA02740 protein tyrosine phos 94.0 0.087 1.9E-06 61.1 6.1 60 605-666 180-250 (298)
47 cd00047 PTPc Protein tyrosine 93.8 0.12 2.7E-06 56.9 6.7 54 613-666 138-195 (231)
48 KOG0791 Protein tyrosine phosp 93.8 0.1 2.2E-06 61.0 6.1 61 605-665 252-315 (374)
49 PHA02742 protein tyrosine phos 93.7 0.092 2E-06 61.0 5.7 57 608-664 186-256 (303)
50 PHA02747 protein tyrosine phos 93.7 0.099 2.2E-06 61.0 5.9 51 194-244 192-255 (312)
51 KOG0790 Protein tyrosine phosp 93.5 0.05 1.1E-06 64.3 3.0 56 189-244 417-477 (600)
52 KOG0790 Protein tyrosine phosp 93.4 0.07 1.5E-06 63.2 4.0 61 607-667 416-481 (600)
53 KOG1716 Dual specificity phosp 93.4 0.083 1.8E-06 60.8 4.6 60 186-245 121-182 (285)
54 PF13350 Y_phosphatase3: Tyros 93.3 0.13 2.8E-06 54.1 5.5 71 169-241 48-147 (164)
55 PF13350 Y_phosphatase3: Tyros 92.8 0.17 3.7E-06 53.3 5.6 71 588-658 48-145 (164)
56 PHA02746 protein tyrosine phos 92.5 0.14 3.1E-06 59.9 5.1 48 195-244 211-273 (323)
57 PHA02738 hypothetical protein; 92.1 0.22 4.7E-06 58.4 5.8 27 218-244 227-253 (320)
58 KOG1716 Dual specificity phosp 92.1 0.18 3.9E-06 58.0 5.1 57 605-661 121-179 (285)
59 KOG1717 Dual specificity phosp 92.0 0.2 4.4E-06 56.2 5.0 63 604-666 216-280 (343)
60 PHA02746 protein tyrosine phos 91.9 0.27 5.9E-06 57.7 6.2 59 605-665 204-275 (323)
61 PRK15375 pathogenicity island 91.8 0.19 4.1E-06 61.4 4.9 49 611-659 429-488 (535)
62 PHA02738 hypothetical protein; 91.6 0.18 3.9E-06 59.0 4.5 58 608-665 182-255 (320)
63 PHA02747 protein tyrosine phos 91.2 0.22 4.8E-06 58.1 4.6 58 608-665 187-257 (312)
64 KOG0792 Protein tyrosine phosp 91.1 0.25 5.4E-06 64.1 5.2 54 611-664 1034-1090(1144)
65 KOG1717 Dual specificity phosp 89.7 0.38 8.1E-06 54.2 4.4 58 186-243 217-276 (343)
66 PF00102 Y_phosphatase: Protei 89.7 0.39 8.4E-06 52.3 4.6 52 193-246 142-198 (235)
67 KOG4228 Protein tyrosine phosp 89.3 0.23 5E-06 64.9 2.8 61 605-665 983-1046(1087)
68 PF00102 Y_phosphatase: Protei 89.1 0.44 9.5E-06 51.9 4.5 60 605-666 137-199 (235)
69 KOG4228 Protein tyrosine phosp 88.4 0.38 8.1E-06 63.1 3.8 60 607-666 697-759 (1087)
70 KOG1718 Dual specificity phosp 87.7 0.79 1.7E-05 48.7 4.9 59 605-664 60-120 (198)
71 PF03162 Y_phosphatase2: Tyros 85.6 0.68 1.5E-05 49.3 3.3 54 605-661 56-113 (164)
72 KOG2283 Clathrin coat dissocia 83.4 0.69 1.5E-05 56.3 2.5 55 607-662 74-131 (434)
73 KOG2836 Protein tyrosine phosp 81.5 6 0.00013 40.8 7.8 56 186-241 62-120 (173)
74 KOG0789 Protein tyrosine phosp 81.3 2.3 4.9E-05 51.0 5.7 55 188-244 266-325 (415)
75 COG3453 Uncharacterized protei 77.3 12 0.00026 38.1 8.3 81 145-243 28-108 (130)
76 KOG2836 Protein tyrosine phosp 77.0 11 0.00023 39.0 8.0 54 605-658 62-118 (173)
77 KOG0789 Protein tyrosine phosp 76.5 5.3 0.00011 47.9 6.9 56 606-663 265-325 (415)
78 KOG1718 Dual specificity phosp 74.6 4.2 9.1E-05 43.5 4.6 59 186-245 60-120 (198)
79 KOG2283 Clathrin coat dissocia 67.0 3.1 6.7E-05 50.8 1.9 55 189-244 75-132 (434)
80 KOG1530 Rhodanese-related sulf 57.0 17 0.00037 37.6 4.8 65 169-239 43-109 (136)
81 COG3453 Uncharacterized protei 56.5 25 0.00054 35.9 5.7 61 590-662 48-108 (130)
82 KOG1530 Rhodanese-related sulf 53.1 23 0.0005 36.6 5.0 65 587-657 42-108 (136)
83 cd01523 RHOD_Lact_B Member of 43.7 51 0.0011 31.3 5.7 23 211-234 54-76 (100)
84 COG2365 Protein tyrosine/serin 40.1 26 0.00056 39.9 3.4 28 217-244 135-162 (249)
85 KOG1572 Predicted protein tyro 40.0 61 0.0013 36.8 6.1 61 186-246 109-176 (249)
86 KOG0793 Protein tyrosine phosp 34.7 55 0.0012 41.9 5.2 61 608-671 895-960 (1004)
87 cd01518 RHOD_YceA Member of th 34.4 55 0.0012 31.3 4.3 20 634-654 58-77 (101)
88 COG2365 Protein tyrosine/serin 34.0 43 0.00094 38.1 4.0 37 1066-1104 124-161 (249)
89 KOG0793 Protein tyrosine phosp 32.5 38 0.00082 43.2 3.4 54 189-245 895-953 (1004)
90 cd03174 DRE_TIM_metallolyase D 32.5 2.3E+02 0.005 31.7 9.6 81 137-229 121-201 (265)
91 PF01656 CbiA: CobQ/CobB/MinD/ 29.1 55 0.0012 34.5 3.6 24 221-244 2-25 (195)
92 PF04212 MIT: MIT (microtubule 28.3 2.6E+02 0.0057 25.1 7.3 51 737-788 5-61 (69)
93 cd07945 DRE_TIM_CMS Leptospira 27.3 2.4E+02 0.0052 32.8 8.6 112 534-665 103-214 (280)
94 KOG1572 Predicted protein tyro 26.9 1.4E+02 0.0029 34.1 6.1 55 605-661 109-170 (249)
95 PF11521 TFIIE-A_C-term: C-ter 25.9 32 0.00069 33.2 1.0 33 948-990 39-71 (86)
96 TIGR03815 CpaE_hom_Actino heli 25.5 1E+02 0.0022 36.1 5.2 63 175-244 55-120 (322)
97 cd02036 MinD Bacterial cell di 23.8 73 0.0016 33.1 3.3 25 220-244 2-26 (179)
98 PRK07414 cob(I)yrinic acid a,c 23.6 61 0.0013 35.3 2.7 26 217-244 20-45 (178)
99 cd07938 DRE_TIM_HMGL 3-hydroxy 22.7 3.7E+02 0.008 31.1 9.0 55 604-664 161-215 (274)
100 cd03111 CpaE_like This protein 22.5 79 0.0017 30.9 3.1 25 221-245 3-27 (106)
101 KOG2386 mRNA capping enzyme, g 22.5 1E+02 0.0023 37.4 4.6 57 186-243 86-148 (393)
102 COG4981 Enoyl reductase domain 22.4 5.2E+02 0.011 32.9 10.3 139 54-245 62-211 (717)
103 cd01518 RHOD_YceA Member of th 22.2 1.2E+02 0.0027 28.8 4.3 21 215-236 58-78 (101)
104 PLN02746 hydroxymethylglutaryl 22.1 3.3E+02 0.0072 32.8 8.6 105 113-229 148-252 (347)
105 cd07945 DRE_TIM_CMS Leptospira 21.8 3.4E+02 0.0073 31.6 8.5 117 113-249 101-217 (280)
106 cd07947 DRE_TIM_Re_CS Clostrid 21.6 4.8E+02 0.01 30.4 9.6 106 113-230 101-217 (279)
107 cd03174 DRE_TIM_metallolyase D 21.4 3.8E+02 0.0082 30.0 8.7 53 604-662 158-210 (265)
108 cd07938 DRE_TIM_HMGL 3-hydroxy 21.1 5.2E+02 0.011 29.9 9.8 116 116-248 103-218 (274)
109 cd02042 ParA ParA and ParB of 21.1 1E+02 0.0022 29.4 3.5 25 220-244 2-26 (104)
110 KOG4388 Hormone-sensitive lipa 20.9 95 0.0021 39.3 3.8 67 1028-1101 746-812 (880)
111 cd01523 RHOD_Lact_B Member of 20.9 2.3E+02 0.005 26.8 5.8 21 631-652 55-75 (100)
112 cd01522 RHOD_1 Member of the R 20.8 1.2E+02 0.0026 30.1 4.0 28 207-235 52-80 (117)
113 cd01533 4RHOD_Repeat_2 Member 20.4 1.5E+02 0.0032 28.8 4.5 27 207-234 53-81 (109)
No 1
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=100.00 E-value=2.6e-41 Score=347.14 Aligned_cols=145 Identities=44% Similarity=0.746 Sum_probs=119.4
Q ss_pred EEcCCCceEEEcCceeEeecCCCCCCcc-ccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCC---ccccce
Q 000850 88 ISLREEPVVYINGRPFVLRDVGRPFSNL-EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQ---MVDQWE 163 (1254)
Q Consensus 88 vdLREEph~yING~p~s~r~~~~~~~N~-~~~Gis~~~ve~~E~rLk~dil~ea~~~~g~ilv~~e~~~g~---~~~~w~ 163 (1254)
|||||||||||||.|||||+..++.+|+ .+.|++++++|++|.+||+||+.+++++++.+++|++..++. +.+.|+
T Consensus 1 vdLReE~h~~ing~p~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~ 80 (149)
T PF14566_consen 1 VDLREEPHGYINGRPYSWREPDNPANNIKSYPGISADEVEQLEERLKEDILKEAKRFGGRILVHDEDEDGVVSTVIEVWE 80 (149)
T ss_dssp EEEE-S-EEEETTEEEEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCEEEEECEECCCTCCCCEECEEEEE-S-E--
T ss_pred CcCCcCCEEEECCcEeeecccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccchhhhH
Confidence 7999999999999999999998777776 678999999999999999999999999999999999987773 233333
Q ss_pred eeccCcccchHHHHHHhhhcCccceEEEeecCCCCCCCCCchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000850 164 PVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1254)
Q Consensus 164 ~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 243 (1254)
.+|++++++.. +++|+|||||||.+|++++||+||++++++|+++||||||++|+||||||||||+||+
T Consensus 81 ------~~~e~~~~~~~-----g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 81 ------EVTEEELVEGN-----GLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -------E-HHHHHHHT-----T-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcC-----CceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888865 6779999999999999999999999999999999999999999999999999999996
No 2
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=100.00 E-value=1.4e-40 Score=341.71 Aligned_cols=146 Identities=45% Similarity=0.764 Sum_probs=122.4
Q ss_pred EEccccceEEECCeeeeecccCCccccchhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeecCCC---ccccccc
Q 000850 506 HNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDG---QIFDAWE 582 (1254)
Q Consensus 506 vdLREEpv~yinG~p~slR~~~~~~~N~~~~~Gis~~~VE~~E~~Lk~dil~e~~~~~g~~l~~~e~~~~---~~~~~we 582 (1254)
|||||||||||||+|||||+.+++..|+..+.|++++++|++|.+||+||+.+++..+|.+++|++...+ .+.++|+
T Consensus 1 vdLReE~h~~ing~p~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~ 80 (149)
T PF14566_consen 1 VDLREEPHGYINGRPYSWREPDNPANNIKSYPGISADEVEQLEERLKEDILKEAKRFGGRILVHDEDEDGVVSTVIEVWE 80 (149)
T ss_dssp EEEE-S-EEEETTEEEEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCEEEEECEECCCTCCCCEECEEEEE-S-E--
T ss_pred CcCCcCCEEEECCcEeeecccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccchhhhH
Confidence 7999999999999999999999998887788999999999999999999999999999999999988777 4566665
Q ss_pred cccCCCccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHH
Q 000850 583 HVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1254)
Q Consensus 583 ~v~~~~v~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~ 662 (1254)
.+|++++.+.. |++|+|||+|||+||.+++||+|+++++++|+++|||||||+|+|||||||||++|+.
