Query 000858
Match_columns 1251
No_of_seqs 639 out of 3770
Neff 5.6
Searched_HMMs 46136
Date Tue Apr 2 00:35:10 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 4.6E-65 9.9E-70 590.4 39.2 554 446-1238 182-790 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-60 3.7E-65 561.3 32.2 392 703-1222 276-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 1.6E-54 3.5E-59 485.4 27.7 377 859-1242 7-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 7E-51 1.5E-55 511.4 39.9 538 449-1237 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 1.1E-48 2.5E-53 463.5 39.1 440 690-1222 479-939 (953)
6 KOG0738 AAA+-type ATPase [Post 100.0 2.1E-45 4.6E-50 410.8 23.4 284 942-1238 205-490 (491)
7 COG1222 RPT1 ATP-dependent 26S 100.0 9.8E-45 2.1E-49 404.4 24.1 247 943-1218 145-395 (406)
8 COG0464 SpoVK ATPases of the A 100.0 7.6E-44 1.7E-48 429.8 33.6 452 645-1220 20-488 (494)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 1.9E-44 4.2E-49 419.1 24.1 297 945-1244 186-522 (802)
10 KOG0735 AAA+-type ATPase [Post 100.0 3.8E-40 8.2E-45 387.8 30.4 298 850-1178 595-894 (952)
11 KOG0739 AAA+-type ATPase [Post 100.0 5.5E-41 1.2E-45 364.4 18.2 299 936-1240 120-439 (439)
12 KOG0741 AAA+-type ATPase [Post 100.0 4.3E-38 9.3E-43 361.2 19.2 390 687-1167 302-721 (744)
13 KOG0734 AAA+-type ATPase conta 100.0 2.5E-37 5.3E-42 355.3 20.6 268 942-1240 297-566 (752)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 9.9E-36 2.1E-40 356.0 33.0 410 690-1236 68-484 (489)
15 KOG0740 AAA+-type ATPase [Post 100.0 7.6E-36 1.7E-40 345.8 18.6 279 944-1240 148-427 (428)
16 KOG0652 26S proteasome regulat 100.0 1.4E-35 3E-40 317.4 18.7 245 943-1216 165-413 (424)
17 KOG0727 26S proteasome regulat 100.0 2.6E-34 5.7E-39 306.5 20.5 245 942-1215 148-396 (408)
18 KOG0728 26S proteasome regulat 100.0 5.2E-34 1.1E-38 304.0 20.9 244 945-1217 143-390 (404)
19 KOG0726 26S proteasome regulat 100.0 7.7E-35 1.7E-39 315.8 14.3 244 945-1217 181-428 (440)
20 KOG0731 AAA+-type ATPase conta 100.0 1E-33 2.2E-38 344.2 22.3 248 942-1219 304-557 (774)
21 COG1223 Predicted ATPase (AAA+ 100.0 1.3E-33 2.8E-38 303.0 18.6 242 945-1219 117-359 (368)
22 PTZ00454 26S protease regulato 100.0 6.2E-33 1.4E-37 325.5 24.6 245 943-1216 139-387 (398)
23 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-33 2.6E-38 334.7 17.9 263 945-1244 181-445 (693)
24 KOG0729 26S proteasome regulat 100.0 8.1E-33 1.8E-37 296.9 16.5 248 943-1219 171-422 (435)
25 PRK03992 proteasome-activating 100.0 4.7E-32 1E-36 318.3 24.5 250 944-1222 126-379 (389)
26 PTZ00361 26 proteosome regulat 100.0 3.3E-31 7.1E-36 313.2 22.6 246 944-1218 178-427 (438)
27 COG0465 HflB ATP-dependent Zn 100.0 1.8E-31 3.9E-36 320.3 20.1 251 943-1223 144-398 (596)
28 TIGR01241 FtsH_fam ATP-depende 100.0 6.2E-31 1.3E-35 317.9 24.4 269 942-1240 48-320 (495)
29 KOG0732 AAA+-type ATPase conta 100.0 1E-32 2.2E-37 342.3 7.6 414 630-1134 288-728 (1080)
