BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000856
(1252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/1238 (35%), Positives = 693/1238 (55%), Gaps = 23/1238 (1%)
Query: 29 LFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFG------KNQTDIH----- 77
+F +A D M+ G+L A+IHG ++P+ L+FG+M + F KN T++
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 78 ----KMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVG 133
K+ E+ YA Y+ +G V +Y +++ W RQ+ +R+K+ A++ Q++G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 134 FFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIA 193
+FD G++ ++ D + + I +K+G F ++TF G ++GF W+L L+ +A
Sbjct: 158 WFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 194 VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDA 253
+ P + + G++A L+ T K +YA AG +AE+ +A +RTV ++ G+ K L Y++
Sbjct: 217 ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 254 IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIV 313
++ +LG K + + +G + + S+AL FWY + + G+ T FS ++
Sbjct: 277 LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 314 GGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFS 373
G S+GQ+ N+ AF+ + A Y++ +II KPSI +G D + GN+EFKN+ FS
Sbjct: 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 374 YPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKT 433
YPSR +V I + ++ L++R YDP G V +D DI+T
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 434 LQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
+ +R+LR+ IG+V+QEP LFATTI ENI YG+ + FI LP+ +
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD SE++VQ ALD+ GR
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 554 TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANP 613
TT+V+AHRLST+RN D +A G +VE G H+EL+ + G Y L+ Q + N
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNE 636
Query: 614 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYF 673
G + +S E ++ P F
Sbjct: 637 --ACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDED-VPPASF 693
Query: 674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE-FVF 732
R+LKLN+ EWPY ++G ++++G + P F+++ + ++ VF P +R+ F
Sbjct: 694 WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL 753
Query: 733 IYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAR 792
+++ G+ + + + +Q + F GE LT R+R M+ ++LR +V WFD+ ++ + + R
Sbjct: 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 793 LATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL 852
LA DAA VK A R++VI QN+ +L T I++ I W+++LL+L P++ +A +
Sbjct: 814 LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMK 873
Query: 853 SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 912
L G A K + IA E + N RTV + + K +++ L++P ++++
Sbjct: 874 MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933
Query: 913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPE 972
GI F +Q ++ S A +G +LV + + TF A +V + S AP+
Sbjct: 934 FGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993
Query: 973 IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFN 1032
+ S + ++++ ID + G ++ V F YP+RP + V + +
Sbjct: 994 YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ 1092
L ++ GQ+ ALVG+SG GKS+V+ L+ERFYDP AG V +DGK+I++LN++ LR ++G+V
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 1093 QEPALFAASIFDNIAYGKEGXXXX--XXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 1150
QEP LF SI +NIAYG H F+ +LP+ Y T VG++G QLS
Sbjct: 1114 QEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173
Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 1210
GGQKQRIAIARA+++ P ILLLDEATSALD ESE V+QEAL++ GRT +++AHRLSTI
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI 1233
Query: 1211 RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
+ D I V+Q+G++ E G+H +L+++ G Y ++ +Q
Sbjct: 1234 QNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVSVQ 1270
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/1238 (35%), Positives = 693/1238 (55%), Gaps = 23/1238 (1%)
Query: 29 LFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFG------KNQTDIH----- 77
+F +A D M+ G+L A+IHG ++P+ L+FG+M + F KN T++
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 78 ----KMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVG 133
K+ E+ YA Y+ +G V +Y +++ W RQ+ +R+K+ A++ Q++G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 134 FFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIA 193
+FD G++ ++ D + + I +K+G F ++TF G ++GF W+L L+ +A
Sbjct: 158 WFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 194 VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDA 253
+ P + + G++A L+ T K +YA AG +AE+ +A +RTV ++ G+ K L Y++
Sbjct: 217 ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 254 IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIV 313
++ +LG K + + +G + + S+AL FWY + + G+ T FS ++
Sbjct: 277 LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 314 GGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFS 373
G S+GQ+ N+ AF+ + A Y++ +II KPSI +G D + GN+EFKN+ FS
Sbjct: 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 374 YPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKT 433
YPSR +V I + ++ L++R YDP G V +D DI+T
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 434 LQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
+ +R+LR+ IG+V+QEP LFATTI ENI YG+ + FI LP+ +
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD SE++VQ ALD+ GR
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 554 TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANP 613
TT+V+AHRLST+RN D +A G +VE G H+EL+ + G Y L+ Q + N
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNE 636
Query: 614 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYF 673
G + +S E ++ P F
Sbjct: 637 --ACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDED-VPPASF 693
Query: 674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE-FVF 732
R+LKLN+ EWPY ++G ++++G + P F+++ + ++ VF P +R+ F
Sbjct: 694 WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL 753
Query: 733 IYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAR 792
+++ G+ + + + +Q + F GE LT R+R M+ ++LR +V WFD+ ++ + + R
Sbjct: 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 793 LATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL 852
LA DAA VK A R++VI QN+ +L T I++ I W+++LL+L P++ +A +
Sbjct: 814 LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMK 873
Query: 853 SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 912
L G A K + IA E + N RTV + + K +++ L++P ++++
Sbjct: 874 MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933
Query: 913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPE 972
GI F +Q ++ S A +G +LV + + TF A +V + S AP+
Sbjct: 934 FGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993
Query: 973 IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFN 1032
+ S + ++++ ID + G ++ V F YP+RP + V + +
Sbjct: 994 YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ 1092
L ++ GQ+ ALVG+SG GKS+V+ L+ERFYDP AG V +DGK+I++LN++ LR ++G+V
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 1093 QEPALFAASIFDNIAYGKEGXXXX--XXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 1150
QEP LF SI +NIAYG H F+ +LP+ Y T VG++G QLS
Sbjct: 1114 QEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173
Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 1210
GGQKQRIAIARA+++ P ILLLDEATSALD ESE V+QEAL++ GRT +++AHRLSTI
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI 1233
Query: 1211 RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
+ D I V+Q+G++ E G+H +L+++ G Y ++ +Q
Sbjct: 1234 QNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVSVQ 1270
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/1265 (32%), Positives = 645/1265 (50%), Gaps = 48/1265 (3%)
Query: 23 SLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHK---- 78
S+P QL+ + + L+ G+L AVI G+ +P+ +L G++ F Q I+
Sbjct: 61 SIP--QLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGST 118
Query: 79 ------------MTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEA 126
H+V + + + + + + C++Y E+ + LR++++++
Sbjct: 119 FLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKS 178
Query: 127 VLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWR 186
+L+Q++ +FDT+ +G + + + V++ +K+G YLS F+ G +V F +W+
Sbjct: 179 ILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQ 237
Query: 187 LALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKA 246
L L+ +AV P A G A +++ + YA AG + E+ I+ +RTV S G
Sbjct: 238 LTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297
Query: 247 LNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFT 306
L YS A++ K G G+ G+ G +S+AL F+ ++ +G + G T
Sbjct: 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLT 357
Query: 307 AIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIE 366
S ++G M+LG + L + A + E++ +KP I GR ++ G+I
Sbjct: 358 TFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDIT 417
Query: 367 FKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLL 426
+NV F+YPSRPDV I R ++ L+ R+YD G + +
Sbjct: 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITI 477
Query: 427 DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFI 486
D VD++ + L +LR + +V+QEPALF TI ENI GK FI
Sbjct: 478 DGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFI 537
Query: 487 TLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 546
LPNGY+T VG+RG QLSGGQKQRIAIARA+++NPKILLLDEATSALDA SE IVQ+AL
Sbjct: 538 KTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL 597
Query: 547 DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVR 606
D+ GRTT+++AHRLSTIRN D + + GQVVE G H L+A+ G Y L+ Q
Sbjct: 598 DKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTD 657
Query: 607 NRDFA--------NPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGA--DGRIEM 656
D A N G D + E
Sbjct: 658 AVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEER 717
Query: 657 VSNAETDR------KNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMAC 710
+ R +N A +L P +G + + GFI PT+++
Sbjct: 718 IGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTS 777
Query: 711 MIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAA 770
+ VF NPA + + +++ + + +F I E+LT +R +
Sbjct: 778 FMNVF-AGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRN 836
Query: 771 ILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 830
+L +G+FD ++ S ++ RLATD ++++AI R S ++ + S++ +AF W
Sbjct: 837 VLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGW 896
Query: 831 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA---HAKTSMIAGEGVSNIRTVAAFNA 887
+++LLI+ P++ F Q L + F G K+ A + IA E + N+RTV A
Sbjct: 897 QMALLIIAILPIVA---FGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAR 953
Query: 888 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFS 947
++ FC +L +P + ++ + G+ +G + L+ G+ L+ T
Sbjct: 954 EDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQ 1013
Query: 948 --KXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVET 1005
+ + +++ S PE + + G +F L + ++ID E +
Sbjct: 1014 PMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEK-KK 1072
Query: 1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
+ G++ ++V FAYP RP++ + K + + GQ+ ALVG SG GKS+V+AL+ERFYD
Sbjct: 1073 LYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132
Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GXXXXXXXXXXX 1123
G++ IDG +I+ LN + R +I +V QEP LF SI +NI YG +
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAAR 1192
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
H F++ LP ++T VG+RG QLSGGQKQRIAIARA+++NP ILLLDEATSALD ES
Sbjct: 1193 LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 1184 ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
E V+QEAL+R GRT +++AHRL+T+ DCI VV +G I+E+G+H++L+S GAY +
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYK 1311
Query: 1244 LLQLQ 1248
L Q Q
Sbjct: 1312 LTQKQ 1316
Score = 310 bits (793), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 201/601 (33%), Positives = 293/601 (48%), Gaps = 10/601 (1%)
Query: 7 EAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMV 66
+A L E E+ Q F++ A + L I G A I G P + + F +
Sbjct: 721 DALSRLKQELEENNAQKTNLFEILYHARPHALSLFI-GMSTATIGGFIYPTYSVFFTSFM 779
Query: 67 NGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEA 126
N F N D H +AL F+ L S+ E LR K
Sbjct: 780 NVFAGNPADFLSQGH---FWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRN 836
Query: 127 VLKQDVGFFDTDAR-TGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW 185
VL Q +GFFD+ +G I ++TD ++ AI + I L + +AG+ + F W
Sbjct: 837 VLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGW 896
Query: 186 RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESK 245
++ALL IA++P +AF L TG KS +A++G IA +AI VRTV + E
Sbjct: 897 QMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDT 956
Query: 246 ALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACM--SWALVFWYAGVFIRNGVTDGGK 303
++ + + K K +GL GC + + + A A + +
Sbjct: 957 FYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMR 1016
Query: 304 AFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNG 363
+++ + +LG + S ++K AG + ++++ I G ++ G
Sbjct: 1017 VLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEK-KKLYG 1075
Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGH 423
+ FKNV F+YP RP++ I + S L+ERFYD G
Sbjct: 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135
Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG--KPXXXXXXXXXXXXXXX 481
+ +D +IKTL R QI +V+QEP LF +I ENI+YG
Sbjct: 1136 IFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLAN 1195
Query: 482 XHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
H+FI LP G+ T+VG+RG QLSGGQKQRIAIARA+++NPKILLLDEATSALD SE +
Sbjct: 1196 IHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKV 1255
Query: 542 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 601
VQEALDR GRT +V+AHRL+T+ N D +AV+ G ++E GTH +L+++ GAY L +
Sbjct: 1256 VQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQK 1315
Query: 602 Q 602
Q
Sbjct: 1316 Q 1316
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 320 bits (821), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 195/520 (37%), Positives = 294/520 (56%), Gaps = 13/520 (2%)
Query: 95 LIVCFSSYAEIACWMY--TGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDT 152
+ +C ++ I ++ +G+R V+ LR ++L+Q+V FFD RTG+++ +S+DT
Sbjct: 71 VFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDT 129
Query: 153 LLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGL 212
L+ +++E + + + + G+ + F + LA ++V+P ++ +Y L L
Sbjct: 130 ALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKL 189
Query: 213 TSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGL 272
T +++S A A +AE+ I VRTV ++ E + Y+ + + ++L K A+
Sbjct: 190 TKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFF 249
Query: 273 GCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGK 332
G T + V + G+ + + G+ + + A G+S+G S KG
Sbjct: 250 GATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGL 309
Query: 333 AAGYKLMEIIKQKPSIIQDPTN-GRCLDE--VNGNIEFKNVTFSYPSRPDVIIFRDFSIF 389
AG +L E+++++P + P N G L+E G +EFKNV F+YP+RP+V IF+DFS+
Sbjct: 310 GAGGRLWELLEREPKL---PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLS 366
Query: 390 FPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE 449
P L+ R YDP +G + LD DI+ L WLR +IG V+QE
Sbjct: 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 426
Query: 450 PALFATTILENILYG--KPXXXXXXXXXXXXXXXXH-SFITLLPNGYSTQVGERGVQLSG 506
P LF+ +I ENI YG P +FI P G++T VGE+GV LSG
Sbjct: 427 PILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 486
Query: 507 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR 566
GQKQRIAIARA+LKNPKILLLDEATSALDA +E +VQEALDRLM GRT +V+AHRLSTI+
Sbjct: 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK 546
Query: 567 NVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMV 605
N + VAV+ QG++ E G HEEL++K G Y L+ Q +