T Consensus 81 ------~~~e~~~~~~~-----g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 81 ------EVTEEELVEGN-----GLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -------E-HHHHHHHT-----T-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcC-----CceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 68888888876 9999999999999999999999999999999999999999999999999999999984
No 3
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=97.93 E-value=1.3e-05 Score=84.80 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=49.6
Q ss_pred cceEEEeecCCCCCCCCCchHHHHHHhhcC-----CCCCeEEEEcCCCCCchHHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATL 241 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~FhCq~G~GRTTt~Mvm~~L 241 (1254)
++.|+++|++|+..|..++++.|++++.+. .++..+++||.+|.|||-|+++++.|
T Consensus 61 gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~ 121 (166)
T PTZ00242 61 GIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALV 121 (166)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999999999752 46889999999999999999998844
No 4
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=97.79 E-value=7.3e-05 Score=79.12 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=52.5
Q ss_pred HHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhc-----CCCCeEEEecCCCCCcchhHHHHHH
Q 000850 594 EVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASA-----SKDTAFVFNCQMGRGRTTTGTVIAC 659 (1254)
Q Consensus 594 Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~-----~~~~~l~F~Cq~G~GRTTt~Mvi~~ 659 (1254)
+.+... |+.|+++|++|+..|..++++.|++++... .++..+++||.+|.|||-|+++++.
T Consensus 55 ~~~~~~-----gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL 120 (166)
T PTZ00242 55 ELLEKN-----GIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALAL 120 (166)
T ss_pred HHHHHC-----CCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 455544 899999999999999999999999988763 3588999999999999999888874
No 5
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.76 E-value=3e-05 Score=82.90 Aligned_cols=59 Identities=27% Similarity=0.458 Sum_probs=53.6
Q ss_pred cceEEEeecCCCCCCCCCchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
++.+..+|+.|+..|+.+++|.++.++.+. .++..+++||++|.|||-|-++.+.|...
T Consensus 72 ~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~ 131 (180)
T COG2453 72 GIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYG 131 (180)
T ss_pred CceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHc
Confidence 455999999999999999999999999976 45669999999999999999999999884
No 6
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.67 E-value=6.4e-05 Score=83.19 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=47.7
Q ss_pred cceEEEeecCCCCCCCCCchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 243 (1254)
+|.|+++|++|+.+|.++.++.|++++... ..+..+.+||.+|.|||-|..+.| ||.
T Consensus 137 GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aay-LI~ 194 (241)
T PTZ00393 137 GINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIV-LIE 194 (241)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH-HHH
Confidence 455999999999999999999999999753 467789999999999998766555 444
No 7
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.56 E-value=0.00012 Score=81.18 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=45.5
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc-CCCCeEEEecCCCCCcchhHH
Q 000850 605 PIKYARVPITDGKAPKTSDFDMLAVNIASA-SKDTAFVFNCQMGRGRTTTGT 655 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~-~~~~~l~F~Cq~G~GRTTt~M 655 (1254)
|+.|+++|++|+.+|..+.+++|++++... ..+..+.+||.+|.|||-|..
T Consensus 137 GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~ 188 (241)
T PTZ00393 137 GINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLA 188 (241)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 999999999999999999999999999765 366789999999999996543
No 8
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.55 E-value=0.0001 Score=78.97 Aligned_cols=61 Identities=31% Similarity=0.371 Sum_probs=55.0
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000850 604 FPIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1254)
Q Consensus 604 ~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~ 664 (1254)
.++.+..+|+.|+..|+.++++.++.++..+. .+.-+++||++|.|||-|-++-++|....
T Consensus 71 ~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~ 132 (180)
T COG2453 71 DGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGG 132 (180)
T ss_pred CCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcC
Confidence 38899999999999999999999999999885 55599999999999999999999888543
No 9
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.38 E-value=0.00023 Score=74.92 Aligned_cols=71 Identities=30% Similarity=0.399 Sum_probs=45.2
Q ss_pred CCccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000850 587 ESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1254)
Q Consensus 587 ~~v~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~ 664 (1254)
-.|-+..+.+++. |+.++++||+|..+|..+..-+++..+.... .+.-+++||..|.||| +||.+||+...
T Consensus 87 l~Vp~L~~~~~~~-----Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRt--GlvAAcLLl~L 158 (168)
T PF05706_consen 87 LGVPDLGEAAQAR-----GIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRT--GLVAACLLLEL 158 (168)
T ss_dssp TT-TTHHHHHHHT-----T-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHH--HHHHHHHHHHH
T ss_pred cCCccHHHHHHHc-----CCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHH--HHHHHHHHHHH
Confidence 3456788888887 9999999999999997665555665555443 6788999999999997 77888888543
No 10
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.29 E-value=0.00038 Score=70.51 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=48.6
Q ss_pred cceEEEeecCCC-CCCCCCchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 186 LVDYERVPVTDE-KSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 186 ~v~Y~RiPitd~-~~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
++.|.++|+.|+ ..|..+.++..++|+... ..+..+.+||.+|.|||.+++++|.|...
T Consensus 44 ~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 44 GFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred CCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 456999999994 556667888888888764 46778999999999999999999977654
No 11
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.23 E-value=0.00034 Score=70.21 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=52.3
Q ss_pred cceEEEeecCC-CCCCCCCchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 186 LVDYERVPVTD-EKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 186 ~v~Y~RiPitd-~~~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
++.|.++|+.| ...|..+.++.+++|+.+. .++..+.+||++|.|||.+.+++|.|-+.
T Consensus 39 ~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 99 (133)
T PF00782_consen 39 GIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKN 99 (133)
T ss_dssp TSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHc
Confidence 56699999999 7888899999999999874 46789999999999999999998887765
No 12
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.23 E-value=0.00052 Score=69.50 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=49.0
Q ss_pred CceEEEeecCC-CCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHH
Q 000850 605 PIKYARVPITD-GKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1254)
Q Consensus 605 gl~Y~RIPitD-~~aP~~~d~D~fi~~v~~~~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li~ 662 (1254)
++.|.++|+.| ...|..+.+++.++++.... .+..+.+||.+|.|||.+.++.+.|..
T Consensus 44 ~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 44 GFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred CCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 88999999999 46677778888888887764 667899999999999999888886653
No 13
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.23 E-value=0.00043 Score=65.66 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=43.7
Q ss_pred EEEeecCCCCCCCC-CchHHHHHHhhcCC----CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000850 189 YERVPVTDEKSPKE-QDFDILVDKISQTD----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1254)
Q Consensus 189 Y~RiPitd~~~P~~-~~iD~fi~~v~~~p----~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 245 (1254)
|+-...+|+..|+. ++|-.|++.+++.. .+.++++||.+|.|||.++++++.++..-
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 55566778888877 56666666665432 36799999999999999999988887753
No 14
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.23 E-value=0.00043 Score=65.66 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=43.7
Q ss_pred EEEeecCCCCCCCC-CchHHHHHHhhcCC----CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000850 189 YERVPVTDEKSPKE-QDFDILVDKISQTD----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1254)
Q Consensus 189 Y~RiPitd~~~P~~-~~iD~fi~~v~~~p----~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 245 (1254)
|+-...+|+..|+. ++|-.|++.+++.. .+.++++||.+|.|||.++++++.++..-
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 55566778888877 56666666665432 36799999999999999999988887753
No 15
>PLN02727 NAD kinase
Probab=97.16 E-value=0.0011 Score=84.50 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=50.2
Q ss_pred cceEEEeecCCCCCCCCCchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
+|.|+-||+++..+|.++++++|.+++++. ...++.+||..|.+||.++.++|.-...
T Consensus 310 GL~yVhIPVs~~~apt~EqVe~fa~~l~~s-lpkPVLvHCKSGarRAGamvA~yl~~~~ 367 (986)
T PLN02727 310 KIEVVKIPVEVRTAPSAEQVEKFASLVSDS-SKKPIYLHSKEGVWRTSAMVSRWKQYMT 367 (986)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHhh-cCCCEEEECCCCCchHHHHHHHHHHHHc
Confidence 566999999999999999999999999542 2668999999999999999999876443
No 16
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.15 E-value=0.00057 Score=68.57 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=51.5
Q ss_pred CceEEEeecCC-CCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHH
Q 000850 605 PIKYARVPITD-GKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1254)
Q Consensus 605 gl~Y~RIPitD-~~aP~~~d~D~fi~~v~~~~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li~ 662 (1254)
++.|.++|+.| ...|..+.++.+.+++.... ++..+.+||++|.|||.+.++.|-|..
T Consensus 39 ~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 98 (133)
T PF00782_consen 39 GIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK 98 (133)
T ss_dssp TSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence 88999999999 88999999999999998864 778899999999999999877766653
No 17
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.06 E-value=0.00069 Score=68.24 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=46.5
Q ss_pred cceEEEeecCCCC-CCCCCchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 186 LVDYERVPVTDEK-SPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 186 ~v~Y~RiPitd~~-~P~~~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
++.|..+|+.|.. .+.+..++.+++|+... ..+..+.+||.+|.|||.++++.+.|...
T Consensus 47 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 47 DFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred CceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 4459999999987 33456778888888754 34678999999999999999987776654
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.06 E-value=0.0011 Score=62.90 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=46.5
Q ss_pred eEEEeecCCCCCCCc-ccHHHHHHHHHhcC----CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000850 607 KYARVPITDGKAPKT-SDFDMLAVNIASAS----KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1254)
Q Consensus 607 ~Y~RIPitD~~aP~~-~d~D~fi~~v~~~~----~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~ 666 (1254)
.|+=...+|+..|.. ++|-.|+..++... .+.++++||.+|.|||.++.+++.++....+
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~ 68 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLES 68 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHh
Confidence 455566778889988 67777777776543 3679999999999999999888877765543
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.06 E-value=0.0011 Score=62.90 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=46.5
Q ss_pred eEEEeecCCCCCCCc-ccHHHHHHHHHhcC----CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000850 607 KYARVPITDGKAPKT-SDFDMLAVNIASAS----KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1254)
Q Consensus 607 ~Y~RIPitD~~aP~~-~d~D~fi~~v~~~~----~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~ 666 (1254)
.|+=...+|+..|.. ++|-.|+..++... .+.++++||.+|.|||.++.+++.++....+
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~ 68 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLES 68 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHh
Confidence 455566778889988 67777777776543 3679999999999999999888877765543
No 20
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=97.05 E-value=0.00043 Score=74.70 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=48.5
Q ss_pred cceEEEeecCCCCCCCCCchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATL 241 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~L 241 (1254)
++.-+++|+.|...|+++.++.||+.+-+.-+.-.+-+||.+|.|||-+-.+++.|
T Consensus 115 Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lm 170 (225)
T KOG1720|consen 115 GIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLM 170 (225)
T ss_pred CceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHH
Confidence 45589999999999999999999999998877999999999999999654444433
No 21
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.05 E-value=0.00099 Score=70.21 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHhcCCCeeEeeecCCCCcCCChhhHHHHHHhhc---CCCCeeEEeccCCCCcchhHHHHHHHHHhh
Q 000850 1031 VKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAIQYCKD---DSAGCYLFVSHTGFGGVAYAMAIICLRLDA 1104 (1254)
Q Consensus 1031 v~Tp~Evy~~~~~~g~~v~Y~RiPitde~aP~~~~fd~l~~~~~---~~~~~~vfnCqmGrGrtTt~Mvia~L~~~~ 1104 (1254)
|-+..|.|.+ .++.++++||.|..+|..+.+-+++..+. ..+...+.-|.-|.||| |||.|||++-.
T Consensus 89 Vp~L~~~~~~-----~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRt--GlvAAcLLl~L 158 (168)
T PF05706_consen 89 VPDLGEAAQA-----RGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRT--GLVAACLLLEL 158 (168)
T ss_dssp -TTHHHHHHH-----TT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHH--HHHHHHHHHHH
T ss_pred CccHHHHHHH-----cCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHH--HHHHHHHHHHH
Confidence 4566777777 67999999999999997665555555554 67889999999999999 99999999654
No 22
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=97.00 E-value=0.00099 Score=72.01 Aligned_cols=58 Identities=29% Similarity=0.492 Sum_probs=52.9
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000850 605 PIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~ 664 (1254)
|+.-+++|++|.+.|+++.++.|++.+-...++..+-+||.+|.||| +|+|+|.|...
