Query 000853
Match_columns 1252
No_of_seqs 610 out of 4756
Neff 8.6
Searched_HMMs 46136
Date Tue Apr 2 00:25:42 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 1E-193 2E-198 1753.2 89.3 1211 1-1252 143-1387(1391)
2 PLN03140 ABC transporter G fam 100.0 1E-189 2E-194 1854.5 130.3 1252 1-1252 193-1470(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 6E-168 1E-172 1659.4 125.9 1199 1-1249 89-1391(1394)
4 PLN03211 ABC transporter G-25; 100.0 7.9E-96 2E-100 904.6 64.8 584 648-1249 36-659 (659)
5 KOG0061 Transporter, ABC super 100.0 3.4E-96 7E-101 897.6 57.3 580 648-1252 22-612 (613)
6 TIGR00955 3a01204 The Eye Pigm 100.0 1.6E-94 3.4E-99 896.7 61.4 568 675-1252 36-617 (617)
7 TIGR00956 3a01205 Pleiotropic 100.0 1E-91 2.2E-96 931.6 62.6 565 675-1250 72-696 (1394)
8 PLN03140 ABC transporter G fam 100.0 6.6E-91 1.4E-95 917.6 60.0 566 676-1249 177-790 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 4.4E-84 9.5E-89 791.1 40.9 566 676-1251 127-733 (1391)
10 KOG0055 Multidrug/pheromone ex 100.0 1E-75 2.2E-80 720.6 43.8 750 1-891 381-1210(1228)
11 KOG0061 Transporter, ABC super 100.0 2.1E-72 4.6E-77 688.0 51.1 545 1-594 58-608 (613)
12 TIGR00955 3a01204 The Eye Pigm 100.0 1.3E-70 2.9E-75 682.5 55.9 550 1-593 53-612 (617)
13 KOG0054 Multidrug resistance-a 100.0 7.8E-71 1.7E-75 695.2 51.3 718 1-892 549-1360(1381)
14 PLN03211 ABC transporter G-25; 100.0 3.5E-69 7.6E-74 667.3 57.2 546 1-593 96-657 (659)
15 TIGR01257 rim_protein retinal- 100.0 8.9E-69 1.9E-73 705.3 61.5 217 651-890 1937-2155(2272)
16 PLN03130 ABC transporter C fam 100.0 1.4E-67 3.1E-72 707.3 56.2 213 651-892 1237-1459(1622)
17 PLN03232 ABC transporter C fam 100.0 4.9E-67 1.1E-71 703.6 53.0 212 651-891 1234-1455(1495)
18 TIGR00957 MRP_assoc_pro multi 100.0 2.7E-64 5.9E-69 678.0 55.5 213 651-892 1284-1506(1522)
19 PTZ00265 multidrug resistance 100.0 9.6E-64 2.1E-68 664.2 49.9 218 651-891 1165-1449(1466)
20 COG1123 ATPase components of v 100.0 1.8E-63 3.9E-68 575.1 43.5 460 1-890 37-515 (539)
21 PTZ00243 ABC transporter; Prov 100.0 9.6E-63 2.1E-67 660.3 55.7 213 650-891 1307-1530(1560)
22 TIGR01271 CFTR_protein cystic 100.0 9.5E-62 2.1E-66 651.1 60.5 212 651-892 1217-1438(1490)
23 PRK13549 xylose transporter AT 100.0 6.9E-63 1.5E-67 603.7 43.2 446 1-892 33-492 (506)
24 PRK10762 D-ribose transporter 100.0 1.4E-62 3.1E-67 600.1 44.8 436 1-892 32-482 (501)
25 PRK10261 glutathione transport 100.0 1.9E-62 4.2E-67 610.2 45.2 228 651-891 313-550 (623)
26 PRK09700 D-allose transporter 100.0 2E-62 4.3E-67 600.9 42.4 443 1-889 33-493 (510)
27 TIGR03269 met_CoM_red_A2 methy 100.0 4.1E-62 8.9E-67 599.5 42.4 218 651-889 279-512 (520)
28 PRK15439 autoinducer 2 ABC tra 100.0 6E-62 1.3E-66 594.7 42.4 205 679-892 278-490 (510)
29 PRK15134 microcin C ABC transp 100.0 9.6E-62 2.1E-66 596.9 43.8 203 677-890 299-511 (529)
30 TIGR02633 xylG D-xylose ABC tr 100.0 2.6E-61 5.7E-66 590.1 45.4 222 652-891 258-489 (500)
31 PRK11288 araG L-arabinose tran 100.0 1.9E-61 4.2E-66 590.2 42.0 206 678-892 267-483 (501)
32 PRK10982 galactose/methyl gala 100.0 2.8E-60 6E-65 579.2 42.3 437 1-891 26-477 (491)
33 PRK10938 putative molybdenum t 100.0 2.2E-59 4.8E-64 571.7 36.5 215 651-887 260-485 (490)
34 PRK11819 putative ABC transpor 100.0 3.6E-57 7.9E-62 557.7 43.5 202 651-889 324-528 (556)
35 COG4172 ABC-type uncharacteriz 100.0 1.5E-56 3.3E-61 482.7 39.4 229 650-890 275-512 (534)
36 PRK15064 ABC transporter ATP-b 100.0 1.3E-56 2.8E-61 551.6 43.9 198 651-889 319-520 (530)
37 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.6E-56 5.6E-61 550.3 45.3 201 651-888 322-525 (552)
38 PRK13409 putative ATPase RIL; 100.0 2.5E-55 5.4E-60 537.3 39.0 211 651-903 340-554 (590)
39 PRK10636 putative ABC transpor 100.0 1.2E-54 2.7E-59 540.1 42.0 198 651-890 312-513 (638)
40 PRK11147 ABC transporter ATPas 100.0 5.6E-54 1.2E-58 536.2 44.7 202 651-889 319-523 (635)
41 COG0488 Uup ATPase components 100.0 4.4E-53 9.5E-58 501.7 40.7 199 650-888 320-519 (530)
42 COG1129 MglA ABC-type sugar tr 100.0 1.1E-52 2.4E-57 482.8 40.8 438 1-891 36-487 (500)
43 PLN03073 ABC transporter F fam 100.0 3.2E-51 6.8E-56 509.2 43.4 200 651-889 508-709 (718)
44 COG3845 ABC-type uncharacteriz 100.0 2.7E-49 5.8E-54 442.9 39.1 442 1-891 32-489 (501)
45 COG1126 GlnQ ABC-type polar am 100.0 6.7E-48 1.5E-52 387.3 22.2 215 652-890 3-221 (240)
46 COG1135 AbcC ABC-type metal io 100.0 1.8E-45 4E-50 388.8 20.6 220 652-891 2-228 (339)
47 COG1127 Ttg2A ABC-type transpo 100.0 8.7E-45 1.9E-49 370.8 20.7 229 651-903 8-248 (263)
48 COG1125 OpuBA ABC-type proline 100.0 2E-44 4.4E-49 368.6 18.0 216 652-892 2-223 (309)
49 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-43 3E-48 369.3 22.1 204 651-880 3-207 (248)
50 KOG0927 Predicted transporter 100.0 2.7E-43 5.9E-48 394.8 25.2 201 651-889 389-591 (614)
51 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.3E-43 7.2E-48 372.8 24.1 218 651-892 4-225 (254)
52 COG1131 CcmA ABC-type multidru 100.0 2.5E-43 5.5E-48 395.9 24.5 214 652-889 5-221 (293)
53 COG2884 FtsE Predicted ATPase 100.0 2.8E-43 6E-48 345.2 20.6 213 652-888 2-220 (223)
54 COG4555 NatA ABC-type Na+ tran 100.0 4.4E-44 9.6E-49 353.5 15.0 203 677-891 15-219 (245)
55 COG3638 ABC-type phosphate/pho 100.0 2E-43 4.4E-48 359.8 18.9 221 651-892 3-235 (258)
56 COG1120 FepC ABC-type cobalami 100.0 3.9E-43 8.5E-48 374.6 21.2 220 651-892 2-226 (258)
57 COG1136 SalX ABC-type antimicr 100.0 9.7E-43 2.1E-47 364.3 23.7 210 652-882 2-219 (226)
58 COG1117 PstB ABC-type phosphat 100.0 1.2E-42 2.6E-47 347.1 20.9 219 651-890 7-233 (253)
59 TIGR01257 rim_protein retinal- 100.0 4.1E-37 8.8E-42 406.8 74.2 218 650-891 927-1146(2272)
60 COG3839 MalK ABC-type sugar tr 100.0 3.9E-42 8.5E-47 381.3 21.3 217 651-892 3-221 (338)
61 COG1118 CysA ABC-type sulfate/ 100.0 3.1E-42 6.7E-47 363.1 18.2 207 675-891 13-224 (345)
62 COG3842 PotA ABC-type spermidi 100.0 3.6E-42 7.7E-47 383.7 19.8 218 651-892 5-224 (352)
63 PRK13537 nodulation ABC transp 100.0 1.3E-40 2.7E-45 378.3 25.3 215 651-890 7-223 (306)
64 COG1124 DppF ABC-type dipeptid 100.0 1.4E-40 3E-45 342.6 20.6 219 651-891 3-228 (252)
65 TIGR02314 ABC_MetN D-methionin 100.0 2.8E-40 6E-45 377.5 24.8 219 652-891 2-227 (343)
66 COG1122 CbiO ABC-type cobalt t 100.0 2.2E-40 4.7E-45 355.2 19.9 216 651-890 3-224 (235)
67 COG3840 ThiQ ABC-type thiamine 100.0 2.2E-40 4.7E-45 321.6 17.5 197 682-890 17-215 (231)
68 KOG0058 Peptide exporter, ABC 100.0 5E-39 1.1E-43 376.1 31.2 217 650-891 464-688 (716)
69 cd03261 ABC_Org_Solvent_Resist 100.0 8.6E-40 1.9E-44 360.2 23.6 214 653-890 2-222 (235)
70 COG1137 YhbG ABC-type (unclass 100.0 4E-41 8.6E-46 332.2 11.3 210 673-892 13-226 (243)
71 PRK13536 nodulation factor exp 100.0 1.4E-39 3E-44 372.9 25.5 216 650-890 40-257 (340)
72 PRK11650 ugpC glycerol-3-phosp 100.0 1.3E-39 2.7E-44 375.7 25.0 217 651-891 3-221 (356)
73 PRK11432 fbpC ferric transport 100.0 1.7E-39 3.6E-44 373.4 25.2 216 651-891 6-223 (351)
74 TIGR03265 PhnT2 putative 2-ami 100.0 1.6E-39 3.4E-44 374.5 25.0 216 651-891 4-221 (353)
75 TIGR03258 PhnT 2-aminoethylpho 100.0 2.1E-39 4.6E-44 373.6 24.7 217 651-892 5-226 (362)
76 TIGR01188 drrA daunorubicin re 100.0 2E-39 4.3E-44 369.4 21.8 203 676-890 5-209 (302)
77 PRK10851 sulfate/thiosulfate t 100.0 5.3E-39 1.2E-43 370.1 24.8 218 652-891 3-223 (353)
78 COG1126 GlnQ ABC-type polar am 100.0 1E-39 2.2E-44 328.5 15.9 190 1-233 30-223 (240)
79 COG4152 ABC-type uncharacteriz 100.0 1.2E-39 2.5E-44 331.3 16.6 205 674-891 12-216 (300)
80 cd03259 ABC_Carb_Solutes_like 100.0 7.7E-39 1.7E-43 347.3 24.1 199 677-887 13-213 (213)
81 PRK09452 potA putrescine/sperm 100.0 8E-39 1.7E-43 370.0 25.5 216 651-891 14-231 (375)
82 PRK11607 potG putrescine trans 100.0 1.1E-38 2.4E-43 369.7 26.5 216 651-891 19-236 (377)
83 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.2E-38 2.6E-43 347.4 25.3 200 677-889 17-218 (220)
84 TIGR01288 nodI ATP-binding ABC 100.0 8.6E-39 1.9E-43 364.3 25.0 215 651-890 4-220 (303)
85 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-38 2.3E-43 347.9 24.1 213 653-890 2-217 (220)
86 TIGR00960 3a0501s02 Type II (G 100.0 9.3E-39 2E-43 347.4 23.3 209 652-883 2-216 (216)
87 TIGR01186 proV glycine betaine 100.0 6.4E-39 1.4E-43 368.0 23.1 205 675-891 4-216 (363)
88 COG0411 LivG ABC-type branched 100.0 3.4E-39 7.3E-44 332.8 17.4 209 675-892 15-237 (250)
89 PRK11153 metN DL-methionine tr 100.0 1.4E-38 2.9E-43 367.2 24.5 219 652-891 2-227 (343)
90 PRK11000 maltose/maltodextrin 100.0 1.6E-38 3.5E-43 369.3 25.1 216 651-891 3-220 (369)
91 cd03296 ABC_CysA_sulfate_impor 100.0 2.4E-38 5.3E-43 349.4 25.1 218 651-890 2-222 (239)
92 cd03269 ABC_putative_ATPase Th 100.0 1.8E-38 3.9E-43 343.6 23.5 209 653-887 2-210 (210)
93 cd03301 ABC_MalK_N The N-termi 100.0 2.8E-38 6E-43 343.1 24.7 210 653-887 2-213 (213)
94 cd03219 ABC_Mj1267_LivG_branch 100.0 2E-38 4.3E-43 350.0 23.9 205 677-890 13-228 (236)
95 PRK09536 btuD corrinoid ABC tr 100.0 1.4E-38 2.9E-43 369.7 23.1 219 651-891 3-225 (402)
96 TIGR03522 GldA_ABC_ATP gliding 100.0 2.3E-38 4.9E-43 360.1 24.0 213 652-890 3-217 (301)
97 cd03218 ABC_YhbG The ABC trans 100.0 2.9E-38 6.3E-43 347.8 23.7 213 653-890 2-218 (232)
98 cd03266 ABC_NatA_sodium_export 100.0 3.3E-38 7.1E-43 343.9 23.8 215 652-887 2-218 (218)
99 cd03260 ABC_PstB_phosphate_tra 100.0 2.8E-38 6.1E-43 346.4 23.3 214 653-890 2-225 (227)
100 COG2274 SunT ABC-type bacterio 100.0 8.7E-38 1.9E-42 383.2 29.8 216 649-892 469-694 (709)
101 COG0410 LivF ABC-type branched 100.0 1.8E-38 4E-43 324.8 19.8 216 652-893 4-225 (237)
102 cd03268 ABC_BcrA_bacitracin_re 100.0 3.7E-38 8.1E-43 340.6 22.5 206 653-887 2-208 (208)
103 PRK13637 cbiO cobalt transport 100.0 5E-38 1.1E-42 354.8 24.5 219 652-890 3-230 (287)
104 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.6E-38 5.7E-43 354.3 21.9 205 674-890 34-246 (269)
105 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.1E-38 8.9E-43 343.1 22.7 208 653-882 2-217 (218)
106 cd03263 ABC_subfamily_A The AB 100.0 4.5E-38 9.8E-43 343.3 23.0 214 653-890 2-217 (220)
107 cd03256 ABC_PhnC_transporter A 100.0 3.8E-38 8.3E-43 349.1 22.4 206 677-891 14-231 (241)
108 PRK11629 lolD lipoprotein tran 100.0 1.7E-37 3.7E-42 341.3 27.3 217 651-889 5-229 (233)
109 cd03234 ABCG_White The White s 100.0 1.3E-37 2.9E-42 340.4 26.2 221 652-887 4-226 (226)
110 cd03258 ABC_MetN_methionine_tr 100.0 5E-38 1.1E-42 346.0 22.8 217 652-889 2-225 (233)
111 PRK09493 glnQ glutamine ABC tr 100.0 7.5E-38 1.6E-42 346.0 24.3 215 652-890 2-221 (240)
112 cd03226 ABC_cobalt_CbiO_domain 100.0 3.5E-38 7.6E-43 339.8 20.8 192 677-884 13-205 (205)
113 PRK13651 cobalt transporter AT 100.0 7.4E-38 1.6E-42 354.6 24.0 220 652-891 3-251 (305)
114 PRK15079 oligopeptide ABC tran 100.0 1.2E-37 2.6E-42 356.1 25.8 232 650-891 7-248 (331)
115 PRK11248 tauB taurine transpor 100.0 1.6E-37 3.6E-42 344.7 26.1 212 652-889 2-215 (255)
116 PRK11264 putative amino-acid A 100.0 1.1E-37 2.3E-42 347.2 24.1 214 652-889 4-228 (250)
117 PRK13634 cbiO cobalt transport 100.0 8.8E-38 1.9E-42 353.4 23.6 219 652-890 3-231 (290)
118 cd03224 ABC_TM1139_LivF_branch 100.0 5.7E-38 1.2E-42 343.1 21.4 199 677-889 13-216 (222)
119 TIGR02315 ABC_phnC phosphonate 100.0 6.3E-38 1.4E-42 347.7 21.9 219 652-891 2-232 (243)
120 KOG0055 Multidrug/pheromone ex 100.0 2.5E-36 5.5E-41 373.1 38.1 225 645-892 344-574 (1228)
121 PRK13643 cbiO cobalt transport 100.0 1.2E-37 2.5E-42 352.0 24.2 220 652-891 2-230 (288)
122 cd03295 ABC_OpuCA_Osmoprotecti 100.0 9.9E-38 2.2E-42 345.2 23.2 202 677-890 14-221 (242)
123 PRK13631 cbiO cobalt transport 100.0 1.2E-37 2.6E-42 354.9 24.5 220 651-890 21-261 (320)
124 COG4525 TauB ABC-type taurine 100.0 6.9E-38 1.5E-42 307.1 19.2 200 677-889 18-219 (259)
125 TIGR02673 FtsE cell division A 100.0 1.5E-37 3.3E-42 337.5 23.8 206 652-881 2-213 (214)
126 PRK11831 putative ABC transpor 100.0 1.6E-37 3.4E-42 348.3 24.5 217 651-891 7-230 (269)
127 PRK13647 cbiO cobalt transport 100.0 1.7E-37 3.7E-42 348.4 24.6 216 651-890 4-223 (274)
128 KOG0062 ATPase component of AB 100.0 1.9E-37 4.1E-42 346.1 24.3 203 650-889 361-564 (582)
129 cd03292 ABC_FtsE_transporter F 100.0 1.6E-37 3.5E-42 337.5 23.4 206 653-882 2-213 (214)
130 COG1125 OpuBA ABC-type proline 100.0 3.8E-38 8.2E-43 322.6 16.7 192 1-235 29-225 (309)
131 PRK11247 ssuB aliphatic sulfon 100.0 2.6E-37 5.5E-42 342.2 24.4 206 651-889 12-218 (257)
132 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.5E-37 7.5E-42 339.6 25.3 212 652-889 2-216 (236)
133 PRK13646 cbiO cobalt transport 100.0 1.9E-37 4E-42 350.3 23.7 220 651-890 2-231 (286)
134 PRK13650 cbiO cobalt transport 100.0 1.4E-37 3.1E-42 349.9 22.5 217 651-890 4-225 (279)
135 cd03264 ABC_drug_resistance_li 100.0 1.9E-37 4.1E-42 335.8 22.4 208 653-887 2-211 (211)
136 PRK10895 lipopolysaccharide AB 100.0 2.1E-37 4.5E-42 342.7 23.1 215 652-890 4-222 (241)
137 COG0444 DppD ABC-type dipeptid 100.0 2.5E-37 5.4E-42 333.8 22.9 226 652-891 2-240 (316)
138 TIGR00972 3a0107s01c2 phosphat 100.0 3.2E-37 7E-42 342.2 24.6 215 652-890 2-228 (247)
139 PRK10908 cell division protein 100.0 3.9E-37 8.6E-42 336.0 24.8 209 652-884 2-216 (222)
140 PRK13636 cbiO cobalt transport 100.0 2.8E-37 6E-42 348.4 24.2 217 651-891 5-228 (283)
141 PRK10070 glycine betaine trans 100.0 1.9E-37 4.2E-42 359.8 23.5 204 676-891 40-251 (400)
142 cd03262 ABC_HisP_GlnQ_permease 100.0 2.2E-37 4.9E-42 336.1 22.2 206 653-882 2-212 (213)
143 COG4559 ABC-type hemin transpo 100.0 1.5E-37 3.3E-42 309.7 19.0 218 652-892 2-228 (259)
144 PRK10619 histidine/lysine/argi 100.0 3.9E-37 8.4E-42 343.5 24.5 215 651-890 5-237 (257)
145 cd03257 ABC_NikE_OppD_transpor 100.0 3.9E-37 8.4E-42 338.2 24.2 217 652-887 2-228 (228)
146 PRK13641 cbiO cobalt transport 100.0 3.3E-37 7.1E-42 348.5 24.1 220 651-890 2-230 (287)
147 TIGR02211 LolD_lipo_ex lipopro 100.0 6.2E-37 1.4E-41 334.5 24.8 211 652-884 2-220 (221)
148 COG4175 ProV ABC-type proline/ 100.0 6.1E-38 1.3E-42 330.2 16.0 203 678-892 42-252 (386)
149 COG4181 Predicted ABC-type tra 100.0 1.2E-37 2.5E-42 299.1 16.4 198 675-885 21-226 (228)
150 PRK11124 artP arginine transpo 100.0 4.9E-37 1.1E-41 339.9 24.1 214 652-890 3-226 (242)
151 PRK11614 livF leucine/isoleuci 100.0 3.8E-37 8.3E-42 339.6 23.0 214 651-891 5-223 (237)
152 TIGR03740 galliderm_ABC gallid 100.0 9E-37 2E-41 333.4 25.1 198 677-891 13-210 (223)
153 cd03225 ABC_cobalt_CbiO_domain 100.0 3.1E-37 6.8E-42 334.3 21.2 193 677-881 14-210 (211)
154 COG4988 CydD ABC-type transpor 100.0 1.9E-37 4.1E-42 356.9 20.5 216 648-892 317-541 (559)
155 PRK13652 cbiO cobalt transport 100.0 6.3E-37 1.4E-41 344.7 24.4 216 652-891 4-224 (277)
156 COG1135 AbcC ABC-type metal io 100.0 9.3E-38 2E-42 330.5 16.4 190 1-233 34-229 (339)
157 PRK14268 phosphate ABC transpo 100.0 7.3E-37 1.6E-41 341.3 24.6 219 651-890 12-238 (258)
158 PRK13644 cbiO cobalt transport 100.0 6.2E-37 1.3E-41 343.9 24.0 214 652-890 2-220 (274)
159 TIGR03005 ectoine_ehuA ectoine 100.0 6.4E-37 1.4E-41 341.0 23.9 214 653-890 2-232 (252)
160 PRK14247 phosphate ABC transpo 100.0 7.7E-37 1.7E-41 340.1 24.6 221 652-890 4-230 (250)
161 PRK13548 hmuV hemin importer A 100.0 6.2E-37 1.3E-41 341.3 23.6 215 652-891 3-227 (258)
162 PRK14273 phosphate ABC transpo 100.0 8.6E-37 1.9E-41 340.3 24.8 216 651-890 7-234 (254)
163 PRK13638 cbiO cobalt transport 100.0 6.5E-37 1.4E-41 344.0 23.9 214 652-890 2-221 (271)
164 KOG0066 eIF2-interacting prote 100.0 1.5E-36 3.3E-41 328.3 25.4 203 650-892 585-789 (807)
165 COG3839 MalK ABC-type sugar tr 100.0 1E-37 2.2E-42 346.1 16.6 190 2-234 32-222 (338)
166 cd03235 ABC_Metallic_Cations A 100.0 2.7E-37 5.9E-42 335.2 19.6 199 677-887 12-213 (213)
167 PRK13635 cbiO cobalt transport 100.0 1.2E-36 2.6E-41 342.2 25.5 217 651-891 5-226 (279)
168 PRK11022 dppD dipeptide transp 100.0 1.1E-36 2.4E-41 348.4 25.6 225 652-891 4-240 (326)
169 PRK14267 phosphate ABC transpo 100.0 9.9E-37 2.1E-41 339.9 24.3 222 651-890 4-233 (253)
170 PRK11300 livG leucine/isoleuci 100.0 8.9E-37 1.9E-41 340.9 23.8 219 651-891 5-240 (255)
171 TIGR03411 urea_trans_UrtD urea 100.0 9.8E-37 2.1E-41 337.7 23.8 216 652-890 3-227 (242)
172 TIGR03415 ABC_choXWV_ATP choli 100.0 5.2E-37 1.1E-41 353.5 22.2 206 675-892 35-252 (382)
173 cd03298 ABC_ThiQ_thiamine_tran 100.0 9.8E-37 2.1E-41 330.3 23.1 194 682-887 16-211 (211)
174 PRK11308 dppF dipeptide transp 100.0 1.3E-36 2.9E-41 347.4 25.3 227 651-891 5-241 (327)
175 PRK14241 phosphate transporter 100.0 1.3E-36 2.8E-41 339.5 24.7 222 651-890 4-238 (258)
176 PRK09473 oppD oligopeptide tra 100.0 1.5E-36 3.2E-41 347.5 25.6 226 651-891 12-248 (330)
177 TIGR03410 urea_trans_UrtE urea 100.0 9.5E-37 2.1E-41 335.1 23.1 212 653-892 2-219 (230)
178 TIGR02769 nickel_nikE nickel i 100.0 1.1E-36 2.4E-41 341.0 23.9 225 652-891 3-237 (265)
179 KOG0057 Mitochondrial Fe/S clu 100.0 2.8E-37 6.1E-42 348.5 19.1 213 650-892 350-572 (591)
180 PRK13632 cbiO cobalt transport 100.0 1.3E-36 2.8E-41 341.4 24.1 217 650-890 6-227 (271)
181 PRK10575 iron-hydroxamate tran 100.0 8.6E-37 1.9E-41 341.8 22.7 219 651-891 11-234 (265)
182 TIGR01978 sufC FeS assembly AT 100.0 1.8E-36 3.8E-41 336.2 24.8 217 653-889 2-229 (243)
183 PRK14242 phosphate transporter 100.0 2.1E-36 4.5E-41 337.3 25.4 221 650-890 5-233 (253)
184 PRK11231 fecE iron-dicitrate t 100.0 9.5E-37 2.1E-41 340.0 22.5 218 652-891 3-224 (255)
185 PRK10253 iron-enterobactin tra 100.0 1.1E-36 2.5E-41 340.8 22.8 220 650-891 6-230 (265)
186 PRK13649 cbiO cobalt transport 100.0 1.6E-36 3.5E-41 342.8 24.1 219 652-890 3-230 (280)
187 PRK10744 pstB phosphate transp 100.0 1.8E-36 3.9E-41 338.5 24.2 223 648-890 10-240 (260)
188 PRK10584 putative ABC transpor 100.0 3.9E-36 8.4E-41 329.8 26.3 213 651-885 6-226 (228)
189 PRK13639 cbiO cobalt transport 100.0 1.6E-36 3.5E-41 341.0 23.8 215 652-890 2-222 (275)
190 PRK14237 phosphate transporter 100.0 3.1E-36 6.7E-41 337.5 25.8 224 647-890 16-247 (267)
191 COG3840 ThiQ ABC-type thiamine 100.0 2.7E-37 5.8E-42 300.1 14.8 191 1-234 27-218 (231)
192 TIGR01277 thiQ thiamine ABC tr 100.0 2.6E-36 5.6E-41 327.1 24.3 198 679-888 13-212 (213)
193 PRK09984 phosphonate/organopho 100.0 2.1E-36 4.6E-41 338.6 24.4 221 651-891 4-239 (262)
194 PRK13648 cbiO cobalt transport 100.0 2.6E-36 5.7E-41 338.7 25.1 217 651-891 7-228 (269)
195 TIGR03873 F420-0_ABC_ATP propo 100.0 1.2E-36 2.7E-41 339.3 22.2 218 652-891 2-223 (256)
196 PRK14245 phosphate ABC transpo 100.0 2.7E-36 5.9E-41 335.5 24.7 220 651-890 3-230 (250)
197 PRK13640 cbiO cobalt transport 100.0 2.2E-36 4.7E-41 340.9 24.1 219 650-890 4-228 (282)
198 COG1118 CysA ABC-type sulfate/ 100.0 3.2E-37 7E-42 325.3 16.1 193 1-234 30-226 (345)
199 cd03233 ABC_PDR_domain1 The pl 100.0 3.1E-36 6.6E-41 322.8 24.0 196 651-887 3-202 (202)
200 PRK15093 antimicrobial peptide 100.0 2.7E-36 5.8E-41 346.6 25.2 228 651-891 3-245 (330)
201 TIGR01184 ntrCD nitrate transp 100.0 1.8E-36 3.8E-41 331.8 22.6 198 680-889 1-199 (230)
202 PRK14256 phosphate ABC transpo 100.0 4.5E-36 9.8E-41 334.1 26.0 221 651-890 4-232 (252)
203 PRK13633 cobalt transporter AT 100.0 1.9E-36 4.1E-41 341.4 23.2 221 651-891 4-230 (280)
204 cd03232 ABC_PDR_domain2 The pl 100.0 3.3E-36 7.1E-41 320.1 23.5 190 651-887 3-192 (192)
205 COG1131 CcmA ABC-type multidru 100.0 5.1E-37 1.1E-41 344.8 18.2 194 1-237 33-228 (293)
206 COG4987 CydC ABC-type transpor 100.0 5.3E-37 1.1E-41 346.2 18.1 214 651-892 336-559 (573)
207 cd03300 ABC_PotA_N PotA is an 100.0 4.5E-36 9.7E-41 329.6 25.1 212 653-889 2-215 (232)
208 PRK14235 phosphate transporter 100.0 3.8E-36 8.3E-41 336.7 25.0 220 651-889 19-246 (267)
209 TIGR00968 3a0106s01 sulfate AB 100.0 3.3E-36 7.1E-41 331.6 23.9 213 653-890 2-216 (237)
210 PRK13549 xylose transporter AT 100.0 2.7E-36 5.8E-41 369.4 25.7 222 651-892 5-230 (506)
211 PRK14259 phosphate ABC transpo 100.0 2.8E-36 6.1E-41 337.9 23.6 220 650-890 12-249 (269)
212 COG1245 Predicted ATPase, RNas 100.0 1.4E-35 3E-40 325.2 28.3 193 684-904 361-557 (591)
213 PRK14269 phosphate ABC transpo 100.0 2.9E-36 6.3E-41 334.2 23.4 220 652-890 3-226 (246)
214 PRK14250 phosphate ABC transpo 100.0 2.1E-36 4.6E-41 333.9 22.2 210 651-890 3-217 (241)
215 cd03267 ABC_NatA_like Similar 100.0 3.2E-36 6.9E-41 331.2 23.3 201 675-887 32-236 (236)
216 COG1120 FepC ABC-type cobalami 100.0 3E-37 6.4E-42 329.6 14.0 195 1-234 30-227 (258)
217 PRK13645 cbiO cobalt transport 100.0 4.7E-36 1E-40 340.0 24.5 220 651-890 6-236 (289)
218 PRK13547 hmuV hemin importer A 100.0 3E-36 6.4E-41 336.6 22.3 220 652-891 2-241 (272)
219 COG1116 TauB ABC-type nitrate/ 100.0 7E-37 1.5E-41 319.2 15.6 177 1-222 31-207 (248)
220 PRK11144 modC molybdate transp 100.0 3.8E-36 8.3E-41 348.1 23.5 192 682-891 16-215 (352)
221 COG3842 PotA ABC-type spermidi 100.0 4.2E-37 9.2E-42 343.0 14.8 205 1-255 33-238 (352)
222 PRK15112 antimicrobial peptide 100.0 4.9E-36 1.1E-40 335.9 23.4 225 651-890 4-235 (267)
223 cd03213 ABCG_EPDR ABCG transpo 100.0 8.5E-36 1.8E-40 317.2 24.0 190 651-887 3-194 (194)
224 cd03299 ABC_ModC_like Archeal 100.0 8.9E-36 1.9E-40 327.7 24.8 200 679-890 14-215 (235)
225 PRK14257 phosphate ABC transpo 100.0 9.1E-36 2E-40 340.4 25.7 223 651-891 80-310 (329)
226 PRK00349 uvrA excinuclease ABC 100.0 3.8E-35 8.2E-40 369.2 33.4 124 751-890 791-923 (943)
227 PRK14274 phosphate ABC transpo 100.0 7.8E-36 1.7E-40 333.4 24.3 220 651-890 12-239 (259)
228 TIGR02142 modC_ABC molybdenum 100.0 3.4E-36 7.4E-41 349.2 22.1 195 682-890 15-217 (354)
229 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.4E-35 3.1E-40 376.7 29.9 210 651-891 451-670 (686)
230 PRK14270 phosphate ABC transpo 100.0 8.8E-36 1.9E-40 331.6 24.5 220 651-890 4-231 (251)
231 PRK13642 cbiO cobalt transport 100.0 7.5E-36 1.6E-40 336.0 24.1 217 651-890 4-225 (277)
232 cd03297 ABC_ModC_molybdenum_tr 100.0 5.5E-36 1.2E-40 325.0 22.1 191 682-887 16-214 (214)
233 PRK14260 phosphate ABC transpo 100.0 9.8E-36 2.1E-40 332.4 24.5 221 651-890 7-239 (259)
234 PRK10771 thiQ thiamine transpo 100.0 9.1E-36 2E-40 327.4 23.8 212 652-890 2-215 (232)
235 COG4598 HisP ABC-type histidin 100.0 1.1E-36 2.4E-41 294.1 14.4 207 674-891 16-238 (256)
236 PRK14239 phosphate transporter 100.0 9.8E-36 2.1E-40 331.9 24.3 220 651-890 5-232 (252)
237 PRK14271 phosphate ABC transpo 100.0 2.2E-35 4.8E-40 331.3 27.2 220 651-890 21-247 (276)
238 TIGR03608 L_ocin_972_ABC putat 100.0 5.4E-36 1.2E-40 323.5 21.3 189 677-877 11-206 (206)
239 PRK14254 phosphate ABC transpo 100.0 2E-35 4.4E-40 332.9 26.7 220 650-890 38-265 (285)
240 TIGR02770 nickel_nikD nickel i 100.0 5.7E-36 1.2E-40 328.3 21.6 202 679-890 1-211 (230)
241 PRK14244 phosphate ABC transpo 100.0 1.4E-35 3E-40 330.0 24.6 220 651-889 5-232 (251)
242 PRK14262 phosphate ABC transpo 100.0 1.4E-35 3.1E-40 329.9 24.3 219 652-890 4-230 (250)
243 PRK14240 phosphate transporter 100.0 2.3E-35 5E-40 328.2 25.8 219 651-889 3-229 (250)
244 PRK14236 phosphate transporter 100.0 2.2E-35 4.8E-40 331.5 25.9 220 651-890 25-252 (272)
245 PRK10762 D-ribose transporter 100.0 1.1E-35 2.3E-40 363.6 25.2 220 651-892 4-228 (501)
246 COG4555 NatA ABC-type Na+ tran 100.0 1.5E-36 3.2E-41 300.3 14.0 191 1-235 30-222 (245)
247 PRK14272 phosphate ABC transpo 100.0 2E-35 4.4E-40 329.3 25.0 221 651-890 4-232 (252)
248 PRK11701 phnK phosphonate C-P 100.0 1.5E-35 3.2E-40 330.9 24.0 216 651-890 6-237 (258)
249 PRK11174 cysteine/glutathione 100.0 3.2E-36 6.9E-41 377.0 20.6 211 651-891 349-569 (588)
250 PRK14275 phosphate ABC transpo 100.0 3.2E-35 6.9E-40 331.8 26.3 217 650-890 38-266 (286)
251 PRK14263 phosphate ABC transpo 100.0 2.5E-35 5.4E-40 328.4 25.0 220 650-890 7-241 (261)
252 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.5E-35 3.2E-40 323.0 22.6 194 673-887 31-224 (224)
253 PRK14253 phosphate ABC transpo 100.0 2.4E-35 5.2E-40 327.9 24.8 219 651-889 3-228 (249)
254 COG1123 ATPase components of v 100.0 1.4E-35 3E-40 343.7 23.6 225 651-891 5-241 (539)
255 PRK10418 nikD nickel transport 100.0 2.3E-35 4.9E-40 328.4 24.5 214 651-890 4-226 (254)
256 PRK09700 D-allose transporter 100.0 1.3E-35 2.8E-40 364.1 24.5 220 651-892 5-232 (510)
257 PRK13543 cytochrome c biogenes 100.0 2.4E-35 5.1E-40 319.4 23.6 201 651-878 11-211 (214)
258 PRK14258 phosphate ABC transpo 100.0 2.8E-35 6.1E-40 328.8 24.9 222 651-890 7-241 (261)
259 TIGR02982 heterocyst_DevA ABC 100.0 3.3E-35 7.1E-40 320.2 24.7 211 652-883 2-219 (220)
260 PRK13538 cytochrome c biogenes 100.0 1.7E-35 3.7E-40 318.2 21.8 198 652-877 2-201 (204)
261 PRK00635 excinuclease ABC subu 100.0 1.7E-34 3.7E-39 376.0 35.2 137 748-892 759-904 (1809)
262 PRK14248 phosphate ABC transpo 100.0 4.5E-35 9.7E-40 328.8 26.0 220 651-890 21-248 (268)
263 PRK14249 phosphate ABC transpo 100.0 3.3E-35 7.1E-40 327.0 24.6 220 651-890 4-231 (251)
264 PRK14261 phosphate ABC transpo 100.0 2.8E-35 6.2E-40 327.9 24.0 220 651-890 6-233 (253)
265 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.2E-35 2.7E-40 330.6 20.8 222 651-902 2-232 (275)
266 PRK15056 manganese/iron transp 100.0 2.3E-35 5E-40 331.4 23.3 219 651-891 6-227 (272)
267 COG1127 Ttg2A ABC-type transpo 100.0 4.1E-36 8.9E-41 307.3 15.3 193 1-235 36-235 (263)
268 PRK14265 phosphate ABC transpo 100.0 3.4E-35 7.4E-40 329.8 24.1 221 649-890 18-254 (274)
269 COG1117 PstB ABC-type phosphat 100.0 6E-36 1.3E-40 299.2 15.6 206 1-254 35-248 (253)
270 PRK14251 phosphate ABC transpo 100.0 5.2E-35 1.1E-39 325.6 25.1 220 651-890 4-231 (251)
271 PRK10419 nikE nickel transport 100.0 4.1E-35 8.8E-40 328.3 24.4 225 652-891 4-238 (268)
272 TIGR01166 cbiO cobalt transpor 100.0 2.1E-35 4.4E-40 314.2 20.8 179 676-864 4-188 (190)
273 cd03231 ABC_CcmA_heme_exporter 100.0 2.3E-35 5.1E-40 316.2 21.4 184 677-877 13-198 (201)
274 PRK10247 putative ABC transpor 100.0 2.6E-35 5.7E-40 321.7 21.9 210 651-888 7-221 (225)
275 TIGR01193 bacteriocin_ABC ABC- 100.0 5.1E-34 1.1E-38 363.8 37.2 211 651-890 473-693 (708)
276 PRK14238 phosphate transporter 100.0 4.3E-35 9.3E-40 328.7 24.0 220 651-890 24-251 (271)
277 PRK14255 phosphate ABC transpo 100.0 7.4E-35 1.6E-39 324.6 25.7 219 651-889 5-231 (252)
278 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-35 6.3E-40 359.8 24.5 213 651-892 11-227 (510)
279 TIGR02633 xylG D-xylose ABC tr 100.0 4.5E-35 9.8E-40 358.7 26.1 221 652-892 2-228 (500)
280 COG3638 ABC-type phosphate/pho 100.0 9.8E-36 2.1E-40 303.7 16.5 200 1-235 32-237 (258)
281 PRK11176 lipid transporter ATP 100.0 1.3E-35 2.9E-40 371.2 21.3 214 651-891 341-564 (582)
282 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.5E-35 3.2E-40 314.6 18.2 193 1-234 32-226 (254)
283 PRK13546 teichoic acids export 100.0 8.4E-35 1.8E-39 323.1 25.2 231 650-902 3-240 (264)
284 cd03252 ABCC_Hemolysin The ABC 100.0 9.5E-36 2.1E-40 328.7 17.5 210 653-890 2-221 (237)
285 COG1132 MdlB ABC-type multidru 100.0 7.7E-36 1.7E-40 371.2 18.6 214 650-892 327-550 (567)
286 PRK14243 phosphate transporter 100.0 4.6E-35 1E-39 327.4 23.0 219 651-890 10-244 (264)
287 CHL00131 ycf16 sulfate ABC tra 100.0 1.5E-34 3.2E-39 322.4 26.7 220 651-890 7-237 (252)
288 COG4604 CeuD ABC-type enteroch 100.0 2E-36 4.3E-41 297.7 9.9 209 674-892 11-223 (252)
289 TIGR00630 uvra excinuclease AB 100.0 6E-34 1.3E-38 357.7 34.7 124 751-890 789-921 (924)
290 PRK10790 putative multidrug tr 100.0 2.5E-35 5.5E-40 368.8 22.1 211 651-891 340-560 (592)
291 COG1136 SalX ABC-type antimicr 100.0 2.1E-35 4.5E-40 309.2 17.6 180 1-224 33-220 (226)
292 TIGR02323 CP_lyasePhnK phospho 100.0 8E-35 1.7E-39 324.5 23.6 215 651-889 3-233 (253)
293 COG4161 ArtP ABC-type arginine 100.0 2.3E-35 4.9E-40 279.8 16.0 205 675-890 13-226 (242)
294 PRK11288 araG L-arabinose tran 100.0 7E-35 1.5E-39 356.4 24.9 217 651-889 4-224 (501)
295 PRK03695 vitamin B12-transport 100.0 5.7E-35 1.2E-39 323.5 21.6 199 679-891 11-219 (248)
296 PRK14266 phosphate ABC transpo 100.0 9E-35 1.9E-39 323.5 23.3 220 651-890 3-230 (250)
297 PRK11160 cysteine/glutathione 100.0 2.2E-35 4.7E-40 366.1 20.2 214 650-891 337-559 (574)
298 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.7E-35 3.8E-40 377.8 19.6 211 651-891 477-697 (710)
299 cd03230 ABC_DR_subfamily_A Thi 100.0 6.1E-35 1.3E-39 305.1 20.1 169 653-882 2-172 (173)
300 PRK13539 cytochrome c biogenes 100.0 9.9E-35 2.1E-39 312.8 22.2 196 652-877 3-198 (207)
301 cd03251 ABCC_MsbA MsbA is an e 100.0 1.9E-35 4E-40 325.9 16.6 209 653-889 2-220 (234)
302 PRK10982 galactose/methyl gala 100.0 6.2E-35 1.3E-39 356.4 22.9 207 677-892 11-221 (491)
303 PRK13545 tagH teichoic acids e 100.0 1.5E-34 3.2E-39 336.7 24.7 204 677-902 37-240 (549)
304 TIGR00958 3a01208 Conjugate Tr 100.0 3.3E-35 7.2E-40 372.6 21.0 212 651-891 478-699 (711)
305 PRK14246 phosphate ABC transpo 100.0 1.4E-34 3E-39 321.7 23.3 219 651-890 10-237 (257)
306 PRK14264 phosphate ABC transpo 100.0 2.3E-34 5.1E-39 327.5 25.8 223 651-890 45-285 (305)
307 cd03245 ABCC_bacteriocin_expor 100.0 7E-35 1.5E-39 318.1 20.5 209 652-887 3-220 (220)
308 TIGR01189 ccmA heme ABC export 100.0 1.2E-34 2.6E-39 310.3 21.3 174 677-864 13-188 (198)
309 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.9E-35 8.4E-40 324.1 17.8 210 653-889 2-221 (238)
310 COG4619 ABC-type uncharacteriz 100.0 6.1E-36 1.3E-40 286.4 9.6 199 671-883 10-212 (223)
311 TIGR03375 type_I_sec_LssB type 100.0 5.6E-35 1.2E-39 371.8 21.5 212 651-890 463-684 (694)
312 COG1129 MglA ABC-type sugar tr 100.0 1.7E-34 3.6E-39 332.8 23.3 220 651-892 8-233 (500)
313 TIGR01846 type_I_sec_HlyB type 100.0 9E-34 1.9E-38 360.3 32.3 214 650-891 454-677 (694)
314 KOG0056 Heavy metal exporter H 100.0 5.6E-36 1.2E-40 328.6 10.2 219 647-890 533-757 (790)
315 PRK09580 sufC cysteine desulfu 100.0 3.4E-34 7.4E-39 318.8 24.4 220 652-890 2-231 (248)
316 PRK14252 phosphate ABC transpo 100.0 4.7E-34 1E-38 320.0 25.5 221 650-890 15-245 (265)
317 KOG0058 Peptide exporter, ABC 100.0 3E-35 6.5E-40 344.5 15.5 193 1-235 496-691 (716)
318 PRK13540 cytochrome c biogenes 100.0 2.2E-34 4.7E-39 308.6 20.9 194 652-875 2-197 (200)
319 cd03229 ABC_Class3 This class 100.0 1.4E-34 3.1E-39 303.7 18.9 158 677-879 13-176 (178)
320 cd03254 ABCC_Glucan_exporter_l 100.0 1.1E-34 2.4E-39 318.6 18.9 211 651-889 2-221 (229)
321 PRK09544 znuC high-affinity zi 100.0 2.2E-34 4.7E-39 318.3 21.2 199 651-890 4-205 (251)
322 PRK10261 glutathione transport 100.0 2.2E-34 4.7E-39 358.9 23.4 221 651-891 12-255 (623)
323 TIGR02324 CP_lyasePhnL phospho 100.0 3.8E-34 8.1E-39 313.1 22.4 209 652-877 2-222 (224)
324 COG4618 ArpD ABC-type protease 100.0 9.6E-35 2.1E-39 324.4 17.7 221 645-890 328-556 (580)
325 cd03215 ABC_Carb_Monos_II This 100.0 2.9E-34 6.2E-39 302.6 20.4 160 679-882 15-181 (182)
326 TIGR03269 met_CoM_red_A2 methy 100.0 3.2E-34 6.9E-39 352.6 23.9 215 653-890 2-254 (520)
327 cd03244 ABCC_MRP_domain2 Domai 100.0 2.2E-34 4.9E-39 314.4 20.0 208 652-888 3-220 (221)
328 cd03253 ABCC_ATM1_transporter 100.0 9.4E-35 2E-39 320.8 16.8 209 653-890 2-220 (236)
329 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-34 2.9E-39 317.1 17.2 207 651-882 11-225 (226)
330 PRK15134 microcin C ABC transp 100.0 5.7E-34 1.2E-38 350.8 24.8 223 651-891 5-243 (529)
331 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-34 3.2E-39 333.6 18.1 191 1-234 32-223 (356)
332 COG4148 ModC ABC-type molybdat 100.0 5.1E-35 1.1E-39 302.8 12.5 192 682-891 16-215 (352)
333 TIGR03771 anch_rpt_ABC anchore 100.0 3.7E-34 7.9E-39 312.0 19.9 196 685-892 1-199 (223)
334 TIGR01842 type_I_sec_PrtD type 100.0 1.9E-34 4.1E-39 356.6 19.9 213 651-890 316-538 (544)
335 PRK13657 cyclic beta-1,2-gluca 100.0 2.3E-34 4.9E-39 359.6 20.7 211 651-890 334-554 (588)
336 cd03247 ABCC_cytochrome_bd The 100.0 3.7E-34 8.1E-39 300.8 18.9 175 653-887 2-178 (178)
337 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.8E-34 1.7E-38 303.9 21.7 183 653-889 2-189 (200)
338 cd03246 ABCC_Protease_Secretio 100.0 4.2E-34 9E-39 298.7 18.9 168 653-882 2-172 (173)
339 PRK11432 fbpC ferric transport 100.0 2E-34 4.4E-39 331.3 18.1 191 1-234 34-225 (351)
340 TIGR03265 PhnT2 putative 2-ami 100.0 2.1E-34 4.5E-39 332.0 18.0 191 1-234 32-223 (353)
341 COG2274 SunT ABC-type bacterio 100.0 1.2E-34 2.5E-39 355.7 16.2 192 2-235 502-696 (709)
342 TIGR02868 CydC thiol reductant 100.0 3.5E-34 7.5E-39 354.0 19.8 188 650-863 333-529 (529)
343 TIGR01186 proV glycine betaine 100.0 4E-34 8.7E-39 328.4 18.6 191 1-234 21-218 (363)
344 COG0396 sufC Cysteine desulfur 100.0 5.5E-33 1.2E-37 282.5 24.4 230 651-904 3-239 (251)
345 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.5E-33 3.3E-38 304.2 21.8 199 651-889 6-207 (207)
346 COG1122 CbiO ABC-type cobalt t 100.0 4E-34 8.6E-39 306.9 17.1 190 2-234 33-227 (235)
347 TIGR02203 MsbA_lipidA lipid A 100.0 6.4E-34 1.4E-38 355.8 21.6 214 651-891 330-553 (571)
348 cd03214 ABC_Iron-Siderophores_ 100.0 3.9E-34 8.5E-39 301.0 16.5 165 677-887 12-180 (180)
349 cd03288 ABCC_SUR2 The SUR doma 100.0 3.5E-34 7.5E-39 319.3 17.1 212 651-891 19-240 (257)
350 TIGR02314 ABC_MetN D-methionin 100.0 4.7E-34 1E-38 326.3 18.3 190 1-233 33-228 (343)
351 TIGR03258 PhnT 2-aminoethylpho 100.0 5.3E-34 1.2E-38 328.8 18.2 191 1-234 33-227 (362)
352 PRK09452 potA putrescine/sperm 100.0 5.1E-34 1.1E-38 330.0 18.0 191 1-234 42-233 (375)
353 PRK13537 nodulation ABC transp 100.0 5.4E-34 1.2E-38 324.0 17.8 191 1-235 35-227 (306)
354 PRK10789 putative multidrug tr 100.0 5.9E-34 1.3E-38 353.4 19.0 213 651-891 313-535 (569)
355 COG3845 ABC-type uncharacteriz 100.0 2.2E-33 4.8E-38 315.2 21.5 216 651-888 4-223 (501)
356 PRK10938 putative molybdenum t 100.0 8.6E-34 1.9E-38 346.5 19.7 208 651-891 3-221 (490)
357 TIGR01192 chvA glucan exporter 100.0 1.7E-33 3.7E-38 349.7 22.4 212 651-891 334-555 (585)
358 KOG0057 Mitochondrial Fe/S clu 100.0 5.8E-34 1.3E-38 321.8 16.1 191 2-235 381-574 (591)
359 COG1119 ModF ABC-type molybden 100.0 8.3E-34 1.8E-38 292.6 15.6 218 649-888 29-256 (257)
360 COG4586 ABC-type uncharacteriz 100.0 5.9E-34 1.3E-38 294.8 14.4 202 677-890 37-242 (325)
361 COG1137 YhbG ABC-type (unclass 100.0 1.8E-34 3.8E-39 285.3 10.0 193 1-235 32-228 (243)
362 TIGR02204 MsbA_rel ABC transpo 100.0 8.8E-34 1.9E-38 354.7 19.0 213 651-890 337-559 (576)
363 PRK13541 cytochrome c biogenes 100.0 3.6E-33 7.8E-38 297.9 20.7 191 652-874 2-192 (195)
364 COG0410 LivF ABC-type branched 100.0 1.4E-33 3E-38 289.0 16.6 190 1-234 31-225 (237)
365 cd03216 ABC_Carb_Monos_I This 100.0 3.6E-33 7.8E-38 288.0 19.5 157 653-885 2-162 (163)
366 cd03223 ABCD_peroxisomal_ALDP 100.0 4.2E-33 9.1E-38 288.5 19.9 164 653-882 2-165 (166)
367 COG4988 CydD ABC-type transpor 100.0 1.7E-33 3.6E-38 324.4 18.3 192 1-235 349-543 (559)
368 PRK10851 sulfate/thiosulfate t 100.0 2.1E-33 4.6E-38 323.6 19.3 195 1-234 30-225 (353)
369 PRK11607 potG putrescine trans 100.0 1.5E-33 3.3E-38 326.8 18.1 191 1-234 47-238 (377)
370 TIGR01187 potA spermidine/putr 100.0 3.1E-33 6.6E-38 320.6 20.1 185 695-891 1-187 (325)
371 TIGR01188 drrA daunorubicin re 100.0 1.6E-33 3.5E-38 320.8 17.6 191 1-235 21-213 (302)
372 COG0411 LivG ABC-type branched 100.0 1.1E-33 2.3E-38 292.1 14.5 204 1-235 32-239 (250)
373 cd03261 ABC_Org_Solvent_Resist 100.0 2.2E-33 4.8E-38 309.3 18.0 191 1-233 28-224 (235)
374 KOG0059 Lipid exporter ABCA1 a 100.0 5.7E-32 1.2E-36 346.7 33.6 206 679-900 580-789 (885)
375 cd03237 ABC_RNaseL_inhibitor_d 100.0 9.2E-33 2E-37 303.8 22.5 200 679-903 9-216 (246)
376 COG4148 ModC ABC-type molybdat 100.0 7.5E-34 1.6E-38 294.2 12.6 185 1-234 26-217 (352)
377 TIGR02857 CydD thiol reductant 100.0 2.3E-33 5.1E-38 346.7 19.0 200 651-877 320-529 (529)
378 PRK11000 maltose/maltodextrin 100.0 2.8E-33 6E-38 325.5 18.2 191 1-234 31-222 (369)
379 cd03250 ABCC_MRP_domain1 Domai 100.0 5.3E-33 1.2E-37 299.2 18.6 177 678-881 19-203 (204)
380 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.9E-32 4.2E-37 306.1 23.5 198 650-890 38-243 (282)
381 cd03228 ABCC_MRP_Like The MRP 100.0 5.4E-33 1.2E-37 289.7 17.8 151 678-879 16-169 (171)
382 COG1124 DppF ABC-type dipeptid 100.0 3.8E-33 8.2E-38 287.7 16.0 189 2-235 36-231 (252)
383 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-32 2.7E-37 299.7 21.0 187 677-879 14-216 (218)
384 PRK13536 nodulation factor exp 100.0 4.8E-33 1.1E-37 319.0 18.6 191 1-235 69-261 (340)
385 PRK11174 cysteine/glutathione 100.0 3.1E-33 6.8E-38 350.0 18.2 192 1-235 378-572 (588)
386 COG4175 ProV ABC-type proline/ 100.0 1.8E-33 4E-38 296.5 13.4 192 1-235 56-254 (386)
387 COG4674 Uncharacterized ABC-ty 100.0 5E-33 1.1E-37 273.4 14.5 218 651-891 5-232 (249)
388 PRK15177 Vi polysaccharide exp 100.0 1.3E-32 2.8E-37 296.9 18.7 187 679-891 2-189 (213)
389 PRK11153 metN DL-methionine tr 100.0 9.2E-33 2E-37 318.7 18.4 191 1-234 33-229 (343)
390 cd03259 ABC_Carb_Solutes_like 100.0 8.8E-33 1.9E-37 299.8 17.1 185 1-228 28-213 (213)
391 COG4525 TauB ABC-type taurine 100.0 1.9E-32 4.1E-37 269.0 17.5 191 1-236 33-225 (259)
392 cd03265 ABC_DrrA DrrA is the A 100.0 9.8E-33 2.1E-37 300.9 17.4 189 1-232 28-218 (220)
393 PRK10535 macrolide transporter 100.0 7.1E-32 1.5E-36 337.4 27.5 219 651-891 4-229 (648)
394 PRK10522 multidrug transporter 100.0 2.4E-32 5.3E-37 337.7 22.3 207 651-888 322-532 (547)
395 PRK10070 glycine betaine trans 100.0 1.3E-32 2.9E-37 319.5 18.2 191 1-234 56-253 (400)
396 cd03296 ABC_CysA_sulfate_impor 100.0 2.3E-32 5.1E-37 301.8 19.3 194 1-233 30-224 (239)
397 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.8E-32 3.9E-37 307.1 18.4 191 1-234 52-249 (269)
398 COG4608 AppF ABC-type oligopep 100.0 3E-32 6.5E-37 288.4 18.4 191 651-891 4-196 (268)
399 COG2884 FtsE Predicted ATPase 100.0 2.1E-32 4.6E-37 268.8 15.7 184 1-228 30-219 (223)
400 cd03219 ABC_Mj1267_LivG_branch 100.0 2.2E-32 4.7E-37 301.9 17.9 199 1-233 28-230 (236)
401 TIGR01288 nodI ATP-binding ABC 100.0 2.1E-32 4.5E-37 311.9 18.1 191 1-235 32-224 (303)
402 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.7E-32 5.8E-37 297.4 18.0 185 1-230 32-218 (220)
403 PRK11144 modC molybdate transp 100.0 2.3E-32 5.1E-37 316.5 17.9 185 1-234 26-217 (352)
404 cd03301 ABC_MalK_N The N-termi 100.0 3.2E-32 6.9E-37 295.6 17.6 185 1-228 28-213 (213)
405 TIGR01194 cyc_pep_trnsptr cycl 100.0 6E-32 1.3E-36 334.1 22.3 211 650-886 336-551 (555)
406 cd03258 ABC_MetN_methionine_tr 100.0 2.8E-32 6E-37 300.3 17.3 190 1-233 33-228 (233)
407 PRK13637 cbiO cobalt transport 100.0 3.4E-32 7.4E-37 307.3 18.2 191 1-234 35-233 (287)
408 cd03256 ABC_PhnC_transporter A 100.0 3.8E-32 8.2E-37 301.1 18.2 198 1-233 29-232 (241)
409 cd03218 ABC_YhbG The ABC trans 100.0 3.9E-32 8.5E-37 299.0 17.9 189 1-233 28-220 (232)
410 TIGR00960 3a0501s02 Type II (G 100.0 2.3E-32 5E-37 297.3 15.5 180 1-224 31-216 (216)
411 COG5265 ATM1 ABC-type transpor 100.0 8.8E-33 1.9E-37 301.9 12.1 215 649-890 260-482 (497)
412 TIGR03522 GldA_ABC_ATP gliding 100.0 3.8E-32 8.2E-37 309.2 17.9 190 1-235 30-221 (301)
413 PTZ00265 multidrug resistance 100.0 2.5E-32 5.4E-37 364.3 19.0 213 651-879 382-654 (1466)
414 TIGR03415 ABC_choXWV_ATP choli 100.0 4.3E-32 9.3E-37 312.8 18.1 191 1-234 52-253 (382)
415 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.6E-32 9.9E-37 300.0 17.6 190 1-233 29-223 (242)
416 TIGR01187 potA spermidine/putr 100.0 3.9E-32 8.5E-37 311.5 17.6 188 4-234 1-189 (325)
417 cd03269 ABC_putative_ATPase Th 100.0 3.6E-32 7.9E-37 294.3 16.3 183 1-228 28-210 (210)
418 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.2E-32 7E-37 296.7 15.9 180 1-224 32-218 (218)
419 TIGR02142 modC_ABC molybdenum 100.0 5.2E-32 1.1E-36 314.2 18.2 189 1-234 25-220 (354)
420 cd03264 ABC_drug_resistance_li 100.0 5.1E-32 1.1E-36 293.4 16.8 183 1-228 27-211 (211)
421 cd03268 ABC_BcrA_bacitracin_re 100.0 5.3E-32 1.1E-36 292.6 16.9 180 1-228 28-208 (208)
422 cd03234 ABCG_White The White s 100.0 1E-31 2.2E-36 294.0 19.4 188 1-228 35-226 (226)
423 TIGR02315 ABC_phnC phosphonate 100.0 4.5E-32 9.8E-37 300.8 16.7 198 1-233 30-233 (243)
424 PRK15064 ABC transporter ATP-b 100.0 1.5E-31 3.3E-36 329.3 23.0 206 652-890 2-238 (530)
425 cd03226 ABC_cobalt_CbiO_domain 100.0 4.8E-32 1E-36 292.1 16.0 177 1-225 28-205 (205)
426 COG4172 ABC-type uncharacteriz 100.0 2.1E-31 4.6E-36 288.5 20.7 226 651-891 6-244 (534)
427 PRK13634 cbiO cobalt transport 100.0 7.7E-32 1.7E-36 304.9 18.2 190 1-233 35-233 (290)
428 PRK11629 lolD lipoprotein tran 100.0 8.6E-32 1.9E-36 296.1 18.0 186 1-230 37-229 (233)
429 PRK09536 btuD corrinoid ABC tr 100.0 7.7E-32 1.7E-36 313.3 18.4 193 1-233 31-226 (402)
430 cd03263 ABC_subfamily_A The AB 100.0 5.9E-32 1.3E-36 295.1 16.4 187 1-232 30-218 (220)
431 PRK13643 cbiO cobalt transport 100.0 6.7E-32 1.4E-36 305.1 17.4 203 1-247 34-248 (288)
432 TIGR01184 ntrCD nitrate transp 100.0 9.2E-32 2E-36 294.6 17.8 189 1-232 13-201 (230)
433 PRK11819 putative ABC transpor 100.0 2.6E-31 5.7E-36 328.1 24.0 207 651-890 6-246 (556)
434 cd03224 ABC_TM1139_LivF_branch 100.0 7.3E-32 1.6E-36 294.9 16.8 187 1-233 28-219 (222)
435 cd03266 ABC_NatA_sodium_export 100.0 5.7E-32 1.2E-36 294.7 15.8 184 1-228 33-218 (218)
436 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.6E-32 1.2E-36 343.9 18.2 189 2-235 482-673 (686)
437 cd03260 ABC_PstB_phosphate_tra 100.0 6.8E-32 1.5E-36 295.9 16.1 189 1-232 28-226 (227)
438 cd03298 ABC_ThiQ_thiamine_tran 100.0 9E-32 2E-36 291.5 16.7 185 1-228 26-211 (211)
439 cd03222 ABC_RNaseL_inhibitor T 100.0 2E-31 4.3E-36 275.6 18.1 157 676-902 12-171 (177)
440 PRK11831 putative ABC transpor 100.0 1.3E-31 2.8E-36 300.5 18.0 191 1-233 35-231 (269)
441 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.9E-31 4.2E-36 293.9 18.8 190 1-234 29-220 (236)
442 COG1101 PhnK ABC-type uncharac 100.0 1.9E-31 4.2E-36 266.8 16.6 204 675-888 17-232 (263)
443 PRK13647 cbiO cobalt transport 100.0 1.9E-31 4.2E-36 299.4 18.7 189 1-233 33-225 (274)
444 cd03297 ABC_ModC_molybdenum_tr 100.0 1.8E-31 4E-36 289.6 17.8 183 1-228 25-214 (214)
445 PRK13650 cbiO cobalt transport 100.0 1.7E-31 3.8E-36 300.6 18.0 190 1-234 35-228 (279)
446 COG1132 MdlB ABC-type multidru 100.0 1.1E-31 2.4E-36 334.0 17.7 193 1-235 357-552 (567)
447 PRK15079 oligopeptide ABC tran 100.0 2.5E-31 5.4E-36 304.1 18.7 193 1-234 49-250 (331)
448 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 8.9E-32 1.9E-36 343.7 16.6 190 2-235 508-700 (710)
449 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-31 4.2E-36 295.3 17.1 180 1-231 40-219 (257)
450 PRK10771 thiQ thiamine transpo 100.0 2.3E-31 4.9E-36 292.5 17.5 191 1-234 27-218 (232)
451 cd03257 ABC_NikE_OppD_transpor 100.0 2.7E-31 6E-36 291.8 18.0 187 1-228 33-228 (228)
452 PRK13631 cbiO cobalt transport 100.0 2.6E-31 5.6E-36 303.0 18.3 188 1-233 54-263 (320)
453 TIGR02211 LolD_lipo_ex lipopro 100.0 2E-31 4.4E-36 291.0 16.7 181 1-225 33-220 (221)
454 PRK09493 glnQ glutamine ABC tr 100.0 2.2E-31 4.8E-36 294.4 17.1 190 1-233 29-223 (240)
455 COG4559 ABC-type hemin transpo 100.0 1.7E-31 3.6E-36 266.7 14.4 192 1-234 29-229 (259)
456 PRK11264 putative amino-acid A 100.0 2.5E-31 5.4E-36 296.0 17.5 190 1-233 31-231 (250)
457 PRK11248 tauB taurine transpor 100.0 2.9E-31 6.4E-36 294.7 17.9 186 1-231 29-216 (255)
458 PRK11176 lipid transporter ATP 100.0 1.4E-31 3.1E-36 334.9 17.2 193 2-235 372-567 (582)
459 TIGR03375 type_I_sec_LssB type 100.0 1.5E-31 3.3E-36 340.3 17.6 192 2-235 494-688 (694)
460 PRK10790 putative multidrug tr 100.0 1.9E-31 4.2E-36 333.8 18.2 191 2-235 370-563 (592)
461 cd03238 ABC_UvrA The excision 100.0 7.6E-31 1.7E-35 270.9 19.1 154 676-879 7-163 (176)
462 COG4618 ArpD ABC-type protease 100.0 2.2E-31 4.7E-36 297.7 16.1 195 2-237 365-562 (580)
463 TIGR02770 nickel_nikD nickel i 100.0 3.4E-31 7.3E-36 290.5 17.5 191 1-234 14-214 (230)
464 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.1E-31 6.8E-36 292.6 17.2 192 678-889 15-222 (255)
465 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.8E-31 2.1E-35 323.1 23.5 207 651-890 4-244 (552)
466 cd03292 ABC_FtsE_transporter F 100.0 2.5E-31 5.4E-36 288.9 16.0 180 1-224 29-214 (214)
467 PRK13646 cbiO cobalt transport 100.0 2.3E-31 5E-36 300.7 16.1 190 1-234 35-234 (286)
468 TIGR02673 FtsE cell division A 100.0 2.9E-31 6.3E-36 288.3 16.3 179 1-223 30-214 (214)
469 PRK10895 lipopolysaccharide AB 100.0 3.9E-31 8.4E-36 292.6 17.5 190 1-233 31-224 (241)
470 COG4987 CydC ABC-type transpor 100.0 1.2E-31 2.6E-36 303.0 13.6 192 2-235 367-561 (573)
471 TIGR03410 urea_trans_UrtE urea 100.0 3.8E-31 8.3E-36 290.6 17.1 187 1-233 28-219 (230)
472 TIGR01277 thiQ thiamine ABC tr 100.0 6.6E-31 1.4E-35 284.8 18.1 186 1-229 26-212 (213)
473 cd03299 ABC_ModC_like Archeal 100.0 6E-31 1.3E-35 289.4 17.9 190 1-233 27-217 (235)
474 PRK13648 cbiO cobalt transport 100.0 8.3E-31 1.8E-35 294.2 19.0 189 1-233 37-229 (269)
475 PRK13635 cbiO cobalt transport 100.0 4.1E-31 8.9E-36 297.3 16.6 190 1-234 35-228 (279)
476 TIGR01193 bacteriocin_ABC ABC- 100.0 2.3E-31 5E-36 339.5 16.4 192 2-235 503-697 (708)
477 PRK11300 livG leucine/isoleuci 100.0 7.3E-31 1.6E-35 293.2 18.4 205 1-233 33-241 (255)
478 PRK13548 hmuV hemin importer A 100.0 6.4E-31 1.4E-35 293.0 17.8 190 1-233 30-228 (258)
479 PRK13651 cobalt transporter AT 100.0 3.3E-31 7.1E-36 300.4 15.7 190 1-234 35-253 (305)
480 PRK13636 cbiO cobalt transport 100.0 3.9E-31 8.4E-36 298.4 16.2 191 1-234 34-230 (283)
481 PRK10584 putative ABC transpor 100.0 6.7E-31 1.5E-35 288.3 17.6 183 1-227 38-227 (228)
482 TIGR03740 galliderm_ABC gallid 100.0 8.9E-31 1.9E-35 286.1 18.2 182 1-231 28-209 (223)
483 cd03233 ABC_PDR_domain1 The pl 100.0 7.5E-31 1.6E-35 281.1 17.1 166 1-228 35-202 (202)
484 PRK13652 cbiO cobalt transport 100.0 6.5E-31 1.4E-35 295.9 17.3 191 1-234 32-226 (277)
485 COG1134 TagH ABC-type polysacc 100.0 5.1E-30 1.1E-34 265.4 22.4 205 674-903 37-241 (249)
486 PRK11614 livF leucine/isoleuci 100.0 5.8E-31 1.3E-35 290.5 16.5 187 1-233 33-224 (237)
487 TIGR03411 urea_trans_UrtD urea 100.0 6.7E-31 1.4E-35 291.1 17.0 196 1-233 30-229 (242)
488 TIGR00958 3a01208 Conjugate Tr 100.0 3.1E-31 6.8E-36 336.4 16.3 191 1-235 509-702 (711)
489 TIGR03005 ectoine_ehuA ectoine 100.0 8.2E-31 1.8E-35 291.9 17.6 191 1-233 28-234 (252)
490 TIGR00972 3a0107s01c2 phosphat 100.0 7.8E-31 1.7E-35 291.1 17.3 191 1-233 29-230 (247)
491 PRK10619 histidine/lysine/argi 100.0 8.7E-31 1.9E-35 292.4 17.8 189 1-233 33-239 (257)
492 cd03235 ABC_Metallic_Cations A 100.0 6.5E-31 1.4E-35 285.2 16.3 185 1-228 27-213 (213)
493 cd03225 ABC_cobalt_CbiO_domain 100.0 5.5E-31 1.2E-35 285.5 15.5 179 1-223 29-211 (211)
494 TIGR02769 nickel_nikE nickel i 100.0 1.1E-30 2.3E-35 292.7 18.2 192 1-234 39-239 (265)
495 PRK13641 cbiO cobalt transport 100.0 7E-31 1.5E-35 297.0 16.7 190 1-234 35-233 (287)
496 PRK14250 phosphate ABC transpo 100.0 8.5E-31 1.8E-35 289.3 16.9 185 1-233 31-219 (241)
497 cd03267 ABC_NatA_like Similar 100.0 1.1E-30 2.3E-35 287.4 17.6 185 1-228 49-236 (236)
498 COG4136 ABC-type uncharacteriz 100.0 5.9E-31 1.3E-35 247.1 13.0 180 676-864 14-196 (213)
499 cd03300 ABC_PotA_N PotA is an 100.0 1.4E-30 3E-35 286.1 18.4 190 1-233 28-218 (232)
500 PRK13633 cobalt transporter AT 100.0 1.1E-30 2.3E-35 294.6 17.9 190 1-234 38-232 (280)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-193 Score=1753.19 Aligned_cols=1211 Identities=52% Similarity=0.895 Sum_probs=1103.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
|++++||+||||||||++|+|..+......|+|++||++.++..+++.++|++|+|.|++.+||||+|.|+++|++++.|
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 68999999999999999999999876666889999999999988888999999999999999999999999999999887
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
++ ++.+.+++. ..+|.+++++||++|+||.||+...||+||||||||++|++++
T Consensus 223 ~~---~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 223 YD---EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cc---cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 76 333333321 1468999999999999999999999999999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
++++++++||+|+|||+.++.++++.|+++++..+.|.+++++||+++++++||+|++|++|+++|+||.+++++||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccccccc
Q 000853 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFKKYSL 320 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1252)
||.||++++++||++++++..+++++|.....+....+.+++.+.+.++..+.+...+.+.+.++.+.++.+...++|..
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 99999999999999999998888888887777777788899999999999999998888888777777777888899999
Q ss_pred cHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 000853 321 TKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELNMTA 400 (1252)
Q Consensus 321 ~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~ 400 (1252)
+.|.|+++|..|.+..++||...+.+...+.+++++++|++|++... .+..+.+.+.+++||++++.++++++++...+
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~ 515 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTF 515 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998773 44446788999999999999999999999999
Q ss_pred hhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000853 401 SRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIASL 480 (1252)
Q Consensus 401 ~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~ 480 (1252)
+++++|+|+|...+|++|++.++..++++|..++..++|..|+||++|+.+++++||.+++.++..+.++.+++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccc------------cCC-
Q 000853 481 FRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKI------------TSG- 547 (1252)
Q Consensus 481 ~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~------------~~~- 547 (1252)
+++...|+.++++.++++.+++||++|...||+||+|++|++|+.|++++++.|||.+++|+|. ...
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999887 111
Q ss_pred ---cccccchhhhccCcc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCC
Q 000853 548 ---NTTVGRQTLESRGLN-----FDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSS 619 (1252)
Q Consensus 548 ---~~~~g~~~l~~~~~~-----~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1252)
....|.++++.+++. +...|+|++++++++|.++|.++..+++.+.++....+.+...++.......+...
