BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000853
(1252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTT-------LMDVLSGRKTXXXXXXXXXX 725
++K++Q+L + + G AL+G SG GK+T L D L G +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 726 XXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
Y + I G Q + T+ E++ + EI+ K + +
Sbjct: 459 VRYLR------EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 786 I--ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
+ + D +LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V
Sbjct: 512 LPHQFD----TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ 566
Query: 844 RAVKNVVETGRTVVCTIHQPSI----DIFEAFDDLILMKNG 880
A+ E GRT + H+ S D+ FD ++++ G
Sbjct: 567 AALDKARE-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L ++ + G AL+G SG GK+T++ +L ++ + R
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 739 S-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL-V 796
G Q I + ++ E++ + R+ ++ A+ N + Q I+ KY+ V
Sbjct: 1108 QLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEAN-IHQFIDSLPDKYNTRV 1165
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
G G LS Q++R+ IA LV P I+ +DE TS LD + +V A+ E GRT
Sbjct: 1166 GDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE-GRTC 1223
Query: 857 VCTIHQPSIDIFEAFDDLILMKNG 880
+ H+ S + D +++++NG
Sbjct: 1224 IVIAHRLS--TIQNADLIVVIQNG 1245
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 49/183 (26%)
Query: 4 LLGHPGCGKTT---LLSALSGKLSHSLKVSGE--VSYNGYRLDEFVPQKTSAYISQYDLH 58
L+G+ GCGK+T L+ L L + + G+ + N L E + +SQ +
Sbjct: 421 LVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII-----GVVSQEPVL 475
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
A T+ E I + G +M E+ K K + +AY
Sbjct: 476 FA-TTIAENIRY-------GREDVTMDEIEKAVK--------EANAY------------- 506
Query: 119 QTDYILKILGLDICADTIVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
D+I+K L DT+VG+ RG +SGGQK+R+ +V + L +DE ++ LD
Sbjct: 507 --DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 177 SST 179
+ +
Sbjct: 559 TES 561
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ--KTSAYISQYDLHIAE 61
L+G GCGK+T++ L ++G V +G + + Q + I + + +
Sbjct: 1064 LVGSSGCGKSTVVQLLE---RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGI--FPDPDVDAYMKAISVEGLEKNLQ 119
++ E I + G R S +E+++ K A I F D D Y
Sbjct: 1121 CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY-------------- 1161
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
+T VGD + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1162 --------------NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTT-------LMDVLSGRKTXXXXXXXXXX 725
++K++Q+L + + G AL+G SG GK+T L D L G +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN 458
Query: 726 XXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
Y + I G Q + T+ E++ + EI+ K + +
Sbjct: 459 VRYLR------EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 786 I--ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843
+ + D +LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V
Sbjct: 512 LPHQFD----TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ 566
Query: 844 RAVKNVVETGRTVVCTIHQPSI----DIFEAFDDLILMKNG 880
A+ E GRT + H+ S D+ FD ++++ G
Sbjct: 567 AALDKARE-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L ++ + G AL+G SG GK+T++ +L ++ + R
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 739 S-GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL-V 796
G Q I + ++ E++ + R+ ++ A+ N + Q I+ KY+ V
Sbjct: 1108 QLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEAN-IHQFIDSLPDKYNTRV 1165
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
G G LS Q++R+ IA LV P I+ +DE TS LD + +V A+ E GRT
Sbjct: 1166 GDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE-GRTC 1223
Query: 857 VCTIHQPSIDIFEAFDDLILMKNG 880
+ H+ S + D +++++NG
Sbjct: 1224 IVIAHRLS--TIQNADLIVVIQNG 1245
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 49/183 (26%)
Query: 4 LLGHPGCGKTT---LLSALSGKLSHSLKVSGE--VSYNGYRLDEFVPQKTSAYISQYDLH 58
L+G+ GCGK+T L+ L L + + G+ + N L E + +SQ +
Sbjct: 421 LVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII-----GVVSQEPVL 475
Query: 59 IAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNL 118
A T+ E I + G +M E+ K K + +AY
Sbjct: 476 FA-TTIAENIRY-------GREDVTMDEIEKAVK--------EANAY------------- 506
Query: 119 QTDYILKILGLDICADTIVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNGLD 176
D+I+K L DT+VG+ RG +SGGQK+R+ +V + L +DE ++ LD
Sbjct: 507 --DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 177 SST 179
+ +
Sbjct: 559 TES 561
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ--KTSAYISQYDLHIAE 61
L+G GCGK+T++ L ++G V +G + + Q + I + + +
Sbjct: 1064 LVGSSGCGKSTVVQLLE---RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGI--FPDPDVDAYMKAISVEGLEKNLQ 119
++ E I + G R S +E+++ K A I F D D Y
Sbjct: 1121 CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY-------------- 1161
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
+T VGD + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1162 --------------NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 33/244 (13%)
Query: 652 LTFEDVQY-YVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM--- 707
+T E+V + Y P RG N + G AL+G SG GK+T++
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLR-----------VNAGQTVALVGSSGCGKSTIISLL 464
Query: 708 ----DVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAW 763
DVL G+ T + F R + + N T+EE++
Sbjct: 465 LRYYDVLKGKITIDGVDVR-------DINLEFLRKNVAVVSQEPALFNCTIEENISLGKE 517
Query: 764 LRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS 823
E+ K + ++T+ +G +LVG G LS Q++R+ IA LV NP
Sbjct: 518 GITREEMVAACKMANAEKFIKTLP-NGYN-TLVGDRGTQ-LSGGQKQRIAIARALVRNPK 574
Query: 824 IIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883
I+ +DE TS LDA + IV +A+ + GRT + H+ S I A DLI+ G++
Sbjct: 575 ILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST-IRNA--DLIISCKNGQV 630
Query: 884 IYSG 887
+ G
Sbjct: 631 VEVG 634
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 31/225 (13%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTXXXXXXXXXXXXY 728
++++L ++ + PG AL+G SG GK+T++ D L G
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE---IFIDGSEIKTLN 1147
Query: 729 PKVQHTFARISGYCEQNDIHSPNITVEESVIFS------AWLRLSPEIDLKTKAEFVNEV 782
P +HT ++I+ ++ + + ++ E++I+ ++ L F+ E+
Sbjct: 1148 P--EHTRSQIAIVSQEPTLF--DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAEL 1203
Query: 783 LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ E + VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1204 PEGFE------TRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256
Query: 843 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
A+ E GRT + H+ + + A D I + + G II G
Sbjct: 1257 QEALDRARE-GRTCIVIAHRLNT-VMNA--DCIAVVSNGTIIEKG 1297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 47/182 (25%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLD----EFVPQKTSAYISQYDLHI 59
L+G GCGK+T++S L L + + G+++ +G + EF+ +K A +SQ + +
Sbjct: 449 LVGSSGCGKSTIISLL---LRYYDVLKGKITIDGVDVRDINLEFL-RKNVAVVSQ-EPAL 503
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
T+ E I KE I E++ A K + E K L
Sbjct: 504 FNCTIEENISLG-------------KEGITREEMV---------AACKMANAEKFIKTLP 541
Query: 120 TDYILKILGLDICADTIVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
Y +T+VGD RG +SGGQK+R+ +V + L +DE ++ LD+
Sbjct: 542 NGY-----------NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587
Query: 178 ST 179
+
Sbjct: 588 ES 589
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 51/185 (27%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS---AYISQ----YD 56
L+G GCGK+T+++ L + +L GE+ +G + P+ T A +SQ +D
Sbjct: 1110 LVGPSGCGKSTVVALLE-RFYDTL--GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
IAE + G + +M +V + +LA ++ ++ + EG E
Sbjct: 1167 CSIAENII----------YGLDPSSVTMAQVEEAARLA------NIHNFIAELP-EGFE- 1208
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRG--VSGGQKKRLTTGELIVGPTRALFMDEISNG 174
T VGD RG +SGGQK+R+ +V + L +DE ++
Sbjct: 1209 ------------------TRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 1247
Query: 175 LDSST 179
LD+ +
Sbjct: 1248 LDTES 1252
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L D+ F G + ++G +G+GKTTL+ +L+G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG---LLAAAGEIFLDGSPADPFLLRKN 82
Query: 739 SGYCEQNDIHSPNI---TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
GY QN S I TVEE V FS + E +++ + + +VL+ L
Sbjct: 83 VGYVFQN--PSSQIIGATVEEDVAFSLEIMGLDESEMRKR---IKKVLE----------L 127
Query: 796 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
VGL G++ LS Q++RL IA L + + +DEP S LD + + + ++++
Sbjct: 128 VGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK 187
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDL--ILMKNGGRIIYSG 887
G+ ++ H+ E DD+ IL + G I + G
Sbjct: 188 NEGKGIILVTHE-----LEYLDDMDFILHISNGTIDFCG 221
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 48/240 (20%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY-DLHIAE 61
+++G G GKTTLL L+G L+ +GE+ +G D F+ +K Y+ Q I
Sbjct: 41 VVVGKNGSGKTTLLKILAGLLA----AAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIG 96
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
TV E + FS G M++ IK
Sbjct: 97 ATVEEDVAFSLEIMGLDE--SEMRKRIK-------------------------------- 122
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
+L+++GL A DP+ +SGGQK+RL ++ TR L +DE + LD +
Sbjct: 123 KVLELVGLSGLA---AADPLN--LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 182 QIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP-RSYICKFFEDC 240
+I L+ L + L++ E D D ++ ++ G I + G ++ + F+D
Sbjct: 178 EIFQVLESLKNEGKGIILVT---HELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDV 234
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKV 731
F + K+ L ++ G ++G SGAGKTT M +++G
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 732 QHTFA----RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLK-TKAEFVNEVLQTI 786
R G Q PN+T E++ F P ++K +K E V +
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRVEEVA 125
Query: 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
++ I + L P LS Q++R+ +A LV +PS++ +DEP S LDAR V
Sbjct: 126 KILDIHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 847 KNV-VETGRTVVCTIHQPSIDIFEAFDDL-ILMKNGGRIIYSG 887
K V G T++ H P+ DIF D + +L+K G+++ G
Sbjct: 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK--GKLVQVG 223
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 143 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL 202
R +SG Q++R+ +V L +DE + LD+ + +K + T L+
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 203 LQPAPETFDLFDDVMLMAEGKIVYHG 228
PA + F + D V ++ +GK+V G
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVG 223
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.1 bits (144), Expect = 8e-09, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKV 731
F + K+ L ++ G ++G SGAGKTT M +++G
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 732 QHTFA----RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLK-TKAEFVNEVLQTI 786
R G Q PN+T E++ F P ++K +K E V +
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRVEEVA 125
Query: 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 846
++ I + L P LS Q++R+ +A LV +PS++ +DEP S LDAR V
