Query 000853
Match_columns 1252
No_of_seqs 279 out of 4756
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 15:51:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000853.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_624-627//hhsearch_pdb/000853hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 679.0 42.8 760 1-890 446-1300(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 606.4 48.3 758 1-889 418-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 452.7 32.0 424 1-892 119-561 (607)
4 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 447.0 31.2 216 651-903 269-486 (538)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 443.5 31.0 202 651-891 287-490 (538)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 440.2 29.5 412 1-888 463-981 (986)
7 3j16_B RLI1P; ribosome recycli 1.0 1 1 432.4 28.7 201 678-903 361-568 (608)
8 3ux8_A Excinuclease ABC, A sub 1.0 1 1 431.8 34.6 197 677-889 335-635 (670)
9 3pih_A Uvrabc system protein A 1.0 1 1 353.0 31.3 199 677-890 597-898 (916)
10 2vf7_A UVRA2, excinuclease ABC 1.0 1 1 333.2 27.9 195 679-889 512-822 (842)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=678.98 Aligned_cols=760 Identities=19% Similarity=0.228 Sum_probs=384.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989998326899998912787655---42388766544568889889999999761289
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~---~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~ 77 (1252)
.++|+||||||||||+++|.|+++|. +|+|.+||.|+++... |+.++||+|++ |+.+.||||||.|+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~-~Lf~~TI~eNI~~g~~---- 517 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEP-ALFNCTIEENISLGKE---- 517 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCCSEEHHHHHHTTCT----
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCC-EEECCCHHHHHHHHCC----
T ss_conf 78998058985778888754565164---486157996501125999850466658753-3207861678864155----
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98875047999999850889997246788887631100121299999992984435542258865446723221348999
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~ 157 (1252)
+.+.+++.+++..++++..+. .||+++||.||+. +..||||||||++|||
T Consensus 518 ---------------------~~~~~~v~~a~~~a~l~~~i~--------~lp~G~~T~vGe~-G~~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 518 ---------------------GITREEMVAACKMANAEKFIK--------TLPNGYNTLVGDR-GTQLSGGQKQRIAIAR 567 (1321)
T ss_dssp ---------------------TCCHHHHHHHHHHTTCHHHHH--------HSTTTTSSEESSS-SCCCCHHHHHHHHHHH
T ss_pred ---------------------CCHHHHHHHHHHHCCCHHHHH--------CCCCCCCCEECCC-CCCCCHHHHHHHHHHH
T ss_conf ---------------------220999999998756546887--------0888886075589-8877777879999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHHHH
Q ss_conf 88329817366269866385989999999999857269889999348982688300318997298088757810389987
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 158 aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~~f 237 (1252)
|++++|+|++||||||+||+.++..+.+.|+.+. .++|+++..|+. ++.+.+|+|++|++|+++++|+++++.+.
T Consensus 568 Al~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrl--s~i~~aD~Iivl~~G~ive~Gth~eL~~~- 642 (1321)
T 4f4c_A 568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRL--STIRNADLIISCKNGQVVEVGDHRALMAQ- 642 (1321)
T ss_dssp HHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCT--TTTTTCSEEEEEETTEEEEEECHHHHHTT-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCH--HHHHHCCEEEEEECCEEECCCCHHHHHHH-
T ss_conf 8725999899845544688789999999999984--798899973638--78986898999639965136899999985-
Q ss_pred HHCCCCCCCCCCHHHHHHHHCCCHHHHHHHCC---CCCCCC-------CC-----CHHHHHHHHHHCHHHHHHH-HHHHH
Q ss_conf 75699999999956799982390224443103---899998-------88-----9989999997583427799-99830
Q 000853 238 EDCGFRCPERKGVADFLQEVISRKDQEQYWHR---KDHPYG-------YV-----SIDQFITKFKTSHLGLKLE-EELAH 301 (1252)
Q Consensus 238 ~~~G~~~p~~~~~adf~~~~~~~~~~~~~~~~---~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~-~~~~~ 301 (1252)
.| ..++........+..+..... .+.... .. ..+........+....... .....
T Consensus 643 --~g-------~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1321)
T 4f4c_A 643 --QG-------LYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDE 713 (1321)
T ss_dssp --TC-------HHHHHHHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred --HH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHH
T ss_conf --32-------799999962212222332334433223211122222342222222110221110132124567740257
Q ss_pred CCCCCCCCC-----CCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---EE----CCC--C
Q ss_conf 018872110-----001-24665561899999999899998204836899999999999987542---00----134--6
Q 000853 302 SFNKSETHK-----KAL-SFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMT---AF----LRS--Q 366 (1252)
Q Consensus 302 ~~~~~~~~~-----~~~-~~~~~~~s~~~q~~~~~~r~~~~~~r~~~~~~~~~~~~~~~a~~~g~---~f----~~~--~ 366 (1252)
......... ... .......+.+..+ ... +..+...+.......++..+.. .+ ... .
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 784 (1321)
T 4f4c_A 714 KEERIGKDALSRLKQELEENNAQKTNLFEIL--------YHA-RPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAG 784 (1321)
T ss_dssp --CCCCCCHHHHHHHTTTTSCCCCCCHHHHH--------HHT-GGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCEEHHHHH--------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7753154038999999997078631099999--------998-7789999999999999999999999999999987517
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 783647687798899999999--999548888976432257755303998680348998897852199998999987765
Q 000853 367 LAVDVLHANAYLGALFYALMI--LIVNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTY 444 (1252)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y 444 (1252)
.+.+......+....+..+.. .+...+...... ........++...++..++...+.|
T Consensus 785 ~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~--------------------~~~~~~~~~lr~~l~~~il~~~~~f 844 (1321)
T 4f4c_A 785 NPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMG--------------------IASESLTRDLRNKLFRNVLSQHIGF 844 (1321)
T ss_dssp CSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHTSCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 93455667899999999999999999999999999--------------------9999999999999988873499333
Q ss_pred HCCCCCCCHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 32587664778999999--------------9999999999999999881289788999999999999885032017999
Q 000853 445 YVIGYSPEVGRFFRQFL--------------LLFTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKS 510 (1252)
Q Consensus 445 ~l~~l~~~~~~f~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~l~~g~~i~~~~ 510 (1252)
|-... ...++....+. ..+....... +...+.....+..++.++.. ..+++.+..++.....