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~- 754 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG- 754 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc-
Confidence 245688888887766 78889999999999999999999999999999888877766554433221111000
Q ss_pred CCCCCcccccCCCCCCCCCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCC
Q 000853 620 GSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVS 699 (1252)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~n 699 (1252)
..... +... ........+..++..+..++++||.+..+.+-.++..| +++++|+|||+.++||.++||||+|
T Consensus 755 -~~~~~---~~~~-~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~S 826 (1391)
T KOG0065|consen 755 -SSSEI---EKLD-DSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGES 826 (1391)
T ss_pred -ccccc---cccc-cccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCC
Confidence 00000 0000 00000123445566677788888888777765554333 5788999999999999999999999
Q ss_pred CCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHH
Q 000853 700 GAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFV 779 (1252)
Q Consensus 700 GaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~ 779 (1252)
||||||||++|+||...+.++|+|++||.+.++..++|.+|||.|+|.|.+.+||||.|.|+|.||++.+.+.+++.++|
T Consensus 827 GAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 827 GAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred CCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 99999999999999988899999999999988788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q 000853 780 NEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVC 858 (1252)
Q Consensus 780 ~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p-~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~ 858 (1252)
+++++.++|++++|.+||.++ +|||.+||||++||.+|+.|| .||+|||||||||++++..|++.+|+++++|+||+|
T Consensus 907 e~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 907 EEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999998 999999999999999999999 899999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCcchhhcccchHHH
Q 000853 859 TIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFGQI 938 (1252)
Q Consensus 859 ~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1252)
|+||||.++++.||++++|.+||++||.||++++.+++++||++++|. +|++..|||||++|+++...+.....||++.
T Consensus 986 TIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~ 1064 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEI 1064 (1391)
T ss_pred EecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHH
Confidence 999999999999999999999999999999999999999999999876 6777779999999999988888788899999
Q ss_pred hhhhhHHHHHHHHhhhcCCCCCC-CCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcc
Q 000853 939 YRESTLHQENKELGKQLSSPSPG-SKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQ 1017 (1252)
Q Consensus 939 ~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~ 1017 (1252)
|++|+++++++++++.++.+.++ ..+....++|++|+|.|++.+++|+++.+||+|.|+++|++.+++.||++|+.||+
T Consensus 1065 w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~ 1144 (1391)
T KOG0065|consen 1065 WKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWK 1144 (1391)
T ss_pred HhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeee
Confidence 99999999999999999888777 55556667899999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000853 1018 QGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVII 1097 (1252)
Q Consensus 1018 ~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i 1097 (1252)
+|+ ++++++|.+|++|.++++.+..+.....+.+..||.+++||+.+|+|++.||++|++++|+|+.++++++|.+|
T Consensus 1145 ~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~ 1221 (1391)
T KOG0065|consen 1145 VGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLI 1221 (1391)
T ss_pred cCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 984 68999999999999999988887777778888899999999999999999999999999999999999999999
Q ss_pred hhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhC
Q 000853 1098 TYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLC 1177 (1252)
Q Consensus 1098 ~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~s 1177 (1252)
+|+|+||.+++.+|++|++.+++..++.+++|+++.+++||.++|+.+.+++++++.+|||+++|++.||.||+|+||+|
T Consensus 1222 ~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~ls 1301 (1391)
T KOG0065|consen 1222 TYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLS 1301 (1391)
T ss_pred eeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcceecccC-------CcccHHHHHhhhcC----CcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 000853 1178 PTSWVLNGMLSSQYGDIEKEISAFG-------ETKTVSGFLDDYFG----FNHDLLGVVGIVLLIFPIVFASLFAYFIGK 1246 (1252)
Q Consensus 1178 p~~y~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~ 1246 (1252)
|++|.+++++..+++|.+..|...+ ...|+++|+..++| +.++.......+..++.+++..++.+.+|+
T Consensus 1302 P~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y 1381 (1391)
T KOG0065|consen 1302 PVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKY 1381 (1391)
T ss_pred cHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHH
Confidence 9999999999999999988775332 12789999999999 777766555556677889999999999999
Q ss_pred cccccC
Q 000853 1247 LNFQRR 1252 (1252)
Q Consensus 1247 ~~~~~~ 1252 (1252)
.++++|
T Consensus 1382 ~~~wrn 1387 (1391)
T KOG0065|consen 1382 LNFWRN 1387 (1391)
T ss_pred HHHHHh
Confidence 999886
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-189 Score=1854.45 Aligned_cols=1252 Identities=57% Similarity=1.030 Sum_probs=1085.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||||+|+|+++|+.+++|+|.+||+++++...++.++||+|+|.+++++||+|||.|++++++.+.+
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999886667999999999987666677899999999999999999999999988765544
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
.+...+..+.++..+..|+.+.+.++++....+.+.+..++++++.+||++++||.||+...+||||||||||+||++|+
T Consensus 273 ~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~ 352 (1470)
T PLN03140 273 YDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIV 352 (1470)
T ss_pred ccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhc
Confidence 43333344445555555556666777776666666666789999999999999999999999999999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
++|+++||||||+|||+.++.++++.|+++++..++|+++++|||+++++++||+|++|++|+++|+|+.+++.+||+++
T Consensus 353 ~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~l 432 (1470)
T PLN03140 353 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432 (1470)
T ss_pred CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHc
Confidence 99999999999999999999999999999987778999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccccccc
Q 000853 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFKKYSL 320 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1252)
||.||++.||+||++++.++.+++++|.....|....+++++.++|+.+..++...++.+.+..+...++.....+.|..
T Consensus 433 Gf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred CCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 99999999999999999988766555544444445577889999999887776665554433322222222233456888
Q ss_pred cHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCc-chHhHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 000853 321 TKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAV-DVLHANAYLGALFYALMILIVNGFPELNMT 399 (1252)
Q Consensus 321 ~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~-~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 399 (1252)
++|.|++.|.+|.+..++||+..+..+.++.+++++++|++|++.+... +..+...+.|.+||+++..+++++.++...
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875443 223456678999999888888888999999
Q ss_pred hhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 400 ASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAIAS 479 (1252)
Q Consensus 400 ~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~ 479 (1252)
+.++++|+|||...+|++|+|++++.+.++|+.++.+++|+.++|||+|+.+++++|+.+++++++.++++.++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCcccccc--CCcccccchhhh
Q 000853 480 LFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKIT--SGNTTVGRQTLE 557 (1252)
Q Consensus 480 ~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~--~~~~~~g~~~l~ 557 (1252)
+++++.+|..+++++++++++++||+++...||.||+|++|+||+.|++++++.|||.+..|.... ......|..+++
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~ 752 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN 752 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887765322 224578999999
Q ss_pred ccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCC--------CCC---CC---
Q 000853 558 SRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGS--------SGS---DR--- 623 (1252)
Q Consensus 558 ~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~--- 623 (1252)
.+++...+.|+|.+++++++|.++|.++.++++.+.+...........+............ ... ..
T Consensus 753 ~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1470)
T PLN03140 753 IFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQR 832 (1470)
T ss_pred hcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccccccccccccc
Confidence 9999888889999999999999999999999999987544433332211111000000000 000 00
Q ss_pred -C-ccc----ccCC-CCCCCCCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEe
Q 000853 624 -D-KKH----IDAP-LKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALM 696 (1252)
Q Consensus 624 -~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~ 696 (1252)
. ... .... ..........+..++..+.+++|+|++|.++.+...++.+...+++++|+|||++++|||++||+
T Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~ 912 (1470)
T PLN03140 833 MSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALM 912 (1470)
T ss_pred cccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEE
Confidence 0 000 0000 00000111223345677889999999999987765444444445668999999999999999999
Q ss_pred cCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH
Q 000853 697 GVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKA 776 (1252)
Q Consensus 697 G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~ 776 (1252)
||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+|++.|++.+|.+.+.+.++++
T Consensus 913 G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~ 992 (1470)
T PLN03140 913 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM 992 (1470)
T ss_pred CCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999999999999998776567999999998865445667899999999999999999999999888765555566667
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Q 000853 777 EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTV 856 (1252)
Q Consensus 777 ~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tv 856 (1252)
++++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|++|||||||||||+.++..+++.|++++++|+||
T Consensus 993 ~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tV 1072 (1470)
T PLN03140 993 MFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1072 (1470)
T ss_pred HHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 78999999999999999999988778999999999999999999999999999999999999999999999999889999
Q ss_pred EEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCcchhhcccchH
Q 000853 857 VCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIETELGVDFG 936 (1252)
Q Consensus 857 i~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1252)
|+++|||+.++++.||++++|.+||+++|+||+++..+++.+||++++|.++||++.|||||++|+++...+.....+|+
T Consensus 1073 I~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~ 1152 (1470)
T PLN03140 1073 VCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFA 1152 (1470)
T ss_pred EEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHH
Confidence 99999999778899999999987799999999988778999999999777679999999999999987665555556899
Q ss_pred HHhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 000853 937 QIYRESTLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFW 1016 (1252)
Q Consensus 937 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~ 1016 (1252)
+.|++|+.+++.++.++++..+.+........++++.++|+|+++|++|+++++||||.++.+|+++++++|+++|++||
T Consensus 1153 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~ 1232 (1470)
T PLN03140 1153 EHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFW 1232 (1470)
T ss_pred HHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988877666665544433333345678899999999999999999999999999999999999999999999
Q ss_pred ccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 000853 1017 QQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVI 1096 (1252)
Q Consensus 1017 ~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~ 1096 (1252)
+++++..++++++++.|++|+++++.++.++++++|.+..||++|+||+++|+|++++|++|++++|+|+.++++++|.+
T Consensus 1233 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~ 1312 (1470)
T PLN03140 1233 KVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTL 1312 (1470)
T ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhh
Q 000853 1097 ITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYL 1176 (1252)
Q Consensus 1097 i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~ 1176 (1252)
|+|||+||++++.+||+|+++++++.++++++|+++++++|+.++|..+++++++++++||||++|+++||+||+|++|+
T Consensus 1313 i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~i 1392 (1470)
T PLN03140 1313 IVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWI 1392 (1470)
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcceecccCC--cccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000853 1177 CPTSWVLNGMLSSQYGDIEKEISAFGE--TKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252 (1252)
Q Consensus 1177 sp~~y~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1252 (1252)
||++|+++|++.|||++.+.+|.++|. ..++.+|++++|||+++++|++++++++|+++|+++++++++++|||||
T Consensus 1393 sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1393 CPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999998877776652 2578899999999999999999999999999999999999999999998
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.2e-168 Score=1659.45 Aligned_cols=1199 Identities=31% Similarity=0.532 Sum_probs=984.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHS-LKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~-~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||||+|+|+.++. ...+|+|.+||.++++.. .++.++||+|+|.+++++||+||+.|+++++.+
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999997421 125999999998875322 345699999999999999999999999877643
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
..+.....+ .+ + .+..++.+++.+||+++.||.||+...+||||||||||+||+
T Consensus 169 ~~~~~~~~~---~~-------------~----------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~ 222 (1394)
T TIGR00956 169 QNRPDGVSR---EE-------------Y----------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAE 222 (1394)
T ss_pred CCCCCCCCH---HH-------------H----------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHH
Confidence 211100000 00 0 011246689999999999999999899999999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f 237 (1252)
+|+++|+|++|||||||||+.++.++++.|+++++..|+|+++++|||+.+++++||+|++|++|+++++|+.+++.+||
T Consensus 223 aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF 302 (1394)
T TIGR00956 223 ASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302 (1394)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999987668999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCC-----------
Q 000853 238 EDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKS----------- 306 (1252)
Q Consensus 238 ~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----------- 306 (1252)
+++||.||++.||+||+.++.++.++.. ... .+.....+++++.+.|+.+..+++..++.+......
T Consensus 303 ~~lG~~~p~~~n~aDfl~~~~~~~~~~~-~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1394)
T TIGR00956 303 EKMGFKCPDRQTTADFLTSLTSPAERQI-KPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE 380 (1394)
T ss_pred HHcCCCCCCCCChHHHHHhccChhhhhc-ccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH
Confidence 9999999999999999999987654321 111 011123467788888888876555444433211110
Q ss_pred ----cccccccccccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHH
Q 000853 307 ----ETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALF 382 (1252)
Q Consensus 307 ----~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf 382 (1252)
+........+.+..++|+|++.|.+|.+...+||+..+..+.++.+++++++|++|++.+. +..+.+.+.|++|
T Consensus 381 ~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~--~~~~~~~r~g~lf 458 (1394)
T TIGR00956 381 SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK--NTSDFYSRGGALF 458 (1394)
T ss_pred HHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHHHH
Confidence 0000111234577889999999999999999999999999999999999999999997653 4446678899999
Q ss_pred HHHHHHHHhhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHH
Q 000853 383 YALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLL 462 (1252)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~ 462 (1252)
+++++..+.++.++.....+|++|+|||..++|++++|++++.+.++|+.++.+++|+.++|||+|+..++++|+.++++
T Consensus 459 ~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~ 538 (1394)
T TIGR00956 459 FAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHH
Confidence 99998888888888777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccc
Q 000853 463 LFTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWE 542 (1252)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~ 542 (1252)
.++..+++.+++.++++++++...|..+++++++++++++||+++...||+||+|++|+||++|++++++.|||.+..++
T Consensus 539 ~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~ 618 (1394)
T TIGR00956 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFE 618 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ccc--C----------------------C-cccccchhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000853 543 KIT--S----------------------G-NTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPG 597 (1252)
Q Consensus 543 ~~~--~----------------------~-~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~ 597 (1252)
|.. + + ....|.++++. .+.+...++|.+++++++|.++|.++.++++.+.+...
T Consensus 619 C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~ 697 (1394)
T TIGR00956 619 CSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAK 697 (1394)
T ss_pred ccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 631 0 0 12356677764 55566778999999999999999999999999877544
Q ss_pred Ccccccchhccc--c----cccccCCCCCCCCCcccccCCCCCCCCCCCCCcc-CC--CCCcEEEEEeEEEEEecCcccc
Q 000853 598 KSRTIIAYEKYS--K----LQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMV-LP--FEPLTLTFEDVQYYVDTPSAMK 668 (1252)
Q Consensus 598 ~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 668 (1252)
..+.....++.. . ..+.+......++.......+... ..+...... .+ .....++++|+++.++.+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---- 772 (1394)
T TIGR00956 698 QKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTD-ESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---- 772 (1394)
T ss_pred CCCceEeeccccccchhhcccccccccccccccccCCCCcccc-ccccccccccccccCCCceEEEEeeEEEecCC----
Confidence 433222221100 0 000000000000000000000000 000000000 00 112458999999887422
Q ss_pred cccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCC
Q 000853 669 KRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDI 747 (1252)
Q Consensus 669 ~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~ 747 (1252)
.+++.+|+|||++++|||++||+||||||||||||+|+|+.+++ +.+|+|.+||++.. ..+++.+|||+|+|.
T Consensus 773 -----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~ 846 (1394)
T TIGR00956 773 -----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDL 846 (1394)
T ss_pred -----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeeccccc
Confidence 13467999999999999999999999999999999999987643 46799999999874 356778999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc-EEE
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS-IIF 826 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~-ill 826 (1252)
+++.+||+|++.|++.+|.+...+.++++++++++++.++|.++.|+.+|.++ .+|||||||||+||++|+.+|+ ||+
T Consensus 847 ~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLl 925 (1394)
T TIGR00956 847 HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLF 925 (1394)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEE
Confidence 99999999999999988865555666777889999999999999999998654 4899999999999999999997 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCc
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGV 906 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~ 906 (1252)
|||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|.+||+++|.|++++..+++.+||+.. |.
T Consensus 926 LDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~ 1004 (1394)
T TIGR00956 926 LDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GA 1004 (1394)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CC
Confidence 99999999999999999999999888999999999998767788999999998779999999988778899999997 44
Q ss_pred ccCCCCCCcccceeeccCCcchhhcccchHHHhhhhhHHHHHHHHhhhcCCCCCCC---CCCCCCCCCCCchHHHHHHHH
Q 000853 907 LKIKDNYNPATWMLEVSSSSIETELGVDFGQIYRESTLHQENKELGKQLSSPSPGS---KDLHFPTHFPQNGWEQFKACL 983 (1252)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~ 983 (1252)
++||++.|||||++|+++...+.....+|.+.|++|+.+++..+.++....+.... .......+++.|+|+|+++|+
T Consensus 1005 ~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~ 1084 (1394)
T TIGR00956 1005 PKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVL 1084 (1394)
T ss_pred CCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHH
Confidence 57999999999999998765443334689999999988776654444332221111 111112468899999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHH-H
Q 000853 984 WKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVL-Y 1062 (1252)
Q Consensus 984 ~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~-~ 1062 (1252)
+|+++++||||.++++|+++++++|+++|++||++++ +++++++|.|++|+++++.++. +...+|.|+.||.+| +
T Consensus 1085 ~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~ 1160 (1394)
T TIGR00956 1085 WRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEV 1160 (1394)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 4688999999999988877765 445667788888886 8
Q ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 000853 1063 RERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYK-------IFWSLHGTFCNLLYFNYMGMLMVSL 1135 (1252)
Q Consensus 1063 rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~ 1135 (1252)
||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|++++++
T Consensus 1161 RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~ 1240 (1394)
T TIGR00956 1161 RERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISF 1240 (1394)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766 9999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcceecc---------cC----
Q 000853 1136 TPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA---------FG---- 1202 (1252)
Q Consensus 1136 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~~~~~---------~~---- 1202 (1252)
+|+..+|+.++++++.++++||||++++++||+||+|++|+||++|+++|++.|||++.+.+|.. +|
T Consensus 1241 ~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~ 1320 (1394)
T TIGR00956 1241 NPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCG 1320 (1394)
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999988755421 01
Q ss_pred ---------------------Cc-----ccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000853 1203 ---------------------ET-----KTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNF 1249 (1252)
Q Consensus 1203 ---------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1249 (1252)
.| .++.+ ++..+|++.++.|+|++++++|++++ ++++++|.+..+
T Consensus 1321 ~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~-~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1321 EYMKPYLENAGGYLLNPNATDSCSFCQYSYTND-FLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred HHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHH-HHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 01 13344 45578999999999999999999988 888888887644
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.9e-96 Score=904.64 Aligned_cols=584 Identities=24% Similarity=0.408 Sum_probs=483.3
Q ss_pred CCcEEEEEeEEEEEecCcc----------------cccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHh
Q 000853 648 EPLTLTFEDVQYYVDTPSA----------------MKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLS 711 (1252)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 711 (1252)
.++++++.|++|.++.... .++....++++.+|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 4678999999998864420 111122334678999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000853 712 GRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI 791 (1252)
Q Consensus 712 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~ 791 (1252)
|+.+++..+|+|.+||++... ..++.+|||+|++.+++.+||+|++.|++.++.+.....++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999998643 3345689999999999999999999998877755444556667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHh
Q 000853 792 KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAF 871 (1252)
Q Consensus 792 ~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 871 (1252)
.|+.+|+...++||||||||++||++|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.+.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999988889999999999999999999999999999999999999999999999998889999999999987788999
Q ss_pred cceeeeecCcEEEEecCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCcchh------hc---ccchHHHhhhh
Q 000853 872 DDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIET------EL---GVDFGQIYRES 942 (1252)
Q Consensus 872 d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~s 942 (1252)
|++++|. +|++++.|++ +++.+||+++| .+||++.|||||++++.+.+.+. .. .....+.|+..
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~G--~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESVG--FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHCC--CCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999997 5899999997 57899999995 47999999999999998753210 00 01122334321
Q ss_pred hHHHHHHHHhhh--cCC-CCC-----CCCCC-CCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 000853 943 TLHQENKELGKQ--LSS-PSP-----GSKDL-HFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGI 1013 (1252)
Q Consensus 943 ~~~~~~~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~ 1013 (1252)
. .++..+..+. ... ... ..+.. .....+..+||+|+.+|++|++++ |||+.+...|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111110 000 000 00000 011234578999999999999988 89999999999999999999999
Q ss_pred HhcccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000853 1014 LFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVI 1093 (1252)
Q Consensus 1014 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~ 1093 (1252)
+||+++ ..++++|.|++||++++.++.+++++++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999974 467999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 000853 1094 YVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWA 1173 (1252)
Q Consensus 1094 ~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~ 1173 (1252)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++|+..+|+.++|++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCcc-----eecccC-CcccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000853 1174 YYLCPTSWVLNGMLSSQYGDIEK-----EISAFG-ETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKL 1247 (1252)
Q Consensus 1174 ~y~sp~~y~~~~l~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~ 1247 (1252)
+|+||++|+||++++|||++.+. +|..+. .......+ ....+++..+.|.++++|++++++||+++|++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF-VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc-chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999986532 342111 00011112 223344456789999999999999999999999988
Q ss_pred cc
Q 000853 1248 NF 1249 (1252)
Q Consensus 1248 ~~ 1249 (1252)
+|
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 75
No 5
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-96 Score=897.60 Aligned_cols=580 Identities=32% Similarity=0.538 Sum_probs=506.0
Q ss_pred CCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEEC
Q 000853 648 EPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIG 726 (1252)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~ 726 (1252)
.++.+.|+|+++..+.+.. +.+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567899999987754321 3578999999999999999999999999999999999998763 689999999
Q ss_pred CeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 727 GYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 727 g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
|++...+.+++.+|||+|||.+++++||+|++.|+|.+|++...+.++++++|+++++.+||.+++|+++|+...+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888889999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 899999
Q ss_pred cCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCc-chhhcccchHHHhhhh------hHHHHHHH-HhhhcCCC
Q 000853 887 GPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSS-IETELGVDFGQIYRES------TLHQENKE-LGKQLSSP 958 (1252)
Q Consensus 887 g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s------~~~~~~~~-~~~~~~~~ 958 (1252)
|++ +++.+||++.| .+||++.||+||++|+.+.. ..+.. .+..+.++.. +...+..+ ..+.....
T Consensus 253 G~~----~~~~~ff~~~G--~~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG--FPCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS 325 (613)
T ss_pred cCH----HHHHHHHHhCC--CCCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhcccc
Confidence 998 57899999995 46999999999999988742 11100 0111111110 00011100 00011000
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHH
Q 000853 959 SPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSA 1038 (1252)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~ 1038 (1252)
. ..+.....+||.|+++|++|.+++.+|||.+...|.++.+++|+++|++||++++ +..+++++.|++|+.
T Consensus 326 ----~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 326 ----K--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFI 396 (613)
T ss_pred ----c--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHH
Confidence 0 0111126899999999999999999999999999999999999999999999965 456777999999999
Q ss_pred HHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 000853 1039 AIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGT 1118 (1252)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~ 1118 (1252)
+.+..+..+.+.++.|+.||++|.||+.+|+|+.++|++|+.++++|+.++.+++|.+|+|||+|++++..+|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCccee
Q 000853 1119 FCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEI 1198 (1252)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~~~ 1198 (1252)
++..++++++|++++++.||...|+.++++++++|++|+||+++.++||+||+|++|+|+++|++||+++|||.+....|
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~ 556 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRC 556 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999733333
Q ss_pred ccc--CCcccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000853 1199 SAF--GETKTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252 (1252)
Q Consensus 1199 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1252 (1252)
... ..+...++.++.+.++++++.|.|+.++++++++||+++|++|++..+.+|
T Consensus 557 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 557 FLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred ccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 222 122333445677899999999999999999999999999999998776654
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.6e-94 Score=896.65 Aligned_cols=568 Identities=30% Similarity=0.462 Sum_probs=497.3
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~t 753 (1252)
+++.+|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987643 358999999998765667788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~-~~~lSgGqrqrv~ia~al~~~p~illlDEPTs 832 (1252)
|+||+.|++.++.+.....++++++++++++.+||.+++|+.+|+++ .++|||||||||+||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998876666667778889999999999999999999753 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCcccCCCC
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLKIKDN 912 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 912 (1252)
|||+.++..+++.|++++++|+|||+++|||+.++.+.||++++|. +|+++|.|++ +++.+||+++| .+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 9999999999999999988899999999999888999999999997 5899999998 56889999995 479999
Q ss_pred CCcccceeeccCCcchhh-----cccchHHHhhhhhHHHHHHHHhhhcCCCCC---CCCCCCCCCCCCCchHHHHHHHHH
Q 000853 913 YNPATWMLEVSSSSIETE-----LGVDFGQIYRESTLHQENKELGKQLSSPSP---GSKDLHFPTHFPQNGWEQFKACLW 984 (1252)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 984 (1252)
.||+||++++.+.+.+.. ...++.+.|++++.+++..+.......+.. .........++..+||.|+++|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999876543211 112455666666655544433222111110 011111223567899999999999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHH
Q 000853 985 KQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVATERTVLYRE 1064 (1252)
Q Consensus 985 R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE 1064 (1252)
|++++.||||.++..|+++++++|+++|++||+++. ++++++++.|++|++++++++.+++.+++.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875 46789999999999999999988888889999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 000853 1065 RFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASI 1144 (1252)
Q Consensus 1065 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1144 (1252)
+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcc-eecc---cCCcccHHHHHhhhcCCccc
Q 000853 1145 LASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEK-EISA---FGETKTVSGFLDDYFGFNHD 1220 (1252)
Q Consensus 1145 ~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 1220 (1252)
+++++++++++|+||+++.++||+||+|++|+||++|++++++.|||.+.+. +|.. ++.+...++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999988764 4421 11121224778889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000853 1221 LLGVVGIVLLIFPIVFASLFAYFIGKLNFQRR 1252 (1252)
Q Consensus 1221 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 1252 (1252)
+.|.++++|++++++|++++|++||+-.+.+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999777766
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1e-91 Score=931.57 Aligned_cols=565 Identities=23% Similarity=0.351 Sum_probs=491.8
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--CeEEEEEEECCeeCCc--ccccceEEEEccCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSP 750 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 750 (1252)
+++++|+|||+++++||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+... ..+++.++|++|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 356799999999999999999999999999999999998632 2469999999987642 235667999999999999
Q ss_pred CCCHHHHHHHHHHccCCC----CCCHHHHHHH-HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000853 751 NITVEESVIFSAWLRLSP----EIDLKTKAEF-VNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~----~~~~~~~~~~-~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~il 825 (1252)
.+||+|++.|++.++.+. +...++.+++ ++++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998877532 1233343333 46789999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCC
Q 000853 826 FMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIP 904 (1252)
Q Consensus 826 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~ 904 (1252)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++.+.||++++|.+ |+++|+|++ +++.+||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999864 999999999998789999999999985 899999997 57899999995
Q ss_pred CcccCCCCCCcccceeeccCCcch-------h---hcccchHHHhhhhhHHHHHHHHhhhcCCC--C-------------
Q 000853 905 GVLKIKDNYNPATWMLEVSSSSIE-------T---ELGVDFGQIYRESTLHQENKELGKQLSSP--S------------- 959 (1252)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~------------- 959 (1252)
.+||++.|||||++++++.+.. . ....++++.|++|+.+++..+.++..... .
T Consensus 307 --~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 --FKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred --CCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 3799999999999998875321 1 12347889999998777655443321111 0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHHH
Q 000853 960 PGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAA 1039 (1252)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1039 (1252)
...+.....+++..|+|+|+++|++|+++++||||.+++.|+++++++|+++|++||+++. +++++++|.|++||++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0001112234678899999999999999999999999999999999999999999999975 4578999999999999
Q ss_pred HHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHH
Q 000853 1040 IFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTF 1119 (1252)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~ 1119 (1252)
++.++.++.++ +.++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887765 45667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcceec
Q 000853 1120 CNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEIS 1199 (1252)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~~~~ 1199 (1252)
++.++++++|+++++++||..+|+.+++++++++++|+||++|+++||+||+|++|+||++|+|||+++|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777663
Q ss_pred c------------------------cCCc-ccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000853 1200 A------------------------FGET-KTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQ 1250 (1252)
Q Consensus 1200 ~------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1250 (1252)
. +|++ +++.+|+...||++.+++|+|++||++|+++|+++++++++++++.
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 1112 3567888878999999999999999999999999999999998743
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.6e-91 Score=917.62 Aligned_cols=566 Identities=25% Similarity=0.387 Sum_probs=483.9
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
++.+|+|||+.++|||+++|+||||||||||||+|+|+.++. ..+|+|.+||++......++.++|++|+|.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 567999999999999999999999999999999999987642 3489999999987544446789999999999999999
Q ss_pred HHHHHHHHHccCCCC-------CCHHHH------------------------HHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 755 EESVIFSAWLRLSPE-------IDLKTK------------------------AEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~-------~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
+|++.|+++++.... ...+++ +..++++++.+||.+++|+.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999999987764211 111111 1235789999999999999999998999
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||+.++++.||++++|.+ |+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ 415 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQ 415 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ce
Confidence 999999999999999999999999999999999999999999999986 4899999999998889999999999975 89
Q ss_pred EEEecCCCCcchhHHHHHhhCCCcccCCCCCCcccceeeccCCcch-h-----------hcccchHHHhhhhhHHHHHHH
Q 000853 883 IIYSGPLGQHSCKVIDYFESIPGVLKIKDNYNPATWMLEVSSSSIE-T-----------ELGVDFGQIYRESTLHQENKE 950 (1252)
Q Consensus 883 ~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~ 950 (1252)
++|+||+ +++.+||+++| .+||++.|||||++++++.... . ....++++.|++|+.+++..+
T Consensus 416 ivy~G~~----~~~~~yF~~lG--f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~ 489 (1470)
T PLN03140 416 IVYQGPR----DHILEFFESCG--FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLEN 489 (1470)
T ss_pred EEEeCCH----HHHHHHHHHcC--CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHH
Confidence 9999997 57899999995 3799999999999999875322 1 112467888998887765543
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHh
Q 000853 951 LGKQLSSPSPGSKDLHFPTHFPQNGWEQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFN 1030 (1252)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~ 1030 (1252)
.++...............++|..++|.|++.|++|+++.++|||.++..|+++.+++|+++|++||+++.+..+..+.+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~ 569 (1470)
T PLN03140 490 ELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGAL 569 (1470)
T ss_pred HHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Confidence 33221101111111112346889999999999999999999999999999999999999999999999765444445667
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH
Q 000853 1031 MFGAMYSAAIFFGINNCSSVVPLVATERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYK 1110 (1252)
Q Consensus 1031 ~~g~lf~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~ 1110 (1252)
+.|++||++++.++.++.+ ++.++.||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++
T Consensus 570 ~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~ 648 (1470)
T PLN03140 570 YIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASR 648 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhH
Confidence 8899999999888877655 577789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHh
Q 000853 1111 IFWSLHGTFCNLLYFNYMGMLMVSLTPNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQ 1190 (1252)
Q Consensus 1111 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~ 1190 (1252)
||+|+++++++.++++++++++++++|++.+|+.+++++++++++|+||++|+++||+||+|++|+||++|+++|+++||
T Consensus 649 Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NE 728 (1470)
T PLN03140 649 FFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcce-ecccCCcccHHHHHhhhcCCccc--chhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000853 1191 YGDIEKE-ISAFGETKTVSGFLDDYFGFNHD--LLGVVGIVLLIFPIVFASLFAYFIGKLNF 1249 (1252)
Q Consensus 1191 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1249 (1252)
|.+.... +.+.+.+.+.|+.+++.+|+..+ +.|+++++|++|+++|+++++++|++++.
T Consensus 729 f~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred ccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9775432 22223233345555688999765 56999999999999999999999999873
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-84 Score=791.12 Aligned_cols=566 Identities=27% Similarity=0.450 Sum_probs=499.2
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCH
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+.++|+|+|+.++||+++.++||+||||||||++|+|..... ...|+|.+||++.+....++.++|++|+|.|+|.+||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976432 2367999999987654447889999999999999999
Q ss_pred HHHHHHHHHccCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000853 755 EESVIFSAWLRLSPE----IDLKTKA-EFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~----~~~~~~~-~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDE 829 (1252)
+|+|.|+++++.+.. .++.++. +..+.+++.+||++++|+++|++..|++||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987632 2222222 25678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhCCCccc
Q 000853 830 PTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESIPGVLK 908 (1252)
Q Consensus 830 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~ 908 (1252)
+|+|||+.|+.++.+.|+++++. +.|++++.|||+.+++++||++++|.+ |+++|+||. +++.+||+++| ..
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G--f~ 359 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG--FK 359 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC--cc
Confidence 99999999999999999999865 899999999999999999999999986 899999998 56899999985 47
Q ss_pred CCCCCCcccceeeccCCcchh-----------hcc-cchHHHhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCchH
Q 000853 909 IKDNYNPATWMLEVSSSSIET-----------ELG-VDFGQIYRESTLHQENKELGKQLSSPSPGSKDLHFPTHFPQNGW 976 (1252)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1252)
||+..++|||..++++...+. ... .++++.|.+|+.+++.....+........++.....++|..|+|
T Consensus 360 cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~ 439 (1391)
T KOG0065|consen 360 CPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYW 439 (1391)
T ss_pred CCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHH
Confidence 999999999999998832211 112 47889999998887766544332222222333344567899999
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhcccCCCCccHHhHHhHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000853 977 EQFKACLWKQNLSYWRNPSYNLRRIVFTCAMSLLYGILFWQQGKKIKTQQEVFNMFGAMYSAAIFFGINNCSSVVPLVAT 1056 (1252)
Q Consensus 977 ~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~ 1056 (1252)
.|++.|+.|.++.+.||..+...++++.+++|+++|++|++... .+..+.+.|.|++||++++.+++++.++ +...+
T Consensus 440 ~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~ 516 (1391)
T KOG0065|consen 440 EQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQ 516 (1391)
T ss_pred HHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999873 4567789999999999999999988876 44557
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000853 1057 ERTVLYRERFAGMYSPWAYSFAQVLVEVPYLFIQAVIYVIITYPMIGYYWSAYKIFWSLHGTFCNLLYFNYMGMLMVSLT 1136 (1252)
Q Consensus 1057 er~~~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1136 (1252)
.||||+|||...+|+++||.++..+.++|+.++.+++|.+|+||++||.+++++||.++++++++..+++++++++++++
T Consensus 517 ~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~ 596 (1391)
T KOG0065|consen 517 RLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLS 596 (1391)
T ss_pred hcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcceecc----------------
Q 000853 1137 PNVQLASILASSSYSMLNLFCGYSITKRQIPKWWIWAYYLCPTSWVLNGMLSSQYGDIEKEISA---------------- 1200 (1252)
Q Consensus 1137 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~p~~~~w~~y~sp~~y~~~~l~~~~~~~~~~~~~~---------------- 1200 (1252)
+++..|++++++.+++..+++||+||.++||+||+|++|+||+.|++|++++|||++.+.+|.+
T Consensus 597 ~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~ 676 (1391)
T KOG0065|consen 597 RTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCA 676 (1391)
T ss_pred chHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999998877651
Q ss_pred -----cCCc-ccHHHHHhhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000853 1201 -----FGET-KTVSGFLDDYFGFNHDLLGVVGIVLLIFPIVFASLFAYFIGKLNFQR 1251 (1252)
Q Consensus 1201 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1251 (1252)
+|+. +.+.+|+..+|++++.|.|+++||++||.++|.++..+++.|+++-+
T Consensus 677 ~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 677 ATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLK 733 (1391)
T ss_pred hhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1111 34577788888899999999999999999999999999999998643
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-75 Score=720.57 Aligned_cols=750 Identities=21% Similarity=0.273 Sum_probs=411.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|||||||||||++++|.++++|+ +|+|.+||.++++.+. +..+|.|.|+|++| +.||+|||.|+.
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~----- 451 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK----- 451 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----
Confidence 37999999999999999999999997 9999999999987654 56799999998766 579999999863
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
.....+++.++.|.++. .+.+ ..|+++.||.||+.+.. |||||||||+|||
T Consensus 452 --~dat~~~i~~a~k~ana-----------------------~~fi---~~lp~g~~T~vge~g~q-LSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 452 --PDATREEIEEAAKAANA-----------------------HDFI---LKLPDGYDTLVGERGVQ-LSGGQKQRIAIAR 502 (1228)
T ss_pred --CcccHHHHHHHHHHccH-----------------------HHHH---HhhHHhhcccccCCCCC-CChHHHHHHHHHH
Confidence 12233444444443221 1222 34899999999994333 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f 237 (1252)
||+.+|+|||||||||+||+.+++.+++.|++..+ |+|+|+..|. -+..+.+|+|++|++|+|++.|+|+|+...
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHR--LStIrnaD~I~v~~~G~IvE~G~h~ELi~~- 577 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHR--LSTIRNADKIAVMEEGKIVEQGTHDELIAL- 577 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeee--hhhhhccCEEEEEECCEEEEecCHHHHHhc-
Confidence 99999999999999999999999999999998764 5677665443 345666999999999999999999998752
Q ss_pred HhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHH--HHhhc---cCCCcccccc
Q 000853 238 EDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEE--ELAHS---FNKSETHKKA 312 (1252)
Q Consensus 238 ~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~---~~~~~~~~~~ 312 (1252)
..-.++.+.........+.. +.+.. ..++.....+.+........ ..... ....+.....
T Consensus 578 ---------~G~Y~~lv~~Q~~~~~~~~~--~~~~~----~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 642 (1228)
T KOG0055|consen 578 ---------GGIYSSLVRLQELEKAAEDE--EEEES----LKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEP 642 (1228)
T ss_pred ---------cchHHHHHHHHhhhhhhhcc--ccccc----hhhhhhhccccccccccccCCccccccccccccccccccc
Confidence 01112222111100000000 00000 00000000000000000000 00000 0000000000
Q ss_pred cccccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHH-------HHHHhhheeccc-cCCcchHh-HHHHHHHHHH
Q 000853 313 LSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVI-------IASITMTAFLRS-QLAVDVLH-ANAYLGALFY 383 (1252)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~-------~~~~~g~~f~~~-~~~~~~~~-~~~~~g~lf~ 383 (1252)
........++ +|-+...+..+..+.+..+..++ .+..++.++--. ..+.+... .......+|.
T Consensus 643 ~~~~~~~~s~--------~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~ 714 (1228)
T KOG0055|consen 643 VSEEDEKVSF--------WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFL 714 (1228)
T ss_pred cccccccccH--------HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 0000112223 33344444444433332222221 111222111000 11111111 1112222222
Q ss_pred HHHHHH--HhhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhc------------cCC
Q 000853 384 ALMILI--VNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYV------------IGY 449 (1252)
Q Consensus 384 ~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l------------~gl 449 (1252)
.+.... ....+.+.+......+- .++-...+..++...+.||- ...
T Consensus 715 ~l~~~~~i~~~~q~~~f~~~ge~Lt--------------------~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~D 774 (1228)
T KOG0055|consen 715 GLGIVSGITNFLQHYFFGIAGEKLT--------------------KRLRSMMFRALLRQEVGWFDDPENSGALSSRLATD 774 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcc
Confidence 211111 11111111111111111 22333334444444444432 222
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhC---HHHH
Q 000853 450 SPEVGRFFRQFLLLFTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVC---PLTY 526 (1252)
Q Consensus 450 ~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~is---p~~y 526 (1252)
.++.......-+..+...+++...+..++....| -+.+..+.+.+++.++++... +++.-.+ --.|
T Consensus 775 a~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W---~lalv~la~~Pll~~~~~~~~--------~~~~~~~~~~~~~~ 843 (1228)
T KOG0055|consen 775 ASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGW---RLALVVLATFPLLILSGYLQK--------KFLKGFSKDDKKAY 843 (1228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHHH
Confidence 2222222222233333333222222222222111 111222333344444443321 0110000 0112
Q ss_pred HHHHHHHHhcCCCc---------------cccccCCcc--cccchhhhccCcccCCcchhHHHHHH--------------
Q 000853 527 GEIGLTVNEFLAPR---------------WEKITSGNT--TVGRQTLESRGLNFDSSFYWISIAAL-------------- 575 (1252)
Q Consensus 527 ~~~~l~~~e~~~~~---------------~~~~~~~~~--~~g~~~l~~~~~~~~~~~~w~~~~~l-------------- 575 (1252)
...+.+.+|...+- |........ ..-.......++.......+...++.
T Consensus 844 ~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~ 923 (1228)
T KOG0055|consen 844 EEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMT 923 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcC
Confidence 22222222222110 000000000 00000111111111111000000000
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCCCCCCCCccCCCCCc
Q 000853 576 -----IGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPL 650 (1252)
Q Consensus 576 -----~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (1252)
-.|.++......+.-.....|+..+...+..+.....++++..+.. ..++...+.-..
T Consensus 924 ~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~-----------------~~~~~~~~~~~G 986 (1228)
T KOG0055|consen 924 FEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD-----------------STSGGKLPNVKG 986 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC-----------------CCCCCcccccee
Confidence 0000011111111111122344444444444443333332211000 011112222344
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++||++.|+.++ +.++|+|+|++|++|+.+||+|||||||||.+.+|-..+. |..|.|.+||.++
T Consensus 987 ~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCccc
Confidence 699999999998653 5679999999999999999999999999999999999887 5699999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHH-------HcCCcccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQ-------TIELDGIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~-------~~~l~~~~~~~~g~~~ 800 (1252)
.. +.+|+++|.|.|+|.+| +-|++||+.|+. . +.+.++ +.++++ ..+|.+-.||.+|+.+
T Consensus 1055 k~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~--~---~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1055 KDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGS--E---EVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred ccCCHHHHHHhcceeccCchhh-cccHHHHHhccC--C---CCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 54 45788999999999986 579999999981 1 133332 223333 2367788899999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+||||||||++||||+++||+||+|||.||+||+++++.++++|++... |+|.|+++|+++ ..+.+|.++|+. +
T Consensus 1125 -~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~-gRT~IvIAHRLS--TIqnaD~I~Vi~-~ 1199 (1228)
T KOG0055|consen 1125 -VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME-GRTTIVIAHRLS--TIQNADVIAVLK-N 1199 (1228)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc-CCcEEEEecchh--hhhcCCEEEEEE-C
Confidence 58999999999999999999999999999999999999999999999864 899999999875 578999999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|+|++.|+.++
T Consensus 1200 G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1200 GKVVEQGTHDE 1210 (1228)
T ss_pred CEEEecccHHH
Confidence 99999999643
No 11
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-72 Score=688.00 Aligned_cols=545 Identities=30% Similarity=0.514 Sum_probs=453.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
++||||||||||||||++|+|+..+...++|+|.+||++.+....++.+|||+|+|.+++++||+|++.|.++++.+...
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~ 137 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSL 137 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCC
Confidence 58999999999999999999999875578999999998887777888999999999999999999999999998865321
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. +. +.+.++|+++++|||.+|+||+||+...||+||||||||+||..|+
T Consensus 138 ~-------~~------------------------~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell 186 (613)
T KOG0061|consen 138 S-------KE------------------------EKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 (613)
T ss_pred C-------HH------------------------HHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH
Confidence 0 01 1235689999999999999999999888999999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
.||+||+|||||||||+.++.++++.|+++|+. |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++
T Consensus 187 ~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~ 265 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSL 265 (613)
T ss_pred cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhC
Confidence 999999999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhcCch--hhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccccc
Q 000853 241 GFRCPERKGVADFLQEVISRK--DQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFKKY 318 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1252)
|++||++.||+||+.++.+.. ..+... ........+.++......+..+........ .. ......
T Consensus 266 G~~~P~~~Npadf~l~l~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~ 332 (613)
T KOG0061|consen 266 GFPCPELENPADFLLDLLSVDSGTRELEE--------AVRIAKLINKFSQTDNLKKTLEALEKSLST----SK-KVEIGT 332 (613)
T ss_pred CCCCCCcCChHHHHHHHHccCCCchhHHh--------HHHHHHHhhhccccchhhhhHHHHhhhccc----cc-cccccc
Confidence 999999999999999987743 110000 000000000000000000000000000000 00 000011
Q ss_pred cccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhH-HHHH
Q 000853 319 SLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGF-PELN 397 (1252)
Q Consensus 319 ~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~~~~ 397 (1252)
..++|.|+..+.+|.+....|++.....+.++..++++++|.+|++.+. +......+.|.+|+.+....+... ..+.
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~--~~~~~~~~~g~~~~~~~~~~f~~~~~~i~ 410 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN--DAKGIQNRLGLFFFILSFMTFLSMFGAVP 410 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6789999999999999999999999999999999999999999997643 333444777888877776655444 4678
Q ss_pred HhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 398 MTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAI 477 (1252)
Q Consensus 398 ~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~i 477 (1252)
....++++|.||+..++|+.++|++++.+.++|+.++.+++|..++|||+|+.++..+|+.++++.+...+.+.+++.++
T Consensus 411 ~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i 490 (613)
T KOG0061|consen 411 VFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFI 490 (613)
T ss_pred HhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccC---Ccccccch
Q 000853 478 ASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITS---GNTTVGRQ 554 (1252)
Q Consensus 478 ~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~---~~~~~g~~ 554 (1252)
++++++...+..+++++...+++++||+++.+.+|.||+|+.|+|..+|++++++.|||.+....+... .+...+..
T Consensus 491 ~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 570 (613)
T KOG0061|consen 491 SAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGED 570 (613)
T ss_pred HHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999998633333221 23455666
Q ss_pred hhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000853 555 TLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLK 594 (1252)
Q Consensus 555 ~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~ 594 (1252)
.+...++. ....|.++.++..+.++|.++.++++.+..
T Consensus 571 ~l~~~~~~--~~~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 571 VLKQLGFE--DSSFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHHhcCCc--ccccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666654 345799999999999999999999998754
No 12
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.3e-70 Score=682.53 Aligned_cols=550 Identities=28% Similarity=0.466 Sum_probs=456.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++++||+|||.|+++++.+...
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999999875456899999999876545567899999999999999999999999877543211
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCc-ccccCccccchhHHHHHH
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPM-RRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~-~rgLSGGqkqRvsiA~al 159 (1252)
.. + +.+.+++++++.+||.+++||.||+.. .+||||||||||+||++|
T Consensus 133 ~~---~----------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 133 TK---K----------------------------EKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred CH---H----------------------------HHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 00 0 012246889999999999999999853 688999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHh
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFED 239 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~ 239 (1252)
+++|+|++|||||||||+.++.++++.|+++++ .|+|+|+++|||+.++++.||++++|++|+++++|+++++.+||++
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999986 5899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCc---ccccccccc
Q 000853 240 CGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSE---THKKALSFK 316 (1252)
Q Consensus 240 ~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 316 (1252)
.|++||++.||+||+.++.+..+..+. ......++..+.++.+....+..+.......... .........
T Consensus 261 ~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (617)
T TIGR00955 261 LGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333 (617)
T ss_pred cCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccc
Confidence 999999999999999988764322110 0011123334444444333322222111100000 000011223
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhh-HHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNG-FPE 395 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~-~~~ 395 (1252)
.+..+++.|+..+.+|.+...+|++..+..+.+..+++++++|.+|++.+. +....+.+.|.+|+.++...+.. ...
T Consensus 334 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~~~g~lf~~~~~~~f~~~~~~ 411 (617)
T TIGR00955 334 GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL--TQKGVQNINGALFLFLTNMTFQNVFPV 411 (617)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999999997543 34456677888888877666654 355
Q ss_pred HHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 396 LNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFR 475 (1252)
Q Consensus 396 ~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~ 475 (1252)
......++++|+||+..++|++++|++++.+.++|..++.+++|..+.|||+|+.+++.+|+.++++.++..+++.+++.
T Consensus 412 ~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~ 491 (617)
T TIGR00955 412 INVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGY 491 (617)
T ss_pred HHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCcc-ccccCC----ccc
Q 000853 476 AIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRW-EKITSG----NTT 550 (1252)
Q Consensus 476 ~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~-~~~~~~----~~~ 550 (1252)
++++++++...+..++++++.++++++||+++...+|.||+|++|+||++|++++++.|||.+..+ +|...+ +..
T Consensus 492 ~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~ 571 (617)
T TIGR00955 492 LISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPS 571 (617)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999988765 332211 234
Q ss_pred ccchhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000853 551 VGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFL 593 (1252)
Q Consensus 551 ~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~ 593 (1252)
.|..+++.+|++.. +.|.++++++++.++|.++.++++++.
T Consensus 572 ~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 572 SGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred ChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888887654 469999999999999999999998864
No 13
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.8e-71 Score=695.21 Aligned_cols=718 Identities=20% Similarity=0.274 Sum_probs=407.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
++||+||.||||||||.+|.|+++.. +|+|.++| .++||+|+++ +.+.||||||.|+..
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pW-I~ngTvreNILFG~~------- 607 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPW-IQNGTVRENILFGSP------- 607 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccH-hhCCcHHHhhhcCcc-------
Confidence 47999999999999999999999864 99999998 5899999655 567899999999742
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
.|.++|.+++.+|++++|... |+++..|.|||. +-+||||||||++||||+|
T Consensus 608 -------------------~d~~rY~~Vi~aC~L~~Dle~--------Lp~GD~TeIGEr-GinLSGGQKqRIsLARAVY 659 (1381)
T KOG0054|consen 608 -------------------YDEERYDKVIKACALKKDLEI--------LPFGDLTEIGER-GINLSGGQKQRISLARAVY 659 (1381)
T ss_pred -------------------ccHHHHHHHHHHccCHhHHhh--------cCCCCcceecCC-ccCCcHhHHHHHHHHHHHh
Confidence 366899999999999998776 999999999992 3348999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
+++||++||+|.|++|+++.++|++..-... ..++|+|+.+| ..+.++.+|+|++|++|+|.+.|+++|+.+.-
T Consensus 660 ~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTH--ql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~--- 733 (1381)
T KOG0054|consen 660 QDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTH--QLQFLPHADQIIVLKDGKIVESGTYEELLKSG--- 733 (1381)
T ss_pred ccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeC--chhhhhhCCEEEEecCCeEecccCHHHHHhcc---
Confidence 9999999999999999999999998654322 34688888776 45889999999999999999999999987411
Q ss_pred CCCCCCCCChhHHHHHhcCch--hhhhh--hccCCCCCCCCCHHHHHHHHHhChhhH--HHHHHHhhccCCCcccccccc
Q 000853 241 GFRCPERKGVADFLQEVISRK--DQEQY--WHRKDHPYGYVSIDQFITKFKTSHLGL--KLEEELAHSFNKSETHKKALS 314 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~ 314 (1252)
.+|. +..... +.+.. ....+.+......+............. ...++.......++...+...
T Consensus 734 ----------~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~ 802 (1381)
T KOG0054|consen 734 ----------GDFA-ELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVS 802 (1381)
T ss_pred ----------hhHH-HHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEee
Confidence 0111 000000 00000 000000000000000000000000000 000000000000000000000
Q ss_pred cccccccHHHHHHHHHHHHHHHhhcChhHHH-HHHHHHHHHHHHhhhe-eccccCCcch------HhHHHHHHHHHHHHH
Q 000853 315 FKKYSLTKWELLKACATREFLLMKRNSFIYV-FKSTQLVIIASITMTA-FLRSQLAVDV------LHANAYLGALFYALM 386 (1252)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~-~~~~~~~~~~~~~g~~-f~~~~~~~~~------~~~~~~~g~lf~~~~ 386 (1252)
.+ -++.++++. ....... ............++.- |+..+.+... .....+.+ + |+++
T Consensus 803 ~~----vY~~Y~~a~---------~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~-v-Y~~l 867 (1381)
T KOG0054|consen 803 WS----VYKKYIKAA---------GGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLG-V-YALL 867 (1381)
T ss_pred HH----HHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHH-H-HHHH
Confidence 00 011111110 0000000 0011111111112221 2211111110 01111111 1 1111
Q ss_pred HH---HHhhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHH--
Q 000853 387 IL---IVNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFL-- 461 (1252)
Q Consensus 387 ~~---~~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l-- 461 (1252)
.. ++.....+.. ...--+..-.++-.++..++.+++.||-.. +.++++..+.
T Consensus 868 ~~~~~~~~~~rs~~~--------------------~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT---P~GRILNRFSkD 924 (1381)
T KOG0054|consen 868 GVASSLLTLLRSFLF--------------------AKGGLKASRKLHDKLLNSILRAPMSFFDTT---PTGRILNRFSKD 924 (1381)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhCcchhcCCC---Cccchhhhcccc
Confidence 10 0000000000 001112233455566666666666666432 3333333331
Q ss_pred -HHH------HHHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHH
Q 000853 462 -LLF------TVHLTSI------SLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGE 528 (1252)
Q Consensus 462 -~~~------~~~~~~~------~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~ 528 (1252)
..+ ....... +...+++...|.+.++.. .+.+++ |.-...|.-
T Consensus 925 ~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~------pl~v~~------------------~~~~~~Y~~ 980 (1381)
T KOG0054|consen 925 IDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAII------PLGVIY------------------YFVQRYYLA 980 (1381)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH------HHHHHH------------------HHHHHHHHH
Confidence 011 1111111 111111111111111111 111111 000111111
Q ss_pred HHHHHHhcCC----CccccccCCcccccchhhhccCc--------------------ccCCcchhHHHHHHH-HHHHHHH
Q 000853 529 IGLTVNEFLA----PRWEKITSGNTTVGRQTLESRGL--------------------NFDSSFYWISIAALI-GFTVLFN 583 (1252)
Q Consensus 529 ~~l~~~e~~~----~~~~~~~~~~~~~g~~~l~~~~~--------------------~~~~~~~w~~~~~l~-~~~~~~~ 583 (1252)
.+--.....+ +-+... +.+..|...+++++- .+..+..|.++..-+ +-.+++.
T Consensus 981 tsReLkRLesitRSPi~sh~--~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~ 1058 (1381)
T KOG0054|consen 981 TSRELKRLESITRSPIYSHF--SETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLI 1058 (1381)
T ss_pred HhHHHHHhhhcccchHHHhH--HHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 000000 012233333333321 111223355544321 1111111
Q ss_pred HHHHHHHHhc--CCCCC-------------------------cccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 584 VVFTLALTFL--KSPGK-------------------------SRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 584 ~~~~l~l~~~--~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
+.....+... ..++. ...+.+++|+.++.+.+.+.+ ...+...+++.
T Consensus 1059 ~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p------~~~~~~~pp~~ 1132 (1381)
T KOG0054|consen 1059 AALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP------LEIEESRPPPS 1132 (1381)
T ss_pred HHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC------CCCcCCCCCCC
Confidence 1111111111 11222 233445555555444322200 00111114567
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
||..| .++|+|++.+|... -..+|||||++|+|||++||+|++|||||||+++|.+...
T Consensus 1133 WP~~G---------~I~f~~~~~RYrp~-----------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e- 1191 (1381)
T KOG0054|consen 1133 WPSKG---------EIEFEDLSLRYRPN-----------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE- 1191 (1381)
T ss_pred CCCCC---------eEEEEEeEEEeCCC-----------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC-
Confidence 88776 48999998877432 2469999999999999999999999999999999999876
Q ss_pred CeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc
Q 000853 717 GIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY 793 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 793 (1252)
+.+|+|.|||.++.. ++.|++++.+||||.+|. -|+|.|| ++..+..++.++++|+..+|.+...
T Consensus 1192 -~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~ 1259 (1381)
T KOG0054|consen 1192 -PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVS 1259 (1381)
T ss_pred -ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHh
Confidence 468999999999764 578999999999998864 4777776 3444556677999999998875543
Q ss_pred -------ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Q 000853 794 -------SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866 (1252)
Q Consensus 794 -------~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 866 (1252)
..+. +++.++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+-.+ ++|||++.|+.+
T Consensus 1260 ~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~-- 1335 (1381)
T KOG0054|consen 1260 SLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN-- 1335 (1381)
T ss_pred hCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--
Confidence 3332 34579999999999999999999999999999999999999999999999775 899999999975
Q ss_pred HHHHhcceeeeecCcEEEEecCCCCc
Q 000853 867 IFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 867 ~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
....+|+|+||++ |+++++|+|.+.
T Consensus 1336 TVmd~DrVlVld~-G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1336 TVMDSDRVLVLDA-GRVVEFDSPAEL 1360 (1381)
T ss_pred hhhhcCeEEEeeC-CeEeecCChHHH
Confidence 4567999999985 999999998654
No 14
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.5e-69 Score=667.27 Aligned_cols=546 Identities=23% Similarity=0.354 Sum_probs=433.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+|||||||||||++|+|+.+|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+...
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~ 173 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL 173 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC
Confidence 47999999999999999999998874 3589999999987543 234689999999999999999999998765422100
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. ++ +.+.+++++++.+||+++.||.+|+...++|||||||||+||++|+
T Consensus 174 --~-~~----------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 174 --T-KQ----------------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred --C-HH----------------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 0 00 0112357899999999999999998888999999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHhc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFEDC 240 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~~ 240 (1252)
++|+||+|||||+|||+.++.++.+.|+++++ .|+|+++++|||+.++.+.||+|++|++|++++.|+++++.+||+++
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHC
Confidence 99999999999999999999999999999986 58999999999998999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhh--ccCCCcc-----cccc-
Q 000853 241 GFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAH--SFNKSET-----HKKA- 312 (1252)
Q Consensus 241 G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~-----~~~~- 312 (1252)
||+||.+.||+||+.++.+...........+. ....+...+.|+... ..+....... ....... ....
T Consensus 302 G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (659)
T PLN03211 302 GFSPSFPMNPADFLLDLANGVCQTDGVSEREK---PNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEH 377 (659)
T ss_pred CCCCCCCCCHHHHHHHHcCccccCCCcccccc---chHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhccccccc
Confidence 99999999999999999875432100000000 001122223332211 1110000000 0000000 0000
Q ss_pred -cccccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHH-H
Q 000853 313 -LSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILI-V 390 (1252)
Q Consensus 313 -~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~-~ 390 (1252)
.....+..++|+|+..+.+|.+.. +|++.....+.++.+++++++|++|++.+ ..+.+.+.|++|+++++.. .
T Consensus 378 ~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~~~~ 452 (659)
T PLN03211 378 RSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFWGVF 452 (659)
T ss_pred ccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHH
Confidence 011124467899999999999888 67777778999999999999999999653 3456788899998876654 4
Q ss_pred hhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHH
Q 000853 391 NGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTS 470 (1252)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~ 470 (1252)
..+..+..++.++++|+|||..++|++++|++++.+.++|+.++.+++|..++|||+|+.+++++|+.++++.++..+++
T Consensus 453 ~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~ 532 (659)
T PLN03211 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVS 532 (659)
T ss_pred HHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 55677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCcc-----cccc
Q 000853 471 ISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRW-----EKIT 545 (1252)
Q Consensus 471 ~~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~-----~~~~ 545 (1252)
.+++.++++++++...+..++++++.++++++||+++ .+|.||+|++|+||++|++++++.|||.+.+. +|..
T Consensus 533 ~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~ 610 (659)
T PLN03211 533 QGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSL 610 (659)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCC
Confidence 9999999999999999999999999999999999997 79999999999999999999999999976432 2321
Q ss_pred CCc-ccccchhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000853 546 SGN-TTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFL 593 (1252)
Q Consensus 546 ~~~-~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~ 593 (1252)
... ...+..++....+. ....|.++.+++++.+++.++.+++++..
T Consensus 611 ~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 611 PHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred cccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 110 01111122222222 23578999999999999999999988754
No 15
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.9e-69 Score=705.27 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=188.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++.++. +++.+|+||||+|++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 4889999877631 12569999999999999999999999999999999999887 4589999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
.. ...++.+|||||++.+++.+||+|++.+.++++.. ..++.++.++++++.++|.+..++.+ ++|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~---~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV---PAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 23456799999999999999999999998877642 23344567889999999998887764 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...||++++|. +|+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999975 6777899999997 599999999
Q ss_pred CC
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
+.
T Consensus 2154 ~q 2155 (2272)
T TIGR01257 2154 IQ 2155 (2272)
T ss_pred HH
Confidence 74
No 16
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-67 Score=707.33 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+||+++|+. +.+.+|+|+||+|+|||++||+||||||||||+++|.|.++ +.+|+|.+||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 5899999998842 12359999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. .++|+.+++|||++.++.. |++|||.++. +.+ ++.++++++..++.+ ..|+.+|..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 53 4678899999999988764 9999997531 122 345777788777643 346666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++..+ ++|||+++|+++ ....||++++|. +
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~--tI~~~DrIlVLd-~ 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLN--TIIDCDRILVLD-A 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChH--HHHhCCEEEEEE-C
Confidence 368999999999999999999999999999999999999999999999864 899999999864 567899999997 5
Q ss_pred cEEEEecCCCCc
Q 000853 881 GRIIYSGPLGQH 892 (1252)
Q Consensus 881 G~~~~~g~~~~~ 892 (1252)
|++++.|++++.
T Consensus 1448 G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1448 GRVVEFDTPENL 1459 (1622)
T ss_pred CEEEEeCCHHHH
Confidence 999999998654
No 17
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.9e-67 Score=703.60 Aligned_cols=212 Identities=19% Similarity=0.268 Sum_probs=179.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+|++++|+. +.+.+|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5899999998842 12469999999999999999999999999999999999887 5589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. .++|+.++||||++.++. -|++|||.+.. +.+ ++.++++++..++.+ ..|+.+|..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 53 567889999999998876 49999996431 122 345777888777754 345666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+++++.|++.|++..+ ++|+|+++|+++ ....+|++++|+ +
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~~TvI~IAHRl~--ti~~~DrIlVL~-~ 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK-SCTMLVIAHRLN--TIIDCDKILVLS-S 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHH--HHHhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999999754 899999999864 567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|++++
T Consensus 1445 G~ivE~Gt~~e 1455 (1495)
T PLN03232 1445 GQVLEYDSPQE 1455 (1495)
T ss_pred CEEEEECCHHH
Confidence 99999999854
No 18
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.7e-64 Score=678.03 Aligned_cols=213 Identities=19% Similarity=0.213 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+|++++|+.. ...+|+||||+|+|||++||+|+||||||||+++|.|.++ +.+|+|.+||.|+
T Consensus 1284 ~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 58999999988532 2359999999999999999999999999999999999887 4589999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+|+.+++|||++.++.. |++|||.... +.+ ++.++++++..++.+ ..|+.+|..
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 54 4678899999999988765 9999996211 122 344777888887754 346666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++..+ ++|||+++|++ +....+|++++|+ +
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~-~~TvI~IAHRl--~ti~~~DrIlVld-~ 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE-DCTVLTIAHRL--NTIMDYTRVIVLD-K 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH--HHHHhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999998754 89999999986 4567899999997 5
Q ss_pred cEEEEecCCCCc
Q 000853 881 GRIIYSGPLGQH 892 (1252)
Q Consensus 881 G~~~~~g~~~~~ 892 (1252)
|++++.|++++.
T Consensus 1495 G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1495 GEVAEFGAPSNL 1506 (1522)
T ss_pred CEEEEECCHHHH
Confidence 999999998653
No 19
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.6e-64 Score=664.19 Aligned_cols=218 Identities=21% Similarity=0.336 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-------------
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG------------- 717 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~------------- 717 (1252)
.++|+||+|.|+.. +++++|+|+||+|+||+++||+||||||||||+++|.|.+.+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 59999999988532 1246999999999999999999999999999999999987751
Q ss_pred ---------------------------------------eEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHH
Q 000853 718 ---------------------------------------IIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 718 ---------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
+.+|+|++||.++.. ..+|+.+|||+|++.+| +.|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 148999999998643 56788999999999886 68999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIEL-------DGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlD 828 (1252)
|||.|+. ++.++ +.++++++..++ .+..|+.+|..+ .+||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 22233 335666665554 445688888654 679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHHhcceeeeecC---cE-EEEecCCCC
Q 000853 829 EPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNG---GR-IIYSGPLGQ 891 (1252)
Q Consensus 829 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~---G~-~~~~g~~~~ 891 (1252)
||||+||+++++.|++.|+++. .+++|+|+++|++ +..+.+|++++|.++ |+ +++.|+.++
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 9999999999999999999986 3589999999986 457889999999862 77 458998644
No 20
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-63 Score=575.12 Aligned_cols=460 Identities=27% Similarity=0.323 Sum_probs=346.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeEEEEECCccCCCccc-------cceEEEecccc--ccCCCCCHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHS-LKVSGEVSYNGYRLDEFVP-------QKTSAYISQYD--LHIAEMTVRETIDF 70 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~-~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTV~e~l~f 70 (1252)
+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++ .|-|-+||.+-|.=
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 47999999999999999999999875 3468999999987644322 36799999986 46777899998875
Q ss_pred HHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCcccc
Q 000853 71 SARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQK 150 (1252)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqk 150 (1252)
..+.+.... .+ +...++.++|+..||++.... +.....||||||
T Consensus 117 ~~~~h~~~~----~~-----------------------------ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~r 160 (539)
T COG1123 117 ALRLHGKGS----RA-----------------------------EARKRAVELLEQVGLPDPERR---DRYPHQLSGGMR 160 (539)
T ss_pred HHHHhcccc----HH-----------------------------HHHHHHHHHHHHcCCCChhhh---ccCCcccCchHH
Confidence 544332110 00 112345778999999987655 233456999999
Q ss_pred chhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 151 KRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
|||.||+||+.+|++|++||||++||+.++.+|.+.|+++.++.|.++ +.++|...-+.++||||+||.+|++++.|+.
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~-l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAV-LFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEE-EEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999998766555 4567778888899999999999999999998
Q ss_pred chHHHHHHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccc
Q 000853 231 SYICKFFEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHK 310 (1252)
Q Consensus 231 ~~~~~~f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 310 (1252)
+++.+.+ .++
T Consensus 240 ~~i~~~p---------------------------------~hp------------------------------------- 249 (539)
T COG1123 240 EEILSNP---------------------------------QHP------------------------------------- 249 (539)
T ss_pred HHHHhcc---------------------------------CCc-------------------------------------
Confidence 7764310 000
Q ss_pred cccccccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHH
Q 000853 311 KALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIV 390 (1252)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~ 390 (1252)
|... + .
T Consensus 250 -------YT~~----L--------l------------------------------------------------------- 255 (539)
T COG1123 250 -------YTRG----L--------L------------------------------------------------------- 255 (539)
T ss_pred -------ccHH----H--------H-------------------------------------------------------
Confidence 0000 0 0
Q ss_pred hhHHHHHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHH
Q 000853 391 NGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTS 470 (1252)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~ 470 (1252)
.+
T Consensus 256 ~a------------------------------------------------------------------------------ 257 (539)
T COG1123 256 AA------------------------------------------------------------------------------ 257 (539)
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCccc
Q 000853 471 ISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTT 550 (1252)
Q Consensus 471 ~~~~~~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~ 550 (1252)
.|. ..
T Consensus 258 ----------------------------------------~p~-----------------------~~------------ 262 (539)
T COG1123 258 ----------------------------------------VPR-----------------------LG------------ 262 (539)
T ss_pred ----------------------------------------CCC-----------------------cc------------
Confidence 000 00
Q ss_pred ccchhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccC
Q 000853 551 VGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDA 630 (1252)
Q Consensus 551 ~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1252)
.... ..... ..
T Consensus 263 --------------------------------------------------------------~~~~-----~~~~~--~~ 273 (539)
T COG1123 263 --------------------------------------------------------------DEKI-----IRLPR--RG 273 (539)
T ss_pred --------------------------------------------------------------cccc-----ccccc--cc
Confidence 0000 00000 00
Q ss_pred CCCCCCCCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHH
Q 000853 631 PLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVL 710 (1252)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l 710 (1252)
+.. ...-++.+|++..+..+..+. ....+...+++||||++++||++||+|+||||||||.++|
T Consensus 274 -------~~~-------~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i 337 (539)
T COG1123 274 -------PLR-------AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARIL 337 (539)
T ss_pred -------ccc-------cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHH
Confidence 000 112477888887776543211 0012346799999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEEEECCeeC--Cc---ccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 000853 711 SGRKTGGIIEGDIRIGGYPK--VQ---HTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783 (1252)
Q Consensus 711 ~g~~~~~~~~G~i~~~g~~~--~~---~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l 783 (1252)
+|+.+| .+|+|.++|.+. .. ...++.+-+++||+ .+.|.+||++.+.-....... ....++++++.+++
T Consensus 338 ~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll 413 (539)
T COG1123 338 AGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELL 413 (539)
T ss_pred hCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHH
Confidence 999884 689999999762 11 23456778888887 567999999999877654432 22456677899999
Q ss_pred HHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEec
Q 000853 784 QTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIH 861 (1252)
Q Consensus 784 ~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H 861 (1252)
+.++|... .+ ..+++||||||||++|||||+.+|++|++|||||.||+..+.++.+.|+++.++ |.|.|++||
T Consensus 414 ~~VgL~~~~l~-----ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISH 488 (539)
T COG1123 414 ELVGLPPEFLD-----RYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488 (539)
T ss_pred HHcCCCHHHHh-----cCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 99999852 33 346899999999999999999999999999999999999999999999999866 999999999
Q ss_pred CCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 862 QPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 862 ~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|.+ -+...||++++|. +|++|+.||.+
T Consensus 489 Dl~-vV~~i~drv~vm~-~G~iVE~G~~~ 515 (539)
T COG1123 489 DLA-VVRYIADRVAVMY-DGRIVEEGPTE 515 (539)
T ss_pred CHH-HHHhhCceEEEEE-CCeEEEeCCHH
Confidence 975 3667789999997 59999999853
No 21
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=9.6e-63 Score=660.34 Aligned_cols=213 Identities=23% Similarity=0.247 Sum_probs=180.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|.++ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 36999999998843 12359999999999999999999999999999999999887 558999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-------KYSLVGLP 799 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~ 799 (1252)
+.. .++|+.++||||++.++. -|++|||... .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 653 467889999999998876 4999999531 1222 3457888888887653 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~-p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++..+ ++|||+++|++ +....||++++|.
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccH--HHHHhCCEEEEEE
Confidence 468999999999999999996 899999999999999999999999998754 79999999986 5678899999997
Q ss_pred cCcEEEEecCCCC
Q 000853 879 NGGRIIYSGPLGQ 891 (1252)
Q Consensus 879 ~~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 1519 -~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1519 -HGAVAEMGSPRE 1530 (1560)
T ss_pred -CCEEEEECCHHH
Confidence 599999999754
No 22
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.5e-62 Score=651.11 Aligned_cols=212 Identities=18% Similarity=0.260 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++|+||+++|+.. .+.+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.+||.++
T Consensus 1217 ~I~f~nVs~~Y~~~-----------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA-----------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCCC-----------CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 58999999988531 2469999999999999999999999999999999999875 379999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+|+.++|+||++.++.. |+||||.... .. .++.++++++.++|.+ ..|+.+|..
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~- 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG- 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC-
Confidence 53 4578899999999988764 9999995321 11 2456888999888754 346666653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++..+ ++|||+++|++ +....||++++|. +
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl--~ti~~~DrIlvL~-~ 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRV--EALLECQQFLVIE-G 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH--HHHHhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999999764 79999999986 4567899999997 5
Q ss_pred cEEEEecCCCCc
Q 000853 881 GRIIYSGPLGQH 892 (1252)
Q Consensus 881 G~~~~~g~~~~~ 892 (1252)
|++++.|++.+.
T Consensus 1427 G~ivE~g~p~~L 1438 (1490)
T TIGR01271 1427 SSVKQYDSIQKL 1438 (1490)
T ss_pred CEEEEeCCHHHH
Confidence 999999998543
No 23
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-63 Score=603.72 Aligned_cols=446 Identities=22% Similarity=0.335 Sum_probs=334.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ ..+|+|.++|.++..... ++.++||+|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 111 (506)
T PRK13549 33 IVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP 111 (506)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence 47899999999999999999999861 138999999998754322 3568999999888999999999988643210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
... .. .++ ...+++++++.+||++..++.+++ |||||||||+||
T Consensus 112 ~~~-~~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqrv~la 155 (506)
T PRK13549 112 GGI-MD-YDA-----------------------------MYLRAQKLLAQLKLDINPATPVGN-----LGLGQQQLVEIA 155 (506)
T ss_pred cCC-cC-HHH-----------------------------HHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHH
Confidence 000 00 000 012357789999998888888876 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
+||+.+|+||||||||+|||+.++.++.+.|+++++ .+.++|++ +|...++...||+|++|++|++++.|+.++...
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~- 232 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYI-SHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE- 232 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCcHHHHHHhcCEEEEEECCEEeeecccccCCH-
Confidence 999999999999999999999999999999999864 46666654 566678888999999999999998885332100
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
....+.+
T Consensus 233 -------------------------------------------~~~~~~~------------------------------ 239 (506)
T PRK13549 233 -------------------------------------------DDIITMM------------------------------ 239 (506)
T ss_pred -------------------------------------------HHHHHHh------------------------------
Confidence 0000000
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
. ..