Sbjct: 126 KILDIHHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 847 KNV-VETGRTVVCTIHQPSIDIFEAFDDL-ILMKNGGRIIYSG 887
K V G T++ H P+ DIF D + +L+K G+++ G
Sbjct: 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK--GKLVQVG 223
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 143 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL 202
R +SGGQ++R+ +V L +DE + LD+ + +K + T L+
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 203 LQPAPETFDLFDDVMLMAEGKIVYHG 228
PA + F + D V ++ +GK+V G
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVG 223
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVL-------------SGRKTXXXXXXXXXX 725
+L +I + + G + ++G SG+GK+TL ++ G
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 726 XXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+Q + + +P ++VE+ VI++A L +F++E+ +
Sbjct: 80 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA--------KLAGAHDFISELREG 130
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR
Sbjct: 131 YN------TIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + + GRTV+ H+ S + D +I+M+ G+I+ G
Sbjct: 184 MHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 221
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
+TIVG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 132 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 187
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+I ++ T D +++M +GKIV G
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVL-------------SGRKTXXXXXXXXXX 725
+L +I + + G + ++G SG+GK+TL ++ G
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 726 XXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+Q + + +P ++VE+ VI++A L +F++E+ +
Sbjct: 78 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA--------KLAGAHDFISELREG 128
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR
Sbjct: 129 YN------TIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + + GRTV+ H+ S + D +I+M+ G+I+ G
Sbjct: 182 MHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 219
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
+TIVG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 130 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 185
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+I ++ T D +++M +GKIV G
Sbjct: 186 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVL-------------SGRKTXXXXXXXXXX 725
+L +I + + G + ++G SG+GK+TL ++ G
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 726 XXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+Q + + +P ++VE+ VI++A L +F++E+ +
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA--------KLAGAHDFISELREG 134
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR
Sbjct: 135 YN------TIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + + GRTV+ H+ S + D +I+M+ G+I+ G
Sbjct: 188 MHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 225
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
+TIVG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 136 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 191
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+I ++ T D +++M +GKIV G
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 225
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 20/139 (14%)
Query: 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808
+P ++VE+ VI++A L +F++E+ + ++VG G +GLS Q
Sbjct: 103 NPGMSVEK-VIYAA--------KLAGAHDFISELREGYN------TIVGEQG-AGLSGGQ 146
Query: 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIF 868
R+R+ IA LV NP I+ DE TS LD + ++MR + + + GRTV+ H+ S
Sbjct: 147 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TV 203
Query: 869 EAFDDLILMKNGGRIIYSG 887
+ D +I+M+ G+I+ G
Sbjct: 204 KNADRIIVMEK-GKIVEQG 221
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
+TIVG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 132 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 187
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+I ++ T D +++M +GKIV G
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 221
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 29/249 (11%)
Query: 645 LPFEPLTLTFEDVQY-YVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGK 703
+ E L E++ Y Y D A+K N K+ G +TA++G +G GK
Sbjct: 1 MSLEDYILKVEELNYNYSDGTHALKGINMNIKR-------------GEVTAILGGNGVGK 47
Query: 704 TTLMDVLSG--RKTXXXXXXXXXXXXYPK--VQHTFARISGYCEQNDIHSPNITVEESVI 759
+TL +G + + Y + + I + D + +V + V
Sbjct: 48 STLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVS 107
Query: 760 FSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELV 819
F A PE +++ + + ++ GI++ L P LS Q+KR+ IA LV
Sbjct: 108 FGAVNMKLPEDEIRKRVD------NALKRTGIEH-LKDKP-THCLSFGQKKRVAIAGVLV 159
Query: 820 ANPSIIFMDEPTSGLDARAAAIVMR-AVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878
P ++ +DEPT+GLD + +M+ V+ E G T++ H IDI + D + +
Sbjct: 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVM 217
Query: 879 NGGRIIYSG 887
GR+I G
Sbjct: 218 KEGRVILQG 226
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 83 SMKEVIKLEKLAGI-FPDPDVDAYMKAI----SVEGLEKNLQTDYILKIL--GLDICADT 135
S K ++KL + GI F DPD + ++ S + L D I K + L
Sbjct: 75 SRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134
Query: 136 IVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITD 195
+ D +S GQKKR+ ++V + L +DE + GLD +I+ L +
Sbjct: 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 196 ATALISLLQPAPETFDLF----DDVMLMAEGKIVYHG 228
T +I A D+ D+V +M EG+++ G
Sbjct: 195 ITIII-----ATHDIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVL-------------SGRKTXXXXXXXXXX 725
+L +I + + G + ++G SG+GK+TL ++ G
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 726 XXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+Q + + +P ++VE+ VI++A L +F++E+ +
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA--------KLAGAHDFISELREG 134
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD + ++MR
Sbjct: 135 YN------TIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + + GRTV+ H+ S + D +I+M+ G+I+ G
Sbjct: 188 MHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQG 225
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
+TIVG+ G+SGGQ++R+ +V + L D+ ++ LD + I ++++ I
Sbjct: 136 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI---MRNMHKI 191
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+I ++ T D +++M +GKIV G
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQG 225
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 29/227 (12%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTXXXXXXXXX 724
+N + +L DI + G A +G+SG GK+TL+ DV SG+
Sbjct: 349 YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408
Query: 725 XXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEI----DLKTKAEFVN 780
+ Q G +Q++I + TV+E+++ E+ + +F+
Sbjct: 409 LTGSLRNQ------IGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIM 461
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+ Q + + VG GV LS Q++RL+IA + NP I+ +DE TS LD + +
Sbjct: 462 NLPQGYDTE------VGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESES 514
Query: 841 IVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
I+ A+ +V+ RT + H+ S I A D +++++N G I+ +G
Sbjct: 515 IIQEAL-DVLSKDRTTLIVAHRLS-TITHA-DKIVVIEN-GHIVETG 557
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 44/234 (18%)
Query: 5 LGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTV 64
+G G GK+TL++ + + SG++ +G+ + +F+ I +
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIG--------LVQ 421
Query: 65 RETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYIL 124
++ I FS D++KE I L + D +V K + NL Y
Sbjct: 422 QDNILFS----------DTVKENILLGRPTA--TDEEVVEAAKMANAHDFIMNLPQGY-- 467
Query: 125 KILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
DT VG+ RGV SGGQK+RL+ + + L +DE ++ LD +
Sbjct: 468 ---------DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP-RSYICK 235
I L L D T LI + T D ++++ G IV G R I K
Sbjct: 516 IQEALDVLSK--DRTTLI--VAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 20/213 (9%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 739
L++I + G AL+G SG+GK+TL+ ++G ++ R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK-DRNV 77
Query: 740 GYCEQNDIHSPNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTIELDGI--KYSL 795
G QN P++TV +++ F LR +P EID K V EV + + +D + +Y
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKMLHIDKLLNRYPW 132
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGR 854
LS Q++R+ IA LV P ++ +DEP S LDA V +K + E G
Sbjct: 133 -------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
T V H + + A D I + G I+ G
Sbjct: 186 TTVYVTHDQAEAL--AMADRIAVIREGEILQVG 216
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 52/236 (22%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ-KTSAYISQYDLHIAEM 62
LLG G GK+TLL ++G + SG++ ++ + E P+ + + Q M
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHM 90
Query: 63 TVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY 122
TV + I F ++L K P ++D ++ ++ K L D
Sbjct: 91 TVYKNIAFP----------------LELRKA----PREEIDKKVREVA-----KMLHIDK 125
Query: 123 ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQ 182
+L P + +SGGQ++R+ +V L +DE + LD+ +
Sbjct: 126 LLNRY------------PWQ--LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171
Query: 183 IVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI--------VYHGPR 230
+ + LK L T + + E + D + ++ EG+I VY+ P+
Sbjct: 172 VRAELKRLQKELGITT-VYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 17/199 (8%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXY--PKVQHTFARISGY 741
T + G L+G SG GKTT + +++G T Y PK ++ Y
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSY 93
Query: 742 CEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801
P++TV E++ F ++ P+ ++ + + E+LQ EL +Y
Sbjct: 94 AVW-----PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYP------- 140
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + + + +
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 862 QPSIDIFEAFDDLILMKNG 880
++ D + +M G
Sbjct: 201 HDQVEAMTMGDRIAVMNRG 219
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 46/228 (20%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA-- 60
+LLG GCGKTT L ++G + G + Y G R ++P K + +
Sbjct: 42 VLLGPSGCGKTTTLRMIAGLEEPT---EGRI-YFGDRDVTYLPPKDRNISMVFQSYAVWP 97
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
MTV E I F +K++K FP ++D ++ + + LQ
Sbjct: 98 HMTVYENIAFP----------------LKIKK----FPKDEIDKRVRWAA-----ELLQI 132
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
+ +L + SGGQ++R+ IV L MDE + LD+
Sbjct: 133 EELLNRYPAQL--------------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 178
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ + +K L T I + E + D + +M G+++ G
Sbjct: 179 VAMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 17/199 (8%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXY--PKVQHTFARISGY 741
T + G L+G SG GKTT + +++G T Y PK ++ Y
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSY 92
Query: 742 CEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801
P++TV E++ F ++ P+ ++ + + E+LQ EL +Y
Sbjct: 93 AVW-----PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYP------- 139
Query: 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + +K + + + +