T Consensus 115 Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRT--G~liAc~lmy~ 172 (225)
T KOG1720|consen 115 GIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRT--GTLIACYLMYE 172 (225)
T ss_pred CceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCch--hHHHHHHHHHH
Confidence 89999999999999999999999999999888999999999999998 66777776555
No 23
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.94 E-value=0.0016 Score=66.73 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=42.8
Q ss_pred cceEEEeecCCCCCCCCCchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIAT 240 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~ 240 (1254)
++.|+.||+.... +++++++.|..++.+.| .+++|||.+|. ||..++.++.
T Consensus 57 gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~--~pvL~HC~sG~-Rt~~l~al~~ 107 (135)
T TIGR01244 57 GVTYHHQPVTAGD-ITPDDVETFRAAIGAAE--GPVLAYCRSGT-RSSLLWGFRQ 107 (135)
T ss_pred CCeEEEeecCCCC-CCHHHHHHHHHHHHhCC--CCEEEEcCCCh-HHHHHHHHHH
Confidence 5669999999765 78899999999998763 67999999999 9888776653
No 24
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=96.71 E-value=0.0022 Score=64.57 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=45.5
Q ss_pred CceEEEeecCCCC-CCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHH
Q 000850 605 PIKYARVPITDGK-APKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLL 661 (1254)
Q Consensus 605 gl~Y~RIPitD~~-aP~~~d~D~fi~~v~~~~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li 661 (1254)
++.|..+|+.|.. .+....++.+++++.... .+..+.+||.+|.|||.++++.+.|.
T Consensus 47 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~ 105 (139)
T cd00127 47 DFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105 (139)
T ss_pred CceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHH
Confidence 8899999999987 334456777788887643 46789999999999999988766555
No 25
>PRK12361 hypothetical protein; Provisional
Probab=96.49 E-value=0.0028 Score=78.92 Aligned_cols=59 Identities=24% Similarity=0.439 Sum_probs=51.5
Q ss_pred cceEEEeecCCCCCCCCCchHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKEQDFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p-~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
++.|.+||+.|+..|+.++++..++|+.+.- .+..+.+||.+|+|||.+.++.|.|.+.
T Consensus 142 ~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 142 DIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred CceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 3569999999999999999999999998653 4678999999999999999999866554
No 26
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.42 E-value=0.006 Score=62.49 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=41.7
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHH
Q 000850 605 PIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIA 658 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~ 658 (1254)
|+.|+.||+.... +.++++.+|..++.+.+ .+++|||.+|+ ||...+.++
T Consensus 57 gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~--~pvL~HC~sG~-Rt~~l~al~ 106 (135)
T TIGR01244 57 GVTYHHQPVTAGD-ITPDDVETFRAAIGAAE--GPVLAYCRSGT-RSSLLWGFR 106 (135)
T ss_pred CCeEEEeecCCCC-CCHHHHHHHHHHHHhCC--CCEEEEcCCCh-HHHHHHHHH
Confidence 9999999999754 78899999999997653 66999999999 977665554
No 27
>PRK12361 hypothetical protein; Provisional
Probab=96.39 E-value=0.0038 Score=77.83 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=50.3
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHH
Q 000850 605 PIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLL 661 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li 661 (1254)
++.|.+||+.|+..|..+++++.++++.+.. .+..+.+||.+|+|||.+.++.|.|.
T Consensus 142 ~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 142 DIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLC 199 (547)
T ss_pred CceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHH
Confidence 7899999999999999999999999998764 56789999999999999977777554
No 28
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.30 E-value=0.011 Score=58.87 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=43.1
Q ss_pred ccchHHHHHHhhhcCccceEEEeecCCCCCCCCCchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHH
Q 000850 170 VKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIA 239 (1254)
Q Consensus 170 V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~ 239 (1254)
...+++.+++. +|.|+-|||+.. .++++++++|.+.+.++|+ ++++||..|. |.+..+.++
T Consensus 46 ~~~~~~~a~~~-----Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~--Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 46 SAEEAAAAEAL-----GLQYVHIPVDGG-AITEEDVEAFADALESLPK--PVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HHCHHHHHHHC-----T-EEEE----TT-T--HHHHHHHHHHHHTTTT--SEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCeEEEeecCCC-CCCHHHHHHHHHHHHhCCC--CEEEECCCCh-hHHHHHHHH
Confidence 34567777776 666999999986 4899999999999999864 7999999997 887777665
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=96.27 E-value=0.0073 Score=64.01 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=26.1
Q ss_pred CCccCCCCcceeeccCCCHHHHHHHHHHhccCCCCCcceEEEEEcCCCce
Q 000850 46 PNYRQADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPV 95 (1254)
Q Consensus 46 PNfR~~~~l~V~G~aQPS~~gl~~vl~~L~~~~~g~~~~ivwvdLREEph 95 (1254)
.||-.+.. .||=||||+..++.- |+.|+=+ .+|+||.|+.
T Consensus 5 ~nF~~V~~-~vYRS~~P~~~n~~f-L~~L~LK--------TII~L~~e~~ 44 (164)
T PF03162_consen 5 LNFGMVEP-GVYRSAQPTPANFPF-LERLGLK--------TIINLRPEPP 44 (164)
T ss_dssp TT-EEEET-TEEEESS--HHHHHH-HHHHT-S--------EEEE--SS--
T ss_pred ccccCCCC-CccCCCCCChhhHHH-HHHCCCc--------eEEEecCCCC
Confidence 49999977 999999999999985 5567544 7888888764
No 30
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.01 E-value=0.0076 Score=62.45 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=54.2
Q ss_pred HHHHhhhcCccceEEEeecCCC-CCCCCCchHHHHHHhh-cCCCCCeEEEEcCCCCCchHHHHHHHHHHHHhh
Q 000850 176 VYEELQVEGYLVDYERVPVTDE-KSPKEQDFDILVDKIS-QTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNR 246 (1254)
Q Consensus 176 v~~~~~~~g~~v~Y~RiPitd~-~~P~~~~iD~fi~~v~-~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~ 246 (1254)
.|+.. +|...+||.+|- .+|.-++|-.=++|+. .++.+...-+||.||+||++|-..+|.|..+.+
T Consensus 70 ~wk~~-----giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~w 137 (183)
T KOG1719|consen 70 LWKNY-----GIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNW 137 (183)
T ss_pred HHHhc-----cceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCC
Confidence 56644 777999999986 5788899999899985 567788999999999999999888887766543
No 31
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.84 E-value=0.0047 Score=68.91 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=38.4
Q ss_pred cCCCCCCCCCchHHHHHHhhcC---C-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 194 VTDEKSPKEQDFDILVDKISQT---D-LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 194 itd~~~P~~~~iD~fi~~v~~~---p-~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
=.|...| ++-.+.++++++ | .+.++++||.||.|||-|||++-.|++.
T Consensus 193 W~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 193 WVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred ccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 4566777 666666666655 4 6789999999999999999999888874
No 32
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=95.70 E-value=0.01 Score=61.51 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=46.3
Q ss_pred EEEeecCCC--CCCCCCchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 189 YERVPVTDE--KSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 189 Y~RiPitd~--~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
+.-|-.+|. .+|.++-++..++|+.+.|..+.+++||.+|++|+|.+..++.|...
T Consensus 62 fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala 119 (172)
T COG5350 62 FNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALA 119 (172)
T ss_pred eccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhc
Confidence 444444444 58999999999999999999999999999999999988877766543
No 33
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.54 E-value=0.018 Score=57.31 Aligned_cols=60 Identities=22% Similarity=0.404 Sum_probs=42.6
Q ss_pred cCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHH
Q 000850 590 QTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIA 658 (1254)
Q Consensus 590 ~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~ 658 (1254)
..+++..+.. |+.|+-|||+.. .+.++++++|.+.+.++++ .+++||..|. |.+..+.++
T Consensus 47 ~~~~~~a~~~-----Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~--Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 47 AEEAAAAEAL-----GLQYVHIPVDGG-AITEEDVEAFADALESLPK--PVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HCHHHHHHHC-----T-EEEE----TT-T--HHHHHHHHHHHHTTTT--SEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHHHHHHc-----CCeEEEeecCCC-CCCHHHHHHHHHHHHhCCC--CEEEECCCCh-hHHHHHHHH
Confidence 4567777777 999999999985 6899999999999999764 6999999997 777666654
No 34
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.44 E-value=0.022 Score=59.16 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=49.2
Q ss_pred HHhcccCCCCCceEEEeecCCC-CCCCcccHHHHHHHHHh-cCCCCeEEEecCCCCCcchhHHHHHHH
Q 000850 595 VFKCLEDDGFPIKYARVPITDG-KAPKTSDFDMLAVNIAS-ASKDTAFVFNCQMGRGRTTTGTVIACL 660 (1254)
Q Consensus 595 v~~~~~~~~~gl~Y~RIPitD~-~aP~~~d~D~fi~~v~~-~~~~~~l~F~Cq~G~GRTTt~Mvi~~L 660 (1254)
.++.. |+.+.+||.+|. .+|.-+++..=++|+.+ ++.+-..-+||.+||||+||-..+|.|
T Consensus 70 ~wk~~-----giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLm 132 (183)
T KOG1719|consen 70 LWKNY-----GIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLM 132 (183)
T ss_pred HHHhc-----cceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhh
Confidence 55554 999999999997 68999999999999965 456678889999999999984444433
No 35
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=95.36 E-value=0.0092 Score=76.52 Aligned_cols=48 Identities=25% Similarity=0.467 Sum_probs=35.3
Q ss_pred CCCCCCCCCchHHHHHHhhcC-----CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 195 TDEKSPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 195 td~~~P~~~~iD~fi~~v~~~-----p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
+||+-| +|.+.|++|+..+ ..+++|++||.+|+|||-+-..|=++|..
T Consensus 1037 PDHg~P--~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~l 1089 (1144)
T KOG0792|consen 1037 PDHGVP--DDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCL 1089 (1144)
T ss_pred ccCCCC--CChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHH
Confidence 455544 5677777776543 25789999999999999987777666654
No 36
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=95.14 E-value=0.025 Score=63.54 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=42.2
Q ss_pred EEEeecCCCCCC-CCCchHHHHHHhhcCCC--CCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 189 YERVPVTDEKSP-KEQDFDILVDKISQTDL--NTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 189 Y~RiPitd~~~P-~~~~iD~fi~~v~~~p~--~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
|..-| |++.| ..+.+-.|+..++.... ..++++||.+|.|||.++.++..++..
T Consensus 163 y~~W~--d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~ 219 (258)
T smart00194 163 YTNWP--DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQ 219 (258)
T ss_pred eCCCC--CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHH
Confidence 54444 88888 45677777777776543 689999999999999999988877764
No 37
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.13 E-value=0.032 Score=64.66 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=35.4
Q ss_pred CCCCCCCCCchHHHHHHhhcC-------------CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 195 TDEKSPKEQDFDILVDKISQT-------------DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 195 td~~~P~~~~iD~fi~~v~~~-------------p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
+|++.|. +.+.|++|++.. ....++++||.+|.|||-+|.++-.++..
T Consensus 187 Pd~gvP~--~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~ 247 (298)
T PHA02740 187 PADGFSH--DPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATE 247 (298)
T ss_pred CCCCcCC--CHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHH
Confidence 4676664 456677765321 23579999999999999999998877764
No 38
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=95.04 E-value=0.032 Score=62.76 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=46.7
Q ss_pred CceEEEeecCCCCCC-CcccHHHHHHHHHhcCC--CCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000850 605 PIKYARVPITDGKAP-KTSDFDMLAVNIASASK--DTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP-~~~d~D~fi~~v~~~~~--~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~ 666 (1254)
.+.|..-| |+..| ..+++-+|+..++.... ..++++||.+|.|||.++.++..++.....
T Consensus 160 ~~~y~~W~--d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~ 222 (258)
T smart00194 160 HYHYTNWP--DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEA 222 (258)
T ss_pred EEeeCCCC--CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHH
Confidence 45555555 88999 55778888888877643 789999999999999999988877765544
No 39
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=95.01 E-value=0.033 Score=61.43 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=42.2
Q ss_pred cCCCCCCCC-CchHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 194 VTDEKSPKE-QDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 194 itd~~~P~~-~~iD~fi~~v~~~---p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
-+|+..|.. +++-.|++.++.. +.+.++++||.+|.|||-++.++..++..