Sbjct: 547 NANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 586
Score = 307 bits (786), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 201/586 (34%), Positives = 307/586 (52%), Gaps = 23/586 (3%)
Query: 675 RLLKLNAPEWPYSIMGAIGSV-LSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 733
+LL L PE + A+G + +S I + + +I+V Y
Sbjct: 9 KLLGLAYPER-RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLG 67
Query: 734 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 793
L A I+ Y G+ + R+R + ++ILR EV +FD+ + RL
Sbjct: 68 LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGE--LINRL 125
Query: 794 ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 853
++D A + ++ + +S L+ + F V ++ +L P + +
Sbjct: 126 SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 185
Query: 854 LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ----NKILSLFCHELRVPQSQTLRR 909
L+ T + A+ + +A E + N+RTV AF + K S H +++ + + R
Sbjct: 186 LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245
Query: 910 SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSL 969
AG FG + + + +L+ G L+G T + S+ S
Sbjct: 246 ---AG-FFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 301
Query: 970 APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPV----ETIRGEIELRHVDFAYPSRPDV 1025
E+++G + G ++ L+R +P P E V ++ +G +E ++V FAYP+RP+V
Sbjct: 302 YSELMKGLGAGGRLWELLER----EPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEV 357
Query: 1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085
+F+DF+L I +G ALVG SGSGKS+V++L+ R YDP +G + +DG DIR+LN LR
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 1086 LKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXH---GFVSALPNAYKTPV 1142
KIG V QEP LF+ SI +NIAYG + F+ P + T V
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 1143 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL 1202
GE+GV LSGGQKQRIAIARA+LKNP ILLLDEATSALDAE+E ++QEAL+RLM GRT ++
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 537
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
+AHRLSTI+ + + V+ G+I E G H EL+S+P+G Y +L+ Q
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 318 bits (816), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 209/573 (36%), Positives = 316/573 (55%), Gaps = 23/573 (4%)
Query: 43 FGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQT-DIHKMTHEVCKYALYFVYLGLIVCFSS 101
F ++ +VI S+ FFL G++++ N T D +C L V+L C ++
Sbjct: 58 FLTMSSVISMSA--PFFL--GKIIDVIYTNPTVDYSDNLTRLC-LGLSAVFL----CGAA 108
Query: 102 YAEIACWMY--TGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAI 159
I ++ +G+R V+ LR ++L+Q+V FFD RTG+++ +S+DT L+ ++
Sbjct: 109 ANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSV 167
Query: 160 SEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRES 219
+E + + + + G+ + F + LA ++V+P ++ +Y L LT +++S
Sbjct: 168 TENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDS 227
Query: 220 YANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIA 279
A A +AE+ I VRTV ++ E + Y+ + + ++L K A+ G T
Sbjct: 228 LAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSG 287
Query: 280 CMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLM 339
+ V + G+ + + G+ + + A G+S+G S KG AG +L
Sbjct: 288 NLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLW 347
Query: 340 EIIKQKPSIIQDPTN-GRCLDE--VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXX 396
E+++++P + P N G L+E G +EFKNV F+YP+RP+V IF+DFS+ P
Sbjct: 348 ELLEREPKL---PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVT 404
Query: 397 XXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATT 456
L+ R YDP +G + LD DI+ L WLR +IG V+QEP LF+ +
Sbjct: 405 ALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCS 464
Query: 457 ILENILYG--KPXXXXXXXXXXXXXXXXH-SFITLLPNGYSTQVGERGVQLSGGQKQRIA 513
I ENI YG P +FI P G++T VGE+GV LSGGQKQRIA
Sbjct: 465 IAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA 524
Query: 514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV 573
IARA+LKNPKILLLDEATSALDA +E +VQEALDRLM GRT +V+AH LSTI+N + VAV
Sbjct: 525 IARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAV 584
Query: 574 IQQGQVVETGTHEELIAKA-GAYASLIRFQEMV 605
+ QG++ E G HEEL++K G Y L+ Q +
Sbjct: 585 LDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 617
Score = 303 bits (777), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 196/582 (33%), Positives = 305/582 (52%), Gaps = 15/582 (2%)
Query: 675 RLLKLNAPEWPYSIMGAIGSV-LSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 733
+LL L PE + A+G + +S I + + +I+V Y
Sbjct: 40 KLLGLAYPER-RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLG 98
Query: 734 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 793
L A I+ Y G+ + R+R + ++ILR EV +FD+ + RL
Sbjct: 99 LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGE--LINRL 156
Query: 794 ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 853
++D A + ++ + +S L+ + F V ++ +L P + +
Sbjct: 157 SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 216
Query: 854 LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ----NKILSLFCHELRVPQSQTLRR 909
L+ T + A+ + +A E + N+RTV AF + K S H +++ + + R
Sbjct: 217 LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 276
Query: 910 SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSL 969
AG FG + + + +L+ G L+G T + S+ S
Sbjct: 277 ---AG-FFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 332
Query: 970 APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFK 1029
E+++G + G ++ L+R ++ ++ ++ +G +E ++V FAYP+RP+V +F+
Sbjct: 333 YSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQ 392
Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089
DF+L I +G ALVG SGSGKS+V++L+ R YDP +G + +DG DIR+LN LR KIG
Sbjct: 393 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 452
Query: 1090 LVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXH---GFVSALPNAYKTPVGERG 1146
V QEP LF+ SI +NIAYG + F+ P + T VGE+G
Sbjct: 453 TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 512
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 1206
V LSGGQKQRIAIARA+LKNP ILLLDEATSALDAE+E ++QEAL+RLM GRT +++AH
Sbjct: 513 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHH 572
Query: 1207 LSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
LSTI+ + + V+ G+I E G H EL+S+P+G Y +L+ Q
Sbjct: 573 LSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 169/544 (31%), Positives = 273/544 (50%), Gaps = 26/544 (4%)
Query: 67 NGFGKNQTDIHKMTHEVCKYALYFVYLGLIVC--FSSYAEIACWMYTGERQVSTLRKKYL 124
+GFGK T + V +GL++ +SY C + + V T+R++
Sbjct: 54 DGFGK--------TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLF 105
Query: 125 EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA 184
++ V FFD + TG ++ ++ D+ V + S + + ++ + ++ F +
Sbjct: 106 GHMMGMPVAFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164
Query: 185 WRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGES 244
W+L+++ + + P ++ A + + ++ + + AEQ + + V + G+
Sbjct: 165 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224
Query: 245 KALNSYSDAIQNTLKL-GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVF--IRNGVTDG 301
+ D + N ++L G K A + IA ++ A V YA F + + +T G
Sbjct: 225 VETKRF-DKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVL-YAASFPSVMDSLTAG 282
Query: 302 GKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNG-RCLD 359
T +FS+++ M +S +N+ A F +G AA L I+ + Q+ G R +D
Sbjct: 283 --TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE----QEKDEGKRVID 336
Query: 360 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDP 419
G++EF+NVTF+YP R +V R+ ++ P LI RFYD
Sbjct: 337 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395
Query: 420 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXX 479
+ GH+L+D D++ L LR+Q+ LV+Q LF T+ NI Y +
Sbjct: 396 DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR 455
Query: 480 XX-XHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
FI + NG T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEATSALD S
Sbjct: 456 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
Query: 539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
E +Q ALD L RT++V+AHRLSTI D + V++ G +VE GTH EL+A+ G YA L
Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
Query: 599 IRFQ 602
+ Q
Sbjct: 576 HKMQ 579
Score = 233 bits (595), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 157/521 (30%), Positives = 267/521 (51%), Gaps = 14/521 (2%)
Query: 732 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 791
+ IG + + I Y S + + +RR + ++ V +FD++ + L +
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL--S 126
Query: 792 RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 851
R+ D+ V S+ + + +++ S++ FI+ F W++S++++ P++ +A
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 852 LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ---NKILSLFCHELRVPQSQTLR 908
+ + + + + A + + + V F Q K +++R+ Q ++
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL---QGMK 243
Query: 909 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVS 968
+ I I Q + A +L+ T + +
Sbjct: 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 969 LAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVF 1028
+ + RG + ++F+ LD D ++ G++E R+V F YP R +V
Sbjct: 304 VNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPAL 359
Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088
++ NL+I AG++ ALVG SGSGKS++ +LI RFYD G +++DG D+R L SLR ++
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419
Query: 1089 GLVQQEPALFAASIFDNIAYGK-EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGV 1147
LV Q LF ++ +NIAY + E F++ + N T +GE GV
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 1207
LSGGQ+QRIAIARA+L++ IL+LDEATSALD ESE +Q AL+ L + RT++++AHRL
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539
Query: 1208 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
STI D I VV+DG IVE+G+HSEL+++ G Y++L ++Q
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 246 bits (629), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 239/461 (51%), Gaps = 3/461 (0%)
Query: 789 VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF 848
V +R+ D K I + I + +++ + + F ++ +++L L +P +L +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 849 AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 908
L+ + ++A A+ E V I V +F ++ F + ++ L+
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 909 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVS 968
+ F +++ G +L G T + V+
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVA 299
Query: 969 LAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVF 1028
+ + S+ VF +D I + A+P+E +G I++ HV F Y + +
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPIL 357
Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088
KD NL I G++ A VG SG GKS++I LI RFYD T+G+++IDG +I+ SLR +I
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417
Query: 1089 GLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQ 1148
GLVQQ+ LF+ ++ +NI G+ H F+ LP Y T VGERGV+
Sbjct: 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 1208
LSGGQKQR++IAR L NP IL+LDEATSALD ESE ++QEAL+ L + RTT++VAHRLS
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 1209 TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
TI D I V+++G IVE G+H EL+++ GAY L +Q+
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQN 577
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 157/503 (31%), Positives = 235/503 (46%), Gaps = 11/503 (2%)
Query: 105 IACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVG 164
+A W T + + +RKK + F+ + + G ++ V D +D I +
Sbjct: 84 LAQW--TSNKILYDIRKKLYNHLQALSARFY-ANNQVGQVISRVINDVEQTKDFILTGLM 140
Query: 165 NFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAG 224
N T + L + F +L L ++ + P ++ L LT + ++ A
Sbjct: 141 NIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQ 200
Query: 225 IIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWA 284
+ + + V S+ E ++ N L K + +
Sbjct: 201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPI 260
Query: 285 LVFWYAGVFIRNGVTDGGK--AFTAIFSAIVGGMS-LGQSFSNLGAFSKGKAAGYKLMEI 341
+V +G G AF + G + L SF+ L ++ A+ ++ ++
Sbjct: 261 IVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTL---TQSFASMDRVFQL 317
Query: 342 IKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXX 401
I + I ++ + ++ G I+ +V+F Y + I +D ++
Sbjct: 318 IDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGM 375
Query: 402 XXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 461
LI RFYD +G +L+D +IK LR+QIGLV Q+ LF+ T+ ENI
Sbjct: 376 SGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435
Query: 462 LYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 521
L G+P H FI LP GY T+VGERGV+LSGGQKQR++IAR L N
Sbjct: 436 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495
Query: 522 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 581
P IL+LDEATSALD SESI+QEALD L RTT++VAHRLSTI + D + VI+ G +VE
Sbjct: 496 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555
Query: 582 TGTHEELIAKAGAYASLIRFQEM 604
TGTH ELIAK GAY L Q +
Sbjct: 556 TGTHRELIAKQGAYEHLYSIQNL 578
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 160/525 (30%), Positives = 265/525 (50%), Gaps = 19/525 (3%)
Query: 732 FIYIGAGLYAVVAYL--IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLV 789
++ I +YA+ + L +Q + +++ R+R+ + + R VG+FD H +
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGD--I 136
Query: 790 AARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFA 849
+R+ D ++ + + + I + +L + I+ F V +SL+ L PL VL
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 850 QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRR 909
+ + + + + + I E +S + + F + K + F RV +S LR+
Sbjct: 197 VSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFD---RVNES--LRK 251
Query: 910 -----SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVA 964
+ +G+L + + ALI +G L K + T +
Sbjct: 252 VGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 965 ETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD 1024
E + I S +F LD + DDPDA + +RGEIE ++V F+Y +
Sbjct: 312 ELSNQFNMIQMALASAERIFEILDLEE--EKDDPDAVELREVRGEIEFKNVWFSYDKKKP 369
Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
V+ KD I+ GQ ALVG +GSGK++++ L+ RFYD G++++DG DIR++ SL
Sbjct: 370 VL--KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 1085 RLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 1144
R IG+V Q+ LF+ ++ +N+ YG G F+ LP Y+T + +
Sbjct: 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1204
G LS GQ+Q +AI RA L NP IL+LDEATS +D ++E +Q A+ +LM G+T++++A
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
Query: 1205 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
HRL+TI+ D I V++DG IVE G H EL+ + G Y L Q+
Sbjct: 548 HRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQY 591
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/517 (28%), Positives = 244/517 (47%), Gaps = 8/517 (1%)
Query: 89 YFVYLGLIVCFSS---YAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIV 145
Y + LG I +S + + + + V LRK+ E + + VGFFD GDI+
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPH-GDII 137
Query: 146 FSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLY 205
V D + + + + F + T +++ F L+L++++++P +
Sbjct: 138 SRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIV 197
Query: 206 AYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG 265
+ +++ I E+ I+ + + + E K + + ++ K+G KA
Sbjct: 198 SSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQ 257
Query: 266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 325
+ G+ + + +AL+ + G + G T I + L + +
Sbjct: 258 IFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQF 317
Query: 326 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 385
A+ ++ EI+ + +D + L EV G IEFKNV FSY + V+ +D
Sbjct: 318 NMIQMALASAERIFEILDLEEE--KDDPDAVELREVRGEIEFKNVWFSYDKKKPVL--KD 373
Query: 386 FSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 445