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 862 QPSIDIFEAFDDLILMKNG 880
++ D + +M G
Sbjct: 200 HDQVEAMTMGDRIAVMNRG 218
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 46/228 (20%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA-- 60
+LLG GCGKTT L ++G + G + Y G R ++P K + +
Sbjct: 41 VLLGPSGCGKTTTLRMIAGLEEPT---EGRI-YFGDRDVTYLPPKDRNISMVFQSYAVWP 96
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
MTV E I F +K++K FP ++D ++ + + LQ
Sbjct: 97 HMTVYENIAFP----------------LKIKK----FPKDEIDKRVRWAA-----ELLQI 131
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
+ +L + SGGQ++R+ IV L MDE + LD+
Sbjct: 132 EELLNRYPAQL--------------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 177
Query: 181 FQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ + +K L T I + E + D + +M G+++ G
Sbjct: 178 VAMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVL-------------SGRKTXXXXXXXXXX 725
+L +I + + G + ++G SG+GK+TL ++ G
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 726 XXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+Q + + +P ++VE+ VI++A L +F++E+ +
Sbjct: 78 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA--------KLAGAHDFISELREG 128
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR
Sbjct: 129 YN------TIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + + GRTV+ I + + D +I+M+ G+I+ G
Sbjct: 182 MHKICK-GRTVI--IIAARLSTVKNADRIIVMEK-GKIVEQG 219
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
+TIVG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 130 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 185
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+I ++ T D +++M +GKIV G
Sbjct: 186 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 33/222 (14%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVL-------------SGRKTXXXXXXXXXX 725
+L +I + + G + ++G SG+GK+TL ++ G
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 726 XXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQT 785
+Q + + +P ++VE+ VI++A L +F++E+ +
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAA--------KLAGAHDFISELREG 134
Query: 786 IELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR
Sbjct: 135 YN------TIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 846 VKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + + GRTV+ I + + D +I+M+ G+I+ G
Sbjct: 188 MHKICK-GRTVI--IIAARLSTVKNADRIIVMEK-GKIVEQG 225
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
+TIVG+ G+SGGQ++R+ +V + L DE ++ LD + I ++++ I
Sbjct: 136 NTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI---MRNMHKI 191
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+I ++ T D +++M +GKIV G
Sbjct: 192 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQG 225
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 18/237 (7%)
Query: 656 DVQYYVDTPSAMKKRGFN------------QKKLQLLSDITGTFRPGILTALMGVSGAGK 703
D++ D P A++ R KK +L DIT +PG AL+G +G+GK
Sbjct: 335 DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGK 394
Query: 704 TTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAW 763
TT++++L K++ + R S D + TV+E++ +
Sbjct: 395 TTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP 454
Query: 764 LRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS 823
EI K + ++ + +G Y V LS QR+ L I +ANP
Sbjct: 455 GATDEEIKEAAKLTHSDHFIKHLP-EG--YETVLTDNGEDLSQGQRQLLAITRAFLANPK 511
Query: 824 IIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
I+ +DE TS +D + + A+ ++E G+T + H+ ++ + D +I++++G
Sbjct: 512 ILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHR--LNTIKNADLIIVLRDG 565
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 30/223 (13%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-------GRKTXXXXXXXXXXXXYP 729
L++L I R G + ++G SG+GK+T + L+ G
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 730 KVQH----TFARISGYCEQNDIHSPNITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQ 784
KV+ F R + + P++TV ++ + +R P + KA ++
Sbjct: 76 KVREEVGMVFQRFNLF--------PHMTVLNNITLAPMKVRKWPREKAEAKA------ME 121
Query: 785 TIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 844
++ G+K P LS Q +R+ IA L P I+ DEPTS LD V+
Sbjct: 122 LLDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 179
Query: 845 AVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+K + G T+V H+ + D +L +GG II G
Sbjct: 180 VMKQLANEGMTMVVVTHE--MGFAREVGDRVLFMDGGYIIEEG 220
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 145 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 204
+SGGQ +R+ + + + DE ++ LD +++S +K L + + ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 196
Query: 205 PAPETFDLFDDVMLMAEGKIVYHG 228
++ D V+ M G I+ G
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEG 220
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 30/223 (13%)
Query: 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS-------GRKTXXXXXXXXXXXXYP 729
L++L I R G + ++G SG+GK+T + L+ G
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 730 KVQH----TFARISGYCEQNDIHSPNITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQ 784
KV+ F R + + P++TV ++ + +R P + KA ++
Sbjct: 97 KVREEVGMVFQRFNLF--------PHMTVLNNITLAPMKVRKWPREKAEAKA------ME 142
Query: 785 TIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 844
++ G+K P LS Q +R+ IA L P I+ DEPTS LD V+
Sbjct: 143 LLDKVGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200
Query: 845 AVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+K + G T+V H+ + D +L +GG II G
Sbjct: 201 VMKQLANEGMTMVVVTHE--MGFAREVGDRVLFMDGGYIIEEG 241
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 145 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 204
+SGGQ +R+ + + + DE ++ LD +++S +K L + + ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 217
Query: 205 PAPETFDLFDDVMLMAEGKIVYHG 228
++ D V+ M G I+ G
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEG 241
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 24/213 (11%)
Query: 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXX---XXXXXXYPKVQHTFARI 738
DI G +G SG GK+TL+ +++G +T P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
G Q+ P+++V E++ F L + + + + V EVLQ L K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK---- 132
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET--GRTV 856
LS QR+R+ I LVA PS+ +DEP S LDA A + MR + + GRT+
Sbjct: 133 ----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 857 VCTIHQPSIDIFEAFD--DLILMKNGGRIIYSG 887
+ H D EA D I++ + GR+ G
Sbjct: 188 IYVTH----DQVEAMTLADKIVVLDAGRVAQVG 216
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 46/229 (20%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYI--SQYDLHI 59
+ +G GCGK+TLL ++G + + SG++ R+++ P + + Y L+
Sbjct: 32 VVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALY- 87
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
++V E + F + G + KEVI N +
Sbjct: 88 PHLSVAENMSFGLKLAG------AKKEVI----------------------------NQR 113
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
+ + ++L L D + +SGGQ++R+ G +V +DE + LD++
Sbjct: 114 VNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
Q+ + L H +I + E L D ++++ G++ G
Sbjct: 169 RVQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 24/213 (11%)
Query: 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXX---XXXXXXYPKVQHTFARI 738
DI G +G SG GK+TL+ +++G +T P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
G Q+ P+++V E++ F L + + + + V EVLQ L K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK---- 132
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET--GRTV 856
LS QR+R+ I LVA PS+ +DEP S LDA A + MR + + GRT+
Sbjct: 133 ----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 857 VCTIHQPSIDIFEAFD--DLILMKNGGRIIYSG 887
+ H D EA D I++ + GR+ G
Sbjct: 188 IYVTH----DQVEAMTLADKIVVLDAGRVAQVG 216
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 46/229 (20%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYI--SQYDLHI 59
+ +G GCGK+TLL ++G + + SG++ R+++ P + + Y L+
Sbjct: 32 VVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALY- 87
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
++V E + F + G + KEVI N +
Sbjct: 88 PHLSVAENMSFGLKLAG------AKKEVI----------------------------NQR 113
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
+ + ++L L D + +SGGQ++R+ G +V +DE + LD++
Sbjct: 114 VNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
Q+ + L H +I + E L D ++++ G++ G
Sbjct: 169 RVQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXYPKVQHTF 735
Q+L DI+ +P + A G SG GK+T+ +L + T +++
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75
Query: 736 ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPE-----IDLKTKAEFVNEVLQTIELDG 790
++I G+ Q+ T+ E++ + + E +DL FV + + +
Sbjct: 76 SQI-GFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE- 132
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V +A+ +++
Sbjct: 133 -----VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ GRT + H+ S I +A D I G+I SG
Sbjct: 187 K-GRTTLVIAHRLST-IVDA--DKIYFIEKGQITGSG 219
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 12/240 (5%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTF 735
K ++L I+ G + L+G +GAGKTT + ++S + H
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86
Query: 736 ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
++ Y + N+ E + F A S +++ E E+ E IK
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE--KIK--- 141
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT 855
VS S ++L IA L+ NP + +DEPTSGLD A V + +K + G T
Sbjct: 142 ---DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 856 VVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ--HSCKVIDYFESIPGVLKIKDNY 913
++ + H ++ E D I + + G I+ +G + + K + E V+K +N+
Sbjct: 199 ILVSSH--NMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSENF 256
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 24/213 (11%)
Query: 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXX---XXXXXXYPKVQHTFARI 738
DI G +G SG GK+TL+ +++G +T P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
G Q+ P+++V E++ F L + + + + V EVLQ L K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK---- 132
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET--GRTV 856
LS QR+R+ I LVA PS+ +D+P S LDA A + MR + + GRT+
Sbjct: 133 ----ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTM 187
Query: 857 VCTIHQPSIDIFEAFD--DLILMKNGGRIIYSG 887
+ H D EA D I++ + GR+ G
Sbjct: 188 IYVTH----DQVEAMTLADKIVVLDAGRVAQVG 216
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 46/229 (20%)
Query: 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYI--SQYDLHI 59
+ +G GCGK+TLL ++G + + SG++ R+++ P + + Y L+
Sbjct: 32 VVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALY- 87
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
++V E + F + G + KEVI N +
Sbjct: 88 PHLSVAENMSFGLKLAG------AKKEVI----------------------------NQR 113
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
+ + ++L L D + +SGGQ++R+ G +V +D+ + LD++
Sbjct: 114 VNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAAL 168
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
Q+ + L H +I + E L D ++++ G++ G
Sbjct: 169 RVQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 25/219 (11%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQ 732
N +Q+L +T T PG +TAL+G +G+GK+T+ +L + P VQ
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ 85