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~ 192 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQR 192 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 568888887 7888888888766 35789999999999999999888777765
No 40
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=94.92 E-value=0.028 Score=65.54 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=44.6
Q ss_pred ceEEEeecCCCCCCCCCchHHHHHHhh---cCC--CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000850 187 VDYERVPVTDEKSPKEQDFDILVDKIS---QTD--LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1254)
Q Consensus 187 v~Y~RiPitd~~~P~~~~iD~fi~~v~---~~p--~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 245 (1254)
.++++..-+|++.| +.-+.+++|++ ... ..+|+++||.+|+|||-||++|=-|++.-
T Consensus 253 r~f~y~~wPd~gvp--~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~ 314 (374)
T KOG0791|consen 253 RHFHYTAWPDFGVP--SSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQI 314 (374)
T ss_pred EEEEEeeccccCCC--CCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHh
Confidence 46888899999999 44444555544 433 35699999999999999999999999853
No 41
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=94.90 E-value=0.034 Score=57.71 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=49.0
Q ss_pred CceEEEeecCCC--CCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHH
Q 000850 605 PIKYARVPITDG--KAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLL 661 (1254)
Q Consensus 605 gl~Y~RIPitD~--~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li 661 (1254)
.+.+.-|-.+|. .+|.++-++..++|+.+.|..+.+++||.+|.+|+|.+-.++-|.
T Consensus 59 ~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~a 117 (172)
T COG5350 59 TLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALA 117 (172)
T ss_pred eEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHh
Confidence 556666666666 489999999999999999999999999999999999887776665
No 42
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.83 E-value=0.02 Score=64.14 Aligned_cols=52 Identities=27% Similarity=0.405 Sum_probs=41.8
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHHHhc---C-CCCeEEEecCCCCCcchhHHHHHHHH
Q 000850 607 KYARVPITDGKAPKTSDFDMLAVNIASA---S-KDTAFVFNCQMGRGRTTTGTVIACLL 661 (1254)
Q Consensus 607 ~Y~RIPitD~~aP~~~d~D~fi~~v~~~---~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li 661 (1254)
+|.=.-=.|++.| ++-.+.++++++ | .+..+++||.+|.|||-|||++-.|+
T Consensus 187 hf~y~nW~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll 242 (302)
T COG5599 187 HFQYINWVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILL 242 (302)
T ss_pred EEEecCccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHH
Confidence 3444556799999 777777777765 4 67899999999999999999998887
No 43
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=94.62 E-value=0.042 Score=63.78 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=35.8
Q ss_pred cCCCCCCC-CCchHHHHHHhhcC-------------CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 194 VTDEKSPK-EQDFDILVDKISQT-------------DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 194 itd~~~P~-~~~iD~fi~~v~~~-------------p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
=+|++.|. +..|=.|+..++.. +.+.++++||.+|.|||-+|.++..+|..
T Consensus 191 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~ 255 (303)
T PHA02742 191 WPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISK 255 (303)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHH
Confidence 34777764 34455555555431 12479999999999999999998877764
No 44
>PLN02727 NAD kinase
Probab=94.61 E-value=0.053 Score=69.85 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=48.1
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHH
Q 000850 605 PIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLL 661 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li 661 (1254)
||.|+-|||++..+|.++++++|.+.++... ..++.+||..|.+||-+..++|--.
T Consensus 310 GL~yVhIPVs~~~apt~EqVe~fa~~l~~sl-pkPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 310 KIEVVKIPVEVRTAPSAEQVEKFASLVSDSS-KKPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHhhc-CCCEEEECCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999995522 3578999999999998877777543
No 45
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=94.14 E-value=0.053 Score=66.01 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=33.3
Q ss_pred cCCCCCCCC-CchHHHHHHhhcCCC----------CCeEEEEcCCCCCchHHHHHHHHH
Q 000850 194 VTDEKSPKE-QDFDILVDKISQTDL----------NTEVIFNCQMGRGRTTTGMVIATL 241 (1254)
Q Consensus 194 itd~~~P~~-~~iD~fi~~v~~~p~----------~~~l~FhCq~G~GRTTt~Mvm~~L 241 (1254)
=+||+.|.. +.+..|+..++.... ....++||.+|.|||-||++++.|
T Consensus 431 WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~ll 489 (535)
T PRK15375 431 WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVL 489 (535)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHH
Confidence 377776654 346667766665421 112389999999999999999764
No 46
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=93.97 E-value=0.087 Score=61.11 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=40.6
Q ss_pred CceEEEeecCCCCCCC-cccHHHHHHHHHh---------c-CCCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000850 605 PIKYARVPITDGKAPK-TSDFDMLAVNIAS---------A-SKDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~-~~d~D~fi~~v~~---------~-~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~ 666 (1254)
++.|..= ||++.|. +..|-.|+..++. . ...+++++||.+|.|||-||.++-.++.+...
T Consensus 180 Hfqyt~W--Pd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~ 250 (298)
T PHA02740 180 HFQYTAW--PADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDK 250 (298)
T ss_pred EEeecCC--CCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHh
Confidence 4445444 5888884 3455555544432 1 24578999999999999999998877765543
No 47
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=93.80 E-value=0.12 Score=56.94 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=43.5
Q ss_pred cCCCCCCCc-ccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000850 613 ITDGKAPKT-SDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1254)
Q Consensus 613 itD~~aP~~-~d~D~fi~~v~~~---~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~ 666 (1254)
-+|+..|.. +++-+|+..++.. ....++++||.+|.|||-++.++..++.....
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~ 195 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEA 195 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHh
Confidence 468888887 7888888888776 35779999999999999999887777655443
No 48
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=93.77 E-value=0.1 Score=60.95 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=47.4
Q ss_pred CceEEEeecCCCCCCCcc-cHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000850 605 PIKYARVPITDGKAPKTS-DFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 665 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~-d~D~fi~~v~~~~--~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~ 665 (1254)
=..+++...+||..|.+. ..-+|+..++... ..+|+++||.+|.|||-||+++=-|++..-
T Consensus 252 ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~ 315 (374)
T KOG0791|consen 252 IRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQID 315 (374)
T ss_pred eEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhc
Confidence 347888999999999432 4455666666554 467999999999999999999999986653
No 49
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=93.69 E-value=0.092 Score=60.99 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=40.8
Q ss_pred EEEeecCCCCCCC-cccHHHHHHHHHhc-------------CCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000850 608 YARVPITDGKAPK-TSDFDMLAVNIASA-------------SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1254)
Q Consensus 608 Y~RIPitD~~aP~-~~d~D~fi~~v~~~-------------~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~ 664 (1254)
|+=.-=||++.|. +..|-.|+..++.. ...+++++||.+|.|||-||.++..++...
T Consensus 186 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~ 256 (303)
T PHA02742 186 FAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKY 256 (303)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHH
Confidence 3333445888885 45677777666542 124789999999999999999988777544
No 50
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=93.68 E-value=0.099 Score=60.96 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=34.5
Q ss_pred cCCCCCCCC-CchHHHHHHhhcC---------C---CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 194 VTDEKSPKE-QDFDILVDKISQT---------D---LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 194 itd~~~P~~-~~iD~fi~~v~~~---------p---~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
=+|++.|.. ..|=.|+..++.. | ...++++||.+|.|||-+|.++-.++..
T Consensus 192 Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~ 255 (312)
T PHA02747 192 WFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQ 255 (312)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHH
Confidence 347777753 3444454444321 1 2369999999999999999988777654
No 51
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=93.46 E-value=0.05 Score=64.31 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=41.6
Q ss_pred EEEeecCCCCCCCC-CchHHHHHHhh----cCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 189 YERVPVTDEKSPKE-QDFDILVDKIS----QTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 189 Y~RiPitd~~~P~~-~~iD~fi~~v~----~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
|+=+.=+||+-|.+ --+=.|++=|. +++.-.++++||.||+|||-||+||-.||-.
T Consensus 417 yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~ 477 (600)
T KOG0790|consen 417 YHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQ 477 (600)
T ss_pred hheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHH
Confidence 88888999999974 33444444443 2335569999999999999999998776654
No 52
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=93.43 E-value=0.07 Score=63.17 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=47.4
Q ss_pred eEEEeecCCCCCCCcc-cHHHHHHHHHh---c-CCCCeEEEecCCCCCcchhHHHHHHHHHHHHhc
Q 000850 607 KYARVPITDGKAPKTS-DFDMLAVNIAS---A-SKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDY 667 (1254)
Q Consensus 607 ~Y~RIPitD~~aP~~~-d~D~fi~~v~~---~-~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~~ 667 (1254)
.|+=+.-|||+-|.+. .+-.|++-|.. . ....++++||.+|.|||-|++||-.|+-.....
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~ 481 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREK 481 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhc
Confidence 5777888999999765 56667766632 2 355689999999999999999998888666553
No 53
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.37 E-value=0.083 Score=60.78 Aligned_cols=60 Identities=27% Similarity=0.440 Sum_probs=45.9
Q ss_pred cceEEEeecCCCCCCCC-CchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000850 186 LVDYERVPVTDEKSPKE-QDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~-~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 245 (1254)
.++|.+||+.|.-.++- ..|+.-+.|+..+ ..+.-+.+||++|.+|+++..+.|.|....
T Consensus 121 ~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~ 182 (285)
T KOG1716|consen 121 GIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEG 182 (285)
T ss_pred CceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcC
Confidence 45699999999554442 2366666666544 368899999999999999999998887753
No 54
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.26 E-value=0.13 Score=54.11 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=33.3
Q ss_pred cccchHHHHHHhhhcCccceEEEeecCCCCCCCCCchHH-----------------------------HHHHhhcCCCCC
Q 000850 169 SVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDI-----------------------------LVDKISQTDLNT 219 (1254)
Q Consensus 169 ~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~-----------------------------fi~~v~~~p~~~ 219 (1254)
+.+|+.|.-+.-....-++.|+.+|+.+.....+..+.. +++.+.+. + .
T Consensus 48 DLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~-~-~ 125 (164)
T PF13350_consen 48 DLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADA-P-G 125 (164)
T ss_dssp E-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-T-T--
T ss_pred ECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccC-C-C
Confidence 567777777652111225569999988887774433321 12222222 3 6
Q ss_pred eEEEEcCCCCCchHHHHHHHHH
Q 000850 220 EVIFNCQMGRGRTTTGMVIATL 241 (1254)
Q Consensus 220 ~l~FhCq~G~GRTTt~Mvm~~L 241 (1254)
+++|||.+|+-||-++.++...
T Consensus 126 p~l~HC~aGKDRTG~~~alll~ 147 (164)
T PF13350_consen 126 PVLFHCTAGKDRTGVVAALLLS 147 (164)
T ss_dssp -EEEE-SSSSSHHHHHHHHHHH
T ss_pred cEEEECCCCCccHHHHHHHHHH
Confidence 9999999999999766655543
No 55
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=92.84 E-value=0.17 Score=53.28 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=34.2
Q ss_pred CccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHH-----------HHHHHh----------------cCCCCeE
Q 000850 588 SVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDML-----------AVNIAS----------------ASKDTAF 640 (1254)
Q Consensus 588 ~v~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~f-----------i~~v~~----------------~~~~~~l 640 (1254)
|-.|+.|.-+.......++.|+.+|+.+.....+..+..+ ..++.. +..+.++
T Consensus 48 DLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~ 127 (164)
T PF13350_consen 48 DLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPV 127 (164)
T ss_dssp E-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--E
T ss_pred ECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcE
Confidence 5578888888765555699999999999887754333322 222211 1123699
Q ss_pred EEecCCCCCcchhHHHHH
Q 000850 641 VFNCQMGRGRTTTGTVIA 658 (1254)
Q Consensus 641 ~F~Cq~G~GRTTt~Mvi~ 658 (1254)
+|||.+|+-||-.+.++.
T Consensus 128 l~HC~aGKDRTG~~~all 145 (164)
T PF13350_consen 128 LFHCTAGKDRTGVVAALL 145 (164)
T ss_dssp EEE-SSSSSHHHHHHHHH
T ss_pred EEECCCCCccHHHHHHHH
Confidence 999999999986544443
No 56
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=92.55 E-value=0.14 Score=59.93 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=34.2
Q ss_pred CCCCCCCCCchHHHHHHhhcC--------------C-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 195 TDEKSPKEQDFDILVDKISQT--------------D-LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 195 td~~~P~~~~iD~fi~~v~~~--------------p-~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
+|++.|. +.+.|++|++.. + ...++++||.+|.|||-+|.++-.++..
T Consensus 211 pd~gvP~--~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~ 273 (323)
T PHA02746 211 PDNGIPT--GMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQ 273 (323)
T ss_pred CCCCcCC--CHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHH
Confidence 4777664 445555554321 1 2379999999999999999988877764
No 57
>PHA02738 hypothetical protein; Provisional
Probab=92.09 E-value=0.22 Score=58.38 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 218 NTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 218 ~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
..++++||.+|.|||-+|+++-.++..