+ L+ RFYD + G +L+D +DI+ ++ LR IG+
Sbjct: 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433
Query: 446 VNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLS 505
V Q+ LF+TT+ EN+ YG P FI LP GY T + + G LS
Sbjct: 434 VLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLS 493
Query: 506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 565
GQ+Q +AI RA L NPKIL+LDEATS +D +E +Q A+ +LM G+T++++AHRL+TI
Sbjct: 494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI 553
Query: 566 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
+N D + V++ G++VE G H+ELI K G Y L Q
Sbjct: 554 KNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 243 bits (619), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 167/544 (30%), Positives = 270/544 (49%), Gaps = 26/544 (4%)
Query: 67 NGFGKNQTDIHKMTHEVCKYALYFVYLGLIVC--FSSYAEIACWMYTGERQVSTLRKKYL 124
+GFGK T + V +GL++ +SY C + + V T+R++
Sbjct: 54 DGFGK--------TDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLF 105
Query: 125 EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA 184
++ V FFD + TG ++ ++ D+ V + S + + ++ + ++ F +
Sbjct: 106 GHMMGMPVSFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164
Query: 185 WRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGES 244
W+L+++ I + P ++ A + + ++ + + AEQ + + V + G+
Sbjct: 165 WQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224
Query: 245 KALNSYSDAIQNTLKL-GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVF--IRNGVTDG 301
+ D + N ++L G K A + IA ++ A V YA F + + +T G
Sbjct: 225 VETKRF-DKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVL-YAASFPSVMDSLTAG 282
Query: 302 GKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNG-RCLD 359
T +FS+++ M +S +N+ A F +G AA L I+ + Q+ G R ++
Sbjct: 283 --TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSE----QEKDEGKRVIE 336
Query: 360 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDP 419
G++EF+NVTF+YP R DV R+ ++ P LI RFYD
Sbjct: 337 RATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395
Query: 420 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXX 479
+ G +L+D D++ L LR+Q+ LV+Q LF T+ NI Y +
Sbjct: 396 DEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAAR 455
Query: 480 XX-XHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
FI + NG T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEATSALD S
Sbjct: 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
Query: 539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
E +Q ALD L RT++V+AHRLSTI D + V++ G +VE GTH +L+ G YA L
Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
Query: 599 IRFQ 602
+ Q
Sbjct: 576 HKMQ 579
Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 155/518 (29%), Positives = 262/518 (50%), Gaps = 8/518 (1%)
Query: 732 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 791
+ IG + + + Y S + + +RR + ++ V +FD++ + L +
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLL--S 126
Query: 792 RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 851
R+ D+ V S+ + + +++ S++ FI+ F W++S++++ P++ +A
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVS 186
Query: 852 LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 911
+ + + + + A + + + V F Q F + Q ++
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVS 246
Query: 912 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAP 971
+ I I Q + A +L+ T + ++
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 972 EIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDF 1031
+ RG + ++F+ LD D +E G++E R+V F YP R DV ++
Sbjct: 307 QFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNI 362
Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
NL+I AG++ ALVG SGSGKS++ +LI RFYD G++++DG D+R L SLR ++ LV
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALV 422
Query: 1092 QQEPALFAASIFDNIAYGK-EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 1150
Q LF ++ +NIAY + E F++ + N T +GE GV LS
Sbjct: 423 SQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 1210
GGQ+QRIAIARA+L++ IL+LDEATSALD ESE +Q AL+ L + RT++++AHRLSTI
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 1211 RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
D I VV+DG IVE+G+H++L+ G Y++L ++Q
Sbjct: 543 EKADEIVVVEDGVIVERGTHNDLLEHR-GVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 176/589 (29%), Positives = 292/589 (49%), Gaps = 34/589 (5%)
Query: 26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVN-GFGKNQTDIHKMTHEVC 84
F +L+++ Y L++ ++ VI+ ++ L +++ GFG +++ ++
Sbjct: 13 FKRLWTYIRLYKAGLVV-STIALVINAAADTYMISLLKPLLDEGFGNAESNFLRI----- 66
Query: 85 KYALYFVYLGLIVC--FSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTG 142
L F+ LGL+ S +A C + V +R++ + V FFD ++ TG
Sbjct: 67 ---LPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES-TG 122
Query: 143 DIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAG 202
++ ++ D+ V A S + + + ++ + L + F ++W+L+L+ I V P +AFA
Sbjct: 123 GLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI 182
Query: 203 GLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVG---ESKALNSYSDAI-QNTL 258
+ ++ + + + AEQ + + V SY G E K + S+++ Q T+
Sbjct: 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242
Query: 259 KLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGV-FIRNGVTDGGKAFTAIFSAIVGGMS 317
KL A+ + IA ++ V + A V IR +T G FT +FSA+ G M
Sbjct: 243 KLVS----AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPG--TFTVVFSAMFGLMR 296
Query: 318 LGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE-VNGNIEFKNVTFSYP 375
++ +++ + F +G AA L ++ + + NG+ E VNG ++ K+VTF+Y
Sbjct: 297 PLKALTSVTSEFQRGMAACQTLFGLMDLET----ERDNGKYEAERVNGEVDVKDVTFTYQ 352
Query: 376 SRPD-VIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTL 434
+ + FSI P L RFYD ++G + LD D++
Sbjct: 353 GKEKPALSHVSFSI--PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY 410
Query: 435 QLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
+L LR LV+Q LF TI NI Y + FI +P G
Sbjct: 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL 470
Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
T +GE G LSGGQ+QR+AIARA+L++ +L+LDEATSALD SE +Q ALD L +
Sbjct: 471 DTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK 530
Query: 554 TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
T +V+AHRLSTI D + V+ +G+++E G H +L+A+ GAYA L R Q
Sbjct: 531 TVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 150/506 (29%), Positives = 253/506 (50%), Gaps = 20/506 (3%)
Query: 750 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRIS 809
Y S + N+ ++RR + + V +FD+E L +R+ D+ V A + +
Sbjct: 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLL--SRITYDSEQVAGATSRALV 144
Query: 810 VILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTS 869
I++ S++ + F W++SL+++ P++ A + + + A +
Sbjct: 145 SIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT 204
Query: 870 MIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR----RSLTAGILFGISQFALH 925
A + + + V ++ Q F + QT++ +S+ ++ I+ AL
Sbjct: 205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALF 264
Query: 926 ASEALILWYGVHLVGKGVS--TFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSV 983
A ++ V + ++ TF+ ++ S+ E RG + ++
Sbjct: 265 A---VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKAL---TSVTSEFQRGMAACQTL 318
Query: 984 FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 1043
F +D T D +AE V GE++++ V F Y + + + I G++ AL
Sbjct: 319 FGLMDLETERDNGKYEAERVN---GEVDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVAL 374
Query: 1044 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 1103
VG SGSGKS++ L RFYD +G + +DG D+R L +LR LV Q LF +I
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434
Query: 1104 DNIAYGKEGX-XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162
+NIAY EG F+ +P T +GE G LSGGQ+QR+AIARA
Sbjct: 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494
Query: 1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 1222
+L++ +L+LDEATSALD ESE +Q AL+ L + +T +++AHRLSTI D I VV +G
Sbjct: 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
Query: 1223 RIVEQGSHSELVSRPDGAYSRLLQLQ 1248
I+E+G H++L+++ DGAY++L ++Q
Sbjct: 555 EIIERGRHADLLAQ-DGAYAQLHRIQ 579
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 1248 Q 1248
Q
Sbjct: 241 Q 241
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 364 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 422
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 482
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 601
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 602 Q 602
Q
Sbjct: 241 Q 241
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1248 Q 1248
Q
Sbjct: 239 Q 239
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 364 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 422
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 482
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 601
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 602 Q 602
Q
Sbjct: 239 Q 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1248 Q 1248
Q
Sbjct: 245 Q 245
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 364 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 422
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 482
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 601
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 602 Q 602
Q
Sbjct: 245 Q 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 212 bits (540), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 166/268 (61%), Gaps = 4/268 (1%)
Query: 982 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 1041
++F L T + D P A P+ +G IE +V F+Y + +D + + GQ+
Sbjct: 27 NMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRET--LQDVSFTVMPGQTL 83
Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 1101
ALVG SG+GKS+++ L+ RFYD ++G + IDG+DI ++ SLR IG+V Q+ LF +
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 1102 IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
I DNI YG+ H + A P Y+T VGERG++LSGG+KQR+AIAR
Sbjct: 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221
+LK P I+LLDEATSALD +E +Q +L ++ RTT++VAHRLST+ D I V++D
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 1222 GRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
G IVE+G H L+SR G Y+ + QLQ
Sbjct: 264 GCIVERGRHEALLSR-GGVYADMWQLQQ 290
Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 147/267 (55%), Gaps = 3/267 (1%)
Query: 337 KLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXX 396
+ +++K++ + P G L G IEF+NV FSY + + +D S
Sbjct: 27 NMFDLLKEETEVKDLPGAG-PLRFQKGRIEFENVHFSYADGRETL--QDVSFTVMPGQTL 83
Query: 397 XXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATT 456
L+ RFYD ++G + +D DI + LR IG+V Q+ LF T
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 457 ILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 516
I +NI YG+ H I P GY TQVGERG++LSGG+KQR+AIAR
Sbjct: 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 576
+LK P I+LLDEATSALD +E +Q +L ++ RTT+VVAHRLST+ N D + VI+
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 577 GQVVETGTHEELIAKAGAYASLIRFQE 603
G +VE G HE L+++ G YA + + Q+
Sbjct: 264 GCIVERGRHEALLSRGGVYADMWQLQQ 290
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+I R++ F Y P P V+ + NL I+ G+ +VG +GSGKS++ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 1248 Q 1248
Q
Sbjct: 241 Q 241
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 364 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 422
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 482
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 601
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 602 Q 602
Q
Sbjct: 241 Q 241
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ D+ATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1248 Q 1248
Q
Sbjct: 245 Q 245
Score = 174 bits (441), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 364 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 422
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 482
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ D+ATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 601
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 602 Q 602
Q
Sbjct: 245 Q 245
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
+ ++ +GRT +++A RLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1248 Q 1248
Q
Sbjct: 239 Q 239
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 4/241 (1%)
Query: 364 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 422
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 482
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 601
+ ++ GRT +++A RLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 602 Q 602
Q
Sbjct: 239 Q 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
+ ++ +GRT +++A RLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1248 Q 1248
Q
Sbjct: 245 Q 245
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 4/241 (1%)
Query: 364 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 422
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 482
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 601
+ ++ GRT +++A RLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 602 Q 602
Q
Sbjct: 245 Q 245
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 206 bits (523), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 149/224 (66%), Gaps = 3/224 (1%)
Query: 1013 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072
RHVDFAY ++ +D + + A G SG GKS++ +L+ERFY PTAG++ ID
Sbjct: 5 RHVDFAYDDSEQIL--RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1073 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXX-XXXXXXXXHGFV 1131
G+ I ++L++ R +IG V Q+ A+ A +I +N+ YG EG FV
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1132 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 1191
+P+ T VGERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ESE ++Q+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1192 ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
+ LM+GRTT+++AHRLSTI D I ++ G+I G H+ELV+
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Score = 182 bits (463), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 128/192 (66%), Gaps = 1/192 (0%)
Query: 412 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXX 470
L+ERFY P AG + +D I + L R QIG V+Q+ A+ A TI EN+ YG +
Sbjct: 47 LLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD 106
Query: 471 XXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
SF+ +P+ +T+VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEA
Sbjct: 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 531 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 590
T++LD+ SES+VQ+ALD LM GRTT+V+AHRLSTI + D + I++GQ+ +G H EL+A
Sbjct: 167 TASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Query: 591 KAGAYASLIRFQ 602
YA + Q
Sbjct: 227 THPLYAKYVSEQ 238
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 152/239 (63%), Gaps = 2/239 (0%)
Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
IE V+F+YP + + K N I +G + ALVG +GSGKS++ L+ RFYD G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHG 1129
I GK++ + N S+R IG+V Q+ LF +I NI YGK +
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
F+ ALP + T VG +G++LSGG++QRIAIAR +LK+P I++ DEATS+LD+++E + Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1190 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
A+E L + RT +++AHRLSTI + I ++ G+IVE+G+H +L+ + +G Y+ + +Q
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL-KLNGEYAEMWNMQ 254
Score = 170 bits (430), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 1/239 (0%)
Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGH 423
NIEF +V FSYP + + + + F P L+ RFYD G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXH 483
+ + ++ +R IG+V Q+ LF TI NILYGK +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