Query: 733 HTFARISGYCEQNDIHSPNITV-EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
+ + + +H+ V +E ++F R + L T+ + E+ G
Sbjct: 86 Y---------DHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGA 135
Query: 792 KYSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ G P G +G LS QR+ + +A L+ P ++ +D+ TS LDA V
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRV 195
Query: 843 MRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
R + E RTV+ HQ + + E ++ +K G
Sbjct: 196 QRLLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEG 232
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQ 732
N+ + +L +T T RPG +TAL+G +G+GK+T+ +L P+ +
Sbjct: 26 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 85
Query: 733 HTFARISGYCEQNDIHSPNITV-EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
H + +H V +E +F L+ + L T+ + E+ G
Sbjct: 86 HRY-----------LHRQVAAVGQEPQVFGRSLQENIAYGL-TQKPTMEEITAAAVKSGA 133
Query: 792 KYSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ GLP S LS QR+ + +A L+ P ++ +D+ TS LDA + V
Sbjct: 134 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
Query: 843 MRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881
+ + E V I Q + + E D ++ ++ G
Sbjct: 194 EQLLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862
LS Q++R++IA L P ++ DEPTS LD V+R ++ + E G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 17/202 (8%)
Query: 670 RGFNQKKL----QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS--GRKTXXXXXXXX 723
R N KK+ ++L I+ + + G +++G SG+GK+TL+ +L T
Sbjct: 6 RAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG 65
Query: 724 XXXXYPKVQHTFA---RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVN 780
Y + R G+ Q P +T E+VI P+ + K + E++
Sbjct: 66 KEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLL 125
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
L G+ L P LS +++R+ IA L P ++F DEPT LD+
Sbjct: 126 SEL------GLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 841 IVMRAVKNVVETGRTVVCTIHQ 862
VM + E G ++V H+
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHE 199
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 60/233 (25%)
Query: 4 LLGHPGCGKTTLLSAL-------SGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYD 56
++G G GK+TLL L GK+ K EV Y + + + ++ Q+
Sbjct: 35 IIGASGSGKSTLLYILGLLDAPTEGKVFLEGK---EVDYTNEKELSLLRNRKLGFVFQFH 91
Query: 57 LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEK 116
I E+T E + ++ + K+ P +A +
Sbjct: 92 YLIPELTALENV------------------IVPMLKMG----KPKKEAKERG-------- 121
Query: 117 NLQTDYILKILGLDICADTIVGDPMRRG---VSGGQKKRLTTGELIVGPTRALFMDEISN 173
+Y+L LGL GD + R +SGG+++R+ + LF DE +
Sbjct: 122 ----EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 174 GLDSSTTFQIVS-FLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225
LDS+ T +++ FLK I + I ++ E +L + M +GK+V
Sbjct: 170 NLDSANTKRVMDIFLK----INEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRTVVCTIHQ 862
LS Q++R+ IA L NP II D+PT LD++ +M+ +K + E G+TVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH- 204
Query: 863 PSIDIFEAFDDLILMKNGGRIIY 885
D+ + + G RIIY
Sbjct: 205 ----------DINVARFGERIIY 217
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 43/212 (20%)
Query: 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQH 733
+ ++ + D + + G +TAL+G SG+GK+T++ +L Y
Sbjct: 354 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL--------------LRLYDPASG 399
Query: 734 TFARISGYCEQNDIHSPN---------ITVEESVIFS-------AWLRLSPEIDLKTKAE 777
T + + +DI N +E ++FS A+ P + +
Sbjct: 400 TIS-----LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQ 454
Query: 778 FVNEVLQTIEL-----DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832
V EV + G ++VG GV LS Q++R+ IA L+ NP I+ +DE TS
Sbjct: 455 RVAEVANAVAFIRNFPQGFN-TVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATS 512
Query: 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPS 864
LDA +V A+ +++ GRTV+ H+ S
Sbjct: 513 ALDAENEYLVQEALDRLMD-GRTVLVIAHRLS 543
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 42/231 (18%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+T L+G G GK+T+LS L L SG +S +G+ + + P + I
Sbjct: 372 VTALVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS---- 424
Query: 61 EMTVRETIDFSAR-CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
+E I FS + + AD V E++ + + A+++ N
Sbjct: 425 ----QEPILFSCSIAENIAYGADDPSSVTA-EEIQRVAEVANAVAFIR---------NFP 470
Query: 120 TDYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
+ +T+VG+ +GV SGGQK+R+ ++ + L +DE ++ LD+
Sbjct: 471 QGF-----------NTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ + L L+ + L T + V ++ +GKI +G
Sbjct: 517 ENEYLVQEALDRLMDGRTVLVIAHRLS----TIKNANMVAVLDQGKITEYG 563
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 7/194 (3%)
Query: 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQH 733
+ ++ + D + + G +TAL+G SG+GK+T++ +L ++
Sbjct: 385 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNP 444
Query: 734 TFARIS-GYCEQNDIHSPNITVEESVIFSA--WLRLSPEIDLKTKAEFVNEVLQTIELDG 790
+ R G Q I + ++ E++ + A ++ E +++ AE N V
Sbjct: 445 VWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQ 502
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
++VG GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V A+ ++
Sbjct: 503 GFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 561
Query: 851 ETGRTVVCTIHQPS 864
+ GRTV+ H S
Sbjct: 562 D-GRTVLVIAHHLS 574
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 42/231 (18%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+T L+G G GK+T+LS L L SG +S +G+ + + P + I
Sbjct: 403 VTALVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS---- 455
Query: 61 EMTVRETIDFSAR-CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
+E I FS + + AD V E++ + + A+++ N
Sbjct: 456 ----QEPILFSCSIAENIAYGADDPSSVTA-EEIQRVAEVANAVAFIR---------NFP 501
Query: 120 TDYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDS 177
+ +T+VG+ +GV SGGQK+R+ ++ + L +DE ++ LD+
Sbjct: 502 QGF-----------NTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 547
Query: 178 STTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ + L L+ + L T + V ++ +GKI +G
Sbjct: 548 ENEYLVQEALDRLMDGRTVLVIAHHLS----TIKNANMVAVLDQGKITEYG 594
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRTVVCTIHQ 862
LS Q++R+ IA L NP II D+PT LD++ +M+ +K + E G+TVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH- 204
Query: 863 PSIDIFEAFDDLILMKNGGRIIY 885
D+ + + G RIIY
Sbjct: 205 ----------DINVARFGERIIY 217
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 30/228 (13%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLM-------DVLSGRKTXXXXXXXXX 724
+ K+ LS ++ + G AL+G SG+GK+T+ DV SG +
Sbjct: 351 YQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG--SICLDGHDVR 408
Query: 725 XXXYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPE-IDLKTKA----EFV 779
++ FA +S ++H N T+ ++ ++A + E I+ + EF+
Sbjct: 409 DYKLTNLRRHFALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFI 463
Query: 780 NEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839
+ Q ++ +++G G S LS QR+R+ IA L+ + ++ +DE TS LD +
Sbjct: 464 ENMPQGLD------TVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516
Query: 840 AIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ A+ ++ +TV+ H+ S I +A D IL+ + G II G
Sbjct: 517 RAIQAALDE-LQKNKTVLVIAHRLST-IEQA--DEILVVDEGEIIERG 560
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
DT++G+ +SGGQ++R+ ++ L +DE ++ LD+ + I + L L
Sbjct: 471 DTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK- 528
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ T L+ + T + D+++++ EG+I+ G
Sbjct: 529 -NKTVLV--IAHRLSTIEQADEILVVDEGEIIERG 560
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGRTVVCTIHQ 862
LS Q++R+ IA L NP II DEPT LD++ + + +K + E G+TVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH- 204
Query: 863 PSIDIFEAFDDLILMKNGGRIIY 885
D+ + + G RIIY
Sbjct: 205 ----------DINVARFGERIIY 217
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 98/200 (49%), Gaps = 12/200 (6%)
Query: 690 GILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHS 749
G AL+G +G+GK+T+ +L +++ I G Q+ I
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF 105
Query: 750 PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI--ELDGIKYSLVGLPGVSGLSTE 807
N T++ ++++ E+ TK+ + + ++ + + D ++VG G+ LS
Sbjct: 106 -NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWD----TIVGNKGMK-LSGG 159
Query: 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDI 867
+R+R+ IA L+ +P I+ DE TS LD++ + +AV++ + RT++ H+ S
Sbjct: 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS--T 216
Query: 868 FEAFDDLILMKNGGRIIYSG 887
+ + +IL+ N G+I+ G
Sbjct: 217 ISSAESIILL-NKGKIVEKG 235
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 134 DTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHI 193
DTIVG+ + +SGG+++R+ ++ + + DE ++ LDS T + F K + +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL---FQKAVEDL 201
Query: 194 TDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236
LI ++ T + ++L+ +GKIV G + K
Sbjct: 202 RKNRTLI-IIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 107/226 (47%), Gaps = 14/226 (6%)
Query: 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHT 734
+++ L +I G AL+G SG+GK+T+ +++ + + ++T
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYT 411
Query: 735 FARISGYCE--QNDIHSPNITVEESVIFSAWLRLSPE-IDLKTKAEFVNEVLQTIELDGI 791
A + ++H N TV ++ ++ S E I+ + + + + ++ +G+
Sbjct: 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD-NGL 470
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
+++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + A+ ++
Sbjct: 471 D-TIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQ 527
Query: 852 TGRTVVCTIHQPSIDIFEAFDDLILMKNG---GRIIYSGPLGQHSC 894
RT + H+ S E D+++++++G R +S L QH
Sbjct: 528 KNRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELLAQHGV 571
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 110 SVEGLEKNLQTDYILKILG-LDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRAL 166
S E +E+ + Y + + +D DTI+G+ GV SGGQ++R+ ++ + L
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPIL 502
Query: 167 FMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVY 226
+DE ++ LD+ + I + L L + T+L+ + T + D+++++ +G IV
Sbjct: 503 ILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRLSTIEQADEIVVVEDGIIVE 558
Query: 227 HGPRS 231
G S
Sbjct: 559 RGTHS 563
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTF 735
K++ + ++ + G AL+G SG GKTT + +L+G + +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 736 ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
+ G QN P++TV E++ F R + +++ + V E+ + + +D + L
Sbjct: 75 REV-GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIARKLLIDNL---L 127
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNV-VETGR 854
P + LS Q++R+ +A LV P ++ DEP S LDA I+ +K++ E G
Sbjct: 128 DRKP--TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185
Query: 855 TVVCTIH 861
T V H
Sbjct: 186 TSVYVTH 192
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 46/227 (20%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ--KTSAYISQYDLHIAE 61
LLG GCGKTT L L+G + SGE+ ++ +++ P+ + Y L+
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALY-PH 89
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