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~ 253 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISR 253 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHH
Confidence 468999999999999999998888775
No 58
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=92.08 E-value=0.18 Score=58.03 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=42.4
Q ss_pred CceEEEeecCCCCCCCcc-cHHHHHHHHHhc-CCCCeEEEecCCCCCcchhHHHHHHHH
Q 000850 605 PIKYARVPITDGKAPKTS-DFDMLAVNIASA-SKDTAFVFNCQMGRGRTTTGTVIACLL 661 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~-d~D~fi~~v~~~-~~~~~l~F~Cq~G~GRTTt~Mvi~~Li 661 (1254)
+++|.+||+.|.-.+.-. .|+.-++|+-.+ ..+.-..+||++|.+|++|..+-|.|.
T Consensus 121 ~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~ 179 (285)
T KOG1716|consen 121 GIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMK 179 (285)
T ss_pred CceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHH
Confidence 889999999994332222 255555666555 378899999999999999987777665
No 59
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=91.98 E-value=0.2 Score=56.20 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=47.9
Q ss_pred CCceEEEeecCCCCCCCccc-HHHHHHHHHhc-CCCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000850 604 FPIKYARVPITDGKAPKTSD-FDMLAVNIASA-SKDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1254)
Q Consensus 604 ~gl~Y~RIPitD~~aP~~~d-~D~fi~~v~~~-~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~ 666 (1254)
..+.|.+|||.||-.-.-.. |-.=|+|+-.+ .++...++||.+|..|+.|-.|.|.|-..+++
T Consensus 216 g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~ls 280 (343)
T KOG1717|consen 216 GEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLS 280 (343)
T ss_pred CceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccc
Confidence 37789999999996543222 23334677666 48899999999999999999988888766554
No 60
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=91.87 E-value=0.27 Score=57.68 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=40.2
Q ss_pred CceEEEeecCCCCCCCc-ccHHHHHHHHHhc-----------C-CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000850 605 PIKYARVPITDGKAPKT-SDFDMLAVNIASA-----------S-KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 665 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~-~d~D~fi~~v~~~-----------~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~ 665 (1254)
.+.|.-= ||++.|.. ..|-.|+..++.. + ..+++++||.+|.|||-|+.++-.++.+..
T Consensus 204 h~~y~~W--pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~ 275 (323)
T PHA02746 204 HFWFPDW--PDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLE 275 (323)
T ss_pred EEEECCC--CCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHH
Confidence 3444444 58888753 4565666555431 1 237999999999999999988877775543
No 61
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=91.81 E-value=0.19 Score=61.38 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=35.1
Q ss_pred eecCCCCCCCc-ccHHHHHHHHHhcC----------CCCeEEEecCCCCCcchhHHHHHH
Q 000850 611 VPITDGKAPKT-SDFDMLAVNIASAS----------KDTAFVFNCQMGRGRTTTGTVIAC 659 (1254)
Q Consensus 611 IPitD~~aP~~-~d~D~fi~~v~~~~----------~~~~l~F~Cq~G~GRTTt~Mvi~~ 659 (1254)
.-=|||..|.. +.+..|+..++... .....++||.+|.|||-|+++++.
T Consensus 429 TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~l 488 (535)
T PRK15375 429 KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALV 488 (535)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHH
Confidence 44588888754 45777777776541 112238999999999999999865
No 62
>PHA02738 hypothetical protein; Provisional
Probab=91.64 E-value=0.18 Score=59.02 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=40.5
Q ss_pred EEEeecCCCCCCCc-ccHHHHHHHHHhc------------C---CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000850 608 YARVPITDGKAPKT-SDFDMLAVNIASA------------S---KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 665 (1254)
Q Consensus 608 Y~RIPitD~~aP~~-~d~D~fi~~v~~~------------~---~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~ 665 (1254)
|+=..=||++.|.. .+|-.|+..++.. . ..+++++||.+|.|||-||.++-.++....
T Consensus 182 ~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~ 255 (320)
T PHA02738 182 FNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFD 255 (320)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHH
Confidence 44444458888853 4666666555531 0 146899999999999999998888775543
No 63
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=91.23 E-value=0.22 Score=58.14 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=39.0
Q ss_pred EEEeecCCCCCCC-cccHHHHHHHHHhc---------C---CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000850 608 YARVPITDGKAPK-TSDFDMLAVNIASA---------S---KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 665 (1254)
Q Consensus 608 Y~RIPitD~~aP~-~~d~D~fi~~v~~~---------~---~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~ 665 (1254)
|+=.-=||+..|. ..+|-.|+..++.. + ..+++++||.+|.|||-||.++-.++.+..
T Consensus 187 ~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~ 257 (312)
T PHA02747 187 FQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLV 257 (312)
T ss_pred EEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHH
Confidence 3333345888885 34566666555321 1 236899999999999999998877665443
No 64
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=91.14 E-value=0.25 Score=64.12 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=38.2
Q ss_pred eecCCCCCCCcc-cHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000850 611 VPITDGKAPKTS-DFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1254)
Q Consensus 611 IPitD~~aP~~~-d~D~fi~~v~~~~--~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~ 664 (1254)
+.=|||+-|++. +|-.|++.+++.- .++++++||.+|.|||-+-..|=.+++..
T Consensus 1034 taWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~ll 1090 (1144)
T KOG0792|consen 1034 TAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLL 1090 (1144)
T ss_pred cccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHH
Confidence 355788877643 5555555566653 47899999999999999876666666443
No 65
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=89.70 E-value=0.38 Score=54.17 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=46.4
Q ss_pred cceEEEeecCCCCCCCC-CchHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKE-QDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~-~~iD~fi~~v~~~-p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 243 (1254)
...|.+|||.||-.-.- .-|-+=|.||-+. .++....+||-+|+.|+-|-.|.|.|=+
T Consensus 217 ~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 217 EFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred ceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 34599999999987653 3345557888765 5889999999999999999999988744
No 66
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=89.67 E-value=0.39 Score=52.34 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=39.1
Q ss_pred ecCCCCCCCCCchHHHHHHhhc---C--CCCCeEEEEcCCCCCchHHHHHHHHHHHHhh
Q 000850 193 PVTDEKSPKEQDFDILVDKISQ---T--DLNTEVIFNCQMGRGRTTTGMVIATLVYLNR 246 (1254)
Q Consensus 193 Pitd~~~P~~~~iD~fi~~v~~---~--p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~ 246 (1254)
.-+++..| .+.+.|+.+++. . +.+.++++||..|.|||-+|.++..++..-.
T Consensus 142 ~W~~~~~P--~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~ 198 (235)
T PF00102_consen 142 NWPDDGVP--PSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLK 198 (235)
T ss_dssp SSSSSSSG--SSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHH
T ss_pred eccccccc--cccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccc
Confidence 44477777 445556655553 2 3789999999999999999999988877643
No 67
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=89.29 E-value=0.23 Score=64.95 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=44.6
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000850 605 PIKYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLRI 665 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~---~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~ 665 (1254)
.+.|..=|.-.-.+....-++..+...+.. ..+..+++||..|.|||-||..|..++.+..
T Consensus 983 qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~ 1046 (1087)
T KOG4228|consen 983 QFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMR 1046 (1087)
T ss_pred EEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHh
Confidence 566777777775555555566555555443 3588999999999999999999998885543
No 68
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=89.10 E-value=0.44 Score=51.93 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=42.9
Q ss_pred CceEEEeecCCCCCC-CcccHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000850 605 PIKYARVPITDGKAP-KTSDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP-~~~d~D~fi~~v~~~~--~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~ 666 (1254)
.+.|.. -+|++.| ..+.+-.|++.++... ....+++||..|.|||-++.++..++.....
T Consensus 137 ~~~~~~--W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~ 199 (235)
T PF00102_consen 137 HFHYTN--WPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKK 199 (235)
T ss_dssp EEEEES--SSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHH
T ss_pred ceeeee--ccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhcccccc
Confidence 445554 4477877 3445555555555443 7899999999999999999998888866554
No 69
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=88.42 E-value=0.38 Score=63.07 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=48.0
Q ss_pred eEEEeecCCCCCCCc-ccHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 000850 607 KYARVPITDGKAPKT-SDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1254)
Q Consensus 607 ~Y~RIPitD~~aP~~-~d~D~fi~~v~~~~--~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~ 666 (1254)
.||=--=+||+.|.. ..+=.|+..++... ...++|+||.+|.|||-+|.++=.|+.+...
T Consensus 697 qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~ 759 (1087)
T KOG4228|consen 697 QFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLEC 759 (1087)
T ss_pred eeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHh
Confidence 355556788998876 67777777777764 5689999999999999999999888866654
No 70
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=87.73 E-value=0.79 Score=48.73 Aligned_cols=59 Identities=29% Similarity=0.485 Sum_probs=47.1
Q ss_pred CceEEEeecCCC-CCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000850 605 PIKYARVPITDG-KAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1254)
Q Consensus 605 gl~Y~RIPitD~-~aP~~~d~D~fi~~v~~~~-~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~ 664 (1254)
++.|.+||+.|. .++...-||.--+.+.+.. ++..-++||-+|..|+.+ +.++.|++.+
T Consensus 60 ~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAs-LClAYLmK~~ 120 (198)
T KOG1718|consen 60 DIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSAS-LCLAYLMKYH 120 (198)
T ss_pred CceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHH-HHHHHHHHHc
Confidence 889999999997 5666777777777777764 788899999999999976 5666666544
No 71
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=85.65 E-value=0.68 Score=49.27 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=29.2
Q ss_pred CceEEEeecCCCCC----CCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHH
Q 000850 605 PIKYARVPITDGKA----PKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLL 661 (1254)
Q Consensus 605 gl~Y~RIPitD~~a----P~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li 661 (1254)
+++++.+|+..... +.++.+.+.++.+... .+-++.+||..|..||.+ |++||-
T Consensus 56 ~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~--vvg~lR 113 (164)
T PF03162_consen 56 GIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGL--VVGCLR 113 (164)
T ss_dssp T-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHH--HHHHHH
T ss_pred CceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhh--HHHHHH
Confidence 88999999988765 4566666666665443 356899999999988755 555554
No 72
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=83.44 E-value=0.69 Score=56.29 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=41.6
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHH
Q 000850 607 KYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1254)
Q Consensus 607 ~Y~RIPitD~~aP~~~d~D~fi~~v~~~---~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~ 662 (1254)
+-.++|.+||.+|.-+.+-.|-+-+-+. .+..-.++||.+|+|||++ ||++-|+.
T Consensus 74 ~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~-~icA~L~~ 131 (434)
T KOG2283|consen 74 RVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV-MICAYLIY 131 (434)
T ss_pred ceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE-EEeHHHHh
Confidence 3456999999999988776666544332 3556779999999999987 77777774
No 73
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=81.48 E-value=6 Score=40.77 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=47.3
Q ss_pred cceEEEeecCCCCCCCCCchHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHHHH
Q 000850 186 LVDYERVPVTDEKSPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATL 241 (1254)
Q Consensus 186 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~---p~~~~l~FhCq~G~GRTTt~Mvm~~L 241 (1254)
+|+-.-.|-.|...|..+.+|..++.++.- .++..+-+||-+|.||.-.-.+++.+
T Consensus 62 GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalali 120 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALI 120 (173)
T ss_pred CceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHH
Confidence 455888899999999999999999998743 37899999999999999877666643
No 74
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=81.27 E-value=2.3 Score=51.03 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=38.4
Q ss_pred eEEEeecCCCCCCCCCchHHHHHHhh-----cCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 188 DYERVPVTDEKSPKEQDFDILVDKIS-----QTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 188 ~Y~RiPitd~~~P~~~~iD~fi~~v~-----~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
+|+=.--+|++.|+ +...++++++ .-|...++++||.+|.|||-|+.++-..+..
T Consensus 266 ~~~~~~WPd~~~p~--~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~ 325 (415)
T KOG0789|consen 266 HYHYINWPDHGAPD--SVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIE 325 (415)
T ss_pred EEeeCCCccccCCc--chHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 45555566775444 4556666663 2345689999999999999999988844443
No 75
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.30 E-value=12 Score=38.07 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=54.8
Q ss_pred CeEEEEecCCCCCccccceeeccCcccchHHHHHHhhhcCccceEEEeecCCCCCCCCCchHHHHHHhhcCCCCCeEEEE
Q 000850 145 NKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFN 224 (1254)
Q Consensus 145 g~ilv~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p~~~~l~Fh 224 (1254)
|.-.+...-.||.-..+ .+-..+++..+.. +|.|.-||++... +++++|+.|..-+.++ .-+..-|
T Consensus 28 GFksiI~nRPDgEe~~Q------P~~~~i~~aa~~a-----Gl~y~~iPV~~~~-iT~~dV~~f~~Al~ea--egPVlay 93 (130)
T COG3453 28 GFKSIICNRPDGEEPGQ------PGFAAIAAAAEAA-----GLTYTHIPVTGGG-ITEADVEAFQRALDEA--EGPVLAY 93 (130)
T ss_pred ccceecccCCCCCCCCC------CChHHHHHHHHhc-----CCceEEeecCCCC-CCHHHHHHHHHHHHHh--CCCEEee
Confidence 44445555556543222 2334556666655 6669999999865 7899999999999887 5678899
Q ss_pred cCCCCCchHHHHHHHHHHH
Q 000850 225 CQMGRGRTTTGMVIATLVY 243 (1254)
Q Consensus 225 Cq~G~GRTTt~Mvm~~Li~ 243 (1254)
|+.| .|+|+ +|.+..