T Consensus 240 ----------------------------------------------~--~~----------------------------- 242 (506)
T PRK13549 240 ----------------------------------------------V--GR----------------------------- 242 (506)
T ss_pred ----------------------------------------------h--Cc-----------------------------
Confidence 0 00
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
T Consensus 243 -------------------------------------------------------------------------------- 242 (506)
T PRK13549 243 -------------------------------------------------------------------------------- 242 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
. .
T Consensus 243 ------------------------------~---~--------------------------------------------- 244 (506)
T PRK13549 243 ------------------------------E---L--------------------------------------------- 244 (506)
T ss_pred ------------------------------C---c---------------------------------------------
Confidence 0 0
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
.. .. + .. +
T Consensus 245 -------------------------------------------------~~-----~~----~----~~-----~----- 252 (506)
T PRK13549 245 -------------------------------------------------TA-----LY----P----RE-----P----- 252 (506)
T ss_pred -------------------------------------------------cc-----cc----c----cc-----c-----
Confidence 00 00 0 00 0
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
+..+ ...++++|+++.++. .+++.+|+|+||+|++||++||+||||||||||+|+|+|..++
T Consensus 253 -~~~~-------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 253 -HTIG-------EVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred -cCCC-------CceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000 013667777654421 0124589999999999999999999999999999999998752
Q ss_pred CeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcC
Q 000853 717 GIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTIE 787 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~~tv~e~l~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~ 787 (1252)
+.+|+|.++|.++... ..++.++|++|++ .+++.+||.||+.+........ ....+..+++++++++.++
T Consensus 315 -~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 393 (506)
T PRK13549 315 -RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393 (506)
T ss_pred -CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcC
Confidence 2589999999875421 2345689999995 3677899999998753211100 0122334466889999999
Q ss_pred Cc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Q 000853 788 LD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866 (1252)
Q Consensus 788 l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 866 (1252)
+. +..++. +..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ +
T Consensus 394 l~~~~~~~~-----~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~ 467 (506)
T PRK13549 394 VKTASPELA-----IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-E 467 (506)
T ss_pred ccCCCcccc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-H
Confidence 96 455554 4689999999999999999999999999999999999999999999999888999999999975 5
Q ss_pred HHHHhcceeeeecCcEEEEecCCCCc
Q 000853 867 IFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 867 ~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
+.+.||++++|.+ |+++..|++++.
T Consensus 468 ~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 468 VLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred HHHhCCEEEEEEC-CEEEEEeccccC
Confidence 6778999999974 899999987654
No 24
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-62 Score=600.14 Aligned_cols=436 Identities=21% Similarity=0.325 Sum_probs=330.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 32 ~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 108 (501)
T PRK10762 32 VMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN 108 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence 47999999999999999999999987 999999998875322 13468999999889999999999988643210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
...... .. +.+.+++++++.+||++..+..+++ |||||||||+||
T Consensus 109 ~~~~~~-~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la 153 (501)
T PRK10762 109 RFGRID-WK-----------------------------KMYAEADKLLARLNLRFSSDKLVGE-----LSIGEQQMVEIA 153 (501)
T ss_pred ccCccC-HH-----------------------------HHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHH
Confidence 000000 00 0012356789999999888888877 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
+||+.+|++|||||||+|||+.++.++.+.|+++.. .+.++|+ ++|...++...||+|++|++|+++..|+.+++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii-~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVY-ISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE- 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH-
Confidence 999999999999999999999999999999999865 4666655 4566678889999999999999998775332100
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
+...+.+
T Consensus 231 -------------------------------------------~~~~~~~------------------------------ 237 (501)
T PRK10762 231 -------------------------------------------DSLIEMM------------------------------ 237 (501)
T ss_pred -------------------------------------------HHHHHHh------------------------------
Confidence 0000000
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
. .
T Consensus 238 ----------------------------------------------~--~------------------------------ 239 (501)
T PRK10762 238 ----------------------------------------------V--G------------------------------ 239 (501)
T ss_pred ----------------------------------------------c--C------------------------------
Confidence 0 0
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
.
T Consensus 240 --------------------------------------------------------------~----------------- 240 (501)
T PRK10762 240 --------------------------------------------------------------R----------------- 240 (501)
T ss_pred --------------------------------------------------------------C-----------------
Confidence 0
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
+.. ...+ .. +
T Consensus 241 --------------------------------------------------~~~---~~~~-------~~-----~----- 250 (501)
T PRK10762 241 --------------------------------------------------KLE---DQYP-------RL-----D----- 250 (501)
T ss_pred --------------------------------------------------Ccc---cccc-------cc-----c-----
Confidence 000 0000 00 0
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
.+ . .+..++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|..+
T Consensus 251 ~~-~-------~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~- 303 (501)
T PRK10762 251 KA-P-------GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP- 303 (501)
T ss_pred cC-C-------CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-
Confidence 00 0 011356666541 26999999999999999999999999999999999876
Q ss_pred CeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHccCC---CCCCHHHHHHHHHHHHHHc
Q 000853 717 GIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPNITVEESVIFSAWLRLS---PEIDLKTKAEFVNEVLQTI 786 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~~tv~e~l~~~~~l~~~---~~~~~~~~~~~~~~~l~~~ 786 (1252)
+.+|+|.++|.++... ..++.+||++|++ .+++.+||.||+.+....... .....++.+++++++++.+
T Consensus 304 -p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (501)
T PRK10762 304 -RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF 382 (501)
T ss_pred -CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc
Confidence 4589999999876421 2345689999996 467889999999875311100 0012233446688999999
Q ss_pred CCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Q 000853 787 ELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSI 865 (1252)
Q Consensus 787 ~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 865 (1252)
++. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 383 ~l~~~~~~~~-----~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~- 456 (501)
T PRK10762 383 NIKTPSMEQA-----IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP- 456 (501)
T ss_pred CCCCCCccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-
Confidence 995 555554 4689999999999999999999999999999999999999999999999877999999999975
Q ss_pred HHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 866 DIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 866 ~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
++.+.||++++|. +|++++.|++++.
T Consensus 457 ~~~~~~d~v~~l~-~G~i~~~~~~~~~ 482 (501)
T PRK10762 457 EVLGMSDRILVMH-EGRISGEFTREQA 482 (501)
T ss_pred HHHhhCCEEEEEE-CCEEEEEeccccC
Confidence 5677899999997 5899999987653
No 25
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-62 Score=610.17 Aligned_cols=228 Identities=21% Similarity=0.231 Sum_probs=183.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++..... .....+.+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 48899998877421000 0000012469999999999999999999999999999999999887 4589999999876
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000853 731 VQH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 801 (1252)
... .+++.++|++|++ .+++.+||.|++.+....+. ....++.++++.++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 421 2456799999997 47888999999988654331 112334456788999999995 444544 5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++ .+...+|++++|. +
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~-~ 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY-L 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 689999999999999999999999999999999999999999999999765 899999999975 5667899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|++++
T Consensus 540 G~iv~~g~~~~ 550 (623)
T PRK10261 540 GQIVEIGPRRA 550 (623)
T ss_pred CEEEEecCHHH
Confidence 89999998754
No 26
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-62 Score=600.87 Aligned_cols=443 Identities=19% Similarity=0.293 Sum_probs=330.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.++.....
T Consensus 33 ~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (510)
T PRK09700 33 IHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTK 109 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence 47999999999999999999999887 9999999988754322 2468999999889999999999987532100
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
........ +.+ +.+.+++++++.+||.+..++.+++ |||||||||+||
T Consensus 110 ~~~~~~~~----------------~~~-----------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~ia 157 (510)
T PRK09700 110 KVCGVNII----------------DWR-----------EMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIA 157 (510)
T ss_pred cccccccc----------------CHH-----------HHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHH
Confidence 00000000 000 0112357789999999888888876 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
+||+.+|+||||||||+|||+.++.++.+.|+++++ .+.|+|+ ++|...++...||++++|++|++++.|+++++..
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiii-vsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~- 234 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVY-ISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN- 234 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH-
Confidence 999999999999999999999999999999999875 4666655 4566778889999999999999998886433100
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
++..+ . .
T Consensus 235 -------------------------------------------~~~~~-------------~---~-------------- 241 (510)
T PRK09700 235 -------------------------------------------DDIVR-------------L---M-------------- 241 (510)
T ss_pred -------------------------------------------HHHHH-------------H---h--------------
Confidence 00000 0 0
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
. .. .
T Consensus 242 ----------------------------------------------~--~~--~-------------------------- 245 (510)
T PRK09700 242 ----------------------------------------------V--GR--E-------------------------- 245 (510)
T ss_pred ----------------------------------------------c--CC--C--------------------------
Confidence 0 00 0
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK09700 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
.
T Consensus 246 ----------------------------------~--------------------------------------------- 246 (510)
T PRK09700 246 ----------------------------------L--------------------------------------------- 246 (510)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
.. ... .... .. .
T Consensus 247 ----------------------------------------------~~--~~~---~~~~-------~~----------~ 258 (510)
T PRK09700 247 ----------------------------------------------QN--RFN---AMKE-------NV----------S 258 (510)
T ss_pred ----------------------------------------------cc--ccc---cccc-------cc----------c
Confidence 00 000 0000 00 0
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
.+ . .+..++++|+++.+ +.+|+|+||+|++||+++|+||||||||||+++|+|..+
T Consensus 259 ~~-~-------~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~- 314 (510)
T PRK09700 259 NL-A-------HETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK- 314 (510)
T ss_pred cC-C-------CCcEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-
Confidence 00 0 01136777776421 138999999999999999999999999999999999876
Q ss_pred CeEEEEEEECCeeCCcc----cccceEEEEccC---CCCCCCCCHHHHHHHHHHcc---CCC--C-CCHHHHHHHHHHHH
Q 000853 717 GIIEGDIRIGGYPKVQH----TFARISGYCEQN---DIHSPNITVEESVIFSAWLR---LSP--E-IDLKTKAEFVNEVL 783 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~~tv~e~l~~~~~l~---~~~--~-~~~~~~~~~~~~~l 783 (1252)
+.+|+|.++|.++... ..++.+||++|+ ..+++.+||.||+.+....+ ... . ...+..++++++++
T Consensus 315 -p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 393 (510)
T PRK09700 315 -RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQR 393 (510)
T ss_pred -CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHH
Confidence 4589999999875421 234568999998 35778899999998753211 000 0 11223335678999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Q 000853 784 QTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862 (1252)
Q Consensus 784 ~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 862 (1252)
+.+++. +..++. +..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+
T Consensus 394 ~~~~l~~~~~~~~-----~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd 468 (510)
T PRK09700 394 ELLALKCHSVNQN-----ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468 (510)
T ss_pred HhcCCCCCCccCc-----cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 999996 566655 46899999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 863 PSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 863 ~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
++ ++...||++++|.+ |++++.++.
T Consensus 469 ~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 469 LP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 75 56778999999975 899988875
No 27
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.1e-62 Score=599.51 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEEC-Cee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG-GYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~ 729 (1252)
.++++|+++.++.. ..+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCc
Confidence 37788888766320 0112469999999999999999999999999999999999876 458999996 532
Q ss_pred ---CCc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-----ccccc
Q 000853 730 ---KVQ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-----IKYSL 795 (1252)
Q Consensus 730 ---~~~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~ 795 (1252)
... ...++.+||++|++.+++.+||.||+.+...+. ...+..++++.++++.++|.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 123456899999988888999999998764321 122334466889999999975 23433
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcce
Q 000853 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 796 ~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
+.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 425 -----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 -----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 5689999999999999999999999999999999999999999999999765 899999999975 566789999
Q ss_pred eeeecCcEEEEecCC
Q 000853 875 ILMKNGGRIIYSGPL 889 (1252)
Q Consensus 875 ~~l~~~G~~~~~g~~ 889 (1252)
++|. +|++++.|++
T Consensus 499 ~~l~-~G~i~~~g~~ 512 (520)
T TIGR03269 499 ALMR-DGKIVKIGDP 512 (520)
T ss_pred EEEE-CCEEEEECCH
Confidence 9997 5899999876
No 28
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6e-62 Score=594.70 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=168.0
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCC
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPN 751 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 751 (1252)
+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5899999999999999999999999999999999876 4589999999876432 1245689999984 47788
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 752 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
+|+.|++......+..........++.++++++.+++. +..++. ++.|||||||||+||++|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986431111000011222345688999999996 556655 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 831 TSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
|+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|. +|++++.|.+++.
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~~ 490 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAAI 490 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEccccC
Confidence 9999999999999999999878999999999976 5777899999997 5899999987653
No 29
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.6e-62 Score=596.86 Aligned_cols=203 Identities=23% Similarity=0.325 Sum_probs=169.6
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCC--CC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQND--IH 748 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~ 748 (1252)
+.+|+|+||+|++||++||+||||||||||+|+|+|..+ .+|+|.++|.++... .+++.++|++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999863 479999999875321 1345689999997 36
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000853 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827 (1252)
Q Consensus 749 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illl 827 (1252)
++.+||.||+.+....+.. .....+.++++.++++.+++. +..+.. +.+|||||||||+|||+|+.+|++|||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999987543211 122334456788999999996 345544 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 828 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
||||+|||+.+++.+++.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 511 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDCE 511 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999865 899999999975 46678999999974 8999999863
No 30
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.6e-61 Score=590.09 Aligned_cols=222 Identities=18% Similarity=0.333 Sum_probs=177.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+.. .+++.+|+|+||+|++||+++|+||||||||||+++|+|..++ +.+|+|.++|.++.
T Consensus 258 l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 258 LEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVD 326 (500)
T ss_pred EEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECC
Confidence 677777654310 0124589999999999999999999999999999999998763 24899999998764
Q ss_pred c----ccccceEEEEccCC---CCCCCCCHHHHHHHHHH--ccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000853 732 Q----HTFARISGYCEQND---IHSPNITVEESVIFSAW--LRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGV 801 (1252)
Q Consensus 732 ~----~~~~~~~~~v~q~~---~~~~~~tv~e~l~~~~~--l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 801 (1252)
. ...++.+||++|++ .+++.+||+||+.+... ............++.++++++.+++.+ ..++. +
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 401 (500)
T TIGR02633 327 IRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----I 401 (500)
T ss_pred CCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----c
Confidence 2 12356789999995 47888999999987531 111001122334466889999999964 44554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|. +|
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~-~G 479 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIG-EG 479 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CC
Confidence 689999999999999999999999999999999999999999999999888999999999975 5777899999997 48
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
+++..++..+
T Consensus 480 ~i~~~~~~~~ 489 (500)
T TIGR02633 480 KLKGDFVNHA 489 (500)
T ss_pred EEEEEEcccc
Confidence 9998887543
No 31
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-61 Score=590.21 Aligned_cols=206 Identities=21% Similarity=0.330 Sum_probs=170.8
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc----ccccceEEEEccCC---CCCC
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ----HTFARISGYCEQND---IHSP 750 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~ 750 (1252)
.+++|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 38999999999999999999999999999999999876 458999999987532 12345789999996 3778
Q ss_pred CCCHHHHHHHHHHccCCC-C--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000853 751 NITVEESVIFSAWLRLSP-E--IDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 826 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~-~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~ill 826 (1252)
.+|+.||+.+........ . ......++.++++++.+++. +..++. +..|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccCCHHHHHHHHHHHHHccCCCEEE
Confidence 899999998753211100 0 11223345688999999994 556655 46899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.+|++++|. +|++++.|++++.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccC
Confidence 99999999999999999999999888999999999975 5778899999997 5899999988654
No 32
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-60 Score=579.21 Aligned_cols=437 Identities=17% Similarity=0.267 Sum_probs=325.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++....
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~- 101 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPT- 101 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccc-
Confidence 47999999999999999999999887 999999998875432 1356899999988899999999998753100
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.+.... .++ ...+++++++.+|+.+..++.+++ |||||||||+||
T Consensus 102 ~~~~~~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lA 146 (491)
T PRK10982 102 KGMFVD-QDK-----------------------------MYRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIA 146 (491)
T ss_pred cccccC-HHH-----------------------------HHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHH
Confidence 000000 000 012356788999998878888776 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.++|++ +|...++...||+|++|++|+++..|+.++...
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 223 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYI-SHKMEEIFQLCDEITILRDGQWIATQPLAGLTM- 223 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEeecChhhCCH-
Confidence 999999999999999999999999999999999865 46666554 566678889999999999999998875322100
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
++..+ ..
T Consensus 224 -------------------------------------------~~~~~-------------~~----------------- 230 (491)
T PRK10982 224 -------------------------------------------DKIIA-------------MM----------------- 230 (491)
T ss_pred -------------------------------------------HHHHH-------------HH-----------------
Confidence 00000 00
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
. .
T Consensus 231 ----------------------------------------------~--~------------------------------ 232 (491)
T PRK10982 231 ----------------------------------------------V--G------------------------------ 232 (491)
T ss_pred ----------------------------------------------h--C------------------------------
Confidence 0 0
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
T Consensus 233 -------------------------------------------------------------------------------- 232 (491)
T PRK10982 233 -------------------------------------------------------------------------------- 232 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
. ..
T Consensus 233 -------------------------------~-~~--------------------------------------------- 235 (491)
T PRK10982 233 -------------------------------R-SL--------------------------------------------- 235 (491)
T ss_pred -------------------------------C-Cc---------------------------------------------
Confidence 0 00
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
.. .. . ... .
T Consensus 236 -------------------------------------------------~~-----~~-~-------~~~---------~ 244 (491)
T PRK10982 236 -------------------------------------------------TQ-----RF-P-------DKE---------N 244 (491)
T ss_pred -------------------------------------------------cc-----cc-c-------ccc---------C
Confidence 00 00 0 000 0
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
+ . .+..++++|+++. .+.+|+|+||++++||++||+||||||||||+++|+|..+
T Consensus 245 -~-~-------~~~~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~- 299 (491)
T PRK10982 245 -K-P-------GEVILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE- 299 (491)
T ss_pred -C-C-------CCcEEEEeCcccc---------------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-
Confidence 0 0 0113677777653 1248999999999999999999999999999999999877
Q ss_pred CeEEEEEEECCeeCCcc----cccceEEEEccCCC---CCCCCCHHHHHHHHH--HccCCCC-CCHHHHHHHHHHHHHHc
Q 000853 717 GIIEGDIRIGGYPKVQH----TFARISGYCEQNDI---HSPNITVEESVIFSA--WLRLSPE-IDLKTKAEFVNEVLQTI 786 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~---~~~~~tv~e~l~~~~--~l~~~~~-~~~~~~~~~~~~~l~~~ 786 (1252)
+.+|+|.++|.++... ..++.++|++|++. +++.+|+.+|..+.. ....... ......++.+.++++.+
T Consensus 300 -p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (491)
T PRK10982 300 -KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM 378 (491)
T ss_pred -CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhc
Confidence 4589999999876432 12455899999853 567888877743221 0000001 11223345678899999
Q ss_pred CCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Q 000853 787 ELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSI 865 (1252)
Q Consensus 787 ~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 865 (1252)
++. +..++. +.+|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++
T Consensus 379 ~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~- 452 (491)
T PRK10982 379 RVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP- 452 (491)
T ss_pred CccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-
Confidence 985 344444 5689999999999999999999999999999999999999999999999888999999999975
Q ss_pred HHHHHhcceeeeecCcEEEEecCCCC
Q 000853 866 DIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 866 ~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
++...||++++|.+ |+++..++..+
T Consensus 453 ~~~~~~d~v~~l~~-g~i~~~~~~~~ 477 (491)
T PRK10982 453 ELLGITDRILVMSN-GLVAGIVDTKT 477 (491)
T ss_pred HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 57788999999974 89998876643
No 33
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-59 Score=571.68 Aligned_cols=215 Identities=19% Similarity=0.295 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 478899887652 24589999999999999999999999999999999997542 1489999999764
Q ss_pred Cc----ccccceEEEEccCCCCCC--CCCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000853 731 VQ----HTFARISGYCEQNDIHSP--NITVEESVIFSAWL--RLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~----~~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 801 (1252)
.. ...++.+||++|++.+++ ..|+++++.+.... ....... +..+++++++++.++|.+ ..++. +
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~ 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----F 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----h
Confidence 22 123567899999875543 35777776543210 0101111 223456889999999986 55554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCCHHHHH-Hhcceeeeec
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG-RTVVCTIHQPSIDIFE-AFDDLILMKN 879 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~~~~l~~ 879 (1252)
.+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++++ .|||++||+++ ++.+ .+|++++|.
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~- 477 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVP- 477 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEec-
Confidence 6899999999999999999999999999999999999999999999998765 47999999975 4545 468888886
Q ss_pred CcEEEEec
Q 000853 880 GGRIIYSG 887 (1252)
Q Consensus 880 ~G~~~~~g 887 (1252)
+|++++.-
T Consensus 478 ~G~i~~~~ 485 (490)
T PRK10938 478 DGDIYRYV 485 (490)
T ss_pred CCceEEee
Confidence 47877654
No 34
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.6e-57 Score=557.73 Aligned_cols=202 Identities=21% Similarity=0.305 Sum_probs=164.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999987652 2469999999999999999999999999999999999877 45899999542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSgGq 808 (1252)
..+||++|++ .+++.+||.|++.+....+.. ... .+...++++.+++.+ ..+.. +.+|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999996 677889999999886432211 111 123457899999964 34444 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-Eec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g 887 (1252)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .|||++||+++ .+...||++++|.++|++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 48999999975 5667899999997667776 555
Q ss_pred CC
Q 000853 888 PL 889 (1252)
Q Consensus 888 ~~ 889 (1252)
+.
T Consensus 527 ~~ 528 (556)
T PRK11819 527 NF 528 (556)
T ss_pred CH
Confidence 53
No 35
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-56 Score=482.73 Aligned_cols=229 Identities=26% Similarity=0.367 Sum_probs=190.2
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
+.++.+|++..++.+..+-.. ......++++||+++++||.+||+|.||||||||-.+|.++.++ +|+|.++|.+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred ceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 346777777666654322111 12235699999999999999999999999999999999998763 5999999998
Q ss_pred CCc------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 730 KVQ------HTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 730 ~~~------~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
+.. ...|+.+-.|+||| .+.|.+||.|-+.-+.....+ ..+..++++++.++|+.+||+..... ..+
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~----RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRN----RYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhh----cCC
Confidence 753 23577889999998 467899999999888766643 56788899999999999999865322 236
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
+++|||||||++||||++.+|++++||||||.||-.-+.+|+++|+++.++ |.+-+++|||.. -+-.+||+++||. +
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~ 502 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-D 502 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-C
Confidence 899999999999999999999999999999999999999999999999754 999999999974 3567789999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|+||+.||.+
T Consensus 503 GkiVE~G~~~ 512 (534)
T COG4172 503 GKIVEQGPTE 512 (534)
T ss_pred CEEeeeCCHH
Confidence 9999999974
No 36
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-56 Score=551.58 Aligned_cols=198 Identities=20% Similarity=0.273 Sum_probs=164.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 588999988663 2458999999999999999999999999999999999876 45899999874
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000853 731 VQHTFARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgG 807 (1252)
+.+||++|++. +.+.+|++|++.+.. . .. ..+++++++++.+++. +..+.. +.+||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-EG----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---c-CC----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 36899999864 456799999986421 1 11 1134578899999984 455544 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-Ee
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~ 886 (1252)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+++ .+...+|++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999986 459999999975 56677899999975 7776 77
Q ss_pred cCC
Q 000853 887 GPL 889 (1252)
Q Consensus 887 g~~ 889 (1252)
|++
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 875
No 37
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.6e-56 Score=550.33 Aligned_cols=201 Identities=21% Similarity=0.301 Sum_probs=163.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 488899987652 2469999999999999999999999999999999999876 45899999542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSgGq 808 (1252)
..+||++|++ .+++.+||.|++.+....... ... +....++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQL---GKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhcccccc---Ccc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999996 477889999999886432211 111 123557899999964 34444 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-Eec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g 887 (1252)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||+++ .+...+|++++|.++|++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999975 4667789999997656766 555
Q ss_pred C
Q 000853 888 P 888 (1252)
Q Consensus 888 ~ 888 (1252)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 5
No 38
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.5e-55 Score=537.25 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=173.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ + ..|+++||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ .
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~-~-- 400 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE-L-- 400 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe-e--
Confidence 478888887552 1 24889999999999999999999999999999999887 458999986 1
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
.++|++|+..+.+.+||+|++.+..... .. ...+.++++.+++.+..++. +.+|||||||
T Consensus 401 -------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~Q 460 (590)
T PRK13409 401 -------KISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQ 460 (590)
T ss_pred -------eEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHH
Confidence 4799999988788999999998753211 11 12467899999998766655 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||++ .+...+|++++|. |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999975 4667789999884 477777764
Q ss_pred CCc---chhHHHHHhhC
Q 000853 890 GQH---SCKVIDYFESI 903 (1252)
Q Consensus 890 ~~~---~~~~~~~f~~~ 903 (1252)
.+- ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 432 23456777776
No 39
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-54 Score=540.10 Aligned_cols=198 Identities=24% Similarity=0.372 Sum_probs=161.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 488999987663 3469999999999999999999999999999999999876 45899999742
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000853 731 VQHTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSgG 807 (1252)
..+||++|+. .+.+..|+.+++.- .. . ....+.+.++++.+++.+ ..++. ++.||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~--~----~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA--P----QELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC--c----hhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHH
Confidence 2579999974 34456677776531 11 1 112356788999999963 44544 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-Ee
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~ 886 (1252)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...||++++|.+ |+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999975 46678999999974 7886 88
Q ss_pred cCCC
Q 000853 887 GPLG 890 (1252)
Q Consensus 887 g~~~ 890 (1252)
|+..
T Consensus 510 g~~~ 513 (638)
T PRK10636 510 GDLE 513 (638)
T ss_pred CCHH
Confidence 8763
No 40
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.6e-54 Score=536.23 Aligned_cols=202 Identities=24% Similarity=0.361 Sum_probs=162.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 488899987653 2469999999999999999999999999999999999876 45899998 4321
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSgGq 808 (1252)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++. ++.|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHH
Confidence 589999985 5778899999998753211 011 1133577889999985 344544 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE-EEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI-IYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~-~~~g 887 (1252)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.+ .+...+|+++++.++|++ .|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999886 459999999965 466789999999734665 4556
Q ss_pred CC
Q 000853 888 PL 889 (1252)
Q Consensus 888 ~~ 889 (1252)
+.
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
No 41
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.4e-53 Score=501.68 Aligned_cols=199 Identities=27% Similarity=0.364 Sum_probs=159.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++. ++.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.-
T Consensus 320 ~vl~~~~~~~~y~~------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~v 385 (530)
T COG0488 320 LVLEFENVSKGYDG------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGETV 385 (530)
T ss_pred eeEEEeccccccCC------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCce
Confidence 45888998876532 2579999999999999999999999999999999999776 348999876432
Q ss_pred CCcccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 730 KVQHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
.+||..|+. .+.+..|+.|++.-.. ++.. +..+...|..+++....-. ..++.|||||
T Consensus 386 --------~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~----~~v~~LSGGE 444 (530)
T COG0488 386 --------KIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQE----KPVGVLSGGE 444 (530)
T ss_pred --------EEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHh----CchhhcCHhH
Confidence 579999996 3347789999886321 1111 4558889999999765322 1256899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|.||.+|+.++.+|.+|+|||||++||..+...+.+.|.+. ..|||+||||.. -+-..+++++.+.+ +-..+.|.
T Consensus 445 k~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCC
Confidence 99999999999999999999999999999999999999986 579999999975 36677888888864 43444465
No 42
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=482.76 Aligned_cols=438 Identities=23% Similarity=0.364 Sum_probs=333.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ----KTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....++ .-++.|.|+..+.|++||.|||.++...+.
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~ 112 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTR 112 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccccccc
Confidence 47999999999999999999999998 99999999988755543 458899999999999999999987754322
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. .-.. |.++. ..++.++|+.+|+....+++||+ ||+||||-|.||
T Consensus 113 ~---~g~i----------------d~~~m-----------~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIA 157 (500)
T COG1129 113 R---FGLI----------------DRKAM-----------RRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIA 157 (500)
T ss_pred C---CCcc----------------CHHHH-----------HHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHH
Confidence 1 0000 11111 22357789999997668999988 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc-chHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR-SYICK 235 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~-~~~~~ 235 (1252)
||+..+++|++||||||+|+......+++.++++.. .|.+ ++.+.|...|+++.||||.||.+|+.+..++. .+.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~-ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~-- 233 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVA-IIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET-- 233 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCE-EEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC--
Confidence 999999999999999999999999999999999974 4544 45577899999999999999999999876641 110
Q ss_pred HHHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCccccccccc
Q 000853 236 FFEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSF 315 (1252)
Q Consensus 236 ~f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1252)
+.++..+
T Consensus 234 ------------------------------------------~~~~lv~------------------------------- 240 (500)
T COG1129 234 ------------------------------------------SEDELVR------------------------------- 240 (500)
T ss_pred ------------------------------------------CHHHHHH-------------------------------
Confidence 0000000
Q ss_pred ccccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHH
Q 000853 316 KKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPE 395 (1252)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 395 (1252)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 396 LNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFR 475 (1252)
Q Consensus 396 ~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~ 475 (1252)
.|+|-.
T Consensus 241 -------------------------------------------------~MvGr~------------------------- 246 (500)
T COG1129 241 -------------------------------------------------LMVGRE------------------------- 246 (500)
T ss_pred -------------------------------------------------HhhCcc-------------------------
Confidence 000000
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchh
Q 000853 476 AIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQT 555 (1252)
Q Consensus 476 ~i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~ 555 (1252)
T Consensus 247 -------------------------------------------------------------------------------- 246 (500)
T COG1129 247 -------------------------------------------------------------------------------- 246 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCC
Q 000853 556 LESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTT 635 (1252)
Q Consensus 556 l~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1252)
.... . +. .
T Consensus 247 -------------------------------------------------------~~~~----------~-----~~-~- 254 (500)
T COG1129 247 -------------------------------------------------------LEDL----------F-----PE-P- 254 (500)
T ss_pred -------------------------------------------------------hhhh----------c-----cc-c-
Confidence 0000 0 00 0
Q ss_pred CCCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC
Q 000853 636 AGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~ 715 (1252)
..+ ...+..++++|++. ...++|+||++++||++||-|-=|||+|-|+++|.|..+
T Consensus 255 ~~~-------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~ 310 (500)
T COG1129 255 PEE-------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310 (500)
T ss_pred ccc-------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc
Confidence 000 00122355665542 114679999999999999999999999999999999655
Q ss_pred CCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHc
Q 000853 716 GGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPNITVEESVIFSAWLRLSP--EIDLKTKAEFVNEVLQTI 786 (1252)
Q Consensus 716 ~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~~tv~e~l~~~~~l~~~~--~~~~~~~~~~~~~~l~~~ 786 (1252)
..+|+|.+||+++... ..+.-++|||.|. -++..+++.+|+.++...+... -.+....++.+++..+.+
T Consensus 311 --~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l 388 (500)
T COG1129 311 --ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388 (500)
T ss_pred --CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhc
Confidence 4589999999986543 3455789999885 4678999999999883222111 234455566788899998
Q ss_pred CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Q 000853 787 ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSID 866 (1252)
Q Consensus 787 ~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 866 (1252)
++.-..- +..+.+||||++|||.|||.|..+|++|||||||.|+|..++.+|.++|++++++|++||++|-+.. |
T Consensus 389 ~Ik~~s~----~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-E 463 (500)
T COG1129 389 RIKTPSP----EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-E 463 (500)
T ss_pred CcccCCc----cchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-H
Confidence 8753321 1225689999999999999999999999999999999999999999999999999999999999975 8
Q ss_pred HHHHhcceeeeecCcEEEEecCCCC
Q 000853 867 IFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 867 ~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
+...|||+++|.+ |+++..=+.++
T Consensus 464 ll~~~DRIlVm~~-Gri~~e~~~~~ 487 (500)
T COG1129 464 LLGLSDRILVMRE-GRIVGELDREE 487 (500)
T ss_pred HHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999985 89987655443
No 43
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.2e-51 Score=509.18 Aligned_cols=200 Identities=18% Similarity=0.299 Sum_probs=158.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~~------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYPG------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeCC------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 5889999887631 2358999999999999999999999999999999999877 45899998752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSgGqr 809 (1252)
..+||++|++. ..+++.++..+......+ ... ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999852 345666654322111111 111 245788999999974 34433 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE-EecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII-YSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~ 888 (1252)
|||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++||+++ .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888775 349999999975 46677899999974 8887 7776
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 5
No 44
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.7e-49 Score=442.93 Aligned_cols=442 Identities=20% Similarity=0.322 Sum_probs=340.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcccc----ceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ----KTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+.+|+|.||||||||+++|.|.++|+ +|+|.++|+++.-..++ .-+|.|.||..+++++||.|||..+..-..
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~ 108 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccc
Confidence 46899999999999999999999998 99999999988655543 458999999999999999999998753210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. .. +.+ +.+.+++++.+.+||+-..|..|++ ||-||||||.|-
T Consensus 109 ~~-~~-------------------~~~-----------~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIl 152 (501)
T COG3845 109 GG-LI-------------------DRR-----------QARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEIL 152 (501)
T ss_pred cc-cc-------------------CHH-----------HHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHH
Confidence 00 00 000 0123467889999999999999998 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKF 236 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1252)
++|+.+|++|||||||+-|-|....++++.|+++++ .|+++|. ++|...|+.+.|||+.||.+|+++-.-+ ..
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~-ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~--- 225 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIF-ITHKLKEVMAIADRVTVLRRGKVVGTVD--PV--- 225 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeccHHHHHHhhCeeEEEeCCeEEeeec--CC---
Confidence 999999999999999999999999999999999986 5666654 6788999999999999999999753321 00
Q ss_pred HHhcCCCCCCCCChhHHHHHhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhHHHHHHHhhccCCCcccccccccc
Q 000853 237 FEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFK 316 (1252)
Q Consensus 237 f~~~G~~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1252)
...+.++..+
T Consensus 226 --------------------------------------~~~t~~ela~-------------------------------- 235 (501)
T COG3845 226 --------------------------------------AETTEEELAE-------------------------------- 235 (501)
T ss_pred --------------------------------------CCCCHHHHHH--------------------------------
Confidence 0000000000
Q ss_pred cccccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHhhheeccccCCcchHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000853 317 KYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPEL 396 (1252)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 396 (1252)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhHHhhhccCCCcCchhHHHHHHHHhhhHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000853 397 NMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRA 476 (1252)
Q Consensus 397 ~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~gl~~~~~~f~~~~l~~~~~~~~~~~~~~~ 476 (1252)
.|+|-.
T Consensus 236 ------------------------------------------------lMvG~~-------------------------- 241 (501)
T COG3845 236 ------------------------------------------------LMVGRE-------------------------- 241 (501)
T ss_pred ------------------------------------------------HhcCCc--------------------------
Confidence 000000
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCHHHHHHHHHHHHhcCCCccccccCCcccccchhh
Q 000853 477 IASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTL 556 (1252)
Q Consensus 477 i~~~~~~~~~a~~i~~~~~~~~~l~~gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l 556 (1252)
+
T Consensus 242 ------------------------------------------------------------------------------v- 242 (501)
T COG3845 242 ------------------------------------------------------------------------------V- 242 (501)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhcccccccccCCCCCCCCCcccccCCCCCCC
Q 000853 557 ESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTA 636 (1252)
Q Consensus 557 ~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1252)
. ... .. ..
T Consensus 243 ----------------------------------------------~---------~~~--------~~--------~~- 250 (501)
T COG3845 243 ----------------------------------------------V---------LRV--------VK--------PP- 250 (501)
T ss_pred ----------------------------------------------c---------ccc--------cc--------CC-
Confidence 0 000 00 00
Q ss_pred CCCCCCccCCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC
Q 000853 637 GPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG 716 (1252)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~ 716 (1252)
..++ +..++.+|++..... ....+++|||++++||++||.|-.|-|-+.|+.+|+|..++
T Consensus 251 -~~pg-------~~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~ 310 (501)
T COG3845 251 -STPG-------EVVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP 310 (501)
T ss_pred -CCCC-------CeEEEEeeeEeecCC------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc
Confidence 0001 235788888764321 24578999999999999999999999999999999998763
Q ss_pred CeEEEEEEECCeeC-C---ccc-ccceEEEEccCCC---CCCCCCHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHH
Q 000853 717 GIIEGDIRIGGYPK-V---QHT-FARISGYCEQNDI---HSPNITVEESVIFSAWLRL----SPEIDLKTKAEFVNEVLQ 784 (1252)
Q Consensus 717 ~~~~G~i~~~g~~~-~---~~~-~~~~~~~v~q~~~---~~~~~tv~e~l~~~~~l~~----~~~~~~~~~~~~~~~~l~ 784 (1252)
.+|+|.++|+++ . ... .+.-++|||+|.. +.+.+|+.||+.+...-+. ..-.......+...++++
T Consensus 311 --~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~ 388 (501)
T COG3845 311 --ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIE 388 (501)
T ss_pred --CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHH
Confidence 369999999986 2 222 2345899999863 4578999999988643211 112344566777889999
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 000853 785 TIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPS 864 (1252)
Q Consensus 785 ~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 864 (1252)
.++....... ...+.||||++||+-+||+|.++|++|+..+||.|||..+.+.|.+.|.+.+++|+.|+++|-+.+
T Consensus 389 ~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD 464 (501)
T COG3845 389 EFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD 464 (501)
T ss_pred HcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH
Confidence 9887632211 125789999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 865 IDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 865 ~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|+++.+|++.+|.+ |+++...++++
T Consensus 465 -Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 465 -EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred -HHHHhhheeeeeeC-Cceeccccccc
Confidence 89999999999985 89999888764
No 45
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-48 Score=387.32 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=190.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|++.++ ++..+|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.+||.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778887655 45689999999999999999999999999999999999877 56999999997653
Q ss_pred ----cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 ----QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ----~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
....|+.+|+|+|+..+||.+||.||+.++-.. ....++++.+++..+.|+.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 235788999999999999999999999987432 13456778888999999999999999876 6799999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|.|++||++.. .-+.+||++.|+ +|++++.|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999998764 456789999997 59999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 874
No 46
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-45 Score=388.84 Aligned_cols=220 Identities=24% Similarity=0.327 Sum_probs=192.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
+++++++..+... ..+...+|+|||++|++||++||+|+||||||||++++.++.. |++|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5778887655421 1123569999999999999999999999999999999999877 56999999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. +..|+.+|+++|+..++...||.||+.|+..+.. .++++.++++.++++.+||.+..+.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 3467899999999999999999999999988764 45788889999999999999988876 57999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
|||||||+|||||+.+|+||++|||||+|||++...|.+.|+++.++ |.||+++||+++ -+-+.|||+.+|. +|+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEEE
Confidence 99999999999999999999999999999999999999999999865 999999999864 2556788888887 59999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++.+
T Consensus 222 E~G~v~~ 228 (339)
T COG1135 222 EEGTVSE 228 (339)
T ss_pred EeccHHH
Confidence 9999754
No 47
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.7e-45 Score=370.81 Aligned_cols=229 Identities=26% Similarity=0.362 Sum_probs=200.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+++++++.++ +++.+++|||++|++||+++|+||||+|||||||+|.|+.+ |.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 58888887654 46789999999999999999999999999999999999988 5699999999986
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000853 731 VQ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~ 803 (1252)
.. ...++++|+++|+-.+|.++||+||+.|.. |...+.+++..++.+..-|+.+||... .+. .+.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADL-----YPSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----Cchh
Confidence 43 245778999999999999999999999975 444566778888889999999999887 443 3789
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
|||||+||+++|||++.+|+||++||||+||||.++..+-++|+++.+. |.|++++|||.+ ++...+|+++++.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 999999999986 68889999999985 89
Q ss_pred EEEecCCCCcch----hHHHHHhhC
Q 000853 883 IIYSGPLGQHSC----KVIDYFESI 903 (1252)
Q Consensus 883 ~~~~g~~~~~~~----~~~~~f~~~ 903 (1252)
|+++|++++..+ .+.+||...
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 999999876432 356777665
No 48
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-44 Score=368.58 Aligned_cols=216 Identities=26% Similarity=0.359 Sum_probs=193.1
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++|+|++..+ +++.+++|+|++|++||++.++|||||||||+||+|.++.. +++|+|++||+++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 5788887654 35679999999999999999999999999999999999988 56999999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG--IKYSLVGLPGVSGLST 806 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~g~~~~~~lSg 806 (1252)
. ...|+.+|||-|.-.+||++||.||+.+--.+. ..++++.+++++|+++.+||.. ..++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457899999999999999999999999887665 4567788899999999999975 44443 789999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||+|||.+||||+.+|+||+||||+++|||.++..+++-++++.++ |+|||++|||.+ |.+.+.|++++|. +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999866 999999999986 7889999999997 599999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.++|++.
T Consensus 217 ~~~P~~i 223 (309)
T COG1125 217 YDTPDEI 223 (309)
T ss_pred eCCHHHH
Confidence 9998764
No 49
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=369.32 Aligned_cols=204 Identities=27% Similarity=0.383 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+.++++++.+. ...+|+|||++|++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 367777776653 3569999999999999999999999999999999999987 5699999999886
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
......+|||+|++.++|.+||+||+.++...+. ...+++++++.+.|+.+||.+..+.. +++|||||||
T Consensus 68 --~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 --TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred --CCCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 2344567999999999999999999999987764 34456667899999999999998876 6899999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
||+|||||+.+|++|+||||+++||+.|+..+++.|.++.+ .++||+++|||.+ |...+.||+++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999875 4899999999986 677889999999853
No 50
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=2.7e-43 Score=394.82 Aligned_cols=201 Identities=20% Similarity=0.239 Sum_probs=159.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+.++|+++.++.. -.++++++|-|.+++.++++||||+|||||||++.|.+. |..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~~~------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCCc------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc-
Confidence 57888888766432 258999999999999999999999999999999999887 457888655443
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
++++..|+. .+..+.++-|++.=.. .++...+.+..++..+||.+..... ..++||+||
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gq 514 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQ 514 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhccccc
Confidence 234444542 3334567777765211 1133456789999999999665443 257999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|+||.+|+.++.+|.+|+|||||+|||..+...+-+.|.+. ..+||++|||.. -+.+.++++.+..+++...+.|.
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence 99999999999999999999999999999999999999886 468999999976 36778899999998877888887
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
.
T Consensus 591 i 591 (614)
T KOG0927|consen 591 I 591 (614)
T ss_pred H
Confidence 4
No 51
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-43 Score=372.76 Aligned_cols=218 Identities=28% Similarity=0.461 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. + ++|+||||++++|++++|+||||||||||+|+|.|.++ |.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5889999988742 2 59999999999999999999999999999999999887 5699999999876
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQHTFARISGYCEQNDI--HSPNITVEESVIFSAWLRLS--PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
....-+..+|||||... ....+||+|-+..+..-+.. .... ++.++.++++|+.+|+.+.+++.+| +|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 55444568999999652 23458999999876322211 1122 3346789999999999999998865 8999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||+|||-|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+++.|. +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999997 5888999999995 689999
Q ss_pred cCCCCc
Q 000853 887 GPLGQH 892 (1252)
Q Consensus 887 g~~~~~ 892 (1252)
|++++.
T Consensus 220 G~~~~~ 225 (254)
T COG1121 220 GPPEEV 225 (254)
T ss_pred cChhhc
Confidence 998764
No 52
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-43 Score=395.87 Aligned_cols=214 Identities=29% Similarity=0.450 Sum_probs=188.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|++..+.. ++.+|+||||+|++||++|++||||||||||+|+|+|... +++|+|.++|.+..
T Consensus 5 i~~~~l~k~~~~------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYGG------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeCC------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCc
Confidence 566777665421 4679999999999999999999999999999999999988 46999999998865
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ...++.+||+||++.+++.+||+|++.|.+.++.... +..+++++++++.++|.+..++. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 4567889999999999999999999999999986543 44567899999999999855444 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+||+||+++|++|||||||+||||.++..+++.|++++++| +||+++||+++ ++...||++++|. +|++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999986 6777799999997 599999998
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
+
T Consensus 221 ~ 221 (293)
T COG1131 221 P 221 (293)
T ss_pred H
Confidence 6
No 53
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.8e-43 Score=345.23 Aligned_cols=213 Identities=26% Similarity=0.362 Sum_probs=186.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++|+||+..|+. .+++|+||||+|++||++-|+||||||||||||+|.+... ++.|+|.+||+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 567777765532 2569999999999999999999999999999999999877 56999999999865
Q ss_pred c---c---cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q---H---TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~---~---~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. + -.||++|+|+||..+.+..||.||+.|+.+..+ .+.++.++++.++|+.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 1 358899999999999999999999999987764 34567778899999999999998776 57999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||+|||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|.||++.||+ .++.+.+.+.++..++|+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd--~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD--LELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc--HHHHHhccCcEEEEeCCEEEe
Confidence 999999999999999999999999999999999999999999999889999999997 467777776666666799987
Q ss_pred ecC
Q 000853 886 SGP 888 (1252)
Q Consensus 886 ~g~ 888 (1252)
+..
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 654
No 54
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-44 Score=353.51 Aligned_cols=203 Identities=27% Similarity=0.388 Sum_probs=184.9
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
.++++||||+++.||++||+|||||||||+|++|++++. |++|.|++||.+..+ ...++.+|.++.+.-++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 348999999999999999999999999999999999988 569999999998643 4578899999988888999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+|||.|.+++.. ....+.+++.+++.+.++|.++.|+++| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 999999998864 4556677889999999999999999865 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|..+...+.+.++++++.|++||++||.++ |+.+.||+++++.+ |++++.|++++
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~~ 219 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIEA 219 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHHH
Confidence 999999999999999988999999999975 67779999999975 89999999754
No 55
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-43 Score=359.78 Aligned_cols=221 Identities=29% Similarity=0.391 Sum_probs=188.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..++ +++++|+|||++|++||+++|+|||||||||||++|.|... +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478899887764 34679999999999999999999999999999999999776 5689999999765
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 731 VQ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-----PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 731 ~~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
.. +++|+.+||++|++.+.+.++|.+|+..+..-+.+ -....++.+..+-+.|+.+|+.+.+..+.
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 35678899999999999999999999876422211 11222444566788999999999887763
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
..|||||+|||+|||||+.+|+|++.|||+++|||.+++.+|+.|+++.++ |.|||++.|+.+. ..++|||++-|.
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 589999999999999999999999999999999999999999999999854 9999999999764 567889999997
Q ss_pred cCcEEEEecCCCCc
Q 000853 879 NGGRIIYSGPLGQH 892 (1252)
Q Consensus 879 ~~G~~~~~g~~~~~ 892 (1252)
+|+++|+||+.+.
T Consensus 223 -~G~ivfDg~~~el 235 (258)
T COG3638 223 -AGRIVFDGPASEL 235 (258)
T ss_pred -CCcEEEeCChhhh
Confidence 5999999998764
No 56
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.9e-43 Score=374.64 Aligned_cols=220 Identities=27% Similarity=0.409 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|.++ +.+|+|.+||+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367888888763 4679999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP-EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. +.+.+.++|+||.....+.+||+|-+.++..-+... ....++.++.++++|+.+|+.+.+++.+ .+|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 457788999999998888999999999874322111 1112334457999999999999998764 68999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||.|||||+.+|++|+||||||+||...+.++++.++++++ +|+|||+++||++. ....||++++|. +|+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk-~G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLK-DGKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEE-CCeEEe
Confidence 999999999999999999999999999999999999999999984 59999999999874 667889999997 599999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.|++++.
T Consensus 220 ~G~p~ev 226 (258)
T COG1120 220 QGTPEEV 226 (258)
T ss_pred ecCcchh
Confidence 9998753
No 57
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.7e-43 Score=364.27 Aligned_cols=210 Identities=27% Similarity=0.432 Sum_probs=177.0
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|++..+... .....+|++|||+|++||+++|+|||||||||||++|.|... |++|.|.++|.++.
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcC
Confidence 3466776655332 112579999999999999999999999999999999999887 46999999998764
Q ss_pred cc------c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 732 QH------T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 732 ~~------~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
.. . .++.+|||+|+..+.|++||+||+.++..+.... ....+++++++++.+||.+..+.. .+.+|
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~----~p~eL 143 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKK----KPSEL 143 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccC----Cchhc
Confidence 31 2 3457999999999999999999999887665432 224567788999999999776522 25799
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||||+|||||+.+|++++.||||.+||+.++..|++.++++.++ |+|||++|||+ ++...+||++.+.+ |+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999999999999999999999999999865 99999999985 67889999999986 66
No 58
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=347.07 Aligned_cols=219 Identities=26% Similarity=0.350 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCC---CCCeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK---TGGIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~---~~~~~~G~i~~~g 727 (1252)
.++.+|+++.| +++.+|+|||+.|++++++|++|||||||||||+++.... +.-..+|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 47788888776 3567999999999999999999999999999999999743 3335789999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
+++.. ..+|+.+|+|+|.|.-|| +|++||+.|+.++.+..+ ++.++.|++.|+...|++....+.... ..
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-a~ 148 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-AL 148 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC-cc
Confidence 98643 247889999999999988 999999999988876443 677889999999999987654444333 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||+|||||||||+.+|+||+||||||+|||.+...|.++|.+|++ .-|||++||.+. ......|+...+.. |+
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~-G~ 225 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYL-GE 225 (253)
T ss_pred CCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcc-cE
Confidence 7999999999999999999999999999999999999999999999985 799999999864 45667789988875 89
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
++++|+.+
T Consensus 226 LvE~g~T~ 233 (253)
T COG1117 226 LVEFGPTD 233 (253)
T ss_pred EEEEcCHH
Confidence 99999974
No 59
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.1e-37 Score=406.75 Aligned_cols=218 Identities=22% Similarity=0.354 Sum_probs=188.3
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++.+|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46889999887631 13569999999999999999999999999999999999987 569999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 730 KVQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 730 ~~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
+.. ...++.+|||+|++.+++.+||+|++.|.++++.. ..++.+++++++++.+||.+..++. +++||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~---~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR---SWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHH
Confidence 643 23567799999999999999999999998776532 2334456789999999999887766 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||||+||+||+.+|++|+|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++...+|++++|.+ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999975 56678999999974 8999999
Q ss_pred CCCC
Q 000853 888 PLGQ 891 (1252)
Q Consensus 888 ~~~~ 891 (1252)
++..
T Consensus 1143 s~~~ 1146 (2272)
T TIGR01257 1143 TPLF 1146 (2272)
T ss_pred CHHH
Confidence 8743
No 60
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-42 Score=381.26 Aligned_cols=217 Identities=27% Similarity=0.398 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..+. +..+|+|+|++|++||+++|+|||||||||||++|+|+.. +++|+|.++|.++
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 478888876652 2228999999999999999999999999999999999987 5699999999998
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
+. ...+|.+++|+|+..+||++||+||+.|+.+++. ..+++.+++|+++.+.++|.+..+++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 3456789999999999999999999999988764 34567788999999999999999887 579999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||. .|...++|++++|. +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 89999999996 47888999999998 699999999
Q ss_pred CCCc
Q 000853 889 LGQH 892 (1252)
Q Consensus 889 ~~~~ 892 (1252)
+.+.
T Consensus 218 p~el 221 (338)
T COG3839 218 PLEL 221 (338)
T ss_pred hHHH
Confidence 8664
No 61
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-42 Score=363.13 Aligned_cols=207 Identities=29% Similarity=0.462 Sum_probs=186.8
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCe---eCCc-ccccceEEEEccCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY---PKVQ-HTFARISGYCEQNDIHSP 750 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~ 750 (1252)
+...+++|||++|+.||++|++|||||||||||++|+|+.. ++.|.|.+||. +... ....|++|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34568999999999999999999999999999999999988 56999999999 5444 344578999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
.+||.||+.|+.+.+ ...++..+.+.++.+.|+.+.|++..+.. +.+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998877 33455677788999999999999988776 679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 831 TSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
.++||..-+.++.+.|+++.++ |.|++++|||++ |..+.+|++++|.+ |+|...||+.+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 9999999999999999999866 999999999986 78999999999975 99999999865
No 62
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-42 Score=383.66 Aligned_cols=218 Identities=28% Similarity=0.399 Sum_probs=194.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..+ ++..+|+|+|++|++||+++++|||||||||||++|+|... |++|+|.+||+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 58888887665 34679999999999999999999999999999999999987 5699999999998
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
..- ..+|.+|+|+|+..+||++||+||+.|+.+++. ...+++.++++.++++.++|.+..+++ +.+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 653 457889999999999999999999999987442 334566778999999999999988776 579999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||++||||+.+|++|+||||.|+||..-+.+++.-|+++.++ |.|.|++|||.+ |...+.|++++|. +|+|...|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCC
Confidence 9999999999999999999999999999999999999998755 999999999975 7788999999997 599999999
Q ss_pred CCCc
Q 000853 889 LGQH 892 (1252)
Q Consensus 889 ~~~~ 892 (1252)
+++.
T Consensus 221 P~ei 224 (352)
T COG3842 221 PEEI 224 (352)
T ss_pred HHHH
Confidence 8764
No 63
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.3e-40 Score=378.28 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 588899987663 3469999999999999999999999999999999999887 4689999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
.. ...++.+||++|++.+++.+||+||+.|.+.++. ...++..++++++++.++|.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2356789999999999999999999998776543 233444567889999999988777764 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999975 67778999999975 89999999
Q ss_pred CC
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
++
T Consensus 222 ~~ 223 (306)
T PRK13537 222 PH 223 (306)
T ss_pred HH
Confidence 74
No 64
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=342.58 Aligned_cols=219 Identities=24% Similarity=0.342 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|++..++.... ...+|+||||+|.+||++||+|+||||||||.++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~~---------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGKF---------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCcc---------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 4778888877754321 1259999999999999999999999999999999999887 4699999999875
Q ss_pred Ccc----cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 731 VQH----TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
... .+++.+.+|+||| .+.|..||++.|.-+.... ..+ +.++++.++++.+||....-++ .+.+|
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~--~~~~~i~~~L~~VgL~~~~l~R----~P~eL 142 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLS--KSQQRIAELLDQVGLPPSFLDR----RPHEL 142 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---Ccc--HHHHHHHHHHHHcCCCHHHHhc----Cchhc
Confidence 543 4677899999998 4678999999987665432 222 2334489999999997653322 36799
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++|||||+.+|++||||||||+||+..+.+|+++|.++.++ +.|.|++|||.+ -+...|||+++|.+ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999865 889999999976 36678899999975 999
Q ss_pred EEecCCCC
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.++.++
T Consensus 221 vE~~~~~~ 228 (252)
T COG1124 221 VEIGPTEE 228 (252)
T ss_pred EEeechhh
Confidence 99999754
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.8e-40 Score=377.53 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=187.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.+ .+.+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788988776421 012469999999999999999999999999999999999887 46899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ..++.+||++|+..+++..||+||+.+....+. ...++.++++.++++.+||.+..+.. +.+||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 236689999999999999999999998765432 33455667789999999999887765 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|. +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999865 999999999975 4667899999997 59999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++.+
T Consensus 221 ~~g~~~~ 227 (343)
T TIGR02314 221 EQGTVSE 227 (343)
T ss_pred EEcCHHH
Confidence 9998753
No 66
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=355.15 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++|+++. + ..+|+|+|++|++||.++|+|+||||||||+++|+|... +.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~-----------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG-----------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC-----------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 3678899887742 1 469999999999999999999999999999999999988 4589999999985
Q ss_pred C----cccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 731 V----QHTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~----~~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. ....++.+|||+|+|. .+..-||.|.+.|+.... ..+.++.+++++++++.+|+.+.+++. +.+||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 3467889999999984 456789999999987544 345567888999999999999987765 57999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
|||||||+||.+|+.+|++|+|||||||||+..++.+++.++++.++ |+|||++|||.+ .+.+.+|++++|.+ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 789999999975 57777999999975 8999
Q ss_pred EecCCC
Q 000853 885 YSGPLG 890 (1252)
Q Consensus 885 ~~g~~~ 890 (1252)
++|++.
T Consensus 219 ~~g~p~ 224 (235)
T COG1122 219 ADGDPA 224 (235)
T ss_pred ecCCHH
Confidence 999873
No 67
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-40 Score=321.55 Aligned_cols=197 Identities=27% Similarity=0.380 Sum_probs=172.8
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESVIF 760 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~ 760 (1252)
..+++|++||++||+||||||||||||+++|... |.+|+|++||++.... ...|-++.++|+.++|..+||++|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 5678899999999999999999999999999887 4599999999986543 456678999999999999999999988
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000853 761 SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840 (1252)
Q Consensus 761 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~ 840 (1252)
+..-. .+.+ .+.+++++.++..+||.++.+++ +.+|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~--LkL~-a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG--LKLN-AEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc--cccC-HHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 64211 1222 34567799999999999998877 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 841 IVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 841 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
++..++.++.+ ++.|++++||+|+ +.....|+++++.+ |+|.+.|+..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 99999999985 4899999999997 78889999999975 9999999863
No 68
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-39 Score=376.15 Aligned_cols=217 Identities=27% Similarity=0.428 Sum_probs=184.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++|+||++.|+.++ +.++|||+||+|+|||.+|++||||+||||+.++|...+. |.+|+|.+||+|
T Consensus 464 G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 3699999999998653 4679999999999999999999999999999999999887 569999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCcccccccccCCCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
+.. ..+++++|+|.|+|.+| +-|++||+.|+.. +.++++..+ .+.+.+ .++.+..||.+|..+
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG- 602 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKG- 602 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceee-cccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCcc-
Confidence 653 46789999999999986 5699999999753 233333221 122222 356778999999876
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
..||||||||++|||||++||+||||||+||+||++++..+++.|.++.+ ++|||++.|+. ..++.+|+|++++ +|
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRL--STV~~Ad~Ivvi~-~G 678 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRL--STVRHADQIVVID-KG 678 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhh--hHhhhccEEEEEc-CC
Confidence 58999999999999999999999999999999999999999999999875 69999999986 4678999999997 49
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|+.+|
T Consensus 679 ~V~E~G~h~e 688 (716)
T KOG0058|consen 679 RVVEMGTHDE 688 (716)
T ss_pred eEEecccHHH
Confidence 9999998654
No 69
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-40 Score=360.23 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=180.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4677776652 2459999999999999999999999999999999999877 458999999987542
Q ss_pred ------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 733 ------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 733 ------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
..+++.++|++|++.+++.+||.||+.+....+. ....++..+++.++++.+++.+..++. +++|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 2346679999999988889999999988754321 123344456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|. +|++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999864 899999999975 5667899999997 589999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 218 ~g~~~ 222 (235)
T cd03261 218 EGTPE 222 (235)
T ss_pred ecCHH
Confidence 99863
No 70
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4e-41 Score=332.21 Aligned_cols=210 Identities=24% Similarity=0.370 Sum_probs=186.1
Q ss_pred cccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCC
Q 000853 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIH 748 (1252)
Q Consensus 673 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~ 748 (1252)
++++++++++||+++++||++|++|||||||||.+.++.|... +.+|+|.+||.+++... .|.-+||.||++..
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchH
Confidence 3467889999999999999999999999999999999999988 45999999999976532 23458999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000853 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828 (1252)
Q Consensus 749 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlD 828 (1252)
|-.+||+||+......+.. +....+++++++++|+.+++.+.++.. ...||||||+|+.|||||+.+|+.++||
T Consensus 91 Fr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred hhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHHHHHHHHHhcCCCEEEec
Confidence 9999999999988777642 223345666789999999999999876 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 829 EPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 829 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
||++|+||.+..+|+++++.|+++|..|++|-|... |....|||..++.+ |++..+|++++.
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ei 226 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEEI 226 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHHH
Confidence 999999999999999999999999999999999986 78899999999985 899999998653
No 71
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.4e-39 Score=372.94 Aligned_cols=216 Identities=24% Similarity=0.351 Sum_probs=187.4
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 3588999988763 3469999999999999999999999999999999999887 458999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 730 KVQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 730 ~~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
... ...++.+||++|++.+++.+|+.||+.+.+.++. ....+..++++++++.++|.+..++.+ ++||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2356789999999999999999999998765542 223344556788999999998777764 589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999877999999999975 67788999999975 8999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 255 ~~~ 257 (340)
T PRK13536 255 RPH 257 (340)
T ss_pred CHH
Confidence 974
No 72
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=375.71 Aligned_cols=217 Identities=25% Similarity=0.355 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..++ +++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 377888887652 12468999999999999999999999999999999999887 5699999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ...++.+|||+|++.+++++||+||+.|+.+.+. .+.++.+++++++++.++|.+..++. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHH
Confidence 43 2235679999999999999999999999865432 34455567789999999998877765 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECC
Confidence 9999999999999999999999999999999999999999865 899999999975 6788999999997 599999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 219 ~~~ 221 (356)
T PRK11650 219 PVE 221 (356)
T ss_pred HHH
Confidence 754
No 73
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=373.40 Aligned_cols=216 Identities=23% Similarity=0.385 Sum_probs=189.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578899987663 2458999999999999999999999999999999999987 5699999999986
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
... ..++.+|||+|++.+++.+||+||+.|+.+.+. ...++.+++++++++.++|.+..++. ++.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 542 235679999999999999999999999876542 34455677899999999998877665 568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|.+ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999975 67788999999985 89999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 221 ~~~ 223 (351)
T PRK11432 221 PQE 223 (351)
T ss_pred HHH
Confidence 754
No 74
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.6e-39 Score=374.47 Aligned_cols=216 Identities=26% Similarity=0.411 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478889887663 2458999999999999999999999999999999999887 5699999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ...++.+||++|++.++|.+||+||+.|+.+.+ ..+.++.+++++++++.++|.+..++. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 234567999999999999999999999986543 233455667899999999999887765 568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|.+ |++++.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999975 67888999999975 89999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 219 ~~~ 221 (353)
T TIGR03265 219 PQE 221 (353)
T ss_pred HHH
Confidence 754
No 75
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.1e-39 Score=373.55 Aligned_cols=217 Identities=26% Similarity=0.358 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEE--EEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIE--GDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 728 (1252)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 478889887663 2458999999999999999999999999999999999887 457 99999999
Q ss_pred eCCcc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 729 PKVQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 729 ~~~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
++... ..++.+||++|++.+++.+||+||+.|+...+. ...++.+++++++++.++|.+..++. +++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK---MPKADIAERVADALKLVGLGDAAAHL-----PAQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHH
Confidence 86432 245679999999999999999999999875442 34455567799999999999887766 5689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET--GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999999876 799999999975 6778899999997 589999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.|++++.
T Consensus 220 ~g~~~~~ 226 (362)
T TIGR03258 220 HGEPQAL 226 (362)
T ss_pred EcCHHHH
Confidence 9997543
No 76
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2e-39 Score=369.38 Aligned_cols=203 Identities=27% Similarity=0.402 Sum_probs=177.6
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~~t 753 (1252)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4569999999999999999999999999999999999887 458999999987643 234667999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
|+||+.+.+.++. ....+.+++++++++.++|.+..++. +++|||||||||+||+||+++|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998776542 22334456789999999998877765 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 834 LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|+++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 209 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTPE 209 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999877999999999975 5677899999997 58999999863
No 77
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.3e-39 Score=370.05 Aligned_cols=218 Identities=25% Similarity=0.376 Sum_probs=186.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887652 2458999999999999999999999999999999999877 45899999999864
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 QH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ..++.+||++|++.+++.+||+||+.|+...+.. .....++.++++.++++.++|.+..++. +.+||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 32 2346799999999999999999999998654211 1233455567889999999998877665 568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999866 899999999975 6778899999997 589999998
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 221 ~~~ 223 (353)
T PRK10851 221 PDQ 223 (353)
T ss_pred HHH
Confidence 754
No 78
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-39 Score=328.45 Aligned_cols=190 Identities=23% Similarity=0.351 Sum_probs=160.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCC----ccccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE----FVPQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~----~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|||||||||||++|.|+.+|+ +|+|.++|.++.. ...|+.+|+|+|+..+||++||.||+..+...-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 37899999999999999999999987 9999999976632 2246789999999999999999999998753210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
+.. . .+.+.++.++|+..||.+.+|...+. |||||||||+||
T Consensus 107 -~~~---k-----------------------------~eA~~~A~~lL~~VGL~~ka~~yP~q-----LSGGQqQRVAIA 148 (240)
T COG1126 107 -KLS---K-----------------------------AEAREKALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIA 148 (240)
T ss_pred -CCC---H-----------------------------HHHHHHHHHHHHHcCchhhhhhCccc-----cCcHHHHHHHHH
Confidence 000 0 01123457789999999999988765 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||+.+|+++++|||||+|||+...++.+.++++++ .|.|.++ ++|-..-+.+.+|||+.|++|++++.|+++++
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMiv-VTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMII-VTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEE-EechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999997 4666665 45667788889999999999999999988776
No 79
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=331.33 Aligned_cols=205 Identities=25% Similarity=0.405 Sum_probs=186.2
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~t 753 (1252)
.+++.+++|+||.++||+++|++|||||||||++++|.|.+. +++|+|.++|.+.... .+.+|||.|.+.-+++.+|
T Consensus 12 Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMT 88 (300)
T ss_pred cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhccCccCc
Confidence 356789999999999999999999999999999999999988 5699999999986543 4557899999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
|.|.|.|.|++++ .+.++.++.+...|+.+++.+...++ +.+||.|++|++.+-.+++++|+++|||||+||
T Consensus 89 v~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 89 VEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 9999999999985 45667778899999999999888776 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 834 LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|. +|+.|.+|++.+
T Consensus 161 LDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~-kG~~V~~G~v~~ 216 (300)
T COG4152 161 LDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLK-KGQTVLYGTVED 216 (300)
T ss_pred CChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheec-CCceEEeccHHH
Confidence 9999999999999999999999999999986 6888999999997 589999999753
No 80
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-39 Score=347.27 Aligned_cols=199 Identities=30% Similarity=0.450 Sum_probs=170.0
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 468999999999999999999999999999999999877 468999999987643 22356789999999888899999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD 835 (1252)
||+.+...... ...+..+++++++++.+++.+..++. +.+||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99988654321 22334456688999999998766654 46899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 836 ARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 836 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999764 899999999975 56678999999975 8888765
No 81
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=8e-39 Score=369.99 Aligned_cols=216 Identities=25% Similarity=0.343 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899987663 2458999999999999999999999999999999999887 4689999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ...++.+||++|++.++|.+||.||+.|+...+. ....+.+++++++++.++|.+..++. +.+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 43 2245679999999999999999999999865432 23445566789999999999877765 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999865 999999999975 6778899999997 599999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+.+
T Consensus 229 ~~~ 231 (375)
T PRK09452 229 PRE 231 (375)
T ss_pred HHH
Confidence 754
No 82
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=369.68 Aligned_cols=216 Identities=25% Similarity=0.366 Sum_probs=187.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++..+. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588899987652 2458999999999999999999999999999999999987 4589999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ...++.+||++|++.+++.+||.||+.|+.+.+. ....+.++++.++++.++|.+..++. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 2346789999999999999999999999865432 23455667899999999998877665 568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcC
Confidence 9999999999999999999999999999999999999998754 899999999975 6788999999997 589999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 234 ~~~ 236 (377)
T PRK11607 234 PEE 236 (377)
T ss_pred HHH
Confidence 754
No 83
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=347.41 Aligned_cols=200 Identities=27% Similarity=0.417 Sum_probs=172.7
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 756 (1252)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc--cccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999876 45899999998764 24567899999998888899999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836 (1252)
Q Consensus 757 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~ 836 (1252)
|+.+....+. ...+...++++++++.+++.+..++. +.+||||||||++|||||+.+|++++|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9998754432 22334456788999999998766654 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec-CcEEEEecCC
Q 000853 837 RAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGPL 889 (1252)
Q Consensus 837 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~ 889 (1252)
.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ +|++++.+++
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999975 56678999999975 5999998875
No 84
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.6e-39 Score=364.31 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478889887663 2469999999999999999999999999999999999877 4589999999875
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
.. ...++.+||++|++.+++.+||+||+.+.+..+. ...++..++++++++.++|.+..++. +++|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVR-----VALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHH
Confidence 32 2346679999999988889999999987654432 22334445678899999998877665 45899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 99999999999999999999999999999999999999999877999999999975 5667899999997 589999998
Q ss_pred CC
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
++
T Consensus 219 ~~ 220 (303)
T TIGR01288 219 PH 220 (303)
T ss_pred HH
Confidence 63
No 85
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=347.86 Aligned_cols=213 Identities=27% Similarity=0.351 Sum_probs=180.0
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 4677776552 2469999999999999999999999999999999999876 458999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
...++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.++|.+..++. +..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHH
Confidence 2345678999999988889999999998765432 22334456788999999998766655 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
|++||+||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999975 5667789999997 5899998876
Q ss_pred C
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
+
T Consensus 217 ~ 217 (220)
T cd03265 217 E 217 (220)
T ss_pred H
Confidence 3
No 86
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=9.3e-39 Score=347.43 Aligned_cols=209 Identities=25% Similarity=0.353 Sum_probs=175.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 567888876631 12359999999999999999999999999999999999877 45899999998753
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. .+++.++|++|++.+++.+||.||+.+....+. ...+..++++.++++.+++.+..++. +.+||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHAL-----PMQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 245679999999988889999999998765432 22334456788999999998776655 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GRL 216 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 99999999999999999999999999999999999999999999777999999999975 45667899999975 653
No 87
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.4e-39 Score=367.98 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=179.7
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---cc----cceEEEEccCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---TF----ARISGYCEQNDI 747 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 747 (1252)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... .. ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34569999999999999999999999999999999999987 5699999999986532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illl 827 (1252)
+++.+||+||+.|...+. ....++..+++.++++.+||.+..++. +.+|||||||||+|||||+.+|++|+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986553 234455667899999999998776665 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 828 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
||||++||+.++..+++.++++.++ |+|||++||+++ ++...+|++++|. +|+++..|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 9999999999999999999999754 899999999975 5678899999997 589999998754
No 88
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-39 Score=332.78 Aligned_cols=209 Identities=24% Similarity=0.357 Sum_probs=182.8
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCccc----ccceEEEEccCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT----FARISGYCEQNDIHSP 750 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~ 750 (1252)
+...+++||||++++||++||+||||||||||+|+|+|.++ |++|+|.++|.++.... .+.-++-.+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 45679999999999999999999999999999999999988 56999999999876432 2445788899999999
Q ss_pred CCCHHHHHHHHHHccC--------CC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000853 751 NITVEESVIFSAWLRL--------SP-EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVAN 821 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~--------~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~ 821 (1252)
++||.||+..++..+. +. ....++..+++.++|+.+||.+.+++.. .+||+||||||.|||||+++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----GNLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----hcCChhHhHHHHHHHHHhcC
Confidence 9999999998865331 11 1134566788999999999999999874 48999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 822 PSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 822 p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
|++|+||||.+||.+....++.+.|++++++ |.||+++-|+++ -++..||+++||.. |+++.+|+|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~eV 237 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEEV 237 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHHH
Confidence 9999999999999999999999999999974 799999999987 48899999999975 899999998754
No 89
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=367.16 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=184.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788888876411 013569999999999999999999999999999999999887 46899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ..++.+||++|++.+++.+||+||+.+....+. ...++.++++.++++.+||.+..++. +++||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRY-----PAQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 235679999999998889999999998765432 23344556789999999998776654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
|||||||+|||||+++|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|. +|+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5667899999997 58999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++++
T Consensus 221 ~~g~~~~ 227 (343)
T PRK11153 221 EQGTVSE 227 (343)
T ss_pred EEcCHHH
Confidence 9998643
No 90
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=369.29 Aligned_cols=216 Identities=26% Similarity=0.378 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377888887652 2468999999999999999999999999999999999887 4589999999886
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
... ..++.+||++|++.+++.+||+||+.|....+. ...++.+++++++++.++|.+..++. +.+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 432 234679999999999999999999999865432 23345556789999999998777665 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999975 5778899999997 589999998
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+++
T Consensus 218 ~~~ 220 (369)
T PRK11000 218 PLE 220 (369)
T ss_pred HHH
Confidence 754
No 91
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-38 Score=349.42 Aligned_cols=218 Identities=26% Similarity=0.373 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887663 2459999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.++|.+..++. +.+|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHH
Confidence 432 2345789999999888889999999987543321 0012233445678899999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEec
Confidence 99999999999999999999999999999999999999999865 899999999975 4667899999997 58999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 220 ~~~ 222 (239)
T cd03296 220 TPD 222 (239)
T ss_pred CHH
Confidence 863
No 92
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-38 Score=343.56 Aligned_cols=209 Identities=24% Similarity=0.404 Sum_probs=176.6
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4667776552 2458999999999999999999999999999999999876 468999999987643
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000853 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRL 812 (1252)
Q Consensus 733 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv 812 (1252)
..++.++|++|++.+++.+|++||+.+....+. ....+.++.+.++++.+++.+..++. +.+||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHH
Confidence 345678999999988888999999988765442 22334456788999999998766654 468999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 813 ~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999877899999999975 4667789999997 48887754
No 93
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.8e-38 Score=343.12 Aligned_cols=210 Identities=27% Similarity=0.386 Sum_probs=176.7
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 4677776552 2458999999999999999999999999999999999876 458999999988643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 733 H-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 733 ~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
. ..++.++|++|++.+++..|++||+.+....+. ...++.+++++++++.+++.+..+.. ++.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHH
Confidence 2 234579999999988888999999988754331 22344456788999999998776655 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999864 899999999975 5667789999997 58988875
No 94
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2e-38 Score=350.00 Aligned_cols=205 Identities=27% Similarity=0.390 Sum_probs=173.2
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---c-ccceEEEEccCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T-FARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~~ 752 (1252)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 458999999999999999999999999999999999876 4589999999876432 1 235689999999999999
Q ss_pred CHHHHHHHHHHccCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000853 753 TVEESVIFSAWLRLSPE-------IDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~il 825 (1252)
||+||+.+....+.... ...++..+++.++++.+++.+..++. +++||||||||++|||||+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988754332110 01234456788999999998766554 4689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 826 FMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 826 llDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 228 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-QGRVIAEGTPD 228 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEeecCHH
Confidence 999999999999999999999999877899999999975 5667799999997 48999998863
No 95
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=369.69 Aligned_cols=219 Identities=24% Similarity=0.346 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 377888887652 3569999999999999999999999999999999999887 4689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++.+++.+||+|++.++...+.. .....+..+++++++++.+++.+..++. +++|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 43 34567899999999988999999999886421110 0101223456789999999998877765 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
|||||++|||||+++|++|+|||||+|||+.++.++++.|++++++|+|||+++|+++ ++.+.||++++|. +|++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999975 5668899999997 5899999
Q ss_pred cCCCC
Q 000853 887 GPLGQ 891 (1252)
Q Consensus 887 g~~~~ 891 (1252)
|++++
T Consensus 221 G~~~e 225 (402)
T PRK09536 221 GPPAD 225 (402)
T ss_pred cCHHH
Confidence 99764
No 96
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.3e-38 Score=360.13 Aligned_cols=213 Identities=22% Similarity=0.368 Sum_probs=184.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888887652 3469999999999999999999999999999999999877 56899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ...++.+||++|++.+++.+|+.||+.+.+.++. ...++..++++++++.+||.+..++. ++.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHH
Confidence 3 2346679999999999999999999998876543 22334456688999999999887766 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|. +|++++.|++
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999999965 799999999975 5778899999997 5999999997
Q ss_pred C
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
+
T Consensus 217 ~ 217 (301)
T TIGR03522 217 D 217 (301)
T ss_pred H
Confidence 4
No 97
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.9e-38 Score=347.76 Aligned_cols=213 Identities=24% Similarity=0.358 Sum_probs=179.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4667776552 2469999999999999999999999999999999999877 458999999987542
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 733 H---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 733 ~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. . .++.++|++|++.+++.+|++||+.+....+. ...+...++++++++.+++.+..++. ++.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 1 1 23568999999998899999999988654332 22334455678999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
|||++||+||+.+|++|+|||||+|||+.+++.+.+.|+++.++|+|||++||+++ ++.+.+|++++|. +|++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeC
Confidence 99999999999999999999999999999999999999999877899999999975 6778899999997 589999988
Q ss_pred CC
Q 000853 889 LG 890 (1252)
Q Consensus 889 ~~ 890 (1252)
.+
T Consensus 217 ~~ 218 (232)
T cd03218 217 PE 218 (232)
T ss_pred HH
Confidence 64
No 98
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.3e-38 Score=343.86 Aligned_cols=215 Identities=24% Similarity=0.412 Sum_probs=179.8
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .+...+++|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5678888765321 011269999999999999999999999999999999999877 45899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ..+++.++|++|++.+++.+||+||+.+....+. ...++..++++++++.+++.+..+.. +++||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHH
Confidence 3 2346679999999988888999999988654432 23344556788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999975 56678999999975 8887754
No 99
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.8e-38 Score=346.44 Aligned_cols=214 Identities=26% Similarity=0.327 Sum_probs=177.2
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCC-----CCCeEEEEEEECC
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK-----TGGIIEGDIRIGG 727 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~-----~~~~~~G~i~~~g 727 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4567776542 346999999999999999999999999999999999987 5 5689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.++ .+||+||+.+....+.. ...++.++++.++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23456799999998877 79999999887544321 1122245668899999999876554321 36
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++|. +|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NGR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CCE
Confidence 89999999999999999999999999999999999999999999999876 99999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 218 i~~~g~~~ 225 (227)
T cd03260 218 LVEFGPTE 225 (227)
T ss_pred EEEecCcc
Confidence 99999864
No 100
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.7e-38 Score=383.20 Aligned_cols=216 Identities=29% Similarity=0.434 Sum_probs=180.2
Q ss_pred CcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCe
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 728 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 728 (1252)
...++++|++|.|... +..+|+|+|++|+|||.+||+|+||||||||+|+|+|++. |.+|+|++||.