T Consensus 845 fd~~~-~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~-i~~~~~~~~~~~~l~lv~l~--~~~~~~~~~~~~~~~~ 920 (1321)
T 4f4c_A 845 FDSPQ-NASGKISTRLATDVPNLRTAIDFRFSTVITTLVSM-VAGIGLAFFYGWQMALLIIA--ILPIVAFGQYLRGRRF 920 (1321)
T ss_dssp TTSGG-GCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHTSCC
T ss_pred HCCCC-CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHEEEEHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf 21678-88488885025059999999999999999986537-77702213786899999999--8889999999999999
Q ss_pred CCCCCHHHH----HHCHHHHHHHHHHHHHCCCCCCCCC--CCC-CCCCCCHHHHCCCCCCCCCCHHHH-HHHHHHHHHHH
Q ss_conf 874201235----1379999999999873389943212--687-533210013125765687412678-99999999999
Q 000853 511 MPSWLKWGF----WVCPLTYGEIGLTVNEFLAPRWEKI--TSG-NTTVGRQTLESRGLNFDSSFYWIS-IAALIGFTVLF 582 (1252)
Q Consensus 511 ~~~~~~~~~----~i~~~~y~~~~l~~~e~~~~~~~~~--~~~-~~~~g~~~l~~~~~~~~~~~~~~~-~~~l~~~~v~~ 582 (1252)
.....+... ......-...++......+...... ... ............. .....++.. ....+...+.+
T Consensus 921 ~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 998 (1321)
T 4f4c_A 921 TGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAF--IQGLSYGCASSVLYLLNTCAY 998 (1321)
T ss_dssp SSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999988898899999962798886141488999999999999999999999--999999999999999999999
Q ss_pred HH----------------HHHHHHHHCCCCCCCCCC-----------CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99----------------999998713788886530-----------101000000124689999887765556888777
Q 000853 583 NV----------------VFTLALTFLKSPGKSRTI-----------IAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTT 635 (1252)
Q Consensus 583 ~~----------------~~~i~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1252)
.. .+.+.............. .+.++.....+..+.. +. .....+
T Consensus 999 ~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~-----~~----~~~~~~ 1069 (1321)
T 4f4c_A 999 RMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKI-----DS----LSLAGE 1069 (1321)
T ss_dssp HHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSS-----CT----TCCCSB
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CC----CCCCCC
T ss_conf 875788753765421478999999998778899999999999999999999899986076657-----77----667787
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89988886678888179999599999558520112555333322236057874873999945899886789988834978
Q 000853 636 AGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKT 715 (1252)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~ 715 (1252)
.++. .-.++|+|+++.|+.. +...+|+|+|+.++|||++||+|+||||||||+++|.|...
T Consensus 1070 ~~~~---------~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1070 KKKL---------YGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CCCC---------CCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCC---------CCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8888---------8818999879857999----------98821245169988989999989999819999999956863
Q ss_pred CCEEEEEEEECCEECCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC--
Q ss_conf 97079999999950783---4333358997369888999999999999987249999999899999999999829954--
Q 000853 716 GGIIEGDIRIGGYPKVQ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDG-- 790 (1252)
Q Consensus 716 ~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~-- 790 (1252)
+.+|+|.+||.+... +.+|+.++||||++.++. -|++||+.|.. .+.+.++ +.++++++..++.+
T Consensus 1131 --p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I 1200 (1321)
T 4f4c_A 1131 --TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTM----AQVEEAARLANIHNFI 1200 (1321)
T ss_dssp --CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHH
T ss_pred --CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCCH----HHHHHHHHHHCCHHHH
T ss_conf --899789999998654999999854599878997327-23999974549---9999999----9999999982984999
Q ss_pred -----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf -----222323489888779889999999999950996889939999999999999999999998779899999458988
Q 000853 791 -----IKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSI 865 (1252)
Q Consensus 791 -----~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~ 865 (1252)
--||.+|..+ ..+|||||||+||||||+++|+||+||||||+||+.|+..|++.|++..+ ++|+|+++|+++
T Consensus 1201 ~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHRLs- 1277 (1321)
T 4f4c_A 1201 AELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHRLN- 1277 (1321)
T ss_dssp HTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEEECSSSS-
T ss_pred HCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCHH-
T ss_conf 717678999823889-15699999999999999717998999681115789999999999999739-998999606899-
Q ss_pred HHHHHHCCEEEEECCCEEEEECCCC
Q ss_conf 9999720014664395899966998
Q 000853 866 DIFEAFDDLILMKNGGRIIYSGPLG 890 (1252)
Q Consensus 866 ~~~~~~d~i~~l~~gg~~~~~g~~~ 890 (1252)
....+|+|++|. +|+++++|++.
T Consensus 1278 -Ti~~aD~I~Vld-~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1278 -TVMNADCIAVVS-NGTIIEKGTHT 1300 (1321)
T ss_dssp -TTTTCSEEEEES-SSSEEEEECHH
T ss_pred -HHHHCCEEEEEE-CCEEEEECCHH
T ss_conf -999699999998-98999988889
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=606.38 Aligned_cols=758 Identities=18% Similarity=0.233 Sum_probs=363.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999857999996899989819989998326899998912787655---42388766544568889889999999761289
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVP---QKTSAYISQYDLHIAEMTVRETIDFSARCQGT 77 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~---~~~~~yv~Q~d~l~~~lTVrEnL~f~a~l~~~ 77 (1252)
.++|+||||||||||+++|.|+++|+ +|+|.++|.++..... ++.++||+|++.+++ .||+|||.|+..-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~~--- 490 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGRED--- 490 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCSS---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCC-CCHHHHHHCCCCC---
T ss_conf 89998999997999999980788999---7389999998775799999865489868875377-6699997457989---
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 98875047999999850889997246788887631100121299999992984435542258865446723221348999
Q 000853 78 GHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRRGVSGGQKKRLTTGE 157 (1252)
Q Consensus 78 ~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~gLSGGQKrRLsIA~ 157 (1252)
. +.++..+++..++.+ |. +..|+++.||.||+. +..||||||||++|||
T Consensus 491 -~---------------------~~~~~~~~~~~~~~~-----~~---i~~l~~g~~t~~~~~-g~~LSgGq~QriaiAR 539 (1284)
T 3g5u_A 491 -V---------------------TMDEIEKAVKEANAY-----DF---IMKLPHQFDTLVGER-GAQLSGGQKQRIAIAR 539 (1284)
T ss_dssp -C---------------------CHHHHHHHHHHTTCH-----HH---HHHSTTGGGCCCSSS-SCSSCHHHHHHHHHHH
T ss_pred -C---------------------CHHHHHHHHHHHCCH-----HH---HHHCCCCCCCCCCCC-CCCCCHHHHHHHHHHH
T ss_conf -9---------------------999999999982969-----99---974656334501478-7865999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHHHH
Q ss_conf 88329817366269866385989999999999857269889999348982688300318997298088757810389987
Q 000853 158 LIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIVYHGPRSYICKFF 237 (1252)
Q Consensus 158 aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv~~G~~~~~~~~f 237 (1252)
|++.+|+|++||||||+||+.++..+.+.++... .++|+++..| +.+....+|+|++|++|++++.|++.++.+.