30 TIGR01243 CDC48 AAA family ATP 100.0 4.4E-30 9.6E-35 323.6 22.8 288 945-1243 174-463 (733)
31 TIGR01242 26Sp45 26S proteasom 100.0 3.2E-29 6.9E-34 292.1 23.6 243 944-1215 117-363 (364)
32 TIGR03689 pup_AAA proteasome A 100.0 8.6E-29 1.9E-33 296.3 25.3 272 943-1241 176-503 (512)
33 CHL00176 ftsH cell division pr 100.0 1.1E-28 2.3E-33 303.8 22.5 243 944-1216 178-424 (638)
34 KOG0732 AAA+-type ATPase conta 100.0 8E-29 1.7E-33 307.9 18.8 347 830-1222 176-532 (1080)
35 KOG0651 26S proteasome regulat 100.0 5.5E-29 1.2E-33 273.4 13.7 243 945-1216 128-374 (388)
36 PRK10733 hflB ATP-dependent me 100.0 1E-27 2.2E-32 297.5 23.8 249 943-1221 146-398 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 1E-26 2.2E-31 298.4 20.3 185 981-1172 1627-1860(2281)
38 KOG0741 AAA+-type ATPase [Post 99.9 5.1E-27 1.1E-31 270.6 12.3 264 945-1222 215-497 (744)
39 PLN00020 ribulose bisphosphate 99.9 1.5E-24 3.2E-29 246.9 23.9 188 981-1172 145-354 (413)
40 KOG0736 Peroxisome assembly fa 99.9 1E-22 2.3E-27 243.6 16.4 249 985-1243 432-682 (953)
41 COG1222 RPT1 ATP-dependent 26S 99.9 5.8E-23 1.2E-27 230.7 12.4 232 448-916 145-394 (406)
42 KOG0738 AAA+-type ATPase [Post 99.9 1E-22 2.3E-27 229.4 13.2 250 447-917 205-472 (491)
43 KOG0735 AAA+-type ATPase [Post 99.9 1.2E-21 2.6E-26 232.6 14.6 260 950-1243 409-677 (952)
44 TIGR02639 ClpA ATP-dependent C 99.8 2.9E-19 6.4E-24 225.6 32.2 380 690-1172 263-714 (731)
45 KOG0737 AAA+-type ATPase [Post 99.8 2.1E-20 4.6E-25 211.4 12.5 233 434-885 72-317 (386)
46 CHL00181 cbbX CbbX; Provisiona 99.8 7.1E-19 1.5E-23 199.4 19.5 237 950-1211 24-282 (287)
47 PRK11034 clpA ATP-dependent Cl 99.8 6.8E-18 1.5E-22 211.9 30.2 202 950-1171 459-717 (758)
48 TIGR02880 cbbX_cfxQ probable R 99.8 2E-18 4.4E-23 195.4 18.7 237 950-1211 23-281 (284)
49 TIGR02881 spore_V_K stage V sp 99.8 2.7E-18 5.9E-23 191.9 17.3 217 947-1175 4-244 (261)
50 KOG0744 AAA+-type ATPase [Post 99.8 8.8E-19 1.9E-23 194.2 12.0 197 936-1134 129-342 (423)
51 KOG0742 AAA+-type ATPase [Post 99.8 4.6E-18 1E-22 192.3 17.0 208 947-1165 353-588 (630)
52 TIGR03345 VI_ClpV1 type VI sec 99.8 1.3E-16 2.8E-21 203.6 30.5 201 949-1172 566-833 (852)
53 PF00004 AAA: ATPase family as 99.8 3.1E-18 6.8E-23 169.0 12.4 130 987-1118 1-132 (132)
54 KOG0739 AAA+-type ATPase [Post 99.8 6.6E-19 1.4E-23 193.0 8.0 223 435-878 115-349 (439)
55 KOG0734 AAA+-type ATPase conta 99.7 5.6E-18 1.2E-22 196.7 10.5 220 439-881 289-523 (752)
56 CHL00095 clpC Clp protease ATP 99.7 1.5E-15 3.2E-20 194.4 33.5 204 949-1172 509-784 (821)
57 COG0464 SpoVK ATPases of the A 99.7 5.7E-17 1.2E-21 196.7 18.7 248 968-1243 3-252 (494)
58 PRK10865 protein disaggregatio 99.7 1E-15 2.2E-20 196.0 27.9 166 949-1134 568-781 (857)
59 COG0542 clpA ATP-binding subun 99.7 1.1E-15 2.4E-20 189.0 26.5 162 950-1134 492-707 (786)