FI LP + T VG +G++LSGG++QRIAIAR +LK+PKI++ DEATS+LD+ +E + Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 544 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
+A++ L RT +++AHRLSTI + +++ ++ +G++VE GTH++L+ G YA + Q
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 147/246 (59%), Gaps = 8/246 (3%)
Query: 1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
+ G ++ + V FAYP+RPDV+V + +R G+ ALVG +GSGKS+V AL++ Y PT
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXXX 1124
G++++DGK + + + L ++ V QEP +F S+ +NIAYG +
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 1125 XXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES- 1183
H F+S LP Y T V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1184 ---ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGA 1240
E +L E+ ER R+ +L+ LS + D I ++ G I E G+H +L+ + G
Sbjct: 191 LQVEQLLYESPERY--SRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 247
Query: 1241 YSRLLQ 1246
Y ++Q
Sbjct: 248 YWAMVQ 253
Score = 160 bits (404), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 11/247 (4%)
Query: 361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 420
+ G ++F++V+F+YP+RPDV++ + + L++ Y P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG---KPXXXXXXXXXXX 477
G +LLD + + R+L Q+ V QEP +F ++ ENI YG KP
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 478 XXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
HSFI+ LP GY T+V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA
Sbjct: 131 SGA--HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 188
Query: 538 S----ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 593
S E ++ E+ +R R+ +++ LS + D + ++ G + E GTH++L+ K G
Sbjct: 189 SQLQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG 246
Query: 594 AYASLIR 600
Y ++++
Sbjct: 247 CYWAMVQ 253
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/560 (25%), Positives = 260/560 (46%), Gaps = 21/560 (3%)
Query: 682 PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 741
P W ++++ + V+ + ++A +++ R S+ KT + I L
Sbjct: 20 PYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLI---VALIG 76
Query: 742 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVK 801
V + F S +N +RR + +L + + H SSL+ RL D ++
Sbjct: 77 AVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLIT-RLTNDVTQLQ 134
Query: 802 SAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKG--FAG 859
+ + + ++++ + ++A + ++S +++ P +VL L+ KG
Sbjct: 135 NLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL--LFVWLTKKGNPLFR 192
Query: 860 DTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG---IL 916
++ + + + E + +R V AF + + +E +++LRRS+ + I+
Sbjct: 193 KIQESTDEVNRVVRENLLGVRVVRAFRREE-----YENENFRKANESLRRSIISAFSLIV 247
Query: 917 FGISQFALHASEALI--LWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEII 974
F + F + +I LW+G LV S+ ++ I+
Sbjct: 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV 307
Query: 975 RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLR 1034
R S V L+ I+ D +A + + G + +V+F Y D V+ N
Sbjct: 308 RASASAKRVLEVLNEKPAIEEAD-NALALPNVEGSVSFENVEFRYFENTDPVL-SGVNFS 365
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
++ G A++G +GSGKS+++ LI R DP G+V +D D+R + LK LR I V QE
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 1095 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQK 1154
LF+ +I +N+ +G+E H F+ +LP Y + V G SGGQK
Sbjct: 426 TVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485
Query: 1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD 1214
QR++IARA++K P +L+LD+ TS++D +E + + L+R +G TT ++ ++ T D
Sbjct: 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLAD 545
Query: 1215 CIGVVQDGRIVEQGSHSELV 1234
I V+ +G++ G+H EL+
Sbjct: 546 KILVLHEGKVAGFGTHKELL 565
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/465 (26%), Positives = 212/465 (45%), Gaps = 8/465 (1%)
Query: 141 TGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAF 200
T ++ ++ D +Q+ + + + F+ G+V+ +L+ + I +IP I
Sbjct: 119 TSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL 178
Query: 201 AGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKL 260
L K +ES + + + VR V ++ E ++ A ++ +
Sbjct: 179 LFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRS 238
Query: 261 GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGK--AFTAIFSAIVGGMSL 318
A L I M V W+ GV +RN + G A+T I+ + +
Sbjct: 239 IISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM 298
Query: 319 GQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRP 378
+ N + A+ +++E++ +KP+I ++ N L V G++ F+NV F Y
Sbjct: 299 IGNILNF--IVRASASAKRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFENT 355
Query: 379 DVIIF-RDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLR 437
D ++ +FS+ LI R DP G V +D +D++T++L+
Sbjct: 356 DPVLSGVNFSV--KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLK 413
Query: 438 WLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQV 497
LR I V QE LF+ TI EN+ +G+ H FI LP GY ++V
Sbjct: 414 DLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRV 473
Query: 498 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 557
G SGGQKQR++IARA++K PK+L+LD+ TS++D +E + + L R G TT +
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533
Query: 558 VAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
+ ++ T D + V+ +G+V GTH+EL+ Y + Q
Sbjct: 534 ITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQ 578
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Query: 1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
++G ++ + V FAYP+ P+V V + + G+ ALVG +GSGKS+V AL++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1065 TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXX 1123
T GKV++DG+ + + + L ++ V QEP LF S +NIAYG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
H F+S P Y T VGE G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 1184 ECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
+ +Q L RT +L+ H+LS I +++G + EQG+H +L+ R G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 1242 SRLLQ 1246
+++
Sbjct: 251 RSMVE 255
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 3/242 (1%)
Query: 361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 420
+ G ++F++V+F+YP+ P+V + + + L++ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXXXXXXXXXXX 479
G VLLD + +L Q+ V QEP LF + ENI YG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 480 XXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
H FI+ P GY T+VGE G QLSGGQ+Q +A+ARA+++ P++L+LD+ATSALDAG++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 540 SIVQEAL--DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 597
VQ L RT +++ H+LS + +++G V E GTH +L+ + G Y S
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 598 LI 599
++
Sbjct: 253 MV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 4/245 (1%)
Query: 1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
++G ++ + V FAYP+ P+V V + + G+ ALVG +GSGKS+V AL++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1065 TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXX 1123
T GKV++DG+ + + + L ++ V QEP LF S +NIAYG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
H F+S P Y T VGE G QLSGGQ+Q +A+ARA+++ P +L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1184 ECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
+ +Q L RT +L+ +LS I +++G + EQG+H +L+ R G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 1242 SRLLQ 1246
+++
Sbjct: 251 RSMVE 255
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 3/242 (1%)
Query: 361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 420
+ G ++F++V+F+YP+ P+V + + + L++ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXXXXXXXXXXX 479
G VLLD + +L Q+ V QEP LF + ENI YG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 480 XXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
H FI+ P GY T+VGE G QLSGGQ+Q +A+ARA+++ P++L+LD ATSALDAG++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 540 SIVQEAL--DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 597
VQ L RT +++ +LS + +++G V E GTH +L+ + G Y S
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 598 LI 599
++
Sbjct: 253 MV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 139/245 (56%), Gaps = 4/245 (1%)
Query: 1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
++G ++ + V FAYP+ P+V V + + G+ ALVG +GSGKS+V AL++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1065 TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXX 1123
T GKV++DG+ + + + L ++ V QEP LF S +NIAYG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
H F+S P Y T VGE G QL+ GQ+Q +A+ARA+++ P +L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1184 ECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
+ +Q L RT +L+ +LS I +++G + EQG+H +L+ R G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 1242 SRLLQ 1246
+++
Sbjct: 251 RSMVE 255
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 3/242 (1%)
Query: 361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 420
+ G ++F++V+F+YP+ P+V + + + L++ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXXXXXXXXXXX 479
G VLLD + +L Q+ V QEP LF + ENI YG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 480 XXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
H FI+ P GY T+VGE G QL+ GQ+Q +A+ARA+++ P++L+LD ATSALDAG++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 540 SIVQEAL--DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 597
VQ L RT +++ +LS + +++G V E GTH +L+ + G Y S
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 598 LI 599
++
Sbjct: 253 MV 254
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 12/217 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 1084
+ +L + AGQ ++GASG+GKS++I + PT G V++DG+++ L+ L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
R +IG++ Q L ++ ++F N+A E V P
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 140
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 1201
LSGGQKQR+AIARA+ NP +LL DEATSALD + + E L+ + R G T +
Sbjct: 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTIL 195
Query: 1202 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
L+ H + ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 412 LIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPX 467
L+ER P G VL+D ++ TL +L R QIG++ Q L ++ T+ N+
Sbjct: 53 LLER---PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109
Query: 468 XXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 527
S + G + LSGGQKQR+AIARA+ NPK+LL
Sbjct: 110 DNTPKDEVKRRVTELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 164
Query: 528 DEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 584
DEATSALD + + E L + +G T +++ H + ++ + D VAVI G+++E T
Sbjct: 165 DEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
Query: 585 HEELIA 590
E+ +
Sbjct: 225 VSEVFS 230
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 12/217 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 1084
+ +L + AGQ ++GASG+GKS++I + PT G V++DG+++ L+ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
R +IG++ Q L ++ ++F N+A E V P
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 1201
LSGGQKQR+AIARA+ NP +LL D+ATSALD + + E L+ + R G T +
Sbjct: 164 -----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218
Query: 1202 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
L+ H + ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 219 LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 412 LIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPX 467
L+ER P G VL+D ++ TL +L R QIG++ Q L ++ T+ N+
Sbjct: 76 LLER---PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132
Query: 468 XXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 527
S + G + LSGGQKQR+AIARA+ NPK+LL
Sbjct: 133 DNTPKDEVKRRVTELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187
Query: 528 DEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 584
D+ATSALD + + E L + +G T +++ H + ++ + D VAVI G+++E T
Sbjct: 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
Query: 585 HEELIA 590
E+ +
Sbjct: 248 VSEVFS 253
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 19/216 (8%)
Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089
+ NL+I+ G+ AL+G SGSGKS+++ I Y PT+GK+ D KD+ L K +G
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN--VG 78
Query: 1090 LVQQEPALFA-ASIFDNIAYG----KEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 1144
LV Q AL+ +++ NIA+ K H + L N Y
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH--IDKLLNRYPW---- 132
Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVL 1202
QLSGGQ+QR+AIARA++K P +LLLDE S LDA ++ L+RL + G TTV
Sbjct: 133 ---QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 1203 VAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
V H + + D I V+++G I++ G+ E+ +P
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 417 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG----KPXXXXX 471
Y P +G + D D+ L + +GLV Q AL+ T+ +NI + K
Sbjct: 53 YKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEI 110
Query: 472 XXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 531
H I L N Y Q LSGGQ+QR+AIARA++K P++LLLDE
Sbjct: 111 DKKVREVAKMLH--IDKLLNRYPWQ-------LSGGQQQRVAIARALVKEPEVLLLDEPL 161
Query: 532 SALDAGSESIVQEALDRLM--VGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
S LDA V+ L RL +G TTV V H + + D +AVI++G++++ GT +E+
Sbjct: 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Query: 589 IAK 591
K
Sbjct: 222 YYK 224
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 1084
+ +L + AGQ ++GASG+GKS++I + PT G V++DG+++ L+ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
R +IG + Q L ++ ++F N+A E V P
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 1201
LSGGQKQR+AIARA+ NP +LL D+ATSALD + + E L+ + R G T +
Sbjct: 164 -----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218
Query: 1202 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
L+ H ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 219 LITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 15/186 (8%)
Query: 412 LIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPX 467
L+ER P G VL+D ++ TL +L R QIG + Q L ++ T+ N+
Sbjct: 76 LLER---PTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLEL 132
Query: 468 XXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 527
S + G + LSGGQKQR+AIARA+ NPK+LL
Sbjct: 133 DNTPKDEVKRRVTELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187
Query: 528 DEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 584
D+ATSALD + + E L + +G T +++ H ++ + D VAVI G+++E T
Sbjct: 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDT 247
Query: 585 HEELIA 590
E+ +
Sbjct: 248 VSEVFS 253
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 19/240 (7%)
Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
I +R+ F + +R D I G A+VG G GKSS+++ + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHG 1129
I G + V Q+ + S+ +NI +G +
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQ 1188
LP+ +T +GE+GV LSGGQKQR+++ARAV N I L D+ SA+DA + + +
Sbjct: 110 L-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 1189 EAL--ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
+ + +++ +T +LV H +S + VD I V+ G+I E GS+ EL++R DGA++ L+
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 439 LRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVG 498
++ + V Q+ + ++ ENIL+G + +LP+G T++G
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD-LEILPSGDRTEIG 122
Query: 499 ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL---DRLMVGRTT 555
E+GV LSGGQKQR+++ARA+ N I L D+ SA+DA + E + ++ +T
Sbjct: 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTR 182
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
++V H +S + VD + V+ G++ E G+++EL+A+ GA+A +R
Sbjct: 183 ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 90.9 bits (224), Expect = 4e-18, Method: Composition-based stats.
Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 13/211 (6%)
Query: 1043 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-AS 1101
L+G +G+GKS + LI P G+V ++G DI L + R IG V Q+ ALF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 1102 IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
++ NIAYG ++ L + + +LSGG++QR+A+AR
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-------LDRKPARLSGGERQRVALAR 139
Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL--VAHRL-STIRGVDCIGV 1218
A++ P +LLLDE SA+D +++ VL E L + R + V H L D + V
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199
Query: 1219 VQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
+ +GRIVE+G EL S +G + L ++
Sbjct: 200 MLNGRIVEKGKLKELFSAKNGEVAEFLSARN 230
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 16/200 (8%)
Query: 412 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXX 470
LI P+ G V L+ DI L R IG V Q+ ALF ++ NI YG
Sbjct: 43 LIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYGLRNVER 100
Query: 471 XXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
I L + + +LSGG++QR+A+ARA++ P++LLLDE
Sbjct: 101 VERDRRVREMAEKLGIAHL-------LDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153
Query: 531 TSALDAGSESIVQEALDRLMVGRTTVVVAH----RLSTIRNVDTVAVIQQGQVVETGTHE 586
SA+D ++ ++ E L R + V + H + D VAV+ G++VE G +
Sbjct: 154 LSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK 212
Query: 587 ELI-AKAGAYASLIRFQEMV 605
EL AK G A + + ++
Sbjct: 213 ELFSAKNGEVAEFLSARNLL 232
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 31/227 (13%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSL 1084
V K N+ IR G+ ++G SGSGKS+ + + D G+++IDG +++ NL +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1085 RLKIGLVQQEPALFA-ASIFDNIAYGK-----------EGXXXXXXXXXXXXXXXHGFVS 1132
R ++G+V Q LF ++ +NI E H +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 135
Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
P++ LSGGQ QR+AIARA+ P I+L DE TSALD E + ++
Sbjct: 136 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 1193 RLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
+L G T V+V H + R V D + + G I+E+G +L RP
Sbjct: 183 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 229
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 418 DPNAGHVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXXXXXX 474
D + G +++D +++K L +R+++G+V Q LF T+L NI
Sbjct: 54 DFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP----MKVRK 109
Query: 475 XXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
+ L G + LSGGQ QR+AIARA+ PKI+L DE TSAL
Sbjct: 110 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 169
Query: 535 DAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
D V + +L G T VVV H + R V D V + G ++E G E+L +
Sbjct: 170 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 31/227 (13%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSL 1084
V K N+ IR G+ ++G SGSGKS+ + + D G+++IDG +++ NL +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1085 RLKIGLVQQEPALFA-ASIFDNIAYGK-----------EGXXXXXXXXXXXXXXXHGFVS 1132
R ++G+V Q LF ++ +NI E H +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 156
Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
P++ LSGGQ QR+AIARA+ P I+L DE TSALD E + ++
Sbjct: 157 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 1193 RLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
+L G T V+V H + R V D + + G I+E+G +L RP
Sbjct: 204 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 12/185 (6%)
Query: 412 LIERFYDPNAGHVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXX 468
L+E F + G +++D +++K L +R+++G+V Q LF T+L NI
Sbjct: 72 LLEDF---DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP--- 125
Query: 469 XXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 528
+ L G + LSGGQ QR+AIARA+ PKI+L D
Sbjct: 126 -MKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184
Query: 529 EATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHE 586
E TSALD V + +L G T VVV H + R V D V + G ++E G E
Sbjct: 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPE 244
Query: 587 ELIAK 591
+L +
Sbjct: 245 DLFDR 249
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
+ +L++ +G+ ++G +G+GK+ + LI F+ P +G++++DGKD+ +L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 1088 IGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
I V Q +LF ++ N+ +G +A + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--------MRMKKIKDPKRVLDTARDLKIEHLLDRNP 125
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVL-VA 1204
+ LSGG++QR+A+ARA++ NP ILLLDE SALD ++ +E L L + + TVL +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 1205 HRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
H + R + D I VV DG++++ G E+ +P
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 412 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXX 470
LI F+ P++G +LLD D+ L + I V Q +LF + +N+ +G
Sbjct: 45 LIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102
Query: 471 XXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
LL T LSGG++QR+A+ARA++ NPKILLLDE
Sbjct: 103 KDPKRVLDTARDLKIEHLLDRNPLT--------LSGGEQQRVALARALVTNPKILLLDEP 154
Query: 531 TSALDAGSESIVQEALDRLMVGR--TTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 587
SALD ++ +E L L T + + H + R + D +AV+ G++++ G EE
Sbjct: 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214
Query: 588 LIAKA--GAYASLIRFQEMVRNR 608
+ K G AS + F+ +++ R
Sbjct: 215 IFEKPVEGRVASFVGFENVLKGR 237
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 89.7 bits (221), Expect = 1e-17, Method: Composition-based stats.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
I+L++V Y +++ K+ NL I+ G+ +++G SGSGKS+++ +I PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 1113
V ID L+ L R KIG V Q+ L + +N+ A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1114 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173
F + PN QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 1174 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
+ T ALD+++ + + L++L G+T V+V H ++ R + I ++DG +
Sbjct: 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 66.6 bits (161), Expect = 8e-11, Method: Composition-based stats.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 419 PNAGHVLLDNVDIKTLQ----LRWLRDQIGLVNQEPALFAT-TILENILYGKPXXXXXXX 473
P G V +DN+ L + RD+IG V Q+ L T LEN+ P
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRG 114
Query: 474 XXXXXXXXXHSFITL-LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
+ L + + QLSGGQ+QR+AIARA+ NP I+L D+ T
Sbjct: 115 AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTG 174
Query: 533 ALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV 579
ALD+ + + + L +L G+T VVV H ++ R + + ++ G+V
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 89.4 bits (220), Expect = 1e-17, Method: Composition-based stats.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
I+L++V Y +++ K+ NL I+ G+ ++ G SGSGKS+ + +I PT G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 1113
V ID L+ L R KIG V Q+ L + +N+ A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 1114 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173
F + PN QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 1174 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
E T ALD+++ + + L++L G+T V+V H ++ R + I ++DG +
Sbjct: 171 EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 419 PNAGHVLLDNVDIKTLQ----LRWLRDQIGLVNQEPALFAT-TILENILYGKPXXXXXXX 473
P G V +DN+ L + RD+IG V Q+ L T LEN+ P
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRG 114
Query: 474 XXXXXXXXXHSFITLLPNGYSTQVGERGV-----QLSGGQKQRIAIARAMLKNPKILLLD 528
+ L ++ ER QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 115 AXSGEERRKRALECL----KXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 529 EATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV 579
E T ALD+ + + + L +L G+T VVV H ++ R + + ++ G+V
Sbjct: 171 EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
IE V+ YP V + + +IR G+ L+G SGSGK++++ LI PT G V
Sbjct: 15 IEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXH 1128
I GK R +L + +GLV Q ALF +++DN+++G
Sbjct: 73 WIGGK--RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
F+ A + P +LSGGQ+QR+A+ARA+ P +LL DE +A+D + L+
Sbjct: 131 RFMRLESYANRFPH-----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 1189 EALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
+ ++ G T+V V H + + D + V+ +G + + G+ E+ +P
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 15/188 (7%)
Query: 412 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXX 470
LI P G V + + L + + +GLV Q ALF T+ +N+ +G
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRV 117
Query: 471 XXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
F+ L Y+ + +LSGGQ+QR+A+ARA+ P++LL DE
Sbjct: 118 PKDEMDARVRELLRFMRL--ESYANRFPH---ELSGGQQQRVALARALAPRPQVLLFDEP 172
Query: 531 TSALDAGS----ESIVQEALDRLMVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTH 585
+A+D + V++ D + G T+V V H + + D V V+ +G V + GT
Sbjct: 173 FAAIDTQIRRELRTFVRQVHDEM--GVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230
Query: 586 EELIAKAG 593
EE+ K G
Sbjct: 231 EEVYEKPG 238
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
++ +L I G+ + G +GSGKS+++ ++ +PT+G V+ DG+ R +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---RKKGYEIRRN 79
Query: 1088 IGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGER 1145
IG+ Q P FA +FD +A+ + FV +++K V
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-FVGLDFDSFKDRVP-- 136
Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVA 1204
LSGG+K+R+AIA ++ P IL+LDE LD E + L +E+ G+T +L++
Sbjct: 137 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 1205 HRLST-IRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY--SRLLQLQH 1249
H + T I VD + V++ G+ V G+ E + + D + S++L ++
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRR 243
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-MVGRTTVVVAHRL 562
LSGG+K+R+AIA ++ P IL+LDE LD ++ + +++ +G+T ++++H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 563 STIRN-VDTVAVIQQGQVVETGTHEELIAK 591
T+ N VD V V+++G+ V GT E + K
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
++ +L I G+ + G +GSGKS+++ ++ +PT+G V+ DG+ R +R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---RKKGYEIRRN 81
Query: 1088 IGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGER 1145
IG+ Q P FA +FD +A+ + FV +++K V
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-FVGLDFDSFKDRVP-- 138
Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVA 1204
LSGG+K+R+AIA ++ P IL+LDE LD E + L +E+ G+T +L++
Sbjct: 139 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 1205 HRLST-IRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY--SRLLQLQH 1249
H + T I VD + V++ G+ V G+ E + + D + S++L ++
Sbjct: 198 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRR 245
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-MVGRTTVVVAHRL 562
LSGG+K+R+AIA ++ P IL+LDE LD ++ + +++ +G+T ++++H +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 563 STIRN-VDTVAVIQQGQVVETGTHEELIAK 591
T+ N VD V V+++G+ V GT E + K
Sbjct: 201 ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
++L++V Y +++ K+ NL I+ G+ +++G SGSGKS+++ +I PT G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 1113
V ID L+ L R KIG V Q+ L + +N+ A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1114 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173
F + PN QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 1174 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
+ T ALD+++ + + L++L G+T V+V H ++ R + I ++DG +
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 419 PNAGHVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT-TILENILYGKPXXXXXXX 473
P G V +DN+ L L RD+IG V Q+ L T LEN+ P
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRG 114
Query: 474 XXXXXXXXXHSFITLLPNGYSTQ-VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
+ L + + QLSGGQ+QR+AIARA+ NP I+L D+ T
Sbjct: 115 AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTW 174
Query: 533 ALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV 579
ALD+ + + + L +L G+T VVV H ++ R + + ++ G+V
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090
NL I+ G+ L+G SG GK++ + +I +PT G++ +D+ L K I +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR--NISM 88
Query: 1091 VQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF--VSALPNAYKTPVGERGV 1147
V Q A++ ++++NIA+ + + L N Y
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 141
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 1205
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA+ ++ +++L + TT+ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 1206 -RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
++ + D I V+ G++++ GS +E+ RP+ +
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH 560
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA ++ + +L + TT+ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 561 -RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA--YASLIRFQEM 604
++ + D +AV+ +GQ+++ G+ E+ + + A+ I EM
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEM 248
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090
NL I+ G+ L+G SG GK++ + +I +PT G++ +D+ L K I +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR--NISM 87
Query: 1091 VQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF--VSALPNAYKTPVGERGV 1147
V Q A++ ++++NIA+ + + L N Y
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 1205
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA+ ++ +++L + TT+ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 1206 -RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
++ + D I V+ G++++ GS +E+ RP+ +
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH 560
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA ++ + +L + TT+ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 561 -RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA--YASLIRFQEM 604
++ + D +AV+ +GQ+++ G+ E+ + + A+ I EM
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEM 247
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 11/214 (5%)
Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
+ ++ G+ AL+G SG GK++ + ++ Y PT+G++ D D+ ++ ++G+V
Sbjct: 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREVGMV 80
Query: 1092 QQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 1150
Q AL+ ++F+NIA+ A + + QLS
Sbjct: 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI-----ARKLLIDNLLDRKPTQLS 135
Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAH-RL 1207
GGQ+QR+A+ARA++K P +LL DE S LDA +++ ++ L + G T+V V H +
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
Query: 1208 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
+ I V G++V+ G+ E+ P +
Sbjct: 196 EAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 417 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXXXXXXX 475
Y P +G + D+V + + ++ ++G+V Q AL+ T+ ENI + P
Sbjct: 53 YKPTSGEIYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAF--PLRARRISKD 108
Query: 476 XXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
LL + + QLSGGQ+QR+A+ARA++K PK+LL DE S LD
Sbjct: 109 EVEKRVVEIARKLL---IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 536 AGSESIVQEALDRLM--VGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
A I++ + L +G T+V V H + + +AV QG++V+ GT +E+
Sbjct: 166 ANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063
+T G+ L +F+ P V KD N +I GQ A+ G++G+GK+S++ +I +
Sbjct: 33 KTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXX 1120
P+ GK+ G+ I Q + +I +NI +Y +
Sbjct: 90 PSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRS 131
Query: 1121 XXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
+S +GE G+ LSGGQ+ RI++ARAV K+ + LLD LD
Sbjct: 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Query: 1181 AESEC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
+E + + + +LM +T +LV ++ ++ D I ++ +G G+ SEL + RPD
Sbjct: 192 VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 555
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++V ++ ++ D + ++ +G GT EL
Sbjct: 213 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
I Q + +I +NI +G +S +GE G
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 140
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 1205
+ LSGGQ+ RI++ARAV K+ + LLD LD +E + + + +LM +T +LV
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 234
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 555
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 136 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 195
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++V ++ ++ D + ++ +G GT EL
Sbjct: 196 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
I Q + +I +NI +G +S +GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 128
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 1205
+ LSGGQ+ RI++ARAV K+ + LLD LD +E + + + +LM +T +LV
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 222
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 555
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 183
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++V ++ ++ D + ++ +G GT EL
Sbjct: 184 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063
+T G+ L +F+ P V KD N +I GQ A+ G++G+GK+S++ +I +
Sbjct: 33 KTSNGDDSLFFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXX 1120
P+ GK+ G+ I Q + +I +NI +Y +
Sbjct: 90 PSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRS 131
Query: 1121 XXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
+S +GE G+ LSGGQ+ RI++ARAV K+ + LLD LD