MTV E I F R R S EV K V + + L D
Sbjct: 90 MTVFENIAFPLRA-----RRISKDEVEK--------------------RVVEIARKLLID 124
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
+L D +SGGQ++R+ +V + L DE + LD++
Sbjct: 125 NLL--------------DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRM 170
Query: 182 QIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ + +KHL T+ + + E + + + +GK+V +G
Sbjct: 171 IMRAEIKHLQQELGITS-VYVTHDQAEAMTMASRIAVFNQGKLVQYG 216
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQ 732
N +Q+L +T T PG +TAL+G +G+GK+T+ +L + P VQ
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ 85
Query: 733 HTFARISGYCEQNDIHSPNITV-EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
+ + + +H+ V +E ++F R + L T+ + E+ G
Sbjct: 86 Y---------DHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGA 135
Query: 792 KYSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ G P G +G LS QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 843 MRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
R + E RTV+ Q + + E ++ +K G
Sbjct: 196 QRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 26/246 (10%)
Query: 636 AGPKRGKMVLPFEPLTLTFEDVQY-YVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTA 694
AGP R F+ + FE+V + Y D + L D++ T PG A
Sbjct: 44 AGPLR------FQKGRIEFENVHFSYAD-------------GRETLQDVSFTVMPGQTLA 84
Query: 695 LMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITV 754
L+G SGAGK+T++ +L +V R D N T+
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTI 814
+++ + + E++ +A +++ + +G + + VG G+ LS +++R+ I
Sbjct: 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP-EGYR-TQVGERGLK-LSGGEKQRVAI 201
Query: 815 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 874
A ++ P II +DE TS LD + ++ V RT + H+ S + D +
Sbjct: 202 ARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVV--NADQI 258
Query: 875 ILMKNG 880
+++K+G
Sbjct: 259 LVIKDG 264
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 11/205 (5%)
Query: 690 GILTALMGVSGAGKTTLMDVLSG------RKTXXXXXXXXXXXXYPKVQHTFARISGYCE 743
G + ALMG +GAGK+TL +L+G + P + +
Sbjct: 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF-- 86
Query: 744 QNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803
Q + P +T+ + + +L E+ + AEF +V + +EL S + G
Sbjct: 87 QYPVEVPGVTIANFLRLALQAKLGREVGV---AEFWTKVKKALELLDWDESYLSRYLNEG 143
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
S ++KR I LV P+ +DE SGLD A +V R V + + H
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 864 SIDIFEAFDDLILMKNGGRIIYSGP 888
I + D + +M +G + GP
Sbjct: 204 RILNYIQPDKVHVMMDGRVVATGGP 228
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 51/237 (21%), Positives = 99/237 (41%), Gaps = 56/237 (23%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYIS-QYDLHI 59
L+G G GK+TL L+G ++++ GE+ +G + E P + +++ QY + +
Sbjct: 34 LMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
+T+ + + + KL + G+ E +
Sbjct: 93 PGVTIANFLRLALQA--------------KLGREVGV-----------------AEFWTK 121
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV-GPTRALFMDEISNGLDSS 178
L++L D ++ + + G SGG+KKR +L+V PT A+ +DE +GLD
Sbjct: 122 VKKALELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV-LDETDSGLDID 177
Query: 179 TTFQIVSFLKHL-------VHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ + + + IT +++ +QP D V +M +G++V G
Sbjct: 178 ALKVVARGVNAMRGPNFGALVITHYQRILNYIQP--------DKVHVMMDGRVVATG 226
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 53/221 (23%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
L + G + A++G +G GK+TL+D+L G
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG-------------------------- 53
Query: 739 SGYCEQNDIHSP---NITVEESVIFSAWLRLSP------EIDLKTKAEFVNEV------- 782
IH P I V +S+ F SP +I L ++ +N
Sbjct: 54 --------IHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD 105
Query: 783 --LQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
+ LD + + + + LS QR+ + IA + + +I +DEPTS LD
Sbjct: 106 YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQD 165
Query: 841 IVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNG 880
IV+ + ++ ++ TVV T HQP+ + A L+L K
Sbjct: 166 IVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 121 DYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTT 180
DY + + LD T + +SGGQ++ + I + + +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 181 FQIVSFLKHLVHITDATALISLLQP 205
++S L L + T + + QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQ 732
N +Q+L +T T PG +TAL+G +G+GK+T+ +L + P VQ
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ 85
Query: 733 HTFARISGYCEQNDIHSPNITV-EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791
+ + + +H+ V +E ++F R + L T+ + E+ G
Sbjct: 86 Y---------DHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGA 135
Query: 792 KYSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 842
+ G P G +G L+ QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 843 MRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880
R + E RTV+ Q + + E ++ +K G
Sbjct: 196 QRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTF-----ARISGYC 742
+ G L+G SG GKTT + +++G + + R
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 743 EQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802
Q+ P++TV +++ F LR P ++ + V E+L EL K
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK--------PR 138
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 845
LS QR+R+ + +V P + MDEP S LDA+ + MRA
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRA 180
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 54/229 (23%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE------FVPQK---TSAYIS 53
+LLG GCGKTT L ++G S G++ Y G +L FVP K +
Sbjct: 33 ILLGPSGCGKTTTLRMIAGLEEPS---RGQI-YIGDKLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 54 QYDLHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEG 113
Y L+ MTV + I F +KL K+ P ++D ++ ++
Sbjct: 89 SYALY-PHMTVYDNIAFP----------------LKLRKV----PRQEIDQRVREVA--- 124
Query: 114 LEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISN 173
++LGL T + + R +SGGQ++R+ G IV + MDE +
Sbjct: 125 -----------ELLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 174 GLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEG 222
LD+ ++ + LK L T I + E + D + +M G
Sbjct: 169 NLDAKLRVRMRAELKKLQRQLGVTT-IYVTHDQVEAMTMGDRIAVMNRG 216
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 739
L +I G AL+G SG+GK+T+ +++ + + ++T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 740 GYCE--QNDIHSPNITVEESVIFSAWLRLSPE-IDLKTKAEFVNEVLQTIELDGIKYSLV 796
++H N TV ++ ++ + S E I+ + + + + ++D +++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVI 474
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
G GV LS QR+R+ IA L+ + I+ +DE TS LD + + A+ ++ RT
Sbjct: 475 GENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTS 532
Query: 857 VCTIHQPSIDIFEAFDDLILMKNG 880
+ H+ S E D+++++++G
Sbjct: 533 LVIAHRLS--TIEKADEIVVVEDG 554
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 103/230 (44%), Gaps = 48/230 (20%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIA 60
L+G G GK+T+ S ++ GE+ +G+ L E+ + A +SQ ++H+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREYTLASLRNQVALVSQ-NVHLF 429
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQT 120
TV I ++ Q + + ++E ++ AY
Sbjct: 430 NDTVANNIAYARTEQ---YSREQIEEAARM-------------AY-------------AM 460
Query: 121 DYILKILGLDICADTIVGDPMRRGV--SGGQKKRLTTGELIVGPTRALFMDEISNGLDSS 178
D+I K +D DT++G+ GV SGGQ++R+ ++ + L +DE ++ LD+
Sbjct: 461 DFINK---MDNGLDTVIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 179 TTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
+ I + L L + T+L+ + T + D+++++ +G IV G
Sbjct: 515 SERAIQAALDELQK--NRTSLV--IAHRLSTIEKADEIVVVEDGVIVERG 560
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 27/203 (13%)
Query: 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYP-KVQHTFA 736
QL+ D G + G + ++G +G GKTT +L G T K Q F
Sbjct: 283 QLVVD-NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFP 341
Query: 737 RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796
G +Q +L + + L T + F EV + + L + S
Sbjct: 342 NYDGTVQQ------------------YLENASKDALSTSSWFFEEVTKRLNLHRLLES-- 381
Query: 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856
V+ LS + ++L IA L + +D+P+S LD IV +A+K V + V
Sbjct: 382 ---NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 857 VCTI-HQPSIDIFEAFDDLILMK 878
I H SI + A D +I+ K
Sbjct: 439 TFIIDHDLSIHDYIA-DRIIVFK 460
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 779 VNEVLQTIELDGIKYSLVGLPGVSGL--------STEQRKRLTIAVELVANPSIIFMDEP 830
VNE+L I+ G K + L ++ L S +RL +A L+ + D+P
Sbjct: 106 VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQP 165
Query: 831 TSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890
+S LD R + +A++ +++ + V+ H + + + DLI + G +Y
Sbjct: 166 SSYLDVRERMNMAKAIRELLKN-KYVIVVDH--DLIVLDYLTDLIHIIYGESSVYGRVSK 222
Query: 891 QHSCKV 896
++ +V
Sbjct: 223 SYAARV 228
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 50/257 (19%)
Query: 643 MVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAG 702
+ LP +++FE+V++ R F +LS + + +PG L A++G +G+G
Sbjct: 333 LALPNVEGSVSFENVEF----------RYFENTD-PVLSGVNFSVKPGSLVAVLGETGSG 381
Query: 703 KTTLMDVL-------SGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNITVE 755
K+TLM+++ GR K++ IS ++ + S T++
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTV-----KLKDLRGHISAVPQETVLFSG--TIK 434
Query: 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP---------GVSGLST 806
E++ W R D E+++ ++ I ++ LP G S
Sbjct: 435 ENL---KWGREDATDD---------EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482
Query: 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866
Q++RL+IA LV P ++ +D+ TS +D ++ +K + T + T P+
Sbjct: 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT-- 540
Query: 867 IFEAFDDLILMKNGGRI 883
D IL+ + G++
Sbjct: 541 --ALLADKILVLHEGKV 555
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 143 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISL 202
R SGGQK+RL+ +V + L +D+ ++ +D T +I+ LK T +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY---TKGCTTFII 534
Query: 203 LQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240
Q P L D ++++ EGK+ G + E C
Sbjct: 535 TQKIPTAL-LADKILVLHEGKVAGFGTHK---ELLEHC 568
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 28/210 (13%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDI 747
+ G + ++G +G GK+T + +L+G+ + V F G QN
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQ---LIPNLCGDNDSWDGVIRAF---RGNELQNYF 98
Query: 748 HSPNITVEESVIFSAWLRLSPE------IDLKTKAEF---VNEVLQTIELDGIKYSLVGL 798
V+ ++ L P+ I+L KA+ + EV++ +EL+ +
Sbjct: 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLER---- 154
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVC 858
+ LS + +R+ IA L+ N + F DEP+S LD R RA++ + E G++V+
Sbjct: 155 -EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213
Query: 859 TIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888
H + + + D+I ++Y P
Sbjct: 214 VEH--DLAVLDYLSDII------HVVYGEP 235
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTI 860
V+ LS + +R+ IA L+ + I +DEP++ LD V RA++++ E +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 861 HQPSIDIFEAFDDLILMK 878
+ I D L + +
Sbjct: 459 EHDVLXIDYVSDRLXVFE 476