T Consensus 540 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH--~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~- 614 (1284)
T 3g5u_A 540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAH--RLSTVRNADVIAGFDGGVIVEQGNHDELMRE- 614 (1284)
T ss_dssp HHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECS--CHHHHTTCSEEEECSSSCCCCEECHHHHHHT-
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEC--CHHHHHCCCEEEEEECCEEEEECCHHHHHHC-
T ss_conf 9952999899979877779999999999999973--9998999940--7789974998999989999997889999867-
Q ss_pred HHCCCCCCCCCCHHHHHHHHCCCHHHHHHH---CCCCCC-CCCCCHHHHHHHH-HHCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 756999999999567999823902244431---038999-9888998999999-75834277999983001887211000
Q 000853 238 EDCGFRCPERKGVADFLQEVISRKDQEQYW---HRKDHP-YGYVSIDQFITKF-KTSHLGLKLEEELAHSFNKSETHKKA 312 (1252)
Q Consensus 238 ~~~G~~~p~~~~~adf~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1252)
.|. ..+.........+.+... ...+.. ............. ............ . ...........
T Consensus 615 --~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 683 (1284)
T 3g5u_A 615 --KGI-------YFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGP-H-DQDRKLSTKEA 683 (1284)
T ss_dssp --TSH-------HHHHHHHTC-----------------------------------------------------------
T ss_pred --CCH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCHHHH
T ss_conf --877-------999999743002211133333322222344333333332000345433344564-2-23321102455
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHH---HEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 1246655618999999998999982048368999999999999-------8754---20013467836476877988999
Q 000853 313 LSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIA-------SITM---TAFLRSQLAVDVLHANAYLGALF 382 (1252)
Q Consensus 313 ~~~~~~~~s~~~q~~~~~~r~~~~~~r~~~~~~~~~~~~~~~a-------~~~g---~~f~~~~~~~~~~~~~~~~~~l~ 382 (1252)
........+.+..+.. .+..+..+....+..++.+ ..++ ..+.... .......... +
T Consensus 684 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~----~ 750 (1284)
T 3g5u_A 684 LDEDVPPASFWRILKL--------NSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG-PPETQRQNSN----L 750 (1284)
T ss_dssp CCCCCSCCCTTHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHH----H
T ss_pred HHCCCCCHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHH----H
T ss_conf 5313662589999998--------4515799999999999999999999999999999985568-5033677999----9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--
Q ss_conf 999999995488889764322577553039986803489988978521999989999877653258766477899999--
Q 000853 383 YALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQF-- 460 (1252)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~~l~~~~~~f~~~~-- 460 (1252)
+..++............... .. ..+.......++...++..++.....||-..- ...+.....+
T Consensus 751 ~~~~~~~l~i~~~~~~~~~~-~~------------~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~-~~~G~l~~rl~~ 816 (1284)
T 3g5u_A 751 FSLLFLILGIISFITFFLQG-FT------------FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPK-NTTGALTTRLAN 816 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC-CCHHHHHHHHHH
T ss_conf 99999999999999999999-99------------99999999999999999999839988875789-988999999999
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHH
Q ss_conf ------------99999999999999999881289788999999999999885032017999874201235137999999
Q 000853 461 ------------LLLFTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGE 528 (1252)
Q Consensus 461 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~l~~g~~i~~~~~~~~~~~~~~i~~~~y~~ 528 (1252)
+..+............+.....+. .+.++.. ..+++++.+++... +......-..-.+.-
T Consensus 817 D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~-l~lv~l~--~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 888 (1284)
T 3g5u_A 817 DAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ-LTLLLLA--IVPIIAIAGVVEMK-----MLSGQALKDKKELEG 888 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS-SHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999699-9999999--99999999999999-----999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCC-CCCCCHHHHCCCCCCCC---CCHHHHHHHHHH-H-H-HHHHHHHHHH------------
Q ss_conf 99998733899432126875-33210013125765687---412678999999-9-9-9999999999------------
Q 000853 529 IGLTVNEFLAPRWEKITSGN-TTVGRQTLESRGLNFDS---SFYWISIAALIG-F-T-VLFNVVFTLA------------ 589 (1252)
Q Consensus 529 ~~l~~~e~~~~~~~~~~~~~-~~~g~~~l~~~~~~~~~---~~~~~~~~~l~~-~-~-v~~~~~~~i~------------ 589 (1252)
..-...|.......-...+. ...-..+.+........ ...+......+. . . ..+.+.+.+.
T Consensus 889 ~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~ 968 (1284)
T 3g5u_A 889 SGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFE 968 (1284)
T ss_dssp HHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCST
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999988999998465999999999999999999999999999999999999999999999999999990980699
Q ss_pred ---------------H--HHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf ---------------8--71378888653010100000012468999988776555688877789988886678888179
Q 000853 590 ---------------L--TFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAGPKRGKMVLPFEPLTL 652 (1252)
Q Consensus 590 ---------------l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1252)
+ .....+...+...+.++.....+..+.. +.. ......+ +.....+
T Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~-----~~~-----~~~~~~~-------~~~~g~i 1031 (1284)
T 3g5u_A 969 NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI-----DSY-----STQGLKP-------NMLEGNV 1031 (1284)
T ss_dssp THHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSS-----SSC-----CSSCCCT-------TTTSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCC-----CCCCCCC-------CCCCCCE
T ss_conf 9999999999999999999999999999999999999998388766-----665-----5566545-------6777857
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCC
Q ss_conf 99959999955852011255533332223605787487399994589988678998883497897079999999950783
Q 000853 653 TFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQ 732 (1252)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 732 (1252)
+++|+++.++.. ....+|+|+|+.++|||++||+||||||||||+++|.|... +.+|+|.+||.+...