T Consensus 469 ~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~ 535 (709)
T COG2274 469 QGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGV 535 (709)
T ss_pred CceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 3469999999988532 2369999999999999999999999999999999999988 56999999999
Q ss_pred eCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccC
Q 000853 729 PKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-------LDGIKYSLVGL 798 (1252)
Q Consensus 729 ~~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~ 798 (1252)
|.. ...+|+.+|||+||+.++ +-|++||+.++. ++.+.+ .+.++++..| +..-.++.+|+
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhccccccccccc
Confidence 864 356899999999998775 569999998753 233322 2333343333 34456677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.+ .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.. |+|+|+++|+++ ....+|++++|+
T Consensus 606 ~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~ 681 (709)
T COG2274 606 GG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLD 681 (709)
T ss_pred CC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEcc
Confidence 54 68999999999999999999999999999999999999999999999864 899999999864 678999999997
Q ss_pred cCcEEEEecCCCCc
Q 000853 879 NGGRIIYSGPLGQH 892 (1252)
Q Consensus 879 ~~G~~~~~g~~~~~ 892 (1252)
+|+++++|+.++.
T Consensus 682 -~Gkiv~~gs~~el 694 (709)
T COG2274 682 -QGKIVEQGSHEEL 694 (709)
T ss_pred -CCceeccCCHHHH
Confidence 5999999997543
No 101
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=324.78 Aligned_cols=216 Identities=25% Similarity=0.361 Sum_probs=179.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|++..| ++.++|++|||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 6677777654 44679999999999999999999999999999999999887 45899999999976
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 000853 732 QH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-LDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 732 ~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ..++-++||||....|+.+||+|||..++..+.. ++..+..++++.+.+- |.+.++.+- ..|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCCh
Confidence 43 2456789999999999999999999988654422 1111222667777764 556666553 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.|++++++ |.||+++-+... ...+.+|+.++|. .|++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999966 779999988765 4567889999997 599999
Q ss_pred ecCCCCcc
Q 000853 886 SGPLGQHS 893 (1252)
Q Consensus 886 ~g~~~~~~ 893 (1252)
+|+.++..
T Consensus 218 ~G~~~eL~ 225 (237)
T COG0410 218 SGTAAELL 225 (237)
T ss_pred ecCHHHHh
Confidence 99986543
No 102
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.7e-38 Score=340.56 Aligned_cols=206 Identities=28% Similarity=0.401 Sum_probs=174.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 4677776552 2469999999999999999999999999999999999876 468999999987542
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 733 -HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 733 -~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
...++.++|++|++.+++.+|++||+.+....+. . .+++++++++.+++.+..++. +..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHH
Confidence 2345678999999988889999999988754331 1 134578899999998776654 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999877899999999975 4667789999997 58888765
No 103
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-38 Score=354.79 Aligned_cols=219 Identities=22% Similarity=0.332 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67889988764210 012469999999999999999999999999999999999887 45899999998864
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000853 732 Q-----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD--GIKYSLVGLPGVSG 803 (1252)
Q Consensus 732 ~-----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~~~~~ 803 (1252)
. ...++.+||++|++. .+...||+||+.|..... ....++..+++.++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134678999999974 334689999999875432 234455567789999999996 444443 568
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|.+ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999865 899999999965 46678999999975 89
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|++.
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99999864
No 104
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-38 Score=354.27 Aligned_cols=205 Identities=23% Similarity=0.308 Sum_probs=174.5
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---c----ccceEEEEccCC
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T----FARISGYCEQND 746 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~ 746 (1252)
++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 445679999999999999999999999999999999999887 4589999999875421 1 135789999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000853 747 IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 826 (1252)
Q Consensus 747 ~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~ill 826 (1252)
.+++.+|++||+.+....+. .......+++.++++.++|.+..++. +++||||||||++|||||+.+|++||
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88889999999998754331 22334456788999999998776665 46899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 246 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTPE 246 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCHH
Confidence 99999999999999999999999754 899999999975 4667899999997 58999999864
No 105
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.1e-38 Score=343.08 Aligned_cols=208 Identities=28% Similarity=0.422 Sum_probs=171.9
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++... +.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 4677776653210 01469999999999999999999999999999999999877 468999999987543
Q ss_pred cc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 733 HT-------FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 733 ~~-------~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. .++.++|++|++.+++.+||+||+.+....+. ......+++++++++.+||.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcC
Confidence 11 24579999999988889999999998765432 22233456788999999998766554 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.+|++++|.+ |+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999999999999999999999999999986 5899999999975 34 48999999975 65
No 106
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.5e-38 Score=343.26 Aligned_cols=214 Identities=26% Similarity=0.400 Sum_probs=179.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. +.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 46677765521 11469999999999999999999999999999999999877 468999999987643
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
..+++.++|++|++.+++..|++||+.+....+. ...++..++++++++.++|.+..++. +.+|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHH
Confidence 2345679999999988889999999998765432 22333455688999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ .+.+.+|++++|. +|++++.|+++
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 217 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGSPQ 217 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCCHH
Confidence 99999999999999999999999999999999999999876 699999999975 4667789999997 58999998864
No 107
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-38 Score=349.08 Aligned_cols=206 Identities=29% Similarity=0.386 Sum_probs=171.6
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc------cccceEEEEccCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------TFARISGYCEQNDIHSP 750 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~ 750 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 468999999999999999999999999999999999876 4589999999875421 24567999999998888
Q ss_pred CCCHHHHHHHHHHcc-----CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000853 751 NITVEESVIFSAWLR-----LSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~il 825 (1252)
.+||+||+.+..... .......+...+++.++++.+++.+..+.. +.+|||||||||+||+||+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 899999998753211 000111123345678899999997765554 4689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 826 FMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 826 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|++++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 231 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK-DGRIVFDGPPAE 231 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeecCHHH
Confidence 999999999999999999999999764 899999999976 5666899999997 589999998643
No 108
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=341.26 Aligned_cols=217 Identities=24% Similarity=0.358 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47889998876321 011469999999999999999999999999999999999876 4689999999886
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 731 VQHT------F-ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~~~------~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
.... . ++.++|++|++.+++.+|++||+.+....+. ...++.++++.++++.+||.+..++. +.+
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4321 2 2568999999988889999999998654321 22334456788999999998766554 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ....+|++++|. +|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999999999975 5899999999974 345578888886 589
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998874
No 109
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.3e-37 Score=340.45 Aligned_cols=221 Identities=36% Similarity=0.632 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC-CeEEEEEEECCeeC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 730 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 730 (1252)
+.|+|+++.++.. ...+.+++|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5677887766321 0135799999999999999999999999999999999998751 13589999999886
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNE-VLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
....+++.++|++|++.+++.+|++||+.+............+...+++++ .++.+++.+..++. +++||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544567789999999998999999999998765432221122222334555 88888887766544 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|+|++||++..++.+.+|++++|.+ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999999877899999999974468889999999975 8998765
No 110
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-38 Score=345.97 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .+.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4677777665310 001269999999999999999999999999999999999887 46899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ..++.++|++|++.+++.+|++||+.+....+. ...+...+.+.++++.+++.+..+.. +.+||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 235679999999998889999999988754432 22334456788999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 4667789999997 58999
Q ss_pred EecCC
Q 000853 885 YSGPL 889 (1252)
Q Consensus 885 ~~g~~ 889 (1252)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 99875
No 111
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.5e-38 Score=345.98 Aligned_cols=215 Identities=26% Similarity=0.368 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56778877652 2458999999999999999999999999999999999876 56899999998864
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 732 Q-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 732 ~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
. ..+++.++|++|++.+++.+||.||+.+..... .....++.++++.++++.+|+.+..+.. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 234567999999998888999999998764211 1123344456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 4667789999997 5899999
Q ss_pred cCCC
Q 000853 887 GPLG 890 (1252)
Q Consensus 887 g~~~ 890 (1252)
|+++
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 9864
No 112
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.5e-38 Score=339.77 Aligned_cols=192 Identities=28% Similarity=0.401 Sum_probs=163.5
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCC-CCCCCCHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDI-HSPNITVE 755 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~~tv~ 755 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.....++.++|++|++. .++..|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 468999999999999999999999999999999999877 468999999988644445667999999974 34567999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD 835 (1252)
||+.+...... . ..+++.++++.+++.+..++. +.+||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD----A---GNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC----c---cHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987643221 1 124578899999998776655 46899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 836 ARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 836 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999975 46667999999975 7764
No 113
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-38 Score=354.63 Aligned_cols=220 Identities=21% Similarity=0.314 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... .....+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 77899998874211 012359999999999999999999999999999999999887 45899999986531
Q ss_pred ---------------------------cccccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 000853 732 ---------------------------QHTFARISGYCEQND-IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783 (1252)
Q Consensus 732 ---------------------------~~~~~~~~~~v~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l 783 (1252)
...+++.+||++|++ ..+...||+||+.|+.... ....++.++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123466799999986 3445679999999875432 234455567789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Q 000853 784 QTIELD-GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQ 862 (1252)
Q Consensus 784 ~~~~l~-~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 862 (1252)
+.+||. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 555544 56899999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 863 PSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 863 ~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
++ ++.+.+|++++|. +|++++.|++++
T Consensus 225 ~~-~~~~~adrv~vl~-~G~i~~~g~~~~ 251 (305)
T PRK13651 225 LD-NVLEWTKRTIFFK-DGKIIKDGDTYD 251 (305)
T ss_pred HH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 65 4678899999997 589999998754
No 114
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.2e-37 Score=356.09 Aligned_cols=232 Identities=19% Similarity=0.243 Sum_probs=185.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++............+...+++||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 358899998877532110000001123569999999999999999999999999999999999887 458999999998
Q ss_pred CCcc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 000853 730 KVQH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPG 800 (1252)
Q Consensus 730 ~~~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~ 800 (1252)
+... .+++.++||+|++ .+++.+|+.|++.+...... ...+.++.++++.++++.++|.+ ..++.
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~----- 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY----- 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----
Confidence 6431 2456799999997 57889999999998654331 12344556677889999999943 33433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+.+|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~- 236 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY- 236 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 5789999999999999999999999999999999999999999999999765 899999999975 4556799999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 237 ~G~ive~g~~~~ 248 (331)
T PRK15079 237 LGHAVELGTYDE 248 (331)
T ss_pred CCEEEEEcCHHH
Confidence 589999998654
No 115
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=344.69 Aligned_cols=212 Identities=28% Similarity=0.395 Sum_probs=178.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56778877652 2458999999999999999999999999999999999876 45899999998864
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 732 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
. ..+.++|++|++.+++.+||.||+.+....+. ....+..+++.++++.+++.+..++. +.+||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 23457999999988888999999988654332 22334456788999999998766554 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec-CcEEEEecCC
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGPL 889 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~ 889 (1252)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++...+|++++|.+ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999975 56778999999974 5999998875
No 116
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-37 Score=347.18 Aligned_cols=214 Identities=28% Similarity=0.381 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888887652 2458999999999999999999999999999999999876 45899999998754
Q ss_pred c-----------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 732 Q-----------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 732 ~-----------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
. ...++.++|++|++.+++..|++||+.+...... ....+...+++.++++.+|+.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235678999999988888999999987543211 122334456788999999998766544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|. +
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~ 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD-Q 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 4689999999999999999999999999999999999999999999999877999999999975 5667899999997 5
Q ss_pred cEEEEecCC
Q 000853 881 GRIIYSGPL 889 (1252)
Q Consensus 881 G~~~~~g~~ 889 (1252)
|++++.|++
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899999885
No 117
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-38 Score=353.37 Aligned_cols=219 Identities=23% Similarity=0.323 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... ...+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899988874211 012459999999999999999999999999999999999877 45899999999763
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 Q-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
. ...++.+||++|++. .+...||.||+.|+.... ....++..++++++++.++|. +..++. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999863 333579999999875432 223444556789999999996 445544 56
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|. +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999999999765 899999999975 5677899999997 59
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 223 ~i~~~g~~~ 231 (290)
T PRK13634 223 TVFLQGTPR 231 (290)
T ss_pred EEEEECCHH
Confidence 999999864
No 118
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.7e-38 Score=343.15 Aligned_cols=199 Identities=26% Similarity=0.412 Sum_probs=168.0
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---c-ccceEEEEccCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T-FARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~~ 752 (1252)
+.+++|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 468999999999999999999999999999999999887 4689999999875432 1 245689999999888999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI-ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
|++||+.+....+. ..+..+.+.++++.+ ++.+..++. +++||||||||++|||||+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999998754331 122334566778877 466555544 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 832 SGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|. +|++++.|++
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEeCCH
Confidence 999999999999999999877899999999975 4667899999997 5899998875
No 119
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.3e-38 Score=347.67 Aligned_cols=219 Identities=26% Similarity=0.334 Sum_probs=178.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 45677776542 02469999999999999999999999999999999999877 46899999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 732 Q------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRL-----SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 732 ~------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
. ..+++.++|++|++.+++.+||+||+.+...... ......+..++++.++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999988889999999976421100 00011223356688899999998766554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|.
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~- 220 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK- 220 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-
Confidence 4689999999999999999999999999999999999999999999999754 899999999975 4667899999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 221 ~G~i~~~~~~~~ 232 (243)
T TIGR02315 221 AGEIVFDGAPSE 232 (243)
T ss_pred CCEEEecCCHHH
Confidence 589999998743
No 120
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-36 Score=373.12 Aligned_cols=225 Identities=27% Similarity=0.394 Sum_probs=184.9
Q ss_pred CCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE
Q 000853 645 LPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 724 (1252)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~ 724 (1252)
+......++|+||+++|+.++ +..+|+|+||.|++|+.+||+|||||||||++++|.+.+. |.+|+|+
T Consensus 344 ~~~~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~ 411 (1228)
T KOG0055|consen 344 LSSIKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVL 411 (1228)
T ss_pred ccccccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEE
Confidence 334456799999999997653 4579999999999999999999999999999999999988 5699999
Q ss_pred ECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHH---HHHHHHcCCcccccccccC
Q 000853 725 IGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFV---NEVLQTIELDGIKYSLVGL 798 (1252)
Q Consensus 725 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~g~ 798 (1252)
+||.++.. +..|..+|.|.|+|.+ ...|++||+.|+. ++.+.++..+.. +..--...|.+..++.+|.
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 99998653 4578899999999966 5689999998852 233333222111 1111223456677888988
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.++ +||||||||++|||||+++|+||+||||||+||+++++.++++|++..+ |+|.|+++|+.+ ..+.+|++++|.
T Consensus 486 ~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLS--tIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 486 RGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLS--TIRNADKIAVME 561 (1228)
T ss_pred CCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehh--hhhccCEEEEEE
Confidence 765 5999999999999999999999999999999999999999999998764 999999999875 456799999997
Q ss_pred cCcEEEEecCCCCc
Q 000853 879 NGGRIIYSGPLGQH 892 (1252)
Q Consensus 879 ~~G~~~~~g~~~~~ 892 (1252)
+ |+|++.|+.+|+
T Consensus 562 ~-G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 562 E-GKIVEQGTHDEL 574 (1228)
T ss_pred C-CEEEEecCHHHH
Confidence 5 999999998764
No 121
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=352.02 Aligned_cols=220 Identities=28% Similarity=0.357 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... ...+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889988874210 011359999999999999999999999999999999999887 45899999999863
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 Q-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
. ...++.+||++|++. .+...||.||+.|..... ....++.++++.++++.++|. +..++. ++
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 234667999999862 333469999999875432 223455567789999999995 344433 57
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-KGH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 89999999999999999999999999999999999999999999999877999999999975 4667899999997 589
Q ss_pred EEEecCCCC
Q 000853 883 IIYSGPLGQ 891 (1252)
Q Consensus 883 ~~~~g~~~~ 891 (1252)
+++.|++++
T Consensus 222 i~~~g~~~~ 230 (288)
T PRK13643 222 IISCGTPSD 230 (288)
T ss_pred EEEECCHHH
Confidence 999999754
No 122
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-38 Score=345.24 Aligned_cols=202 Identities=27% Similarity=0.377 Sum_probs=172.7
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~t 753 (1252)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 458999999999999999999999999999999999877 458999999987542 234567899999998888999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG--IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
++||+.+....+. ...+...+.+.++++.+++.+ ..++. +++||||||||++|||||+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988754432 233444567889999999985 44443 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 832 SGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 221 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQVGTPD 221 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999864 899999999975 5677899999997 58999998863
No 123
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=354.86 Aligned_cols=220 Identities=25% Similarity=0.354 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 489999998874211 012459999999999999999999999999999999999887 4589999999875
Q ss_pred Cc-------------------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-
Q 000853 731 VQ-------------------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD- 789 (1252)
Q Consensus 731 ~~-------------------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~- 789 (1252)
.. ..+++.+||++|++. .+...|++||+.|+.... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCCh
Confidence 32 134678999999973 233469999998875322 223445556788999999996
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Q 000853 790 GIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFE 869 (1252)
Q Consensus 790 ~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~ 869 (1252)
+..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+
T Consensus 168 ~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~ 241 (320)
T PRK13631 168 SYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLE 241 (320)
T ss_pred hHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHH
Confidence 444433 5689999999999999999999999999999999999999999999999877999999999865 4667
Q ss_pred HhcceeeeecCcEEEEecCCC
Q 000853 870 AFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 870 ~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
.+|++++|.+ |++++.|+++
T Consensus 242 ~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 242 VADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred hCCEEEEEEC-CEEEEeCCHH
Confidence 8999999974 8999999874
No 124
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-38 Score=307.15 Aligned_cols=200 Identities=28% Similarity=0.409 Sum_probs=177.7
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 756 (1252)
+.+|+|+|++|.+||.++++||||||||||||+++|..+ |..|+|.+||.++....- .-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 459999999999999999999999999999999999988 558999999998754322 2399999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836 (1252)
Q Consensus 757 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~ 836 (1252)
|+.|+.++++ .++.++.+++.+++..+||.+..++. +-+|||||||||.|||||..+|++|+||||.+.||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999999885 45678888999999999999887765 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec-CcEEEEecCC
Q 000853 837 RAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGPL 889 (1252)
Q Consensus 837 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~ 889 (1252)
-+++.++++|-++.+ .|+.++++||+.+ |..-.++++++|+- .|+|+..-++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999875 5999999999976 45557899999973 2788888776
No 125
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.5e-37 Score=337.54 Aligned_cols=206 Identities=27% Similarity=0.361 Sum_probs=173.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56778877652 12469999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. .+++.++|++|++.+++.+|+.||+.+....+. ...+..+++++++++.+++.+..++. +.+||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAF-----PEQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 245679999999988889999999998754432 22334456788999999998765554 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++...+|++++|.+ |
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD-G 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC-C
Confidence 99999999999999999999999999999999999999999999777999999999975 56677899999975 5
No 126
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.6e-37 Score=348.28 Aligned_cols=217 Identities=21% Similarity=0.307 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478889887652 2458999999999999999999999999999999999877 4589999999875
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 731 VQH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
... ..++.++|++|++.+++.+|+.||+.+...... ....+..++++.++++.+++.+..+.. +..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 421 135578999999988888999999988643221 122333445678899999998776654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 5667899999997 5899
Q ss_pred EEecCCCC
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.|++++
T Consensus 223 ~~~g~~~~ 230 (269)
T PRK11831 223 VAHGSAQA 230 (269)
T ss_pred EEeCCHHH
Confidence 99998643
No 127
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=348.37 Aligned_cols=216 Identities=26% Similarity=0.336 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 3788899886631 2358999999999999999999999999999999999877 4589999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++. .++..||.||+.|..... ....++.++++.++++.++|.+..++. +..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCH
Confidence 43 234567999999973 445689999999864322 223344456788999999998776665 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 4567899999997 5899999
Q ss_pred cCCC
Q 000853 887 GPLG 890 (1252)
Q Consensus 887 g~~~ 890 (1252)
|+++
T Consensus 220 g~~~ 223 (274)
T PRK13647 220 GDKS 223 (274)
T ss_pred CCHH
Confidence 9863
No 128
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-37 Score=346.12 Aligned_cols=203 Identities=23% Similarity=0.282 Sum_probs=154.4
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..+.+.+|.+.++. ++-+++.++++.++.-+..+++|+||+||||++|++.|... +..|.+-+.+
T Consensus 361 p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~-- 425 (582)
T KOG0062|consen 361 PNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP-- 425 (582)
T ss_pred CeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--
Confidence 35777777765532 11268899999999999999999999999999999999766 3477776654
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
|.+++|..|...-+..+.|.+-- +..+.+ +... ++.++..+..+||....- ...+.+||||||
T Consensus 426 ------r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la----~~si~~LSGGQK 488 (582)
T KOG0062|consen 426 ------RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF--PGKT----EEEIRRHLGSFGLSGELA----LQSIASLSGGQK 488 (582)
T ss_pred ------cceecchhHhhhhHHHHHhHHHH-HHHHhC--CCCC----HHHHHHHHHhcCCCchhh----hccccccCCcch
Confidence 34789999987655556665533 333333 2222 344678899999976432 222578999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE-EEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI-IYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~-~~~g~ 888 (1252)
-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..||++||+.+ -+-..|+.+.+..+ |++ -.+|.
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt~ieg~ 563 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVTPIEGG 563 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEEeeecc
Confidence 9999999999999999999999999999999999999987 457999999854 35667888888875 555 34554
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
.
T Consensus 564 ~ 564 (582)
T KOG0062|consen 564 I 564 (582)
T ss_pred H
Confidence 3
No 129
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.6e-37 Score=337.51 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=172.8
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 45677765521 2458999999999999999999999999999999999876 458999999987642
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 733 H------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 733 ~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
. .+++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++.+..++. +.+|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCH
Confidence 1 245679999999998899999999998755432 22344456788999999998766554 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.+ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999777999999999975 45567899999975 65
No 130
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=322.65 Aligned_cols=192 Identities=27% Similarity=0.370 Sum_probs=167.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.. .|+.+|||-|.-.+||++||.|||.....+.+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 47899999999999999999999998 999999999987755 368899999999999999999999987665431
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcc--cccccccCCcccccCccccchhHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDI--CADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. ++ +.+.+++++|+.+||+. ..+....+ |||||+|||.+
T Consensus 106 ~------k~----------------------------~i~~r~~ELl~lvgL~p~~~~~RyP~e-----LSGGQQQRVGv 146 (309)
T COG1125 106 D------KE----------------------------RIKKRADELLDLVGLDPSEYADRYPHE-----LSGGQQQRVGV 146 (309)
T ss_pred C------HH----------------------------HHHHHHHHHHHHhCCCHHHHhhcCchh-----cCcchhhHHHH
Confidence 1 00 11345789999999974 45666655 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
||||+.+|+|+++|||+++|||.++.++++-++++.+..++|+++ ++|..+|+++++|||++|++|+++.+++++++..
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivf-VTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF-VTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEE-EecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999998887777655 6788999999999999999999999999999864
No 131
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=342.17 Aligned_cols=206 Identities=22% Similarity=0.311 Sum_probs=176.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999988763 2468999999999999999999999999999999999877 4589999999764
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
. .+++.++|++|++.+++.+||+||+.+.. + . ..++++.++++.++|.+..+.. +.+|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~--~---~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGL--K---G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhcc--c---c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 2 34567899999998888899999998742 1 1 1234578899999998766554 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999975 4667899999997 4899998875
No 132
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.5e-37 Score=339.56 Aligned_cols=212 Identities=27% Similarity=0.422 Sum_probs=177.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 46677776552 2458999999999999999999999999999999999877 45899999998754
Q ss_pred cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 QH--TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~~--~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
.. ..++.++|++|++.+++.+|++||+.+....+ ....++..+.+.++++.+|+.+..++. +.+||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 21 22357899999998888999999998765443 123334456688999999998766554 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ ..+|++++|. +|++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~-~G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLH-RGRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEe-CCeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999975 34 4599999997 589999887
Q ss_pred C
Q 000853 889 L 889 (1252)
Q Consensus 889 ~ 889 (1252)
+
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
No 133
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=350.32 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899988874211 012469999999999999999999999999999999999887 4589999999886
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000853 731 VQ-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 801 (1252)
.. ...++.+||++|++. .+...||.||+.|..... ....++..+++.++++.+||. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 32 135678999999862 233459999999875432 233445566789999999996 555543 5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|. +
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~-~ 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK-E 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 68999999999999999999999999999999999999999999999975 4899999999975 4667899999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|++.
T Consensus 222 G~i~~~g~~~ 231 (286)
T PRK13646 222 GSIVSQTSPK 231 (286)
T ss_pred CEEEEECCHH
Confidence 8999999864
No 134
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=349.92 Aligned_cols=217 Identities=24% Similarity=0.333 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. +.+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 47889998876421 12358999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++. .++..||+||+.|..... ....++..++++++++.+||.+..+.. +.+|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999973 667889999999875432 234445566789999999998776655 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999975 34 6799999997 589999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 99864
No 135
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-37 Score=335.83 Aligned_cols=208 Identities=32% Similarity=0.485 Sum_probs=174.2
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+++|+||++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 4677776552 245899999999999 999999999999999999999877 458999999987542
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
..+++.++|++|++.+++.+|+.||+.+....+. ...++..+.++++++.+++.+..++. +.+|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHH
Confidence 2345678999999988889999999998765432 22233456688999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|. +|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999999999999999999999999976 599999999975 4556789999997 48888765
No 136
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=342.71 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67778877652 2469999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 QH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.. ..++.++|++|++.+++.+|+.||+.+....+. ....++.+++++++++.+++.+..+.. ++.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 135679999999988888999999987643321 122334456788999999998765544 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEeeC
Confidence 999999999999999999999999999999999999999999877999999999975 5778899999997 58999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 220 ~~~ 222 (241)
T PRK10895 220 TPT 222 (241)
T ss_pred CHH
Confidence 864
No 137
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-37 Score=333.80 Aligned_cols=226 Identities=22% Similarity=0.327 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC-C--CeEEEEEEECCe
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT-G--GIIEGDIRIGGY 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~--~~~~G~i~~~g~ 728 (1252)
++.+|++.++.... +...+++||||++++||++||+|.|||||||+.++|.|.++ + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 46677777665421 23569999999999999999999999999999999999876 2 246799999999
Q ss_pred eCCc---c---c-ccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 729 PKVQ---H---T-FARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 729 ~~~~---~---~-~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
++.. + + +.+.+++++|++ .+.|.+|+.+.+.-....+.... ..++..+++.++|+.+|+.+..... +.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~--~~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRL--KS 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHH--hh
Confidence 7532 1 1 235799999997 56788999998876655432111 3456677899999999998753222 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.+.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.|+|++|||+. -+.+.+|++.||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 4789999999999999999999999999999999999999999999999986 5999999999986 4788999999998
Q ss_pred cCcEEEEecCCCC
Q 000853 879 NGGRIIYSGPLGQ 891 (1252)
Q Consensus 879 ~~G~~~~~g~~~~ 891 (1252)
.|++|+.|++++
T Consensus 229 -aG~iVE~g~~~~ 240 (316)
T COG0444 229 -AGRIVEEGPVEE 240 (316)
T ss_pred -CcEEEEeCCHHH
Confidence 599999999754
No 138
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.2e-37 Score=342.24 Aligned_cols=215 Identities=26% Similarity=0.342 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCe---EEEEEEECCe
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGGY 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~i~~~g~ 728 (1252)
++++|+++.++ ++.+++|+||+|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788877653 2358999999999999999999999999999999999876321 2899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000853 729 PKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD----GIKYSLVGLP 799 (1252)
Q Consensus 729 ~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g~~ 799 (1252)
++.. ...++.++|++|++.+++ .|++||+.+....+. ....++..+.+.++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999988887 999999998754432 122344456788999999997 444433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~- 217 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY- 217 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE-
Confidence 568999999999999999999999999999999999999999999999977 589999999975 4667899999997
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 218 ~G~i~~~~~~~ 228 (247)
T TIGR00972 218 DGELVEYGPTE 228 (247)
T ss_pred CCEEEEeCCHH
Confidence 48999999863
No 139
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.9e-37 Score=335.97 Aligned_cols=209 Identities=24% Similarity=0.297 Sum_probs=174.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56778877652 12468999999999999999999999999999999999877 46899999998753
Q ss_pred c---c---cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q---H---TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~---~---~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. . .+++.++|++|++.+++..|++||+.+....+. ...++..++++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 2 1 145678999999988889999999988754431 23334455678899999998766554 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++...+|++++|.+ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999999777899999999975 46667899999975 7764
No 140
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=348.38 Aligned_cols=217 Identities=27% Similarity=0.369 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 5889999987631 2459999999999999999999999999999999999877 4689999999886
Q ss_pred Cc-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 731 VQ-----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~-----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
.. ..+++.+||++|++. .+...|++||+.+..... ..+.++..++++++++.++|.+..++. ++.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 235677999999974 335689999998865322 223444456789999999998776655 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|.+ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999975 45568999999975 899
Q ss_pred EEecCCCC
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.|++++
T Consensus 221 ~~~g~~~~ 228 (283)
T PRK13636 221 ILQGNPKE 228 (283)
T ss_pred EEeCCHHH
Confidence 99998743
No 141
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=359.79 Aligned_cols=204 Identities=23% Similarity=0.303 Sum_probs=175.9
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc---c----ccceEEEEccCCCC
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH---T----FARISGYCEQNDIH 748 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~ 748 (1252)
...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++... . .++.+||++|++.+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3458999999999999999999999999999999999887 4589999999986431 1 23579999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000853 749 SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 828 (1252)
Q Consensus 749 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlD 828 (1252)
++.+||+||+.+....+. ...++.++++.++++.++|.+..++. +++|||||||||+|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999999865442 23344556788999999998776655 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 829 EPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 829 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++...+|++++|. +|++++.|++++
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~-~G~i~~~g~~~~ 251 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQ-NGEVVQVGTPDE 251 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEE-CCEEEecCCHHH
Confidence 99999999999999999999975 4899999999975 5667899999997 589999998654
No 142
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.2e-37 Score=336.15 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=172.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4677776652 2458999999999999999999999999999999999877 458999999987632
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 733 -----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 733 -----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
..+++.++|++|++.+++.+|+.||+.+...... ....++..+++.++++.+++.+..++. +.+||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHH
Confidence 2346679999999988888999999988643111 122334456788999999998766554 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877899999999975 56678999999975 65
No 143
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=309.69 Aligned_cols=218 Identities=26% Similarity=0.401 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++.+|++|+.. .+.+|++||++++|||++||+||||||||||||.|+|... +.+|++.+||.+..
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56678888763 4679999999999999999999999999999999999887 45899999999865
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. .+..+..+..||+..+-+..||+|-+.++..-.. ......+..+.++++|...++.+.+.+. ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 3 3445566999999988788999999998753221 1122234455688899999998887654 36899999
Q ss_pred HHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 809 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 809 rqrv~ia~al~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||.+||.|+. ++++|+||||||.||...+..++++.++++++|..|+++-||.+. ...++|++++|. +|+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999986 346899999999999999999999999999999999999999875 567788888887 599
Q ss_pred EEEecCCCCc
Q 000853 883 IIYSGPLGQH 892 (1252)
Q Consensus 883 ~~~~g~~~~~ 892 (1252)
++..|++.+.
T Consensus 219 v~a~g~p~~v 228 (259)
T COG4559 219 VIASGSPQDV 228 (259)
T ss_pred EeecCCHHHh
Confidence 9999998653
No 144
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=343.54 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 378889887663 2459999999999999999999999999999999999877 4589999999875
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccc-
Q 000853 731 VQ----------------HTFARISGYCEQNDIHSPNITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQTIELDGIK- 792 (1252)
Q Consensus 731 ~~----------------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 792 (1252)
.. ..+++.++|++|++.+++.+|++||+.++.. .+ ....+..++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1345679999999998888999999987542 22 123344456788999999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhc
Q 000853 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 872 (1252)
Q Consensus 793 ~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 872 (1252)
+.. +.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 332 4689999999999999999999999999999999999999999999999877999999999975 4566789
Q ss_pred ceeeeecCcEEEEecCCC
Q 000853 873 DLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 873 ~~~~l~~~G~~~~~g~~~ 890 (1252)
++++|. +|++++.|+.+
T Consensus 221 ~i~~l~-~G~i~~~~~~~ 237 (257)
T PRK10619 221 HVIFLH-QGKIEEEGAPE 237 (257)
T ss_pred EEEEEE-CCEEEEeCCHH
Confidence 999997 48999998863
No 145
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.9e-37 Score=338.17 Aligned_cols=217 Identities=24% Similarity=0.323 Sum_probs=172.1
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .....+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5677887765311 001258999999999999999999999999999999999876 45899999998764
Q ss_pred c------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 Q------HTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~------~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
. ..+++.++|++|++ .+++.+|++||+.+........ ...+..++.++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 4567899999998865433211 11111122235788999985 444443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY-AG 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999865 899999999975 4556899999997 58
Q ss_pred EEEEec
Q 000853 882 RIIYSG 887 (1252)
Q Consensus 882 ~~~~~g 887 (1252)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
No 146
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=348.50 Aligned_cols=220 Identities=25% Similarity=0.334 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888887763210 002469999999999999999999999999999999999887 4699999999876
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000853 731 VQ-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~ 801 (1252)
.. ...++.+||++|++. .+..+||.||+.+....+ ....++..++++++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 124567999999973 333689999998865432 123445556789999999996 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|. +|
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-HG 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 689999999999999999999999999999999999999999999999877999999999975 4667899999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13641 222 KLIKHASPK 230 (287)
T ss_pred EEEEeCCHH
Confidence 999999864
No 147
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.2e-37 Score=334.52 Aligned_cols=211 Identities=24% Similarity=0.378 Sum_probs=172.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4677887766321 012469999999999999999999999999999999999877 45899999998754
Q ss_pred cc---c---cc-ceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 732 QH---T---FA-RISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 732 ~~---~---~~-~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+++.++++.+|+.+..++. +..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHR-----PSEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 21 1 22 568999999988888999999988654331 12233445678999999998766554 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ..+.+|++++|.+ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--~~~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE--LAKKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999975 3456899999974 776
Q ss_pred E
Q 000853 884 I 884 (1252)
Q Consensus 884 ~ 884 (1252)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
No 148
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-38 Score=330.23 Aligned_cols=203 Identities=24% Similarity=0.301 Sum_probs=183.5
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---c---c-ccceEEEEccCCCCCC
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---H---T-FARISGYCEQNDIHSP 750 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~-~~~~~~~v~q~~~~~~ 750 (1252)
.-++|+||+|+.||++.|||-||||||||+++|.++.. |+.|+|+++|.++.. . . .++.+++|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 45889999999999999999999999999999999887 569999999998643 1 2 3567899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
..||.||..|+..+++ .+++++++++.+.|+.+||.+..+.. +++|||||||||.+||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 9999999999988874 45678889999999999999998876 679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 831 TSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
+|.|||--+.++++-|.++.++ ++|||++|||.+ |....-||+.+|. +|+++..|++++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~eI 252 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEEI 252 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHHH
Confidence 9999999999999999998755 899999999987 6778889999996 6999999999764
No 149
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-37 Score=299.09 Aligned_cols=198 Identities=26% Similarity=0.391 Sum_probs=172.5
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc------c-ccceEEEEccCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH------T-FARISGYCEQNDI 747 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~ 747 (1252)
+...||++|++.|++||.+||+|||||||||||-+|+|+.. +.+|+|.+.|++.... . ..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 45679999999999999999999999999999999999877 4599999999985431 1 3467999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illl 827 (1252)
+.|++|..||+.....++.... .+..+...+.|+.+||.+..+.. +.+|||||+|||+||||+...|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999999988886422 23345578899999998876654 579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 828 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||-+||..+...|.+++-.+.+ .|.|.|++|||| .+...|+|.+-|.+ |+++.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeec-ceecc
Confidence 999999999999999999999875 499999999997 46789999999975 88875
No 150
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-37 Score=339.94 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67888887653 2459999999999999999999999999999999999876 46899999998752
Q ss_pred c---------ccccceEEEEccCCCCCCCCCHHHHHHHH-HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 732 Q---------HTFARISGYCEQNDIHSPNITVEESVIFS-AWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 732 ~---------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
. ...++.++|++|++.+++.+|+.||+.+. ...+ ....++..+++.+.++.+|+.+..+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----P 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----h
Confidence 0 12456789999999988899999999753 2222 122333456688999999998766654 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~-~g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME-NG 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CC
Confidence 689999999999999999999999999999999999999999999999877999999999975 4567799999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 218 ~i~~~~~~~ 226 (242)
T PRK11124 218 HIVEQGDAS 226 (242)
T ss_pred EEEEeCCHH
Confidence 999999864
No 151
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=339.63 Aligned_cols=214 Identities=21% Similarity=0.346 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478899887652 2469999999999999999999999999999999999877 4689999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000853 731 VQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTI-ELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~g~~~~~~lS 805 (1252)
... ..++.++|++|++.+++.+||.||+.+..... ..++..+.++++++.+ ++.+..+.. ++.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 23567999999998888899999998864221 1122334566777777 465544443 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 57788999999974 89999
Q ss_pred ecCCCC
Q 000853 886 SGPLGQ 891 (1252)
Q Consensus 886 ~g~~~~ 891 (1252)
.|++++
T Consensus 218 ~~~~~~ 223 (237)
T PRK11614 218 EDTGDA 223 (237)
T ss_pred eCCHHH
Confidence 998754
No 152
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9e-37 Score=333.38 Aligned_cols=198 Identities=24% Similarity=0.374 Sum_probs=170.9
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 756 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ++.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 468999999999999999999999999999999999876 56899999998764332 246899999998888899999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836 (1252)
Q Consensus 757 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~ 836 (1252)
|+.+....+. .. ++++.++++.+++.+..+.. +..||||||||++||||++.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654432 11 23577889999998766654 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 837 RAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 837 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|++.+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 210 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChhh
Confidence 9999999999999877899999999975 4667899999997 589999998754
No 153
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.1e-37 Score=334.32 Aligned_cols=193 Identities=28% Similarity=0.415 Sum_probs=163.0
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC-CCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI-HSPNI 752 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~~ 752 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.. ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999877 458999999987542 234567899999974 35678
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTs 832 (1252)
|++||+.+....+. ......++++.++++.+++.+..++. +..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999988654321 22333445688899999998665554 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-G 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-C
Confidence 99999999999999999877999999999975 45667999999975 5
No 154
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=356.91 Aligned_cols=216 Identities=27% Similarity=0.464 Sum_probs=182.7
Q ss_pred CCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECC
Q 000853 648 EPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG 727 (1252)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g 727 (1252)
+++.+..+|+++.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +++|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 4566777899988753 2379999999999999999999999999999999999987 4699999999
Q ss_pred eeCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccC
Q 000853 728 YPKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK------YSLVGL 798 (1252)
Q Consensus 728 ~~~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~g~ 798 (1252)
.+.. ...++++++||+|+|.+++ -|++||+.++. ++.+ ++.+.++++..+|.+.. |+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8753 4578999999999998765 59999998752 1222 34567788888776554 455554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
. .++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++ .....+|+|++|+
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld 528 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLD 528 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEec
Confidence 4 478999999999999999999999999999999999999999999999987 69999999985 4567899999997
Q ss_pred cCcEEEEecCCCCc
Q 000853 879 NGGRIIYSGPLGQH 892 (1252)
Q Consensus 879 ~~G~~~~~g~~~~~ 892 (1252)
+|++++.|..++.
T Consensus 529 -~G~l~~~g~~~~L 541 (559)
T COG4988 529 -NGRLVEQGTHEEL 541 (559)
T ss_pred -CCceeccCCHHHH
Confidence 5999999997654
No 155
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-37 Score=344.66 Aligned_cols=216 Identities=27% Similarity=0.380 Sum_probs=181.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678888876631 2358999999999999999999999999999999999877 56999999998764
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 Q---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
. ...++.++|++|++. .+...||.||+.+..... ....+..+++++++++.++|.+..++. ++.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHH
Confidence 3 234567899999974 344689999998765432 233444556788999999998776665 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999865 899999999975 56678999999974 899999
Q ss_pred cCCCC
Q 000853 887 GPLGQ 891 (1252)
Q Consensus 887 g~~~~ 891 (1252)
|++++
T Consensus 220 g~~~~ 224 (277)
T PRK13652 220 GTVEE 224 (277)
T ss_pred CCHHH
Confidence 98743
No 156
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-38 Score=330.52 Aligned_cols=190 Identities=26% Similarity=0.343 Sum_probs=165.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+.+|+|+||||||||+++|.++-.|+ +|+|.++|.+++... .|+.+|+++|+..++...||.||+.|..++
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 46899999999999999999999998 999999998876543 257799999999999999999999998876
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. ++ +...++.++|+..||++..+....+ |||||||||+
T Consensus 111 ag~~------k~----------------------------ei~~RV~elLelVgL~dk~~~yP~q-----LSGGQKQRVa 151 (339)
T COG1135 111 AGVP------KA----------------------------EIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVA 151 (339)
T ss_pred cCCC------HH----------------------------HHHHHHHHHHHHcCChhhhccCchh-----cCcchhhHHH
Confidence 5321 00 1123578899999999999988766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||||+.+|+||++|||||+|||.+...|.+.|+++.++.|-|+++. +|-++-+.+.||||.||++|++++.|+..++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlI-THEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLI-THEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999999999998877776654 5556678889999999999999999998876
No 157
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-37 Score=341.28 Aligned_cols=219 Identities=24% Similarity=0.295 Sum_probs=177.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899987652 245899999999999999999999999999999999987531 3689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ...+..+++++++++.+++.+...... +..+.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 153 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRL-KSPAL 153 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhh-cCChh
Confidence 87532 134567999999988777 899999998754331 223344456888999998843211111 12246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 154 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 230 (258)
T PRK14268 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL-MGE 230 (258)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999965 799999999975 4667799999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 231 i~~~~~~~ 238 (258)
T PRK14268 231 LIEFGQTR 238 (258)
T ss_pred EEEeCCHH
Confidence 99999863
No 158
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=343.86 Aligned_cols=214 Identities=25% Similarity=0.335 Sum_probs=179.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788877652 12459999999999999999999999999999999999877 46899999998764
Q ss_pred c----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 732 Q----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 732 ~----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
. ...++.+||++|++. .++..|+.||+.+..... ....++.+++++++++.++|.+..++. ++.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCH
Confidence 2 234567999999975 356789999998865432 123444556788999999998776654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|.|||++||+++ ++ ..+|++++|. +|++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 34 6799999997 4899999
Q ss_pred cCCC
Q 000853 887 GPLG 890 (1252)
Q Consensus 887 g~~~ 890 (1252)
|+++
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 9864
No 159
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.4e-37 Score=340.98 Aligned_cols=214 Identities=25% Similarity=0.308 Sum_probs=179.0
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5677777652 2458999999999999999999999999999999999877 458999999987532
Q ss_pred ----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000853 733 ----------------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 733 ----------------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 796 (1252)
..+++.++|++|++.+++..|+.||+.++.... .....+..++.+.++++.+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 124567999999998888999999998753211 1123344456788999999998766554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhccee
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 797 g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 875 (1252)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|+++
T Consensus 144 ----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T TIGR03005 144 ----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVC 218 (252)
T ss_pred ----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 4689999999999999999999999999999999999999999999998765 899999999975 5667899999
Q ss_pred eeecCcEEEEecCCC
Q 000853 876 LMKNGGRIIYSGPLG 890 (1252)
Q Consensus 876 ~l~~~G~~~~~g~~~ 890 (1252)
+|. +|++++.|+.+
T Consensus 219 ~l~-~G~i~~~g~~~ 232 (252)
T TIGR03005 219 FFD-KGRIVEQGKPD 232 (252)
T ss_pred EEE-CCEEEEeCCHH
Confidence 997 58999998863
No 160
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-37 Score=340.10 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=179.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECCe
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGGY 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 728 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887652 245899999999999999999999999999999999987532 36899999998
Q ss_pred eCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 729 PKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 729 ~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
++.. ..+++.+||++|++.+++.+||.||+.+....+.. ....++..+.+.++++.++|.+...... +..+.+||
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 148 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLS 148 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCC
Confidence 7642 24566799999999888899999999987543211 1122344567889999999864211111 12256899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 149 gG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 225 (250)
T PRK14247 149 GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY-KGQIVE 225 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999865 899999999975 4667899999997 589999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 226 ~g~~~ 230 (250)
T PRK14247 226 WGPTR 230 (250)
T ss_pred ECCHH
Confidence 99864
No 161
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=341.31 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67788887653 2468999999999999999999999999999999999876 46899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. ..+++.++|++|++.+++.+||+||+.+...... ...+..++.++++++.+++.+..++. +..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHH
Confidence 2 2345678999999888788999999988643221 11223345678899999998766655 46899999
Q ss_pred HHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 809 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 809 rqrv~ia~al~------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
||||+||+||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++...+|++++|. +|
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-QG 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-CC
Confidence 99999999999 5999999999999999999999999999997 56899999999975 4667899999997 58
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|++++
T Consensus 218 ~i~~~~~~~~ 227 (258)
T PRK13548 218 RLVADGTPAE 227 (258)
T ss_pred EEEeeCCHHH
Confidence 9999988643
No 162
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-37 Score=340.33 Aligned_cols=216 Identities=24% Similarity=0.285 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988663 245899999999999999999999999999999999987642 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD----GIKYSLVGL 798 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~g~ 798 (1252)
.++.. ...++.++|++|++.++ .+||+||+.+....+. ....+..++++.++++.+++. +..++
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT---- 146 (254)
T ss_pred EecccccccHHHHhhceEEEeeccccc-cCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC----
Confidence 87532 23466799999998776 4899999998754321 112333456688889998874 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.+++||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 147 -~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 147 -NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 2578999999999999999999999999999999999999999999999964 799999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 000853 879 NGGRIIYSGPLG 890 (1252)
Q Consensus 879 ~~G~~~~~g~~~ 890 (1252)
+|+++..|++.
T Consensus 224 -~G~i~~~g~~~ 234 (254)
T PRK14273 224 -NGCIEEESSTD 234 (254)
T ss_pred -CCEEEEeCCHH
Confidence 58999999863
No 163
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-37 Score=343.99 Aligned_cols=214 Identities=24% Similarity=0.346 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788877652 2459999999999999999999999999999999999887 46899999998863
Q ss_pred c-----ccccceEEEEccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q-----HTFARISGYCEQNDIH-SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~-----~~~~~~~~~v~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. ...++.++|++|++.. +...|+.||+.+....+ ....++..+++.++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1345679999999753 34568999998865432 123334455688899999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877899999999975 4667899999997 489999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 99864
No 164
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-36 Score=328.27 Aligned_cols=203 Identities=21% Similarity=0.301 Sum_probs=157.9
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..+.++||++.++ ++++++++++|-|.--..++|+||||.||||||++|.|.+. |..|+..-|
T Consensus 585 PvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn--- 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN--- 647 (807)
T ss_pred CeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc---
Confidence 3577788887653 35678999999999999999999999999999999999887 446776433
Q ss_pred CCcccccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 730 KVQHTFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.+-++|+..|+. .+....|+-|.|.-. .+ .+. +.....|..+||...++++- +..||||
T Consensus 648 -----hrL~iG~FdQh~~E~L~~Eetp~EyLqr~----FN--lpy----q~ARK~LG~fGL~sHAHTik----ikdLSGG 708 (807)
T KOG0066|consen 648 -----HRLRIGWFDQHANEALNGEETPVEYLQRK----FN--LPY----QEARKQLGTFGLASHAHTIK----IKDLSGG 708 (807)
T ss_pred -----ceeeeechhhhhHHhhccccCHHHHHHHh----cC--CCh----HHHHHHhhhhhhhhccceEe----eeecCCc
Confidence 233689988875 344566777776522 11 222 22566789999998888762 5789999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||-||++|.--++.|+||||||||++||.++...+-+.|+++ ...||++|||-.+ +.+.-|.+.|+.+.|.-.-.|
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdG 784 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDG 784 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccc
Confidence 999999999999999999999999999999999999999987 4579999998653 556667888887766545556
Q ss_pred CCCCc
Q 000853 888 PLGQH 892 (1252)
Q Consensus 888 ~~~~~ 892 (1252)
..++.
T Consensus 785 dFeDY 789 (807)
T KOG0066|consen 785 DFEDY 789 (807)
T ss_pred cHHHH
Confidence 65433
No 165
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-37 Score=346.05 Aligned_cols=190 Identities=27% Similarity=0.420 Sum_probs=169.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcccc-ceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQ-KTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~-~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
++|+|||||||||||++|+|+.+|+ +|+|.++|.++++..++ +.+|+|+|+..++|++||+|||.|+.+.++...
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k- 107 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK- 107 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch-
Confidence 6899999999999999999999997 99999999999987764 679999999999999999999999987654210
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
+ +.+.+++++.+.|+|.+..|++... |||||||||+|||||+
T Consensus 108 -----~----------------------------ei~~rV~eva~~L~l~~lL~r~P~~-----LSGGQrQRVAlaRAlV 149 (338)
T COG3839 108 -----A----------------------------EIDKRVKEVAKLLGLEHLLNRKPLQ-----LSGGQRQRVALARALV 149 (338)
T ss_pred -----H----------------------------HHHHHHHHHHHHcCChhHHhcCccc-----CChhhHHHHHHHHHHh
Confidence 0 1134578899999999999998765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
++|++++||||+|.||+..+..+...++++.+..+.|+| .++|+..|+..++|||++|++|++...|++.++.
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~I-YVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTI-YVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEE-EEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 999999999999999999999999999998876665554 4678888999999999999999999999999884
No 166
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.7e-37 Score=335.16 Aligned_cols=199 Identities=26% Similarity=0.427 Sum_probs=163.8
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITV 754 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~~tv 754 (1252)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.++|++|++.+. +..|+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 458999999999999999999999999999999999876 45899999998653 3456789999998653 34899
Q ss_pred HHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 755 EESVIFSAWLRLSP-EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
+||+.+....+... ....+..+++++++++.+++.+..++. +.+||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 011123345688999999998766554 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 834 LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877899999999975 56677899999964 5 66654
No 167
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=342.15 Aligned_cols=217 Identities=27% Similarity=0.357 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 4789999887632 12459999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+++.++++.+||.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCH
Confidence 43 234567999999973 667789999998875433 123444556789999999998877665 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|. +|++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999975 34 5699999997 589999
Q ss_pred ecCCCC
Q 000853 886 SGPLGQ 891 (1252)
Q Consensus 886 ~g~~~~ 891 (1252)
.|++++
T Consensus 221 ~g~~~~ 226 (279)
T PRK13635 221 EGTPEE 226 (279)
T ss_pred ECCHHH
Confidence 998643
No 168
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=348.37 Aligned_cols=225 Identities=17% Similarity=0.237 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--CeEEEEEEECCee
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGYP 729 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~~ 729 (1252)
++++|+++.++.. .+...+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888876421 1124699999999999999999999999999999999998753 1468999999998
Q ss_pred CCcc---c----ccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 730 KVQH---T----FARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 730 ~~~~---~----~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
+... . .++.++|++|++ .+.+.+|+.+++........ ....++.++++.++++.+||.+..+.. ...
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l--~~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRL--DVY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHH--hCC
Confidence 6431 1 224699999998 46788999998876544321 223455567889999999997532111 123
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+++|||||||||+|||||+.+|++|++||||+|||+.++.++++.|+++.+ .|.|+|++||+++ .+.+.+|++++|.
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~- 228 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY- 228 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 579999999999999999999999999999999999999999999999986 4899999999975 4567899999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 229 ~G~ive~g~~~~ 240 (326)
T PRK11022 229 AGQVVETGKAHD 240 (326)
T ss_pred CCEEEEECCHHH
Confidence 599999998754
No 169
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-37 Score=339.87 Aligned_cols=222 Identities=25% Similarity=0.277 Sum_probs=179.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478889887663 245899999999999999999999999999999999987642 3589999999
Q ss_pred eeCC--c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKV--Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~--~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++. . ..+++.++|++|++.+++.+|+.||+.+....+.. ....+..++.++++++.+++........ +..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 148 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRL-NDYPS 148 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhh-ccChh
Confidence 8764 1 23456799999999888899999999887543311 1123334456788999998853211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|. +|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~G~ 225 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY-LGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999975 699999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 226 i~~~~~~~ 233 (253)
T PRK14267 226 LIEVGPTR 233 (253)
T ss_pred EEEeCCHH
Confidence 99999864
No 170
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-37 Score=340.86 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=179.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478889887652 2469999999999999999999999999999999999877 5689999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000853 731 VQH---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLS----------P--EIDLKTKAEFVNEVLQTIELDGIKYS 794 (1252)
Q Consensus 731 ~~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~----------~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 794 (1252)
... . .+..++|++|++.+++.+|++||+.+....... . .....+..+.+.+.++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 432 1 234589999999999999999999986431100 0 00112234567888999999776655
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcc
Q 000853 795 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDD 873 (1252)
Q Consensus 795 ~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 873 (1252)
. +++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 4 4689999999999999999999999999999999999999999999999875 899999999975 56678999
Q ss_pred eeeeecCcEEEEecCCCC
Q 000853 874 LILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 874 ~~~l~~~G~~~~~g~~~~ 891 (1252)
+++|. +|++++.|++++
T Consensus 224 i~~l~-~g~i~~~~~~~~ 240 (255)
T PRK11300 224 IYVVN-QGTPLANGTPEE 240 (255)
T ss_pred EEEEE-CCeEEecCCHHH
Confidence 99997 589999998643
No 171
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.8e-37 Score=337.72 Aligned_cols=216 Identities=26% Similarity=0.332 Sum_probs=178.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56788877552 2458999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 732 QH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-----PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.. ..++.++|++|++.+++.+|++||+.+....... .....+..+++++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 31 1234699999999999999999999886432100 0011233455688999999998766654 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|. +|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QGS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CCe
Confidence 8999999999999999999999999999999999999999999999976 799999999975 4667899999997 489
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 220 ~~~~~~~~ 227 (242)
T TIGR03411 220 VLAEGSLD 227 (242)
T ss_pred EEeeCCHH
Confidence 99999864
No 172
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.2e-37 Score=353.48 Aligned_cols=206 Identities=22% Similarity=0.314 Sum_probs=176.9
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee----CCc---cc---c-cceEEEEc
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP----KVQ---HT---F-ARISGYCE 743 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~----~~~---~~---~-~~~~~~v~ 743 (1252)
+...+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+ +.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45678999999999999999999999999999999999887 568999999963 211 11 2 25799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000853 744 QNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS 823 (1252)
Q Consensus 744 q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~ 823 (1252)
|++.+++.+||+||+.|+...+. ...++..+++.++++.+||.+..+.. +.+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999865432 23455567789999999998877665 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 824 IIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 824 illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
||+|||||+|||+.++..+++.|+++.++ ++|||++||+++ ++.+.+|++++|. +|+++..|++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~ei 252 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPEEI 252 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHHHH
Confidence 99999999999999999999999999865 899999999975 5678899999997 5899999997543
No 173
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-37 Score=330.28 Aligned_cols=194 Identities=27% Similarity=0.389 Sum_probs=164.1
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEESVIF 760 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~ 760 (1252)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999887 4589999999876432 234679999999998889999999987
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000853 761 SAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 840 (1252)
Q Consensus 761 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~ 840 (1252)
....+. .. .+..++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++++|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 123345688999999998766655 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 841 IVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 841 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
.+++.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 999999999754 899999999975 4667799999997 48887654
No 174
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=347.40 Aligned_cols=227 Identities=22% Similarity=0.253 Sum_probs=184.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++.+....... ...+.+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478899988775321100 00113469999999999999999999999999999999999877 4589999999886
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000853 731 VQH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 801 (1252)
... .+++.++|++|++ .+.+.+|+.+++........ ....++.++++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 3456799999998 57788999999987654321 2334455677899999999963 33433 5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
++|||||||||+|||||+.+|++||+||||+|||..++..+++.|+++.++ |.|||++||+++ .+...+|++++|. +
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~ 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-L 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 799999999999999999999999999999999999999999999999764 999999999865 4556789999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 231 G~ive~g~~~~ 241 (327)
T PRK11308 231 GRCVEKGTKEQ 241 (327)
T ss_pred CEEEEECCHHH
Confidence 99999998754
No 175
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=339.51 Aligned_cols=222 Identities=22% Similarity=0.310 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377888887663 245899999999999999999999999999999999987532 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+++++++++.+++.+...... ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGG 147 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcc
Confidence 87531 2345679999999988889999999988754332 1123344567888999998842111111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee----
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK---- 878 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~---- 878 (1252)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~ 225 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEAT 225 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccC
Confidence 8999999999999999999999999999999999999999999999964 689999999975 5667899999997
Q ss_pred -cCcEEEEecCCC
Q 000853 879 -NGGRIIYSGPLG 890 (1252)
Q Consensus 879 -~~G~~~~~g~~~ 890 (1252)
++|++++.|+++
T Consensus 226 ~~~g~i~~~~~~~ 238 (258)
T PRK14241 226 GKPGRLVEIDDTE 238 (258)
T ss_pred CCCceEEecCCHH
Confidence 359999999863
No 176
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-36 Score=347.50 Aligned_cols=226 Identities=20% Similarity=0.296 Sum_probs=183.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 729 (1252)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48899998876431 12346999999999999999999999999999999999987641 138999999998
Q ss_pred CCc---cc---cc-ceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 730 KVQ---HT---FA-RISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 730 ~~~---~~---~~-~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
+.. .. ++ +.++|++|++ .+.+.+|+.+++........ ....++..+++.++++.++|.+..+. . ...
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCC
Confidence 643 11 22 4799999998 57789999999987654432 23445556778899999999753322 1 233
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+++|||||||||+|||||+.+|++||+||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+...+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 6799999999999999999999999999999999999999999999999865 899999999975 4556899999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 237 ~G~ive~g~~~~ 248 (330)
T PRK09473 237 AGRTMEYGNARD 248 (330)
T ss_pred CCEEEEECCHHH
Confidence 599999999754
No 177
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.5e-37 Score=335.09 Aligned_cols=212 Identities=23% Similarity=0.327 Sum_probs=173.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 4677776552 2469999999999999999999999999999999999887 468999999987543
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHH
Q 000853 733 H----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-LDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 733 ~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~g~~~~~~lSgG 807 (1252)
. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+...++++.++ +.+..++. +++||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHH
Confidence 1 124578999999998888999999988754331 11 1233566777775 44444443 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++. +|++++.
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999864 899999999975 4666789999997 5899999
Q ss_pred cCCCCc
Q 000853 887 GPLGQH 892 (1252)
Q Consensus 887 g~~~~~ 892 (1252)
|+.++.
T Consensus 214 ~~~~~~ 219 (230)
T TIGR03410 214 GAGDEL 219 (230)
T ss_pred CCHHHc
Confidence 987543
No 178
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.1e-36 Score=341.00 Aligned_cols=225 Identities=23% Similarity=0.310 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++.....+ ..+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67888888764210000 0113569999999999999999999999999999999999877 46899999998764
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 QH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
.. .+++.++|++|++ .+.+.+|++||+.+...... ....+..++++.++++.+++. +..+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 45678999999987643211 122233456788999999995 444443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+.+.+|++++|. +|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999865 899999999975 4666899999997 58
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|++++
T Consensus 228 ~i~~~g~~~~ 237 (265)
T TIGR02769 228 QIVEECDVAQ 237 (265)
T ss_pred EEEEECCHHH
Confidence 9999998754
No 179
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-37 Score=348.51 Aligned_cols=213 Identities=25% Similarity=0.407 Sum_probs=178.7
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
-.++|+||++++.. ++++|+++||+|++||.+||+|+|||||||++|+|.+... .+|+|.+||++
T Consensus 350 ~~I~F~dV~f~y~~------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~d 414 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQD 414 (591)
T ss_pred CcEEEEeeEEEeCC------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCee
Confidence 35999999998742 3459999999999999999999999999999999999775 48999999998
Q ss_pred CC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000853 730 KV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLP 799 (1252)
Q Consensus 730 ~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 799 (1252)
+. ....|+.+||||||..++ +-||.+|+.|+. +..+.+ +|.++.+..++.+ ...|.+|+.
T Consensus 415 ik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGer 484 (591)
T KOG0057|consen 415 IKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVGER 484 (591)
T ss_pred HhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHhhc
Confidence 64 356889999999997765 579999999862 344433 3555566665543 445667766
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+ ..|||||||||+||||++.+|+|+++|||||.||.+++.++++.+++.. .++|+|++.|+. +....||+++++.+
T Consensus 485 G-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l--~ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 485 G-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRL--DLLKDFDKIIVLDN 560 (591)
T ss_pred c-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecc--hhHhcCCEEEEEEC
Confidence 4 5799999999999999999999999999999999999999999999943 589999999985 57889999999985
Q ss_pred CcEEEEecCCCCc
Q 000853 880 GGRIIYSGPLGQH 892 (1252)
Q Consensus 880 ~G~~~~~g~~~~~ 892 (1252)
|++.+.|+..+.
T Consensus 561 -G~v~e~gth~el 572 (591)
T KOG0057|consen 561 -GTVKEYGTHSEL 572 (591)
T ss_pred -CeeEEeccHHHH
Confidence 899999997543
No 180
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=341.36 Aligned_cols=217 Identities=23% Similarity=0.362 Sum_probs=181.3
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 6 ~~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~ 72 (271)
T PRK13632 6 VMIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGIT 72 (271)
T ss_pred eEEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 35889999886531 13468999999999999999999999999999999999877 458999999988
Q ss_pred CCc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 730 KVQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
+.. ..+++.++|++|++. .++.+|++||+.+..... ....++..+++.++++.++|.+..++. ++.||
T Consensus 73 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 144 (271)
T PRK13632 73 ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLS 144 (271)
T ss_pred cCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCC
Confidence 643 235677999999974 567789999998865322 123344456788999999998776665 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||++||+++ ++ ..+|++++|. +|+++
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i~ 221 (271)
T PRK13632 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS-EGKLI 221 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 599999999976 34 5799999997 58999
Q ss_pred EecCCC
Q 000853 885 YSGPLG 890 (1252)
Q Consensus 885 ~~g~~~ 890 (1252)
..|+++
T Consensus 222 ~~g~~~ 227 (271)
T PRK13632 222 AQGKPK 227 (271)
T ss_pred EecCHH
Confidence 999864
No 181
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-37 Score=341.84 Aligned_cols=219 Identities=28% Similarity=0.391 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478889887652 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ..+++.++|++|++.+++.+|+.||+.+....... ........+++++++++.+++.+..++. +.+|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCH
Confidence 32 23456799999998888889999999875321100 0011122345688999999998766655 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 5667899999997 589999
Q ss_pred ecCCCC
Q 000853 886 SGPLGQ 891 (1252)
Q Consensus 886 ~g~~~~ 891 (1252)
.|+.++
T Consensus 229 ~~~~~~ 234 (265)
T PRK10575 229 QGTPAE 234 (265)
T ss_pred ecCHHH
Confidence 998654
No 182
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.8e-36 Score=336.25 Aligned_cols=217 Identities=24% Similarity=0.297 Sum_probs=174.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 4677776652 246899999999999999999999999999999999984211568999999987543
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC----CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC-
Q 000853 733 H---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSP----EIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVS- 802 (1252)
Q Consensus 733 ~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~- 802 (1252)
. . .+..++|++|++.+++.+|++|++.+........ ....++..+++.++++.++|.+ ..+.. +.
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 143 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNE 143 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----ccc
Confidence 1 2 2334899999999999999999998764322110 1122333466889999999973 44443 33
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHH-hcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G 881 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DG 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CC
Confidence 59999999999999999999999999999999999999999999999877899999999975 45455 69999887 58
Q ss_pred EEEEecCC
Q 000853 882 RIIYSGPL 889 (1252)
Q Consensus 882 ~~~~~g~~ 889 (1252)
++++.|++
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99999986
No 183
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=337.28 Aligned_cols=221 Identities=26% Similarity=0.340 Sum_probs=177.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC---CCeEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT---GGIIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~~~ 726 (1252)
..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999988763 2358999999999999999999999999999999999743 12358999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
|.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..+++++++++.+++.+...... ...+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRL-HESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHh-hCCc
Confidence 987642 134567999999988777 5999999987543321 122334566888999999854211111 1225
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999954 799999999975 46678999999975 8
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 225 ~i~~~g~~~ 233 (253)
T PRK14242 225 KLIEVGPTE 233 (253)
T ss_pred EEEEeCCHH
Confidence 999998863
No 184
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-37 Score=339.97 Aligned_cols=218 Identities=24% Similarity=0.359 Sum_probs=179.8
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67788877652 3469999999999999999999999999999999999876 46899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRL-SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
. ...++.++|++|++.+++.+|+.||+.++..... ......+...++++++++.+++.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 2345678999999888888999999987521100 00111123345678899999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEEc
Confidence 999999999999999999999999999999999999999999877899999999975 5678899999997 48999999
Q ss_pred CCCC
Q 000853 888 PLGQ 891 (1252)
Q Consensus 888 ~~~~ 891 (1252)
+.++
T Consensus 221 ~~~~ 224 (255)
T PRK11231 221 TPEE 224 (255)
T ss_pred CHHH
Confidence 8754
No 185
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=340.83 Aligned_cols=220 Identities=25% Similarity=0.314 Sum_probs=181.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 3588899988763 2458999999999999999999999999999999999877 458999999987
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
+.. ...++.++|++|++.+++..|++||+.+...-... .....+..+++++++++.+++.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 542 23345789999999888889999999875211100 0001123345688999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|. +|+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999864 899999999975 5778899999997 58999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++++
T Consensus 224 ~~g~~~~ 230 (265)
T PRK10253 224 AQGAPKE 230 (265)
T ss_pred EeCCHHH
Confidence 9998754
No 186
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=342.80 Aligned_cols=219 Identities=24% Similarity=0.331 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888888763210 001359999999999999999999999999999999999877 46899999998754
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 000853 732 Q-------HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~-------~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~ 802 (1252)
. ..+++.++|++|++. .+...|++||+.+...... ...++..++++++++.++|.+ ..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKN-----PF 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCC-----cc
Confidence 2 234567999999962 2334799999988654321 233444566788999999963 34443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|+
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 222 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE-KGK 222 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-CCE
Confidence 89999999999999999999999999999999999999999999999877899999999975 4667789999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 223 i~~~g~~~ 230 (280)
T PRK13649 223 LVLSGKPK 230 (280)
T ss_pred EEEeCCHH
Confidence 99998864
No 187
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=338.50 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=178.9
Q ss_pred CCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEE
Q 000853 648 EPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIR 724 (1252)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~ 724 (1252)
....++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 344688999988763 2358999999999999999999999999999999999864 2 13689999
Q ss_pred ECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 725 IGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 725 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
++|.++.. ..+++.++|++|++.+++ .|++||+.+....+. ..+.++.+++++++++.+++.+...... ..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 152 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQ 152 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hc
Confidence 99987632 234667999999988776 899999988654321 1233444567889999999843111111 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
.+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|.