Sbjct: 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Query: 1181 AESEC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
+E + + + +LM +T +LV ++ ++ D I ++ +G G+ SEL + RPD
Sbjct: 192 VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 555
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++V ++ ++ D + ++ +G GT EL
Sbjct: 213 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 1133
+ + Q + +I +NI +G ++
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 1192
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1193 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
+LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 442 QIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERG 501
++ +Q + TI ENI++G IT +T +GE G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITKFAEQDNTVLGEGG 158
Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQEALDRLMVGRTTVVVAH 560
V LSGGQ+ RI++ARA+ K+ + LLD LD E + + + +LM +T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++ +R D + ++ QG GT EL
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 1133
+ + Q + +I +NI +G ++
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 1192
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1193 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
+LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 442 QIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERG 501
++ +Q + TI ENI++G IT +T +GE G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITKFAEQDNTVLGEGG 158
Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQEALDRLMVGRTTVVVAH 560
V LSGGQ+ RI++ARA+ K+ + LLD LD E + + + +LM +T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++ +R D + ++ QG GT EL
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 19/237 (8%)
Query: 1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063
+T G+ L +F+ P V KD N +I GQ A+ G++G+GK+S++ +I +
Sbjct: 33 KTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXX 1123
P+ GK+ G+ I Q + +I +NI G
Sbjct: 90 PSEGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKA 136
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
+S +GE G+ LSGGQ+ RI++ARAV K+ + LLD LD +
Sbjct: 137 CQLEED-ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 195
Query: 1184 EC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
E + + + +LM +T +LV ++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 196 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 555
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 154 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++V ++ ++ D + ++ +G GT EL
Sbjct: 214 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 30/229 (13%)
Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR---RLNL 1081
VV + N+ I G+ ++G SG+GK++ + +I P+ G++ D + + +L +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 1082 KSLRLKIGLVQQEPALFAA-SIFDNIAY-------GKEGXXXXXXXXXXXXXXXHGFVSA 1133
KIG+V Q AL+ + F+NIA+ KE H ++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE-EIRKRVEEVAKILDIHHVLNH 136
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE----SECVLQE 1189
P +LSGGQ+QR+A+ARA++K+P++LLLDE S LDA + +++E
Sbjct: 137 FPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 1190 ALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
RL G T ++V+H + I + D +GV+ G++V+ G +L P
Sbjct: 186 VQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 62/91 (68%), Gaps = 7/91 (7%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDA----GSESIVQEALDRLMVGRTTVVV 558
+LSGGQ+QR+A+ARA++K+P +LLLDE S LDA + ++V+E RL G T +VV
Sbjct: 140 ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVV 197
Query: 559 AHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
+H + I + D V V+ +G++V+ G E+L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 1133
+ + Q + +I +NI G ++
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 1192
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1193 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
+LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 486 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQE 544
IT +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD E + +
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
+ +LM +T ++V ++ +R D + ++ QG GT EL
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 1133
+ + Q + +I +NI G ++
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 1192
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1193 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
+LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 486 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQE 544
IT +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD E + +
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
+ +LM +T ++V ++ +R D + ++ QG GT EL
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 14/214 (6%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DIRRLNLKSLR 1085
K N+ I+ G+ A++G +G GKS++ P++G+++ D K D R + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1086 LKIGLVQQEP--ALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
IG+V Q+P LF+AS++ ++++G +AL +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD------NALKRTGIEHLK 137
Query: 1144 ERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTT 1200
++ LS GQK+R+AIA ++ P +L+LDE T+ LD + + L + + G T
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 1201 VLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233
++ H + + D + V+++GR++ QG+ E+
Sbjct: 198 IIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 419 PNAGHVLLDN--VDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPXXXXXXXX 474
P++G +L DN +D + LR+ IG+V Q+P LF+ ++ +++ +G
Sbjct: 60 PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDE 119
Query: 475 XXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
L G + LS GQK+R+AIA ++ PK+L+LDE T+ L
Sbjct: 120 IRKRVDN-----ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 535 DAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 591
D S + + L + +G T ++ H + + D V V+++G+V+ G +E+ A+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
+VVV KD NL I G+ VG SG GKS+++ +I T+G + I K R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1084 LRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXXXXXXXXHGFVSALP 1135
+G+V Q AL+ S+ +N+++G KE H + P
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKP 131
Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
A LSGGQ+QR+AI R ++ P++ LLDE S LDA ++ + RL
Sbjct: 132 KA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 1196 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
+ GRT + V H ++ + D I V+ GR+ + G EL P
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAH- 560
LSGGQ+QR+AI R ++ P + LLDE S LDA ++ + RL +GRT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++ + D + V+ G+V + G EL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
+VVV KD NL I G+ VG SG GKS+++ +I T+G + I K R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1084 LRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXXXXXXXXHGFVSALP 1135
+G+V Q AL+ S+ +N+++G KE H + P
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKP 131
Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
A LSGGQ+QR+AI R ++ P++ LLDE S LDA ++ + RL
Sbjct: 132 KA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 1196 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
+ GRT + V H ++ + D I V+ GR+ + G EL P
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAH- 560
LSGGQ+QR+AI R ++ P + LLDE S LDA ++ + RL +GRT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++ + D + V+ G+V + G EL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 30/229 (13%)
Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR---RLNL 1081
VV + N+ I G+ ++G SG+GK++ + +I P+ G++ D + + +L +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 1082 KSLRLKIGLVQQEPALFAA-SIFDNIAY-------GKEGXXXXXXXXXXXXXXXHGFVSA 1133
KIG+V Q AL+ + F+NIA+ KE H ++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE-EIRKRVEEVAKILDIHHVLNH 136
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE----SECVLQE 1189
P +LSG Q+QR+A+ARA++K+P++LLLDE S LDA + +++E
Sbjct: 137 FPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 1190 ALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
RL G T ++V+H + I + D +GV+ G++V+ G +L P
Sbjct: 186 VQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 61/91 (67%), Gaps = 7/91 (7%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDA----GSESIVQEALDRLMVGRTTVVV 558
+LSG Q+QR+A+ARA++K+P +LLLDE S LDA + ++V+E RL G T +VV
Sbjct: 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVV 197
Query: 559 AHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
+H + I + D V V+ +G++V+ G E+L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 80.1 bits (196), Expect = 7e-15, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 19/225 (8%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRL 1079
DV KD +L I+ G+ L+G SG GK++ + I +PT G++ I+ + + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1080 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYG---KEGXXXXXXXXXXXXXXXHGFVSALP 1135
+ + V Q AL+ +++DNIA+ ++ G L
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL- 136
Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
+ +LSGGQ+QR+A+ RA+++ P + L DE S LDA+ + L++L
Sbjct: 137 -------NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 1196 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
R G TT+ V H ++ D I V G + + G+ E+ +P
Sbjct: 190 RQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKP 234
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-- 549
G + + + +LSGGQ+QR+A+ RA+++ PK+ L DE S LDA + L +L
Sbjct: 131 GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 550 MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEELIAK 591
+G TT+ V H ++ D +AV +G++ + GT +E+ K
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYK 233
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 1087 KIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
I Q + +I +NI +Y + +S +G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNIVLG 124
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVL 1202
E G+ LSGGQ+ RI++ARAV K+ + LLD LD +E + + + +LM +T +L
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
V ++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 185 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 221
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 555
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 182
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++V ++ ++ D + ++ +G GT EL
Sbjct: 183 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
+VVV KD NL I G+ VG SG GKS+++ +I T+G + I K R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1084 LRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXXXXXXXXHGFVSALP 1135
+G+V Q AL+ S+ +N+++G KE H + P
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKP 131
Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
A LSGGQ+QR+AI R ++ P++ LLD+ S LDA ++ + RL
Sbjct: 132 KA-----------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLH 180
Query: 1196 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
+ GRT + V H ++ + D I V+ GR+ + G EL P
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAH- 560
LSGGQ+QR+AI R ++ P + LLD+ S LDA ++ + RL +GRT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++ + D + V+ G+V + G EL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 23/230 (10%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGF 1130
+ + Q + +I +NI +Y +
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIGVSYDE-----YRYKSVVKACQLQQD 141
Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQE 1189
++ T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V +
Sbjct: 142 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
Query: 1190 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
+ +LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 202 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 251
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 486 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQE 544
IT +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD E + +
Sbjct: 142 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL-------IAKAGAYAS 597
+ +LM +T ++V ++ +R D + ++ QG GT EL +K Y +
Sbjct: 202 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDT 261
Query: 598 LIRFQEMVRN 607
+F E R+
Sbjct: 262 FDQFTEERRS 271
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 13/226 (5%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRL 1079
+V ++ +L ++ G+ L+G SG GK++ + +I +P+ G++ I K + + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 1080 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAY 1138
+ I +V Q AL+ +++DNIA+ + +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134
Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 1196
+ P +LSGGQ+QR+A+ RA+++ P + L+DE S LDA+ ++ L++L R
Sbjct: 135 RKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 1197 GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
G TT+ V H ++ + D I V+ G + + GS E+ +P +
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-- 549
G + + + +LSGGQ+QR+A+ RA+++ P++ L+DE S LDA ++ L +L
Sbjct: 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 550 MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEELIAK 591
+G TT+ V H ++ + D +AV+ +G + + G+ +E+ K
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 15/230 (6%)
Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
IEL V F Y V KD N G+ +VG +GSGK++++ ++ AG++
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
+DG LR +G V Q P+ + A++ +++A+ E
Sbjct: 68 FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
V A P+ LSGGQKQR+AIA + ++ L LDE S LD S+ +
Sbjct: 125 LELVGLSGLAAADPL-----NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 1188 QEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
+ LE L G+ +LV H L + +D I + +G I GS E V R
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAH 560
+ LSGGQKQR+AIA + ++ + L LDE S LD S+ + + L+ L G+ ++V H
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEELIAK 591
L + ++D + I G + G+ EE + +
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 16/214 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
+I Q + +I +NI +G +S +GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 158
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 1205
+ LS GQ+ +I++ARAV K+ + LLD LD +E + + + +LM +T +LV
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 555
+GE G+ LS GQ+ +I++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 154 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++V ++ ++ D + ++ +G GT EL
Sbjct: 214 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 17/233 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
H+ S + V D +L + G+ ++GASG GK++++ + F P +G++ + G
Sbjct: 6 HIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG 65
Query: 1074 KDI--RRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG---KEGXXXXXXXXXXXXXXX 1127
K I + NL ++G + QE LF +++ NIAYG +G
Sbjct: 66 KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLEL 125
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
G +S L Y +LSGGQ+QR A+ARA+ +P ++LLDE SALD + +
Sbjct: 126 TG-ISELAGRYPH-------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177
Query: 1188 QEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
+E + +R G++ V V+H R ++ D I V++ GRI++ S EL +P
Sbjct: 178 REDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 416 FYDPNAGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPXXXXXX 472
F P++G + L I K L ++G + QE LF T+ NI YG
Sbjct: 53 FEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG---LGNGK 109
Query: 473 XXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
+ + L G S G +LSGGQ+QR A+ARA+ +P+++LLDE S
Sbjct: 110 GRTAQERQRIEAMLEL--TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFS 167
Query: 533 ALDAGSESIVQEALDRLMV--GRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
ALD ++E + + G++ V V+H R ++ D +AV++QG++++T + EL
Sbjct: 168 ALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1087 KIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
I Q + +I +NI +Y + +S +G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVL 1202
E G+ LS GQ+ +I++ARAV K+ + LLD LD +E + + + +LM +T +L
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
V ++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 251
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 555
+GE G+ LS GQ+ +I++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
++V ++ ++ D + ++ +G GT EL
Sbjct: 213 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 21/210 (10%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
+ K +L ++ G+ +++GASGSGKS+++ ++ PT GKV ++GK++ N K L L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1087 ----KIGLVQQ----EPALFAAS--IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPN 1136
K+G V Q P L A I + GK G
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG------- 131
Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
+ + +LSGG++QR+AIARA+ P +L DE T LD+ + + + ++
Sbjct: 132 ---DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 1197 GRTT-VLVAHRLSTIRGVDCIGVVQDGRIV 1225
G T+ V+V H ++DG++V
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVV 218
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 551
G ++ + +LSGG++QR+AIARA+ P +L DE T LD+ + V + ++
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 552 GRTTVV-VAHRLSTIRNVDTVAVIQQGQVV 580
G T++V V H ++ G+VV