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 106 MKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRA 165
+ I L N +LK LG+ D V + +SGG+ +R+ ++
Sbjct: 368 LSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADI 422
Query: 166 LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALI 200
+DE S LD + ++HL + TAL+
Sbjct: 423 YLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALV 457
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 92/237 (38%), Gaps = 54/237 (22%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ---KTSAYISQYDL 57
M ++G G GK+TLL L+G LS S GE G L+ + P+ +T A + QY
Sbjct: 39 MVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSE 95
Query: 58 HIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKN 117
+V E I G ++++V+ D A
Sbjct: 96 LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMA-----------QTDCLALA--------- 135
Query: 118 LQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV-----GPT-RALFMDEI 171
Q DY R +SGG+++R+ ++ PT R LF+DE
Sbjct: 136 -QRDY--------------------RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEP 174
Query: 172 SNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
++ LD + L+ L + A+ +L D +ML+A+GK+V G
Sbjct: 175 TSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG 230
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 14/221 (6%)
Query: 672 FNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKV 731
++ ++ L++D++ G + A++G +GAGK+TL+ +L+G +
Sbjct: 19 YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW 78
Query: 732 Q-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG 790
Q AR Q + +V E + + +P + + + QT D
Sbjct: 79 QPKALARTRAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQALQQVMAQT---DC 131
Query: 791 IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS----IIFMDEPTSGLDARAAAIVMRAV 846
+ + +SG +QR +L + + P +F+DEPTS LD +R +
Sbjct: 132 LALAQRDYRVLSG-GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL 190
Query: 847 KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ + VC + +++ + D I++ G+++ G
Sbjct: 191 RQLTRQEPLAVCCVLH-DLNLAALYADRIMLLAQGKLVACG 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS +++R+ IA +V P I+ +DEP GLD ++R V+ G+TV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 864 SIDIFEAFDDLILMKNGGRI 883
+ D +++++ G ++
Sbjct: 201 ET-VINHVDRVVVLEKGKKV 219
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 48/231 (20%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY--DLHIA 60
L+ G+ G GK+TLL ++G + + SG+V Y+G R + ++ QY D A
Sbjct: 39 LVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 95
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPD-VDAYMKAISVEGLEKNLQ 119
E E + F+ + +PD D V KA+ GL+ +
Sbjct: 96 ERVFDE-VAFAVK---------------------NFYPDRDPVPLVKKAMEFVGLDFDSF 133
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
D + L SGG+K+R+ +IV L +DE GLD
Sbjct: 134 KDRVPFFL------------------SGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 175
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230
++ ++ + LIS + D V+++ +GK V+ G R
Sbjct: 176 KTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLEKGKKVFDGTR 224
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS +++R+ IA +V P I+ +DEP GLD ++R V+ G+TV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 864 SIDIFEAFDDLILMKNGGRI 883
+ D +++++ G ++
Sbjct: 199 ET-VINHVDRVVVLEKGKKV 217
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 48/231 (20%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY--DLHIA 60
L+ G+ G GK+TLL ++G + + SG+V Y+G R + ++ QY D A
Sbjct: 37 LVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 93
Query: 61 EMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPD-VDAYMKAISVEGLEKNLQ 119
E E + F+ + +PD D V KA+ GL+ +
Sbjct: 94 ERVFDE-VAFAVK---------------------NFYPDRDPVPLVKKAMEFVGLDFDSF 131
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
D + L SGG+K+R+ +IV L +DE GLD
Sbjct: 132 KDRVPFFL------------------SGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230
++ ++ + LIS + D V+++ +GK V+ G R
Sbjct: 174 KTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLEKGKKVFDGTR 222
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXYPKVQHTFA- 736
+ D++ + G L+G SG GKTT + ++G T P+ + F
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPE-KGVFVP 80
Query: 737 ---RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
R Q+ P+ TV +++ F LR P+ ++ + V E L EL K
Sbjct: 81 PKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRK- 139
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 140 -------PRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 44/229 (19%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQYDLHI 59
M LLG G GKTT+L ++G L K G+V G R+ + PQK + + Q
Sbjct: 43 MVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVTDLPPQKRNVGLVFQNYALF 99
Query: 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQ 119
MTV + + F R EK P ++DA ++
Sbjct: 100 QHMTVYDNVSFGLR-----------------EKRV---PKDEMDARVRE----------- 128
Query: 120 TDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSST 179
+L+ + L+ A+ + +SGGQ++R+ + + L DE +D+
Sbjct: 129 ---LLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 180 TFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
++ +F++ VH + + E ++ D V+++ EG + G
Sbjct: 181 RRELRTFVRQ-VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 688 RPGILTALMGVSGAGKTTLMDVLSG--RKTXXXXXXXXXXXXYPKVQHTFARISGYCEQN 745
R G + L+G SG+GKTT++ +++G R T Q R G QN
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---RNVGLVFQN 95
Query: 746 DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805
++TV ++V F + P+ ++ + V E+L+ + L+ LS
Sbjct: 96 YALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRF-----PHELS 147
Query: 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPS 864
Q++R+ +A L P ++ DEP + +D + + V+ V E G T V H
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207
Query: 865 IDIFEAFDDLILMKNG 880
+ E D ++++ G
Sbjct: 208 -EALEVADRVLVLHEG 222
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 9/162 (5%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L I+ G L G++GAGKTTL+++L+ + KV ++ +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 739 S---GYCEQNDIH--SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793
G+ + + V + VI A+ + D+ E NE Q ++L G
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD--EIRNEAHQLLKLVGX-- 151
Query: 794 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
S + LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 152 SAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS +R+R+ +A LV P ++ +DEP S +D + ++M ++ V + +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 864 SIDIFEAFDDLILMKNGGRIIYSGPLGQ 891
I+ D++ +M N GRI+ G L +
Sbjct: 187 LIEAAMLADEVAVMLN-GRIVEKGKLKE 213
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 145 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQ 204
+SGG+++R+ +V R L +DE + +D T ++ L+ + D ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTH 185
Query: 205 PAPETFDLFDDVMLMAEGKIVYHG 228
E L D+V +M G+IV G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 26/217 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 739
L ++G R G + L+G +GAGK+TL+ ++G + +Q +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG-----------SIQFAGQPLE 64
Query: 740 GYCEQN-DIHSPNITVEESVIFSA--WLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSL 795
+ +H ++ +++ F+ W L+ KT+ E +N+V + LD + S
Sbjct: 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 796 VGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRAVKNVV 850
L G QR RL V + ANP+ ++ +D+P + LD + + + + +
Sbjct: 125 NQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS 180
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ G +V + H + + A +L GG+++ SG
Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 739
L ++G R G + L+G +GAGK+TL+ +G + +Q +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKG-----------SIQFAGQPLE 64
Query: 740 GYCEQN-DIHSPNITVEESVIFSA--WLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSL 795
+ +H ++ +++ F+ W L+ KT+ E +N+V + LD + S
Sbjct: 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 796 VGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRAVKNVV 850
L G QR RL V + ANP+ ++ +DEP + LD + + + + +
Sbjct: 125 NQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ G +V + H + + A +L GG+ + SG
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 739
L ++G R G + L+G +GAGK+TL+ ++G + +Q +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG-----------SIQFAGQPLE 64
Query: 740 GYCEQN-DIHSPNITVEESVIFSA--WLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSL 795
+ +H ++ +++ F+ W L+ KT+ E +N+V + LD + S
Sbjct: 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 796 VGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRAVKNVV 850
L G QR RL V + ANP+ ++ +D+P LD + + + + +
Sbjct: 125 NQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALS 180
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ G +V + H + + A +L GG+++ SG
Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C QN P T++E++I ++ +K + ++ + E D I ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKA-CQLEEDISKFAEKDNI---VLGE 155
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G++ LS QR R+++A + + + +D P LD
Sbjct: 156 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARIS 739
L ++G R G + L+G +GAGK+TL+ +G + +Q +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKG-----------SIQFAGQPLE 64
Query: 740 GYCEQN-DIHSPNITVEESVIFSA--WLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSL 795
+ +H ++ +++ F+ W L+ KT+ E +N+V + LD + S
Sbjct: 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 796 VGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRAVKNVV 850
L G QR RL V + ANP+ ++ +DEP + LD + + + + +
Sbjct: 125 NQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
Query: 851 ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ G +V + H + + A +L GG+ + SG
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C QN P T++E++I ++ +K + ++ + E D I ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKA-CQLEEDISKFAEKDNI---VLGE 155
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G++ LS QR R+++A + + + +D P LD
Sbjct: 156 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 23/145 (15%)
Query: 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810
++TVE+++ F A + P+I K L+T+ G+ Y +G P + LS + +
Sbjct: 806 DMTVEDALDFFASI---PKIKRK---------LETLYDVGLGYMKLGQPATT-LSGGEAQ 852
Query: 811 RLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDI 867
R+ +A EL ++ +DEPT+GL A ++ + +V+ G TV+ H ++D+
Sbjct: 853 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 910
Query: 868 FEAFDDLILM-----KNGGRIIYSG 887
+ D +I + GG+I+ G
Sbjct: 911 IKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 23/145 (15%)
Query: 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810
++TVE+++ F A + P+I K L+T+ G+ Y +G P + LS + +
Sbjct: 504 DMTVEDALDFFASI---PKIKRK---------LETLYDVGLGYMKLGQPATT-LSGGEAQ 550
Query: 811 RLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDI 867
R+ +A EL ++ +DEPT+GL A ++ + +V+ G TV+ H ++D+
Sbjct: 551 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 608
Query: 868 FEAFDDLILM-----KNGGRIIYSG 887
+ D +I + GG+I+ G
Sbjct: 609 IKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 83