T Consensus 153 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~- 229 (260)
T PRK10744 153 SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMY- 229 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 2468999999999999999999999999999999999999999999999964 789999999975 4667889999997
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 230 ~G~i~~~g~~~ 240 (260)
T PRK10744 230 LGELIEFGNTD 240 (260)
T ss_pred CCEEEEeCCHH
Confidence 58999999863
No 188
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.9e-36 Score=329.75 Aligned_cols=213 Identities=23% Similarity=0.338 Sum_probs=175.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ..+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 478899988763210 01358999999999999999999999999999999999877 4589999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 731 VQHT------F-ARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~~~------~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
.... . ++.++|++|++.+++.+|+.||+.+....+. ....+.++++.++++.+++.+..+.. +..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHL-----PAQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhh
Confidence 4311 1 2579999999988888999999988654331 22334456788999999998766554 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|. +|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~-~g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLV-NGQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999754 899999999975 34 6699999997 488
Q ss_pred EEE
Q 000853 883 IIY 885 (1252)
Q Consensus 883 ~~~ 885 (1252)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 765
No 189
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=340.99 Aligned_cols=215 Identities=29% Similarity=0.381 Sum_probs=179.1
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+.. ++.+++|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPD------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 567888876531 2358999999999999999999999999999999999877 45899999998863
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 Q-----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~-----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
. ...++.++|++|++. .+...||.||+.+..... ....++..+++.++++.++|.+..++. +++||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCC
Confidence 1 124567999999963 334579999998764322 123344556788999999998777665 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|.+ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46678999999975 89999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 99864
No 190
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=337.46 Aligned_cols=224 Identities=23% Similarity=0.253 Sum_probs=181.5
Q ss_pred CCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEE
Q 000853 647 FEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDI 723 (1252)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i 723 (1252)
..+..++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|
T Consensus 16 ~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (267)
T PRK14237 16 EEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82 (267)
T ss_pred CCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence 3445689999988763 24699999999999999999999999999999999998753 1468999
Q ss_pred EECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 000853 724 RIGGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798 (1252)
Q Consensus 724 ~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 798 (1252)
.++|.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++++.++++.++|.+..+....
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~- 158 (267)
T PRK14237 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLH- 158 (267)
T ss_pred EECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhc-
Confidence 999988642 134667999999987776 699999988653321 11233445668889999998643222221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.||++++|.
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~ 236 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFY 236 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEE
Confidence 23578999999999999999999999999999999999999999999999964 799999999975 5678899999997
Q ss_pred cCcEEEEecCCC
Q 000853 879 NGGRIIYSGPLG 890 (1252)
Q Consensus 879 ~~G~~~~~g~~~ 890 (1252)
+|++++.|++.
T Consensus 237 -~G~i~~~g~~~ 247 (267)
T PRK14237 237 -LGDLIEYDKTR 247 (267)
T ss_pred -CCEEEEeCCHH
Confidence 58999999863
No 191
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-37 Score=300.07 Aligned_cols=191 Identities=24% Similarity=0.402 Sum_probs=165.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
++||+||||||||||||+|+|+..|. +|+|.+||++.+...+ ++.++.+.|+..+|..+||++|+.++.. ++-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~L 100 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGL 100 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---ccc
Confidence 48999999999999999999999997 9999999999877655 5779999999999999999999988642 111
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
+... +.+.+++.++...||....+...++ |||||||||++||+|
T Consensus 101 kL~a-------------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARcl 144 (231)
T COG3840 101 KLNA-------------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCL 144 (231)
T ss_pred ccCH-------------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHH
Confidence 1100 0123467889999999999998887 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+++-+|++||||+|+|||.-+.+....+.+++.+++.|+++..||| +++.+.+|+++++++|+|.++|+.++..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999998888888777666 4888999999999999999999877653
No 192
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.6e-36 Score=327.15 Aligned_cols=198 Identities=24% Similarity=0.307 Sum_probs=167.3
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEES 757 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~~tv~e~ 757 (1252)
.++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4579999999999999999999999999999999887 458999999987643 2345679999999998888999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000853 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837 (1252)
Q Consensus 758 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~ 837 (1252)
+.+....+. . .....+++++++++.+++.+..++. +++||||||||++|||+|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 1 1122345678899999998766654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 838 AAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 838 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999998764 899999999965 4567899999997 589998875
No 193
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=338.63 Aligned_cols=221 Identities=26% Similarity=0.354 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 729 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478888887652 246899999999999999999999999999999999987643 236999999987
Q ss_pred CCc--------ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000853 730 KVQ--------HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-----PEIDLKTKAEFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 730 ~~~--------~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 796 (1252)
+.. ...++.++|++|++.+++.+|+.||+.+......+ .....++.+++++++++.+++.+..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~- 149 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR- 149 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-
Confidence 532 12355689999999888899999999875321000 0011123445788999999998766654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhccee
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 797 g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 875 (1252)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++
T Consensus 150 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 150 ----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred ----ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4689999999999999999999999999999999999999999999999754 899999999975 4677899999
Q ss_pred eeecCcEEEEecCCCC
Q 000853 876 LMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 876 ~l~~~G~~~~~g~~~~ 891 (1252)
+|. +|++++.|++++
T Consensus 225 ~l~-~g~i~~~g~~~~ 239 (262)
T PRK09984 225 ALR-QGHVFYDGSSQQ 239 (262)
T ss_pred EEE-CCEEEEeCCHHH
Confidence 997 589999998754
No 194
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=338.68 Aligned_cols=217 Identities=24% Similarity=0.321 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4889999887632 12358999999999999999999999999999999999877 4589999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ..+++.++|++|++. +++..|+.+|+.+..... ....+...++++++++.+++.+..+.. +++|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 235667999999974 677789999998865432 123344456688999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999976 444 599999997 589999
Q ss_pred ecCCCC
Q 000853 886 SGPLGQ 891 (1252)
Q Consensus 886 ~g~~~~ 891 (1252)
.|++++
T Consensus 223 ~g~~~~ 228 (269)
T PRK13648 223 EGTPTE 228 (269)
T ss_pred ecCHHH
Confidence 998754
No 195
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.2e-36 Score=339.30 Aligned_cols=218 Identities=28% Similarity=0.407 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 46677776652 2469999999999999999999999999999999999877 45899999998754
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAW-LRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
. ...++.++|++|++.+++.+||.||+.+... .+........+..+++.++++.+++.+..++. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 3 2335568999999877788999999987531 11000011122345688999999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEec
Confidence 999999999999999999999999999999999999999999877899999999976 5668899999997 48999999
Q ss_pred CCCC
Q 000853 888 PLGQ 891 (1252)
Q Consensus 888 ~~~~ 891 (1252)
+.++
T Consensus 220 ~~~~ 223 (256)
T TIGR03873 220 PPRE 223 (256)
T ss_pred CHHH
Confidence 8654
No 196
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=335.49 Aligned_cols=220 Identities=23% Similarity=0.290 Sum_probs=176.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcC---CCCCeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR---KTGGIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~---~~~~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|. .++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477888887652 24589999999999999999999999999999999996 23212489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+...... ...+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKL-KESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcc
Confidence 87642 234567999999987776 6999999887544321 122334456788999999864221111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|. +|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY-MGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE-CCE
Confidence 899999999999999999999999999999999999999999999995 4799999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 223 ~~~~~~~~ 230 (250)
T PRK14245 223 MVEYDDTK 230 (250)
T ss_pred EEEECCHH
Confidence 99999864
No 197
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=340.92 Aligned_cols=219 Identities=24% Similarity=0.325 Sum_probs=181.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCe-EEEEEEECCe
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI-IEGDIRIGGY 728 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~-~~G~i~~~g~ 728 (1252)
..++++|+++.++. ..+.+++|+||+|++||++||+||||||||||+++|+|..++.. .+|+|.++|.
T Consensus 4 ~~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~ 72 (282)
T PRK13640 4 NIVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI 72 (282)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCE
Confidence 35889999887632 12459999999999999999999999999999999999876421 1399999999
Q ss_pred eCCc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000853 729 PKVQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGL 804 (1252)
Q Consensus 729 ~~~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~l 804 (1252)
++.. ...++.+||++|++. .++..||.||+.|....+ ....++.++++.++++.++|.+..+.. ++.|
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~L 144 (282)
T PRK13640 73 TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANL 144 (282)
T ss_pred ECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccC
Confidence 8643 234567999999974 567899999998864332 234445566789999999998766655 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|. +|++
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G~i 221 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DGKL 221 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999865 899999999975 34 6799999997 5899
Q ss_pred EEecCCC
Q 000853 884 IYSGPLG 890 (1252)
Q Consensus 884 ~~~g~~~ 890 (1252)
++.|+++
T Consensus 222 ~~~g~~~ 228 (282)
T PRK13640 222 LAQGSPV 228 (282)
T ss_pred EEeCCHH
Confidence 9999864
No 198
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-37 Score=325.27 Aligned_cols=193 Identities=24% Similarity=0.423 Sum_probs=165.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCc---cCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY---RLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~---~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++++|||||||||||++|+|+..|+ +|.|.+||+ +.+... ..+.+|||.|+-.+|+++||.|||.|+.+++.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 47999999999999999999999998 999999999 555533 34679999999999999999999999987651
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. + +.+ .+.+.+++++|+.+.|++..+... ..|||||||||++|
T Consensus 107 ~--~---p~~---------------------------~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALA 149 (345)
T COG1118 107 E--R---PSE---------------------------AEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALA 149 (345)
T ss_pred c--C---CCh---------------------------hhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHH
Confidence 1 1 000 012345688899999988777766 44999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||+..|++|+||||+++||++.+.++.++|+++....+.+++. ++|+..|++++||||++|++|+|...||+.++.
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvf-VTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEE-EeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999999998876766655 567888999999999999999999999999873
No 199
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-36 Score=322.77 Aligned_cols=196 Identities=30% Similarity=0.578 Sum_probs=163.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 729 (1252)
.++|+|+++.++.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58899999988643 13457999999999999999999999999999999999987632 568999999988
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 730 KVQ--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 730 ~~~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
+.. ...++.++|++|++.+++.+||+||+.+....+ .+. .+..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHH
Confidence 643 235667999999998889999999998753211 111 24689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|.+ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777666543367788999999975 898876
Q ss_pred c
Q 000853 887 G 887 (1252)
Q Consensus 887 g 887 (1252)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
No 200
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=346.62 Aligned_cols=228 Identities=15% Similarity=0.225 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--CeEEEEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--GIIEGDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 728 (1252)
.++++|+++.++.. .+.+.+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37788998877432 1234699999999999999999999999999999999998752 246899999999
Q ss_pred eCCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCcccccccc
Q 000853 729 PKVQH---T----FARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPE---IDLKTKAEFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 729 ~~~~~---~----~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~ 796 (1252)
++... . .++.++|++|++. +.+.+||.+++.+......... ....+.++++.++++.+||.+..+..
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~- 152 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM- 152 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH-
Confidence 86431 1 1346999999985 5678999999976432111000 11123456788999999997532211
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhccee
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 797 g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 875 (1252)
...+.+|||||||||+||+||+.+|++||+||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|+++
T Consensus 153 -~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 153 -RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred -hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 1235799999999999999999999999999999999999999999999999874 899999999975 4567899999
Q ss_pred eeecCcEEEEecCCCC
Q 000853 876 LMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 876 ~l~~~G~~~~~g~~~~ 891 (1252)
+|. +|++++.|+.++
T Consensus 231 vm~-~G~ive~g~~~~ 245 (330)
T PRK15093 231 VLY-CGQTVETAPSKE 245 (330)
T ss_pred EEE-CCEEEEECCHHH
Confidence 997 599999998644
No 201
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.8e-36 Score=331.82 Aligned_cols=198 Identities=23% Similarity=0.327 Sum_probs=167.0
Q ss_pred ccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 000853 680 LSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVI 759 (1252)
Q Consensus 680 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 759 (1252)
|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..... ..+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999877 468999999988643221 2489999999888899999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000853 760 FSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 839 (1252)
Q Consensus 760 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~ 839 (1252)
+...... .....++.++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 1223344456688999999998766654 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 840 AIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 840 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999998764 899999999975 5677899999997 5899988865
No 202
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=334.14 Aligned_cols=221 Identities=21% Similarity=0.290 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--CC-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478889887663 2458999999999999999999999999999999999864 21 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++.+|++||+.+....+. .....+.++++.++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2346779999999988888999999987643321 11223344567889999998642111111 1256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|. +|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 689999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 225 i~~~~~~~ 232 (252)
T PRK14256 225 LVECGETK 232 (252)
T ss_pred EEEeCCHH
Confidence 99999864
No 203
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=341.35 Aligned_cols=221 Identities=23% Similarity=0.326 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.... ...+.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 4788999887742100 012469999999999999999999999999999999999887 4689999999886
Q ss_pred Cc----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 731 VQ----HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ...++.+||++|++. .+...|+.|++.|..... .....+.+++++++++.+||.+..++. +..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCC
Confidence 43 234677999999974 234569999999875432 123344556789999999998877665 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~-~G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMD-SGKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 999999999976 34 4599999997 48999
Q ss_pred EecCCCC
Q 000853 885 YSGPLGQ 891 (1252)
Q Consensus 885 ~~g~~~~ 891 (1252)
+.|++++
T Consensus 224 ~~g~~~~ 230 (280)
T PRK13633 224 MEGTPKE 230 (280)
T ss_pred EecCHHH
Confidence 9998743
No 204
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-36 Score=320.07 Aligned_cols=190 Identities=58% Similarity=0.951 Sum_probs=161.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47888998876421 012468999999999999999999999999999999999753225689999999886
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
. ...++.++|++|++.+++.+|++||+.+...++ +|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 345667899999998888999999998753110 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++.++.+.+|++++|.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998644567899999997548998865
No 205
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.1e-37 Score=344.84 Aligned_cols=194 Identities=32% Similarity=0.467 Sum_probs=167.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++++||||||||||+|+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+||+||+.|.+.+++..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 47999999999999999999999997 99999999887652 34567999999999999999999999999876532
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
.. ..+.+++++++.+||++..++++++ ||+||||||+||+|
T Consensus 110 ~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-----lS~G~kqrl~ia~a 150 (293)
T COG1131 110 KE----------------------------------EAEERIEELLELFGLEDKANKKVRT-----LSGGMKQRLSIALA 150 (293)
T ss_pred hh----------------------------------HHHHHHHHHHHHcCCchhhCcchhh-----cCHHHHHHHHHHHH
Confidence 10 0122468899999999866777765 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f 237 (1252)
|+++|++|||||||+|||+.++.++++.|+++++..+.|++++ +|...++..+||+|++|++|++++.|+.+++...+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlis-sH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS-THILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEe-CCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999987544566665 56677999999999999999999999988876654
No 206
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-37 Score=346.23 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++++|+.+ +.++|+|+||++++||++||+|+||||||||++.|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999988643 3469999999999999999999999999999999999877 4599999999885
Q ss_pred C---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 000853 731 V---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK-------YSLVGLPG 800 (1252)
Q Consensus 731 ~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~ 800 (1252)
. ++++++.+++++|...++ .-|++|||.++. ++.+ +|.+.++++.+||.+.. ++.+|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 4 344677899999987654 579999998752 2333 45588999999997653 3456654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+.||||||||++|||+|++|.++++|||||.|||+.|++++++.|.+-++ |+|+|++||+.. -.+.||+|++|. +
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~-~ 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD-N 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-C
Confidence 478999999999999999999999999999999999999999999998775 899999999864 468999999997 5
Q ss_pred cEEEEecCCCCc
Q 000853 881 GRIIYSGPLGQH 892 (1252)
Q Consensus 881 G~~~~~g~~~~~ 892 (1252)
|+++++|..++.
T Consensus 548 Gkiie~G~~~~L 559 (573)
T COG4987 548 GKIIEEGTHAEL 559 (573)
T ss_pred CeeeecCCHHhh
Confidence 999999997653
No 207
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-36 Score=329.58 Aligned_cols=212 Identities=27% Similarity=0.390 Sum_probs=179.0
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
.++|+++.++ .+.+++|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677776552 2469999999999999999999999999999999999887 458999999987643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 733 H-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 733 ~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++. +..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 2 235678999999988888999999988755432 22334455678899999998776655 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999999999999999999999999999864 899999999975 4667899999997 4899998875
No 208
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=336.74 Aligned_cols=220 Identities=23% Similarity=0.280 Sum_probs=177.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999988763 24589999999999999999999999999999999998753 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |+.||+.+....+.. .....+..+++.++++.+++.+...... ...+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcc
Confidence 88642 2345679999999887764 999999987543321 1122334566888999999964211111 11256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|++++|. +|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH-LGN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999965 789999999975 4567789999997 589
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
++..|++
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9999975
No 209
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.3e-36 Score=331.56 Aligned_cols=213 Identities=25% Similarity=0.400 Sum_probs=179.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4667776552 2469999999999999999999999999999999999876 458999999988643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 733 H-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 733 ~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
. ..++.++|++|++.+++..|+.||+.+....+. .......+.++++++.+++.+..++. +++||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHH
Confidence 2 235679999999988888999999988754331 22233445678999999997766654 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.+
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 216 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSPD 216 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCHH
Confidence 99999999999999999999999999999999999998765 899999999975 4667899999997 58999999864
No 210
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=369.37 Aligned_cols=222 Identities=22% Similarity=0.310 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+||||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 478889887662 2469999999999999999999999999999999999876433689999999886
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQHT----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~~~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.... .++.+||++|++.+++.+||+||+.+....+.......++..++++++++.+++.+..+.. +.+|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCH
Confidence 4321 2456999999998889999999998865432111112334456788999999998776655 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++ ++.+.+|++++|. +|++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEeee
Confidence 9999999999999999999999999999999999999999999877999999999975 4667789999997 5899999
Q ss_pred cCCCCc
Q 000853 887 GPLGQH 892 (1252)
Q Consensus 887 g~~~~~ 892 (1252)
|++++.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 998764
No 211
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=337.86 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=176.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 726 (1252)
..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999988763 24589999999999999999999999999999999998652 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
|.++.. ..+++.++|++|++.+++ .||+||+.+....+. .. ...++++.++++.+++........ +..+
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~ 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKL-NESG 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhh-CCCc
Confidence 987531 234567999999998777 499999998764432 11 123455778888887743111111 1225
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec--
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN-- 879 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~-- 879 (1252)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|.+
T Consensus 153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~ 230 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEE 230 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccc
Confidence 68999999999999999999999999999999999999999999999964 799999999975 57788999999985
Q ss_pred --------CcEEEEecCCC
Q 000853 880 --------GGRIIYSGPLG 890 (1252)
Q Consensus 880 --------~G~~~~~g~~~ 890 (1252)
.|++++.|+++
T Consensus 231 ~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 231 VEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred cccccccccceEEEeCCHH
Confidence 36789999864
No 212
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=325.20 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=145.9
Q ss_pred eEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 000853 684 TGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAW 763 (1252)
Q Consensus 684 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~ 763 (1252)
.++|..||+++++||||-||||+.++|+|..+ |++|+ ..+ -.++|=||--.-....||++-+.-...
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EED-------LKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Ccc-------ceEeecceeecCCCCCcHHHHHHHhhh
Confidence 45688899999999999999999999999887 44776 111 146888887555567899998764432
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 000853 764 LRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 843 (1252)
Q Consensus 764 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~ 843 (1252)
-+... .-...++.+-++|.+..+..+ .+|||||.|||+||.+|.+++++.+||||++.||.+.+..+-
T Consensus 428 ~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 21111 123457788888888877764 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec---CCCCcchhHHHHHhhCC
Q 000853 844 RAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG---PLGQHSCKVIDYFESIP 904 (1252)
Q Consensus 844 ~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g---~~~~~~~~~~~~f~~~~ 904 (1252)
+.|+++.++ ++|.+++-||.-+ +.-..|++++.. |+---+| +|...++.+..|.+.++
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l~ 557 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNLG 557 (591)
T ss_pred HHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHcC
Confidence 999999854 8999999998653 334557777664 3332222 23334566778888773
No 213
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=334.20 Aligned_cols=220 Identities=22% Similarity=0.274 Sum_probs=176.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC-CeEEEEEEECCeeC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG-GIIEGDIRIGGYPK 730 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 730 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778877653 24589999999999999999999999999999999997642 24689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.. ..+++.++|++|++.+++ .|++||+.+....+.... ..+..++++.++++.+++.+...... +..+++||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 43 234667999999988776 699999998754432111 12334456788999999953211111 1124689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEEC
Confidence 99999999999999999999999999999999999999999865 899999999975 4667899999997 58999999
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+..
T Consensus 224 ~~~ 226 (246)
T PRK14269 224 ESK 226 (246)
T ss_pred CHH
Confidence 863
No 214
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=333.91 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=174.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367888887652 2458999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.++|++|++.+++ .|++||+.+....+ . . ..+++.++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 42 234567999999987776 69999998754322 1 1 134577889999996 444433 568999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999975 4667899999997 589999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|++.
T Consensus 213 ~~~~~ 217 (241)
T PRK14250 213 YAKTY 217 (241)
T ss_pred eCCHH
Confidence 88863
No 215
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.2e-36 Score=331.21 Aligned_cols=201 Identities=29% Similarity=0.408 Sum_probs=169.4
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCE-QNDIHSPN 751 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 751 (1252)
+.+++|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999877 468999999987432 23456789997 55667788
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 752 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
+|++|++.+...++. ...++..+.+.++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988755432 22334455678899999998777665 4589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 832 SGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
+|||+.++..+.+.|++++++ ++|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 999999999999999999764 899999999975 4667889999997 48888765
No 216
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3e-37 Score=329.58 Aligned_cols=195 Identities=28% Similarity=0.383 Sum_probs=165.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||||+|+|.++|. +|+|.++|+++..... .+.++||||.....+.+||+|-+.++..-...
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 58999999999999999999999987 9999999999876554 46799999998888899999999987532100
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
... .+.+ ++...++++|+.+|+.+-+++.+.+ |||||||||.|||
T Consensus 107 --~~~-------------~~~~---------------~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iAr 151 (258)
T COG1120 107 --LFG-------------RPSK---------------EDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIAR 151 (258)
T ss_pred --ccc-------------CCCH---------------hHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHH
Confidence 000 0000 1122468889999999999999987 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
||+++|+||+||||||+||...+.++++.++++.+..|.|+|+++ |+...+.++||++++|++|+++.+|+++++.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vl-HDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-HDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999987777777765 5667899999999999999999999987764
No 217
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-36 Score=340.03 Aligned_cols=220 Identities=20% Similarity=0.316 Sum_probs=177.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 478899988764210 001358999999999999999999999999999999999887 4589999999875
Q ss_pred Cc--------ccccceEEEEccCCCC-CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000853 731 VQ--------HTFARISGYCEQNDIH-SPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~--------~~~~~~~~~v~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.. ....|++||+.|....+ ....++..+++.++++.++|. +..++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 31 2345679999999742 23469999998865322 123344446678899999994 455543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|.
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~- 225 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH- 225 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999998764 899999999975 5677899999997
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 226 ~G~i~~~g~~~ 236 (289)
T PRK13645 226 EGKVISIGSPF 236 (289)
T ss_pred CCEEEEeCCHH
Confidence 58999998863
No 218
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=336.59 Aligned_cols=220 Identities=24% Similarity=0.370 Sum_probs=177.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC------eEEEEEEE
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG------IIEGDIRI 725 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~------~~~G~i~~ 725 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56778877552 346999999999999999999999999999999999987632 01799999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 726 GGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 726 ~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
+|.+... ..+++.++|++|++..++.+|++||+.+....+.. .....++..++++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987542 23455689999998766679999999875321110 0111123345688999999998765544 4
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHh
Q 000853 802 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAF 871 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~---------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 871 (1252)
..|||||||||+|||+|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 689999999999999999 599999999999999999999999999999875 899999999975 566789
Q ss_pred cceeeeecCcEEEEecCCCC
Q 000853 872 DDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 872 d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|++++|. +|++++.|++++
T Consensus 223 d~i~~l~-~G~i~~~g~~~~ 241 (272)
T PRK13547 223 DRIAMLA-DGAIVAHGAPAD 241 (272)
T ss_pred CEEEEEE-CCeEEEecCHHH
Confidence 9999997 589999998754
No 219
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-37 Score=319.15 Aligned_cols=177 Identities=26% Similarity=0.385 Sum_probs=154.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||||+|+|+.+|+ +|+|.++|.+++ .+...++||+|++.++|..||+||+.|+.+.++...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~- 104 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK- 104 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccccch-
Confidence 47999999999999999999999997 999999999883 456678999999999999999999999886643110
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. +.+.++++.|+..||.+..|....+ |||||||||+|||||+
T Consensus 105 ---------~------------------------e~~~~a~~~L~~VgL~~~~~~~P~q-----LSGGMrQRVaiARAL~ 146 (248)
T COG1116 105 ---------A------------------------EARERAKELLELVGLAGFEDKYPHQ-----LSGGMRQRVAIARALA 146 (248)
T ss_pred ---------H------------------------hHHHHHHHHHHHcCCcchhhcCccc-----cChHHHHHHHHHHHHh
Confidence 0 0112467899999999999988766 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCC
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEG 222 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G 222 (1252)
.+|+||+||||+++||+.|+.++.+.|.++.+..+.|++ .++|..+|+..++|||++|+++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl-lVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL-LVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE-EEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999998887666655 5678889999999999999984
No 220
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=348.06 Aligned_cols=192 Identities=22% Similarity=0.373 Sum_probs=168.1
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999877 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+||+.|+.. ...+++++++++.++|.+..+.. +++|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 11235688999999998776665 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 835 DARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|+.++..+++.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCHHH
Confidence 999999999999999865 899999999975 5778899999997 589999998754
No 221
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-37 Score=343.05 Aligned_cols=205 Identities=29% Similarity=0.429 Sum_probs=175.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++++|||||||||||++|+|+..|+ +|+|.++|++++...+ ++.+++|+|+-.+||++||+||+.|+.+.+....
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~ 109 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK 109 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence 36899999999999999999999998 9999999999998766 5679999999999999999999999986432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
++ +.+.+++++++.++|++..+..+.+ |||||||||+|||||
T Consensus 110 -----~~----------------------------~i~~rv~e~L~lV~L~~~~~R~p~q-----LSGGQqQRVALARAL 151 (352)
T COG3842 110 -----KA----------------------------EIKARVEEALELVGLEGFADRKPHQ-----LSGGQQQRVALARAL 151 (352)
T ss_pred -----HH----------------------------HHHHHHHHHHHHcCchhhhhhChhh-----hChHHHHHHHHHHHh
Confidence 00 0123578899999999988888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHHHh
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFFED 239 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f~~ 239 (1252)
+.+|++||||||.|+||..-+.++..-++++.+..|.|.|. ++|+..|.+.++|||+||++|+|...|+++++
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~-VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei------ 224 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI------ 224 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEE-EECCHHHHhhhccceEEccCCceeecCCHHHH------
Confidence 99999999999999999999999999999999887666554 67888899999999999999999999999998
Q ss_pred cCCCCCCCCChhHHHH
Q 000853 240 CGFRCPERKGVADFLQ 255 (1252)
Q Consensus 240 ~G~~~p~~~~~ad~~~ 255 (1252)
|..|...-.|+|+-
T Consensus 225 --Y~~P~~~fVA~FiG 238 (352)
T COG3842 225 --YERPATRFVADFIG 238 (352)
T ss_pred --hhCcchHHHHHHhC
Confidence 44555554556553
No 222
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.9e-36 Score=335.85 Aligned_cols=225 Identities=19% Similarity=0.280 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+..+.. +...+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3788999887742100 000112469999999999999999999999999999999999887 4689999999876
Q ss_pred Ccc---cccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCC
Q 000853 731 VQH---TFARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVSGL 804 (1252)
Q Consensus 731 ~~~---~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~~l 804 (1252)
... ..++.++|++|++. +.+.+|+.|++.+....+. ....+...+.++++++.+++. +..+.. +.+|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 421 23456899999974 4677899999988654331 123334456788999999994 444443 4689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 805 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 805 SgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 5666799999997 5899
Q ss_pred EEecCCC
Q 000853 884 IYSGPLG 890 (1252)
Q Consensus 884 ~~~g~~~ 890 (1252)
++.|+++
T Consensus 229 ~~~~~~~ 235 (267)
T PRK15112 229 VERGSTA 235 (267)
T ss_pred EecCCHH
Confidence 9988763
No 223
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.5e-36 Score=317.21 Aligned_cols=190 Identities=48% Similarity=0.866 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCC--CCCeEEEEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRK--TGGIIEGDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 728 (1252)
.++++|+++.++... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.+||+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 578899988774210 001246999999999999999999999999999999999987 6 56899999999
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 729 PKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 729 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754455678999999998888999999997643110 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|.+ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986456778999999975 8888764
No 224
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-36 Score=327.65 Aligned_cols=200 Identities=26% Similarity=0.377 Sum_probs=171.8
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH-TFARISGYCEQNDIHSPNITVEES 757 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~~tv~e~ 757 (1252)
+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999877 5689999999876432 235678999999988889999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000853 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837 (1252)
Q Consensus 758 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~ 837 (1252)
+.+...... ....+.++.+.++++.++|.+..++. ++.||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 988653321 22334455678899999998776665 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 838 AAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 838 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 215 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999998764 899999999975 46678999999974 8999998863
No 225
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-36 Score=340.39 Aligned_cols=223 Identities=21% Similarity=0.261 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 727 (1252)
.++++|+++.+.. +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5889999987742 124589999999999999999999999999999999997642 24589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|+||++.++ ..|++||+.|+..... ....+..++.+.++++.++|.+..++.++. .+.
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK-AGN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC-Ccc
Confidence 98742 24567899999999876 4799999998643321 111222334577888998885433333433 357
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+|++++|. +|+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-QGW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999876 799999999975 4556699999997 589
Q ss_pred EEEecCCCC
Q 000853 883 IIYSGPLGQ 891 (1252)
Q Consensus 883 ~~~~g~~~~ 891 (1252)
+++.|++.+
T Consensus 302 i~e~g~~~~ 310 (329)
T PRK14257 302 IEEAGETKT 310 (329)
T ss_pred EEEeCCHHH
Confidence 999999743
No 226
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=3.8e-35 Score=369.15 Aligned_cols=124 Identities=26% Similarity=0.362 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEE
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 826 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p---~ill 826 (1252)
.+|+.|++.|...+.. .....+.++.+||.+. .+.. +..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 3789999998765421 1124678999999753 3333 4689999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee-----cCcEEEEecCCC
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGRIIYSGPLG 890 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~ 890 (1252)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|+++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999878999999999864 456899999994 579999999874
No 227
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-36 Score=333.43 Aligned_cols=220 Identities=21% Similarity=0.288 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--C-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 588999987653 24589999999999999999999999999999999997652 1 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |++||+.+....+.. ...++..++++++++.+++.+...... ...+.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRL-HTQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcc
Confidence 87632 2345679999999887775 999999886543311 123344456788899998854211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY-MGE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999965 799999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
++..|+++
T Consensus 232 i~~~g~~~ 239 (259)
T PRK14274 232 LVECNDTN 239 (259)
T ss_pred EEEECCHH
Confidence 99999864
No 228
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.4e-36 Score=349.20 Aligned_cols=195 Identities=23% Similarity=0.376 Sum_probs=169.3
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999887 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+||+.|+.... ...+.+++++++++.++|.+..++. +.+|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 1223455688999999998777665 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 835 DARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999999865 899999999975 5667899999997 58999999864
No 229
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.4e-35 Score=376.68 Aligned_cols=210 Identities=26% Similarity=0.363 Sum_probs=178.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+. .++.+|+|+|++|+|||++||+|+||||||||+|+|+|.++ |.+|+|.+||+++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 5899999998842 13469999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-------KYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~ 800 (1252)
.. ..+|+.+|||+|++.++. -|++||+.++. + .+ +++++++++..++.+. .|+.+|..
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~-----~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA-----P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC-----C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 53 467889999999998765 69999998742 1 22 2446777887777643 46667655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|++||++ +..+.+|++++|+ +
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~-~ 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLD-A 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEE-C
Confidence 3689999999999999999999999999999999999999999999886 58999999986 4567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 660 G~iv~~G~~~~ 670 (686)
T TIGR03797 660 GRVVQQGTYDE 670 (686)
T ss_pred CEEEEECCHHH
Confidence 99999999654
No 230
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-36 Score=331.61 Aligned_cols=220 Identities=23% Similarity=0.260 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478889887652 245899999999999999999999999999999999976531 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .|++||+.|....... ...++..++++++++.+++.+...... ...+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 146 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDL-KKSAL 146 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcc
Confidence 88642 134567999999998776 8999999987543321 122334456788999998753111111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|. +|+
T Consensus 147 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~-~G~ 223 (251)
T PRK14270 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL-MGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE-CCe
Confidence 8999999999999999999999999999999999999999999999876 699999999975 5667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14270 224 LIEFNKTE 231 (251)
T ss_pred EEEeCCHH
Confidence 99999864
No 231
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-36 Score=335.96 Aligned_cols=217 Identities=25% Similarity=0.348 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899998876321 12358999999999999999999999999999999999887 5689999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDI-HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234667999999974 567789999998765432 123344456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|.+ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 34 46999999975 89999
Q ss_pred ecCCC
Q 000853 886 SGPLG 890 (1252)
Q Consensus 886 ~g~~~ 890 (1252)
.|+++
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 99864
No 232
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-36 Score=324.99 Aligned_cols=191 Identities=26% Similarity=0.382 Sum_probs=163.2
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
|+||++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999877 458999999987531 1245679999999988889999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+||+.+..... ..+..++++.++++.+++.+..+.. +.+||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2233455688999999998765544 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 835 DARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999865 899999999975 4667899999997 48888765
No 233
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-36 Score=332.39 Aligned_cols=221 Identities=22% Similarity=0.291 Sum_probs=178.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-e--EEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-I--IEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~--~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899987663 245899999999999999999999999999999999986532 2 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .|++||+.+....+. .....+.++.+.++++.+++.+...... +..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 149 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKL-NKSAL 149 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHh-cCCcc
Confidence 87532 234567999999998877 899999988754332 1122334456788899888843211111 12356
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec---
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN--- 879 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~--- 879 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~ 227 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDES 227 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999865 699999999986 57788999999973
Q ss_pred -CcEEEEecCCC
Q 000853 880 -GGRIIYSGPLG 890 (1252)
Q Consensus 880 -~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 228 ~~G~i~~~~~~~ 239 (259)
T PRK14260 228 RIGQMVEFGVTT 239 (259)
T ss_pred CCceEEEeCCHH
Confidence 59999999864
No 234
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-36 Score=327.37 Aligned_cols=212 Identities=23% Similarity=0.329 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. + ..|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 567888877631 1 138999999999999999999999999999999877 45899999998754
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 732 QH-TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 732 ~~-~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++++.++++.+++.+..++. +..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHH
Confidence 32 23457899999998888899999998753211 111 123355688999999998776665 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
|++|||+++.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999975 4667789999997 5899999986
Q ss_pred C
Q 000853 890 G 890 (1252)
Q Consensus 890 ~ 890 (1252)
+
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 4
No 235
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=294.09 Aligned_cols=207 Identities=24% Similarity=0.339 Sum_probs=175.4
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------------c---cccc
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------------H---TFAR 737 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------------~---~~~~ 737 (1252)
++...+||+||++.++|+.+.|+|.|||||||+|+||.-+.. |..|.|.+||..+.. + ..|.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 356779999999999999999999999999999999997766 568999999975321 1 1344
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH
Q 000853 738 ISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVE 817 (1252)
Q Consensus 738 ~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~a 817 (1252)
..|+|+|+..++..+||.||+.-+- .+ ....++.+..++.+..|..+|+.+.++.. +..|||||+||++||||
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaP-vh-VLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIARa 166 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAP-VH-VLGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIARA 166 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcc-hH-hhcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHHHHHHH
Confidence 5799999999999999999997542 11 12345677788899999999999998865 56899999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 818 LVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 818 l~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.+.. .-+...+++.+. .|.|.++|||++
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~q 238 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPEQ 238 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChHH
Confidence 999999999999999999999999999999999999999999997543 334457777886 599999999853
No 236
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-36 Score=331.86 Aligned_cols=220 Identities=25% Similarity=0.305 Sum_probs=175.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--CC-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899987663 2458999999999999999999999999999999999743 21 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ....+..++.+.++++.+++.+...... ...+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcc
Confidence 87632 234567999999988776 899999988754332 1122333456788899988753211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL-DGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999865 699999999975 5677899999997 489
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+.+
T Consensus 225 i~~~g~~~ 232 (252)
T PRK14239 225 LIEYNDTK 232 (252)
T ss_pred EEEeCCHH
Confidence 99999864
No 237
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=331.30 Aligned_cols=220 Identities=22% Similarity=0.309 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999988763 246899999999999999999999999999999999987631 3689999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 728 YPKVQ----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 728 ~~~~~----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+...... ....++..+.+.++++.+++.+..++... ..+.+
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234667999999988777 899999987643221 12333444566788899998653221111 22568
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999976 589999999975 56778999999974 899
Q ss_pred EEecCCC
Q 000853 884 IYSGPLG 890 (1252)
Q Consensus 884 ~~~g~~~ 890 (1252)
++.|+++
T Consensus 241 ~~~g~~~ 247 (276)
T PRK14271 241 VEEGPTE 247 (276)
T ss_pred EEeCCHH
Confidence 9999864
No 238
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.4e-36 Score=323.50 Aligned_cols=189 Identities=25% Similarity=0.373 Sum_probs=161.4
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC---cc----cccceEEEEccCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV---QH----TFARISGYCEQNDIHS 749 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~----~~~~~~~~v~q~~~~~ 749 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. .. ..++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999877 46899999998742 11 2356799999999888
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000853 750 PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829 (1252)
Q Consensus 750 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDE 829 (1252)
+..|++||+.+....+. ....+..++++++++.+++.+..++. +.+||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYKK---LSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 88999999998654321 22334456788999999998776655 46899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 830 PTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 830 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
||+|||+.++..+.+.|+++.++|.|||++||+++ ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877899999999974 45678888764
No 239
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=332.86 Aligned_cols=220 Identities=23% Similarity=0.297 Sum_probs=175.5
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 726 (1252)
..++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3588999987662 24599999999999999999999999999999999998652 1368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
|.++.. ..+++.++|++|++.+++. |+.||+.+....+.. .. ..+++++++++.+++.+...... ...+
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~---~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~ 178 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGY---DG-DIDERVEESLRRAALWDEVKDQL-DSSG 178 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCC---cH-HHHHHHHHHHHHcCCCchhHHHH-hCCc
Confidence 987532 2346689999999877775 999999887544321 12 23456888999998853111111 1125
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|+++++.++|
T Consensus 179 ~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G 256 (285)
T PRK14254 179 LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGG 256 (285)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCC
Confidence 68999999999999999999999999999999999999999999999976 489999999975 4566789876554469
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|++.
T Consensus 257 ~i~~~g~~~ 265 (285)
T PRK14254 257 ELVEFDDTD 265 (285)
T ss_pred EEEEeCCHH
Confidence 999998863
No 240
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.7e-36 Score=328.28 Aligned_cols=202 Identities=24% Similarity=0.341 Sum_probs=167.1
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC--eEEEEEEECCeeCCcccc-cceEEEEccCCC--CCCCCC
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGYPKVQHTF-ARISGYCEQNDI--HSPNIT 753 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~~t 753 (1252)
+++|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987631 158999999988654333 357899999984 556789
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG---IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
+.|++.+....... ..+..++++.++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999876543211 12334566889999999973 33333 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 831 TSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 211 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTVK 211 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999764 899999999975 5667899999997 58999998863
No 241
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=330.03 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--CC-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 727 (1252)
.-+++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 5 HASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred EEEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 346677776552 2468999999999999999999999999999999999864 21 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++. |+.||+.+....+.. ....+..++.+.++++.+++.+...+... ..+.
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAF 148 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChh
Confidence 87532 1346679999999887775 999999886433321 11223344567889999998652211111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|.+ |+
T Consensus 149 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~ 225 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQS-GR 225 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999864 899999999975 56678999999974 89
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 226 i~~~~~~ 232 (251)
T PRK14244 226 IVEYNTT 232 (251)
T ss_pred EEEeCCH
Confidence 9999886
No 242
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=329.88 Aligned_cols=219 Identities=25% Similarity=0.335 Sum_probs=176.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECCe
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGGY 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 728 (1252)
++++|+++.++ ++.+++|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 77888887652 245899999999999999999999999999999999976531 26899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 729 PKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 729 ~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+++.++.+++.+..+... ...+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7642 134567999999998777 8999999986543211 122334456788899988864211111 223578
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 799999999975 46778999999975 899
Q ss_pred EEecCCC
Q 000853 884 IYSGPLG 890 (1252)
Q Consensus 884 ~~~g~~~ 890 (1252)
+..|+++
T Consensus 224 ~~~g~~~ 230 (250)
T PRK14262 224 IEYGPTR 230 (250)
T ss_pred EEecCHH
Confidence 9999863
No 243
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=328.21 Aligned_cols=219 Identities=25% Similarity=0.333 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+++|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887663 245899999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++++.++++.+++.+...... ...+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRL-KKSAL 145 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCC
Confidence 87642 234667999999988776 8999999987543321 123344566788888888743111111 11256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GE 222 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999964 899999999965 46678999999975 89
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 223 i~~~~~~ 229 (250)
T PRK14240 223 IVEFGDT 229 (250)
T ss_pred EEEeCCH
Confidence 9999875
No 244
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=331.50 Aligned_cols=220 Identities=25% Similarity=0.314 Sum_probs=177.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999988763 24589999999999999999999999999999999998652 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+...... ...+.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRL-HENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcc
Confidence 88642 2346789999999888775 999999886543311 122233456788899888864211111 12246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|. +|+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G~ 244 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY-MGK 244 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 799999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 245 i~~~g~~~ 252 (272)
T PRK14236 245 LVEYGDTD 252 (272)
T ss_pred EEecCCHH
Confidence 99999863
No 245
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=363.64 Aligned_cols=220 Identities=26% Similarity=0.347 Sum_probs=184.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378888887662 2468999999999999999999999999999999999887 4589999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 731 VQH---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLS-PEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
... . .++.++|++|++.+++.+||+||+.++...+.. .....++.++++.++++.+++.+..+.. +.+||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCC
Confidence 421 1 245689999999888999999999886432210 1122333456688999999998876655 45899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++ ++...||++++|. +|+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 5667899999997 589999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.|++++.
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9998764
No 246
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=300.27 Aligned_cols=191 Identities=27% Similarity=0.342 Sum_probs=165.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+|+|+|||||||||+|++|++++.|+ +|+|+++|.+..+.. .++.+|.++.+..++..+|++|||.|.+++.+..
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 58999999999999999999999998 999999999875433 3677899887788999999999999998876432
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
+. +.+.+++++.+.|+|.++.|+++|+ +|-|+||||+||||
T Consensus 107 ~~----------------------------------~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARA 147 (245)
T COG4555 107 RK----------------------------------EIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARA 147 (245)
T ss_pred hh----------------------------------HHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHH
Confidence 10 1123467888999999999999988 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++++|||||||||..+.+.+.+.++++.. .|++++. .+|..+|+..+||+|++|++|++++.|+.+.+..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viF-SSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIF-SSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEE-ecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999998864 4566655 4678899999999999999999999999877643
No 247
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=329.33 Aligned_cols=221 Identities=25% Similarity=0.310 Sum_probs=176.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCe---EEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGI---IEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+++|+||+|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477888887653 2468999999999999999999999999999999999876432 379999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.+.+.++.+++.+...... +..++
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 147 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRL-KTPAT 147 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhh-cCCcc
Confidence 87642 2345679999999988888999999987654321 1122333455677777776642111111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 799999999975 56667899999974 89
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 225 i~~~~~~~ 232 (252)
T PRK14272 225 LVEHGPTD 232 (252)
T ss_pred EEEeCCHH
Confidence 99999864
No 248
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.5e-35 Score=330.95 Aligned_cols=216 Identities=24% Similarity=0.307 Sum_probs=175.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee-
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 729 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478899887653 2458999999999999999999999999999999999877 458999999987
Q ss_pred ----CCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000853 730 ----KVQH---T----FARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSL 795 (1252)
Q Consensus 730 ----~~~~---~----~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 795 (1252)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.++.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2446899999974 5677899999976432211 1112234556788999999963 44433
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcce
Q 000853 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 796 ~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+...+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4689999999999999999999999999999999999999999999998765 899999999975 455678999
Q ss_pred eeeecCcEEEEecCCC
Q 000853 875 ILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 875 ~~l~~~G~~~~~g~~~ 890 (1252)
++|. +|++++.|+++
T Consensus 223 ~~l~-~g~i~~~~~~~ 237 (258)
T PRK11701 223 LVMK-QGRVVESGLTD 237 (258)
T ss_pred EEEE-CCEEEEeCCHH
Confidence 9997 58999999863
No 249
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.2e-36 Score=376.98 Aligned_cols=211 Identities=26% Similarity=0.404 Sum_probs=176.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+. +++++|+|+|++|+|||++||+||||||||||+++|+|.+ + .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 589999986542 1246899999999999999999999999999999999987 4 389999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++||+|++.++. -|++||+.++. ++.++ ++++++++..++.+ ..|+.+|..+
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 43 467889999999998765 59999998752 22333 34566666666543 4577787664
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+||||||||++|||||+++|+||+||||||+||+++++.+.+.|+++. +++|+|++||++ +....+|++++|. +
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~-~ 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQ-D 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEe-C
Confidence 6799999999999999999999999999999999999999999999986 489999999997 4567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 559 G~i~e~G~~~e 569 (588)
T PRK11174 559 GQIVQQGDYAE 569 (588)
T ss_pred CeEeecCCHHH
Confidence 89999998644
No 250
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=331.83 Aligned_cols=217 Identities=21% Similarity=0.301 Sum_probs=175.6
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~ 726 (1252)
..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.+|
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 3588999988663 2358999999999999999999999999999999999743 2 1268999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG----IKYSLVG 797 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~g 797 (1252)
|.++.. ..+++.++|++|++.+++. |+.||+.+....+.. ......++++.++++.+++.+ ..+.
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~--- 178 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDK--- 178 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhC---
Confidence 987532 1346679999999987764 999999987543321 122333456778888888742 2222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 798 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 798 ~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 179 --~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 179 --NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 2568999999999999999999999999999999999999999999999875 689999999975 466789999999
Q ss_pred ecCcEEEEecCCC
Q 000853 878 KNGGRIIYSGPLG 890 (1252)
Q Consensus 878 ~~~G~~~~~g~~~ 890 (1252)
. +|++++.|++.
T Consensus 255 ~-~G~i~~~g~~~ 266 (286)
T PRK14275 255 Y-EGVLVEHAPTA 266 (286)
T ss_pred E-CCEEEEeCCHH
Confidence 7 48999999863
No 251
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=328.41 Aligned_cols=220 Identities=20% Similarity=0.247 Sum_probs=177.9
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 726 (1252)
+.+..+++++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|..++. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 446677776654 2356999999999999999999999999999999999987531 258999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 727 GYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 727 g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+++.++++.+++.+..+...+ ..+
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 13456799999998776 6999999998765432 1 12334568889999998643222221 235
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee---
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK--- 878 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~--- 878 (1252)
++||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 78999999999999999999999999999999999999999999999964 799999999975 5677899999996
Q ss_pred ----cCcEEEEecCCC
Q 000853 879 ----NGGRIIYSGPLG 890 (1252)
Q Consensus 879 ----~~G~~~~~g~~~ 890 (1252)
++|++++.|+.+
T Consensus 226 ~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 226 SQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccCCceEEEeCCHH
Confidence 469999999863
No 252
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.5e-35 Score=322.97 Aligned_cols=194 Identities=24% Similarity=0.354 Sum_probs=160.6
Q ss_pred cccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 000853 673 NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 673 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~ 752 (1252)
+++++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~ 99 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPEL 99 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCC
Confidence 3445679999999999999999999999999999999999877 568999999986421 11123345679
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTs 832 (1252)
||+||+.+....+. ......++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++++|||||+
T Consensus 100 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEP~~ 171 (224)
T cd03220 100 TGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLA 171 (224)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999988754331 22334455678899999998776665 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++++. +|++++.|
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999877899999999965 4667789999997 58888765
No 253
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=327.89 Aligned_cols=219 Identities=24% Similarity=0.275 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367888877652 246899999999999999999999999999999999986632 3589999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 728 YPKVQ----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 728 ~~~~~----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
.++.. ...++.++|++|++.+++ .|+.||+.+...... ....+..++++.+.++.+++.+...... ...+.+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHh-hcCccc
Confidence 87531 234667999999988876 899999988643321 1122333456778888888754221111 112468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~-~G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL-MGEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999976 699999999975 5677899999997 4899
Q ss_pred EEecCC
Q 000853 884 IYSGPL 889 (1252)
Q Consensus 884 ~~~g~~ 889 (1252)
++.|++
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 999985
No 254
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=343.69 Aligned_cols=225 Identities=23% Similarity=0.323 Sum_probs=188.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC--eEEEEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 728 (1252)
-++++|++..+.... +...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~~---------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATDG---------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecCC---------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 478888877665431 2246999999999999999999999999999999999987643 35899999998
Q ss_pred eCCc---c----cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 729 PKVQ---H----TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 729 ~~~~---~----~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
++.. . ...+.++|++|++ .+.|.+|+.+.+.-...++.. ...++..+++.++|+.+||.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6432 1 1346799999997 456779999988876666543 2367778889999999999887654 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
.+++|||||||||.||+||+.+|++||+||||++||+.++.+|++.|+++.+ .|.++|++|||+. -+.+.+|++++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 5789999999999999999999999999999999999999999999999985 4999999999976 3678899999997
Q ss_pred cCcEEEEecCCCC
Q 000853 879 NGGRIIYSGPLGQ 891 (1252)
Q Consensus 879 ~~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 230 -~G~iVE~G~~~~ 241 (539)
T COG1123 230 -KGEIVETGPTEE 241 (539)
T ss_pred -CCEEEEecCHHH
Confidence 599999999754
No 255
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.3e-35 Score=328.43 Aligned_cols=214 Identities=21% Similarity=0.289 Sum_probs=174.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC--eEEEEEEECCe
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG--IIEGDIRIGGY 728 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 728 (1252)
.++++|+++.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 57888988765 135899999999999999999999999999999999987631 16899999998
Q ss_pred eCCcccc-cceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCCC
Q 000853 729 PKVQHTF-ARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI---KYSLVGLPGVS 802 (1252)
Q Consensus 729 ~~~~~~~-~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~g~~~~~ 802 (1252)
++..... ++.++|++|++. +.+..|+.+++.+.+..... .. .++++.++++.+++.+. .++. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 8653332 357999999974 44568999998765432211 11 23568899999999762 2332 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-HG 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999999998764 899999999975 4567789999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 218 ~i~~~~~~~ 226 (254)
T PRK10418 218 RIVEQGDVE 226 (254)
T ss_pred EEEEecCHH
Confidence 999999863
No 256
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=364.10 Aligned_cols=220 Identities=25% Similarity=0.301 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 478889887652 2468999999999999999999999999999999999876 4589999999876
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 731 VQHT----FARISGYCEQNDIHSPNITVEESVIFSAWL----RLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 731 ~~~~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.... .++.++|++|++.+++.+||+||+.++... +.......++.++++.++++.+|+.+..++. ++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VA 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hh
Confidence 4321 235689999999888999999999875321 1100012234456788999999998776665 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|. +|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DGS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 89999999999999999999999999999999999999999999999877999999999975 4667889999997 589
Q ss_pred EEEecCCCCc
Q 000853 883 IIYSGPLGQH 892 (1252)
Q Consensus 883 ~~~~g~~~~~ 892 (1252)
+++.|++++.
T Consensus 223 i~~~g~~~~~ 232 (510)
T PRK09700 223 SVCSGMVSDV 232 (510)
T ss_pred EeeecchhhC
Confidence 9999998654
No 257
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-35 Score=319.42 Aligned_cols=201 Identities=22% Similarity=0.302 Sum_probs=171.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+++++||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899887552 2458999999999999999999999999999999999877 4589999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
.....++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.++|.+..++. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHH
Confidence 543345568999999988888999999988754432 1 1234567889999998766655 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999976 5778889988875
No 258
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=328.84 Aligned_cols=222 Identities=21% Similarity=0.276 Sum_probs=178.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999988763 235899999999999999999999999999999999987642 1379999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|+.||+.+....... ....+..+++.++++.+++.+..+... ...+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKI-HKSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcc
Confidence 87531 234667999999988777 8999999886533211 122334456788999998854221111 12356
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecC-
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNG- 880 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~- 880 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|.++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999875 4899999999975 577889999999742
Q ss_pred ---cEEEEecCCC
Q 000853 881 ---GRIIYSGPLG 890 (1252)
Q Consensus 881 ---G~~~~~g~~~ 890 (1252)
|++++.|+++
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999999874
No 259
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.3e-35 Score=320.17 Aligned_cols=211 Identities=25% Similarity=0.416 Sum_probs=175.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.+... .+.+.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888765311 012569999999999999999999999999999999999876 56899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 732 QH------TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++..+++.++++.+++.+..+.. +++||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 21 245679999999988888999999998754321 123344556789999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|||++||+++ ..+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999964 4578999999974 664
No 260
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-35 Score=318.24 Aligned_cols=198 Identities=24% Similarity=0.290 Sum_probs=164.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 46677777652 2458999999999999999999999999999999999877 45899999998754
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ..+++.++|++|++.+++.+|+.||+.+....+.. ..+++++++++.+|+.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP------GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 23456789999999888889999999887544311 1235678899999998766654 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
||++||+||+++|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+ ..|+...++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~~~~ 201 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PV-ASDKVRKLR 201 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hh-ccCCceEEe
Confidence 9999999999999999999999999999999999999999877899999999975 34 445544433
No 261
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=1.7e-34 Score=375.96 Aligned_cols=137 Identities=22% Similarity=0.304 Sum_probs=108.8
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 823 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~---~~p~ 823 (1252)
.+...||.|+|.++..-..+.....++..+++ +.++.+||.+. .+.. +.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 34568999999887542211111233444556 57889999765 4443 4689999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee-----cCcEEEEecCCCCc
Q 000853 824 IIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGRIIYSGPLGQH 892 (1252)
Q Consensus 824 illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~~~ 892 (1252)
+++|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|++++|. ++|++++.|++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 99999999999999999999999999888999999999875 348899999995 36899999998653
No 262
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=328.80 Aligned_cols=220 Identities=22% Similarity=0.289 Sum_probs=175.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999988663 2468999999999999999999999999999999999642 1 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+...... ...+.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 163 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRL-HSSAL 163 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHH-hcCcc
Confidence 87642 1345679999999887774 99999987643221 1122233455778888888752111111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~-~G~ 240 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL-NGD 240 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999965 689999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 241 i~~~~~~~ 248 (268)
T PRK14248 241 LVEYDQTE 248 (268)
T ss_pred EEEeCCHH
Confidence 99999863
No 263
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=327.04 Aligned_cols=220 Identities=23% Similarity=0.286 Sum_probs=175.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 377888887653 245899999999999999999999999999999999987642 1369999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++. |++||+.+....+... ..+..++.++++++.+++.+...... ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87532 2346789999999988774 9999999875433211 12223455777888888753211111 12357
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|. +|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CCe
Confidence 899999999999999999999999999999999999999999999985 5899999999975 5667789999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99999864
No 264
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=327.92 Aligned_cols=220 Identities=26% Similarity=0.285 Sum_probs=176.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478889887653 246899999999999999999999999999999999975421 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++ .||+||+.+....+.. ......++.+.++++.+++.+...+.. ...+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRL-HDSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHh-hcChh
Confidence 88642 234567999999998877 4999999987654321 122333456788888888753211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~-~G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY-LGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 689999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
++..|+++
T Consensus 226 i~~~g~~~ 233 (253)
T PRK14261 226 LIEFDKTT 233 (253)
T ss_pred EEEcCCHH
Confidence 99998863
No 265
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.2e-35 Score=330.56 Aligned_cols=222 Identities=18% Similarity=0.275 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. +...+|+|+||+|++||+++|+||||||||||+++|+|..+ .+|+|.+||.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3788999987742 12458999999999999999999999999999999999875 379999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL------PGV 801 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~------~~~ 801 (1252)
.. ...++.++|++|++.+++ .|++||+.... ... ++.+.+.++.+||.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345678999999998876 59999996321 111 23467788889987655543321 134
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|+++ ....+|++++|. +|
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~-~G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIE-EN 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEec-CC
Confidence 5799999999999999999999999999999999999999999999875 4899999999974 345699999997 58
Q ss_pred EEEEecCCCCcchhHHHHHhh
Q 000853 882 RIIYSGPLGQHSCKVIDYFES 902 (1252)
Q Consensus 882 ~~~~~g~~~~~~~~~~~~f~~ 902 (1252)
++++.|++++... ...||..
T Consensus 213 ~i~~~g~~~~l~~-~~~~~~~ 232 (275)
T cd03289 213 KVRQYDSIQKLLN-EKSHFKQ 232 (275)
T ss_pred eEeecCCHHHHhh-CcHHHHH
Confidence 9999999865432 2245554
No 266
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=331.37 Aligned_cols=219 Identities=24% Similarity=0.380 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWRN------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEecC------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 4788999887631 2458999999999999999999999999999999999877 4689999999876
Q ss_pred CcccccceEEEEccCCCCC--CCCCHHHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 731 VQHTFARISGYCEQNDIHS--PNITVEESVIFSAWLR-LSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~--~~~tv~e~l~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.....++.++|++|++.+. ...+++|++.+..... ..........++++.++++.++|.+..++. +..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHH
Confidence 4322234689999997642 2357899886532100 000111122345678889999998776655 4589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++ +|++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 566778887555 48999999
Q ss_pred CCCC
Q 000853 888 PLGQ 891 (1252)
Q Consensus 888 ~~~~ 891 (1252)
++++
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8765
No 267
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.1e-36 Score=307.30 Aligned_cols=193 Identities=25% Similarity=0.370 Sum_probs=162.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+|||||||||||+.|.|+++|+ +|+|.++|.++.... .++.+|+++|+..+|..+||+||+.|..+-
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 47999999999999999999999998 999999999876433 356799999999999999999999996543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCccc-ccccccCCcccccCccccchh
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDIC-ADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqkqRv 153 (1252)
+.. ..++.. +..+..-|+..||+.. .+....+ ||||+|||+
T Consensus 113 ~~~-----lp~~~i----------------------------~~lv~~KL~~VGL~~~~~~~~PsE-----LSGGM~KRv 154 (263)
T COG1127 113 HTK-----LPESLI----------------------------RELVLMKLELVGLRGAAADLYPSE-----LSGGMRKRV 154 (263)
T ss_pred hcc-----CCHHHH----------------------------HHHHHHHHHhcCCChhhhhhCchh-----hcchHHHHH
Confidence 211 111110 1123445777899876 6777666 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+||||++.+|+|+++||||+||||.++..+.+.++++.+..+.|+++ ++|+.++++..||++++|.+|+|+++|+++++
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~-VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE-EECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998877766665 56778899999999999999999999999987
Q ss_pred HH
Q 000853 234 CK 235 (1252)
Q Consensus 234 ~~ 235 (1252)
.+
T Consensus 234 ~~ 235 (263)
T COG1127 234 LA 235 (263)
T ss_pred Hh
Confidence 54
No 268
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=329.78 Aligned_cols=221 Identities=20% Similarity=0.243 Sum_probs=175.7
Q ss_pred CcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEE
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRI 725 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~ 725 (1252)
+..++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34688999988663 245899999999999999999999999999999999976421 25899999
Q ss_pred CCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 726 GGYPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 726 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
+|.++.. ..+++.++|++|++.+++ .|+.||+.+....+. .. ...++.+.+.++.+++........ ...
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~ 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKL-KEK 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHh-cCC
Confidence 9987532 234567999999988776 499999988644321 11 122344677788887742111111 122
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee--
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-- 878 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-- 878 (1252)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTE 236 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 568999999999999999999999999999999999999999999999975 799999999975 5778899999996
Q ss_pred ------cCcEEEEecCCC
Q 000853 879 ------NGGRIIYSGPLG 890 (1252)
Q Consensus 879 ------~~G~~~~~g~~~ 890 (1252)
++|++++.|+++
T Consensus 237 ~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 237 IDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred cccccccCceEEEeCCHH
Confidence 269999999974
No 269
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-36 Score=299.18 Aligned_cols=206 Identities=25% Similarity=0.405 Sum_probs=157.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS--HSLKVSGEVSYNGYRLDEF-----VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~--~~~~~~G~V~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+||++|||||||||||+++....+ |..+++|+|.++|+++... ..|+.+|.|+|.+.-|| +|++||+.|+.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 589999999999999999998765 4467899999999988553 23688999999999999 899999999998
Q ss_pred ccCCCCCCchhHHHH-HHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccch
Q 000853 74 CQGTGHRADSMKEVI-KLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKR 152 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqR 152 (1252)
+.+... +..++.. +..+.+. .+. ++ .|..= ....+||||||||
T Consensus 114 ~~g~~~--~~ldeiVe~sLk~Aa---------------LWd--------EV---------KDrL~--~sa~~LSGGQQQR 157 (253)
T COG1117 114 LHGIKD--KELDEIVESSLKKAA---------------LWD--------EV---------KDRLH--KSALGLSGGQQQR 157 (253)
T ss_pred hhccch--HHHHHHHHHHHHHhH---------------hHH--------Hh---------HHHhh--CCccCCChhHHHH
Confidence 775432 2222211 1111111 111 11 11110 1124599999999
Q ss_pred hHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 153 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
|+|||||+-+|+|||||||||+|||.+...|.+.+.++.+ +-|+ +.++|...++.+..|+...+..|+++++|+.++
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTI-viVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTI-VIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEE-EEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999999999999964 3444 446788889999999999999999999999887
Q ss_pred HHHHHHhcCCCCCCCCChhHHH
Q 000853 233 ICKFFEDCGFRCPERKGVADFL 254 (1252)
Q Consensus 233 ~~~~f~~~G~~~p~~~~~ad~~ 254 (1252)
+ |..|.++...||+
T Consensus 235 i--------F~~P~~~~TedYi 248 (253)
T COG1117 235 I--------FTNPKHKRTEDYI 248 (253)
T ss_pred h--------hcCccHHHHHHHh
Confidence 6 3445554444543
No 270
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-35 Score=325.60 Aligned_cols=220 Identities=23% Similarity=0.305 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC--C-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG--G-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 727 (1252)
.++++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899988663 24589999999999999999999999999999999998652 1 3589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.++++.+++........ ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 146 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNL-DRNAQ 146 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHh-ccChh
Confidence 87532 134567999999987775 7999999876543211 122233456788899998852110001 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|. +|+
T Consensus 147 ~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~-~G~ 223 (251)
T PRK14251 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM-NGD 223 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999864 799999999975 4667789999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
++..|+.+
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14251 224 LIEAGPTE 231 (251)
T ss_pred EEEeCCHH
Confidence 99998863
No 271
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.1e-35 Score=328.32 Aligned_cols=225 Identities=24% Similarity=0.359 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++... .+ + ...++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~-~~--~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG-LS--G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc-cc--c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888887764210 00 0 0013569999999999999999999999999999999999876 46899999998754
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 QH------TFARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~~------~~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
.. ..++.++|++|++ .+.+..|+.|++.+..... ......+..++++++++.+++. +..+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 21 2456799999997 3567799999987653211 1122334455788999999996 344443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|. +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999999999765 899999999975 4666899999997 58
Q ss_pred EEEEecCCCC
Q 000853 882 RIIYSGPLGQ 891 (1252)
Q Consensus 882 ~~~~~g~~~~ 891 (1252)
++++.|++++
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998765
No 272
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.1e-35 Score=314.20 Aligned_cols=179 Identities=25% Similarity=0.339 Sum_probs=151.6
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-----ccccceEEEEccCCC-CC
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-----HTFARISGYCEQNDI-HS 749 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 749 (1252)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3569999999999999999999999999999999999877 458999999987631 134567899999973 33
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000853 750 PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 829 (1252)
Q Consensus 750 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDE 829 (1252)
...|++||+.+....+ ....++..++++++++.+++.+..++. +.+||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4579999999865432 123344456688999999998766655 46899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 000853 830 PTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPS 864 (1252)
Q Consensus 830 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 864 (1252)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999864
No 273
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.3e-35 Score=316.15 Aligned_cols=184 Identities=28% Similarity=0.328 Sum_probs=157.8
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 468999999999999999999999999999999999877 458999999987532 2356679999999988889999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+||+.+.... . .+++++++++.+++.+..++. +.+||||||||++|||+|+.+|++++|||||+||
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999875311 1 234578899999998766554 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
|+.++..+.+.|+++.++|+|+|++||++. +....+++++.+
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998877999999999975 566677777655
No 274
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.6e-35 Score=321.67 Aligned_cols=210 Identities=21% Similarity=0.340 Sum_probs=171.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478889887652 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lSg 806 (1252)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ..+++++++++.+++.+ ..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 234567899999988776 5999999886443321 1 12345778999999953 44443 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++ +.+|++++|.+++..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999975 34 57999999965555566
Q ss_pred ecC
Q 000853 886 SGP 888 (1252)
Q Consensus 886 ~g~ 888 (1252)
+|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 554
No 275
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.1e-34 Score=363.82 Aligned_cols=211 Identities=24% Similarity=0.376 Sum_probs=176.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+. ++.+|+|+|++|++||.+||+||||||||||+++|+|.+. |.+|+|++||.++
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 5899999998742 2468999999999999999999999999999999999987 5689999999985
Q ss_pred C---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 V---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
. ...+|+.+|||+|++.++. -|++||+.++.. ++.+ ++++.++++..++.+ ..|+.+|..
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~- 608 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE- 608 (708)
T ss_pred HHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC-
Confidence 4 3467889999999998765 599999987521 1222 234566666666543 346677764
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++||||++++|++|+||||||+||+.+++.+++.|+++ +++|+|++||+++ ..+.+|++++|. +
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~-~ 683 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD-H 683 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE-C
Confidence 4689999999999999999999999999999999999999999999985 4899999999974 568899999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 684 G~i~~~G~~~ 693 (708)
T TIGR01193 684 GKIIEQGSHD 693 (708)
T ss_pred CEEEEECCHH
Confidence 9999999964
No 276
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=328.69 Aligned_cols=220 Identities=21% Similarity=0.239 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588999988663 2358999999999999999999999999999999999764 1 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.++++.+++.+...... ...+.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~ 166 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAY 166 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcc
Confidence 87632 234667999999988776 5999999987543211 112223445677777775432111111 12356
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~-~G~ 243 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL-NGY 243 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 799999999975 4667899999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|++.
T Consensus 244 i~~~g~~~ 251 (271)
T PRK14238 244 VNEYDDTD 251 (271)
T ss_pred EEEeCCHH
Confidence 99999863
No 277
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-35 Score=324.60 Aligned_cols=219 Identities=24% Similarity=0.311 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--CC-eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--GG-IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899987653 2458999999999999999999999999999999999753 21 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|+.||+.+....+.. ...+..++.+.+.++.+++........ ...+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcc
Confidence 87632 234567999999988777 6999999986543321 112223345677888887642211111 12256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|. +|+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL-TGN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 589999999975 4667899999997 589
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
++..|++
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 9999886
No 278
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.9e-35 Score=359.81 Aligned_cols=213 Identities=23% Similarity=0.344 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488899988763 2458999999999999999999999999999999999877 4589999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQH---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
... . .++.+||++|++.+++.+||+||+.+... . .+..++++.++++.++|.+..+.. +.+|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSS-----AGSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCC-----hhhCCH
Confidence 432 1 23468999999988999999999987531 1 123346688999999998776655 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|. +|++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 4667899999997 4899999
Q ss_pred cCCCCc
Q 000853 887 GPLGQH 892 (1252)
Q Consensus 887 g~~~~~ 892 (1252)
|++++.
T Consensus 222 g~~~~~ 227 (510)
T PRK15439 222 GKTADL 227 (510)
T ss_pred cChHHc
Confidence 987654
No 279
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.5e-35 Score=358.72 Aligned_cols=221 Identities=21% Similarity=0.338 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56778877652 24699999999999999999999999999999999998764235899999998764
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 000853 732 QHT----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSP-EIDLKTKAEFVNEVLQTIELDGIK-YSLVGLPGVSGLS 805 (1252)
Q Consensus 732 ~~~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~g~~~~~~lS 805 (1252)
... .++.+||++|++.+++.+||.||+.+....+... ....++..++++++++.+++.+.. +.. +++||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 321 2456899999998889999999998864332111 112334456788999999997653 232 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999877999999999975 56678999999974 89999
Q ss_pred ecCCCCc
Q 000853 886 SGPLGQH 892 (1252)
Q Consensus 886 ~g~~~~~ 892 (1252)
.|++++.
T Consensus 222 ~~~~~~~ 228 (500)
T TIGR02633 222 TKDMSTM 228 (500)
T ss_pred ecCcccC
Confidence 9987654
No 280
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-36 Score=303.70 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=168.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+|||||||||||++|.|..+|+ +|+|.+||.++.... .++.+|+++|+..+.+.+||.||+..+..-
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 58999999999999999999999987 999999998876543 256799999999999999999999987532
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
+. .......+.++..| +..+-..|+.+|+.+.+.++.++ |||||+|||+
T Consensus 109 ~~-----------s~~~slfglfsk~d---------------k~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVa 157 (258)
T COG3638 109 YT-----------STWRSLFGLFSKED---------------KAQALDALERVGILDKAYQRAST-----LSGGQQQRVA 157 (258)
T ss_pred cc-----------hHHHHHhCCCCHHH---------------HHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHH
Confidence 21 11122233333222 22345678899999999998887 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||||+++|+|+|-|||+++|||.+++++++.|++++...|.|+++.+|+ .+-+.++||||+-|++|+++|.||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999999999999888999888776 55778899999999999999999998864
Q ss_pred H
Q 000853 235 K 235 (1252)
Q Consensus 235 ~ 235 (1252)
+
T Consensus 237 ~ 237 (258)
T COG3638 237 D 237 (258)
T ss_pred H
Confidence 3
No 281
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=371.20 Aligned_cols=214 Identities=24% Similarity=0.356 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|++|.++. +++.+|+|+|++|++||++||+|+||||||||+++|+|..+ |.+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEh
Confidence 5899999998742 13569999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-------GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~ 800 (1252)
.. ..+++.++|+||++.+++ -|++||+.++. +...+ +++++++++..++. +..|+.+|..+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 43 457788999999998765 69999997641 11122 33466677776644 34577777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||++ +....||++++|. +
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~-~ 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVE-D 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 68999999999999999999999999999999999999999999999854 79999999987 4578899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 554 g~i~e~g~~~~ 564 (582)
T PRK11176 554 GEIVERGTHAE 564 (582)
T ss_pred CEEEEeCCHHH
Confidence 89999999643
No 282
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=314.59 Aligned_cols=193 Identities=25% Similarity=0.360 Sum_probs=160.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEecccc--ccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYD--LHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+|+|+|+++|. +|+|.++|.+.+....+..+|||||.. .+-...||+|.+..+..-+..-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 58999999999999999999999987 999999999887776677899999954 3334479999998864221100
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
.... ..+++.+++++|+..|+.+.+|..||+ |||||+|||-||||
T Consensus 109 --~~~~----------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARA 153 (254)
T COG1121 109 --FRRL----------------------------NKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARA 153 (254)
T ss_pred --cccc----------------------------cHHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHH
Confidence 0000 001123578899999999999999999 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|+++|++|+|||||+|+|+.++..+.+.|+++.++ |+|+++ ++|....+.++||+|+.|+ +++.+.|++++..