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 2/211 (0%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
+ ++ + I GQ L+G +GSGKS++++ R + T G++ IDG + L+ R
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
G++ Q+ +F+ + N+ + P + + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 1206
LS G KQ + +AR+VL ILLLDE ++ LD + +++ L++ T +L R
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213
Query: 1207 LSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
+ + D V+++ ++ + S EL P
Sbjct: 214 IEAMLECDQFLVIEENKVRQYDSILELYHYP 244
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXX 481
G + +D V ++ L R G++ Q+ +F+ T +N L
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVG 133
Query: 482 XHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
S I P + + G LS G KQ + +AR++L KILLLDE ++ LD + I
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 542 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 579
++ L + T ++ R+ + D VI++ +V
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 21/230 (9%)
Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT----AGKVMIDGKDI---RRLNLKS 1083
+L I A+VG S SGKS++I + + P +G+V+ GKD+ R L+
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 1084 LRLK-IGLVQQ------EPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPN 1136
+R K I LV Q P + F + G V P
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEA-HGVRWSHSELIEKASEKLRMVRLNPE 145
Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESECVLQEALERL 1194
A + +QLSGG KQR+ IA A+L +P +L+LDE TSALD ++ + +
Sbjct: 146 AV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKK 202
Query: 1195 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
M T + V H ++ + D + V+ G +VE S ++ P Y+R
Sbjct: 203 MLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTR 252
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES-IVQEALDRLMVGRTTVV-VA 559
+QLSGG KQR+ IA A+L +P +L+LDE TSALD +++ I+Q + + + T++ V
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVT 212
Query: 560 HRLSTIRNV-DTVAVIQQGQVVE 581
H ++ + D VAVI G +VE
Sbjct: 213 HDIAVAAELADKVAVIYGGNLVE 235
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 29/232 (12%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--------- 1077
V K +L+ RAG +++G+SGSGKS+ + I P+ G ++++G++I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1078 ----RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVS 1132
+ L+ LR ++ +V Q L++ ++ +N+
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP--------IQVLGLSKHDARER 132
Query: 1133 ALPNAYKTPVGERG-----VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
AL K + ER V LSGGQ+QR++IARA+ P +LL DE TSALD E +
Sbjct: 133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 1188 QEALERLM-RGRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSELVSRP 1237
+++L G+T V+V H + R V + + G+I E+G ++ P
Sbjct: 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP 244
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 435 QLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
QLR LR ++ +V Q L++ T+LEN++ + L G
Sbjct: 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP----IQVLGLSKHDARERALKYLAKVGI 142
Query: 494 STQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 551
+ G+ V LSGGQ+QR++IARA+ P +LL DE TSALD +V E L R+M
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP---ELVGEVL-RIMQQ 198
Query: 552 ----GRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEEL 588
G+T VVV H + R+V + V + QG++ E G E++
Sbjct: 199 LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 21/218 (9%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RL 1086
K +L++ GQ L+GA+G+GK++ ++ I GK++ +G+DI + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 1087 KIGLVQQEPALFAA-SIFDNIAYG------KEGXXXXXXXXXXXXXXXHGFVSALPNAYK 1139
I LV + +F ++++N+ G KEG ++ +L K
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLE-----------WIFSLFPRLK 130
Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
+ + G LSGG++Q +AI RA+ P +L DE + L + E ++++ + T
Sbjct: 131 ERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 1200 TVLVAHR--LSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
T+L+ + L ++ V++ G+IV +G SEL+
Sbjct: 191 TILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 501 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH 560
G LSGG++Q +AI RA+ PK+L DE + L S V E + ++ TT+++
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 561 R--LSTIRNVDTVAVIQQGQVVETGTHEELI 589
+ L ++ V++ GQ+V G EL+
Sbjct: 197 QNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-M 550
G ++ +R S G +++ IARA++ NP++ +LDE TS LD + V++ L +
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 551 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVR 606
G T +V +H + + + D +A+I G +VETGT EEL + A F+E+V+
Sbjct: 195 EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 17/217 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
+ K + I G+ L+G +G+GK++ + +I P++G V + GK++ +R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 1087 KIGLVQQEPALFAASIFDNIAYGK--EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 1144
I + +E + I Y + G ++ L K +
Sbjct: 89 LISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK----D 142
Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA----ESECVLQEALERLMRGRTT 1200
R S G +++ IARA++ NP + +LDE TS LD E +L++A + G T
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTI 199
Query: 1201 VLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
++ +H + + + D I ++ +G IVE G+ EL R
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 25/216 (11%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 1091
+RAG+ LVG +G+GKS+++A R T+GK + G+ + + L L + L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
QQ+ FA ++ + + + AL A +G QLSG
Sbjct: 80 QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 1152 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
G+ QR+ +A VL+ NPA +LLLD+ ++LD + L + L L +G V+
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 1204 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
+H L+ T+R +++ G+++ G E+++ P+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 9/103 (8%)
Query: 496 QVGERGVQLSGGQKQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDR 548
++G QLSGG+ QR+ +A +L+ NP ++LLLD+ ++LD +S + + L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSA 178
Query: 549 L-MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
L G V+ +H L+ T+R+ +++ G+++ +G EE++
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 551
Y + GE LSGGQ + + I RA++ NPK++++DE + + G + I L+
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 552 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 589
G T +++ HRL + N +D + V+ GQ++ G EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 22/218 (10%)
Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
++ + G ++G +GSGKS++I +I F G+V + KDI L G+V
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIV 85
Query: 1092 Q--QEPA-LFAASIFDNIAYGK----EGXXXXXXXXXXXXXXXHGFVSA--------LPN 1136
+ Q P L ++ +N+ G+ E A L +
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLM 1195
Y GE LSGGQ + + I RA++ NP ++++DE + + + + LE
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1196 RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232
+G T +++ HRL + +D + V+ +G+I+ +G E
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 551
Y + GE LSGGQ + + I RA++ NPK++++DE + + G + I L+
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 552 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 589
G T +++ HRL + N +D + V+ GQ++ G EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 1038 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ--QEP 1095
G ++G +GSGKS++I +I F G+V + KDI L G+V+ Q P
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTP 91
Query: 1096 A-LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTP--------VGERG 1146
L ++ +N+ G+ + A+K +
Sbjct: 92 QPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLMRGRTTVLVAH 1205
+LSGGQ + + I RA++ NP ++++DE + + + + LE +G T +++ H
Sbjct: 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH 211
Query: 1206 RLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232
RL + +D + V+ +G+I+ +G E
Sbjct: 212 RLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 25/194 (12%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
+F+ N + G A++G +G GKS+++ L+ + P GK+ +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQ 66
Query: 1087 KIGLVQQE-PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF---VSALPNAYKTPV 1142
IG V Q + FA S+ D + G+ H + + AL T +
Sbjct: 67 SIGFVPQFFSSPFAYSVLDIVLMGRS-----THINTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 1143 GERG-VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--T 1199
+R LSGGQ+Q I IARA+ ++LLDE TSALD ++ ++ L L + + T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 1200 TVLVAHRLSTIRGV 1213
V H+ + + +
Sbjct: 182 VVFTTHQPNQVVAI 195
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVV 558
LSGGQ+Q I IARA+ K++LLDE TSALD ++ IV L L + VV
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 1091
+RAG+ LVG +G+GKS+++A R T+GK + G+ + + L L + L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
QQ+ FA ++ + + + AL A +G QLSG
Sbjct: 80 QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 1152 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
G+ QR+ +A VL+ NPA +LLLD+ +LD + L + L L +G V+
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 1204 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
+H L+ T+R +++ G+++ G E+++ P+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 496 QVGERGVQLSGGQKQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDR 548
++G QLSGG+ QR+ +A +L+ NP ++LLLD+ +LD +S + + L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSA 178
Query: 549 L-MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
L G V+ +H L+ T+R+ +++ G+++ +G EE++
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-R 1085
+ D +L I +G+ A++G +G+GKS+++ L+ + P+ G+ + G+++ K+L R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1086 LKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNA-YKTPVGE 1144
+ + Q F S+ + I G+ AL Y+
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 1145 RGVQLSGGQKQRIAIARAVLK------NPAILLLDEATSALDAESECVLQEALERLMRGR 1198
LSGG++QR+ +AR + + P L LDE TSALD + L +L R
Sbjct: 142 ----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197
Query: 1199 TTVL--VAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 1235
+ V H L+ D I ++ G++V G+ E+++
Sbjct: 198 PLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 504 LSGGQKQRIAIARAMLK------NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 557
LSGG++QR+ +AR + + P+ L LDE TSALD + L +L V
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 558 --VAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
V H L+ D + ++ QG++V GT EE++
Sbjct: 202 CCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 551
Y + GE LSGGQ + + I RA++ NPK++++D+ + + G + I L+
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 552 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 589
G T +++ HRL + N +D + V+ GQ++ G EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
++ + G ++G +GSGKS++I +I F G+V + KDI L G+V
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIV 85
Query: 1092 Q--QEPA-LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTP------- 1141
+ Q P L ++ +N+ G+ + A+K
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 1142 -VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLMRGRT 1199
+ +LSGGQ + + I RA++ NP ++++D+ + + + + LE +G T
Sbjct: 146 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGIT 205
Query: 1200 TVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232
+++ HRL + +D + V+ +G+I+ +G E
Sbjct: 206 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 1091
+RAG+ LVG +G+GKS+++A R T+GK + G+ + + L L + L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
QQ+ FA ++ + + + AL A +G QLSG
Sbjct: 80 QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 1152 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
G+ QR+ +A VL+ NPA +LLLDE ++LD + L + L L +G V
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXS 189
Query: 1204 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
+H L+ T+R +++ G+ + G E+++ P+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 496 QVGERGVQLSGGQKQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDR 548
++G QLSGG+ QR+ +A +L+ NP ++LLLDE ++LD +S + + L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 549 L-MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
L G V +H L+ T+R+ +++ G+ + +G EE++
Sbjct: 179 LCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 1091
+RAG+ LVG +G+GKS+++A R T+GK + G+ + + L L + L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
QQ+ FA ++ + + + AL A +G QLSG
Sbjct: 80 QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 1152 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
G+ QR+ +A VL+ NPA +LLLDE ++LD + L + L L +G V
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXS 189
Query: 1204 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
+H L+ T+R +++ G+ + G E+++ P+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 496 QVGERGVQLSGGQKQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDR 548
++G QLSGG+ QR+ +A +L+ NP ++LLLDE ++LD +S + + L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 549 L-MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
L G V +H L+ T+R+ +++ G+ + +G EE++
Sbjct: 179 LSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
IR G+ +VG +G GK++ + ++ +PT GKV D ++ K ++ E
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQYIKAE 429
Query: 1095 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKT----PVG-----ER 1145
+ I K N YKT P+G +R
Sbjct: 430 YEGTVYELLSKIDSSKLNS----------------------NFYKTELLKPLGIIDLYDR 467
Query: 1146 GVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVL 1202
V+ LSGG+ QR+AIA +L++ I LLDE ++ LD E + A+ LM +T ++
Sbjct: 468 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230
V H + I V +V +G E G H
Sbjct: 528 VEHDVLMIDYVSDRLIVFEG---EPGRH 552
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 499 ERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RTT 555
+R V+ LSGG+ QR+AIA +L++ I LLDE ++ LD V A+ LM +T
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 601
+VV H + I V ++ +G E G H + G + RF
Sbjct: 526 LVVEHDVLMIDYVSDRLIVFEG---EPGRHGRALPPMGMREGMNRF 568
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHR 561
QLSGG+ QR+AIA A+L+ DE +S LD V + RL G+ +VV H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 562 LSTIRNVDTVAVIQQGQ 578
L+ + + V + G+
Sbjct: 288 LAVLDYLSDVIHVVYGE 304
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHR 1206
QLSGG+ QR+AIA A+L+ DE +S LD + + RL G+ ++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 1207 LSTI 1210
L+ +
Sbjct: 288 LAVL 291
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPA---ILLLDEATSALDAESECVLQEALERLM-RG 1197
+G+ LSGG+ QRI +A + K + +LDE T L E L E L RL+ RG
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 1198 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
T +++ H L I+ D I G + G IV G+ E+ P R L+
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 548
GY ++G+ LSGG+ QRI +A + K + +LDE T L + E L R
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 549 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYA 596
L+ G T +V+ H L I+N D + + + G +V TGT EE+ +Y
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 1149 LSGGQKQRIAIARAVLK--NPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAH 1205
LSGG+ QRI +A + I +LDE T L L + L++L G T ++V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 1206 RLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYS 1242
IR D I G GR+V QG+ EL+ PD + +
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLT 567
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 504 LSGGQKQRIAIARAMLKNPK--ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAH 560
LSGG+ QRI +A + I +LDE T L + + L +L +G T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 561 RLSTIRNVDTVAVI------QQGQVVETGTHEELI 589
IRN D + I G+VV GT +EL+
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
IR G+ +VG +G GK++ + ++ +PT GKV D ++ K ++ E
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQYIKAE 415
Query: 1095 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKT----PVG-----ER 1145
+ I K N YKT P+G +R
Sbjct: 416 YEGTVYELLSKIDSSKLNS----------------------NFYKTELLKPLGIIDLYDR 453
Query: 1146 GVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVL 1202
V+ LSGG+ QR+AIA +L++ I LLDE ++ LD E + A+ LM +T ++
Sbjct: 454 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230
V H + I V +V +G E G H
Sbjct: 514 VEHDVLMIDYVSDRLIVFEG---EPGRH 538
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 499 ERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RTT 555
+R V+ LSGG+ QR+AIA +L++ I LLDE ++ LD V A+ LM +T
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 556 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 601
+VV H + I V ++ +G E G H + G + RF
Sbjct: 512 LVVEHDVLMIDYVSDRLIVFEG---EPGRHGRALPPMGMREGMNRF 554
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHR 561
QLSGG+ QR+AIA A+L+ DE +S LD V + RL G+ +VV H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 562 LSTIRNVDTVAVIQQGQ 578
L+ + + V + G+
Sbjct: 274 LAVLDYLSDVIHVVYGE 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHR 1206
QLSGG+ QR+AIA A+L+ DE +S LD + + RL G+ ++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 1207 LSTI 1210
L+ +
Sbjct: 274 LAVL 277
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAH 560
V SGG+K+R I + + P++ +LDE+ S LD + +V + ++ L G R+ ++V H