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++IF + + ++ + E D I ++G
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 138
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G++ LS QR R+++A + + + +D P LD
Sbjct: 139 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 23/145 (15%)
Query: 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810
+ TVE+++ F A + P+I K L+T+ G+ Y +G P + LS + +
Sbjct: 806 DXTVEDALDFFASI---PKIKRK---------LETLYDVGLGYXKLGQPATT-LSGGEAQ 852
Query: 811 RLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDI 867
R+ +A EL ++ +DEPT+GL A ++ + +V+ G TV+ H ++D+
Sbjct: 853 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 910
Query: 868 FEAFDDLILM-----KNGGRIIYSG 887
+ D +I + GG+I+ G
Sbjct: 911 IKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 71
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++IF + + ++ + E D I ++G
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 126
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G++ LS QR R+++A + + + +D P LD
Sbjct: 127 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 779 VNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLD 835
+ LQ + G+ Y +G P + LS + +R+ +A EL + + +DEPT GL
Sbjct: 782 IKRTLQVLHDVGLGYVKLGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840
Query: 836 ARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM-----KNGGRIIYSG 887
++ + +V+ G TV+ H ++D+ + D +I + K GG I+ +G
Sbjct: 841 FEDVRKLVEVLHRLVDRGNTVIVIEH--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK 792
H F +S E + + N+T E I L+ +++ + EF+ +V G++
Sbjct: 407 HEFTELSISEELEFLKNLNLTEREREIVGELLK-----EIEKRLEFLVDV-------GLE 454
Query: 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRAVKNVV 850
Y + + LS + +R+ +A ++ + + I +DEPT GL R +++ +K +
Sbjct: 455 YLTLSRSATT-LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLR 513
Query: 851 ETGRTVVCTIHQPSI 865
+ G TV+ H +
Sbjct: 514 DLGNTVIVVEHDEEV 528
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 782 VLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARA 838
L T+ G+ Y +G P LS + +R+ +A EL + ++ +DEPT+GL
Sbjct: 710 ALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD 768
Query: 839 AAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM-----KNGGRIIYSG 887
+ R + +V+ G TV+ H+ + + A D ++ + ++GGR++ G
Sbjct: 769 VERLQRQLVKLVDAGNTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLVAQG 820
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 804 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
LS + +RL +A +L +N + +DEP++GL ++ A++N+ G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 862 QPSIDIFEAFDDLILM-----KNGGRIIYSGP 888
+D+ D L+ + + GG I+YSGP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG---YRLDEFVP--QKTSAYISQYDL 57
++G GCGKTTLL L+G SGE+S +G + + +P ++ Y+ Q +
Sbjct: 34 FIIGASGCGKTTLLRCLAG---FEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV 90
Query: 58 HIAEMTVRETIDF-----SARCQGTGHRADSMKEVIKLEKLAGIFP 98
+TV I + R R ++M E+ + +LAG +P
Sbjct: 91 LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP 136
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 14/213 (6%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSG-RKTXXXXXXXXXXXXYPKVQHTFAR 737
+L+DI+ + PG + ++G SG GKTTL+ L+G + + K + R
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 738 IS--GYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL 795
GY Q + P++TV ++ + + + E + E+ EL G +Y
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-RYP- 136
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRAVKNVVETGR 854
LS Q++R +A L +P +I +DEP S LD + I + + G+
Sbjct: 137 ------HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK 190
Query: 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
+ V H + + D + +MK GRI+ +
Sbjct: 191 SAVFVSHDRE-EALQYADRIAVMKQ-GRILQTA 221
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTI 860
V LS + +R+ IA L+ + I +DEP++ LD V RA+++++E +
Sbjct: 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 861 HQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHS 893
+ I D L I++ G G+H
Sbjct: 529 EHDVLMIDYVSDRL--------IVFEGEPGRHG 553
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS + +R+ IA L+ F DEP+S LD R V R ++ + G+ V+ H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH-- 286
Query: 864 SIDIFEAFDDLILMKNGGRIIYSGP 888
+ + + D+I ++Y P
Sbjct: 287 DLAVLDYLSDVI------HVVYGEP 305
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 106 MKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRA 165
+ I L N +LK LG+ D V D +SGG+ +R+ ++
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADI 492
Query: 166 LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225
+DE S LD + ++HL+ + TAL+ ++ D D +++ EG+
Sbjct: 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPG 550
Query: 226 YHG 228
HG
Sbjct: 551 RHG 553
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTI 860
V LS + +R+ IA L+ + I +DEP++ LD V RA+++++E +
Sbjct: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 861 HQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHS 893
+ I D L I++ G G+H
Sbjct: 515 EHDVLMIDYVSDRL--------IVFEGEPGRHG 539
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS + +R+ IA L+ F DEP+S LD R V R ++ + G+ V+ H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH-- 272
Query: 864 SIDIFEAFDDLILMKNGGRIIYSGP 888
+ + + D+I ++Y P
Sbjct: 273 DLAVLDYLSDVI------HVVYGEP 291
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 106 MKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRA 165
+ I L N +LK LG+ D V D +SGG+ +R+ ++
Sbjct: 424 LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADI 478
Query: 166 LFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225
+DE S LD + ++HL+ + TAL+ ++ D D +++ EG+
Sbjct: 479 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV--VEHDVLMIDYVSDRLIVFEGEPG 536
Query: 226 YHG 228
HG
Sbjct: 537 RHG 539
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.034, Method: Composition-based stats.
Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 29/229 (12%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----------KTXXXXXXXXXX 725
+ + L ++ + G +T ++G +G+GK+TL++V++G +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 726 XXYPKVQHTFARISGYCEQNDIHS-------PNITVEESVIFSAWLRLSPEIDLKTKAEF 778
+ + TF E + + P + S+ + W+ + E
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI--------PKEEEM 130
Query: 779 VNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 838
V + + +E +K S + LS Q K + I L+ NP +I MD+P +G+
Sbjct: 131 VEKAFKILEF--LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 839 AAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
A + V + G T + H+ I + D L +M N G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFN-GQIIAEG 235
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 71
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++I ++ +K + ++ + E D I ++G
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKA-CQLEEDISKFAEKDNI---VLGE 125
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G++ LS QR R+++A + + + +D P LD
Sbjct: 126 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 161
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 29/229 (12%)
Query: 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR----------KTXXXXXXXXXX 725
+ + L ++ + G +T ++G +G+GK+TL++V++G +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 726 XXYPKVQHTFARISGYCEQNDIHS-------PNITVEESVIFSAWLRLSPEIDLKTKAEF 778
+ + TF E + + P + S+ + W+ + E
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI--------PKEEEM 130
Query: 779 VNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 838
V + + +E +K S + LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEKAFKILEF--LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 839 AAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887
A + V + G T + H+ I + D L +M N G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFN-GQIIAEG 235
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 695 LMGVSGAGKTTLMDVLSG---RKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPN 751
++G +GAGKT +++++G + +H A + QN P+
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA----FVYQNYSLFPH 86
Query: 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811
+ V++++ F ++ K + VL T I++ L P LS +++R
Sbjct: 87 MNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRNPLT--LSGGEQQR 135
Query: 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862
+ +A LV NP I+ +DEP S LD R E R ++ +H+
Sbjct: 136 VALARALVTNPKILLLDEPLSALDPRTQ-----------ENAREMLSVLHK 175
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 47/227 (20%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTS-AYISQYDLHIAE 61
++LG G GKT L ++G + SG + +G + + P+K A++ Q
Sbjct: 30 VILGPTGAGKTLFLELIAG---FHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86
Query: 62 MTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTD 121
M V++ ++F R MK++ DP ++ L T
Sbjct: 87 MNVKKNLEFGMR----------MKKI----------KDP--------------KRVLDTA 112
Query: 122 YILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTF 181
LKI L + +P+ +SGG+++R+ +V + L +DE + LD T
Sbjct: 113 RDLKIEHL------LDRNPL--TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 182 QIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
L ++H + ++ + E + D + ++ +GK++ G
Sbjct: 165 NAREMLS-VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT-VVCTIH 861
G S ++KR I V P + +DE SGLD A +V V ++ + R+ ++ T +
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 204
Query: 862 QPSIDIFEAFDDLILMKNGGRIIYSG 887
Q +D + D + + GRI+ SG
Sbjct: 205 QRILDYIKP--DYVHVLYQGRIVKSG 228
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 714
+L ++ PG + A+MG +G+GK+TL L+GR+
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 51
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRT-VVCTIH 861
G S ++KR I V P + +DE SGLD A +V V ++ + R+ ++ T +
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223
Query: 862 QPSIDIFEAFDDLILMKNGGRIIYSG 887
Q +D + D + + GRI+ SG
Sbjct: 224 QRILDYIKP--DYVHVLYQGRIVKSG 247
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 714
+L ++ PG + A+MG +G+GK+TL L+GR+
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863
LS Q K + I L+ NP +I MDEP +G+ A + V + G T + H+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 864 SIDIFEAFDDLILMKNGGRIIYSG 887
I + D L +M N G+II G
Sbjct: 214 DI-VLNYIDHLYVMFN-GQIIAEG 235
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 36.6 bits (83), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 17/157 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++I + + ++ + E D I ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 156
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G++ LS QR R+++A + + + +D P LD
Sbjct: 157 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++IF + + ++ + E D I ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI---VLGE 156
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G++ LS Q+ ++++A + + + +D P LD
Sbjct: 157 GGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLD 192
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/194 (19%), Positives = 78/194 (40%), Gaps = 23/194 (11%)
Query: 686 TFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQN 745
T RPG + L+G +G GK+T + +L+G++ P+ Q G QN
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP----PEWQEIIKYFRGSELQN 154