T Consensus 94 CrsG-tRs~~---ly~~~~ 108 (130)
T COG3453 94 CRSG-TRSLN---LYGLGE 108 (130)
T ss_pred ecCC-chHHH---HHHHHH
Confidence 9999 45554 444444
No 76
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=76.98 E-value=11 Score=39.02 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=47.0
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHH
Q 000850 605 PIKYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIA 658 (1254)
Q Consensus 605 gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~---~~~~~l~F~Cq~G~GRTTt~Mvi~ 658 (1254)
|++-.-.|..|...|..+.+|..++.++.. .|+..+-+||-+|.||.-.-.+++
T Consensus 62 GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvala 118 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALA 118 (173)
T ss_pred CceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHH
Confidence 999999999999999999999999988765 488999999999999987654444
No 77
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=76.53 E-value=5.3 Score=47.90 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=38.6
Q ss_pred ceEEEeecCCCCCCCcccHHHHHHHHH-----hcCCCCeEEEecCCCCCcchhHHHHHHHHHH
Q 000850 606 IKYARVPITDGKAPKTSDFDMLAVNIA-----SASKDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1254)
Q Consensus 606 l~Y~RIPitD~~aP~~~d~D~fi~~v~-----~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~ 663 (1254)
..|+=.--+|++.|. +...++.+++ ..+...++++||.+|.|||-|+..+-..+..
T Consensus 265 ~~~~~~~WPd~~~p~--~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~ 325 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPD--SVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIE 325 (415)
T ss_pred EEEeeCCCccccCCc--chHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 355555558886665 3344455553 2345789999999999999999988855544
No 78
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=74.61 E-value=4.2 Score=43.47 Aligned_cols=59 Identities=24% Similarity=0.435 Sum_probs=44.8
Q ss_pred cceEEEeecCCCC-CCCCCchHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000850 186 LVDYERVPVTDEK-SPKEQDFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1254)
Q Consensus 186 ~v~Y~RiPitd~~-~P~~~~iD~fi~~v~~~p-~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 245 (1254)
+++|.+||+.|+. ++.-.-||..-+.|.+.. ++..-.+||-||+.|+-. +.|+-||+.+
T Consensus 60 ~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAs-LClAYLmK~~ 120 (198)
T KOG1718|consen 60 DIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSAS-LCLAYLMKYH 120 (198)
T ss_pred CceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHH-HHHHHHHHHc
Confidence 3459999999974 455677787777787765 677889999999999865 5555566654
No 79
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=66.96 E-value=3.1 Score=50.84 Aligned_cols=55 Identities=25% Similarity=0.460 Sum_probs=37.5
Q ss_pred EEEeecCCCCCCCCCchHHHHHHhh---cCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 189 YERVPVTDEKSPKEQDFDILVDKIS---QTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 189 Y~RiPitd~~~P~~~~iD~fi~~v~---~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
-.++|.+||.+|.-+.+=.|-+=+. +.++.--.++||.+|+|||++ ||+|-|+..
T Consensus 75 V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~-~icA~L~~~ 132 (434)
T KOG2283|consen 75 VARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV-MICAYLIYS 132 (434)
T ss_pred eeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE-EEeHHHHhh
Confidence 4568999999998555444433222 123556679999999999986 566666665
No 80
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=57.04 E-value=17 Score=37.56 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=36.3
Q ss_pred cccchHHHHHHhhhcCccceEEEeecCCCCCCCCCchHHHHHHhhcC-C-CCCeEEEEcCCCCCchHHHHHHH
Q 000850 169 SVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT-D-LNTEVIFNCQMGRGRTTTGMVIA 239 (1254)
Q Consensus 169 ~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~-p-~~~~l~FhCq~G~GRTTt~Mvm~ 239 (1254)
||+|++|+=.-.....++|-|--. ++...-.+ -.|.+-+... | .+.-|||+|+.|+ |+++|--++
T Consensus 43 DVRepeEfk~gh~~~siNiPy~~~--~~~~~l~~---~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~A~~~l 109 (136)
T KOG1530|consen 43 DVREPEEFKQGHIPASINIPYMSR--PGAGALKN---PEFLKQVGSSKPPHDKEIIFGCASGV-RSLKATKIL 109 (136)
T ss_pred eecCHHHhhccCCcceEecccccc--ccccccCC---HHHHHHhcccCCCCCCcEEEEeccCc-chhHHHHHH
Confidence 788999986643332333222111 12222222 2466666544 4 5569999999994 666665443
No 81
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.48 E-value=25 Score=35.94 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=44.6
Q ss_pred cCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHH
Q 000850 590 QTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1254)
Q Consensus 590 ~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~ 662 (1254)
...++..++. |+.|.-|||+- .-+.++||+.|...+-++. .+..-||+.| .|+|+ +|.+..
T Consensus 48 ~~i~~aa~~a-----Gl~y~~iPV~~-~~iT~~dV~~f~~Al~eae--gPVlayCrsG-tRs~~---ly~~~~ 108 (130)
T COG3453 48 AAIAAAAEAA-----GLTYTHIPVTG-GGITEADVEAFQRALDEAE--GPVLAYCRSG-TRSLN---LYGLGE 108 (130)
T ss_pred HHHHHHHHhc-----CCceEEeecCC-CCCCHHHHHHHHHHHHHhC--CCEEeeecCC-chHHH---HHHHHH
Confidence 3445555555 99999999998 4589999999988777654 4678899999 45544 444443
No 82
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=53.05 E-value=23 Score=36.63 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCccCHHHHHhcccCCCCCceEEEeecCCCCCCCcccHHHHHHHHHhc-C-CCCeEEEecCCCCCcchhHHHH
Q 000850 587 ESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASA-S-KDTAFVFNCQMGRGRTTTGTVI 657 (1254)
Q Consensus 587 ~~v~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~-~-~~~~l~F~Cq~G~GRTTt~Mvi 657 (1254)
=||.||+|+-.-+....+.+=|.-. ++..+-.+ ..|++.+... | .+.-|+|+|+.|+ |..+|--+
T Consensus 42 lDVRepeEfk~gh~~~siNiPy~~~--~~~~~l~~---~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~A~~~ 108 (136)
T KOG1530|consen 42 LDVREPEEFKQGHIPASINIPYMSR--PGAGALKN---PEFLKQVGSSKPPHDKEIIFGCASGV-RSLKATKI 108 (136)
T ss_pred EeecCHHHhhccCCcceEecccccc--ccccccCC---HHHHHHhcccCCCCCCcEEEEeccCc-chhHHHHH
Confidence 3789999988877554333333221 22222222 3456666554 4 4558999999994 55555433
No 83
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=43.71 E-value=51 Score=31.32 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=17.5
Q ss_pred HhhcCCCCCeEEEEcCCCCCchHH
Q 000850 211 KISQTDLNTEVIFNCQMGRGRTTT 234 (1254)
Q Consensus 211 ~v~~~p~~~~l~FhCq~G~GRTTt 234 (1254)
....+|++..++|+|..| +|+..
T Consensus 54 ~~~~~~~~~~ivv~C~~G-~rs~~ 76 (100)
T cd01523 54 ILDQLPDDQEVTVICAKE-GSSQF 76 (100)
T ss_pred HHhhCCCCCeEEEEcCCC-CcHHH
Confidence 445678889999999998 46543
No 84
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=40.14 E-value=26 Score=39.91 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 217 LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 217 ~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
.+-++.+||.+|.-||-++.+++-.+..
T Consensus 135 e~~PvL~HC~~GkdRTGl~~al~r~~~~ 162 (249)
T COG2365 135 ENGPVLIHCTAGKDRTGLVAALYRKLVG 162 (249)
T ss_pred ccCCEEEecCCCCcchHHHHHHHHHHhC
Confidence 4689999999999999887777755553
No 85
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=40.02 E-value=61 Score=36.77 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=42.9
Q ss_pred cceEEEeecCCCC----CCCCCchHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHHHHHHHhh
Q 000850 186 LVDYERVPVTDEK----SPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATLVYLNR 246 (1254)
Q Consensus 186 ~v~Y~RiPitd~~----~P~~~~iD~fi~~v~~~---p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~ 246 (1254)
+|+|+-|-|..++ -|.....|..|...-++ ..+-++..||..|.=||.+-.-+.--+++|.
T Consensus 109 ~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~ 176 (249)
T KOG1572|consen 109 GIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWS 176 (249)
T ss_pred CceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccc
Confidence 4456777776666 78888888877665543 4889999999999999865444444466643
No 86
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=34.70 E-value=55 Score=41.92 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=41.1
Q ss_pred EEEeecCCCCCCCcccHHHHHHHHHhc-----CCCCeEEEecCCCCCcchhHHHHHHHHHHHHhcCCCc
Q 000850 608 YARVPITDGKAPKTSDFDMLAVNIASA-----SKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRPI 671 (1254)
Q Consensus 608 Y~RIPitD~~aP~~~d~D~fi~~v~~~-----~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~~~g~~~ 671 (1254)
||=+--+++.-|.-. ..+++|-|+- ....++++||..|-|||-|.. +.||++..+.+|...
T Consensus 895 FHfLSWp~egvPasa--rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yi-liDmvl~Rm~kGake 960 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASA--RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYI-LIDMVLNRMAKGAKE 960 (1004)
T ss_pred eeeecccccCCccch--HHHHHHHHHhhhhccCCCCceEEEccCCCCccceee-eHHHHHHHHhccchh
Confidence 455555666666543 3455555442 367899999999999999875 456776777666543
No 87
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=34.44 E-value=55 Score=31.25 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.4
Q ss_pred cCCCCeEEEecCCCCCcchhH
Q 000850 634 ASKDTAFVFNCQMGRGRTTTG 654 (1254)
Q Consensus 634 ~~~~~~l~F~Cq~G~GRTTt~ 654 (1254)
.+++..++|.|+.| +|+..+
T Consensus 58 ~~~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 58 LLKGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred hcCCCEEEEECCCc-hhHHHH
Confidence 36788899999988 666544
No 88
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=34.03 E-value=43 Score=38.10 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCC-CeeEEeccCCCCcchhHHHHHHHHHhh
Q 000850 1066 IDAIQYCKDDSA-GCYLFVSHTGFGGVAYAMAIICLRLDA 1104 (1254)
Q Consensus 1066 fd~l~~~~~~~~-~~~vfnCqmGrGrtTt~Mvia~L~~~~ 1104 (1254)
+-.++..+.+.. ..+++.|-+|.=|| |+|+||++...
T Consensus 124 ~~~~~~l~~~~e~~PvL~HC~~GkdRT--Gl~~al~r~~~ 161 (249)
T COG2365 124 LVELLQLLADAENGPVLIHCTAGKDRT--GLVAALYRKLV 161 (249)
T ss_pred HHHHHHHHhhcccCCEEEecCCCCcch--HHHHHHHHHHh
Confidence 333333333554 89999999999999 99999998543
No 89
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=32.55 E-value=38 Score=43.25 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=36.8
Q ss_pred EEEeecCCCCCCCCCchHHHHHHhhcCC-----CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000850 189 YERVPVTDEKSPKEQDFDILVDKISQTD-----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1254)
Q Consensus 189 Y~RiPitd~~~P~~~~iD~fi~~v~~~p-----~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~ 245 (1254)
||=+-=++++-|. .--.+++|=|+.. ..-+|++||..|.|||-|.. +.||+.|+
T Consensus 895 FHfLSWp~egvPa--sarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yi-liDmvl~R 953 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPA--SARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYI-LIDMVLNR 953 (1004)
T ss_pred eeeecccccCCcc--chHHHHHHHHHhhhhccCCCCceEEEccCCCCccceee-eHHHHHHH
Confidence 4445555565554 3345666655443 57899999999999999875 45777764
No 90
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=32.50 E-value=2.3e+02 Score=31.70 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHhcCCeEEEEecCCCCCccccceeeccCcccchHHHHHHhhhcCccceEEEeecCCCCCCCCCchHHHHHHhhcCC
Q 000850 137 IMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTD 216 (1254)
Q Consensus 137 l~ea~~~~g~ilv~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p 216 (1254)
++.+++.|-.+.+..++..+. ..+..-..++++.....| ++..+++-|.. ...|+++..+++.+++.-
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~---------~~~~~~l~~~~~~~~~~g--~~~i~l~Dt~G-~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGC---------KTDPEYVLEVAKALEEAG--ADEISLKDTVG-LATPEEVAELVKALREAL 188 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCC---------CCCHHHHHHHHHHHHHcC--CCEEEechhcC-CcCHHHHHHHHHHHHHhC
Confidence 457777787776665432110 122333445555554444 55888888855 588999999999999765
Q ss_pred CCCeEEEEcCCCC
Q 000850 217 LNTEVIFNCQMGR 229 (1254)
Q Consensus 217 ~~~~l~FhCq~G~ 229 (1254)
++..|.|||+--.