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 561 --RLSTIRNVDTVAVIQQGQVVETG 583
R+ D V V+ QG++V++G
Sbjct: 223 YQRILDYIKPDYVHVLYQGRIVKSG 247
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVLVAH 1205
V SGG+K+R I + + P + +LDE+ S LD ++ V+ + + L G R+ ++V H
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 1206 --RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
R+ D + V+ GRIV+ G + + + Y L + Q
Sbjct: 223 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 267
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRR 1078
S D + + +L + G+ A++G +GSGKS++ A + Y+ T G V GKD+
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 1079 LN 1080
L+
Sbjct: 89 LS 90
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAH 560
V SGG+K+R I + + P++ +LDE+ S LD + +V + ++ L G R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 561 --RLSTIRNVDTVAVIQQGQVVETG 583
R+ D V V+ QG++V++G
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSG 228
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVLVAH 1205
V SGG+K+R I + + P + +LDE+ S LD ++ V+ + + L G R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 1206 --RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
R+ D + V+ GRIV+ G + + + Y L + Q
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRR 1078
S D + + +L + G+ A++G +GSGKS++ A + Y+ T G V GKD+
Sbjct: 10 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 69
Query: 1079 LN 1080
L+
Sbjct: 70 LS 71
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 1144 ERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTV 1201
ER +Q LSGG+ QR+AIA A+L+N DE +S LD A+ RL G++ +
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 1202 LVAHRLSTI 1210
+V H L+ +
Sbjct: 213 VVEHDLAVL 221
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 499 ERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-MVGRTTV 556
ER +Q LSGG+ QR+AIA A+L+N DE +S LD A+ RL G++ +
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 557 VVAHRLSTI 565
VV H L+ +
Sbjct: 213 VVEHDLAVL 221
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 1136 NAYKT----PVG-----ERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
N YKT P+G +R V +LSGG+ QR+AIA +L++ I LLDE ++ LD E
Sbjct: 379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438
Query: 1186 VLQEALERLMRG--RTTVLVAHRLSTI 1210
+ A+ L +T ++V H + I
Sbjct: 439 AVSRAIRHLXEKNEKTALVVEHDVLXI 465
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RTTVVVAH 560
+LSGG+ QR+AIA +L++ I LLDE ++ LD V A+ L +T +VV H
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 601
+ I V + +G E G + + G RF
Sbjct: 461 DVLXIDYVSDRLXVFEG---EPGKYGRALPPXGXREGXNRF 498
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
LSGG K ++A+ARA+L+N ILLLDE T+ LD + + + L+ G T++ ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 564 TIRNV 568
+ NV
Sbjct: 607 FLDNV 611
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
LSGG K ++A+ARAVL+N ILLLDE T+ LD + L L G T++ ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 1208
LSGGQK ++ +A + P +++LDE T+ LD +S L +AL+ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1209 TIRGV-DCIGVVQDGRIVEQGSH 1230
+ + + + V+DGR G +
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHN 982
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
LSGGQK ++ +A + P +++LDE T+ LD S + +AL G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 564 TIRNV-DTVAVIQQGQVVETG 583
+N+ + V ++ G+ +G
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1010 IELRHVDFAYP--SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+++ + +F YP S+P + D N + A++G +G+GKS++I ++ PT+G
Sbjct: 672 VKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 1068 KV 1069
+V
Sbjct: 729 EV 730
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
LSGG K ++A+ARA+L+N ILLLDE T+ LD + + + L+ G T++ ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 564 TIRNV 568
+ NV
Sbjct: 607 FLDNV 611
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
LSGG K ++A+ARAVL+N ILLLDE T+ LD + L L G T++ ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 1208
LSGGQK ++ +A + P +++LDE T+ LD +S L +AL+ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1209 TIRGV-DCIGVVQDGRIVEQGSH 1230
+ + + + V+DGR+ G +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
LSGGQK ++ +A + P +++LDE T+ LD S + +AL G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 564 TIRNV-DTVAVIQQGQVVETG 583
+N+ + V ++ G++ +G
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 1010 IELRHVDFAYP--SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+++ +++F YP S+P + D N + A++G +G+GKS++I ++ PT+G
Sbjct: 672 VKVTNMEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 1068 KV 1069
+V
Sbjct: 729 EV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
LSGG K ++A+ARA+L+N ILLLDE T+ LD + + + L+ G T++ ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 600
Query: 564 TIRNV 568
+ NV
Sbjct: 601 FLDNV 605
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
LSGG K ++A+ARAVL+N ILLLDE T+ LD + L L G T++ ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 597
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 1208
LSGGQK ++ +A + P +++LDE T+ LD +S L +AL+ G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 1209 TIRGV-DCIGVVQDGRIVEQGSH 1230
+ + + + V+DGR G +
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSGHN 976
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
LSGGQK ++ +A + P +++LDE T+ LD S + +AL G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 564 TIRNV-DTVAVIQQGQVVETG 583
+N+ + V ++ G+ +G
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1010 IELRHVDFAYP--SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
+++ + +F YP S+P + D N + A++G +G+GKS++I ++ PT+G
Sbjct: 666 VKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 722
Query: 1068 KV 1069
+V
Sbjct: 723 EV 724
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 18/252 (7%)
Query: 1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
RG L +D + + K + +I G L G +G+GK++++ ++ + T+
Sbjct: 16 RGSHXLIQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS 75
Query: 1067 GKVMIDGKDIRRL--NLKSLRLKIGLVQQ---EPALFAASIFDNIAYGK-EGXXXXXXXX 1120
G V + GK ++ + +++R IG V E + D + G +
Sbjct: 76 GTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 1121 XXXXXXXHGFVSALPNAYKTP--VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
H + + + K +G LS G+KQR+ IARA+ P +L+LDE +
Sbjct: 136 DEIRNEAHQLLKLVGXSAKAQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAG 191
Query: 1179 LD---AESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234
LD ES + ++L + V H + I I +++DG+ ++QG+ +++
Sbjct: 192 LDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
Query: 1235 SRPDGAYSRLLQ 1246
+ + SR Q
Sbjct: 252 TSEN--XSRFFQ 261
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT---VVVAH 560
LS G+KQR+ IARA+ P++L+LDE + LD + + LD L T + V H
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 561 RLSTIR-NVDTVAVIQQGQVVETGTHEELI 589
+ I N + +++ GQ ++ G E+++
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 548
GY ++G+ LSGG+ QR+ +A + + + +LDE T+ L + + + L R
Sbjct: 835 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 549 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRF 601
L+ G T +V+ H L I+ D + + + GQ+V GT EE+ ++ R+
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RY 951
Query: 602 QEMVRNRDFA 611
+ + RD A
Sbjct: 952 LKPILERDRA 961
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RG 1197
+G+ LSGG+ QR+ +A + + + +LDE T+ L + L + L RL+ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 1198 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
T +++ H L I+ D I G + G+IV G+ E+ + R L+
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 548
GY ++G+ LSGG+ QR+ +A + + + +LDE T+ L + + + L R
Sbjct: 835 GYX-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 549 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRF 601
L+ G T +V+ H L I+ D + + + GQ+V GT EE+ ++ R+
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RY 951
Query: 602 QEMVRNRDFA 611
+ + RD A
Sbjct: 952 LKPILERDRA 961
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RG 1197
+G+ LSGG+ QR+ +A + + + +LDE T+ L + L + L RL+ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 1198 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
T +++ H L I+ D I G + G+IV G+ E+ + R L+
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRRLN---- 1080
+ K NL + G+ AL+G +G+GKS++ ++ + Y G++++DG++I L+
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 1081 -LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYK 1139
K L L + P + A+ K G + +Y
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD-WDESYL 136
Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
+ G SGG+K+R I + ++ P +LDE S LD ++ V+ + MRG
Sbjct: 137 SRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV-NAMRGPN 193
Query: 1200 --TVLVAH--RLSTIRGVDCIGVVQDGRIVEQG 1228
+++ H R+ D + V+ DGR+V G
Sbjct: 194 FGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM---VGRTTVVVAHR 561
SGG+K+R I + ++ P +LDE S LD + +V ++ + G + R
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204
Query: 562 LSTIRNVDTVAVIQQGQVVETGTHE---ELIAKA 592
+ D V V+ G+VV TG E EL AK
Sbjct: 205 ILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 1142 VGERGVQLSGGQKQRIAIA---RAVLKNPAILLLDEATSALDAESECVLQEALERLMR-G 1197
+G+ +LSGG+ QRI +A R + + +LDE T+ L LQ L +L+ G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 1198 RTTVLVAHRLSTIRGVDCI-----GVVQD-GRIVEQGSHSEL 1233
T + V H++ + D + G +D GR+V QG+ +E+
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEV 825
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 496 QVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDRLM-V 551
++G+ +LSGG+ QRI +A + ++ + + +LDE T+ L +Q L +L+
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 552 GRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGA 594
G T + V H++ + D V I G++V GT E+ AG+
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGS 831
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1149 LSGGQKQRIAIARAVLKN--PAILLLDEATSALDAESECVLQEALERLMRGRTTV-LVAH 1205
LS G+ QR+ +A + N + +LDE ++ L L ALE L RG ++ +V H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 1206 RLSTIRGVDCI 1216
L IR D +
Sbjct: 440 DLDVIRRADWL 450
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 496 QVGERGVQLSGGQKQRIAIARAMLK--NPKIL-LLDEATSALDAGSESIVQEALDRLM-V 551
++G+ LSGG+ QR+ +A + + N + L +LDE T+ L + + + L RL+
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 552 GRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRFQEMV 605
G T +V+ H L I+ D + + + GQ+V GT EE+ ++ R+ + +
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RYLKPI 653
Query: 606 RNRDFA 611
RD A
Sbjct: 654 LERDRA 659
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RG 1197
+G+ LSGG+ QR+ +A + + + +LDE T+ L + L + L RL+ G
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 1198 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
T +++ H L I+ D I G + G+IV G+ E+ + R L+
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 1205
LSGG+ Q++ IA + K + +LD+ +S LD E ++ +A++R+ R R T ++ H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 1206 RLS 1208
LS
Sbjct: 445 DLS 447
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 1207
LSGG QR+ +A ++L+ + + D+ +S LD + +A+ L++ + ++V H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TTVVVAH 560
LSGG+ Q++ IA + K + +LD+ +S LD IV +A+ R+ R T ++ H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRD 609
LS + ++ +G+ + G + +R E+ RD
Sbjct: 445 DLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRD 493
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 562
LSGG QR+ +A ++L+ + + D+ +S LD + +A+ L+ + +VV H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 46/204 (22%)
Query: 1017 FAYPSRPDVVVFKDFNLRIRAGQ---SQALV--GASGSGKSSVIALIERFYDPTAGKVMI 1071
F+YPS DF L + G+ S+ LV G +G+GK+++I L+ P
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD------ 405
Query: 1072 DGKDIRRLNLKSLRLKI-----GLVQQEPALFAASI---FDNIAYGKEGXXXXXXXXXXX 1123
+G+DI +LN+ KI G V+Q LF I F N + +
Sbjct: 406 EGQDIPKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFLNPQFQTDVVKPLRIDDIID 462
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
H LSGG+ QR+AI A+ I L+DE ++ LD+E
Sbjct: 463 QEVQH--------------------LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502
Query: 1184 ECVLQEALER--LMRGRTTVLVAH 1205
+ + + R L +T +V H
Sbjct: 503 RIICSKVIRRFILHNKKTAFIVEH 526
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 29/194 (14%)
Query: 1036 RAGQSQALVGASGSGKSSVIALIE--------RFYDPTAGKVMID---GKDIRRLNLKSL 1084
R GQ LVG +G GKS+ + ++ RF DP + +I G +++ K L
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 1085 RLKIGLVQQEPALFAASIFDNIAYGKEGXXXXX-------XXXXXXXXXXHGFVSALPNA 1137
I A+ DNI +G + + L N
Sbjct: 161 EDDIK------AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV 214
Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R 1196
K + +LSGG+ QR AI + ++ + + DE +S LD + + + L+
Sbjct: 215 LKRDIE----KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 1197 GRTTVLVAHRLSTI 1210
+ + V H LS +
Sbjct: 271 TKYVICVEHDLSVL 284
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAH 560
LSGG+ QR+AI A+ I L+DE ++ LD+ I + + R ++ +T +V H
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAHR 561
+LSGG+ QR AI + ++ + + DE +S LD + + L+ + + V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 562 LSTIRNV-DTVAVI 574
LS + + D V +I
Sbjct: 281 LSVLDYLSDFVCII 294
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 39/203 (19%), Positives = 88/203 (43%), Gaps = 26/203 (12%)
Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
++E+R + Y D V + + I G G +G GK++++ I + P G+
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 1069 VMIDGKDIRRLNLKSLRLKIGLV-----QQEPALFAASIFDNIAYGKEGXXXXXXXXXXX 1123
++ +G I ++ K L ++ E L A + + K
Sbjct: 66 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK------------- 112
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
+ + AL + + ++ +LS G +R+ +A +L N I +LD+ A+D +S
Sbjct: 113 ----NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 1184 ECVLQEALERLMRGRTTVLVAHR 1206
+ + +++ +++ + V+++ R
Sbjct: 169 KHKVLKSILEILKEKGIVIISSR 191
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 561
+LS G +R+ +A +L N +I +LD+ A+D S+ V +++ ++ + V+++ R
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 504 LSGGQKQRIAIARAMLKN--PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAH 560
LSGG+ QRI +A + + +LDE + L + E L RL +G T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 561 RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMV 605
TI + D + I G G H I +G Y L+R ++ +
Sbjct: 582 DEDTIEHADWIVDIGPG----AGEHGGRIVHSGPYDELLRNKDSI 622
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 1149 LSGGQKQRIAIARAVLKN--PAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAH 1205
LSGG+ QRI +A + + +LDE + L L E L RL G T ++V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1206 RLSTIRGVDCIGVV------QDGRIVEQGSHSELVSRPD---GAY 1241
TI D I + GRIV G + EL+ D GAY
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAY 626
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNP---KILLLDEATSALDAGSESIVQEALDR 548
GY ++G+ LSGG+ QR+ +A + K + +LDE T+ L + ++
Sbjct: 853 GY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVING 911
Query: 549 LM-VGRTTVVVAHRLSTIRNVDTV------AVIQQGQVVETGTHEELIAKAGAY 595
L+ G T +V+ H L I+ D + G VV GT E++ A +Y
Sbjct: 912 LVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASY 965
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RG 1197
+G+ LSGG+ QR+ +A + K + +LDE T+ L + L + L+ +G
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG 916
Query: 1198 RTTVLVAHRLSTIRGVDCI 1216
T +++ H L I+ D I
Sbjct: 917 NTVIVIEHNLDVIKTSDWI 935
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
++ NL + G+ ++G +GSGK++++ I P +G + I+G ++R++ +R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYS 77
Query: 1088 IGLVQQEPALFAASI-FDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE-- 1144
L P + + ++I Y E F+ L A K +GE
Sbjct: 78 TNL----PEAYEIGVTVNDIVYLYEELKGLDRDL---------FLEML-KALK--LGEEI 121
Query: 1145 ---RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 1201
+ +LS GQ + + A+ P I+ LDE +DA V+ ++ G+ +
Sbjct: 122 LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGI 179
Query: 1202 LVAHRLSTI 1210
LV H L +
Sbjct: 180 LVTHELDML 188
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 562
+LS GQ + + A+ P+I+ LDE +DA ++ + G+ ++V H L
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILVTHEL 185
Query: 563 STI 565
+
Sbjct: 186 DML 188
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 490 PNGYSTQVGERGVQLSGGQKQRI----AIARAMLKNPKILLLDEATSALDAGSESIVQEA 545
P G + ERGV++ R+ + L+ L+LDEA LD G E +++
Sbjct: 155 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 214
Query: 546 LDRLMVGRTTVV 557
+D++ R T++
Sbjct: 215 VDQIRPDRQTLM 226
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 490 PNGYSTQVGERGVQLSGGQKQRI----AIARAMLKNPKILLLDEATSALDAGSESIVQEA 545
P G + ERGV++ R+ + L+ L+LDEA LD G E +++
Sbjct: 141 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 200
Query: 546 LDRLMVGRTTVV 557
+D++ R T++
Sbjct: 201 VDQIRPDRQTLM 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,865,086
Number of Sequences: 62578
Number of extensions: 1211972
Number of successful extensions: 3107
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2618
Number of HSP's gapped (non-prelim): 304
length of query: 1252
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1142
effective length of database: 8,089,757
effective search space: 9238502494
effective search space used: 9238502494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)