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~-vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLM-VTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEE-EeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 99999999999999999999999999999999876 666655 6788889999999999996 5678899887763
No 283
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-35 Score=323.06 Aligned_cols=231 Identities=20% Similarity=0.264 Sum_probs=181.7
Q ss_pred cEEEEEeEEEEEecCc----cccc--ccc-cccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEE
Q 000853 650 LTLTFEDVQYYVDTPS----AMKK--RGF-NQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGD 722 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~----~~~~--~~~-~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~ 722 (1252)
+.++.+|++..++... ..+. .++ ..+.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 5688888876665421 1111 111 2245679999999999999999999999999999999999877 45899
Q ss_pred EEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 723 IRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 723 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
|.++|. +++++|+..+.+.+|+.||+.+...... ...++..+.++++++.+++.+..+.. ++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999985 2566777766778999999987644322 23344455677888888887766554 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||+++ ++.+.+|++++|. +|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCE
Confidence 89999999999999999999999999999999999999999999999877999999999864 4667789999887 589
Q ss_pred EEEecCCCCcchhHHHHHhh
Q 000853 883 IIYSGPLGQHSCKVIDYFES 902 (1252)
Q Consensus 883 ~~~~g~~~~~~~~~~~~f~~ 902 (1252)
+++.|+.++..+...+||..
T Consensus 221 i~~~g~~~~~~~~~~~~~~~ 240 (264)
T PRK13546 221 LKDYGELDDVLPKYEAFLND 240 (264)
T ss_pred EEEeCCHHHHHHHhHHHHHH
Confidence 99999875543444444443
No 284
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.5e-36 Score=328.73 Aligned_cols=210 Identities=27% Similarity=0.439 Sum_probs=162.8
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 46777765521 12458999999999999999999999999999999999887 458999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTI--ELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~g~~~~~ 802 (1252)
..+++.++|++|++.++ ..||.||+.+... ........+ ...+.++.+ ++....+. .+.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLF-NRSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhc-cchHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCC
Confidence 23466799999998765 4799999976421 111111111 122333333 23322222 357
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++ ..+|++++|. +|+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~-~G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVME-KGR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999964 899999999975 34 5699999997 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+++
T Consensus 214 i~~~~~~~ 221 (237)
T cd03252 214 IVEQGSHD 221 (237)
T ss_pred EEEEcCHH
Confidence 99999863
No 285
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.7e-36 Score=371.19 Aligned_cols=214 Identities=30% Similarity=0.456 Sum_probs=179.2
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++|+|+++.++. ++++|+|+||+++|||++||+||||||||||+++|.|.++ +.+|+|.+||++
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 35999999998752 3579999999999999999999999999999999999887 458999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-------LDGIKYSLVGLP 799 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~g~~ 799 (1252)
+.. ..+|+.++||+|++.++. -|++||+.++. ++.++++ ++++++..+ +.+..|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecCC
Confidence 653 567889999999998876 89999999863 2233333 344444333 344578888844
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
..+||||||||++||||++++|+||+||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|++++|++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999887 5789999999975 4566999999985
Q ss_pred CcEEEEecCCCCc
Q 000853 880 GGRIIYSGPLGQH 892 (1252)
Q Consensus 880 ~G~~~~~g~~~~~ 892 (1252)
|++++.|+.++.
T Consensus 539 -G~i~e~G~h~eL 550 (567)
T COG1132 539 -GRIVERGTHEEL 550 (567)
T ss_pred -CEEEEecCHHHH
Confidence 899999997543
No 286
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=327.42 Aligned_cols=219 Identities=20% Similarity=0.240 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899987663 235899999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ..+++.++|++|++.+++ .|+.||+.+....+. .. ...++++.++++.+++.+..+... ...+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 87531 234667999999988776 599999988654321 11 123345677788887743211111 12356
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec---
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN--- 879 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~--- 879 (1252)
+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 8999999999999999999999999999999999999999999999976 589999999975 57788999999972
Q ss_pred -----CcEEEEecCCC
Q 000853 880 -----GGRIIYSGPLG 890 (1252)
Q Consensus 880 -----~G~~~~~g~~~ 890 (1252)
.|++++.|+++
T Consensus 229 ~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 229 EGGGRYGYLVEFDRTE 244 (264)
T ss_pred cccccCceEEEeCCHH
Confidence 58999999863
No 287
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.5e-34 Score=322.36 Aligned_cols=220 Identities=24% Similarity=0.339 Sum_probs=174.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||++||+|+||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899887653 2358999999999999999999999999999999999731125689999999875
Q ss_pred Ccc---cccc-eEEEEccCCCCCCCCCHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000853 731 VQH---TFAR-ISGYCEQNDIHSPNITVEESVIFSAWLRLS----PEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGV 801 (1252)
Q Consensus 731 ~~~---~~~~-~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~ 801 (1252)
... ..++ .++|++|++.+++.+|+++++.+....... .+....+..+++.++++.+++.+ ..++. +
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 148 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----V 148 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----c
Confidence 431 2222 478999999888999999999875432110 11122233456788999999863 44443 3
Q ss_pred C-CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHH-hcceeeeec
Q 000853 802 S-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLILMKN 879 (1252)
Q Consensus 802 ~-~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~ 879 (1252)
. +|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|.
T Consensus 149 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~- 226 (252)
T CHL00131 149 NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ- 226 (252)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-
Confidence 3 59999999999999999999999999999999999999999999999877999999999865 34344 78888886
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|++++.|+++
T Consensus 227 ~G~i~~~~~~~ 237 (252)
T CHL00131 227 NGKIIKTGDAE 237 (252)
T ss_pred CCEEEEecChh
Confidence 58999999874
No 288
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-36 Score=297.70 Aligned_cols=209 Identities=23% Similarity=0.388 Sum_probs=180.2
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCC
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSP 750 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~ 750 (1252)
++++.+|+++|+.|++|.+++|+|||||||||||.+++++.+ ..+|+|+++|.++.. +...+.++..-|+.....
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 356789999999999999999999999999999999999877 469999999998653 346667788889888888
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
.+||+|-+.|+.--. ......++.+..++++++.++|.+.+|+.+ .+||||||||.-||+.++.+.+.++||||
T Consensus 89 rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 89 RLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred eeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCc
Confidence 999999999973221 122233456678999999999999998874 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 831 TSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 831 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
.++||...+.++|+.|++++++ |+||+++.||.+. .....|.++.|. +|+++..|++++.
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~ei 223 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDEI 223 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHHh
Confidence 9999999999999999999976 9999999999875 345679999997 5999999999763
No 289
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6e-34 Score=357.68 Aligned_cols=124 Identities=27% Similarity=0.357 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCcEEE
Q 000853 751 NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 826 (1252)
Q Consensus 751 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~~---~p~ill 826 (1252)
.+||.|.+.|...+.. .....++++.+||... .+.. ...||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 4678888877654321 1124578888998653 3332 46899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeee-----cCcEEEEecCCC
Q 000853 827 MDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGRIIYSGPLG 890 (1252)
Q Consensus 827 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~ 890 (1252)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999878999999999864 457799999994 579999999874
No 290
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.5e-35 Score=368.83 Aligned_cols=211 Identities=25% Similarity=0.392 Sum_probs=179.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+|+++++||++||+|+||||||||+|+|+|..+ |.+|+|.+||.++
T Consensus 340 ~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEh
Confidence 5899999998742 2358999999999999999999999999999999999988 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++|+||++.+++. |++||+.++. +.+ +++++++++.+|+.+ -.|+.+|..
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~- 473 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ- 473 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 43 4678899999999988765 9999998752 122 244677888887654 345666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||++ +....+|++++|. +
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~-~ 549 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLH-R 549 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999999865 79999999997 4567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 550 G~i~~~G~~~~ 560 (592)
T PRK10790 550 GQAVEQGTHQQ 560 (592)
T ss_pred CEEEEEcCHHH
Confidence 99999999743
No 291
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-35 Score=309.22 Aligned_cols=180 Identities=26% Similarity=0.418 Sum_probs=152.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|.|...|+ +|+|.++|.+++.... ++.+|||+|+..+++++||+||+.....
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 47999999999999999999999997 9999999988765432 3569999999999999999999998765
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCccccc-ccccCCcccccCccccch
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICAD-TIVGDPMRRGVSGGQKKR 152 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-t~vg~~~~rgLSGGqkqR 152 (1252)
+.+.... +.+.+++++++.+||.+..+ +.+.+ ||||||||
T Consensus 110 ~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p~e-----LSGGqqQR 150 (226)
T COG1136 110 IAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKPSE-----LSGGQQQR 150 (226)
T ss_pred HcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCchh-----cCHHHHHH
Confidence 4422100 01223577888999997665 77766 99999999
Q ss_pred hHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 153 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
|||||||+.+|+|++.||||.+||+.++..|++.++++.+..|+|+++.+| .+++...|||++.|.+|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH--d~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH--DPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHhCCEEEEEeCCee
Confidence 999999999999999999999999999999999999999877888877654 4578889999999999994
No 292
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8e-35 Score=324.53 Aligned_cols=215 Identities=24% Similarity=0.288 Sum_probs=172.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee-
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP- 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 729 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 377888887653 2358999999999999999999999999999999999877 458999999976
Q ss_pred ----CCcc-------cccceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000853 730 ----KVQH-------TFARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSL 795 (1252)
Q Consensus 730 ----~~~~-------~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 795 (1252)
+... ..++.++|++|++. ..+..|+.||+.+...... . ......++.+.++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-A-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc-c-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 12346899999974 3456799999875432111 0 111233467889999999963 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcce
Q 000853 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 796 ~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4689999999999999999999999999999999999999999999998754 899999999975 466678999
Q ss_pred eeeecCcEEEEecCC
Q 000853 875 ILMKNGGRIIYSGPL 889 (1252)
Q Consensus 875 ~~l~~~G~~~~~g~~ 889 (1252)
++|. +|++++.|++
T Consensus 220 ~~l~-~G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQ-QGRVVESGLT 233 (253)
T ss_pred EEEE-CCEEEEECCH
Confidence 9997 5899999886
No 293
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=279.77 Aligned_cols=205 Identities=27% Similarity=0.361 Sum_probs=174.2
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC--c-------ccccceEEEEccC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV--Q-------HTFARISGYCEQN 745 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~-------~~~~~~~~~v~q~ 745 (1252)
+..++|.||+++.+.||.+.++||||||||||++.|.-+.. +.+|+..|.|...+ . ...|+.+|+|+|+
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh
Confidence 45679999999999999999999999999999999986554 45899999875321 1 2467789999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 000853 746 DIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 825 (1252)
Q Consensus 746 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~il 825 (1252)
..++|.+||.||+.-+- .|. ...++++.+.+..++|+.+.|.+.+|+. +-.|||||+|||+|||||+.+|++|
T Consensus 91 y~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqvl 163 (242)
T COG4161 91 YNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQVL 163 (242)
T ss_pred hccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcEE
Confidence 99999999999997542 222 2456677778899999999999999876 5689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 826 FMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 826 llDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
++||||+.|||+-..++.++|++++..|.|-+++||..+. .-..+.+++.|. +|+|++.|+..
T Consensus 164 lfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme-~g~ive~g~a~ 226 (242)
T COG4161 164 LFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYME-NGHIVEQGDAS 226 (242)
T ss_pred eecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeee-cCeeEeecchh
Confidence 9999999999999999999999999999999999997542 234567888886 59999999863
No 294
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-35 Score=356.43 Aligned_cols=217 Identities=28% Similarity=0.348 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 378888887663 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
... .+++.+||++|++.+++.+||.||+.++...+........+.++++.++++.+++.+..+.. +.+|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 421 24567999999998889999999998853211111112334456788999999997665554 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 56678999999974 898877
Q ss_pred cCC
Q 000853 887 GPL 889 (1252)
Q Consensus 887 g~~ 889 (1252)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 754
No 295
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5.7e-35 Score=323.53 Aligned_cols=199 Identities=25% Similarity=0.362 Sum_probs=168.4
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
+|+|+||++++||+++|+||||||||||+++|+|..+ + +|+|.++|.++.. ...++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7899999999999999999999999999999999874 3 7999999987643 22345689999998888889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 828 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~-------~p~illlD 828 (1252)
||+.+..... ...+...++++++++.+++.+..++. ++.||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998763211 12233356688999999998766554 46899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 829 EPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 829 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|++++.|+.++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 219 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRRDE 219 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 999999999999999999999877999999999975 4778899999997 589999998643
No 296
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-35 Score=323.51 Aligned_cols=220 Identities=25% Similarity=0.307 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCC--C-CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT--G-GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 727 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888887652 2458999999999999999999999999999999999753 1 12589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~ 802 (1252)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++++.+.++.+++.+...... +..+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 87642 2346679999999887774 99999987643221 1122334567888999998854321111 22357
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|. +|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~-~G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFL-NGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEE-CCe
Confidence 8999999999999999999999999999999999999999999999964 899999999975 5667778888886 589
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|++.
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99999864
No 297
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.2e-35 Score=366.15 Aligned_cols=214 Identities=26% Similarity=0.430 Sum_probs=180.4
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 35999999998742 12468999999999999999999999999999999999887 458999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccCCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI------KYSLVGLPG 800 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~g~~~ 800 (1252)
+.. ..+++.++||+|++.++. .|++||+.++. ++. .++.++++++..++.+. .|+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----Ccc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 643 457788999999998765 69999998752 122 23457888888888654 35666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++|. +
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~-~ 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMD-N 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEe-C
Confidence 46899999999999999999999999999999999999999999999986 4899999999975 456799999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 549 G~i~~~g~~~~ 559 (574)
T PRK11160 549 GQIIEQGTHQE 559 (574)
T ss_pred CeEEEeCCHHH
Confidence 89999998643
No 298
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.7e-35 Score=377.76 Aligned_cols=211 Identities=25% Similarity=0.398 Sum_probs=177.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+. .++.+|+|+|++|++||.+||+||||||||||+|+|+|.++ |.+|+|.+||.++
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 5899999998753 13469999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+|+.+|||+|++.++ +.|++||+.++. ++.+ ++++.++++..++.+ ..|+.+|+.+
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred HHCCHHHHHhheeEEecCChhh-hccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 43 45788999999999876 469999997641 1222 234666777776654 3466676554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.+||||||||++|||||+++|++|+||||||+||+.++..+.+.|++ .++|+|++||+++ ....+|++++|. +
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~-~ 686 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE-R 686 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe-C
Confidence 68999999999999999999999999999999999999999999986 4899999999864 567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 687 G~i~~~G~~~~ 697 (710)
T TIGR03796 687 GKVVQRGTHEE 697 (710)
T ss_pred CEEEEecCHHH
Confidence 99999999743
No 299
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-35 Score=305.05 Aligned_cols=169 Identities=28% Similarity=0.448 Sum_probs=148.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 4667776552 2358999999999999999999999999999999999876 458999999987543
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
..+++.++|++|++.+++..|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999873 9999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|.+ |+
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999999999999999999999999999877899999999975 56668899999975 54
No 300
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.9e-35 Score=312.84 Aligned_cols=196 Identities=26% Similarity=0.334 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67888877652 2458999999999999999999999999999999999876 45899999998753
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 732 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
....++.++|++|++.+++..|+.||+.+....+. .. .+.+.++++.+|+.+..+.. ++.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHH
Confidence 22256678999999888888999999987654321 11 23478899999998765544 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++ .. |+++.+
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~ 198 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDL 198 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEee
Confidence 99999999999999999999999999999999999998877999999999975 33 33 777665
No 301
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-35 Score=325.91 Aligned_cols=209 Identities=27% Similarity=0.382 Sum_probs=163.8
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. .++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 46677765531 11358999999999999999999999999999999999887 468999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTI--ELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~g~~~~~ 802 (1252)
...++.++|++|++.+++ .|++||+.+.... .......+ .+.+.++.+ ++.+..+. .+.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCC
Confidence 234567999999987765 6999999875321 11111111 234444444 44433332 256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++ ..+|++++|.+ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 8999999999999999999999999999999999999999999999964 899999999975 34 45999999975 89
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 9998875
No 302
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-35 Score=356.36 Aligned_cols=207 Identities=23% Similarity=0.321 Sum_probs=174.2
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~~ 752 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 469999999999999999999999999999999999877 4589999999876421 2356789999999888899
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 753 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTs 832 (1252)
||+||+.+............++..++++++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998753211111112333456788999999998766655 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|. +|++++.|++.+.
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhhC
Confidence 99999999999999999877999999999975 5667899999997 5899999987654
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=336.74 Aligned_cols=204 Identities=18% Similarity=0.283 Sum_probs=167.1
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEE 756 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e 756 (1252)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 469999999999999999999999999999999999887 4589999999751 1222334556789999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000853 757 SVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 836 (1252)
Q Consensus 757 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~ 836 (1252)
++.+...... ...++..+++.++++.+++.+..+.. ++.||||||||++|||||+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987654321 23344456678899999998776655 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhh
Q 000853 837 RAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFES 902 (1252)
Q Consensus 837 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~ 902 (1252)
.++..+.+.|++++++|+|||++||+++ ++...||++++|. +|++++.|++++.......|++.
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~~el~~~~~~~~~~ 240 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDIKEVVDHYDEFLKK 240 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHHHHHhhHHHHHHH
Confidence 9999999999999877999999999975 5667799999997 58999999875543334444443
No 304
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.3e-35 Score=372.59 Aligned_cols=212 Identities=27% Similarity=0.407 Sum_probs=175.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+.. +++.+|+|+|++|+|||+++|+||||||||||+++|+|..+ +.+|+|.+||+++
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 58999999988532 13569999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++||+|++.++ +.|++||+.++. ++.+ ++++.++++..++.+ ..|+.+|+.
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF-~gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~- 614 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLF-SGSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK- 614 (711)
T ss_pred HhcCHHHHHhhceEEecCcccc-ccCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-
Confidence 43 45778899999999876 479999998752 1222 344667777777654 346667654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++||||++++|+||+||||||+||++++..+.+ ... .+++|+|++||+++ ..+.+|++++|. +
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~--~~~~TvIiItHrl~--~i~~aD~IivL~-~ 688 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS--RASRTVLLIAHRLS--TVERADQILVLK-K 688 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc--cCCCeEEEEeccHH--HHHhCCEEEEEE-C
Confidence 46899999999999999999999999999999999999999998 222 35899999999864 567899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 689 G~ive~Gt~~e 699 (711)
T TIGR00958 689 GSVVEMGTHKQ 699 (711)
T ss_pred CEEEEeeCHHH
Confidence 89999999643
No 305
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=321.69 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=173.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE------
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR------ 724 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~------ 724 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~--~~G~v~~~G~~~ 74 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI--YDSKIKVDGKVL 74 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CcCceeEcCEEE
Confidence 377888887652 35689999999999999999999999999999999998763 355444
Q ss_pred ECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000853 725 IGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGV 801 (1252)
Q Consensus 725 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~ 801 (1252)
++|.+... ...++.++|++|++.+++.+|++||+.+...... ....++..+.+.++++.+++.+...... +..+
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 151 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPA 151 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCc
Confidence 44554321 2346679999999998889999999998754321 1123344466889999999864211111 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
..||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...+|++++|. +|
T Consensus 152 ~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~-~g 228 (257)
T PRK14246 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLY-NG 228 (257)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 68999999999999999999999999999999999999999999999865 699999999975 4567899999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
+++..|+.+
T Consensus 229 ~i~~~g~~~ 237 (257)
T PRK14246 229 ELVEWGSSN 237 (257)
T ss_pred EEEEECCHH
Confidence 999999864
No 306
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=327.54 Aligned_cols=223 Identities=25% Similarity=0.327 Sum_probs=175.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCC---CeEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTG---GIIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 727 (1252)
.+.++|+++.++ ++.+|+++||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 578899987663 24589999999999999999999999999999999998642 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC---------CC-CHHHHHHHHHHHHHHcCCcccc
Q 000853 728 YPKVQ-----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSP---------EI-DLKTKAEFVNEVLQTIELDGIK 792 (1252)
Q Consensus 728 ~~~~~-----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~---------~~-~~~~~~~~~~~~l~~~~l~~~~ 792 (1252)
.++.. ...++.++|++|++.+++ .||+||+.+....+... .. ..+..++.+.++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87542 134567999999988776 59999999865322100 01 1122346688899999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhc
Q 000853 793 YSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFD 872 (1252)
Q Consensus 793 ~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 872 (1252)
.... ...+.+||||||||++||+||+++|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|
T Consensus 191 ~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 1111 123578999999999999999999999999999999999999999999999976 589999999975 4667889
Q ss_pred ceeeeecCcEEEEecCCC
Q 000853 873 DLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 873 ~~~~l~~~G~~~~~g~~~ 890 (1252)
+++++.++|++++.|+++
T Consensus 268 ~i~~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 268 QTAVFLTGGELVEYDDTD 285 (305)
T ss_pred EEEEEecCCEEEEeCCHH
Confidence 976544569999999864
No 307
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=7e-35 Score=318.13 Aligned_cols=209 Identities=25% Similarity=0.417 Sum_probs=167.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. +++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 667888775521 12469999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVG------LPGVS 802 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g------~~~~~ 802 (1252)
. ...++.++|++|++.+++ .|+.||+.+... ... .+.+.+.++.+++.+..+.... ...+.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567899999987776 699999976421 111 2335677888888765554321 11246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ..+.+|+++++.+ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~--~~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPS--LLDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH--HHHhCCEEEEEeC-Ce
Confidence 8999999999999999999999999999999999999999999999876 489999999975 3478999999974 88
Q ss_pred EEEec
Q 000853 883 IIYSG 887 (1252)
Q Consensus 883 ~~~~g 887 (1252)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 87654
No 308
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.2e-34 Score=310.28 Aligned_cols=174 Identities=24% Similarity=0.330 Sum_probs=150.5
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEccCCCCCCCCCH
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 468999999999999999999999999999999999876 458999999987532 2345678999999888888999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
.||+.+....+. . + ++.+.++++.+++.+..++. +..||||||||++|||+++.+|++++|||||+||
T Consensus 91 ~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 91 LENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred HHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999988654331 1 1 23578889999998766654 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPS 864 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 864 (1252)
|+.++..+.+.|++++++|.|||++||++.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999998777999999999874
No 309
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.9e-35 Score=324.09 Aligned_cols=210 Identities=27% Similarity=0.390 Sum_probs=161.4
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 467777655310 12468999999999999999999999999999999999876 458999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCC
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK-------YSLVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~ 802 (1252)
...++.++|++|++.+++ .|++||+.+....+ ..+. ..+.++..++.+.. ++.. ...+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEE----VEEAAKKANIHDFIMSLPDGYDTLV-GERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHH----HHHHHHHcChHHHHHhhccccceee-ccCCc
Confidence 233567999999987765 69999998753211 1111 22223333322211 1111 12257
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.||++++|.+ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999987 6899999999975 34 57999999975 89
Q ss_pred EEEecCC
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 9999875
No 310
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.1e-36 Score=286.35 Aligned_cols=199 Identities=23% Similarity=0.363 Sum_probs=170.1
Q ss_pred cccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCC
Q 000853 671 GFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDI 747 (1252)
Q Consensus 671 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~ 747 (1252)
++...+..+|+++||++.+||..+|.||||||||||+|+++.+.+ +++|.+++.|++++. ..+|+.++||.|.+.
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 344456789999999999999999999999999999999999887 569999999998653 568899999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000853 748 HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 827 (1252)
Q Consensus 748 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illl 827 (1252)
+++ -||+||+.|.-.+|... .+ .....+.|+.+++.+..-++ .+.+||||||||++|+|-|..-|+||+|
T Consensus 88 Lfg-~tVeDNlifP~~~r~rr-~d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLL 157 (223)
T COG4619 88 LFG-DTVEDNLIFPWQIRNRR-PD----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLL 157 (223)
T ss_pred ccc-cchhhccccchHHhccC-CC----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEe
Confidence 976 49999999998777432 22 23466788999987654332 3568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 828 DEPTSGLDARAAAIVMRAVKNVV-ETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 828 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
|||||.||+.+++.|.++|.++. ++.+.++.+||+++ +....+|+++-+.. |++
T Consensus 158 DE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 158 DEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred cCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 99999999999999999999987 66899999999986 55789999999975 543
No 311
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.6e-35 Score=371.77 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.|+. .++.+|+|+|++|+|||++||+|+||||||||+|+|+|.++ +.+|+|.+||.++
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 5899999998842 13469999999999999999999999999999999999987 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+|+.++||+|++.++. .|++||+.++. ++.+ ++++.++++..++.+ ..|+.+|+.
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~- 598 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER- 598 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC-
Confidence 43 467889999999998765 59999998642 1222 234566677666543 346677765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ....+|++++|. +
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~-~ 674 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMD-N 674 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe-C
Confidence 468999999999999999999999999999999999999999999999864 899999999974 568899999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 675 G~i~e~G~~~ 684 (694)
T TIGR03375 675 GRIVADGPKD 684 (694)
T ss_pred CEEEeeCCHH
Confidence 9999999864
No 312
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=332.76 Aligned_cols=220 Identities=27% Similarity=0.401 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
-++.+|++.++ +..++|+||||++++||++|++|.||||||||+|+|+|.++ +++|+|.+||++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 46788887655 34679999999999999999999999999999999999887 5699999999986
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000853 731 VQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRL-SPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lS 805 (1252)
... ....-|+.|+|+..+.|++||.||+.++...+. ..-.+.+...++..++|+.+++....++.+ .+||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 432 234468999999999999999999988754433 223456677788999999999864466654 5899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
+||||.|.|||||..+++|||||||||.|+....+.+.+.+++++++|.+||++||.++ |+++.||++.||.+ |+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999986 89999999999975 89999
Q ss_pred ecC-CCCc
Q 000853 886 SGP-LGQH 892 (1252)
Q Consensus 886 ~g~-~~~~ 892 (1252)
.++ ..+.
T Consensus 226 ~~~~~~~~ 233 (500)
T COG1129 226 TRPTAAET 233 (500)
T ss_pred ecccccCC
Confidence 998 4543
No 313
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9e-34 Score=360.33 Aligned_cols=214 Identities=28% Similarity=0.423 Sum_probs=177.4
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.|+. +++.+|+|+|++++|||++||+|+||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 35899999998742 13468999999999999999999999999999999999987 458999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLP 799 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~ 799 (1252)
+.. ..+|+.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+ ..|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 643 457888999999987765 69999997631 1222 234556666666543 346666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++ ....+|++++|.
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~- 665 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE- 665 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe-
Confidence 46899999999999999999999999999999999999999999999985 5899999999974 457799999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|+.++
T Consensus 666 ~G~i~~~g~~~~ 677 (694)
T TIGR01846 666 KGQIAESGRHEE 677 (694)
T ss_pred CCEEEEeCCHHH
Confidence 499999999643
No 314
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-36 Score=328.58 Aligned_cols=219 Identities=26% Similarity=0.377 Sum_probs=182.0
Q ss_pred CCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEEC
Q 000853 647 FEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG 726 (1252)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~ 726 (1252)
.....++|+|+++.|+. ++++|+||||++.||+.+|++||||+||||++++|..... ..+|.|.+|
T Consensus 533 ~~~G~i~fsnvtF~Y~p------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iD 598 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYDP------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITID 598 (790)
T ss_pred ccCCeEEEEEeEEecCC------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEc
Confidence 34557999999998853 4679999999999999999999999999999999998766 458999999
Q ss_pred CeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHH--HHHH-HHcCCcccccccccCCC
Q 000853 727 GYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFV--NEVL-QTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 727 g~~~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~--~~~l-~~~~l~~~~~~~~g~~~ 800 (1252)
|+++.. .+.|+.+|.||||..++ +-|+..|+.|+. +..++++..+.+ ..+- +.+++.+..++++|..+
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLF-NdTI~yNIryak-----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLF-NDTILYNIRYAK-----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG 672 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceee-cceeeeheeecC-----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc
Confidence 998643 56888999999998775 569999998863 222333332221 1111 35677888899999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
. .|||||||||+|||+++.+|.+++|||+||+||..+++.|+..|.++++ ++|.|++.|+.| ..-.+|.++++. +
T Consensus 673 L-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS--TivnAD~ILvi~-~ 747 (790)
T KOG0056|consen 673 L-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS--TIVNADLILVIS-N 747 (790)
T ss_pred c-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh--heecccEEEEEe-C
Confidence 4 6999999999999999999999999999999999999999999999986 899999999976 345789999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|+|++.|..+
T Consensus 748 G~IvErG~He 757 (790)
T KOG0056|consen 748 GRIVERGRHE 757 (790)
T ss_pred CeEeecCcHH
Confidence 9999999864
No 315
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.4e-34 Score=318.78 Aligned_cols=220 Identities=23% Similarity=0.308 Sum_probs=169.3
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788877653 24589999999999999999999999999999999998421156899999998753
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHH-ccCC-C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000853 732 QH---T-FARISGYCEQNDIHSPNITVEESVIFSAW-LRLS-P--EIDLKTKAEFVNEVLQTIELD-GIKYSLVGLPGVS 802 (1252)
Q Consensus 732 ~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l~~~-~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~~~~ 802 (1252)
.. . .++.++|++|++.+++.+|+.+++.+... ++.. . ........+++++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 23468999999888887887777654311 1100 0 011122345678889999985 3333322 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHH-hcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEA-FDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~~G 881 (1252)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999877899999999965 34344 68888886 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|+++
T Consensus 223 ~i~~~g~~~ 231 (248)
T PRK09580 223 RIVKSGDFT 231 (248)
T ss_pred eEEEeCCHH
Confidence 999999863
No 316
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-34 Score=319.95 Aligned_cols=221 Identities=23% Similarity=0.225 Sum_probs=175.2
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEEC
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIG 726 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 726 (1252)
..++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3588999988763 246999999999999999999999999999999999986532 268999999
Q ss_pred CeeCC---c----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 727 GYPKV---Q----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 727 g~~~~---~----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
|.+.. . ..+++.++|++|++.+++. |++||+.+....... ......++.+.++++.+++.+...... ..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRL-GD 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHH-hC
Confidence 97642 1 2346678999999988875 999999876543211 111223456778888887742111111 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
.+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~- 234 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY- 234 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 2468999999999999999999999999999999999999999999999975 699999999975 5667899999997
Q ss_pred CcEEEEecCCC
Q 000853 880 GGRIIYSGPLG 890 (1252)
Q Consensus 880 ~G~~~~~g~~~ 890 (1252)
+|+++..|+.+
T Consensus 235 ~G~i~~~g~~~ 245 (265)
T PRK14252 235 MGELIEFGATD 245 (265)
T ss_pred CCEEEEeCCHH
Confidence 58999999863
No 317
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-35 Score=344.51 Aligned_cols=193 Identities=22% Similarity=0.401 Sum_probs=159.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.||||||||+||||+.++|..+++|+ +|+|.+||.|+.+.+. ++.+|+|.|+|++|. -||+|||.|+..
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~---- 567 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD---- 567 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC----
Confidence 48999999999999999999999997 9999999999987764 578999999999886 699999999753
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
....+++.++.+.++. .+.+ .++++++||.||+. +..||||||||++|||
T Consensus 568 ---~~t~e~i~~AAk~ANa-----------------------h~FI---~~~p~gY~T~VGEk-G~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 568 ---NATDEEIEAAAKMANA-----------------------HEFI---TNFPDGYNTVVGEK-GSQLSGGQKQRIAIAR 617 (716)
T ss_pred ---CCCHHHHHHHHHHhCh-----------------------HHHH---HhCccccccccCCc-cccccchHHHHHHHHH
Confidence 1223333333333221 1232 35999999999982 3349999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
||++||+||||||+||+||++++..+.++|.++.+ ++|+++.- | +-++.+.+|+|+++++|++++.|+++|+.+
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIA-H-RLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIA-H-RLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEe-h-hhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999999998864 46776643 3 447889999999999999999999999864
No 318
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-34 Score=308.63 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=161.7
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 56778877652 2469999999999999999999999999999999999877 46899999998754
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 732 Q--HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 732 ~--~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
. ..+++.++|++|+..+++..||+||+.+..... . . .+.+.++++.+++.+..+.. +.+||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~--~--~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS--P--G----AVGITELCRLFSLEHLIDYP-----CGLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC--c--c----hHHHHHHHHHcCCchhhhCC-----hhhcCHHHH
Confidence 2 235667999999988888999999998864211 1 1 23578899999987655544 358999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhccee
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLI 875 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~ 875 (1252)
||++|||+++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ....+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999864 345566544
No 319
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-34 Score=303.75 Aligned_cols=158 Identities=29% Similarity=0.444 Sum_probs=141.4
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-----ccccceEEEEccCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-----HTFARISGYCEQNDIHSPN 751 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ 751 (1252)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 458999999999999999999999999999999999877 468999999987542 2346779999999988888
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 752 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
.|++||+.+. ||||||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999987532 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 832 SGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|.+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 999999999999999999876 899999999964 45567899999975
No 320
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=318.56 Aligned_cols=211 Identities=27% Similarity=0.398 Sum_probs=165.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. .+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 3678888876531 2358999999999999999999999999999999999877 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccc------cCCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLV------GLPGV 801 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------g~~~~ 801 (1252)
.. ..+++.++|++|++.+++. |+.||+.+... .... +.+.+.++.+++.+..+... ....+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2346679999999877665 99999976521 1111 12334444444433222110 01225
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.+|++++|. +|
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~-~g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLD-DG 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEe-CC
Confidence 7899999999999999999999999999999999999999999999986 4899999999975 34 5699999997 58
Q ss_pred EEEEecCC
Q 000853 882 RIIYSGPL 889 (1252)
Q Consensus 882 ~~~~~g~~ 889 (1252)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 99988875
No 321
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-34 Score=318.32 Aligned_cols=199 Identities=24% Similarity=0.375 Sum_probs=166.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 377888887663 2458999999999999999999999999999999999877 45899999872
Q ss_pred CcccccceEEEEccCCCCCCC--CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPN--ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
..++|++|++.+++. .|+.+++.+. .... ++++.++++.+++.+..++. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 258999999877665 4788876431 1111 23467899999998776654 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|. + ++++.|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999999765 899999999975 5667899999984 4 688988
Q ss_pred CCC
Q 000853 888 PLG 890 (1252)
Q Consensus 888 ~~~ 890 (1252)
+++
T Consensus 203 ~~~ 205 (251)
T PRK09544 203 TPE 205 (251)
T ss_pred CHH
Confidence 864
No 322
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=358.86 Aligned_cols=221 Identities=21% Similarity=0.254 Sum_probs=180.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+... .+...+|+||||++++||++||+||||||||||+++|+|.++ +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEe
Confidence 48899998877421 112469999999999999999999999999999999999887 4589999998633
Q ss_pred C-------------cc---cc-cceEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-
Q 000853 731 V-------------QH---TF-ARISGYCEQND--IHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG- 790 (1252)
Q Consensus 731 ~-------------~~---~~-~~~~~~v~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~- 790 (1252)
. .. .. ++.+|||+|++ .+++.+||.||+.+....+. ....++.++++.++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 12 24689999997 57788999999998765421 1234455677899999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHH
Q 000853 791 --IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDI 867 (1252)
Q Consensus 791 --~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~ 867 (1252)
..+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23333 5789999999999999999999999999999999999999999999999865 899999999975 46
Q ss_pred HHHhcceeeeecCcEEEEecCCCC
Q 000853 868 FEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 868 ~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
.+.+|++++|. +|++++.|++.+
T Consensus 233 ~~~adri~vl~-~G~i~~~g~~~~ 255 (623)
T PRK10261 233 AEIADRVLVMY-QGEAVETGSVEQ 255 (623)
T ss_pred HHhCCEEEEee-CCeecccCCHHH
Confidence 67899999997 589999998643
No 323
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.8e-34 Score=313.14 Aligned_cols=209 Identities=23% Similarity=0.269 Sum_probs=165.4
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEEC--Ce-
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIG--GY- 728 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 728 (1252)
++++|+++.++.... ...++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888877642100 0012469999999999999999999999999999999999877 458999998 42
Q ss_pred -eCCc---cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000853 729 -PKVQ---HT----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLP 799 (1252)
Q Consensus 729 -~~~~---~~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~ 799 (1252)
+... .. .++.++|++|++.+++.+|+.|++.+..... ....+...+++.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 1346899999998889999999998864332 12233345567889999999753 2333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 4689999999999999999999999999999999999999999999999877999999999853 344678988776
No 324
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.6e-35 Score=324.42 Aligned_cols=221 Identities=28% Similarity=0.401 Sum_probs=182.5
Q ss_pred CCCCCcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE
Q 000853 645 LPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR 724 (1252)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~ 724 (1252)
+|.....++.+++.+-.+ ..++++|+|+||++++||.+||+||||||||||.|+|.|..+ +.+|.|.
T Consensus 328 LP~P~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VR 394 (580)
T COG4618 328 LPAPQGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVR 394 (580)
T ss_pred CCCCCceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEE
Confidence 444445688888887321 235789999999999999999999999999999999999877 5689999
Q ss_pred ECCeeCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHcCCcccccccc
Q 000853 725 IGGYPKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKA-----EFVNEVLQTIELDGIKYSLV 796 (1252)
Q Consensus 725 ~~g~~~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~ 796 (1252)
+||-+.. ++++-+++||.||+-.+|+ -||.||+. +.. .+.+.+..- ..+.|++ +.+.+-.||.+
T Consensus 395 LDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~--~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~i 466 (580)
T COG4618 395 LDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFG--EEADPEKVIEAARLAGVHELI--LRLPQGYDTRI 466 (580)
T ss_pred ecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hcc--ccCCHHHHHHHHHHcChHHHH--HhCcCCccCcc
Confidence 9998754 3567789999999987765 59999995 332 233332211 2233433 35677789999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceee
Q 000853 797 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLIL 876 (1252)
Q Consensus 797 g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~ 876 (1252)
|+.+ ..||||||||+++||||-.+|.+++||||-|+||.+.+..+.+.|.+.+++|.|+|+++|+|+ +...+|++++
T Consensus 467 G~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilv 543 (580)
T COG4618 467 GEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILV 543 (580)
T ss_pred CCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeee
Confidence 9765 689999999999999999999999999999999999999999999999999999999999985 6788999999
Q ss_pred eecCcEEEEecCCC
Q 000853 877 MKNGGRIIYSGPLG 890 (1252)
Q Consensus 877 l~~~G~~~~~g~~~ 890 (1252)
|. +|++..+|+.+
T Consensus 544 l~-~G~~~~FG~r~ 556 (580)
T COG4618 544 LQ-DGRIAAFGPRE 556 (580)
T ss_pred ec-CChHHhcCCHH
Confidence 97 59999999974
No 325
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.9e-34 Score=302.61 Aligned_cols=160 Identities=24% Similarity=0.472 Sum_probs=141.7
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcc----cccceEEEEccCC---CCCCC
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQH----TFARISGYCEQND---IHSPN 751 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 751 (1252)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 7899999999999999999999999999999999887 4589999999876432 2456799999985 46788
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 752 ITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 752 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
+|++||+.+... ||||||||++|||||+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976421 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 832 SGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||+.++..+.+.|+++.++|+|+|++||+++ ++.+.+|++++|.+ |+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999777899999999974 56677999999975 65
No 326
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.2e-34 Score=352.63 Aligned_cols=215 Identities=24% Similarity=0.278 Sum_probs=174.9
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECC-----
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG----- 727 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g----- 727 (1252)
+++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+..+.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 4677776652 3469999999999999999999999999999999999852114589999972
Q ss_pred ------------------eeCC----------c---ccccceEEEEccC-CCCCCCCCHHHHHHHHHHccCCCCCCHHHH
Q 000853 728 ------------------YPKV----------Q---HTFARISGYCEQN-DIHSPNITVEESVIFSAWLRLSPEIDLKTK 775 (1252)
Q Consensus 728 ------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~ 775 (1252)
.++. . ...++.++|++|+ +.+++.+|++|++.+...... ...++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence 2110 0 1235578999997 577788999999998754332 233445
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Q 000853 776 AEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGR 854 (1252)
Q Consensus 776 ~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~ 854 (1252)
++++.++++.+||.+..+.. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 56789999999998766554 468999999999999999999999999999999999999999999999965 489
Q ss_pred EEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 855 TVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 855 tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
|||++||+++ .+.+.||++++|.+ |++++.|+++
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHH
Confidence 9999999975 46678999999974 8999988864
No 327
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.2e-34 Score=314.36 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=166.8
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhH
Confidence 678888876632 12469999999999999999999999999999999999876 46899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCC
Q 000853 732 Q---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS-------LVGLPGV 801 (1252)
Q Consensus 732 ~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~g~~~~ 801 (1252)
. ..+++.++|++|++.+++ .|++||+.+.. ... .+++.+.++.+++.+..+. .. ...+
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~ 137 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGG 137 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCC
Confidence 2 245678999999988665 69999986431 111 1235566677776554321 11 1235
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 802 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 802 ~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++ ..+|++++|. +|
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~g 213 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLD-KG 213 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEE-CC
Confidence 78999999999999999999999999999999999999999999999864 689999999975 34 5689999997 58
Q ss_pred EEEEecC
Q 000853 882 RIIYSGP 888 (1252)
Q Consensus 882 ~~~~~g~ 888 (1252)
++++.|+
T Consensus 214 ~~~~~~~ 220 (221)
T cd03244 214 RVVEFDS 220 (221)
T ss_pred eEEecCC
Confidence 9998876
No 328
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-35 Score=320.75 Aligned_cols=209 Identities=27% Similarity=0.389 Sum_probs=162.6
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. ++.+++|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYDP------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 46777765421 2458999999999999999999999999999999999876 468999999987542
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCC
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYS-------LVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~g~~~~~ 802 (1252)
..+++.++|++|++.+++ .|++||+.+... ....+ .+.+.++..++.+..+. .. ...++
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDE----EVIEAAKAAQIHDKIMRFPDGYDTIV-GERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHH----HHHHHHHHcCcHHHHHhccccccchh-hcCCC
Confidence 234567999999987764 799999987531 11111 12333444443322111 11 11256
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ |.|||++||+++ .+ ..+|++++|.+ |+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~ 212 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GR 212 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999976 899999999975 34 55999999975 89
Q ss_pred EEEecCCC
Q 000853 883 IIYSGPLG 890 (1252)
Q Consensus 883 ~~~~g~~~ 890 (1252)
+++.|+.+
T Consensus 213 i~~~~~~~ 220 (236)
T cd03253 213 IVERGTHE 220 (236)
T ss_pred EEeeCCHH
Confidence 99988753
No 329
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-34 Score=317.13 Aligned_cols=207 Identities=26% Similarity=0.394 Sum_probs=164.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCch
Confidence 47889998877421 12358999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH-HH--HHHHHHHHHHHc--CCcccccccccCCCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDL-KT--KAEFVNEVLQTI--ELDGIKYSLVGLPGVS 802 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~-~~--~~~~~~~~l~~~--~l~~~~~~~~g~~~~~ 802 (1252)
.. ...++.++|++|++.+++ .|++||+.+..... .... .+ ....+++.++.+ |+.+..+.. ++
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~ 149 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GS 149 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CC
Confidence 32 234567999999987765 69999998753211 1110 01 112356777777 666554443 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++ ..+|++++|.+ |+
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 8999999999999999999999999999999999999999999999865 689999999975 34 56999999975 65
No 330
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.7e-34 Score=350.80 Aligned_cols=223 Identities=20% Similarity=0.260 Sum_probs=180.0
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
.++++|+++.++.. .+.+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37888888876421 01246999999999999999999999999999999999987642 2589999999
Q ss_pred eeCCcc------cc-cceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc---cccc
Q 000853 728 YPKVQH------TF-ARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI---KYSL 795 (1252)
Q Consensus 728 ~~~~~~------~~-~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~ 795 (1252)
.++... .. ++.+||++|++. +.+.+|++|++.+...... .....+..++++++++.+||.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 886421 12 246899999974 5567899999876543211 12334456778999999999753 3433
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcce
Q 000853 796 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 796 ~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+...+|++
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 5689999999999999999999999999999999999999999999999765 899999999975 466789999
Q ss_pred eeeecCcEEEEecCCCC
Q 000853 875 ILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 875 ~~l~~~G~~~~~g~~~~ 891 (1252)
++|. +|++++.|++++
T Consensus 228 ~~l~-~G~i~~~g~~~~ 243 (529)
T PRK15134 228 AVMQ-NGRCVEQNRAAT 243 (529)
T ss_pred EEEE-CCEEEEeCCHHH
Confidence 9997 489999988643
No 331
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=333.58 Aligned_cols=191 Identities=27% Similarity=0.381 Sum_probs=162.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+++++||+||+.|+.+.++..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP- 107 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 9999999998865433 467999999999999999999999986432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. +.+.+++++++.+||.+..+..+++ |||||||||+|||||
T Consensus 108 ----~~-----------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvalARAL 149 (356)
T PRK11650 108 ----KA-----------------------------EIEERVAEAARILELEPLLDRKPRE-----LSGGQRQRVAMGRAI 149 (356)
T ss_pred ----HH-----------------------------HHHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 0012357789999999888888866 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||+.++.++.+.|+++.+..+.|+|++ +|...++..++|+|++|++|+++..|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYV-THDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999877556666655 55667899999999999999999999988763
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-35 Score=302.84 Aligned_cols=192 Identities=23% Similarity=0.414 Sum_probs=167.8
Q ss_pred ceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000853 682 DITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 682 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+++|..+.-.++||-|+||||||||+|+|+|... |.+|.|.+||..... ...+|++|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 6777777757999999999999999999999988 559999999975321 2357889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
+.||.|+...- ..+..+++.+.+|+.|..++. +..|||||||||+|+|||+++|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985321 233468899999999998876 5689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 835 DARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|...+.+++-.|++++++ ..-|+.+||.++ |+..++|++++|. +|++..+|+.++
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le-~GkV~A~g~~e~ 215 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLE-NGKVKASGPLEE 215 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec-CCeEEecCcHHH
Confidence 999999999999999876 788999999875 7889999999997 599999999743
No 333
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.7e-34 Score=311.98 Aligned_cols=196 Identities=26% Similarity=0.359 Sum_probs=160.5
Q ss_pred EEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 000853 685 GTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHS--PNITVEESVIFSA 762 (1252)
Q Consensus 685 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~~tv~e~l~~~~ 762 (1252)
|++++||+++|+|+||||||||+++|+|..+ +.+|+|.+||.+.. ..++.++|++|++.+. ..+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4688999999999999999999999999877 45899999998753 2356789999998653 3489999998753
Q ss_pred Hcc-CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 000853 763 WLR-LSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 841 (1252)
Q Consensus 763 ~l~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~ 841 (1252)
... ..........++++.++++.+++.+..++. +.+||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 211 000011122345688899999998766654 45899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCc
Q 000853 842 VMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQH 892 (1252)
Q Consensus 842 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 892 (1252)
+.+.|++++++|+|||++||+++ ++.+.+|+++++ + |++++.|+.++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~~ 199 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHHh
Confidence 99999999877999999999975 567789999887 5 899999987543
No 334
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-34 Score=356.64 Aligned_cols=213 Identities=28% Similarity=0.408 Sum_probs=174.1
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. +++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeh
Confidence 5899999998742 12468999999999999999999999999999999999887 5589999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-------GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.+++. |++||+.+.. ++.+++ .+.++++..++. +..|+.+|..
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~- 451 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG- 451 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC-
Confidence 43 3567889999999988765 9999997532 122222 234444444432 2335556544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.++|+|+|++||+++ ..+.+|++++|.+
T Consensus 452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~- 528 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD- 528 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 4689999999999999999999999999999999999999999999998756899999999974 5678999999974
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 529 G~i~~~g~~~ 538 (544)
T TIGR01842 529 GRIARFGERD 538 (544)
T ss_pred CEEEeeCCHH
Confidence 8999999864
No 335
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.3e-34 Score=359.64 Aligned_cols=211 Identities=27% Similarity=0.388 Sum_probs=176.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+|++++|||+++|+|+||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEh
Confidence 5899999998742 1358999999999999999999999999999999999987 4589999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.++. .|++||+.++. ++.+ +++++++++.+++.+ ..|+.+|..
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~- 468 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGER- 468 (588)
T ss_pred hhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCC-
Confidence 43 457788999999998764 69999998741 1222 233566666666543 346666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++.+ ++|+|++||++ +..+.+|++++|. +
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~--~~~~~~D~ii~l~-~ 544 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRL--STVRNADRILVFD-N 544 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecH--HHHHhCCEEEEEE-C
Confidence 467999999999999999999999999999999999999999999998854 89999999996 4578899999997 5
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 545 G~i~~~g~~~ 554 (588)
T PRK13657 545 GRVVESGSFD 554 (588)
T ss_pred CEEEEeCCHH
Confidence 8999999864
No 336
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.7e-34 Score=300.78 Aligned_cols=175 Identities=26% Similarity=0.486 Sum_probs=148.5
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. .++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+...
T Consensus 2 ~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (178)
T cd03247 2 SINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSD 68 (178)
T ss_pred EEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHH
Confidence 56777766531 11358999999999999999999999999999999999876 458999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000853 733 --HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 733 --~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrq 810 (1252)
..+++.++|++|++.+++ .|++||+ +..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~q 105 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQ 105 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHH
Confidence 234667899999987665 6898886 2479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 811 rv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
|++|||||+.+|++|+|||||+|||+.+++.+++.|+++. ++.|||++||+++ ++ +.+|++++|. +|++++.|
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~-~g~i~~~~ 178 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLE-NGKIIMQG 178 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999985 4899999999975 34 5789999997 58888754
No 337
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.8e-34 Score=303.92 Aligned_cols=183 Identities=26% Similarity=0.343 Sum_probs=152.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++.+++|+||++++||+++|+|+||||||||+++|+|.....+.+|+|.+||.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 4667776542 245899999999999999999999999999999999984212568999999988643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 733 H---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 733 ~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. . .++.++|++|++.+++..|+++++. .. .+.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHHH
Confidence 2 1 2345999999988888888877650 00 13799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH-HhcceeeeecCcEEEEec
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFE-AFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~~G~~~~~g 887 (1252)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++++|||++||+++ .+.+ .+|++++|. +|++++.|
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~-~G~i~~~~ 187 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY-DGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999877899999999975 3444 689999997 58999998
Q ss_pred CC
Q 000853 888 PL 889 (1252)
Q Consensus 888 ~~ 889 (1252)
+.
T Consensus 188 ~~ 189 (200)
T cd03217 188 DK 189 (200)
T ss_pred cH
Confidence 54
No 338
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.2e-34 Score=298.75 Aligned_cols=168 Identities=29% Similarity=0.484 Sum_probs=145.1
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. +++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 46777765531 12458999999999999999999999999999999999877 458999999987542
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
..+++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234667999999987766 4999886 999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
||++|||+|+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ..+.+|++++|.+ |+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-G~ 172 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CC
Confidence 9999999999999999999999999999999999999999877999999999874 3467999999975 65
No 339
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=331.33 Aligned_cols=191 Identities=24% Similarity=0.393 Sum_probs=162.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+|+++||+||+.|+.+.++...
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 47999999999999999999999987 9999999998865444 4679999999999999999999999865432100
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. +.+.+++++++.+||.+..+..+.+ |||||||||+|||||
T Consensus 111 -----~-----------------------------~~~~~v~~~l~~~gl~~~~~r~~~~-----LSgGq~QRVaLARaL 151 (351)
T PRK11432 111 -----E-----------------------------ERKQRVKEALELVDLAGFEDRYVDQ-----ISGGQQQRVALARAL 151 (351)
T ss_pred -----H-----------------------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 0 0112457789999999888887765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||+.++.++.+.|+++.+..+.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999987755666655 556677899999999999999999999988763
No 340
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.1e-34 Score=331.97 Aligned_cols=191 Identities=24% Similarity=0.400 Sum_probs=162.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+|+++||+||+.|+.+.+...
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG- 107 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999987 9999999998865433 467999999999999999999999986432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. +.+.+++++++.+||.+..++.+.+ |||||||||+|||||
T Consensus 108 ----~~-----------------------------~~~~~~~~~l~~l~L~~~~~~~~~~-----LSgGq~QRvaLARaL 149 (353)
T TIGR03265 108 ----RA-----------------------------EVAERVAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARAL 149 (353)
T ss_pred ----HH-----------------------------HHHHHHHHHHHHcCCCchhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 0112457899999999988888765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||+.++.++.+.|+++.+..+.|+|++ +|...++..++|+|++|++|++++.|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~v-THd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV-THDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999877656666665 55667999999999999999999999988774
No 341
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.2e-34 Score=355.72 Aligned_cols=192 Identities=27% Similarity=0.444 Sum_probs=159.7
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+|+||||||||+|+|+|+++|. +|+|.+||.++..... |+.++||+|++.+| +.||+||+.++..
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p----- 572 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNP----- 572 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCCC-----
Confidence 7999999999999999999999997 9999999999876553 68899999976665 5799999987531
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
....+++.++.+.++. . +. ...+|.++||.||| ++.+||||||||++||||
T Consensus 573 --~~~~e~i~~A~~~ag~------------------~-----~f---I~~lP~gy~t~v~E-~G~~LSGGQrQrlalARa 623 (709)
T COG2274 573 --EATDEEIIEAAQLAGA------------------H-----EF---IENLPMGYDTPVGE-GGANLSGGQRQRLALARA 623 (709)
T ss_pred --CCCHHHHHHHHHHhCc------------------H-----HH---HHhccccccccccc-CCCCCCHHHHHHHHHHHH
Confidence 1122333333333221 1 22 23499999999998 567799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|+||+||||||+||+.++..|.+.|+++. .++|+|+..|.+ .+.+.||||+||++|+++++|+++++.+
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCceeccCCHHHHHH
Confidence 999999999999999999999999999999885 467888776654 6889999999999999999999999875
No 342
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.5e-34 Score=354.03 Aligned_cols=188 Identities=27% Similarity=0.416 Sum_probs=158.9
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.|+. ++.+|+|+|++++|||++||+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 35999999998742 1348999999999999999999999999999999999987 569999999987
Q ss_pred CC--cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 730 KV--QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 730 ~~--~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
+. ..++++.++||||++.++. -|++||+.++. ++.+ +++++++++..++.+ ..|+.+|+.+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 54 4567789999999998765 59999998752 1222 344677777777654 3477787654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQP 863 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 863 (1252)
.+||||||||++|||||+++|+||+||||||+||++++..|++.|+++. +++|+|+++|++
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 6799999999999999999999999999999999999999999999874 489999999974
No 343
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4e-34 Score=328.44 Aligned_cols=191 Identities=21% Similarity=0.320 Sum_probs=162.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++++||+||+.|+.+
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998875443 4579999999999999999999999765
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
..+.. .+ +.+.++.++++.+||++..++.+++ |||||||||
T Consensus 98 ~~~~~-----~~-----------------------------~~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV 138 (363)
T TIGR01186 98 LLGWP-----EQ-----------------------------ERKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRV 138 (363)
T ss_pred HcCCC-----HH-----------------------------HHHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHH
Confidence 43210 00 0112357788999998888888876 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|||||+.+|+||||||||++||+.++.++.+.++++.+..++|+++ ++|...++.+++|+|++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~-vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF-ITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999987655666665 45667789999999999999999999998876
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 218 ~ 218 (363)
T TIGR01186 218 L 218 (363)
T ss_pred H
Confidence 4
No 344
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-33 Score=282.55 Aligned_cols=230 Identities=25% Similarity=0.336 Sum_probs=191.8
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++.+|+++++.. +++||++||++|++||+.+||||||||||||.++|+|......++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~~------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVEG------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEecC------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 4788999987742 1579999999999999999999999999999999999877778899999999987
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCC
Q 000853 731 VQH----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-IKYSLVGLPGVSGLS 805 (1252)
Q Consensus 731 ~~~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~~~~~lS 805 (1252)
... ..|.-+..-+|.|.-++..|+.+-|..+...+...+....+..+.+++.++.+++.. ..++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 542 234557888999999999999999998765533211112345567889999999987 3444432 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHh--cceeeeecCcEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAF--DDLILMKNGGRI 883 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~~~~l~~~G~~ 883 (1252)
||||||.-|+..++.+|++.+||||-||||..+-+.+-+.++++++.|.+++++||.. .+.+.. |++.+|.+ |+|
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998899999999973 577777 99999985 999
Q ss_pred EEecCCCCcchhHHHHHhhCC
Q 000853 884 IYSGPLGQHSCKVIDYFESIP 904 (1252)
Q Consensus 884 ~~~g~~~~~~~~~~~~f~~~~ 904 (1252)
+..|.+ ++.++++..+
T Consensus 224 v~sG~~-----el~~~le~~g 239 (251)
T COG0396 224 VKSGDP-----ELAEELEEKG 239 (251)
T ss_pred EecCCH-----HHHHHHHHhc
Confidence 999996 4566666653
No 345
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-33 Score=304.22 Aligned_cols=199 Identities=21% Similarity=0.283 Sum_probs=160.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ..+.+++|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEh
Confidence 4788998887632 12358999999999999999999999999999999999877 4589999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.. ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +. .+..||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHH
Confidence 32 234567999999997765 59999996421 1111 12333333 2 11 24689999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||||++|||+|+.+|++++|||||+|||+.++..+++.|+++. +|+|+|++||+++ .+ ..+|++++|.+ |+++..|
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~~-g~i~~~g 205 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMDA-GEVKEYD 205 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999999985 4899999999875 34 45899999975 8998887
Q ss_pred CC
Q 000853 888 PL 889 (1252)
Q Consensus 888 ~~ 889 (1252)
++
T Consensus 206 ~~ 207 (207)
T cd03369 206 HP 207 (207)
T ss_pred CC
Confidence 63
No 346
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-34 Score=306.89 Aligned_cols=190 Identities=27% Similarity=0.385 Sum_probs=163.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCC----CccccceEEEecccc-ccCCCCCHHHHHHHHHhccC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLD----EFVPQKTSAYISQYD-LHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~----~~~~~~~~~yv~Q~~-~~~~~lTV~e~l~f~~~~~~ 76 (1252)
++|+||||||||||+++|+|++.|+ +|+|.++|.+.+ ....++.+|||.|++ ..+...||.|.+.|+.+..+
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 7899999999999999999999997 899999999865 233467899999986 46778899999999987654
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
... ++ .+.+++++++.+|+.+.++..+-+ |||||||||+||
T Consensus 110 ~~~-----~e-----------------------------~~~rv~~~l~~vgl~~~~~r~p~~-----LSGGqkqRvaIA 150 (235)
T COG1122 110 LPR-----EE-----------------------------IEERVAEALELVGLEELLDRPPFN-----LSGGQKQRVAIA 150 (235)
T ss_pred CCH-----HH-----------------------------HHHHHHHHHHHcCchhhccCCccc-----cCCcceeeHHhh
Confidence 311 01 123568899999999998888765 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
.+|+.+|++|+|||||||||+..+.++++.++++....+.|+|+ ++|....+..++|++++|++|+++.+|++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~-~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII-VTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE-EeCcHHHHHhhCCEEEEEECCEEeecCCHHHHh
Confidence 99999999999999999999999999999999998765566655 567788999999999999999999999876664
No 347
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.4e-34 Score=355.85 Aligned_cols=214 Identities=25% Similarity=0.374 Sum_probs=178.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 330 ~i~~~~v~f~y~~~-----------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-----------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCCC-----------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeH
Confidence 58999999987421 2468999999999999999999999999999999999987 4589999999885
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-------IKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.++ +.|++||+.++. +.+.+ +++++++++.+++.+ ..|+.+|..
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~- 466 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLF-NDTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN- 466 (571)
T ss_pred HhcCHHHHHhhceEEccCcccc-cccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-
Confidence 43 45678899999999775 569999998652 11222 344677788777653 345667655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
.++||||||||++|||+++++|+|++||||||+||+.+++.+++.|+++.+ ++|+|++||++ +....+|+++++. +
T Consensus 467 g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~--~~~~~~D~ii~l~-~ 542 (571)
T TIGR02203 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRL--STIEKADRIVVMD-D 542 (571)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhh--HHHHhCCEEEEEe-C
Confidence 368999999999999999999999999999999999999999999999854 79999999986 4578899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|+++..|+.++
T Consensus 543 g~i~~~g~~~~ 553 (571)
T TIGR02203 543 GRIVERGTHNE 553 (571)
T ss_pred CEEEeeCCHHH
Confidence 89999998643
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.9e-34 Score=301.01 Aligned_cols=165 Identities=30% Similarity=0.486 Sum_probs=139.5
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~t 753 (1252)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 458999999999999999999999999999999999877 458999999987532 123344666666
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
+++.+++.+..++. +..||||||||++|||+|+.+|++++|||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 56666766554433 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEec
Q 000853 834 LDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSG 887 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 887 (1252)
||+.++..+.+.|++++++ ++|+|++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999776 899999999975 45678999999974 8887654
No 349
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.5e-34 Score=319.28 Aligned_cols=212 Identities=22% Similarity=0.291 Sum_probs=165.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. .++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 19 ~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 85 (257)
T cd03288 19 EIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDI 85 (257)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEh
Confidence 5889999887632 12468999999999999999999999999999999999876 5689999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY-------SLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~g~~~ 800 (1252)
.. ..+++.++|++|++.+++ .|++||+.... .... +.+.+.++..++.+..+ +..+ ..
T Consensus 86 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~ 153 (257)
T cd03288 86 SKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVT-EG 153 (257)
T ss_pred hhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEec-cC
Confidence 43 245677999999987765 59999875321 1111 12333444444432221 1121 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ .+ ..+|++++|. +
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~-~~~dri~~l~-~ 229 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TI-LDADLVLVLS-R 229 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HH-HhCCEEEEEE-C
Confidence 46899999999999999999999999999999999999999999999875 4899999999976 34 4599999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|++++
T Consensus 230 G~i~~~g~~~~ 240 (257)
T cd03288 230 GILVECDTPEN 240 (257)
T ss_pred CEEEEeCCHHH
Confidence 89999998643
No 350
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.7e-34 Score=326.33 Aligned_cols=190 Identities=24% Similarity=0.333 Sum_probs=161.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... .++.++|++|+..+++..||+||+.|....
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 47899999999999999999999987 999999999886543 245799999999999999999999987543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. +. +.+.++.++++.+||.+..|..+++ |||||||||+
T Consensus 110 ~~~~------~~----------------------------~~~~~v~e~l~~vgL~~~~~~~~~~-----LSgGqkQRV~ 150 (343)
T TIGR02314 110 DNTP------KD----------------------------EIKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRVA 150 (343)
T ss_pred cCCC------HH----------------------------HHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHH
Confidence 2110 00 0112357789999999888888766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||||+.+|++|+||||||+||+.++.++.+.|+++.+..+.|++++ +|....+.+.||+|++|++|++++.|+++++
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiili-TH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI-THEMDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999987556776665 5566788899999999999999999998776
No 351
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.3e-34 Score=328.81 Aligned_cols=191 Identities=24% Similarity=0.384 Sum_probs=162.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCcee--EEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVS--GEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~--G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+|||||||||||++|+|+.+|+ + |+|.++|.++....+ ++.++||+|+..+++.+||+||+.|+.+.+..
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 7 999999998765433 45799999999999999999999998653211
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
. .. +.+.+++++++.+||.+..++.+++ |||||||||+|||
T Consensus 110 ~------~~----------------------------~~~~~v~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvaLAR 150 (362)
T TIGR03258 110 P------KA----------------------------DIAERVADALKLVGLGDAAAHLPAQ-----LSGGMQQRIAIAR 150 (362)
T ss_pred C------HH----------------------------HHHHHHHHHHHhcCCCchhhCChhh-----CCHHHHHHHHHHH
Confidence 0 00 0112357889999999988888866 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhc-CCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHIT-DATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~-~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
||+.+|++||||||||+||+.++.++.+.|+++.+.. +.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~-vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC-VTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999987654 455554 566777899999999999999999999988874
No 352
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.1e-34 Score=330.02 Aligned_cols=191 Identities=26% Similarity=0.366 Sum_probs=162.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+|+++||+||+.|+.+.++..
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 117 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP- 117 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC-
Confidence 47999999999999999999999987 9999999998865433 467999999999999999999999976432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. +.+.+++++++.+||.+..++.+.+ |||||||||+|||||
T Consensus 118 -----~~----------------------------~~~~~~~~~l~~~~l~~~~~~~p~~-----LSgGq~QRVaLARaL 159 (375)
T PRK09452 118 -----AA----------------------------EITPRVMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAV 159 (375)
T ss_pred -----HH----------------------------HHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 0012357789999999888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||..++.++.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~-vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF-VTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998765666655 556677899999999999999999999988763
No 353
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.4e-34 Score=324.03 Aligned_cols=191 Identities=27% Similarity=0.362 Sum_probs=161.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|.++.++..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999999875432 3467999999999999999999999866543210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ ...+++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 112 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~a 152 (306)
T PRK13537 112 -----AAA-----------------------------ARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARA 152 (306)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHHH
Confidence 000 011346788999999989998876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++|+|||||+|||+.++.++++.|+++.+ .|.|++++ +|...++.++||+|++|++|++++.|+++++.+
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~-sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999864 46666665 556678999999999999999999999888754
No 354
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.9e-34 Score=353.41 Aligned_cols=213 Identities=23% Similarity=0.358 Sum_probs=175.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. +++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEH
Confidence 4889999987742 12468999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-------GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.++. .|++||+.++. ++.++ +.++++++..++. +..++.+|..
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 448 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER- 448 (569)
T ss_pred hhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC-
Confidence 43 356788999999998775 59999997642 12222 3355566666554 3345666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ....+|++++|. +
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~-~ 524 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ-H 524 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe-C
Confidence 46899999999999999999999999999999999999999999999985 5899999999974 457899999997 5
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 525 G~i~~~g~~~~ 535 (569)
T PRK10789 525 GHIAQRGNHDQ 535 (569)
T ss_pred CEEEEecCHHH
Confidence 89999998643
No 355
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=315.18 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+++++++..++ ...+++|||++|++||+.||+|.||||||||+++|.|.+. |++|+|.+||+++
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 467777776553 3568999999999999999999999999999999999988 5699999999985
Q ss_pred Cc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000853 731 VQ----HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLST 806 (1252)
Q Consensus 731 ~~----~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSg 806 (1252)
.- ...+.-||+|.|+..+.+++||.||+..+..-......+.+...++++++.+..||.-..+.++ ..||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCc
Confidence 42 2345578999999999999999999998764322234466777888999999999988777775 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 807 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 807 Gqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||||.|-++|.++|++|||||||+-|-|...+++.++|++++++|+|||++||... |+.+.+|++.+|.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999986 78899999999975 888766
Q ss_pred cC
Q 000853 887 GP 888 (1252)
Q Consensus 887 g~ 888 (1252)
-+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 65
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.6e-34 Score=346.54 Aligned_cols=208 Identities=16% Similarity=0.223 Sum_probs=172.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCccc
Confidence 377888887663 2359999999999999999999999999999999999877 4589999998764
Q ss_pred Cc---ccccceEEEEccCCCCC--------CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000853 731 VQ---HTFARISGYCEQNDIHS--------PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLP 799 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~--------~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 799 (1252)
.. ...++.++|++|++... ..+|++|++.+. ...+++++++++.++|.+..+..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~---- 132 (490)
T PRK10938 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR---- 132 (490)
T ss_pred ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC----
Confidence 32 22345689999986431 146888876431 12245678999999998776655
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 800 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 800 ~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
+.+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|.
T Consensus 133 -~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~- 209 (490)
T PRK10938 133 -FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLA- 209 (490)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999999877999999999975 5667889999997
Q ss_pred CcEEEEecCCCC
Q 000853 880 GGRIIYSGPLGQ 891 (1252)
Q Consensus 880 ~G~~~~~g~~~~ 891 (1252)
+|++++.|++++
T Consensus 210 ~G~i~~~~~~~~ 221 (490)
T PRK10938 210 DCTLAETGEREE 221 (490)
T ss_pred CCEEEEeCCHHH
Confidence 589999998643
No 357
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.7e-33 Score=349.68 Aligned_cols=212 Identities=25% Similarity=0.307 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEh
Confidence 5899999987742 1358999999999999999999999999999999999887 4689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELD-------GIKYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~g~~~ 800 (1252)
.. ..+++.++|++|++.++. .|++||+.++. ++.+++ .+.++++..++. +..++.+|..
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~~~~a~~~~~~~~~i~~l~~g~~t~~~~~- 468 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR-----EGATDE----EVYEAAKAAAAHDFILKRSNGYDTLVGER- 468 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhccccccchhcCC-
Confidence 43 356788999999987764 69999998742 122222 233444444333 2335555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++|||||+++|++|+|||||||||+.+++.+.+.|+++. +++|+|++||+++ ....+|++++|.+
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~- 544 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ- 544 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC-
Confidence 46899999999999999999999999999999999999999999999885 4899999999974 4577999999975
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|++++.|+.++
T Consensus 545 G~i~~~g~~~~ 555 (585)
T TIGR01192 545 GRLIEKGSFQE 555 (585)
T ss_pred CEEEEECCHHH
Confidence 89999998643
No 358
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-34 Score=321.78 Aligned_cols=191 Identities=24% Similarity=0.376 Sum_probs=158.8
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+||+|+|||||||++++|.++.+ . +|+|.+||+++++.. .|+.+|||||+..+| +.||.+||.|+.
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn------ 449 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN------ 449 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC------
Confidence 79999999999999999999998 4 899999999987654 467899999966655 579999999864
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
.....+++.+++|.++.. |. ...|+++++|.||+. ++-|||||||||++|||
T Consensus 450 -~sas~eeV~e~~k~a~~h-----------------------d~---i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 450 -PSASDEEVVEACKRAGLH-----------------------DV---ISRLPDGYQTLVGER-GLMLSGGEKQRVSLARA 501 (591)
T ss_pred -CCcCHHHHHHHHHHcCcH-----------------------HH---HHhccccchhhHhhc-ccccccchHHHHHHHHH
Confidence 233445555555544332 11 234899999999982 23379999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+|++||||||+||++++.++++.+.+. ..++|+|+..|.. .+...||+|++|++|++.+.|+++++..
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999999999884 3678888877644 5888999999999999999999999865
No 359
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-34 Score=292.60 Aligned_cols=218 Identities=22% Similarity=0.346 Sum_probs=180.6
Q ss_pred CcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCe
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 728 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 728 (1252)
+.-++++|++..+ +++.+|+|+|++|+|||..+|+|||||||||||++++|...+ .+|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p--ssg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP--SSGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC--CCCceeeeee
Confidence 3458899988765 357899999999999999999999999999999999998774 4899999998
Q ss_pred eCCc----ccccceEEEEccCC--CCCCCCCHHHHHHHH--HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 729 PKVQ----HTFARISGYCEQND--IHSPNITVEESVIFS--AWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 729 ~~~~----~~~~~~~~~v~q~~--~~~~~~tv~e~l~~~--~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
...+ .+.|+.||+|.-.. .+.+..+|+|-+.-+ +..-.......++..+++..+++.+|+.+.+++..
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~---- 169 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF---- 169 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch----
Confidence 7532 45688999997542 345678888877533 22222221233455677899999999999888764
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCCHHHHHHhcceeeee
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET--GRTVVCTIHQPSIDIFEAFDDLILMK 878 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~ 878 (1252)
..||-||||||-|||||+++|++||||||++|||...++.+.+.|.+++.. +.++|+|||+.+ |+-..+++++++.
T Consensus 170 -~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~ 247 (257)
T COG1119 170 -GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK 247 (257)
T ss_pred -hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEee
Confidence 589999999999999999999999999999999999999999999999865 789999999986 7888999999997
Q ss_pred cCcEEEEecC
Q 000853 879 NGGRIIYSGP 888 (1252)
Q Consensus 879 ~~G~~~~~g~ 888 (1252)
+ |++++.|.
T Consensus 248 ~-g~v~~~g~ 256 (257)
T COG1119 248 E-GEVVAQGK 256 (257)
T ss_pred C-Cceeeccc
Confidence 4 89999874
No 360
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=294.79 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=171.9
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc--ccccceEEEEc-cCCCCCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ--HTFARISGYCE-QNDIHSPNIT 753 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~~t 753 (1252)
..+++||||+|++|+++|++|||||||||+||+|+|... |.+|.|.++|.+.-. +.+-+.+++|+ |...+...+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 458999999999999999999999999999999999887 569999999986432 34455667765 3344556667
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
+.|.+.....+. +.+.++-+++.+.+.+.++|++..+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888877665554 455666778889999999998877655 478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCC
Q 000853 834 LDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 890 (1252)
||..++..|.+.|++..+ .+.||+.+||+.+ ++...||++++++. |+++|+|+..