T Consensus 1032 ~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1032 QFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp EEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTS
T ss_pred EEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCC
T ss_conf 999989977999----------98700203059976998899988999978999999946867--899779899998000
Q ss_pred ---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCC
Q ss_conf ---4333358997369888999999999999987249999999899999999999829-------954222323489888
Q 000853 733 ---HTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIE-------LDGIKYSLVGLPGVS 802 (1252)
Q Consensus 733 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~ig~~~~~ 802 (1252)
..+++.++||+|++.++ ..|++|++.+.... ...+.++ +.+.++..+ +.+..|+.+|..+ .
T Consensus 1100 ~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~G-~ 1170 (1284)
T 3g5u_A 1100 LNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDKG-T 1170 (1284)
T ss_dssp SCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTTS-C
T ss_pred CCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCC-C
T ss_conf 78999970268987787406-66699997466877---8999999----99999983959999727042456117888-9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 77988999999999995099688993999999999999999999999877989999945898899997200146643958
Q 000853 803 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMKNGGR 882 (1252)
Q Consensus 803 ~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~~gg~ 882 (1252)
.||||||||++|||+|+++|+||+|||||+|||+.++..+++.|++.. .|+|+|+++|+++. + ..+|++++|. +|+
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~-~G~ 1246 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQ-NGK 1246 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEE-TBE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH-H-HCCCEEEEEE-CCE
T ss_conf 338999999999999974999999868755579999999999999867-99989999558799-9-8099899998-998
Q ss_pred EEEECCC
Q ss_conf 9996699
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 1247 i~~~g~~ 1253 (1284)
T 3g5u_A 1247 VKEHGTH 1253 (1284)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=452.72 Aligned_cols=424 Identities=21% Similarity=0.251 Sum_probs=297.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCCCCCCC-----CCCCEEEEECCCCCCCC---CCC
Q ss_conf 999857999996899989819989998326899---------9989127876-----55423887665445688---898
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEV---------SYNGYRLDEF-----VPQKTSAYISQYDLHIA---EMT 63 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V---------~inG~~~~~~-----~~~~~~~yv~Q~d~l~~---~lT 63 (1252)
+++|+||||||||||+++|+|.+.|+ +|++ .++|.+++.. ..+..++++.|.....+ ..|
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 195 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEEECHHHHCHHHCCCC
T ss_conf 99999999972999999985799878---785466630133136877613432345565344688632043130220050
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 89999999761289988750479999998508899972467888876311001212999999929844355422588654
Q 000853 64 VRETIDFSARCQGTGHRADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLDICADTIVGDPMRR 143 (1252)
Q Consensus 64 VrEnL~f~a~l~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~~~~~T~VG~~~~~ 143 (1252)
|+|++.... . ...++++++.+||.+..+..+++
T Consensus 196 v~e~l~~~~------~-------------------------------------~~~~~~~L~~lgL~~~~~~~~~~---- 228 (607)
T 3bk7_A 196 VRELLKKVD------E-------------------------------------VGKFEEVVKELELENVLDRELHQ---- 228 (607)
T ss_dssp HHHHHHHTC------C-------------------------------------SSCHHHHHHHTTCTTGGGSBGGG----
T ss_pred HHHHHHHHH------H-------------------------------------HHHHHHHHHHCCCCCHHCCCHHH----
T ss_conf 999963167------9-------------------------------------99999999975997043798056----
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCC
Q ss_conf 46723221348999883298173662698663859899999999998572698899993489826883003189972980
Q 000853 144 GVSGGQKKRLTTGELIVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGK 223 (1252)
Q Consensus 144 gLSGGQKrRLsIA~aL~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~ 223 (1252)
||||||||++||+||+.+|++|+||||||+||+.++.++++.|+.+.. .+.|++++. |....+...+|+|++|.++.
T Consensus 229 -LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivs-Hdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 229 -LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVE-HDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp -CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC-SCHHHHHHHCSEEEEEESCT
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEE-CCHHHHHHHCCEEEEECCCC
T ss_conf -999999999999998459999999797435899999999999999986-699899996-48589886589999977986
Q ss_pred EEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCC
Q ss_conf 88757810389987756999999999567999823902244431038999988899899999975834277999983001
Q 000853 224 IVYHGPRSYICKFFEDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSF 303 (1252)
Q Consensus 224 vv~~G~~~~~~~~f~~~G~~~p~~~~~adf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1252)
.. +|... .+ ....
T Consensus 306 ~~-~g~~~----------------------------------------~~---~~~~----------------------- 318 (607)
T 3bk7_A 306 GV-YGIFS----------------------------------------KP---KGTR----------------------- 318 (607)
T ss_dssp TT-EEEEC----------------------------------------CC---EEHH-----------------------
T ss_pred CC-CCEEC----------------------------------------CC---HHHH-----------------------
T ss_conf 44-52122----------------------------------------41---3279-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88721100012466556189999999989999820483689999999999998754200134678364768779889999
Q 000853 304 NKSETHKKALSFKKYSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFY 383 (1252)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~q~~~~~~r~~~~~~r~~~~~~~~~~~~~~~a~~~g~~f~~~~~~~~~~~~~~~~~~l~~ 383 (1252)
... ..+
T Consensus 319 --------------------~~i------------------------------------------------~~~------ 324 (607)
T 3bk7_A 319 --------------------NGI------------------------------------------------NEF------ 324 (607)
T ss_dssp --------------------HHH------------------------------------------------HHH------
T ss_pred --------------------HHH------------------------------------------------HHH------
T ss_conf --------------------999------------------------------------------------999------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999995488889764322577553039986803489988978521999989999877653258766477899999999
Q 000853 384 ALMILIVNGFPELNMTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLL 463 (1252)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~~l~~~~~~f~~~~~~~ 463 (1252)
.
T Consensus 325 ------~------------------------------------------------------------------------- 325 (607)
T 3bk7_A 325 ------L------------------------------------------------------------------------- 325 (607)
T ss_dssp ------H-------------------------------------------------------------------------
T ss_pred ------H-------------------------------------------------------------------------
T ss_conf ------7-------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999881289788999999999999885032017999874201235137999999999987338994321
Q 000853 464 FTVHLTSISLFRAIASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEK 543 (1252)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~l~~g~~i~~~~~~~~~~~~~~i~~~~y~~~~l~~~e~~~~~~~~ 543 (1252)
.++. +...+ ..