Query: 746 DIHSPNITVEESVIFSAWLRLSP--------------EIDLKTKAEFVNEVLQTIELDGI 791
+++I ++ P ++ ++ E V ++ ++L+ +
Sbjct: 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV 214
Query: 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE 851
+ LS + +R I + V + DEP+S LD + + +++++
Sbjct: 215 LKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA 269
Query: 852 TGRTVVCTIHQPSI 865
+ V+C H S+
Sbjct: 270 PTKYVICVEHDLSV 283
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 37/218 (16%)
Query: 645 LPFEPLTLTFEDVQYYV-----DTPSAMKKRGFNQKKLQ------LLSDITGTFRPGILT 693
+P E L E +Q+ + D + R F+ L+ +L+ G F +
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEIL 381
Query: 694 ALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARISGYCEQNDIHSPNIT 753
+MG +G GKTTL+ +L+G P E DI N++
Sbjct: 382 VMMGENGTGKTTLIKLLAG-------------ALKPD------------EGQDIPKLNVS 416
Query: 754 VEESVIFSAWLRLSPEIDLKT-KAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRL 812
++ I + ++ K + +F+N QT + ++ + V LS + +R+
Sbjct: 417 MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRV 476
Query: 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVV 850
I + L I +DEP++ LD+ I + ++ +
Sbjct: 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 144 GVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLL 203
+SGGQK+R+ + + L DE ++ LD +TT I+ LK + T L+ +
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-IT 198
Query: 204 QPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDCGFRCPERKGVADFLQEVISRKDQ 263
+ D V +++ G+++ S + F P+ F+Q +
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTLHLDIP 250
Query: 264 EQYWHR 269
E Y R
Sbjct: 251 EDYQER 256
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 769 EIDLKTKAEF------VNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP 822
++ ++ AEF V+ L+T+ G+ Y +G P + LS + +R+ +A EL
Sbjct: 824 DMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPT-LSGGEAQRVKLASELQKRS 882
Query: 823 S---IIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 872
+ + +DEPT+GL ++ + +V+ G TV+ H ++D+ + D
Sbjct: 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEH--NLDVIKTSD 933
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 804 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861
LS + +R+ +A ++ + + +DEP+ GL R ++ + + + G T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 862 QPSIDIFEAFDDLILM-----KNGGRIIYSGP 888
D E D ++ + ++GGRI++SGP
Sbjct: 582 DE--DTIEHADWIVDIGPGAGEHGGRIVHSGP 611
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 680 LSDITGTFRPGILTALMGVSGAGKTTLM-DVLS 711
L I +F G+LT++ GVSG+GK+TL+ D+L+
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILA 690
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 19/107 (17%)
Query: 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEV-SYNGYRLDEFVPQKTSAYI-SQYDLHIAE 61
++G G GK+TL++ L+G+L L SGEV ++ R+ ++ Q A+I S D +E
Sbjct: 704 VIGPNGAGKSTLINVLTGEL---LPTSGEVYTHENCRI-AYIKQHAFAHIESHLDKTPSE 759
Query: 62 MTV--------RETIDFSARCQGTGHRADSMKEVIKLE----KLAGI 96
RET+D + R Q + A++M ++ K+E ++AGI
Sbjct: 760 YIQWRFQTGEDRETMDRANR-QINENDAEAMNKIFKIEGTPRRIAGI 805
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 781 EVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840
E+ + + G+ +V + GLS Q+ +L +A P +I +DEPT+ LD +
Sbjct: 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLG 938
Query: 841 IVMRAVK 847
+ +A+K
Sbjct: 939 ALSKALK 945
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G ++ +P +S LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 536 GFTDEMIAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 126 ILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVS 185
+LGLD IV RG+SGGQK +L + +DE +N LD + +
Sbjct: 886 MLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK 942
Query: 186 FLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228
LK +I + A T +L ++V + +G++ G
Sbjct: 943 ALKEF-----EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 139 DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHL 190
D +SGGQK+R+ + + L D+ ++ LD +TT I+ LK +
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 35.0 bits (79), Expect = 0.28, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 143 RGVSGGQKK------RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 196
RG+SGG++ ++ E+ G A F+DE + LD+ +I S LK L +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 197 TALISLLQPAPETFD 211
I+ + E FD
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 144 GVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHL 190
+SGGQK+R+ + + L D+ ++ LD +TT I+ LK +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 143 RGVSGGQKKRLTT------GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDA 196
RG+SGG++ ++ E+ G A F+DE + LD+ +I S LK L +
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 197 TALISLLQPAPETFD 211
I+ + E FD
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L DI G L A+ G +GAGKT+L+ ++ G K++H+ RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE----------LEPSEGKIKHS-GRI 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++I ++ +K + ++ + E D I ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKA-CQLEEDISKFAEKDNI---VLGE 155
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
G++ LS Q+ ++++A + + + +D P LD
Sbjct: 156 GGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLD 191
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 844
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 17/157 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++IF + + ++ + E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDN---TVLGE 156
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
GV+ LS QR R+++A + + + +D P LD
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 17/157 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++IF + + ++ + E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDN---TVLGE 156
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
GV+ LS QR R+++A + + + +D P LD
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
G+ +V + GLS Q+ +L +A P +I +DEPT+ LD + + +A+K
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK 847
G+ +V + GLS Q+ +L +A P +I +DEPT+ LD + + +A+K
Sbjct: 882 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 939
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 33.5 bits (75), Expect = 0.82, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 944 LHQENKELGKQLSSPSPGSKDLHFPTHFPQN 974
LHQ+ E + S P+PGS DL F T P N
Sbjct: 68 LHQQEXEFEPKASRPTPGSADLCFITSTPIN 98
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 55/205 (26%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L +I+ + PG L+G +G+GK+TL+ F R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLS-------------------------AFLRL 70
Query: 739 ---SGYCEQNDIHSPNITVEE-----------SVIFSAWLR--LSPEIDLKTKAEFVNEV 782
G + + + +IT+E+ IFS R L P A E+
Sbjct: 71 LNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDP-----NAAHSDQEI 125
Query: 783 LQTIELDGIKYSLVGLPG------VSG---LSTEQRKRLTIAVELVANPSIIFMDEPTSG 833
+ + G++ + PG V G LS ++ + +A +++ I+ +DEP++
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 834 LDARAAAIVMRAVKNVVETGRTVVC 858
LD I+ R +K ++C
Sbjct: 186 LDPVTYQIIRRTLKQAFADCTVILC 210
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 874
MD+ G+++ A IV+ + + E+G+ + IH+ +I+I +A D+L
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 16/75 (21%)
Query: 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIA 60
+ ++G GCGK++LLSAL L+ KV G V+ G +VPQ+ A+I Q D
Sbjct: 33 LVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVAIKGSV--AYVPQQ--AWI-QND---- 80
Query: 61 EMTVRETIDFSARCQ 75
++RE I F CQ
Sbjct: 81 --SLRENILFG--CQ 91
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV---KNVVET 852
+G GV+ LS Q++R+++A + +N I D+P S +DA + V K +++
Sbjct: 121 IGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN 179
Query: 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883
+T + H S + D+I++ +GG+I
Sbjct: 180 -KTRILVTHSMS---YLPQVDVIIVMSGGKI 206
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L IT T G + G +G GKTTL+ +S Y V T +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS-----TYLKPLKGEIIYNGVPITKVKG 78
Query: 739 SGYCEQNDIHSP-NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG 797
+ +I P I+VE+ + A L +K + + L+++E+ +K L
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKL-- 131
Query: 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857
LS +R+ +A L+ N I +D+P +D + V++++ +++ V+
Sbjct: 132 ----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 858 CT 859
+
Sbjct: 188 IS 189
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 943 TLHQENKELGKQLSSPSPGSKDLHFPTHFPQN 974
LHQ+ E + S P+PGS DL F T P N
Sbjct: 67 NLHQQEMEFEPKASRPTPGSADLCFITSTPIN 98
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ- 862
LS Q + ++ L + P I+ +DEP +DA ++ R +K E G+ + H+
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHEL 185
Query: 863 PSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEV 922
+++++ + L+ G R+ GP+ V + ES ++ N A +L++
Sbjct: 186 DMLNLYKEYKAYFLV--GNRL--QGPI-----SVSELLESS----IVEGERNDALLVLDI 232
Query: 923 SS---SSIETELGVDFGQI 938
S ++ +LG+ FG +
Sbjct: 233 MDKKVSIVKGDLGMKFGAL 251
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 3 LLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNG 37
++LG G GKTTLL A+SG L + SG + NG
Sbjct: 34 IILGPNGSGKTTLLRAISGLLPY----SGNIFING 64
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++I ++ + +K + ++ + E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYKSVVKA-CQLQQDITKFAEQDN---TVLGE 155
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
GV+ LS QR R+++A + + + +D P LD
Sbjct: 156 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 3 LLLGHPGCGKTTLLSALSG 21
LL+G+P CGKTTL +AL+
Sbjct: 5 LLIGNPNCGKTTLFNALTN 23
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 714
N + L++LS IT +P ++ A++G+ GK+ LM+ L+G+K
Sbjct: 35 NPEALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 73
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK 714
N + L++LS IT +P ++ A++G+ GK+ LM+ L+G+K
Sbjct: 24 NPEALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++I + + ++ + E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDN---TVLGE 156
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
GV+ LS QR R+++A + + + +D P LD
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTXXXXXXXXXXXXYPKVQHTFARI 738
+L +I G + A+ G +G+GKT+L+ ++ G ++H+ R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----------IKHS-GRV 101
Query: 739 SGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798
S +C Q P T++E++I + + ++ + E D +++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDN---TVLGE 156
Query: 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835
GV+ LS QR R+++A + + + +D P LD
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,425,179
Number of Sequences: 62578
Number of extensions: 1452744
Number of successful extensions: 3818
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3461
Number of HSP's gapped (non-prelim): 356
length of query: 1252
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1142
effective length of database: 8,089,757
effective search space: 9238502494
effective search space used: 9238502494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)