T Consensus 189 ~~~~~~~H~Hn~~ 201 (265)
T cd03174 189 PDVPLGLHTHNTL 201 (265)
T ss_pred CCCeEEEEeCCCC
Confidence 5578777776654
No 91
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=29.06 E-value=55 Score=34.47 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=22.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHHHH
Q 000850 221 VIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 221 l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
.+.++..|.|+||+++.++..+..
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~ 25 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALAR 25 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCccHHHHHHHHHhcccc
Confidence 478999999999999999999887
No 92
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=28.25 E-value=2.6e+02 Score=25.14 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhhhccCHHHHHHHHHHHhh------hhccChhHHHHHHHHHHHHHHH
Q 000850 737 CREALDAIIDRCSALQNIREAVLHYRKVFN------QQHVEPRVRMVALSRGAEYLER 788 (1254)
Q Consensus 737 ~K~~VD~aID~cs~~~nLReaI~~y~~~~~------~~a~~~~~r~~~~~r~l~yLeR 788 (1254)
+...+..|+. |..-.|..+||-.|++... ....++..|..+.++..+||.|
T Consensus 5 A~~~~~~Av~-~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R 61 (69)
T PF04212_consen 5 AIELIKKAVE-ADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLER 61 (69)
T ss_dssp HHHHHHHHHH-HHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3445555554 4457899999988877655 2334566677889999999988
No 93
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.26 E-value=2.4e+02 Score=32.81 Aligned_cols=112 Identities=14% Similarity=0.080 Sum_probs=64.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeecCCCccccccccccCCCccCHHHHHhcccCCCCCceEEEeec
Q 000850 534 LEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPI 613 (1254)
Q Consensus 534 ~~~~Gis~~~VE~~E~~Lk~dil~e~~~~~g~~l~~~e~~~~~~~~~we~v~~~~v~T~~Ev~~~~~~~~~gl~Y~RIPi 613 (1254)
..+.+.+++++.++= .++++.++..+-.+.+.-++ -+. |. .+.++ -..++++.. ...|.+..+|+=
T Consensus 103 ~~~~~~t~~e~l~~~----~~~i~~a~~~G~~v~~~~~d-~~~--~~--r~~~~---~~~~~~~~~--~~~G~~~i~l~D 168 (280)
T cd07945 103 TEQLRKTPEEHFADI----REVIEYAIKNGIEVNIYLED-WSN--GM--RDSPD---YVFQLVDFL--SDLPIKRIMLPD 168 (280)
T ss_pred HHHHCcCHHHHHHHH----HHHHHHHHhCCCEEEEEEEe-CCC--CC--cCCHH---HHHHHHHHH--HHcCCCEEEecC
Confidence 345678877664332 23366777766555554442 110 00 00111 112222222 223777777777
Q ss_pred CCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 000850 614 TDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLRI 665 (1254)
Q Consensus 614 tD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~~ 665 (1254)
|- +.-.|.++..++..+++..++..|.||||.-. +|.++-.+.-..
T Consensus 169 T~-G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~-----Gla~AN~laA~~ 214 (280)
T cd07945 169 TL-GILSPFETYTYISDMVKRYPNLHFDFHAHNDY-----DLAVANVLAAVK 214 (280)
T ss_pred CC-CCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCC-----CHHHHHHHHHHH
Confidence 77 56778889999999988766778888888765 566666554443
No 94
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=26.91 E-value=1.4e+02 Score=34.15 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=43.2
Q ss_pred CceEEEeecCCCC----CCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHH
Q 000850 605 PIKYARVPITDGK----APKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLL 661 (1254)
Q Consensus 605 gl~Y~RIPitD~~----aP~~~d~D~fi~~v~~~---~~~~~l~F~Cq~G~GRTTt~Mvi~~Li 661 (1254)
++.|+-|-|.-++ -|.....|..|...... ..+-++..||..|+=|| +.+++||-
T Consensus 109 ~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRt--g~lVgclR 170 (249)
T KOG1572|consen 109 GIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRT--GCLVGCLR 170 (249)
T ss_pred CceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcch--hhhHHHHH
Confidence 7788888888777 89899988888655443 37889999999988887 56777775
No 95
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=25.94 E-value=32 Score=33.19 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=22.5
Q ss_pred cceEEEECCcccccccCCCcccccccccCChhHHHHHHHHHHH
Q 000850 948 EEAVVYINGTPFVLRELNKPVDTLKHVGITGPVVEHMEARLKE 990 (1254)
Q Consensus 948 EEpVlyi~g~p~vLR~~~~p~~n~e~~Gi~~~~vE~mE~~lk~ 990 (1254)
++|+|+|+||||.|.++.+ .++-|+.|=.+=|+
T Consensus 39 d~p~V~V~Gr~~~~~eVtq----------~p~LV~qMT~~EKE 71 (86)
T PF11521_consen 39 DDPTVMVAGRPYPYSEVTQ----------RPELVAQMTPEEKE 71 (86)
T ss_dssp SS-EEEETTEEEEHHHHHH-----------HHHHHHS-HHHHH
T ss_pred cCceEEECCEEeehhhcCc----------chHHHHHcCHHHHH
Confidence 4899999999999999742 25667766554444
No 96
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=25.53 E-value=1e+02 Score=36.11 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHhhhcCccceEEEeecCCCCCCCCCchHHHHHHhhcCC---CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 175 DVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTD---LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 175 Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~p---~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
+++......|.+ +|...|... +++-.++.-+...+ ....-++++..|.|.||++..++..+..
T Consensus 55 ~~~~~a~~~Ga~-~~l~~P~~~------~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~ 120 (322)
T TIGR03815 55 ALWRAAAAVGAE-HVAVLPEAE------GWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAAR 120 (322)
T ss_pred HHHHHHHHhChh-heeeCCCCH------HHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHh
Confidence 344443334554 588777662 22222333232112 2356689999999999999999998764
No 97
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=23.76 E-value=73 Score=33.09 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 220 EVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 220 ~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
..+++|+.|.|.||++..++..+..
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~ 26 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQ 26 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 98
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=23.59 E-value=61 Score=35.31 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 217 LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 217 ~~~~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
+.--+|++|..|+|.||.||=++ +|.
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGla--lRA 45 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQA--LRI 45 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHH--HHH
Confidence 56789999999999999987655 554
No 99
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.74 E-value=3.7e+02 Score=31.10 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=39.7
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 000850 604 FPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1254)
Q Consensus 604 ~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~~~ 664 (1254)
.|.+..+|+-|-. .-.|.++-.++..+++.-++..+.||||.-. +|.++-.+.-+
T Consensus 161 ~Ga~~i~l~DT~G-~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~-----GlA~AN~laA~ 215 (274)
T cd07938 161 LGCDEISLGDTIG-VATPAQVRRLLEAVLERFPDEKLALHFHDTR-----GQALANILAAL 215 (274)
T ss_pred cCCCEEEECCCCC-ccCHHHHHHHHHHHHHHCCCCeEEEEECCCC-----ChHHHHHHHHH
Confidence 4777778877774 5678899999999988766678888888755 45555544433
No 100
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=22.49 E-value=79 Score=30.87 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHHHHh
Q 000850 221 VIFNCQMGRGRTTTGMVIATLVYLN 245 (1254)
Q Consensus 221 l~FhCq~G~GRTTt~Mvm~~Li~~~ 245 (1254)
.+.+|+.|.|.||+++.++.-+...
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~ 27 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKE 27 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhc
Confidence 5789999999999999999988864
No 101
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=22.46 E-value=1e+02 Score=37.43 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=45.0
Q ss_pred cceEEEeecCCCC-CCCCCchHHHHHHhhcC-----CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000850 186 LVDYERVPVTDEK-SPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1254)
Q Consensus 186 ~v~Y~RiPitd~~-~P~~~~iD~fi~~v~~~-----p~~~~l~FhCq~G~GRTTt~Mvm~~Li~ 243 (1254)
++.|.++-..-+. .|+...++.|++.+... .++.-+.+||-.|.-||-.-+ .+.|+.
T Consensus 86 g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI-~~yL~~ 148 (393)
T KOG2386|consen 86 GVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLI-CAYLAD 148 (393)
T ss_pred ceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceee-eeeeee
Confidence 4559999888887 99999999999998753 367889999999999998543 344433
No 102
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=22.42 E-value=5.2e+02 Score=32.94 Aligned_cols=139 Identities=17% Similarity=0.281 Sum_probs=83.6
Q ss_pred cceeeccCCCHHHHHHHHHHhccC-CCCCcceEEEEEcCCCceEEEcCceeEeecCCCCCCccccCCCCHHHHHHHHHHH
Q 000850 54 LRVHGVAIPTIEGIRNVLKHIGAQ-KDGKRVQVLWISLREEPVVYINGRPFVLRDVGRPFSNLEYTGINRARVEQMEARL 132 (1254)
Q Consensus 54 l~V~G~aQPS~~gl~~vl~~L~~~-~~g~~~~ivwvdLREEph~yING~p~s~r~~~~~~~N~~~~Gis~~~ve~~E~rL 132 (1254)
.-+.|-||+|.+.+.+-+.+|... ..| .-+-|| .+|+| ||.|-. ...| . ||
T Consensus 62 aELAGGGq~t~e~~~~~i~ql~~~lepG---~t~qfN-----~ifld--pylw~~--------qig~---k-------rL 113 (717)
T COG4981 62 AELAGGGQVTEEIFTNAIEQLVSLLEPG---RTAQFN-----SIFLD--PYLWKL--------QIGG---K-------RL 113 (717)
T ss_pred eeecCCcccCHHHHHHHHHHHHhccCCC---ccceee-----EEEec--hHHhhh--------cCCh---H-------HH
Confidence 456799999999999998888653 122 335555 36666 676632 2233 3 33
Q ss_pred hHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccchHHHHHHhhhcCccceEEEeecCCCCCCCCCchHHHHHHh
Q 000850 133 KEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKI 212 (1254)
Q Consensus 133 k~dil~ea~~~~g~ilv~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v 212 (1254)
+.++...|-.|- |-. ++....++..--|+.+.+...|+. |.-+ .|..||+.=+++
T Consensus 114 ----v~kara~G~~I~-------gvv----IsAGIP~le~A~ElI~~L~~~G~~--yv~f--------KPGtIeqI~svi 168 (717)
T COG4981 114 ----VQKARASGAPID-------GVV----ISAGIPSLEEAVELIEELGDDGFP--YVAF--------KPGTIEQIRSVI 168 (717)
T ss_pred ----HHHHHhcCCCcc-------eEE----EecCCCcHHHHHHHHHHHhhcCce--eEEe--------cCCcHHHHHHHH
Confidence 567777777661 111 222333455556777777556655 7654 455666655555
Q ss_pred h--cCCCCCeEEEEcCCCCCc--------hHHHHHHHHHHHHh
Q 000850 213 S--QTDLNTEVIFNCQMGRGR--------TTTGMVIATLVYLN 245 (1254)
Q Consensus 213 ~--~~p~~~~l~FhCq~G~GR--------TTt~Mvm~~Li~~~ 245 (1254)
+ +..+..+++.|-..|++= -+.-+.+|.=||.+
T Consensus 169 ~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~ 211 (717)
T COG4981 169 RIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSR 211 (717)
T ss_pred HHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcC
Confidence 4 233688999999999853 24455555555543
No 103
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=22.25 E-value=1.2e+02 Score=28.79 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.6
Q ss_pred CCCCCeEEEEcCCCCCchHHHH
Q 000850 215 TDLNTEVIFNCQMGRGRTTTGM 236 (1254)
Q Consensus 215 ~p~~~~l~FhCq~G~GRTTt~M 236 (1254)
.+++..++|+|+.| +|+..++
T Consensus 58 ~~~~~~ivvyC~~G-~rs~~a~ 78 (101)
T cd01518 58 LLKGKKVLMYCTGG-IRCEKAS 78 (101)
T ss_pred hcCCCEEEEECCCc-hhHHHHH
Confidence 47888999999988 6776553
No 104
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.06 E-value=3.3e+02 Score=32.78 Aligned_cols=105 Identities=8% Similarity=-0.097 Sum_probs=58.1
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccchHHHHHHhhhcCccceEEEe
Q 000850 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 192 (1254)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rLk~dil~ea~~~~g~ilv~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~Ri 192 (1254)
.+..|.+.|.+++.+ + -.++++.++..|..+.++-....|-... ...++.-..++++.+...| ++..+|
T Consensus 148 h~~~n~~~t~~e~l~---~-~~~~v~~Ak~~Gl~v~~~is~~fg~p~~-----~r~~~~~l~~~~~~~~~~G--ad~I~l 216 (347)
T PLN02746 148 FSKSNINCSIEESLV---R-YREVALAAKKHSIPVRGYVSCVVGCPIE-----GPVPPSKVAYVAKELYDMG--CYEISL 216 (347)
T ss_pred HHHHHhCCCHHHHHH---H-HHHHHHHHHHcCCeEEEEEEeeecCCcc-----CCCCHHHHHHHHHHHHHcC--CCEEEe
Confidence 444568888777643 1 2345678888887775444332221111 0113344556666654444 447777
Q ss_pred ecCCCCCCCCCchHHHHHHhhcCCCCCeEEEEcCCCC
Q 000850 193 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGR 229 (1254)
Q Consensus 193 Pitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~ 229 (1254)
+-|-..+ .|.++-.++..+++.-+...|.|||+.-.