T Consensus 326 --------------------------------------~~~~-~~~~~----------------------------~~-- 336 (607)
T 3bk7_A 326 --------------------------------------QGYL-KDENV----------------------------RF-- 336 (607)
T ss_dssp --------------------------------------HTEE-TTTTE----------------------------EC--
T ss_pred --------------------------------------HHCC-HHHHH----------------------------HC--
T ss_conf --------------------------------------5101-34554----------------------------30--
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 26875332100131257656874126789999999999999999998713788886530101000000124689999887
Q 000853 544 ITSGNTTVGRQTLESRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDR 623 (1252)
Q Consensus 544 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1252)
.. ... ..
T Consensus 337 --------------------------------------------------~~----------~~~----~~--------- 343 (607)
T 3bk7_A 337 --------------------------------------------------RP----------YEI----RF--------- 343 (607)
T ss_dssp --------------------------------------------------CS----------SCC----CC---------
T ss_pred --------------------------------------------------CC----------CCC----CC---------
T ss_conf --------------------------------------------------12----------123----45---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCH
Q ss_conf 76555688877789988886678888179999599999558520112555333322236057874873999945899886
Q 000853 624 DKKHIDAPLKTTAGPKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGK 703 (1252)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGK 703 (1252)
.. ..+ .... .....++++|++..+. . ..|+++++.+++||++||+|||||||
T Consensus 344 ~~---~~~----~~~~-------~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGK 395 (607)
T 3bk7_A 344 TK---LSE----RVDV-------ERETLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGK 395 (607)
T ss_dssp CC---STT----SCCC-------CCCEEEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSH
T ss_pred CC---CCC----CCCC-------CCCEEEEEECEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCH
T ss_conf 65---777----5444-------6752899913098744-------------3-48993515327998999999999899
Q ss_pred HHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 78998883497897079999999950783433335899736988899999999999998724999999989999999999
Q 000853 704 TTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVL 783 (1252)
Q Consensus 704 tTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l 783 (1252)
|||+++|+|...+ .+|+|.++ ..++|++|+....+.+||+|.+....... ....+++.+++
T Consensus 396 STLlk~l~Gl~~p--~~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l 456 (607)
T 3bk7_A 396 TTFVKMLAGVEEP--TEGKVEWD----------LTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELL 456 (607)
T ss_dssp HHHHHHHHTSSCC--SBSCCCCC----------CCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTH
T ss_pred HHHHHHHHCCCCC--CCEEEEEE----------EEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHH
T ss_conf 9999999669888--86289990----------27999805766778984999997531258-------77899999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC
Q ss_conf 98299542223234898887798899999999999509968899399999999999999999999987-79899999458
Q 000853 784 QTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQ 862 (1252)
Q Consensus 784 ~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~h~ 862 (1252)
+.+++.+..+..+ ..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|||+++|+
T Consensus 457 ~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 457 KPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 8769933754992-----23799999999999999748998999687447899999999999999997479899999098
Q ss_pred CCHHHHHHHCCEEEEEC-CCEEEEECCCCCC
Q ss_conf 98899997200146643-9589996699875
Q 000853 863 PSIDIFEAFDDLILMKN-GGRIIYSGPLGQH 892 (1252)
Q Consensus 863 ~~~~~~~~~d~i~~l~~-gg~~~~~g~~~~~ 892 (1252)
+. ++...+|++++|.+ .|.++..|++.+.
T Consensus 532 ~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 532 VL-MIDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HH-HHHHHCCEEEEECCCCCEEEECCCHHHH
T ss_conf 99-9998699999995983069742898999
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=446.97 Aligned_cols=216 Identities=22% Similarity=0.233 Sum_probs=167.9
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.+++++++..+. ...|+.+++.+++||++||+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred EEEECCEEEEEC--------------CEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE--
T ss_conf 699823399979--------------8899826646889989999999999899999999578889--9818999984--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 83433335899736988899999999999998724999999989999999999982995422232348988877988999
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rk 810 (1252)
.++|++|+.......||+|++.+...... .. ....++++++.+++.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHCC--CH----HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------56761400034547779999987553112--11----6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECC
Q ss_conf 99999999509968899399999999999999999999987-7989999945898899997200146643-958999669
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGP 888 (1252)
Q Consensus 811 rv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~h~~~~~~~~~~d~i~~l~~-gg~~~~~g~ 888 (1252)
||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|.|||+++|++. ++...+|++++|.. .|.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 987501588898519
Q 000853 889 LGQHSCKVIDYFESI 903 (1252)
Q Consensus 889 ~~~~~~~~~~yf~~~ 903 (1252)
+.........|+...
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=443.45 Aligned_cols=202 Identities=23% Similarity=0.265 Sum_probs=163.0
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 79999599999558520112555333322236057874873999945899886789988834978970799999999507
Q 000853 651 TLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPK 730 (1252)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~ 730 (1252)
.++++|+++.+. ...|+++++.+++||++||+||||||||||+++|+|...+ .+|+|.++
T Consensus 287 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~---- 346 (538)
T 1yqt_A 287 LVTYPRLVKDYG--------------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEWD---- 346 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCCC----
T ss_pred EEEEEEEEEEEC--------------CEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEEC----
T ss_conf 899930799989--------------9899907441289989999889999999999999679989--97189987----
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 83433335899736988899999999999998724999999989999999999982995422232348988877988999
Q 000853 731 VQHTFARISGYCEQNDIHSPNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 731 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rk 810 (1252)
..++|++|+....+.+||.|.+......... ..+.+.++++.+++.+..+..+ ..|||||||
T Consensus 347 ------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 347 ------LTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred ------CEEEEEECCCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf ------4699982677678888599999864036887-------8999999999749915653994-----448999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECC
Q ss_conf 99999999509968899399999999999999999999987-7989999945898899997200146643-958999669
Q 000853 811 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGP 888 (1252)
Q Consensus 811 rv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~h~~~~~~~~~~d~i~~l~~-gg~~~~~g~ 888 (1252)
||+||++|+.+|++|+|||||+|||..+...+++.|+++++ .|.|||+++|++. ++...+|++++|.+ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCC
T ss_conf 9999999972899899939801089999999999999999867989999939899-999968999999088315740489
Q ss_pred CCC
Q ss_conf 987
Q 000853 889 LGQ 891 (1252)
Q Consensus 889 ~~~ 891 (1252)
+.+
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
T ss_conf 899
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=440.19 Aligned_cols=412 Identities=21% Similarity=0.269 Sum_probs=286.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9998579999968999898199899983268999989127876554238876654-456888988999999976128998
Q 000853 1 MTLLLGHPGCGKTTLLSALSGKLSHSLKVSGEVSYNGYRLDEFVPQKTSAYISQY-DLHIAEMTVRETIDFSARCQGTGH 79 (1252)
Q Consensus 1 lt~IlGpsGSGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~-d~l~~~lTVrEnL~f~a~l~~~~~ 79 (1252)
+++|+||||||||||+++|+|- ++ +|.+... +..++|++|+ +.+++.+||.|++.+ ...+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG---------~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~--- 523 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG---------QV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVG--- 523 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT---------CS--TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCSS---
T ss_pred EEEEECCCCCCHHHHHHHHHCC---------CC--CCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH--HHCC---
T ss_conf 8999999998799999999489---------86--7976635---41699973564324557809999998--6127---
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 875047999999850889997246788887631100121299999992984-4355422588654467232213489998
Q 000853 80 RADSMKEVIKLEKLAGIFPDPDVDAYMKAISVEGLEKNLQTDYILKILGLD-ICADTIVGDPMRRGVSGGQKKRLTTGEL 158 (1252)
Q Consensus 80 ~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~~lgL~-~~~~T~VG~~~~~gLSGGQKrRLsIA~a 158 (1252)
. +..++++++.+||+ +..+..+++ ||||||||++||+|
T Consensus 524 ---~---------------------------------~~~v~~~L~~lgL~~~~~~~~~~~-----LSGGqkQRvaLArA 562 (986)
T 2iw3_A 524 ---T---------------------------------KEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARA 562 (986)
T ss_dssp ---C---------------------------------HHHHHHHHHHTTCCHHHHHSBGGG-----CCHHHHHHHHHHHH
T ss_pred ---H---------------------------------HHHHHHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHH
T ss_conf ---9---------------------------------999999999869984464398020-----79999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCCEE-EECCCCHHHHHH
Q ss_conf 8329817366269866385989999999999857269889999348982688300318997298088-757810389987
Q 000853 159 IVGPTRALFMDEISNGLDSSTTFQIVSFLKHLVHITDATALISLLQPAPETFDLFDDVMLMAEGKIV-YHGPRSYICKFF 237 (1252)
Q Consensus 159 L~~~p~IllLDEPTSgLDs~s~~~I~~~L~~l~~~~~~t~i~~i~q~~~~~~~lfD~I~vL~~G~vv-~~G~~~~~~~~f 237 (1252)
++.+|++++|||||+|||+.++.++++.|+. .+.|++++ .|....+.+.+|+|++|.+|+++ +.|+..+.....
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIiv-SHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~ 637 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITI-SHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC 637 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEE-CSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHC
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEE-ECCHHHHHHHCCEEEEEECCEEECCCCCHHHHHHHH
T ss_conf 9649999999797667999999999999986----79989999-798899998689999997994426779999998614
Q ss_pred HHCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 75699999999956799982390224443103899998889989999997583427799998300188721100012466
Q 000853 238 EDCGFRCPERKGVADFLQEVISRKDQEQYWHRKDHPYGYVSIDQFITKFKTSHLGLKLEEELAHSFNKSETHKKALSFKK 317 (1252)
Q Consensus 238 ~~~G~~~p~~~~~adf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1252)
. . .. .
T Consensus 638 ----------------------~---~---------------------------------------------~~-----~ 642 (986)
T 2iw3_A 638 ----------------------P---A---------------------------------------------AK-----A 642 (986)
T ss_dssp ----------------------G---G---------------------------------------------GG-----G
T ss_pred ----------------------H---H---------------------------------------------HH-----H
T ss_conf ----------------------8---8---------------------------------------------99-----9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55618999999998999982048368999999999999875420013467836476877988999999999995488889
Q 000853 318 YSLTKWELLKACATREFLLMKRNSFIYVFKSTQLVIIASITMTAFLRSQLAVDVLHANAYLGALFYALMILIVNGFPELN 397 (1252)
Q Consensus 318 ~~~s~~~q~~~~~~r~~~~~~r~~~~~~~~~~~~~~~a~~~g~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1252)
+ + .....
T Consensus 643 ~--------------------------------------------~--~l~~~--------------------------- 649 (986)
T 2iw3_A 643 Y--------------------------------------------E--ELSNT--------------------------- 649 (986)
T ss_dssp S--------------------------------------------S--STTTC---------------------------
T ss_pred H--------------------------------------------H--HHHHH---------------------------
T ss_conf 9--------------------------------------------8--64454---------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76432257755303998680348998897852199998999987765325876647789999999999999999999999
Q 000853 398 MTASRLAVFYKQRDLCFYPAWAYAIPASILKVPLSLLESFVWTSLTYYVIGYSPEVGRFFRQFLLLFTVHLTSISLFRAI 477 (1252)
Q Consensus 398 ~~~~~~~~~~~~r~~~~y~~~~~~l~~~~~~lp~~~l~~~~~~~i~y~l~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 477 (1252)
T Consensus 650 -------------------------------------------------------------------------------- 649 (986)
T 2iw3_A 650 -------------------------------------------------------------------------------- 649 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88128978899999999999988503201799987420123513799999999998733899432126875332100131
Q 000853 478 ASLFRTVAVSLMIGTMAILMLLLFGGFIIPKKSMPSWLKWGFWVCPLTYGEIGLTVNEFLAPRWEKITSGNTTVGRQTLE 557 (1252)
Q Consensus 478 ~~~~~~~~~a~~i~~~~~~~~~l~~g~~i~~~~~~~~~~~~~~i~~~~y~~~~l~~~e~~~~~~~~~~~~~~~~g~~~l~ 557 (1252)
.. .+
T Consensus 650 --------------------------------~~----------------------------~~---------------- 653 (986)
T 2iw3_A 650 --------------------------------DL----------------------------EF---------------- 653 (986)
T ss_dssp --------------------------------CC----------------------------CC----------------
T ss_pred --------------------------------HH----------------------------HC----------------
T ss_conf --------------------------------43----------------------------20----------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25765687412678999999999999999999871378888653010100000012468999988776555688877789
Q 000853 558 SRGLNFDSSFYWISIAALIGFTVLFNVVFTLALTFLKSPGKSRTIIAYEKYSKLQDQKDGSSGSDRDKKHIDAPLKTTAG 637 (1252)
Q Consensus 558 ~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1252)
..+ . ... ....