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 999999999999999875 4999999999987 79999999999975 9999999974
No 361
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=285.25 Aligned_cols=193 Identities=22% Similarity=0.360 Sum_probs=164.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
++.++|||||||||.+.++.|+.+|+ +|+|.+||.+++.... +.-+||.||+...|-.+||+|||....+.+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 47899999999999999999999998 9999999999987654 2348999999999999999999987665432
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. .+. .+.+.+.+.+|+.+++.|.++.+-.. ||||||||+.||
T Consensus 109 ~d-----~~~---------------------------~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIA 151 (243)
T COG1137 109 KD-----LKK---------------------------AERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEIA 151 (243)
T ss_pred cc-----hhH---------------------------HHHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHHH
Confidence 10 000 01123457899999999999987655 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|||+.+|+.++||||++|+||.+..+|.+.++++.. .|-.+++ +.|.-.|++..|||.+++++|++..+|+++++.+
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLI-TDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLI-TDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEE-ccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999999976 4555555 5788889999999999999999999999988753
No 362
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.8e-34 Score=354.70 Aligned_cols=213 Identities=27% Similarity=0.387 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. .++.+|+|+|++++|||+++|+|+||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 58999999987431 12469999999999999999999999999999999999887 4589999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-------KYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~ 800 (1252)
.. ..+++.++|+||++.++ +.|++||+.++. ++.+ +++++++++..++.+. .++.+|..
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~-----~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~- 473 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLF-AASVMENIRYGR-----PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER- 473 (576)
T ss_pred HhcCHHHHHHhceEEccCCccc-cccHHHHHhcCC-----CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-
Confidence 43 45677899999998765 569999997641 1222 2346677777776432 34555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..+||||||||++||||++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||++ +....+|+++++.+
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~- 549 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQ- 549 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC-
Confidence 46899999999999999999999999999999999999999999999985 489999999986 45678999999974
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|++++.|+.+
T Consensus 550 g~~~~~g~~~ 559 (576)
T TIGR02204 550 GRIVAQGTHA 559 (576)
T ss_pred CEEEeeecHH
Confidence 8999999864
No 363
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.6e-33 Score=297.94 Aligned_cols=191 Identities=19% Similarity=0.266 Sum_probs=156.2
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+++ +||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 56788877652 233555 999999999999999999999999999999877 45899999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000853 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKR 811 (1252)
Q Consensus 732 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqr 811 (1252)
... ++.++|++|++..++..|++||+.+....+. ..+++.++++.+++.+..++. ++.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 3458999999877788999999988653321 134567888999987766554 46899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcce
Q 000853 812 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDL 874 (1252)
Q Consensus 812 v~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 874 (1252)
++|||+++.+|++++|||||+|||+.++..+.+.|++..++|+|||++||+++ ....+|.+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999877667999999999975 33445543
No 364
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=289.00 Aligned_cols=190 Identities=23% Similarity=0.383 Sum_probs=158.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||+||||||++|+|..++. +|+|.++|++++...+ +.-++||||....|+.+||+|||..++..+.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 58999999999999999999999986 9999999999987655 3568999999999999999999998764321
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHh-CCcccccccccCCcccccCccccchhHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKIL-GLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
.. ... +...|++.+.+ .|.+.++++-|+ |||||||-++|
T Consensus 108 ~~-~~~----------------------------------~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAi 147 (237)
T COG0410 108 DK-EAQ----------------------------------ERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAI 147 (237)
T ss_pred cc-ccc----------------------------------cccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHH
Confidence 10 000 00023333333 255566777777 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
||||+++|++|+|||||.||-|.-..+|.+.++++.+..+ .+|+.+.|....+++.+||.+||.+|++++.|+.+++.
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g-~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG-MTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC-cEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999987555 56666899999999999999999999999999988874
No 365
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.6e-33 Score=288.04 Aligned_cols=157 Identities=25% Similarity=0.419 Sum_probs=135.9
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++ ++++++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 66 (163)
T cd03216 2 ELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSF 66 (163)
T ss_pred EEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCc
Confidence 4677777653 2358999999999999999999999999999999999887 458999999987543
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000853 733 H----TFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQ 808 (1252)
Q Consensus 733 ~----~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGq 808 (1252)
. ..++.++|++| |||||
T Consensus 67 ~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~ 87 (163)
T cd03216 67 ASPRDARRAGIAMVYQ-----------------------------------------------------------LSVGE 87 (163)
T ss_pred CCHHHHHhcCeEEEEe-----------------------------------------------------------cCHHH
Confidence 1 13445777777 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEE
Q 000853 809 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIY 885 (1252)
Q Consensus 809 rqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 885 (1252)
|||++|||+|+.+|++++|||||+|||+.+++.+.+.|++++++|.|||++||+++ ++.+.+|++++|.+ |++++
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 99999999999999999999999999999999999999999877999999999864 46677899999974 88765
No 366
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.2e-33 Score=288.45 Aligned_cols=164 Identities=27% Similarity=0.380 Sum_probs=141.3
Q ss_pred EEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 2 ~~~~~~~~~~~------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~---- 63 (166)
T cd03223 2 ELENLSLATPD------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEEcCC------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC----
Confidence 46777765521 2458999999999999999999999999999999999877 45899999874
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000853 733 HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRL 812 (1252)
Q Consensus 733 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv 812 (1252)
+.++|++|++.+ +..|++||+.+. ....||||||||+
T Consensus 64 ----~~i~~~~q~~~~-~~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYL-PLGTLREQLIYP--------------------------------------WDDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCcc-ccccHHHHhhcc--------------------------------------CCCCCCHHHHHHH
Confidence 468999999865 467999998642 0257999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcE
Q 000853 813 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 813 ~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 882 (1252)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ....+|++++|.++|.
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 9999999999999999999999999999999999986 689999999975 4578999999987763
No 367
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-33 Score=324.42 Aligned_cols=192 Identities=30% Similarity=0.431 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|+|+||||||||+++|+|+.+|+ +|+|.+||.+.++.. +++.++||+|++.+++ .|+||||.++..
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~---- 420 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP---- 420 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC----
Confidence 48999999999999999999999987 999999999876654 5688999999877765 699999998632
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
....+++++..+.. .+.+...-+++.||.+|+ +++||||||+|||++||
T Consensus 421 ---~~s~e~i~~al~~a---------------------------~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 421 ---DASDEEIIAALDQA---------------------------GLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALAR 469 (559)
T ss_pred ---cCCHHHHHHHHHHh---------------------------cHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHH
Confidence 11222222221111 122222236788999998 67889999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++++++++++||||++||.+++..|.+.|.++++ ++|+++..|. .+....+|+|++|++|++++.|+++++.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHr--l~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcC--hHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999975 4777776554 46777899999999999999999988743
No 368
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.1e-33 Score=323.63 Aligned_cols=195 Identities=24% Similarity=0.385 Sum_probs=161.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||+||+.|+.+......
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 47999999999999999999999987 9999999998765433 3579999999999999999999999764311000
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. ... +.+.+++++++.+||++..++.+.+ |||||||||+|||||
T Consensus 107 ~~-~~~-----------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalArAL 151 (353)
T PRK10851 107 RP-NAA-----------------------------AIKAKVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARAL 151 (353)
T ss_pred CC-CHH-----------------------------HHHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 000 0112357889999999888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+++ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~-vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999987655666555 566778999999999999999999999988763
No 369
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-33 Score=326.84 Aligned_cols=191 Identities=23% Similarity=0.351 Sum_probs=161.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|+.+|+ +|+|.++|++++...+ ++.++||+|+..+|+++||.||+.|+.+.+...
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 122 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP- 122 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC-
Confidence 47899999999999999999999987 9999999998765433 467999999999999999999999976432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
..+ .+.+++++++.+||.+..++.+.+ |||||||||+|||||
T Consensus 123 ----~~~-----------------------------~~~~v~~~l~~l~L~~~~~~~~~~-----LSgGq~QRVaLARAL 164 (377)
T PRK11607 123 ----KAE-----------------------------IASRVNEMLGLVHMQEFAKRKPHQ-----LSGGQRQRVALARSL 164 (377)
T ss_pred ----HHH-----------------------------HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 000 112357789999999888887765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++||||||||+||..++.++.+.|+++.+..+.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM-VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999887655666655 456677999999999999999999999988764
No 370
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.1e-33 Score=320.63 Aligned_cols=185 Identities=29% Similarity=0.392 Sum_probs=159.0
Q ss_pred EecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 000853 695 LMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLK 773 (1252)
Q Consensus 695 i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~ 773 (1252)
|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.|....+. ...+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK---VPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC---CCHH
Confidence 689999999999999999887 458999999988643 2235679999999999999999999999765432 2334
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 000853 774 TKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET- 852 (1252)
Q Consensus 774 ~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~- 852 (1252)
+.+++++++++.++|.+..++. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4456789999999998776665 4689999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 853 GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 853 g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
|+|||++||+++ ++...+|++++|. +|+++..|++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~-~G~i~~~g~~~~ 187 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMR-KGKIAQIGTPEE 187 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 899999999975 5777899999997 589999998754
No 371
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.6e-33 Score=320.84 Aligned_cols=191 Identities=26% Similarity=0.410 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.++.++..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47899999999999999999999987 999999998875421 2456899999999999999999999876543210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+.+++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 98 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 138 (302)
T TIGR01188 98 -----KDE-----------------------------AEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAAS 138 (302)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHH
Confidence 000 012357789999999888888876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++|+|||||+|||+.++..+++.|+++.+ .+.|++++ +|...++.+.||+|++|++|++++.|+++++.+
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~-sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999875 46666665 556678899999999999999999999887754
No 372
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=292.12 Aligned_cols=204 Identities=24% Similarity=0.366 Sum_probs=167.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccc----eEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQK----TSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~----~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+.+ -++--+|...+|+++||.||+.-++..+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 47999999999999999999999998 999999999998776543 35667899999999999999998765331
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. .. . .... +. ..+ ...+...++.++|+.+||.+.+|+..|+ ||+||||||.||
T Consensus 109 ~---~~---~------~l~~-~~-~~~--------~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIA 161 (250)
T COG0411 109 G---LS---G------LLGR-PR-ARK--------EEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIA 161 (250)
T ss_pred h---hh---h------hhcc-cc-chh--------hHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHH
Confidence 1 00 0 0000 00 000 0001123468899999999999999998 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|||+++|++|+||||.+||.+....++.+.++++.+.. ..+++.+.|..+-+..+||||+||+.|+++..|+++++.+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~-g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999999998644 4555668899999999999999999999999999998753
No 373
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-33 Score=309.26 Aligned_cols=191 Identities=25% Similarity=0.342 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 47999999999999999999999987 999999998875432 245689999999899999999999886432
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
... . ...+ .+.+++++++.+||.+..++.+++ |||||||||+
T Consensus 105 ~~~---~-~~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ 146 (235)
T cd03261 105 HTR---L-SEEE-----------------------------IREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVA 146 (235)
T ss_pred ccC---C-CHHH-----------------------------HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHH
Confidence 100 0 0000 012346788899998877888766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+||+.+|+||+|||||+|||+.++..+.+.|+++++..+.+++++. |...++..+||+|++|++|++++.|+++++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vs-H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT-HDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999998764466766655 555678889999999999999999987654
No 374
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=5.7e-32 Score=346.71 Aligned_cols=206 Identities=25% Similarity=0.400 Sum_probs=183.2
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc----ccccceEEEEccCCCCCCCCCH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ----HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
+++++|+.|++||+.|++|+|||||||++|+|+|..+ +++|++.++|.++.. .+.++.+|||||+|.+.+.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 9999999999999999999999999999999999887 569999999988653 2367889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
||++.+.+++|+-+ .++.++.++..++.++|.+..++.+ +.+|||+|||+++|.|++.+|++++|||||+|+
T Consensus 658 rEhL~~~arlrG~~---~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLRGLP---RSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHcCCC---hhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 99999999998643 3445566999999999999998874 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHH
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYF 900 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f 900 (1252)
||.+++.++++++++.++|+.||+|||.++ |....|||+.+|.+ |++..-|++ ++++..|
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ciGs~----q~LKsrf 789 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCIGSP----QELKSRY 789 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEecCh----HHHHhhc
Confidence 999999999999999988889999999764 56678999999985 899999997 3444444
No 375
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.2e-33 Score=303.78 Aligned_cols=200 Identities=22% Similarity=0.255 Sum_probs=160.9
Q ss_pred cccceeEEEe-----CCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000853 679 LLSDITGTFR-----PGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 679 ~l~~vs~~i~-----~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~t 753 (1252)
.++|++++++ +||+++|+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+....+..|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5667777775 799999999999999999999999877 45899999984 4799999987777899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
|+|++.+...... . ..+...++++.+++.+..++. +..|||||||||+||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432111 0 112357788999998766554 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEE--EecCCCCcchhHHHHHhhC
Q 000853 834 LDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRII--YSGPLGQHSCKVIDYFESI 903 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~--~~g~~~~~~~~~~~~f~~~ 903 (1252)
||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|.. +..+ ..+++.+..+.+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 9999999999999999754 899999999864 45567899999853 3333 4455555555677787765
No 376
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-34 Score=294.18 Aligned_cols=185 Identities=25% Similarity=0.426 Sum_probs=161.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-------PQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. .++.+|||+|+--+||++||+-||.|+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 58999999999999999999999998 999999998764321 25789999999999999999999999853
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.. . ....|.+.+.||+.|..+...+. |||||||||
T Consensus 103 ~~----~------------------------------------~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQRV 137 (352)
T COG4148 103 KS----M------------------------------------RAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQRV 137 (352)
T ss_pred cc----c------------------------------------hHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhHH
Confidence 11 0 01136788999999999888776 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|+|||++.|++|+||||.+.||-.-..+++-.|++++++.+.. |+-+.|-..|+.+++|+|++|++|++...|+.+++
T Consensus 138 AIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IP-IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP-ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCC-EEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 99999999999999999999999999999999999998876544 45567788899999999999999999999998776
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 217 ~ 217 (352)
T COG4148 217 W 217 (352)
T ss_pred h
Confidence 3
No 377
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.3e-33 Score=346.66 Aligned_cols=200 Identities=28% Similarity=0.454 Sum_probs=167.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. +++++|+|+|++++|||+++|+||||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeh
Confidence 5899999998742 12468999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-------KYSLVGLPG 800 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~ 800 (1252)
.. ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.++++++..++.+. .|+.+|..
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~- 455 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEG- 455 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCC----HHHHHHHHHHcCcHHHHHhCcccccchhccc-
Confidence 43 457888999999998765 69999998752 1222 2346677777776543 46666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeee
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
..+||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||++ +....+|++++|
T Consensus 456 g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 46899999999999999999999999999999999999999999999985 489999999986 456789999875
No 378
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=325.53 Aligned_cols=191 Identities=22% Similarity=0.381 Sum_probs=160.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+||+.|+.+.++..
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 106 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 106 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999987 9999999998764332 456999999999999999999999876432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
..+ .+.+++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 107 ----~~~-----------------------------~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAraL 148 (369)
T PRK11000 107 ----KEE-----------------------------INQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTL 148 (369)
T ss_pred ----HHH-----------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 000 012357789999999888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++. |...++..+||+|++|++|+++..|+++++.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vT-Hd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT-HDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999998765566666654 5566889999999999999999999987763
No 379
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.3e-33 Score=299.24 Aligned_cols=177 Identities=24% Similarity=0.389 Sum_probs=140.9
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEES 757 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 757 (1252)
.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++|++|++.++ ..|++||
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----------~i~~~~q~~~l~-~~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----------SIAYVSQEPWIQ-NGTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----------EEEEEecCchhc-cCcHHHH
Confidence 59999999999999999999999999999999999877 4689999998 479999999876 5799999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000853 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY-------SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 830 (1252)
Q Consensus 758 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEP 830 (1252)
+.+... ... +...+.++.+++.+..+ +... ....+||+|||||++|||+|+.+|++++||||
T Consensus 86 l~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 86 ILFGKP------FDE----ERYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hccCCC------cCH----HHHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 987421 111 11233344444332211 1122 22568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 831 TSGLDARAAAIVMR-AVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 831 TsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
|+|||+.+++.+.+ +++++.++|+|||++||+++ .+. .+|++++|.+ |
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~-~~d~i~~l~~-G 203 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLP-HADQIVVLDN-G 203 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHh-hCCEEEEEeC-C
Confidence 99999999999988 56766666899999999975 344 4999999975 5
No 380
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.9e-32 Score=306.08 Aligned_cols=198 Identities=21% Similarity=0.344 Sum_probs=155.8
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++. .+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 38 ~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g-- 98 (282)
T cd03291 38 NNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG-- 98 (282)
T ss_pred CeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC--
Confidence 45889998863 1358999999999999999999999999999999999887 4589999998
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCC
Q 000853 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIK-------YSLVGLPGVS 802 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~g~~~~~ 802 (1252)
.++|++|++.+++ .|++||+.+.... .. ..+.+.++.+++.+.. ++.++. .+.
T Consensus 99 --------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~ 158 (282)
T cd03291 99 --------RISFSSQFSWIMP-GTIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGI 158 (282)
T ss_pred --------EEEEEeCcccccc-cCHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCC
Confidence 3799999987766 4999999864211 11 1123334444443221 112221 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCc
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV-KNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGG 881 (1252)
Q Consensus 803 ~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 881 (1252)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||++||+++ . ...+|++++|. +|
T Consensus 159 ~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~-~~~~d~i~~l~-~G 234 (282)
T cd03291 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILH-EG 234 (282)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-H-HHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999865 5554 4799999999975 3 46799999997 58
Q ss_pred EEEEecCCC
Q 000853 882 RIIYSGPLG 890 (1252)
Q Consensus 882 ~~~~~g~~~ 890 (1252)
++++.|++.
T Consensus 235 ~i~~~g~~~ 243 (282)
T cd03291 235 SSYFYGTFS 243 (282)
T ss_pred EEEEECCHH
Confidence 999999864
No 381
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-33 Score=289.74 Aligned_cols=151 Identities=32% Similarity=0.526 Sum_probs=134.1
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc---ccccceEEEEccCCCCCCCCCH
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITV 754 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~~tv 754 (1252)
.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 68999999999999999999999999999999999877 458999999987542 234567899999986655 588
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000853 755 EESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 834 (1252)
Q Consensus 755 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgL 834 (1252)
.||+ ||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 93 RENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred HHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 8876 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 835 DARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 835 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
|+.++..+.+.|+++.+ ++|||++||+++ ++. .+|++++|.+
T Consensus 128 D~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~~~~l~~ 169 (171)
T cd03228 128 DPETEALILEALRALAK-GKTVIVIAHRLS-TIR-DADRIIVLDD 169 (171)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHH-hCCEEEEEcC
Confidence 99999999999999864 799999999975 344 4999999975
No 382
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-33 Score=287.70 Aligned_cols=189 Identities=24% Similarity=0.299 Sum_probs=156.8
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEecccc--ccCCCCCHHHHHHHHHhcc
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYD--LHIAEMTVRETIDFSARCQ 75 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~~~~ 75 (1252)
.+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+-|..||++.|.=..+..
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 5899999999999999999999997 999999998765532 346788999987 4788899999997544321
Q ss_pred CCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCccc-ccccccCCcccccCccccchhH
Q 000853 76 GTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDIC-ADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
+.. + ...++.++++.+||++. .+...-+ ||||||||++
T Consensus 113 ~~~----------------------~--------------~~~~i~~~L~~VgL~~~~l~R~P~e-----LSGGQ~QRia 151 (252)
T COG1124 113 GLS----------------------K--------------SQQRIAELLDQVGLPPSFLDRRPHE-----LSGGQRQRIA 151 (252)
T ss_pred Ccc----------------------H--------------HHHHHHHHHHHcCCCHHHHhcCchh-----cChhHHHHHH
Confidence 110 0 01125778999999875 4555544 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||||+.+|++|+||||||+||+..+.+|++.|.++.+..+-|. +.+.|...-+..+||||+||++|++++.++.+++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~-l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTY-LFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceE-EEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999999988765554 55678888999999999999999999999988875
Q ss_pred H
Q 000853 235 K 235 (1252)
Q Consensus 235 ~ 235 (1252)
.
T Consensus 231 ~ 231 (252)
T COG1124 231 S 231 (252)
T ss_pred c
Confidence 3
No 383
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-32 Score=299.69 Aligned_cols=187 Identities=27% Similarity=0.357 Sum_probs=148.2
Q ss_pred cccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCc-------ccccceEEEEccCCCCC
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ-------HTFARISGYCEQNDIHS 749 (1252)
Q Consensus 677 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 749 (1252)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 469999999999999999999999999999999999876 458999999986532 12346789999998776
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000853 750 PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKY-------SLVGLPGVSGLSTEQRKRLTIAVELVANP 822 (1252)
Q Consensus 750 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~g~~~~~~lSgGqrqrv~ia~al~~~p 822 (1252)
..|++||+.+... ... +...++++.+++.+..+ +..+ ..+..||||||||++|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCC
Confidence 6799999976421 111 12345556666543321 1111 235789999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 823 SIIFMDEPTSGLDARAAAIVMR--AVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 823 ~illlDEPTsgLD~~~~~~i~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
++|||||||+|||+.++..+++ .++.+.++|.|+|++||+++ .+ ..+|++++|.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 216 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD 216 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence 9999999999999999999998 66666666899999999975 34 57999988864
No 384
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.8e-33 Score=319.01 Aligned_cols=191 Identities=26% Similarity=0.356 Sum_probs=160.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+||+.|.....+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999999875432 3467999999999999999999999765433110
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+.+++++++.+||++..++.+++ |||||||||+||+|
T Consensus 146 -----~~~-----------------------------~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~a 186 (340)
T PRK13536 146 -----TRE-----------------------------IEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARA 186 (340)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHHH
Confidence 000 011245678889999989999876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++|||||||+|||+.++.++++.|+++.. .+.|++++ +|...++.++||+|++|++|++++.|+.+++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilis-SH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999875 46666665 566779999999999999999999999888754
No 385
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.1e-33 Score=350.02 Aligned_cols=192 Identities=28% Similarity=0.392 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|+||||||||||+++|+|++ |+ +|+|.+||.++.+... ++.++||+|++.+|. .|++|||.++..
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~---- 448 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNP---- 448 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCC----
Confidence 37999999999999999999999 76 8999999998876543 568999999777665 699999998521
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
+.+.+++.+++..++.++. + -.||++.||.||+. +..||||||||++|||
T Consensus 449 ---------------------~~~~eei~~al~~a~l~~~------i--~~lp~G~dT~vge~-G~~LSGGQrQRialAR 498 (588)
T PRK11174 449 ---------------------DASDEQLQQALENAWVSEF------L--PLLPQGLDTPIGDQ-AAGLSVGQAQRLALAR 498 (588)
T ss_pred ---------------------CCCHHHHHHHHHHhCHHHH------H--HhcccccccccccC-CCCCCHHHHHHHHHHH
Confidence 1112233333333333221 1 23889999999984 5669999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++++|+||+||||||+||+.++..|.+.|+++. .++|+|+..|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999998874 467888777766 5678899999999999999999998854
No 386
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-33 Score=296.52 Aligned_cols=192 Identities=23% Similarity=0.338 Sum_probs=169.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+..|||-||||||||+++|.++++|+ +|+|.++|.++..... ++.++.|+|...++|+.||.||..|+.+
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 47899999999999999999999997 9999999998765442 4678999999999999999999999988
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
+++.... +.+.++.+.|+..||....+..+.+ ||||+||||
T Consensus 133 v~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp~e-----LSGGMqQRV 173 (386)
T COG4175 133 VQGVPKA----------------------------------EREERALEALELVGLEGYADKYPNE-----LSGGMQQRV 173 (386)
T ss_pred ecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCccc-----ccchHHHHH
Confidence 7754310 1123457789999999999999877 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
.|||||..+|+||++|||+|+|||--+.+.++-|.++.+..++|++ .++|..+|.+++.|||.+|++|+++..|+++|+
T Consensus 174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIv-FitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIV-FITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEE-EEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999988877666654 577899999999999999999999999999998
Q ss_pred HH
Q 000853 234 CK 235 (1252)
Q Consensus 234 ~~ 235 (1252)
..
T Consensus 253 l~ 254 (386)
T COG4175 253 LL 254 (386)
T ss_pred Hc
Confidence 64
No 387
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-33 Score=273.39 Aligned_cols=218 Identities=25% Similarity=0.360 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECC-ee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGG-YP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 729 (1252)
.++.+|++++.+ ...+|+|+||++.+||+-+|+|||||||||++++|+|... +.+|+++++| .+
T Consensus 5 iL~~~~vsVsF~-------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSFG-------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEEc-------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 466677766553 3568999999999999999999999999999999999876 4589999999 56
Q ss_pred CCcc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000853 730 KVQH---T-FARISGYCEQNDIHSPNITVEESVIFSAWLRLSP-----EIDLKTKAEFVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 730 ~~~~---~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
+... . .+.-||--+|.|..|.++||+|||..+......- .....+.+++++++|+..||.+.++...
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A---- 145 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA---- 145 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh----
Confidence 5432 1 3445788899999999999999999875322110 0011233467999999999999988764
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
..||.||||++.|++-++.+|++|+||||++|+-.......-++|++++. +++|+++-||+.. +-+.++++.+|.+
T Consensus 146 -~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~- 221 (249)
T COG4674 146 -ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHE- 221 (249)
T ss_pred -hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEec-
Confidence 47999999999999999999999999999999999999999999999986 7999999999763 6678899999985
Q ss_pred cEEEEecCCCC
Q 000853 881 GRIIYSGPLGQ 891 (1252)
Q Consensus 881 G~~~~~g~~~~ 891 (1252)
|.+..+|+.++
T Consensus 222 G~VL~EGsld~ 232 (249)
T COG4674 222 GSVLAEGSLDE 232 (249)
T ss_pred cceeecccHHH
Confidence 89999999754
No 388
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.3e-32 Score=296.90 Aligned_cols=187 Identities=21% Similarity=0.198 Sum_probs=150.5
Q ss_pred cccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE-ECCeeCCcccccceEEEEccCCCCCCCCCHHHH
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-IGGYPKVQHTFARISGYCEQNDIHSPNITVEES 757 (1252)
Q Consensus 679 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 757 (1252)
+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|. ++|... .+.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 6899999999999999999999999999999999876 4589997 777532 12345567789999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000853 758 VIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 837 (1252)
Q Consensus 758 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~ 837 (1252)
+.+....+. ...++. .+.+.+.+++.+..++. ++.||||||||++||++|+.+|++++|||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765432 222222 22344556776665554 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCC
Q 000853 838 AAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQ 891 (1252)
Q Consensus 838 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 891 (1252)
++..+.+.|.+..+ ++|+|++||+++ ++...+|++++|. +|++++.|+.++
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~ 189 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLL-HGKITMCEDLAQ 189 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEE-CCeEEEeCCHHH
Confidence 99999998866443 578999999975 4666899999997 589999999743
No 389
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-33 Score=318.73 Aligned_cols=191 Identities=24% Similarity=0.337 Sum_probs=159.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc------cceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP------QKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+....
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998764321 35699999999999999999999987543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. . .+ .+.+++++++.+||++..++.+++ |||||||||+
T Consensus 110 ~~~~----~-~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~ 150 (343)
T PRK11153 110 AGTP----K-AE-----------------------------IKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVA 150 (343)
T ss_pred cCCC----H-HH-----------------------------HHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHH
Confidence 2110 0 00 012346788999999888887766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||||+.+|+||||||||+|||+.++..+.+.|+++.+..+.|++++. |...++.++||+|++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvt-H~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLIT-HEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998765567766655 5556888899999999999999999887763
No 390
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-33 Score=299.84 Aligned_cols=185 Identities=27% Similarity=0.400 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-- 102 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-- 102 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC--
Confidence 47899999999999999999999887 999999998875432 245689999998888899999999886432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. .+ .+.+++++++.+||.+..++.+++ |||||||||+|||||
T Consensus 103 --~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al 145 (213)
T cd03259 103 --PK-AE-----------------------------IRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARAL 145 (213)
T ss_pred --CH-HH-----------------------------HHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHH
Confidence 00 00 011246788899998877887766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+.+|++++|||||+|||+.++.++.+.|+++++..+.+++++ +|...++.+.||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV-THDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999876446676665 45556788899999999999998765
No 391
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-32 Score=269.01 Aligned_cols=191 Identities=23% Similarity=0.417 Sum_probs=164.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
.++++||||||||||||+++|+.+|. .|+|.+||.+++. +....|.|.|++.++|.+||.||+.|+.++++..+.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~ 107 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA 107 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHHHHHHHHHHhcCCCHH
Confidence 36899999999999999999999997 9999999998864 344569999999999999999999999988764311
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. ....+.+.+...||.+..+..|=+ |||||||||.|||||.
T Consensus 108 -------~---------------------------R~~~a~q~l~~VgL~~~~~~~i~q-----LSGGmrQRvGiARALa 148 (259)
T COG4525 108 -------Q---------------------------RREIAHQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALA 148 (259)
T ss_pred -------H---------------------------HHHHHHHHHHHhCcccccccceEe-----ecchHHHHHHHHHHhh
Confidence 0 112356788889999888887765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEc--CCcEEEeCCcchHHHH
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMA--EGKIVYHGPRSYICKF 236 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~~~~~~~ 236 (1252)
.+|+.|+||||+++||+-+++++++.|-++.+..|+.+++ ++|...|.+-++++++||+ .|+++..=+.+....|
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll-iTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL-ITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE-EeccHHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 9999999999999999999999999999988888777655 5678889999999999998 5899988877765554
No 392
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-33 Score=300.89 Aligned_cols=189 Identities=28% Similarity=0.338 Sum_probs=155.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999876431 12356899999988999999999999865432110
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+.+++++++.+||++..++.+++ |||||||||+||+|
T Consensus 105 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~a 145 (220)
T cd03265 105 -----GAE-----------------------------RRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARS 145 (220)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHH
Confidence 000 012346788999998888888876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
++.+|++++|||||+|||+.++..+.+.|+++.+..+.++++ ++|...++...+|++++|++|+++..|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~-~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL-TTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999999999999999999987644666655 4556668888999999999999999987654
No 393
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.1e-32 Score=337.37 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 47889998876421 012469999999999999999999999999999999999887 4589999999986
Q ss_pred Ccc---c----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000853 731 VQH---T----FARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSG 803 (1252)
Q Consensus 731 ~~~---~----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~ 803 (1252)
... + .++.++|++|++.+++.+|+.||+.+...... ...++.++++.++++.++|.+..++. +..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQ-----PSQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhcCC-----ccc
Confidence 432 1 14579999999988889999999988653321 23344556788999999998776655 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEE
Q 000853 804 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRI 883 (1252)
Q Consensus 804 lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 883 (1252)
||||||||++|||+|+++|++|+|||||+|||+.+++.+.+.|+++.++|+|+|++||+++ ..+.+|++++|. +|++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~-~G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIR-DGEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999877999999999864 456799999997 5999
Q ss_pred EEecCCCC
Q 000853 884 IYSGPLGQ 891 (1252)
Q Consensus 884 ~~~g~~~~ 891 (1252)
++.|++.+
T Consensus 222 ~~~g~~~~ 229 (648)
T PRK10535 222 VRNPPAQE 229 (648)
T ss_pred EeecCccc
Confidence 99999864
No 394
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.4e-32 Score=337.71 Aligned_cols=207 Identities=21% Similarity=0.262 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEC
Confidence 5899999998742 2358999999999999999999999999999999999887 4689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000853 731 VQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTE 807 (1252)
Q Consensus 731 ~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgG 807 (1252)
.. ..+++.++|++|++.+++ .|++|| . . ...++.+++.++.+++.+..+..-|.....+||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHH-Hhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 53 356788999999987654 466665 0 1 12234577888998887644321111113589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEe
Q 000853 808 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS 886 (1252)
Q Consensus 808 qrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 886 (1252)
||||++||||++++|++|+||||||+||+.++..+.+.|.+..+ .++|+|++||++ +....+|++++|.+ |++++.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~-G~i~e~ 530 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRN-GQLSEL 530 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999987643 589999999986 45788999999975 788766
Q ss_pred cC
Q 000853 887 GP 888 (1252)
Q Consensus 887 g~ 888 (1252)
..
T Consensus 531 ~~ 532 (547)
T PRK10522 531 TG 532 (547)
T ss_pred cC
Confidence 43
No 395
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=319.48 Aligned_cols=191 Identities=22% Similarity=0.321 Sum_probs=159.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..+++++||+||+.|+..
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998765332 2469999999999999999999998764
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
..+.. . ++ .+.+++++++.+||.+..++.+.+ |||||||||
T Consensus 133 ~~~~~----~-~~-----------------------------~~~~~~e~L~~~gL~~~~~~~~~~-----LSgGq~QRv 173 (400)
T PRK10070 133 LAGIN----A-EE-----------------------------RREKALDALRQVGLENYAHSYPDE-----LSGGMRQRV 173 (400)
T ss_pred hcCCC----H-HH-----------------------------HHHHHHHHHHHcCCChhhhcCccc-----CCHHHHHHH
Confidence 32210 0 00 012346789999998888888766 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|||||+.+|+||||||||+|||+.++..+.+.|+++.+..++|++++. |...++.+++|+|++|++|++++.|+++++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivT-Hd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS-HDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEE-CCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999998765566766654 556688899999999999999999988776
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 253 ~ 253 (400)
T PRK10070 253 L 253 (400)
T ss_pred H
Confidence 3
No 396
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-32 Score=301.77 Aligned_cols=194 Identities=25% Similarity=0.388 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++........
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 47899999999999999999999886 9999999988754322 3568999999888889999999988653221000
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
+.. .. +.+..++++++.+||.+..++.+++ |||||||||+||+||
T Consensus 107 ~~~-~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al 151 (239)
T cd03296 107 RPP-EA-----------------------------EIRAKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARAL 151 (239)
T ss_pred cCC-HH-----------------------------HHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHH
Confidence 000 00 0011246788889998777877766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++...+|++++|++|++++.|+++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD-QEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999876446777666554 5678889999999999999999987654
No 397
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-32 Score=307.12 Aligned_cols=191 Identities=23% Similarity=0.326 Sum_probs=157.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++++||+||+.+...
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999987 9999999988754321 2468999999989989999999988653
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
..+. . . .+ .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 129 ~~~~--~--~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv 169 (269)
T cd03294 129 VQGV--P--R-AE-----------------------------REERAAEALELVGLEGWEHKYPDE-----LSGGMQQRV 169 (269)
T ss_pred hcCC--C--H-HH-----------------------------HHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHH
Confidence 2210 0 0 00 012346788999998888888876 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+||+||+.+|+||||||||+|||+.++..+.+.++++++..+.+++++.| ...++.+.+|++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH-~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH-DLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999987655667666554 55578889999999999999999987765
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
No 398
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-32 Score=288.43 Aligned_cols=191 Identities=27% Similarity=0.375 Sum_probs=157.9
Q ss_pred EEEEEeEEEEEecCccccccccccc-ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQK-KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
.++.+|++..++.... +... ...+++||||+|++||++||+|.||||||||-++|.|+.. +++|+|.++|.+
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcc
Confidence 3677888777654321 1111 2579999999999999999999999999999999999987 569999999987
Q ss_pred CCcccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000853 730 KVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQR 809 (1252)
Q Consensus 730 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqr 809 (1252)
+.... .++..+++.++|+.+||....- ...+++||||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~----~ryPhelSGGQr 115 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFL----YRYPHELSGGQR 115 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHh----hcCCcccCchhh
Confidence 43211 2345677999999999865321 123689999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 810 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 810 qrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
||+.|||||+.+|+++++|||||.||...+.++.++|+++.++ |.|.++++||.+ -+-..+|++.+|.. |++|+.|+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g~ 193 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIGP 193 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEecC
Confidence 9999999999999999999999999999999999999999865 999999999975 35667899999975 99999999
Q ss_pred CCC
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
.++
T Consensus 194 ~~~ 196 (268)
T COG4608 194 TEE 196 (268)
T ss_pred HHH
Confidence 743
No 399
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-32 Score=268.81 Aligned_cols=184 Identities=23% Similarity=0.378 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
++-|+||||||||||||+|.+...|+ .|+|.+||++++... .++.+|+|.|+.-+++..||.||+.|..+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 46799999999999999999999997 999999999986543 267899999999999999999999998876
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+...+ +.+.++.++|+..||.+..+...-+ |||||||||+
T Consensus 107 ~G~~~~----------------------------------~i~~rV~~~L~~VgL~~k~~~lP~~-----LSGGEQQRva 147 (223)
T COG2884 107 IGKPPR----------------------------------EIRRRVSEVLDLVGLKHKARALPSQ-----LSGGEQQRVA 147 (223)
T ss_pred cCCCHH----------------------------------HHHHHHHHHHHHhccchhhhcCccc-----cCchHHHHHH
Confidence 543210 1123467899999999988877655 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
||||++.+|++|+-||||-.|||..+.+|++.+.++.+ .|+|+++.. |...-+-..-.|++.|++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~AT-Hd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMAT-HDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEe-ccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999999975 577777664 4454555567799999999998664
No 400
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.2e-32 Score=301.91 Aligned_cols=199 Identities=24% Similarity=0.373 Sum_probs=157.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... +..++|++|++.+++.+||+||+.+......
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999886 9999999988764332 3458999999999999999999988754221
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. . ..+. . ...+. .+...+++++++.+||++..++.+++ |||||||||+||
T Consensus 105 ~~-~------~~~~---~---~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la 155 (236)
T cd03219 105 GS-G------LLLA---R---ARREE-----------REARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIA 155 (236)
T ss_pred cc-c------cccc---c---ccccH-----------HHHHHHHHHHHHHcCccchhhCChhh-----CCHHHHHHHHHH
Confidence 00 0 0000 0 00000 00112357788999998877887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||+.+|++++|||||+|||+.++.++.+.|+++++ .+.+++++. |...++...||++++|++|++++.|+++++
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vs-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVE-HDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999999999999999999875 566766654 555688889999999999999999987665
No 401
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.1e-32 Score=311.91 Aligned_cols=191 Identities=26% Similarity=0.350 Sum_probs=157.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~- 107 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM- 107 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC-
Confidence 47999999999999999999999987 999999998764321 245799999998889999999999875432210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. . .+ .+.+++++++.+||++..++.+++ |||||||||+||+|
T Consensus 108 -~--~-~~-----------------------------~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 149 (303)
T TIGR01288 108 -S--T-RE-----------------------------IEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARA 149 (303)
T ss_pred -C--H-HH-----------------------------HHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHH
Confidence 0 0 00 011245678889999888888876 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+.+|++|||||||+|||+.++.++.+.|+++++ .+.|++++ +|...++.+.||+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999865 46666665 455668889999999999999999999887643
No 402
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-32 Score=297.44 Aligned_cols=185 Identities=26% Similarity=0.375 Sum_probs=152.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++||+|++.+++.+||+||+.+....++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 104 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP-- 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCC--
Confidence 47899999999999999999999886 9999999988753 2457899999988888899999998865432100
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. .+ .+..++++++.+||.+..++.+++ ||||||||++||+||+
T Consensus 105 --~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~ 147 (220)
T cd03293 105 --K-AE-----------------------------ARERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARALA 147 (220)
T ss_pred --H-HH-----------------------------HHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHH
Confidence 0 00 012346788899998877877765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEc--CCcEEEeCCc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMA--EGKIVYHGPR 230 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~ 230 (1252)
.+|+++||||||+|||+.++..+.+.|+++.+..+.+++++.| ...++.+.||++++|+ +|++++.++.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH-~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH-DIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec-CHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999886555667666554 4557888999999999 7999988764
No 403
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.3e-32 Score=316.53 Aligned_cols=185 Identities=26% Similarity=0.421 Sum_probs=157.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++++||+||+.|+.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 47999999999999999999999987 99999999886431 124579999999999999999999988531
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.. .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 103 ~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qRv 137 (352)
T PRK11144 103 KS----------------------------------------MVAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQRV 137 (352)
T ss_pred hh----------------------------------------hHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHH
Confidence 00 011246788999998888888766 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|++++ +|...++..++|++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~v-THd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYV-SHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999876556666655 4556789999999999999999999998877
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 217 ~ 217 (352)
T PRK11144 217 W 217 (352)
T ss_pred H
Confidence 4
No 404
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.98 E-value=3.2e-32 Score=295.58 Aligned_cols=185 Identities=26% Similarity=0.407 Sum_probs=152.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++..||+||+.+.......
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-- 102 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV-- 102 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC--
Confidence 37899999999999999999999886 9999999988754322 35699999998888889999999886532210
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. ..+ .+.+++++++.+||.+..++.+++ ||||||||++|||||
T Consensus 103 ~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral 145 (213)
T cd03301 103 P---KDE-----------------------------IDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAI 145 (213)
T ss_pred C---HHH-----------------------------HHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHH
Confidence 0 000 012346788899998888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+.+|++++|||||+|||+.++.++.+.|+++++..+.|++++.|+ ..++...+|+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~-~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD-QVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999876556777766554 56788899999999999998876
No 405
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.98 E-value=6e-32 Score=334.13 Aligned_cols=211 Identities=19% Similarity=0.261 Sum_probs=169.9
Q ss_pred cEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCee
Q 000853 650 LTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYP 729 (1252)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 729 (1252)
..++++|+++.++... ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 3689999999885321 012358999999999999999999999999999999999887 568999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccccccc-ccCCCCCCCC
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSL-VGLPGVSGLS 805 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~g~~~~~~lS 805 (1252)
+.. ..+++.++|++|++.++. .|+++|. . + +..+++++++++.+++.+..+.. -|.+...+||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~------~--~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDE------G--E----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhccc------c--c----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 654 356778999999987654 5777773 1 1 12345578899999988765432 2323346899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEE
Q 000853 806 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVK-NVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRII 884 (1252)
Q Consensus 806 gGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 884 (1252)
||||||++||||++++|++|+||||||+||+.+++.+.+.+. ++..+++|+|++||+++ ..+.+|++++|.+ |+++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999998664 45556899999999864 5678999999975 8887
Q ss_pred Ee
Q 000853 885 YS 886 (1252)
Q Consensus 885 ~~ 886 (1252)
+.
T Consensus 550 ~~ 551 (555)
T TIGR01194 550 KD 551 (555)
T ss_pred Ee
Confidence 64
No 406
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=2.8e-32 Score=300.29 Aligned_cols=190 Identities=24% Similarity=0.349 Sum_probs=156.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999986 999999999875432 145689999999999999999999886532
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
+.. .. .. ....++++++.+||++..++.+.+ |||||||||+
T Consensus 110 ~~~----~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 150 (233)
T cd03258 110 AGV----PK-AE-----------------------------IEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVG 150 (233)
T ss_pred cCC----CH-HH-----------------------------HHHHHHHHHHHCCChhhhhcChhh-----CCHHHHHHHH
Confidence 210 00 00 011246788899998877777755 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+||+.+|++++|||||+|||+.++..+.+.++++++..+.+++++.|+ ..++.+.+|++++|++|++++.|+.+++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE-MEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999876546677666554 5678889999999999999999986654
No 407
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=3.4e-32 Score=307.32 Aligned_cols=191 Identities=26% Similarity=0.403 Sum_probs=154.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-----VPQKTSAYISQYDL-HIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-----~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++. .+...||+||+.|+...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 47999999999999999999999987 99999999987642 12467899999853 44467999999986532
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc--ccccccccCCcccccCccccch
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD--ICADTIVGDPMRRGVSGGQKKR 152 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~rgLSGGqkqR 152 (1252)
.+.. .++ .+.+++++++.+||. +..++.+.+ ||||||||
T Consensus 112 ~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~~-----LSgGq~qr 152 (287)
T PRK13637 112 LGLS-----EEE-----------------------------IENRVKRAMNIVGLDYEDYKDKSPFE-----LSGGQKRR 152 (287)
T ss_pred CCCC-----HHH-----------------------------HHHHHHHHHHHcCCCchhhccCCccc-----CCHHHHHH
Confidence 2100 000 012356788999997 556777655 99999999
Q ss_pred hHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 153 LTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 153 vsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
++||+||+.+|++|||||||+|||+.++.++.+.|+++++..+.|++++. |...++...||+|++|++|++++.|+.++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt-Hd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS-HSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998765466666654 55667888999999999999999999887
Q ss_pred HH
Q 000853 233 IC 234 (1252)
Q Consensus 233 ~~ 234 (1252)
+.
T Consensus 232 ~~ 233 (287)
T PRK13637 232 VF 233 (287)
T ss_pred HH
Confidence 64
No 408
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=3.8e-32 Score=301.14 Aligned_cols=198 Identities=24% Similarity=0.386 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 47999999999999999999999886 999999998876432 235689999998889999999999875321
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.. . ..... .+..+ ...+.+++++++.+||.+..++.+++ |||||||||+
T Consensus 106 ~~-~----~~~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 154 (241)
T cd03256 106 RR-S----TWRSL------FGLFP---------------KEEKQRALAALERVGLLDKAYQRADQ-----LSGGQQQRVA 154 (241)
T ss_pred cc-h----hhhhh------cccCc---------------HHHHHHHHHHHHHcCChhhhCCCccc-----CCHHHHHHHH
Confidence 00 0 00000 00000 00112346788899998777777655 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+||+.+|+||+|||||+|||+.++..+.+.|+++++..+.+++++. |...++...+|++++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL-HQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999999999999998765566766655 555678889999999999999999987765
No 409
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.98 E-value=3.9e-32 Score=299.03 Aligned_cols=189 Identities=23% Similarity=0.352 Sum_probs=155.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+......
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 47899999999999999999999987 999999998865432 12458999999999999999999987643221
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. . ..+ .+.+++++++.+|+.+..++.+++ |||||||||+||
T Consensus 105 ~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la 145 (232)
T cd03218 105 L--S---KKE-----------------------------REEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIA 145 (232)
T ss_pred C--C---HHH-----------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHH
Confidence 0 0 000 011346788899998878887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.+++++. |...++.+.+|++++|++|++++.|+.+++
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITD-HNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999998875 466666654 455588999999999999999999987654
No 410
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.98 E-value=2.3e-32 Score=297.27 Aligned_cols=180 Identities=22% Similarity=0.376 Sum_probs=147.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 47999999999999999999999886 999999998875422 235689999999899999999999987543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. ..+ .+.+++++++.+||++..++.+++ |||||||||+
T Consensus 108 ~~~~-----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ 148 (216)
T TIGR00960 108 IGVP-----PRD-----------------------------ANERVSAALEKVGLEGKAHALPMQ-----LSGGEQQRVA 148 (216)
T ss_pred cCCC-----HHH-----------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 2100 000 012346788999998877887765 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
|||||+.+|++|||||||+|||+.++.++.+.|+++.+ .+.+++++ +|...++...||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~v-sH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVA-THDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998865 46666655 4555678889999999999974
No 411
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.8e-33 Score=301.89 Aligned_cols=215 Identities=27% Similarity=0.416 Sum_probs=177.4
Q ss_pred CcEEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCe
Q 000853 649 PLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGY 728 (1252)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 728 (1252)
...+.|.++++.++ +.+++|+++||++++|+++|++|+||+||||++++|...+. +.+|.|.+||+
T Consensus 260 ~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~q 325 (497)
T COG5265 260 LGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQ 325 (497)
T ss_pred cceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcch
Confidence 44689999998875 34689999999999999999999999999999999999887 45899999999
Q ss_pred eCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHcCCcccccccccCCC
Q 000853 729 PKV---QHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAE-----FVNEVLQTIELDGIKYSLVGLPG 800 (1252)
Q Consensus 729 ~~~---~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~g~~~ 800 (1252)
++. ....|+.+|.||||..++ +-|...|+.|+. ++.+.+++.+ .+...++ .+.+-.++.+|..+
T Consensus 326 dir~vtq~slR~aIg~VPQDtvLF-NDti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerg 397 (497)
T COG5265 326 DIRDVTQQSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERG 397 (497)
T ss_pred hHHHhHHHHHHHHhCcCcccceeh-hhhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhe
Confidence 854 356788999999998775 569999998763 2333333222 1222222 34556778888765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecC
Q 000853 801 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNG 880 (1252)
Q Consensus 801 ~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 880 (1252)
. .|||||||||+|||+++.+|+||++||+||.||..++++|+..|++.+ .|+|.+++.|+.+ ....+|.+++|. +
T Consensus 398 l-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~-~ 472 (497)
T COG5265 398 L-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLD-N 472 (497)
T ss_pred e-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEee-C
Confidence 4 599999999999999999999999999999999999999999999987 4899999999976 456789999997 4
Q ss_pred cEEEEecCCC
Q 000853 881 GRIIYSGPLG 890 (1252)
Q Consensus 881 G~~~~~g~~~ 890 (1252)
|+|++.|+.+
T Consensus 473 g~i~erg~h~ 482 (497)
T COG5265 473 GRIVERGTHE 482 (497)
T ss_pred CEEEecCcHH
Confidence 9999999863
No 412
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.98 E-value=3.8e-32 Score=309.17 Aligned_cols=190 Identities=23% Similarity=0.370 Sum_probs=159.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++++||+||+.|.+...+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 999999998875421 2457999999999999999999999876543210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. ++ .+.+++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 107 ~-----~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~a 147 (301)
T TIGR03522 107 G-----QL-----------------------------LKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQA 147 (301)
T ss_pred H-----HH-----------------------------HHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHH
Confidence 0 00 011246788999999988888866 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|++|+|||||+|||+.++.++++.++++.. +.|+++ ++|...++.++||+|++|++|++++.|+.+++.+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii-~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIIL-STHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEE-EcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999853 555555 5566778999999999999999999999888754
No 413
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.98 E-value=2.5e-32 Score=364.28 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=171.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEE-CCee
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRI-GGYP 729 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~-~g~~ 729 (1252)
.++++||++.|+.. +++.+|+|+||+|++||++||+||||||||||+++|+|.+. +.+|+|.+ ||.+
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcc
Confidence 58999999987531 12469999999999999999999999999999999999887 56899999 4676
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHc-cC--------CC---------C-------------------
Q 000853 730 KVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWL-RL--------SP---------E------------------- 769 (1252)
Q Consensus 730 ~~~---~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l-~~--------~~---------~------------------- 769 (1252)
+.. ..+|+.+|||+|++.+++ .|++||+.++... +. .. .
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 532 346788999999998876 5999999986310 00 00 0
Q ss_pred -----------CCHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000853 770 -----------IDLKTKAEFVNEVLQTIELDGI-------KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 831 (1252)
Q Consensus 770 -----------~~~~~~~~~~~~~l~~~~l~~~-------~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPT 831 (1252)
......++.+.++++.+++.+. .|+.+|.. +..||||||||++|||||+++|+||||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0001123557778887776543 35666654 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 832 SGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 832 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
|+||+.++..+++.|+++.+ +|+|+|+++|+++ ..+.+|++++|.+
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSN 654 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeC
Confidence 99999999999999999975 5899999999975 4578999999986
No 414
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.98 E-value=4.3e-32 Score=312.77 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCc----cCCCccc-------cceEEEeccccccCCCCCHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGY----RLDEFVP-------QKTSAYISQYDLHIAEMTVRETID 69 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~----~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~ 69 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|. ++..... ++.++||+|++.+++..||+||+.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 47999999999999999999999987 999999996 3322211 246999999999999999999999
Q ss_pred HHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccc
Q 000853 70 FSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQ 149 (1252)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 149 (1252)
|+....+... . +.+.+++++++.+||.+..++.+++ |||||
T Consensus 129 ~~~~~~g~~~-----~-----------------------------~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq 169 (382)
T TIGR03415 129 FGLEMQGMPE-----A-----------------------------ERRKRVDEQLELVGLAQWADKKPGE-----LSGGM 169 (382)
T ss_pred HHHHhcCCCH-----H-----------------------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHH
Confidence 8764321100 0 0012357789999999888888876 99999
Q ss_pred cchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCC
Q 000853 150 KKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 150 kqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1252)
||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.+..+.|++++ +|...++.+++|+|++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~i-THdl~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFV-SHDLDEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999876556666665 556678899999999999999999999
Q ss_pred cchHH
Q 000853 230 RSYIC 234 (1252)
Q Consensus 230 ~~~~~ 234 (1252)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 87764
No 415
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=4.6e-32 Score=300.04 Aligned_cols=190 Identities=27% Similarity=0.362 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.......
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 47899999999999999999999886 999999998875432 245689999999899899999999886533210
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcc--cccccccCCcccccCccccchhHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDI--CADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
.. ++ .+..++++++.+||++ ..++.+.+ |||||||||+|
T Consensus 106 ----~~-~~-----------------------------~~~~~~~~l~~l~l~~~~~~~~~~~~-----LS~G~~qrv~l 146 (242)
T cd03295 106 ----PK-EK-----------------------------IRERADELLALVGLDPAEFADRYPHE-----LSGGQQQRVGV 146 (242)
T ss_pred ----CH-HH-----------------------------HHHHHHHHHHHcCCCcHHHHhcChhh-----CCHHHHHHHHH
Confidence 00 00 0122467888899985 55666655 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||||+.+|++++|||||+|||+.++..+.+.|+++++..+.+++++.|+ ..++...+|+|++|++|++++.|+++++
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD-IDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999876446676665554 5578889999999999999999987654
No 416
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.98 E-value=3.9e-32 Score=311.47 Aligned_cols=188 Identities=27% Similarity=0.354 Sum_probs=157.2
Q ss_pred EeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-cceEEEeccccccCCCCCHHHHHHHHHhccCCCCCCc
Q 000853 4 LLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHRAD 82 (1252)
Q Consensus 4 i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 82 (1252)
|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+||+||+.|+.+.+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999987 9999999998754332 456999999999999999999999975432100
Q ss_pred hhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHhcC
Q 000853 83 SMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIVGP 162 (1252)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~~~ 162 (1252)
..+ .+.+++++++.+||.+..++.+.+ |||||||||+|||||+.+
T Consensus 74 -~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 -RAE-----------------------------IKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQRVALARALVFK 118 (325)
T ss_pred -HHH-----------------------------HHHHHHHHHHHcCCcchhcCChhh-----CCHHHHHHHHHHHHHHhC
Confidence 000 012346788999998888887765 999999999999999999
Q ss_pred CcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 163 TRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 163 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|++|||||||+|||+.++..+.+.|+++.+..+.|+|++. |...++..+||+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT-Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT-HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999998765567776654 5566889999999999999999999887763
No 417
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=3.6e-32 Score=294.30 Aligned_cols=183 Identities=25% Similarity=0.365 Sum_probs=150.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+||+.+....++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK-- 101 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC--
Confidence 47899999999999999999999886 9999999987754 23457899999998899999999998865432110
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. .+ .+..++++++.+|+++..++.+++ |||||||||+||+||+
T Consensus 102 --~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~ 144 (210)
T cd03269 102 --K-EE-----------------------------ARRRIDEWLERLELSEYANKRVEE-----LSKGNQQKVQFIAAVI 144 (210)
T ss_pred --h-HH-----------------------------HHHHHHHHHHHcCChHHHhCcHhh-----CCHHHHHHHHHHHHHh
Confidence 0 00 012346788899998877877765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
.+|++++|||||+|||+.++.++.+.++++.+ .+.+++++ +|...++.+.+|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILS-THQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-CCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998865 45666555 45566788899999999999998764
No 418
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.98 E-value=3.2e-32 Score=296.71 Aligned_cols=180 Identities=23% Similarity=0.396 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-------ccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-------PQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 47999999999999999999999887 999999998875432 13468999999889999999999998754
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.++.. . .+ .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 109 ~~~~~----~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv 149 (218)
T cd03255 109 LAGVP----K-KE-----------------------------RRERAEELLERVGLGDRLNHYPSE-----LSGGQQQRV 149 (218)
T ss_pred hcCCC----H-HH-----------------------------HHHHHHHHHHHcCCchhhhcChhh-----cCHHHHHHH
Confidence 32100 0 00 012346788899998877877765 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++..+.+++++.|++ .++. .||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999998764467777766655 4555 8999999999974
No 419
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.98 E-value=5.2e-32 Score=314.22 Aligned_cols=189 Identities=24% Similarity=0.456 Sum_probs=157.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.|+..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 47999999999999999999999987 99999999887432 124569999999999999999999998653
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
... ..+ .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 102 ~~~-------~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRv 140 (354)
T TIGR02142 102 RAR-------PSE-----------------------------RRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRV 140 (354)
T ss_pred ccC-------hhH-----------------------------HHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHH
Confidence 110 000 012346788999999888888766 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|++++. |...++..++|+|++|++|+++..|+++++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivt-H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS-HSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998765566666654 556688899999999999999999987765
Q ss_pred H
Q 000853 234 C 234 (1252)
Q Consensus 234 ~ 234 (1252)
.
T Consensus 220 ~ 220 (354)
T TIGR02142 220 W 220 (354)
T ss_pred h
Confidence 3
No 420
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=5.1e-32 Score=293.40 Aligned_cols=183 Identities=28% Similarity=0.431 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc--ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV--PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+........
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999987 999999998765422 2456899999998999999999998865432100
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+..++++++.+||++..++.+++ |||||||||+||||
T Consensus 104 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 144 (211)
T cd03264 104 -----SKE-----------------------------VKARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQA 144 (211)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHCCCHHHHhCchhh-----CCHHHHHHHHHHHH
Confidence 000 011246788889998877887766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
|+.+|++++|||||+|||+.++.++.+.|++++. +.|+++ ++|...++.+.+|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~-vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVIL-STHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEE-EcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 455544 556666788899999999999998765
No 421
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.98 E-value=5.3e-32 Score=292.57 Aligned_cols=180 Identities=26% Similarity=0.385 Sum_probs=149.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-cccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++||+|++.++++.||+||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-- 102 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-- 102 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--
Confidence 47899999999999999999999886 99999999876432 1245689999998889999999999886532100
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.+.+++++++.+||.+..++.+++ |||||||||+||+|+
T Consensus 103 ------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al 141 (208)
T cd03268 103 ------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALAL 141 (208)
T ss_pred ------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHH
Confidence 011246678888998877877766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+.+|++++|||||+|||+.++..+.+.|+++.+ .+.+++++ +|...++...+|++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLIS-SHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998875 56666665 45566788899999999999998765
No 422
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.98 E-value=1e-31 Score=294.01 Aligned_cols=188 Identities=32% Similarity=0.565 Sum_probs=153.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC---CCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLS---HSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~---~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.+||+||+.|+......
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 478999999999999999999998 65 999999998875434456799999999999999999999987543211
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHH-HHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDY-ILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
... .... ....+++ .++.+++.+..++.+++ |||||||||+||
T Consensus 112 ~~~---~~~~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la 155 (226)
T cd03234 112 RKS---SDAI----------------------------RKKRVEDVLLRDLALTRIGGNLVKG-----ISGGERRRVSIA 155 (226)
T ss_pred ccc---chHH----------------------------HHHHHHHHHHHhhcchhhhcccccC-----cCHHHHHHHHHH
Confidence 100 0000 0011233 77788888777777655 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
|+|+.+|+++||||||+|||+.++..+.+.++++.+ .+.|++++.|++..++.+.||++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998865 46788888777767899999999999999998775
No 423
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.98 E-value=4.5e-32 Score=300.80 Aligned_cols=198 Identities=23% Similarity=0.324 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 47999999999999999999999886 999999998875422 245689999998889999999999875311
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
... ..... .+..+ .+.+.+++++++.+||.+..++.+.+ |||||||||+
T Consensus 107 ~~~-----~~~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ 155 (243)
T TIGR02315 107 YKP-----TWRSL------LGRFS---------------EEDKERALSALERVGLADKAYQRADQ-----LSGGQQQRVA 155 (243)
T ss_pred ccc-----chhhh------hcccc---------------HHHHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHH
Confidence 000 00000 00000 00112356788899998777777655 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.+++++. |...++.+.||++++|++|++++.|+++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~t-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL-HQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999998764466666654 555677889999999999999999987654
No 424
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.5e-31 Score=329.32 Aligned_cols=206 Identities=22% Similarity=0.352 Sum_probs=166.5
Q ss_pred EEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCC
Q 000853 652 LTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKV 731 (1252)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 731 (1252)
++++|+++.++ ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC---
Confidence 56788887652 2469999999999999999999999999999999999877 45899999873
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHH-c----------cCCCCC--C----------------HHHHHHHHHHH
Q 000853 732 QHTFARISGYCEQNDIHSPNITVEESVIFSAW-L----------RLSPEI--D----------------LKTKAEFVNEV 782 (1252)
Q Consensus 732 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l----------~~~~~~--~----------------~~~~~~~~~~~ 782 (1252)
+.+||++|++.+++.+||+|++.++.. . ...... . ..+.++++.++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 258999999988889999999987421 0 000000 0 01223567889
Q ss_pred HHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEec
Q 000853 783 LQTIELDGIKY-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIH 861 (1252)
Q Consensus 783 l~~~~l~~~~~-~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 861 (1252)
++.+|+.+..+ .. +.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 99999975332 22 468999999999999999999999999999999999999999999874 4899999999
Q ss_pred CCCHHHHHHhcceeeeecCcEE-EEecCCC
Q 000853 862 QPSIDIFEAFDDLILMKNGGRI-IYSGPLG 890 (1252)
Q Consensus 862 ~~~~~~~~~~d~~~~l~~~G~~-~~~g~~~ 890 (1252)
+++ .+.+.||++++|.+ |++ ++.|+++
T Consensus 211 d~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 238 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDY-GELRVYPGNYD 238 (530)
T ss_pred CHH-HHHhhcceEEEEeC-CEEEEecCCHH
Confidence 975 46678999999975 788 5888764
No 425
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.98 E-value=4.8e-32 Score=292.07 Aligned_cols=177 Identities=27% Similarity=0.357 Sum_probs=145.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccc-cCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDL-HIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+...||+||+.+......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--- 101 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD--- 101 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC---
Confidence 47999999999999999999999987 9999999988754333457999999864 3456799999987542110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. .+.+++++++.+||.+..++.+++ ||||||||++|||||
T Consensus 102 --~---------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral 141 (205)
T cd03226 102 --A---------------------------------GNEQAETVLKDLDLYALKERHPLS-----LSGGQKQRLAIAAAL 141 (205)
T ss_pred --c---------------------------------cHHHHHHHHHHcCCchhcCCCchh-----CCHHHHHHHHHHHHH
Confidence 0 001246788899998888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEE
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~ 225 (1252)
+.+|++++|||||+|||+.++..+.+.|+++++ .+.+++++. |...++.+.+|++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVIT-HDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999865 466766655 4555778899999999999874
No 426
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=288.49 Aligned_cols=226 Identities=20% Similarity=0.269 Sum_probs=184.5
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC---eEEEEEEECC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG---IIEGDIRIGG 727 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 727 (1252)
-++.+|+++..... .+...++++|||+|++||.+||+|.||||||-..+.+.++++.. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 36777777665432 24567999999999999999999999999999999999976532 2479999999
Q ss_pred eeCCc---ccc----cceEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 000853 728 YPKVQ---HTF----ARISGYCEQNDI--HSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGL 798 (1252)
Q Consensus 728 ~~~~~---~~~----~~~~~~v~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 798 (1252)
.+... ... -..|++++|+|. +.|-.|+.+.+.-..+++ ...+.+..++++.++|+.+|+.+.....-
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~-- 152 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLD-- 152 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhh--
Confidence 98532 222 236899999984 567778887776654443 45567778889999999999987765542
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeee
Q 000853 799 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILM 877 (1252)
Q Consensus 799 ~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 877 (1252)
..+++|||||||||.||+||+.+|++||.||||+.||...+.+|.++|+++.++ |..++++|||.+ -+-..+|+++||
T Consensus 153 ~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 153 AYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred hCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 346899999999999999999999999999999999999999999999999755 999999999975 355667999999
Q ss_pred ecCcEEEEecCCCC
Q 000853 878 KNGGRIIYSGPLGQ 891 (1252)
Q Consensus 878 ~~~G~~~~~g~~~~ 891 (1252)
.+ |++++.|+.++
T Consensus 232 ~~-G~ivE~~~t~~ 244 (534)
T COG4172 232 QH-GEIVETGTTET 244 (534)
T ss_pred ec-cEEeecCcHHH
Confidence 75 99999998653
No 427
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.7e-32 Score=304.93 Aligned_cols=190 Identities=22% Similarity=0.349 Sum_probs=153.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDL-HIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~ 72 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++. .+...||+||+.|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 47999999999999999999999987 99999999987421 12356999999852 344579999999875
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
...+.. ..+ ...+++++++.+||+ +..++.+.+ |||||||
T Consensus 112 ~~~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~q 152 (290)
T PRK13634 112 MNFGVS-----EED-----------------------------AKQKAREMIELVGLPEELLARSPFE-----LSGGQMR 152 (290)
T ss_pred HHcCCC-----HHH-----------------------------HHHHHHHHHHHCCCChhhhhCCccc-----CCHHHHH
Confidence 422110 000 012357788999997 556777765 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+|||||+.+|++|||||||+|||+.++.++.+.|+++++..+.|++++ +|...++.+.||||++|++|++++.|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii-tHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV-THSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999876556676665 45566888999999999999999999987
Q ss_pred hH
Q 000853 232 YI 233 (1252)
Q Consensus 232 ~~ 233 (1252)
++
T Consensus 232 ~~ 233 (290)
T PRK13634 232 EI 233 (290)
T ss_pred HH
Confidence 75
No 428
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.6e-32 Score=296.06 Aligned_cols=186 Identities=22% Similarity=0.354 Sum_probs=151.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999886 9999999998765332 2468999999888999999999998653
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.... .. ++ .+.+++++++.+||++..++.+++ ||||||||+
T Consensus 114 ~~~~----~~-~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrl 154 (233)
T PRK11629 114 IGKK----KP-AE-----------------------------INSRALEMLAAVGLEHRANHRPSE-----LSGGERQRV 154 (233)
T ss_pred hcCC----CH-HH-----------------------------HHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHH
Confidence 2110 00 00 012346788899998877777765 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
+||+|++.+|+||||||||+|||+.++.++.+.|+++++..+.+++++.|++ .++.. +|++++|++|+++..|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999998754567777766554 45554 689999999999988863
No 429
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=7.7e-32 Score=313.32 Aligned_cols=193 Identities=24% Similarity=0.396 Sum_probs=158.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||||+|+|.++|+ +|+|.++|.++.... .++.++||+|+..+++++||+||+.++......
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~ 107 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS 107 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence 47899999999999999999999987 999999999876533 245799999999888999999999886421100
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
...... .+.+.+++++++.+|+.+..++.+.+ |||||||||+|||
T Consensus 108 --~~~~~~----------------------------~~~~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv~IAr 152 (402)
T PRK09536 108 --RFDTWT----------------------------ETDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLAR 152 (402)
T ss_pred --cccCCC----------------------------HHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 000000 00122457889999999888888766 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+++|+||||||||+|||+.++.++.+.|+++++ .+.|++++ +|...++.++||++++|++|++++.|+++++
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIiv-sHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAA-IHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999975 46666654 5667788899999999999999999998775
No 430
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=5.9e-32 Score=295.09 Aligned_cols=187 Identities=30% Similarity=0.494 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||+||+.+.....+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999887 99999999887532 12356899999988888999999998865432110
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. .+ .+.+++++++.+||++..++.+++ ||||||||++||+|
T Consensus 107 ----~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 147 (220)
T cd03263 107 ----K-SE-----------------------------IKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIA 147 (220)
T ss_pred ----H-HH-----------------------------HHHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHHH
Confidence 0 00 011246788899998888888766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
|+.+|++|+|||||+|||+.++.++.+.|+++++ +.|++++ +|...++.+.+|++++|++|++++.|++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEE-cCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999998864 4555554 455567778999999999999999998665
No 431
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.7e-32 Score=305.13 Aligned_cols=203 Identities=23% Similarity=0.378 Sum_probs=158.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEecccc-ccCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYD-LHIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~-~~~~~lTV~e~l~f~~ 72 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ ..+...||.||+.|+.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 47999999999999999999999987 99999999987421 1245789999985 2333469999999876
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
...+.. ..+ .+.+++++++.+||. +..++.+.+ |||||||
T Consensus 111 ~~~~~~-----~~~-----------------------------~~~~~~~~l~~~~L~~~~~~~~~~~-----LSgGqkq 151 (288)
T PRK13643 111 QNFGIP-----KEK-----------------------------AEKIAAEKLEMVGLADEFWEKSPFE-----LSGGQMR 151 (288)
T ss_pred HHcCCC-----HHH-----------------------------HHHHHHHHHHHcCCChhhccCCccc-----CCHHHHH
Confidence 432110 000 012346788889996 355666654 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
|++||++|+.+|+||||||||+|||+.++..+.+.|+++.+ .+.|++++. |...++...||+|++|++|++++.|+++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vt-Hd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVT-HLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998875 466766654 5556888899999999999999999988
Q ss_pred hHH---HHHHhcCCCCCCC
Q 000853 232 YIC---KFFEDCGFRCPER 247 (1252)
Q Consensus 232 ~~~---~~f~~~G~~~p~~ 247 (1252)
++. ..+...|+.+|..
T Consensus 230 ~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 230 DVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHcCHHHHHHcCCCCChH
Confidence 763 2344556665543
No 432
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=9.2e-32 Score=294.59 Aligned_cols=189 Identities=26% Similarity=0.344 Sum_probs=152.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+.+........
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-- 85 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLPD-- 85 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcccC--
Confidence 47999999999999999999999886 9999999988765332 2489999998999999999998763210000
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
.. ..+ .+.+++++++.+||++..++.+++ ||||||||++||+||+
T Consensus 86 ~~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~ 130 (230)
T TIGR01184 86 LS-KSE-----------------------------RRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALS 130 (230)
T ss_pred CC-HHH-----------------------------HHHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHHH
Confidence 00 000 011246788899998877887766 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcch
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSY 232 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1252)
.+|+++||||||+|||+.++..+.+.|+++++..+.+++++. |...++.+.+|+|++|++|+++..|+..+
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT-HDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999999999999999999999998765566766655 45567888999999999999998886543
No 433
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.6e-31 Score=328.07 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=167.2
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~~------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVPP------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeCC------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 5888999887631 2469999999999999999999999999999999999877 45899999752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHH-cc-------------CCCCCC-------------------HHHHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAW-LR-------------LSPEID-------------------LKTKAE 777 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-l~-------------~~~~~~-------------------~~~~~~ 777 (1252)
..+||++|++.+++.+||.||+.++.. .+ ...... ..+.++
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999988889999999987531 10 000000 001234
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q 000853 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857 (1252)
Q Consensus 778 ~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 857 (1252)
++.++++.+|+.. .+.. +.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 6788899999853 4443 4689999999999999999999999999999999999999999999987 35999
Q ss_pred EEecCCCHHHHHHhcceeeeecCcEEE-EecCCC
Q 000853 858 CTIHQPSIDIFEAFDDLILMKNGGRII-YSGPLG 890 (1252)
Q Consensus 858 ~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~~ 890 (1252)
++||+++ .+...+|++++|.+ |+++ +.|+.+
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 246 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 246 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCHH
Confidence 9999975 46677899999985 7775 788753
No 434
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=7.3e-32 Score=294.93 Aligned_cols=187 Identities=24% Similarity=0.441 Sum_probs=151.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++||+.+......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 47999999999999999999999987 9999999988754322 3468999999989999999999988653211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHh-CCcccccccccCCcccccCccccchhHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKIL-GLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. .+ ....++++++.+ ++++..++.+++ ||||||||++|
T Consensus 105 ---~----~~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~l 143 (222)
T cd03224 105 ---R----AK-----------------------------RKARLERVYELFPRLKERRKQLAGT-----LSGGEQQMLAI 143 (222)
T ss_pred ---c----hh-----------------------------HHHHHHHHHHHHHhhhhhhhCchhh-----CCHHHHHHHHH
Confidence 0 00 001124456666 466666777665 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||||+.+|++|+|||||+|||+.++..+.+.|++++. .+.|++++. |...++.+.+|++++|++|++++.|+.+++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVE-QNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999875 466666654 555678899999999999999999986654
No 435
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=5.7e-32 Score=294.75 Aligned_cols=184 Identities=27% Similarity=0.405 Sum_probs=151.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 37899999999999999999999887 99999999887532 12457999999998899899999998764322100
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
..+ .+.+++++++.+||.+..++.+++ ||||||||++||||
T Consensus 110 -----~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 150 (218)
T cd03266 110 -----GDE-----------------------------LTARLEELADRLGMEELLDRRVGG-----FSTGMRQKVAIARA 150 (218)
T ss_pred -----HHH-----------------------------HHHHHHHHHHHcCCHHHHhhhhhh-----cCHHHHHHHHHHHH
Confidence 000 012346788999998888887766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
++.+|++|+|||||+|||+.++..+.+.|+++.. .+.++|++. |...++...+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFST-HIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999864 466766655 5556888899999999999998764
No 436
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.97 E-value=5.6e-32 Score=343.88 Aligned_cols=189 Identities=24% Similarity=0.354 Sum_probs=152.9
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+|+|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|. .|++|||.++..