T Consensus 217 ~DT~G~a-~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 252 (347)
T PLN02746 217 GDTIGVG-TPGTVVPMLEAVMAVVPVDKLAVHFHDTY 252 (347)
T ss_pred cCCcCCc-CHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 7666654 47778888888775423334555555433
No 105
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=21.81 E-value=3.4e+02 Score=31.58 Aligned_cols=117 Identities=11% Similarity=-0.017 Sum_probs=68.5
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccchHHHHHHhhhcCccceEEEe
Q 000850 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 192 (1254)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rLk~dil~ea~~~~g~ilv~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~Ri 192 (1254)
.+..+.+.|.+++.+ + -.++++.++..|-.+.+.-++ -+... .+ +..-..++++..... +++..+|
T Consensus 101 h~~~~~~~t~~e~l~---~-~~~~i~~a~~~G~~v~~~~~d-~~~~~----r~---~~~~~~~~~~~~~~~--G~~~i~l 166 (280)
T cd07945 101 HCTEQLRKTPEEHFA---D-IREVIEYAIKNGIEVNIYLED-WSNGM----RD---SPDYVFQLVDFLSDL--PIKRIML 166 (280)
T ss_pred HHHHHHCcCHHHHHH---H-HHHHHHHHHhCCCEEEEEEEe-CCCCC----cC---CHHHHHHHHHHHHHc--CCCEEEe
Confidence 445567788777633 2 234567888888777776653 11100 11 112333444444333 4457777
Q ss_pred ecCCCCCCCCCchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHHhhhcC
Q 000850 193 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRIGA 249 (1254)
Q Consensus 193 Pitd~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~~~~ 249 (1254)
+-|-.. -.|.++-.++..+++.-++..|.|||+.-. +|.++-.+..-+.+.
T Consensus 167 ~DT~G~-~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~-----Gla~AN~laA~~aGa 217 (280)
T cd07945 167 PDTLGI-LSPFETYTYISDMVKRYPNLHFDFHAHNDY-----DLAVANVLAAVKAGI 217 (280)
T ss_pred cCCCCC-CCHHHHHHHHHHHHhhCCCCeEEEEeCCCC-----CHHHHHHHHHHHhCC
Confidence 766655 456778888888876545677888887655 566666555544443
No 106
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=21.58 E-value=4.8e+02 Score=30.41 Aligned_cols=106 Identities=11% Similarity=-0.034 Sum_probs=58.3
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccchHHHHHHhhhcCccce-EEE
Q 000850 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVD-YER 191 (1254)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rLk~dil~ea~~~~g~ilv~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~v~-Y~R 191 (1254)
.|..|.|+|.+++.+ + -.++++.++..|-.+.++-|+.-- .+ ....-+.-.+++++.... .+++ -.+
T Consensus 101 ~~~~~~~~t~~e~l~---~-~~~~v~~a~~~g~~v~~~~ed~~r--~d----~~~~v~~~~~~~~~~~~~--~G~~~~i~ 168 (279)
T cd07947 101 HIFKKLKMTREEAME---K-YLEIVEEALDHGIKPRCHLEDITR--AD----IYGFVLPFVNKLMKLSKE--SGIPVKIR 168 (279)
T ss_pred HHHHHhCcCHHHHHH---H-HHHHHHHHHHCCCeEEEEEEcccC--CC----cccchHHHHHHHHHHHHH--CCCCEEEE
Confidence 444568888887743 2 245577888888777777643100 00 000011233444443322 3455 377
Q ss_pred eecCCCCC-CC-----CCchHHHHHHhhcC-C-CC--CeEEEEcCCCCC
Q 000850 192 VPVTDEKS-PK-----EQDFDILVDKISQT-D-LN--TEVIFNCQMGRG 230 (1254)
Q Consensus 192 iPitd~~~-P~-----~~~iD~fi~~v~~~-p-~~--~~l~FhCq~G~G 230 (1254)
|+-|-..+ |. |+++..++..+++. + ++ -.+|+|+-.|.+
T Consensus 169 l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla 217 (279)
T cd07947 169 LCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKA 217 (279)
T ss_pred eccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChH
Confidence 77776654 42 47888899888764 2 23 345666666654
No 107
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.44 E-value=3.8e+02 Score=29.98 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHH
Q 000850 604 FPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1254)
Q Consensus 604 ~gl~Y~RIPitD~~aP~~~d~D~fi~~v~~~~~~~~l~F~Cq~G~GRTTt~Mvi~~Li~ 662 (1254)
.|.+..+++-|.. ...|+++..+++.+++..++..+.||||.-.| |.++..+.
T Consensus 158 ~g~~~i~l~Dt~G-~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g-----la~an~la 210 (265)
T cd03174 158 AGADEISLKDTVG-LATPEEVAELVKALREALPDVPLGLHTHNTLG-----LAVANSLA 210 (265)
T ss_pred cCCCEEEechhcC-CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC-----hHHHHHHH
Confidence 4778888888864 69999999999999988766888888887654 44554443
No 108
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.08 E-value=5.2e+02 Score=29.87 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=61.0
Q ss_pred ccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCccccceeeccCcccchHHHHHHhhhcCccceEEEeecC
Q 000850 116 EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVT 195 (1254)
Q Consensus 116 ~~~Gis~~~ve~~E~rLk~dil~ea~~~~g~ilv~~e~~~g~~~~~w~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPit 195 (1254)
.|.+.+.+++.+.- .+.++.+++.|..+.+.-...-+.... ...+..-..++++.+.. ++++..+|+-|
T Consensus 103 ~~~~~s~~~~~~~~----~~~v~~ak~~G~~v~~~i~~~f~~~~~-----~~~~~~~~~~~~~~~~~--~Ga~~i~l~DT 171 (274)
T cd07938 103 KNINCSIAESLERF----EPVAELAKAAGLRVRGYVSTAFGCPYE-----GEVPPERVAEVAERLLD--LGCDEISLGDT 171 (274)
T ss_pred HHcCCCHHHHHHHH----HHHHHHHHHCCCeEEEEEEeEecCCCC-----CCCCHHHHHHHHHHHHH--cCCCEEEECCC
Confidence 34777765543322 233567887887775443321111000 01122223344444433 34557777777
Q ss_pred CCCCCCCCchHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHHhhhc
Q 000850 196 DEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRIG 248 (1254)
Q Consensus 196 d~~~P~~~~iD~fi~~v~~~p~~~~l~FhCq~G~GRTTt~Mvm~~Li~~~~~~ 248 (1254)
-.. -.|.++-.++..+++.-++..|.|||+.-. +|.++-.+.....+
T Consensus 172 ~G~-~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~-----GlA~AN~laA~~aG 218 (274)
T cd07938 172 IGV-ATPAQVRRLLEAVLERFPDEKLALHFHDTR-----GQALANILAALEAG 218 (274)
T ss_pred CCc-cCHHHHHHHHHHHHHHCCCCeEEEEECCCC-----ChHHHHHHHHHHhC
Confidence 666 457778888888776434567777777554 34444444443333
No 109
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=21.08 E-value=1e+02 Score=29.38 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCchHHHHHHHHHHHH
Q 000850 220 EVIFNCQMGRGRTTTGMVIATLVYL 244 (1254)
Q Consensus 220 ~l~FhCq~G~GRTTt~Mvm~~Li~~ 244 (1254)
..+.++..|.|+||+++.++..+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~ 26 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR 26 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 3578999999999999999988875
No 110
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=20.90 E-value=95 Score=39.32 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=46.9
Q ss_pred CCCccCHHHHHHHHHhcCCCeeEeeecCCCCcCCChhhHHHHHHhhcCCCCeeEEeccCCCCcchhHHHHHHHH
Q 000850 1028 ADDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAIQYCKDDSAGCYLFVSHTGFGGVAYAMAIICLR 1101 (1254)
Q Consensus 1028 ~~~v~Tp~Evy~~~~~~g~~v~Y~RiPitde~aP~~~~fd~l~~~~~~~~~~~vfnCqmGrGrtTt~Mvia~L~ 1101 (1254)
..++..+++.|..-.+|-|..+ ||=.-+-+|.-.+=..| ..-..-++.-|+|--=---+-|...-|.
T Consensus 746 ~~~~~Nlqdwf~r~p~e~~~~d---VpkdPf~SP~~A~de~l----~qLPp~~i~ac~mDP~LDD~vmfA~kLr 812 (880)
T KOG4388|consen 746 RRSSQNLQDWFGRTPMELYSSD---VPKDPFMSPLLAPDEML----KQLPPVHIVACAMDPMLDDSVMFARKLR 812 (880)
T ss_pred HhhhhhHHHHhhcCcchhhcCC---CCCCcccCcccCChHHH----hcCCCceEEEeccCcchhHHHHHHHHHH
Confidence 4788888899988888888887 66666677766554333 2334568889999876666666666665
No 111
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.87 E-value=2.3e+02 Score=26.83 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=15.5
Q ss_pred HHhcCCCCeEEEecCCCCCcch
Q 000850 631 IASASKDTAFVFNCQMGRGRTT 652 (1254)
Q Consensus 631 v~~~~~~~~l~F~Cq~G~GRTT 652 (1254)
....+++..++|+|..| +|+.
T Consensus 55 ~~~~~~~~~ivv~C~~G-~rs~ 75 (100)
T cd01523 55 LDQLPDDQEVTVICAKE-GSSQ 75 (100)
T ss_pred HhhCCCCCeEEEEcCCC-CcHH
Confidence 44557888999999988 3543
No 112
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=20.75 E-value=1.2e+02 Score=30.06 Aligned_cols=28 Identities=14% Similarity=0.437 Sum_probs=18.5
Q ss_pred HHHHHhhc-CCCCCeEEEEcCCCCCchHHH
Q 000850 207 ILVDKISQ-TDLNTEVIFNCQMGRGRTTTG 235 (1254)
Q Consensus 207 ~fi~~v~~-~p~~~~l~FhCq~G~GRTTt~ 235 (1254)
.|...+.. .+++..++|.|..| -|+..+
T Consensus 52 ~~~~~l~~~~~~~~~ivv~C~~G-~rs~~a 80 (117)
T cd01522 52 NFLAELEEKVGKDRPVLLLCRSG-NRSIAA 80 (117)
T ss_pred HHHHHHHhhCCCCCeEEEEcCCC-ccHHHH
Confidence 34444433 26788899999988 466554
No 113
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=20.38 E-value=1.5e+02 Score=28.76 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=18.1
Q ss_pred HHHHHhhcC--CCCCeEEEEcCCCCCchHH
Q 000850 207 ILVDKISQT--DLNTEVIFNCQMGRGRTTT 234 (1254)
Q Consensus 207 ~fi~~v~~~--p~~~~l~FhCq~G~GRTTt 234 (1254)
.|...+..+ +++..++|+|+.|. |+..
T Consensus 53 ~l~~~~~~l~~~~~~~ivv~C~~G~-rs~~ 81 (109)
T cd01533 53 ELVLRVGELAPDPRTPIVVNCAGRT-RSII 81 (109)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCc-hHHH
Confidence 444455555 35678999999985 6543
Done!