T Consensus 654 ------------------------------------~~p----------------~----------~~~--~~~~----- 664 (986)
T 2iw3_A 654 ------------------------------------KFP----------------E----------PGY--LEGV----- 664 (986)
T ss_dssp ------------------------------------CCC----------------C----------CCC--CTTC-----
T ss_pred ------------------------------------CCC----------------C----------CCC--CCCC-----
T ss_conf ------------------------------------356----------------5----------554--3345-----
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 98888667888817999959999955852011255533332223605787487399994589988678998883497897
Q 000853 638 PKRGKMVLPFEPLTLTFEDVQYYVDTPSAMKKRGFNQKKLQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGG 717 (1252)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~~~~~ 717 (1252)
.. .....++.+|+++.++. ..+.+|+++|+.+++||++||+||||||||||+++|+|...+
T Consensus 665 ~~-------~~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P- 725 (986)
T 2iw3_A 665 KT-------KQKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP- 725 (986)
T ss_dssp CS-------TTSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC-
T ss_pred CC-------CCCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-
T ss_conf 66-------78706999846998189-----------874134322799828978999899998799999999579888-
Q ss_pred EEEEEEEECCEECCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHCC------------CC--------------
Q ss_conf 0799999999507834333358997369888----99999999999998724------------99--------------
Q 000853 718 IIEGDIRIGGYPKVQHTFARISGYCEQNDIH----SPNITVEESVIFSAWLR------------LS-------------- 767 (1252)
Q Consensus 718 ~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~----~~~ltv~e~l~~~a~lr------------~~-------------- 767 (1252)
.+|+|.++|.. .++|++|+..+ ....|++|++.+.-... ..
T Consensus 726 -~sG~I~~~~~~--------~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~ 796 (986)
T 2iw3_A 726 -TSGEVYTHENC--------RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIE 796 (986)
T ss_dssp -SEEEEEECTTC--------CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEET
T ss_pred -CCEEEEECCCC--------CEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf -86089986864--------257631302433210011479999887750450255554332103435554420001123
Q ss_pred --------------------------------------CCCC----------------------------------HHHH
Q ss_conf --------------------------------------9999----------------------------------9899
Q 000853 768 --------------------------------------PEID----------------------------------LKTK 775 (1252)
Q Consensus 768 --------------------------------------~~~~----------------------------------~~~~ 775 (1252)
.... ....
T Consensus 797 g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~ 876 (986)
T 2iw3_A 797 GTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLT 876 (986)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 20123444455543122200210002554320000012343234432101677766676655443245554302232347
Q ss_pred HHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999998299542--22323489888779889999999999950996889939999999999999999999998779
Q 000853 776 AEFVNEVLQTIELDGI--KYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVKNVVETG 853 (1252)
Q Consensus 776 ~~~v~~~l~~l~l~~~--~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g 853 (1252)
.++++++++.+||.+. .+.. ++.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++ +
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g 948 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E 948 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSC-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred HHHHHHHHHHCCCCCHHHCCCC-----CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH---C
T ss_conf 9999999997699805444898-----0423999999999999998399999997986577999999999999974---9
Q ss_pred CEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 89999945898899997200146643958999669
Q 000853 854 RTVVCTIHQPSIDIFEAFDDLILMKNGGRIIYSGP 888 (1252)
Q Consensus 854 ~tvi~~~h~~~~~~~~~~d~i~~l~~gg~~~~~g~ 888 (1252)
.|||+++|++. .+...+|++++|. +|+++..|+
T Consensus 949 ~tVIiISHD~e-~v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 949 GGVIIITHSAE-FTKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp SEEEEECSCHH-HHTTTCCEEECCB-TTBCCC---
T ss_pred CEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 97999979899-9998589999998-999998687
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=432.40 Aligned_cols=201 Identities=19% Similarity=0.220 Sum_probs=158.3
Q ss_pred CCCCCEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 2223605787487-----39999458998867899888349789707999999995078343333589973698889999
Q 000853 678 QLLSDITGTFRPG-----ILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQHTFARISGYCEQNDIHSPNI 752 (1252)
Q Consensus 678 ~~L~~vs~~i~~G-----~~~~i~G~sGaGKtTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 752 (1252)
..++++++.+++| |++||+||||||||||+++|+|...+ .+|+. .. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999987249999999899999999999829954222323489888779889999999999950996889939999
Q 000853 753 TVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 832 (1252)
Q Consensus 753 tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~p~il~lDEpts 832 (1252)
||+|.+.. ..+... .. .+.++++++.+++.+..+.. ...|||||||||+||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~--~~~~~~-~~----~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFK--KIRGQF-LN----PQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHH--HCSSTT-TS----HHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHH--HHHCCC-CC----HHHHHHHHHHCCCHHHHCCC-----HHHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 69999987--753032-46----89999999874983465199-----32389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf 9999999999999999987-7989999945898899997200146643-958999669987501588898519
Q 000853 833 GLDARAAAIVMRAVKNVVE-TGRTVVCTIHQPSIDIFEAFDDLILMKN-GGRIIYSGPLGQHSCKVIDYFESI 903 (1252)
Q Consensus 833 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~h~~~~~~~~~~d~i~~l~~-gg~~~~~g~~~~~~~~~~~yf~~~ 903 (1252)
|||+.+...+++.|+++.+ .|.|||+++|++. ++...+|++++|.. .|+++..|++.+.......++..+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=431.79 Aligned_cols=197 Identities=25% Similarity=0.343 Sum_probs=143.4
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCC---------------CC--CC--EEEEEEEECCEECCCCCC--
Q ss_conf 3222360578748739999458998867899888349---------------78--97--079999999950783433--
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLMDVLSGR---------------KT--GG--IIEGDIRIGGYPKVQHTF-- 735 (1252)
Q Consensus 677 ~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~l~g~---------------~~--~~--~~~G~i~~~g~~~~~~~~-- 735 (1252)
..+|+|||+.+++||++||+||||||||||++++.+. .. .+ ...|.|.+++.+......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred CCCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 01234541674589889999117988889999998998887754202454443210121246752674056677887764
Q ss_pred -C-----------------------------------------CEEEEECCCCCCC------------------------
Q ss_conf -3-----------------------------------------3589973698889------------------------
Q 000853 736 -A-----------------------------------------RISGYCEQNDIHS------------------------ 749 (1252)
Q Consensus 736 -~-----------------------------------------~~~~~v~q~~~~~------------------------ 749 (1252)
. ...|++.|+..+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHEEE
T ss_conf 15342046789998612513333166611144357777565135663474202225555110565567554744442021
Q ss_pred --------CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --------999999999999872499999998999999999998299542-22323489888779889999999999950
Q 000853 750 --------PNITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRKRLTIAVELVA 820 (1252)
Q Consensus 750 --------~~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~ig~~~~~~lSgG~rkrv~ia~~l~~ 820 (1252)
..+||+|++.+.... ...+++.+.++.+++... .+.. ...|||||||||+||++|+.