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~----- 552 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP----- 552 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC-----
Confidence 7999999999999999999999997 9999999999876543 578999999877765 699999987521
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
...+++ .+++...++.. .+ ..++++.||.+|+ .+.+||||||||++||||
T Consensus 553 ---~~~e~i------------------~~al~~a~l~~------~i--~~lp~G~dt~ige-~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 553 ---LTLDEA------------------WEAARMAGLAE------DI--RAMPMGMHTVISE-GGGTLSGGQRQRLLIARA 602 (686)
T ss_pred ---CCHHHH------------------HHHHHHcCcHH------HH--HhccccccccccC-CCCCCCHHHHHHHHHHHH
Confidence 111222 22222222221 11 1378899999997 456799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+||+||||||+||+.++.++.+.|+++ ++|+|+..|++ +..+.+|+|++|++|++++.|+++++.+
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999875 46777766654 6678899999999999999999988753
No 437
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=6.8e-32 Score=295.94 Aligned_cols=189 Identities=24% Similarity=0.351 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCC-----CCCCceeEEEEECCccCCCcc-----ccceEEEeccccccCCCCCHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKL-----SHSLKVSGEVSYNGYRLDEFV-----PQKTSAYISQYDLHIAEMTVRETIDF 70 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~-----~~~~~~~G~V~~~g~~~~~~~-----~~~~~~yv~Q~~~~~~~lTV~e~l~f 70 (1252)
+++|+||||||||||+++|+|.+ +|+ +|+|.++|.++.... .++.++|++|++.++ .+||+||+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 47999999999999999999999 776 999999998875432 245689999988877 7999999988
Q ss_pred HHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCcccc
Q 000853 71 SARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQK 150 (1252)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqk 150 (1252)
+....+.. . .+ +.+.+++++++.+||.+..+..+. .+.||||||
T Consensus 104 ~~~~~~~~----~-~~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~ 147 (227)
T cd03260 104 GLRLHGIK----L-KE----------------------------ELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQ 147 (227)
T ss_pred HHHhcCCC----c-HH----------------------------HHHHHHHHHHHHcCCChHHhccCC---cccCCHHHH
Confidence 65332100 0 00 001234668888999876666530 134999999
Q ss_pred chhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 151 KRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .++|++ +|...++.+.||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIV-THNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEE-eccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999999999998653 555554 4556688889999999999999999986
Q ss_pred ch
Q 000853 231 SY 232 (1252)
Q Consensus 231 ~~ 232 (1252)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 54
No 438
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9e-32 Score=291.46 Aligned_cols=185 Identities=23% Similarity=0.355 Sum_probs=151.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+...... .
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~- 100 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL-K- 100 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc-C-
Confidence 47999999999999999999999987 999999998875432 23568999999988999999999987532110 0
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
.. . +.+.+++++++.+||.+..++.+.+ ||||||||++|||||
T Consensus 101 -~~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ia~al 143 (211)
T cd03298 101 -LT---A----------------------------EDRQAIEVALARVGLAGLEKRLPGE-----LSGGERQRVALARVL 143 (211)
T ss_pred -cc---H----------------------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHHH
Confidence 00 0 0012346788899998877887765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+.+|++++|||||+|||+.++..+.+.|+++++..+.+++++ +|...++.+.||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV-THQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999876446666664 55666888899999999999998654
No 439
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2e-31 Score=275.57 Aligned_cols=157 Identities=22% Similarity=0.324 Sum_probs=134.3
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
++.+++++ +++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE---------EEEEcccCC--------
Confidence 35678884 8999999999999999999999999999887 458999999863 688887532
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 835 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD 835 (1252)
||||||||++|||+|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCC-CEEEEEecCCCHHHHHHhcceeeeecCcEEEEe--cCCCCcchhHHHHHhh
Q 000853 836 ARAAAIVMRAVKNVVETG-RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYS--GPLGQHSCKVIDYFES 902 (1252)
Q Consensus 836 ~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~--g~~~~~~~~~~~~f~~ 902 (1252)
+.++..+.+.|+++++++ .|||++||+++ .+...+|++++|.+ +-.+++ |++...++.+..|+.+
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFLRG 171 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHHHh
Confidence 999999999999987664 99999999864 45567899999975 444554 7777666667777754
No 440
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=1.3e-31 Score=300.52 Aligned_cols=191 Identities=23% Similarity=0.360 Sum_probs=156.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++++||+||+.+....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999886 999999998875422 235689999998889999999999875421
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.. .... . +.+.+++++++.+||.+..++.+++ |||||||||+
T Consensus 112 ~~---~~~~--~----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~ 153 (269)
T PRK11831 112 HT---QLPA--P----------------------------LLHSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAA 153 (269)
T ss_pred cc---CCCH--H----------------------------HHHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 10 0000 0 0011246678899999888888766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||+||+.+|++|||||||+|||+.++..+.+.|+++.+..+.+++++. |...++.+.||++++|++|++++.|+++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS-HDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764466666655 556688889999999999999999987765
No 441
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=1.9e-31 Score=293.86 Aligned_cols=190 Identities=23% Similarity=0.330 Sum_probs=154.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc--cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP--QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~--~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|++||+.+....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~- 104 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL- 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-
Confidence 47899999999999999999999887 9999999987754221 24689999998888899999999876532210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. ..+ .+..++++++.+||++..++.+++ ||||||||++||||
T Consensus 105 -~---~~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~lara 146 (236)
T TIGR03864 105 -S---RAE-----------------------------ARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARA 146 (236)
T ss_pred -C---HHH-----------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHH
Confidence 0 000 011246678889998888888766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|+.+|+++||||||+|||+.++..+.+.|+++++..+.+++++.|++ .++. .+|++++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999998754567776665554 4554 59999999999999999876654
No 442
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.9e-31 Score=266.76 Aligned_cols=204 Identities=24% Similarity=0.385 Sum_probs=162.7
Q ss_pred cccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCccc---ccceEEEEccCCC--CC
Q 000853 675 KKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHT---FARISGYCEQNDI--HS 749 (1252)
Q Consensus 675 ~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~~--~~ 749 (1252)
..+++|+++|++|..|+++-|+|.||||||||+++|+|... +++|.|.|||.++++.. ....++-|+|+|. ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 35789999999999999999999999999999999999887 56999999999987643 2334567899984 57
Q ss_pred CCCCHHHHHHHHHHccCCC-CCC---HHHHHHHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000853 750 PNITVEESVIFSAWLRLSP-EID---LKTKAEFVNEVLQTI--ELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPS 823 (1252)
Q Consensus 750 ~~~tv~e~l~~~~~l~~~~-~~~---~~~~~~~~~~~l~~~--~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~ 823 (1252)
+.+|+.||+..+.. |+.. ... ...+.+...+-+..+ ||++..++.+| -|||||||-++++.|.++.|+
T Consensus 95 ~~lTieENl~la~~-Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pk 168 (263)
T COG1101 95 PELTIEENLALAES-RGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPK 168 (263)
T ss_pred ccccHHHHHHHHHh-cCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCc
Confidence 99999999998753 4221 111 123333444555554 55666666654 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecC
Q 000853 824 IIFMDEPTSGLDARAAAIVMRAVKNVVET-GRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 824 illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 888 (1252)
||+|||-|++|||.+++.+++.-.++.++ +.|.+++||.++ +...+-+|.++|+ +|+|+.+-.
T Consensus 169 iLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~ 232 (263)
T COG1101 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVT 232 (263)
T ss_pred EEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEcc
Confidence 99999999999999999999999998654 789999999765 4555667777776 699998743
No 443
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=299.40 Aligned_cols=189 Identities=23% Similarity=0.283 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||+||+.|+....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 47999999999999999999999987 999999998875432 2356999999863 4566899999998643211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. ..+ .+.+++++++.+||.+..++.+.+ |||||||||+||
T Consensus 110 ~~-----~~~-----------------------------~~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~la 150 (274)
T PRK13647 110 LD-----KDE-----------------------------VERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAIA 150 (274)
T ss_pred CC-----HHH-----------------------------HHHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHHH
Confidence 00 000 012346788899998888888866 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|++++ +|...++.+.||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~-tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVA-THDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999999875 36666655 4556678889999999999999999987543
No 444
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.8e-31 Score=289.57 Aligned_cols=183 Identities=25% Similarity=0.416 Sum_probs=149.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 47999999999999999999999987 99999999876421 123568999999888889999999987642
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.. .... .+.+++++++.+|+++..++.+++ ||||||||+
T Consensus 102 ~~-------~~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv 140 (214)
T cd03297 102 RK-------RNRE-----------------------------DRISVDELLDLLGLDHLLNRYPAQ-----LSGGEKQRV 140 (214)
T ss_pred hC-------CHHH-----------------------------HHHHHHHHHHHcCCHhHhhcCccc-----CCHHHHHHH
Confidence 11 0000 011246688889998777777765 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
+||+|++.+|++++|||||+|||+.++..+.+.++++++..+.+++++. |...++...+|++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT-HDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe-cCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999998764466666654 5556788899999999999998765
No 445
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=300.57 Aligned_cols=190 Identities=21% Similarity=0.311 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEecccc-ccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYD-LHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~-~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ ..++..||+|||.|+....+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 47999999999999999999999987 999999999875432 235689999986 36778899999998653221
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. ..+ .+.+++++++.+||.+..+..+++ ||||||||++||
T Consensus 112 ~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qrv~lA 152 (279)
T PRK13650 112 IP-----HEE-----------------------------MKERVNEALELVGMQDFKEREPAR-----LSGGQKQRVAIA 152 (279)
T ss_pred CC-----HHH-----------------------------HHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHH
Confidence 00 000 012357788999998877887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||+.+|++|+|||||+|||+.++..+.+.++++++..+.|++++.|+. .++ ..||+|++|++|+++..|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999765577877776654 455 579999999999999999987653
No 446
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=1.1e-31 Score=334.04 Aligned_cols=193 Identities=28% Similarity=0.387 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|+||||||||||++.|.|.++|. +|+|.+||.++++.. .++.++||+|++.+|. .||+|||.++..
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~---- 428 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP---- 428 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC----
Confidence 37899999999999999999999986 999999999987654 3678999999777776 899999998642
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
....+++.++.+.++. .+.+ ..+|++.||.||+ ++..||||||||++|||
T Consensus 429 ---~at~eei~~a~k~a~~------------------------~d~I--~~lp~g~dt~vge-~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 429 ---DATDEEIEEALKLANA------------------------HEFI--ANLPDGYDTIVGE-RGVNLSGGQRQRLAIAR 478 (567)
T ss_pred ---CCCHHHHHHHHHHhCh------------------------HHHH--HhCcccccceecC-CCccCCHHHHHHHHHHH
Confidence 1122333333332211 1112 2368899999996 45669999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++++|+||+||||||+||+.++..|++.++++. .++|+++..|.+ ...+.+|+|+||++|++++.|+++++.+
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRl--sti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRL--STIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccH--hHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999775 356777755444 4455599999999999999999999865
No 447
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=2.5e-31 Score=304.14 Aligned_cols=193 Identities=22% Similarity=0.266 Sum_probs=156.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYD--LHIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1252)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++ .+++.+||.||+.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999886 999999999876432 235699999986 5888999999998865
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
........ .++ .+.+++++++.+||. +..++..++ |||||||
T Consensus 126 ~~~~~~~~---~~~-----------------------------~~~~~~~~l~~vgl~~~~~~~~p~~-----LSgG~~Q 168 (331)
T PRK15079 126 RTYHPKLS---RQE-----------------------------VKDRVKAMMLKVGLLPNLINRYPHE-----FSGGQCQ 168 (331)
T ss_pred HHhccCCC---HHH-----------------------------HHHHHHHHHHHcCCChHHhcCCccc-----CCHHHHH
Confidence 32210000 000 012346788899994 456777655 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+||+||+.+|++||+||||+|||..++.++.+.|+++.+..+.++++ ++|....+.+++|+|++|++|++++.|+.+
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~-iTHdl~~~~~~~dri~vl~~G~ive~g~~~ 247 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF-IAHDLAVVKHISDRVLVMYLGHAVELGTYD 247 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999987655555554 566777888899999999999999999987
Q ss_pred hHH
Q 000853 232 YIC 234 (1252)
Q Consensus 232 ~~~ 234 (1252)
++.
T Consensus 248 ~i~ 250 (331)
T PRK15079 248 EVY 250 (331)
T ss_pred HHH
Confidence 764
No 448
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.97 E-value=8.9e-32 Score=343.71 Aligned_cols=190 Identities=23% Similarity=0.327 Sum_probs=153.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+++|+|+++|+ +|+|.+||.++.+.. .++.++||+|++.+| +.|++|||.++..
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gTi~eNi~l~~~----- 578 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLWDP----- 578 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hccHHHHhhCCCC-----
Confidence 7999999999999999999999997 999999999987654 367899999987766 5799999986421
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
. .+.++..+++...+..+ .+ -.++++.||.+|+ .+.+||||||||++||||
T Consensus 579 --~------------------~~~~~i~~al~~~~l~~------~i--~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 579 --T------------------IPDADLVRACKDAAIHD------VI--TSRPGGYDAELAE-GGANLSGGQRQRLEIARA 629 (710)
T ss_pred --C------------------CCHHHHHHHHHHhCCHH------HH--HhCcCcccceecc-CCCCCCHHHHHHHHHHHH
Confidence 0 11122222332222221 11 1378899999997 456799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+||+||||||+||+.++..+.+.|++ .++|+|+..|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999975 367887766654 5677899999999999999999998864
No 449
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=295.27 Aligned_cols=180 Identities=24% Similarity=0.334 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+||+.+... .
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~ 108 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLK------G 108 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhccc------c
Confidence 47999999999999999999999987 9999999977542 24568999999888888999999987421 0
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
.. +.+++++++.+||.+..+..+++ |||||||||+|||||+
T Consensus 109 --~~--------------------------------~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqrl~laraL~ 149 (257)
T PRK11247 109 --QW--------------------------------RDAALQALAAVGLADRANEWPAA-----LSGGQKQRVALARALI 149 (257)
T ss_pred --hH--------------------------------HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHh
Confidence 00 01235678889998877777765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
.+|+++||||||+|||+.++..+.+.|+++.+..+.+++++. |...++.+.||+|++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs-Hd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT-HDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999998665566766654 5555778899999999999999988643
No 450
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-31 Score=292.49 Aligned_cols=191 Identities=20% Similarity=0.371 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+..... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~-- 100 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-L-- 100 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-c--
Confidence 37899999999999999999999986 899999998875432 2356899999988999999999998753110 0
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
... . ..+.+++++++.+||.+..++.+++ ||||||||++||+|+
T Consensus 101 ~~~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral 144 (232)
T PRK10771 101 KLN---A----------------------------AQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCL 144 (232)
T ss_pred CCC---H----------------------------HHHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHH
Confidence 000 0 0012357788999998888888866 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
+.+|++++|||||+|||+.++..+.+.|+++.+..+.+++++. |...++.+.+|++++|++|++++.|+.+++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS-HSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999998764466766654 5555788899999999999999999876653
No 451
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=2.7e-31 Score=291.76 Aligned_cols=187 Identities=29% Similarity=0.337 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYD--LHIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 47999999999999999999999887 999999999875432 245799999987 4667899999998865
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
....... ..+ . .+...+++++.+|+. +..++.+++ |||||||
T Consensus 110 ~~~~~~~----~~~-----------------~-----------~~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~q 152 (228)
T cd03257 110 RIHGKLS----KKE-----------------A-----------RKEAVLLLLVGVGLPEEVLNRYPHE-----LSGGQRQ 152 (228)
T ss_pred HhccCCc----HHH-----------------H-----------HHHHHHHHHHHCCCChhHhhCCchh-----cCHHHHH
Confidence 3221000 000 0 000124577888885 456776655 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++..+.++|++.|+ ..++...||++++|++|+++..|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD-LGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999876446677666554 55777899999999999998765
No 452
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-31 Score=302.95 Aligned_cols=188 Identities=21% Similarity=0.382 Sum_probs=150.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------------------cccceEEEecccc--ccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------------------VPQKTSAYISQYD--LHI 59 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------------------~~~~~~~yv~Q~~--~~~ 59 (1252)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ..++.++||+|++ .++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 47999999999999999999999987 99999999876432 1245699999986 345
Q ss_pred CCCCHHHHHHHHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-cccccccc
Q 000853 60 AEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVG 138 (1252)
Q Consensus 60 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg 138 (1252)
..||+||+.|+...... ..++ ...+++++++.+||+ +..++.+.
T Consensus 131 -~~tv~eni~~~~~~~~~-----~~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 131 -KDTIEKDIMFGPVALGV-----KKSE-----------------------------AKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred -cchHHHHHHhhHHhcCC-----CHHH-----------------------------HHHHHHHHHHHcCCChhHhcCCcc
Confidence 46999999886532110 0000 011346788889997 44566554
Q ss_pred CCcccccCccccchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEE
Q 000853 139 DPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVML 218 (1252)
Q Consensus 139 ~~~~rgLSGGqkqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~v 218 (1252)
+ |||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.. .+.|++++. |...++...||+|++
T Consensus 176 ~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tiiivt-Hd~~~~~~~adri~v 248 (320)
T PRK13631 176 G-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVIT-HTMEHVLEVADEVIV 248 (320)
T ss_pred c-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEE
Confidence 4 999999999999999999999999999999999999999999998865 466766554 555678889999999
Q ss_pred EcCCcEEEeCCcchH
Q 000853 219 MAEGKIVYHGPRSYI 233 (1252)
Q Consensus 219 l~~G~i~~~G~~~~~ 233 (1252)
|++|++++.|+++++
T Consensus 249 l~~G~i~~~g~~~~~ 263 (320)
T PRK13631 249 MDKGKILKTGTPYEI 263 (320)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998876
No 453
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=2e-31 Score=291.03 Aligned_cols=181 Identities=23% Similarity=0.381 Sum_probs=146.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 47899999999999999999999987 9999999988754321 2468999999888889999999988643
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.... .. .+ ...+++++++.+||++..++.+++ |||||||||
T Consensus 110 ~~~~----~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv 150 (221)
T TIGR02211 110 IGKK----SV-KE-----------------------------AKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRV 150 (221)
T ss_pred hcCC----CH-HH-----------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHH
Confidence 2110 00 00 011246688889998877777765 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEE
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV 225 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~ 225 (1252)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++++..+.+++++.|++ .++ ..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999998765567777766654 455 457999999999975
No 454
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.2e-31 Score=294.38 Aligned_cols=190 Identities=19% Similarity=0.333 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHhcc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-----VPQKTSAYISQYDLHIAEMTVRETIDFSARCQ 75 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~ 75 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 47899999999999999999999887 99999999887542 12456899999988888999999998764210
Q ss_pred CCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHH
Q 000853 76 GTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. +. . .. +.+.+++++++.+||++..+..+.+ ||||||||++|
T Consensus 106 ~-~~--~-~~-----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~l 147 (240)
T PRK09493 106 R-GA--S-KE-----------------------------EAEKQARELLAKVGLAERAHHYPSE-----LSGGQQQRVAI 147 (240)
T ss_pred c-CC--C-HH-----------------------------HHHHHHHHHHHHcCChHHHhcChhh-----cCHHHHHHHHH
Confidence 0 00 0 00 0012346788899998777777755 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|||++.+|++++|||||+|||+.++.++.+.|+++.+ .+.+++++. |...++...||++++|++|++++.|+.+++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVT-HEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999998864 466766655 455678889999999999999999987665
No 455
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=266.66 Aligned_cols=192 Identities=27% Similarity=0.416 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
|++|+||||||||||||+|+|++.|+ +|+|.+||.++..+.+ .+..+..+|+..+-+..||+|-+.+++.-...
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 58999999999999999999999997 9999999999877654 34578999998888889999999998643211
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
+.. ..+ | ...++++|...++.+.+.... +.|||||||||.+||
T Consensus 106 g~~---~~e--------------~---------------~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlAR 148 (259)
T COG4559 106 GRE---PEE--------------D---------------ERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLAR 148 (259)
T ss_pred CCC---chh--------------h---------------HHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHH
Confidence 111 000 0 112455667777776655544 349999999999999
Q ss_pred HHhc------CCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 158 LIVG------PTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 158 al~~------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
.|+. ++++|+||||||+||...+..+++..+.+++. +..++ .+.|+..-...+||||++|++||++..|+++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~-~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVL-AVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEE-EEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 9974 44689999999999999999999999999975 44444 4567777888999999999999999999988
Q ss_pred hHH
Q 000853 232 YIC 234 (1252)
Q Consensus 232 ~~~ 234 (1252)
+..
T Consensus 227 ~vl 229 (259)
T COG4559 227 DVL 229 (259)
T ss_pred Hhc
Confidence 764
No 456
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=2.5e-31 Score=296.00 Aligned_cols=190 Identities=21% Similarity=0.301 Sum_probs=153.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-----------cccceEEEeccccccCCCCCHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-----------VPQKTSAYISQYDLHIAEMTVRETID 69 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-----------~~~~~~~yv~Q~~~~~~~lTV~e~l~ 69 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||+||+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 47899999999999999999999886 99999999876532 12456899999988888899999998
Q ss_pred HHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccc
Q 000853 70 FSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQ 149 (1252)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGq 149 (1252)
++..... ... . + +.+.+++++++.+||.+..++.+++ |||||
T Consensus 108 ~~~~~~~-~~~--~-~-----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~Gq 149 (250)
T PRK11264 108 EGPVIVK-GEP--K-E-----------------------------EATARARELLAKVGLAGKETSYPRR-----LSGGQ 149 (250)
T ss_pred HHHHHhc-CCC--H-H-----------------------------HHHHHHHHHHHHcCCcchhhCChhh-----CChHH
Confidence 7542110 000 0 0 0012246678889998877777765 99999
Q ss_pred cchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCC
Q 000853 150 KKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 150 kqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1252)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.+++++ +|...++.+.+|++++|++|++++.|+
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIV-THEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998865 36666665 455667888999999999999999998
Q ss_pred cchH
Q 000853 230 RSYI 233 (1252)
Q Consensus 230 ~~~~ 233 (1252)
.+++
T Consensus 228 ~~~~ 231 (250)
T PRK11264 228 AKAL 231 (250)
T ss_pred HHHH
Confidence 7665
No 457
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.9e-31 Score=294.65 Aligned_cols=186 Identities=23% Similarity=0.362 Sum_probs=152.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||+||+.+.....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE-- 101 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC--
Confidence 47999999999999999999999887 99999999887542 235899999988888899999998764321100
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
..+ .+.+++++++.+||.+..++.+++ |||||||||+||+||+
T Consensus 102 ---~~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrl~laral~ 144 (255)
T PRK11248 102 ---KMQ-----------------------------RLEIAHQMLKKVGLEGAEKRYIWQ-----LSGGQRQRVGIARALA 144 (255)
T ss_pred ---HHH-----------------------------HHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHh
Confidence 000 012346788999998877777765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEc--CCcEEEeCCcc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMA--EGKIVYHGPRS 231 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~~ 231 (1252)
.+|++|||||||+|||+.++..+.+.|+++++..+.++|++. |...++...||+|++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs-H~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT-HDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999998654566766654 55668889999999998 59999888643
No 458
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=1.4e-31 Score=334.92 Aligned_cols=193 Identities=22% Similarity=0.356 Sum_probs=154.4
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|+ .|++|||.++..
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----- 442 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART----- 442 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC-----
Confidence 7999999999999999999999997 999999999887654 3567999999877775 799999987521
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
+. .+.++..+++...++. +.++ .|+++.||.+|+. ++.||||||||++||||
T Consensus 443 ~~-------------------~~~~~i~~al~~~~l~------~~i~--~lp~Gldt~ig~~-g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 443 EQ-------------------YSREQIEEAARMAYAM------DFIN--KMDNGLDTVIGEN-GVLLSGGQRQRIAIARA 494 (582)
T ss_pred CC-------------------CCHHHHHHHHHHhCcH------HHHH--hcccccCceeCCC-CCcCCHHHHHHHHHHHH
Confidence 00 0111222222222221 1112 2788999999973 56699999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|+||+||||||+||+.++..+.+.++++. .++|+|+..|.+ +..+.||+|++|++|++++.|+++++.+
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999998874 357877776655 6778899999999999999999988754
No 459
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.97 E-value=1.5e-31 Score=340.31 Aligned_cols=192 Identities=23% Similarity=0.418 Sum_probs=155.9
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+|. .|++|||.++..
T Consensus 494 iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~----- 564 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAP----- 564 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCC-----
Confidence 7999999999999999999999997 9999999999876543 578999999877765 699999987521
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
+.+.++..+++...+..+ .+ -.|+++.||.+|+ .+..||||||||++||||
T Consensus 565 --------------------~~~~~~i~~a~~~~~l~~------~i--~~lp~gl~T~i~e-~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 565 --------------------YADDEEILRAAELAGVTE------FV--RRHPDGLDMQIGE-RGRSLSGGQRQAVALARA 615 (694)
T ss_pred --------------------CCCHHHHHHHHHHcChHH------HH--HhCcccccceecC-CCCCCCHHHHHHHHHHHH
Confidence 011122222332222221 11 1388999999998 456699999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+|++||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999875 367887776665 4678999999999999999999998865
No 460
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=1.9e-31 Score=333.84 Aligned_cols=191 Identities=24% Similarity=0.317 Sum_probs=154.7
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+|+||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|+ .|++|||.++..
T Consensus 370 iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~~----- 440 (592)
T PRK10790 370 VALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRD----- 440 (592)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCCC-----
Confidence 7999999999999999999999997 899999999887654 3578999999888877 599999988531
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
...+++. +++...+++ +.++ .|+++.||.+|+ .+..||||||||++||||
T Consensus 441 ---~~d~~i~------------------~a~~~~gl~------~~i~--~lp~Gldt~i~e-~g~~LSGGqrQRialARa 490 (592)
T PRK10790 441 ---ISEEQVW------------------QALETVQLA------ELAR--SLPDGLYTPLGE-QGNNLSVGQKQLLALARV 490 (592)
T ss_pred ---CCHHHHH------------------HHHHHcCcH------HHHH--hccccccccccC-CCCCCCHHHHHHHHHHHH
Confidence 0111221 122222211 1122 278889999998 456699999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|+++|+||+||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999998875 357888777765 6677899999999999999999998753
No 461
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=7.6e-31 Score=270.93 Aligned_cols=154 Identities=22% Similarity=0.334 Sum_probs=127.7
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCCHH
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVE 755 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~tv~ 755 (1252)
.+.+|+|+||++++||+++|+|||||||||||+++.+ .+|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH-----------
Confidence 3568999999999999999999999999999999963 368999987632 112234677766
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCC
Q 000853 756 ESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 832 (1252)
Q Consensus 756 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~g~~~~~~lSgGqrqrv~ia~al~~~--p~illlDEPTs 832 (1252)
.++++.++|.+. .+.. ++.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 235677777642 3333 468999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeec
Q 000853 833 GLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKN 879 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 879 (1252)
|||+.++..+.+.|+++.+.|+|||++||+++ ....+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--~~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--VLSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEECC
Confidence 99999999999999999777999999999975 3467999999964
No 462
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=2.2e-31 Score=297.71 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=158.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||.++|.|..+|. +|.|.+||.+++.++. .+.+||.||+-.+|+ .||.|||.= ..
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR---f~--- 434 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR---FG--- 434 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh---cc---
Confidence 6899999999999999999999986 9999999999887665 467999999555655 699999952 11
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
+....+.+.++.+.++++ |- ++.|++++||.||+ .+.+||||||||+++|||
T Consensus 435 -~~~d~~kIieAA~lAgvH-----------------------el---Il~lP~GYdT~iG~-~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 435 -EEADPEKVIEAARLAGVH-----------------------EL---ILRLPQGYDTRIGE-GGATLSGGQRQRIALARA 486 (580)
T ss_pred -ccCCHHHHHHHHHHcChH-----------------------HH---HHhCcCCccCccCC-CCCCCCchHHHHHHHHHH
Confidence 111222233333332210 11 35699999999998 567799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~f 237 (1252)
|+++|.+++||||-|+||...+..+.+.+.+... +|.++|+..|. +.++..+|+|++|++|++..+|+.+|+....
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHR--Ps~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHR--PSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecC--HHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999999999998765 56777766554 4689999999999999999999999987654
No 463
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=3.4e-31 Score=290.54 Aligned_cols=191 Identities=23% Similarity=0.249 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCC----CCceeEEEEECCccCCCccc-cceEEEeccccc--cCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSH----SLKVSGEVSYNGYRLDEFVP-QKTSAYISQYDL--HIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~----~~~~~G~V~~~g~~~~~~~~-~~~~~yv~Q~~~--~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+.+|++||+.+...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 4799999999999999999999987 5 8999999988754322 247899999874 5567899999987543
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc---ccccccccCCcccccCcccc
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD---ICADTIVGDPMRRGVSGGQK 150 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~---~~~~t~vg~~~~rgLSGGqk 150 (1252)
..+. . . . +.+.+++++++.+||+ +..++.+++ ||||||
T Consensus 91 ~~~~--~--~-~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----LS~G~~ 131 (230)
T TIGR02770 91 SLGK--L--S-K-----------------------------QARALILEALEAVGLPDPEEVLKKYPFQ-----LSGGML 131 (230)
T ss_pred HcCc--c--H-H-----------------------------HHHHHHHHHHHHcCCCchHHHHhCChhh-----cCHHHH
Confidence 2110 0 0 0 0012356788899997 345666655 999999
Q ss_pred chhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 151 KRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
|||+||||++.+|+||+|||||+|||+.++..+.+.|+++++..+.|++++. |...++...+|++++|++|+++..|+.
T Consensus 132 qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~ 210 (230)
T TIGR02770 132 QRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT-HDLGVVARIADEVAVMDDGRIVERGTV 210 (230)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998764466666655 455588889999999999999999987
Q ss_pred chHH
Q 000853 231 SYIC 234 (1252)
Q Consensus 231 ~~~~ 234 (1252)
+++.
T Consensus 211 ~~~~ 214 (230)
T TIGR02770 211 KEIF 214 (230)
T ss_pred HHHH
Confidence 7653
No 464
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.1e-31 Score=292.61 Aligned_cols=192 Identities=21% Similarity=0.218 Sum_probs=155.7
Q ss_pred ccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEE-----------ECCeeCCcc--c-cc--ceEEE
Q 000853 678 QLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIR-----------IGGYPKVQH--T-FA--RISGY 741 (1252)
Q Consensus 678 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~~--~~~~~ 741 (1252)
.+|+|+| .+++||+++|+||||||||||+++|+|..+ +.+|+|. ++|.+.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 599999999999999999999999999987 4589996 778765321 1 11 23689
Q ss_pred EccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000853 742 CEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVAN 821 (1252)
Q Consensus 742 v~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~ 821 (1252)
++|+....+ .++.+++.+.. + ....++.+.++++.+++.+..+.. +..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHhC
Confidence 999877776 48888887642 1 122345678999999998766554 468999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCC
Q 000853 822 PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPL 889 (1252)
Q Consensus 822 p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 889 (1252)
|++++|||||+|||+.++..+.+.|++++++++|||++||+++ .+...+|++++|. |++++.|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877899999999964 4555789998884 567665543
No 465
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=9.8e-31 Score=323.10 Aligned_cols=207 Identities=26% Similarity=0.345 Sum_probs=163.7
Q ss_pred EEEEEeEEEEEecCcccccccccccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeC
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.++. ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 4 ~i~~~nls~~~~~------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVPP------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecCC------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 4788898886631 2469999999999999999999999999999999999877 45899999752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHHc-cC-----------CCCCCHH---------------------HHHH
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWL-RL-----------SPEIDLK---------------------TKAE 777 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~l-~~-----------~~~~~~~---------------------~~~~ 777 (1252)
..+||++|++.+++.+||.||+.++... +. ......+ ...+
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3689999999888899999999875311 00 0000010 0123
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q 000853 778 FVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVV 857 (1252)
Q Consensus 778 ~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 857 (1252)
++.++++.+++.. .+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 3333 4689999999999999999999999999999999999999999999876 35999
Q ss_pred EEecCCCHHHHHHhcceeeeecCcEEE-EecCCC
Q 000853 858 CTIHQPSIDIFEAFDDLILMKNGGRII-YSGPLG 890 (1252)
Q Consensus 858 ~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~~ 890 (1252)
++||+++ .+...+|++++|.+ |+++ +.|+.+
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHH
Confidence 9999975 46677899999975 7765 778764
No 466
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=2.5e-31 Score=288.92 Aligned_cols=180 Identities=23% Similarity=0.374 Sum_probs=147.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 37899999999999999999999886 999999998875432 235689999999899999999999886543
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
+.. . .++ .+.+++++++.+||++..++.+++ ||||||||++
T Consensus 106 ~~~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ 146 (214)
T cd03292 106 TGV--P---PRE-----------------------------IRKRVPAALELVGLSHKHRALPAE-----LSGGEQQRVA 146 (214)
T ss_pred cCC--C---HHH-----------------------------HHHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHHH
Confidence 210 0 000 012346788889998877877765 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
|||||+.+|++++|||||+|||+.++..+.+.++++.+ .+.+++++. |...++.+.||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivt-H~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVAT-HAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999865 466666654 455677788999999999974
No 467
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-31 Score=300.73 Aligned_cols=190 Identities=22% Similarity=0.308 Sum_probs=153.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEecccc--ccCCCCCHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYD--LHIAEMTVRETIDFS 71 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTV~e~l~f~ 71 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .+++ .||+||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 47999999999999999999999987 99999999987532 1245799999975 3444 6999999986
Q ss_pred HhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCcccc
Q 000853 72 ARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQK 150 (1252)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqk 150 (1252)
....+.. ..+ .+.+++++++.+||. +..++.+.+ ||||||
T Consensus 111 ~~~~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~ 151 (286)
T PRK13646 111 PKNFKMN-----LDE-----------------------------VKNYAHRLLMDLGFSRDVMSQSPFQ-----MSGGQM 151 (286)
T ss_pred HHHcCCC-----HHH-----------------------------HHHHHHHHHHHcCCChhhhhCCccc-----CCHHHH
Confidence 5321100 000 012346788899996 567777655 999999
Q ss_pred chhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCc
Q 000853 151 KRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPR 230 (1252)
Q Consensus 151 qRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1252)
||++|||||+.+|+||+|||||+|||+.++.++.+.++++.+..+.|++++. |...++.+.+|+|++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt-H~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS-HDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998765566666654 555678889999999999999999998
Q ss_pred chHH
Q 000853 231 SYIC 234 (1252)
Q Consensus 231 ~~~~ 234 (1252)
+++.
T Consensus 231 ~~~~ 234 (286)
T PRK13646 231 KELF 234 (286)
T ss_pred HHHH
Confidence 7653
No 468
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=2.9e-31 Score=288.31 Aligned_cols=179 Identities=25% Similarity=0.392 Sum_probs=146.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEeccccccCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYDLHIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999886 999999999875432 235689999998888899999999986532
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+. . ... .+.+++++++.+||++..++.+++ |||||||||+
T Consensus 107 ~~~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~ 147 (214)
T TIGR02673 107 RGK--K---ERE-----------------------------IQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVA 147 (214)
T ss_pred cCC--C---HHH-----------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 210 0 000 012346788889998777777765 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCc
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGK 223 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~ 223 (1252)
|||||+.+|++++|||||+|||+.++.++.+.++++.+ .+.+++++. |...++...||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVAT-HDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999864 466666655 55568888999999999985
No 469
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=292.63 Aligned_cols=190 Identities=17% Similarity=0.346 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+..+...
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 47999999999999999999999887 999999998875432 23568999999888988999999987543210
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. .. .. +.+..++++++.+|+.+..++.+++ |||||||||+||
T Consensus 108 ~---~~-~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la 149 (241)
T PRK10895 108 D---LS-AE-----------------------------QREDRANELMEEFHIEHLRDSMGQS-----LSGGERRRVEIA 149 (241)
T ss_pred c---cC-HH-----------------------------HHHHHHHHHHHHcCCHHHhhcchhh-----CCHHHHHHHHHH
Confidence 0 00 00 0012346788889998777777655 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|++.+|++|+|||||+|||+.++.++.+.++.+.. .+.+++++.| ...++.+.+|++++|++|++++.|+++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH-~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDH-NVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEc-CHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 999999999999999999999999999999998864 4667666654 45688899999999999999999987664
No 470
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=303.00 Aligned_cols=192 Identities=24% Similarity=0.402 Sum_probs=152.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc---cceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+||+|+||||||||++.|+|-++|+ +|+|.+||.++..... ++.++.++|. +++...|+|+||..+..
T Consensus 367 vAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr-~hlF~~Tlr~NL~lA~~----- 437 (573)
T COG4987 367 VAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQR-VHLFSGTLRDNLRLANP----- 437 (573)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccc-hHHHHHHHHHHHhhcCC-----
Confidence 6999999999999999999999998 9999999998866554 5678999994 45556799999987531
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
....+++.+.-+. -+++ +.+ .+.+++.||.+|+ .+++||||||||++|||+
T Consensus 438 --~AsDEel~~aL~q------------------vgL~------~l~--~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 438 --DASDEELWAALQQ------------------VGLE------KLL--ESAPDGLNTWLGE-GGRRLSGGERRRLALARA 488 (573)
T ss_pred --CCCHHHHHHHHHH------------------cCHH------HHH--HhChhhhhchhcc-CCCcCCchHHHHHHHHHH
Confidence 1222222222221 1111 111 2367788999998 567899999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++|.++++|||||.|||+.+++++++.+...+ .|+|+++.+|+-. -.+.||+|++|++|+++++|++.++..
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999999998765 4788877665543 356789999999999999999988753
No 471
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=3.8e-31 Score=290.61 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=150.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 47999999999999999999999987 9999999988754322 3468999999989999999999988653211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhC-CcccccccccCCcccccCccccchhHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILG-LDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. . . ....+++++.++ +.+..++.+++ ||||||||++|
T Consensus 105 ~----~-~--------------------------------~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~l 142 (230)
T TIGR03410 105 R----R-S--------------------------------RKIPDEIYELFPVLKEMLGRRGGD-----LSGGQQQQLAI 142 (230)
T ss_pred c----c-h--------------------------------HHHHHHHHHHHHhHHHHhhCChhh-----CCHHHHHHHHH
Confidence 0 0 0 001244555565 45556666655 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
|+||+.+|++++|||||+|||+.++.++.+.|+++++..+.|++++. |...++...+|+|++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE-QYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999998754456666655 445678889999999999999999987665
No 472
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=6.6e-31 Score=284.82 Aligned_cols=186 Identities=22% Similarity=0.337 Sum_probs=151.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+......
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--- 99 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--- 99 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---
Confidence 37899999999999999999999987 999999998875422 24569999999989999999999987532110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
... . ..+.+++++++.+||.+..++.+.+ ||||||||++||||+
T Consensus 100 ~~~--~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral 143 (213)
T TIGR01277 100 KLN--A-----------------------------EQQEKVVDAAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCL 143 (213)
T ss_pred Ccc--H-----------------------------HHHHHHHHHHHHcCcHHHhhCCccc-----CCHHHHHHHHHHHHH
Confidence 000 0 0012246688899998877887765 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCC
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1252)
+.+|++++|||||+|||+.++..+.+.|+++.+..+.|++++. |...++.+.+|++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vs-h~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT-HHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998764466666654 55567778999999999999998874
No 473
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6e-31 Score=289.38 Aligned_cols=190 Identities=25% Similarity=0.367 Sum_probs=156.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+.....+.
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~-- 101 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV-- 101 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC--
Confidence 37899999999999999999999987 899999998875432 245789999998899899999999876432110
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. ..+ .+..++++++.+||.+..++.+.+ ||||||||++||||+
T Consensus 102 ~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral 144 (235)
T cd03299 102 D---KKE-----------------------------IERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARAL 144 (235)
T ss_pred C---HHH-----------------------------HHHHHHHHHHHcCChhHHhcCccc-----CCHHHHHHHHHHHHH
Confidence 0 000 011246688889998888888766 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+.+|++++|||||+|||+.++.++.+.|++++...+.|++++.|+ ..++.+.+|++++|++|++++.|++++.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999876446777776655 4577889999999999999999987654
No 474
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.3e-31 Score=294.22 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++. +++..|+++|+.|......
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 47999999999999999999999987 999999998875432 2456899999874 6788899999988643211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. . .++ .+.+++++++.+|+.+..++.+++ ||||||||++||
T Consensus 114 ~--~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la 154 (269)
T PRK13648 114 V--P---YDE-----------------------------MHRRVSEALKQVDMLERADYEPNA-----LSGGQKQRVAIA 154 (269)
T ss_pred C--C---HHH-----------------------------HHHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHH
Confidence 0 0 000 011246788899998877777655 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||++.+|+++||||||+|||+.++..+.+.|+++.+..+.|++++.|++ .++.. +|+|++|++|++++.|+++++
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999998754467777766654 45654 999999999999999988765
No 475
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.1e-31 Score=297.27 Aligned_cols=190 Identities=23% Similarity=0.325 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||+||+.++....+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 47999999999999999999999987 999999999876432 2456899999863 6777899999988653221
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. .++ .+.+++++++.+||.+..++.+++ |||||||||+||
T Consensus 112 ~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~la 152 (279)
T PRK13635 112 VP-----REE-----------------------------MVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIA 152 (279)
T ss_pred CC-----HHH-----------------------------HHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHH
Confidence 00 000 012357788899999888888766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||+.+|+||||||||+|||+.++..+.+.|++++...+.|++++.|++ .++. .||+|++|++|++++.|+.+++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999998765567777766654 4555 59999999999999999877654
No 476
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.97 E-value=2.3e-31 Score=339.46 Aligned_cols=192 Identities=24% Similarity=0.363 Sum_probs=153.3
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 2 TLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 2 ~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
++|+||||||||||+++|+|+++|+ +|+|.+||.++.+.. .++.++||+|++.+|. .|++|||.++.+.
T Consensus 503 vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~~---- 574 (708)
T TIGR01193 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAKE---- 574 (708)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCCC----
Confidence 7999999999999999999999997 999999999886554 3568999999887765 6999999875210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
....++ ..+++...+.. +.+ ..++++.||.||+ .+.+||||||||++||||
T Consensus 575 --~~~~~~------------------i~~a~~~a~l~------~~i--~~lp~gldt~i~e-~G~~LSgGQrQRialARa 625 (708)
T TIGR01193 575 --NVSQDE------------------IWAACEIAEIK------DDI--ENMPLGYQTELSE-EGSSISGGQKQRIALARA 625 (708)
T ss_pred --CCCHHH------------------HHHHHHHhCCH------HHH--HhcccccCcEecC-CCCCCCHHHHHHHHHHHH
Confidence 011112 22222222221 111 2388899999997 456799999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
++++|+||+||||||+||+.++..+.+.|+++ .++|+|+..|.+ +..+.+|+|++|++|++++.|+++++.+
T Consensus 626 ll~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 626 LLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999874 367777766655 4678899999999999999999988754
No 477
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.3e-31 Score=293.19 Aligned_cols=205 Identities=21% Similarity=0.268 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 47899999999999999999999987 9999999988754321 2347899999999999999999998643110
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
.. ....... +. +..+. ...+....++++++.+||.+..++.+++ ||||||||++||
T Consensus 110 ~~---~~~~~~~------~~-~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la 165 (255)
T PRK11300 110 KT---GLFSGLL------KT-PAFRR---------AESEALDRAATWLERVGLLEHANRQAGN-----LAYGQQRRLEIA 165 (255)
T ss_pred cc---hhhhhhc------cc-ccccc---------chhHHHHHHHHHHHhCChhhhhhCChhh-----CCHHHHHHHHHH
Confidence 00 0000000 00 00000 0000112346778889998877887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.++|++. |...++.+.||++++|++|++++.|+.+++
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s-H~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE-HDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe-CCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 9999999999999999999999999999999998764466666654 556688899999999999999999987664
No 478
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-31 Score=293.00 Aligned_cols=190 Identities=27% Similarity=0.416 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.......
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 47899999999999999999999886 999999998765432 234689999998887889999999885421100
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
. .. +.+..++++++.+||.+..++.+++ |||||||||+||+
T Consensus 107 --~---~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGe~qrv~la~ 147 (258)
T PRK13548 107 --S---RA-----------------------------EDDALVAAALAQVDLAHLAGRDYPQ-----LSGGEQQRVQLAR 147 (258)
T ss_pred --C---cH-----------------------------HHHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHH
Confidence 0 00 0011246788889998877888776 9999999999999
Q ss_pred HHh------cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 158 LIV------GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 158 al~------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+ .+|++|+|||||+|||+.++..+.+.|+++.+..+.+++++. |...++...||+|++|++|+++..|+.+
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL-HDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 599999999999999999999999999998744566666655 5566788899999999999999999876
Q ss_pred hH
Q 000853 232 YI 233 (1252)
Q Consensus 232 ~~ 233 (1252)
++
T Consensus 227 ~~ 228 (258)
T PRK13548 227 EV 228 (258)
T ss_pred HH
Confidence 54
No 479
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-31 Score=300.41 Aligned_cols=190 Identities=21% Similarity=0.342 Sum_probs=152.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCC---------------------------ccccceEEEec
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE---------------------------FVPQKTSAYIS 53 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~---------------------------~~~~~~~~yv~ 53 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ...++.++||+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 47999999999999999999999987 8999999865421 11245689999
Q ss_pred ccc-ccCCCCCHHHHHHHHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-c
Q 000853 54 QYD-LHIAEMTVRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-I 131 (1252)
Q Consensus 54 Q~~-~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~ 131 (1252)
|++ ..+...||+|||.|+....+.. .++ .+.+++++++.+||+ +
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVS-----KEE-----------------------------AKKRAAKYIELVGLDES 157 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCC-----HHH-----------------------------HHHHHHHHHHHcCCChh
Confidence 975 3445679999999875432110 000 012357788999996 5
Q ss_pred cccccccCCcccccCccccchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHh
Q 000853 132 CADTIVGDPMRRGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFD 211 (1252)
Q Consensus 132 ~~~t~vg~~~~rgLSGGqkqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~ 211 (1252)
..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+++ ++|...++.+
T Consensus 158 ~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiii-vtHd~~~~~~ 230 (305)
T PRK13651 158 YLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIIL-VTHDLDNVLE 230 (305)
T ss_pred hhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeeCHHHHHH
Confidence 67777765 999999999999999999999999999999999999999999999874 4666555 4566678889
Q ss_pred hcccEEEEcCCcEEEeCCcchHH
Q 000853 212 LFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 212 ~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
.||+|++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999987753
No 480
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.9e-31 Score=298.40 Aligned_cols=191 Identities=26% Similarity=0.340 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCC--c---cccceEEEeccccc-cCCCCCHHHHHHHHHhc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDE--F---VPQKTSAYISQYDL-HIAEMTVRETIDFSARC 74 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~--~---~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~ 74 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++. .+...||+||+.++...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 47999999999999999999999987 9999999988741 1 12456999999863 34568999999886432
Q ss_pred cCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhH
Q 000853 75 QGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLT 154 (1252)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvs 154 (1252)
.+.. ..+ .+.+++++++.+||.+..++.+++ ||||||||++
T Consensus 111 ~~~~-----~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~ 151 (283)
T PRK13636 111 LKLP-----EDE-----------------------------VRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVA 151 (283)
T ss_pred cCCC-----HHH-----------------------------HHHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHHH
Confidence 1100 000 012357788999999888887766 9999999999
Q ss_pred HHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 155 TGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 155 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||||+.+|+||+|||||+|||+.++..+.+.|+++++..+.|++++ +|...++...||++++|++|++++.|+.+++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv-sH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-THDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999876546676665 45566777899999999999999999987764
No 481
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=6.7e-31 Score=288.27 Aligned_cols=183 Identities=26% Similarity=0.364 Sum_probs=149.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc-------cceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP-------QKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 47999999999999999999999887 9999999988754322 2468999999888899999999987643
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchh
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRL 153 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRv 153 (1252)
.+.. .. .+ .+.+++++++.+||.+..++.+++ ||||||||+
T Consensus 115 ~~~~----~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrl 155 (228)
T PRK10584 115 LRGE----SS-RQ-----------------------------SRNGAKALLEQLGLGKRLDHLPAQ-----LSGGEQQRV 155 (228)
T ss_pred hcCC----CH-HH-----------------------------HHHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHH
Confidence 2110 00 00 012346788899998877877766 999999999
Q ss_pred HHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEe
Q 000853 154 TTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYH 227 (1252)
Q Consensus 154 siA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~ 227 (1252)
+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.+++++.|++. ++ ..+|++++|++|++++.
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999987655677777666654 55 55999999999998653
No 482
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=8.9e-31 Score=286.12 Aligned_cols=182 Identities=24% Similarity=0.349 Sum_probs=151.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccCCCCCHHHHHHHHHhccCCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGHR 80 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++..|++||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~--- 100 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGL--- 100 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCC---
Confidence 37899999999999999999999887 999999998765322 24689999998888889999999876532210
Q ss_pred CchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHHh
Q 000853 81 ADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELIV 160 (1252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al~ 160 (1252)
. +.+++++++.+||.+..++.+++ ||||||||++||||++
T Consensus 101 -~----------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~ 140 (223)
T TIGR03740 101 -P----------------------------------DSRIDEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALL 140 (223)
T ss_pred -C----------------------------------HHHHHHHHHHcCCcHHHhhhHhh-----CCHHHHHHHHHHHHHh
Confidence 0 01235678889998877777765 9999999999999999
Q ss_pred cCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 161 GPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 161 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
.+|++++|||||+|||+.++..+.+.|+++.+ .+.+++++.| ...++...+|++++|++|++++.|+..
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH-~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSH-ILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcC-CHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999864 4667666555 455788899999999999999999754
No 483
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.5e-31 Score=281.12 Aligned_cols=166 Identities=39% Similarity=0.739 Sum_probs=139.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEeccccccCCCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYISQYDLHIAEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|....+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--- 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---
Confidence 4799999999999999999999983112399999999987543 23457899999999999999999998753210
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
.++.+ ..||||||||++||+|
T Consensus 112 ------------------------------------------------------~~~~~-----~~LS~Ge~qrl~lara 132 (202)
T cd03233 112 ------------------------------------------------------GNEFV-----RGISGGERKRVSIAEA 132 (202)
T ss_pred ------------------------------------------------------cccch-----hhCCHHHHHHHHHHHH
Confidence 12222 3399999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
|+.+|+++||||||+|||+.++..+.+.++++.+..+.++++++||+..++.+.+|++++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999876546777888888888999999999999999998765
No 484
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.5e-31 Score=295.91 Aligned_cols=191 Identities=27% Similarity=0.363 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+...||+||+.+......
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 37899999999999999999999987 999999998875422 2356899999863 3446899999987653211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. + .++ .+.+++++++.+||.+..++.+++ ||||||||++||
T Consensus 109 ~----~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~la 149 (277)
T PRK13652 109 L----D-EET-----------------------------VAHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAIA 149 (277)
T ss_pred C----C-HHH-----------------------------HHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHHH
Confidence 0 0 000 012346788999998888888765 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|||+.+|++|||||||+|||+.++..+.+.++++.+..+.|++++. |...++.+.||++++|++|++++.|+++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t-H~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST-HQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999999999999999999999998764466666654 5556888899999999999999999987763
No 485
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=5.1e-30 Score=265.44 Aligned_cols=205 Identities=24% Similarity=0.321 Sum_probs=176.2
Q ss_pred ccccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCCeEEEEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000853 674 QKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 674 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~~t 753 (1252)
.....+|+||||++++||.+||+|+||||||||+|+|+|.++ |++|+|.++|.-... ..=.--+.|.+|
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt~G~v~v~G~v~~l---------i~lg~Gf~pelT 105 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PTSGKVKVTGKVAPL---------IELGAGFDPELT 105 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CCCceEEEcceEehh---------hhcccCCCcccc
Confidence 345679999999999999999999999999999999999988 569999999964211 111123457899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
.+||+.+-+.+. ..+.++.+++++++++.-+|.+..|.. ++++|-||+-||++|.|.-.+|+||++||-.+-
T Consensus 106 GreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~P-----vktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 106 GRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQP-----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred hHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCc-----hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 999999988765 456788889999999999999998876 479999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHHhcceeeeecCcEEEEecCCCCcchhHHHHHhhC
Q 000853 834 LDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGPLGQHSCKVIDYFESI 903 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~ 903 (1252)
-|+.=++.-.+.++++.++++|||++||+++ .+-+.||+.++|.+ |++.+.|.+ +++.++++..
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~-G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH-GQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC-CEEEEcCCH----HHHHHHHHHh
Confidence 9999999999999999878899999999986 58889999999975 999999998 4556666553
No 486
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.8e-31 Score=290.45 Aligned_cols=187 Identities=23% Similarity=0.383 Sum_probs=150.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc----ccceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV----PQKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++..||+||+.++....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 108 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA- 108 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-
Confidence 47899999999999999999999987 999999998875432 2356999999988899899999998754211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHh-CCcccccccccCCcccccCccccchhHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKIL-GLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
. ..+. +..++++++.+ ++.+..++.+++ ||||||||++|
T Consensus 109 ---~---~~~~-----------------------------~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrl~l 148 (237)
T PRK11614 109 ---E---RDQF-----------------------------QERIKWVYELFPRLHERRIQRAGT-----MSGGEQQMLAI 148 (237)
T ss_pred ---C---hhHH-----------------------------HHHHHHHHHHHHHHHHHHhCchhh-----CCHHHHHHHHH
Confidence 0 0000 01123455555 365555565554 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||||+.+|+|++|||||+|||+.++..+.+.|+++++ .+.|+|++. |...++.+.||++++|++|++++.|+++++
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVE-QNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999865 467776654 556688899999999999999999987765
No 487
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=6.7e-31 Score=291.09 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=154.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccc----cceEEEeccccccCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP----QKTSAYISQYDLHIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+......
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 47899999999999999999999887 9999999987754321 3459999999999999999999988643110
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. ..... .. .. ..+.+.+++++++.+|+.+..++.+++ |||||||||+||
T Consensus 107 -~-~~~~~------------~~-~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrv~la 155 (242)
T TIGR03411 107 -S-VFASL------------FF-RL-----------SAEEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIG 155 (242)
T ss_pred -c-ccccc------------cc-cc-----------HHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHH
Confidence 0 00000 00 00 000112357788999998877887766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
||++.+|++|+|||||+|||+.++..+.+.|+++.+ +.++|++. |...++.+.||+|++|++|++++.|+.+++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~s-H~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVE-HDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEE-CCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999999864 45666554 556678889999999999999999987654
No 488
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.97 E-value=3.1e-31 Score=336.38 Aligned_cols=191 Identities=23% Similarity=0.353 Sum_probs=150.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
.++|+||||||||||+++|+|+++|+ +|+|.+||.++++.. .++.++||+|++.+|. .|++|||.++..
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~---- 580 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLT---- 580 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCC----
Confidence 37999999999999999999999997 999999999987654 3567999999877664 799999987531
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
....++ ..+++...+.+ +.++ .++++.||.+|+ .+..||||||||++|||
T Consensus 581 ---~~~~e~------------------i~~al~~a~l~------~~i~--~lp~GldT~ige-~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 581 ---DTPDEE------------------IMAAAKAANAH------DFIM--EFPNGYDTEVGE-KGSQLSGGQKQRIAIAR 630 (711)
T ss_pred ---CCCHHH------------------HHHHHHHcCCH------HHHH--hCCCccCCcccC-CCCcCCHHHHHHHHHHH
Confidence 001111 12222222221 1111 378889999997 35669999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHHH
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICK 235 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1252)
|++++|+||+||||||+||+.++..+.+ .. ...++|+|+..|++ +..+.+|+|++|++|++++.|+++++.+
T Consensus 631 ALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999999999999988 22 12467777766655 4678899999999999999999998764
No 489
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=8.2e-31 Score=291.89 Aligned_cols=191 Identities=21% Similarity=0.293 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc----------------cccceEEEeccccccCCCCCH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF----------------VPQKTSAYISQYDLHIAEMTV 64 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTV 64 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 47899999999999999999999987 99999999877432 124568999999889999999
Q ss_pred HHHHHHHHhccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccc
Q 000853 65 RETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRG 144 (1252)
Q Consensus 65 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rg 144 (1252)
+||+.++..... +.. .. +.+..++++++.+|+.+..+..+.+
T Consensus 105 ~~nl~~~~~~~~-~~~---~~-----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 146 (252)
T TIGR03005 105 LDNVTEAPVLVL-GMA---RA-----------------------------EAEKRAMELLDMVGLADKADHMPAQ----- 146 (252)
T ss_pred HHHHHHHHHHhc-CCC---HH-----------------------------HHHHHHHHHHHHcCChhHhhcChhh-----
Confidence 999987532100 000 00 0012346788889998777776655
Q ss_pred cCccccchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcE
Q 000853 145 VSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKI 224 (1252)
Q Consensus 145 LSGGqkqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i 224 (1252)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+..+.+++++.| ...++.+.+|++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH-~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH-EMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC-CHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644666666554 55678889999999999999
Q ss_pred EEeCCcchH
Q 000853 225 VYHGPRSYI 233 (1252)
Q Consensus 225 ~~~G~~~~~ 233 (1252)
++.|+.+++
T Consensus 226 ~~~g~~~~~ 234 (252)
T TIGR03005 226 VEQGKPDEI 234 (252)
T ss_pred EEeCCHHHH
Confidence 999987665
No 490
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=7.8e-31 Score=291.15 Aligned_cols=191 Identities=25% Similarity=0.356 Sum_probs=151.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeEEEEECCccCCCc-----cccceEEEeccccccCCCCCHHHHHHHHHh
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHS--LKVSGEVSYNGYRLDEF-----VPQKTSAYISQYDLHIAEMTVRETIDFSAR 73 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~--~~~~G~V~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1252)
+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++.+++ .||+||+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~ 107 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPR 107 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHH
Confidence 47899999999999999999999863 12289999999987532 12456999999988888 999999998654
Q ss_pred ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc----ccccccccCCcccccCccc
Q 000853 74 CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD----ICADTIVGDPMRRGVSGGQ 149 (1252)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~rgLSGGq 149 (1252)
.++.. . ..+ .+.+++.+++.+||. +..++.+++ |||||
T Consensus 108 ~~~~~---~-~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----LSgG~ 149 (247)
T TIGR00972 108 LHGIK---D-KKE-----------------------------LDEIVEESLKKAALWDEVKDRLHDSALG-----LSGGQ 149 (247)
T ss_pred hcCCC---C-HHH-----------------------------HHHHHHHHHHHcCCCcchhhHhhCCccc-----CCHHH
Confidence 32100 0 000 011246678888987 556666655 99999
Q ss_pred cchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCC
Q 000853 150 KKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGP 229 (1252)
Q Consensus 150 kqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1252)
|||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.+++++ +|...++...+|++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIV-THNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEE-ecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999865 3555554 455668889999999999999999998
Q ss_pred cchH
Q 000853 230 RSYI 233 (1252)
Q Consensus 230 ~~~~ 233 (1252)
++++
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 7665
No 491
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=8.7e-31 Score=292.41 Aligned_cols=189 Identities=20% Similarity=0.271 Sum_probs=152.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc----------------cccceEEEeccccccCCCCCH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF----------------VPQKTSAYISQYDLHIAEMTV 64 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTV 64 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 47899999999999999999999886 89999999876421 124568999999999999999
Q ss_pred HHHHHHHHh-ccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccc-cccccCCcc
Q 000853 65 RETIDFSAR-CQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICA-DTIVGDPMR 142 (1252)
Q Consensus 65 ~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~vg~~~~ 142 (1252)
+||+.++.. .... .. . +.+.+++++++.+||++.. ++.+++
T Consensus 110 ~enl~~~~~~~~~~----~~-~-----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~~--- 152 (257)
T PRK10619 110 LENVMEAPIQVLGL----SK-Q-----------------------------EARERAVKYLAKVGIDERAQGKYPVH--- 152 (257)
T ss_pred HHHHHHHHHHhCCC----CH-H-----------------------------HHHHHHHHHHHHcCCChhhhhCCccc---
Confidence 999987542 1100 00 0 0012346788899998753 665544
Q ss_pred cccCccccchhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCC
Q 000853 143 RGVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEG 222 (1252)
Q Consensus 143 rgLSGGqkqRvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G 222 (1252)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.+++++. |...++...||+|++|++|
T Consensus 153 --LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivs-H~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 153 --LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999865 466666654 5556777899999999999
Q ss_pred cEEEeCCcchH
Q 000853 223 KIVYHGPRSYI 233 (1252)
Q Consensus 223 ~i~~~G~~~~~ 233 (1252)
++++.|+++++
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999987665
No 492
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=6.5e-31 Score=285.17 Aligned_cols=185 Identities=27% Similarity=0.414 Sum_probs=144.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCccccceEEEeccccccC--CCCCHHHHHHHHHhccCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQYDLHI--AEMTVRETIDFSARCQGTG 78 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~~~~~~~yv~Q~~~~~--~~lTV~e~l~f~~~~~~~~ 78 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+. ..+||+||+.+...... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~-~ 100 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHK-G 100 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCcHHHHHHhcccccc-c
Confidence 47999999999999999999999887 9999999987642 345689999987653 34799999987542110 0
Q ss_pred CCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHH
Q 000853 79 HRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~a 158 (1252)
......+ +.+.+++++++.+|+++..++.+++ ||||||||++||||
T Consensus 101 -~~~~~~~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 146 (213)
T cd03235 101 -LFRRLSK----------------------------ADKAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARA 146 (213)
T ss_pred -cccCCCH----------------------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHH
Confidence 0000000 0012346788899998777887766 99999999999999
Q ss_pred HhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 159 l~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.++|++. |...++.+.+|++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~s-H~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVT-HDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999875 566666654 5556788899999999886 55544
No 493
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=5.5e-31 Score=285.48 Aligned_cols=179 Identities=28% Similarity=0.408 Sum_probs=144.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccc-cCCCCCHHHHHHHHHhccC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDL-HIAEMTVRETIDFSARCQG 76 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+||+||+.+......
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 47999999999999999999999887 999999998775432 2356899999864 4667899999987643211
Q ss_pred CCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHH
Q 000853 77 TGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. .. .+ .+.+++++++.+||++..++.+++ |||||||||+||
T Consensus 106 ~----~~-~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la 146 (211)
T cd03225 106 L----PE-EE-----------------------------IEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIA 146 (211)
T ss_pred C----CH-HH-----------------------------HHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHH
Confidence 0 00 00 011246788889998777777766 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCc
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGK 223 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~ 223 (1252)
|||+.+|++++|||||+|||+.++.++.+.|+++++. +.+++++. |...++...||+|++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~s-H~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVT-HDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEe-CCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999998753 66666655 45568888899999999985
No 494
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=1.1e-30 Score=292.65 Aligned_cols=192 Identities=25% Similarity=0.329 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc------ccceEEEecccc--ccCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV------PQKTSAYISQYD--LHIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 47899999999999999999999987 999999998875432 235699999986 4667899999998754
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
..... .. .. +.+.+++++++.+||. +..+..+++ |||||||
T Consensus 116 ~~~~~---~~--~~----------------------------~~~~~~~~~l~~~gl~~~~~~~~~~~-----LSgGe~q 157 (265)
T TIGR02769 116 RHLTS---LD--ES----------------------------EQKARIAELLDMVGLRSEDADKLPRQ-----LSGGQLQ 157 (265)
T ss_pred HHhcC---CC--HH----------------------------HHHHHHHHHHHHcCCChhhhhCChhh-----CCHHHHH
Confidence 21100 00 00 0012346788899996 566776655 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|++++. |....+...+|++++|++|++++.|+++
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFIT-HDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-CCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999998764466766654 5566777899999999999999999887
Q ss_pred hHH
Q 000853 232 YIC 234 (1252)
Q Consensus 232 ~~~ 234 (1252)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 653
No 495
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7e-31 Score=296.96 Aligned_cols=190 Identities=25% Similarity=0.392 Sum_probs=152.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc-------cccceEEEeccccc-cCCCCCHHHHHHHHH
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF-------VPQKTSAYISQYDL-HIAEMTVRETIDFSA 72 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~ 72 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+..+||+||+.|+.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 47999999999999999999999987 99999999887432 12356899999862 333689999998865
Q ss_pred hccCCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccc
Q 000853 73 RCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKK 151 (1252)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkq 151 (1252)
..... ..++ .+.+++++++.+||. +..++.+++ |||||||
T Consensus 112 ~~~~~-----~~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~q 152 (287)
T PRK13641 112 KNFGF-----SEDE-----------------------------AKEKALKWLKKVGLSEDLISKSPFE-----LSGGQMR 152 (287)
T ss_pred HHcCC-----CHHH-----------------------------HHHHHHHHHHHcCCChhHhhCCccc-----CCHHHHH
Confidence 32110 0000 012346788999997 567887766 9999999
Q ss_pred hhHHHHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcc
Q 000853 152 RLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRS 231 (1252)
Q Consensus 152 RvsiA~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1252)
||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ .+.|+++ ++|...++.+.||++++|++|++++.|+++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvli-vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVIL-VTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 4566655 556677888999999999999999999877
Q ss_pred hHH
Q 000853 232 YIC 234 (1252)
Q Consensus 232 ~~~ 234 (1252)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13641 231 EIF 233 (287)
T ss_pred HHh
Confidence 653
No 496
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.5e-31 Score=289.32 Aligned_cols=185 Identities=20% Similarity=0.347 Sum_probs=150.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc---ccceEEEeccccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV---PQKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .||+||+.+......
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~- 105 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG- 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-
Confidence 47899999999999999999999887 999999998865322 2456899999887776 699999986432110
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCc-ccccccccCCcccccCccccchhHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKKRLTTG 156 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~rgLSGGqkqRvsiA 156 (1252)
. . +.+++++++.+||+ +..++.+++ ||||||||++||
T Consensus 106 ----~---~------------------------------~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~qrl~la 143 (241)
T PRK14250 106 ----E---K------------------------------NVDVEYYLSIVGLNKEYATRDVKN-----LSGGEAQRVSIA 143 (241)
T ss_pred ----c---H------------------------------HHHHHHHHHHcCCCHHHhhCCccc-----CCHHHHHHHHHH
Confidence 0 0 01235678888996 455666554 999999999999
Q ss_pred HHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 157 ELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 157 ~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+|++.+|++|||||||+|||+.++..+.+.|+++.+..+.+++++ +|...++.+.||+|++|++|+++..|++.++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI-THNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE-eccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999876446676665 4556678889999999999999999987665
No 497
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=1.1e-30 Score=287.40 Aligned_cols=185 Identities=25% Similarity=0.292 Sum_probs=149.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc--cccceEEEec-cccccCCCCCHHHHHHHHHhccCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF--VPQKTSAYIS-QYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~--~~~~~~~yv~-Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+++.+||+||+.+.....+.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 99999999875321 2245689997 556778889999999886543211
Q ss_pred CCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHH
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~ 157 (1252)
. ..+ ...+++++++.+||++..++.+++ ||||||||++||+
T Consensus 126 ~-----~~~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~ 166 (236)
T cd03267 126 P-----PAR-----------------------------FKKRLDELSELLDLEELLDTPVRQ-----LSLGQRMRAEIAA 166 (236)
T ss_pred C-----HHH-----------------------------HHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHH
Confidence 0 000 011246678889999888888866 9999999999999
Q ss_pred HHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeC
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHG 228 (1252)
Q Consensus 158 al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1252)
||+.+|++++|||||+|||+.++.++.+.|+++++..+.+++++. |...++...+|++++|++|++++.|
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs-H~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS-HYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe-cCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998765566766655 4455788899999999999998765
No 498
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.9e-31 Score=247.08 Aligned_cols=180 Identities=26% Similarity=0.333 Sum_probs=154.7
Q ss_pred ccccccceeEEEeCCeEEEEecCCCCChHHHHHHHhcCCCCC-eEEEEEEECCeeCCc-ccccceEEEEccCCCCCCCCC
Q 000853 676 KLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG-IIEGDIRIGGYPKVQ-HTFARISGYCEQNDIHSPNIT 753 (1252)
Q Consensus 676 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~~t 753 (1252)
...+|-|+|++|.+||++-||||||||||||+..+.|.+.+. ..+|++++|+++++. ...+|++|+.+||+.++|.++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 457899999999999999999999999999999999977643 468999999998654 345678999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000853 754 VEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 833 (1252)
Q Consensus 754 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~~~~~lSgGqrqrv~ia~al~~~p~illlDEPTsg 833 (1252)
|.+|+.|+. +.....+.++..++..+++.||.+..+.- +..||||||-||++-|+|+..|+.++||||.|.
T Consensus 94 Vg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~ 164 (213)
T COG4136 94 VGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSR 164 (213)
T ss_pred cccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence 999999864 23333445667789999999999887654 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH-HHHCCCEEEEEecCCC
Q 000853 834 LDARAAAIVMRAVKN-VVETGRTVVCTIHQPS 864 (1252)
Q Consensus 834 LD~~~~~~i~~~l~~-~~~~g~tvi~~~H~~~ 864 (1252)
||..-+.++.+..-. ....|.-+|.+|||..
T Consensus 165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999987655 4455999999999853
No 499
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.4e-30 Score=286.08 Aligned_cols=190 Identities=26% Similarity=0.347 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCcc-ccceEEEeccccccCCCCCHHHHHHHHHhccCCCC
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFV-PQKTSAYISQYDLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|++||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~-- 102 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKL-- 102 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCC--
Confidence 47999999999999999999999986 899999998875432 245789999998888889999999886543210
Q ss_pred CCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHHHHHH
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGELI 159 (1252)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsiA~al 159 (1252)
. ... .+..++.+++.+||.+..++.+.+ ||||||||++|||||
T Consensus 103 ~---~~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrl~laral 145 (232)
T cd03300 103 P---KAE-----------------------------IKERVAEALDLVQLEGYANRKPSQ-----LSGGQQQRVAIARAL 145 (232)
T ss_pred C---HHH-----------------------------HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 0 000 011346788889998878877755 999999999999999
Q ss_pred hcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchH
Q 000853 160 VGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYI 233 (1252)
Q Consensus 160 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1252)
+.+|++++|||||+|||+.++.++.+.++++....+.|++++.|++ .++.+.+|++++|++|++++.|+..+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999998764467777766554 577889999999999999999976654
No 500
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=294.60 Aligned_cols=190 Identities=24% Similarity=0.314 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCccCCCc----cccceEEEeccccc-cCCCCCHHHHHHHHHhcc
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEF----VPQKTSAYISQYDL-HIAEMTVRETIDFSARCQ 75 (1252)
Q Consensus 1 ~~~i~G~~GsGKSTLl~~l~G~~~~~~~~~G~V~~~g~~~~~~----~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~ 75 (1252)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+...||.||+.|+....
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 47999999999999999999999987 99999999887542 12457899999863 334579999999875322
Q ss_pred CCCCCCchhHHHHHHHHhhCCCCCCchhHHHHHHhhhhhchhhhHHHHHHHhCCcccccccccCCcccccCccccchhHH
Q 000853 76 GTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTT 155 (1252)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~rgLSGGqkqRvsi 155 (1252)
+. . ..+ .+..++++++.+||++..++.+++ ||||||||++|
T Consensus 115 ~~--~---~~~-----------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~l 155 (280)
T PRK13633 115 GI--P---PEE-----------------------------IRERVDESLKKVGMYEYRRHAPHL-----LSGGQKQRVAI 155 (280)
T ss_pred CC--C---HHH-----------------------------HHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHH
Confidence 10 0 000 012357788999999888888876 99999999999
Q ss_pred HHHHhcCCcEeeeecCCcccChHHHHHHHHHHHHHhHhcCCEEEEEecCCChhHHhhcccEEEEcCCcEEEeCCcchHH
Q 000853 156 GELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYIC 234 (1252)
Q Consensus 156 A~al~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~~~~t~i~~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1252)
|++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|++++.|++. ++.. +|++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999987655777777665554 5555 9999999999999999988764
Done!