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHCCHHHHHHHHHHH---------HHHHHHHHHHHHCCCCHHHCCCC-----CHHCCHHHHHHHHHHHHHHH
T ss_conf 57778887647799999999874---------65789999999869960120497-----01289999999999999960
Q ss_pred CC---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE-----CCCEEEEECCC
Q ss_conf 99---68899399999999999999999999987798999994589889999720014664-----39589996699
Q 000853 821 NP---SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGRIIYSGPL 889 (1252)
Q Consensus 821 ~p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~-----~gg~~~~~g~~ 889 (1252)
+| ++|+|||||+|||+.+...+++.|+++++.|.|||+++|++. ....+|++++|. ++|++++.|++
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 88899489996987799999999999999999977998999959889--9985999999657767889889996699
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=353.04 Aligned_cols=199 Identities=28% Similarity=0.447 Sum_probs=145.8
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCCC-CC---EEE------EEEEECCEECCCCC---
Q ss_conf 3222360578748739999458998867899---------88834978-97---079------99999995078343---
Q 000853 677 LQLLSDITGTFRPGILTALMGVSGAGKTTLM---------DVLSGRKT-GG---IIE------GDIRIGGYPKVQHT--- 734 (1252)
Q Consensus 677 ~~~L~~vs~~i~~G~~~~i~G~sGaGKtTLl---------~~l~g~~~-~~---~~~------G~i~~~g~~~~~~~--- 734 (1252)
...|+|+|+.+++|++++|+|+||||||||+ +.+.+... .+ ... +.+.++..+.....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 44336531287189599999258888154577777789998740344566653333551011425763156556655556
Q ss_pred -----------------------------------------CCCEEEEECCCCCCCC-----------------------
Q ss_conf -----------------------------------------3335899736988899-----------------------
Q 000853 735 -----------------------------------------FARISGYCEQNDIHSP----------------------- 750 (1252)
Q Consensus 735 -----------------------------------------~~~~~~~v~q~~~~~~----------------------- 750 (1252)
..+..|++.++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 43022367889998612668775045554311114666443236763487741016761563220146435666554301
Q ss_pred ---------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf ---------99999999999872499999998999999999998299542223234898887798899999999999509
Q 000853 751 ---------NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGIKYSLVGLPGVSGLSTEQRKRLTIAVELVAN 821 (1252)
Q Consensus 751 ---------~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ig~~~~~~lSgG~rkrv~ia~~l~~~ 821 (1252)
.+||.|++.|.... ...+++.++++.+||.... .+.+ ...||||||||+.||++|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHC
T ss_conf 56777877407799999987515---------0589999999981886333---1687-157999999999999999628
Q ss_pred C---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE-----CCCEEEEECCCC
Q ss_conf 9---68899399999999999999999999987798999994589889999720014664-----395899966998
Q 000853 822 P---SIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGRIIYSGPLG 890 (1252)
Q Consensus 822 p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~-----~gg~~~~~g~~~ 890 (1252)
| ++++|||||+|||+.+...+++.|+++++.|.|||+++|++ +....+|++++|. ++|++++.|++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 788978999798889999999999999999996699899993799--999729999996687777897899976999
No 10
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=1.00 E-value=1 Score=333.22 Aligned_cols=195 Identities=26% Similarity=0.380 Sum_probs=143.4
Q ss_pred CCCCEEEEEECCEEEEEECCCCCCHHHHHHH-HHCCC-------CC----------------CEEEE-------EEEECC
Q ss_conf 2236057874873999945899886789988-83497-------89----------------70799-------999999
Q 000853 679 LLSDITGTFRPGILTALMGVSGAGKTTLMDV-LSGRK-------TG----------------GIIEG-------DIRIGG 727 (1252)
Q Consensus 679 ~L~~vs~~i~~G~~~~i~G~sGaGKtTLl~~-l~g~~-------~~----------------~~~~G-------~i~~~g 727 (1252)
.|+|+|+.+++||++||+|+||||||||++. |+|.. .+ ....| .|.+++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 51451699868978999848985899999999998888872677776554332222234554345676123533999878
Q ss_pred EECCCCCC-------------C---------CEEEEECC----------------------CCCCCC-------------
Q ss_conf 50783433-------------3---------35899736----------------------988899-------------
Q 000853 728 YPKVQHTF-------------A---------RISGYCEQ----------------------NDIHSP------------- 750 (1252)
Q Consensus 728 ~~~~~~~~-------------~---------~~~~~v~q----------------------~~~~~~------------- 750 (1252)
.+...... + +..+|.++ +..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCCCCCC
T ss_conf 00788865541123217899999970084877627764324335555654000477730134431776300143235744
Q ss_pred -------------------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHH
Q ss_conf -------------------99999999999872499999998999999999998299542-2232348988877988999
Q 000853 751 -------------------NITVEESVIFSAWLRLSPEIDLKTKAEFVNEVLQTIELDGI-KYSLVGLPGVSGLSTEQRK 810 (1252)
Q Consensus 751 -------------------~ltv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~ig~~~~~~lSgG~rk 810 (1252)
.+|++|.+.|... . ...+++.++++.++|... .+.. ...|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~---~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFAD------E---SAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------S---HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHCCHHHHHHHHHC------C---HHHHHHHHHHHHCCCCCCCCCCC-----CCCCCHHHHH
T ss_conf 33666766415788999974459999988621------2---67999999999869982313588-----1109999999
Q ss_pred HHHHHHHHHHC---CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE-----CCCE
Q ss_conf 99999999509---968899399999999999999999999987798999994589889999720014664-----3958
Q 000853 811 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRAVKNVVETGRTVVCTIHQPSIDIFEAFDDLILMK-----NGGR 882 (1252)
Q Consensus 811 rv~ia~~l~~~---p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~h~~~~~~~~~~d~i~~l~-----~gg~ 882 (1252)
|+.||++|+.+ |++++|||||+|||..+...+++.|+++++.|.|||+++|++ +....+|++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl--~~i~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM--QVVAASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH--HHHHHCCEEEEECCCCCCCCCE
T ss_conf 99999999728999978998798789999999999999999986799899982888--9998499999977877777988
Q ss_pred EEEECCC
Q ss_conf 9996699
Q 000853 883 IIYSGPL 889 (1252)
Q Consensus 883 ~~~~g~~ 889 (1252)
+++.|++
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9997089
Done!