60 TIGR03346 chaperone_ClpB ATP-d 99.7 5.9E-15 1.3E-19 189.4 33.2 205 949-1173 565-829 (852)
61 CHL00195 ycf46 Ycf46; Provisio 99.7 2.2E-16 4.7E-21 190.2 14.2 239 442-917 216-466 (489)
62 PF05496 RuvB_N: Holliday junc 99.7 4.8E-16 1E-20 168.3 14.3 198 945-1165 20-225 (233)
63 TIGR02639 ClpA ATP-dependent C 99.7 9.8E-16 2.1E-20 193.8 18.3 185 946-1155 179-386 (731)
64 KOG0743 AAA+-type ATPase [Post 99.7 1.2E-15 2.6E-20 177.2 17.3 220 945-1175 197-429 (457)
65 CHL00206 ycf2 Ycf2; Provisiona 99.6 4.7E-16 1E-20 201.6 12.4 132 687-883 1718-1861(2281)
66 COG2256 MGS1 ATPase related to 99.6 6.9E-15 1.5E-19 168.5 19.4 181 945-1166 20-217 (436)
67 TIGR00635 ruvB Holliday juncti 99.6 1.7E-14 3.7E-19 164.2 21.4 199 947-1168 2-208 (305)
68 PRK00080 ruvB Holliday junctio 99.6 4.2E-14 9E-19 163.3 23.8 201 946-1169 22-230 (328)
69 PTZ00454 26S protease regulato 99.6 1.7E-15 3.6E-20 178.9 12.4 232 447-914 138-386 (398)
70 PRK03992 proteasome-activating 99.6 2.6E-15 5.6E-20 177.2 12.9 234 447-916 124-374 (389)
71 KOG0731 AAA+-type ATPase conta 99.6 2.5E-15 5.3E-20 184.7 11.0 218 446-883 303-537 (774)
72 TIGR00763 lon ATP-dependent pr 99.6 2E-14 4.3E-19 183.0 18.8 212 950-1173 321-558 (775)
73 TIGR02902 spore_lonB ATP-depen 99.6 2.6E-14 5.6E-19 174.8 19.0 201 945-1170 61-313 (531)
74 PRK11034 clpA ATP-dependent Cl 99.6 3E-14 6.5E-19 179.4 17.7 197 947-1167 184-407 (758)
75 KOG0726 26S proteasome regulat 99.6 2.8E-15 6E-20 164.4 6.3 144 688-913 265-425 (440)
76 KOG0728 26S proteasome regulat 99.6 5.6E-15 1.2E-19 159.1 8.3 147 688-914 227-388 (404)
77 KOG0740 AAA+-type ATPase [Post 99.6 6.7E-15 1.5E-19 172.1 9.5 211 450-881 149-373 (428)
78 TIGR03345 VI_ClpV1 type VI sec 99.5 2.2E-13 4.7E-18 174.4 20.8 185 946-1155 184-391 (852)
79 TIGR01241 FtsH_fam ATP-depende 99.5 1.8E-14 4E-19 175.1 10.1 216 444-881 45-277 (495)
80 PRK12323 DNA polymerase III su 99.5 4.2E-13 9E-18 163.7 20.8 185 945-1166 12-230 (700)
81 PTZ00361 26 proteosome regulat 99.5 3.3E-14 7.1E-19 169.3 10.8 144 690-914 265-424 (438)
82 COG2255 RuvB Holliday junction 99.5 2.5E-13 5.4E-18 149.9 16.8 188 945-1154 22-217 (332)
83 PRK14956 DNA polymerase III su 99.5 3.5E-13 7.6E-18 160.8 18.5 184 945-1165 14-226 (484)
84 PRK14962 DNA polymerase III su 99.5 1E-12 2.2E-17 158.4 20.7 185 945-1166 10-223 (472)
85 KOG0652 26S proteasome regulat 99.5 8.4E-14 1.8E-18 150.9 10.1 146 689-915 252-413 (424)
86 KOG2028 ATPase related to the 99.5 1.4E-12 3.1E-17 146.9 19.6 212 945-1219 134-372 (554)
87 CHL00095 clpC Clp protease ATP 99.5 5.3E-13 1.1E-17 171.1 18.5 184 947-1155 177-382 (821)
88 KOG0729 26S proteasome regulat 99.5 7.1E-14 1.5E-18 151.8 8.9 127 688-881 257-400 (435)
89 COG0465 HflB ATP-dependent Zn 99.5 1.4E-13 3E-18 166.9 12.2 129 690-885 231-376 (596)
90 TIGR00390 hslU ATP-dependent p 99.5 4E-13 8.6E-18 157.3 15.0 178 951-1128 14-342 (441)
91 PRK10865 protein disaggregatio 99.5 4.4E-13 9.5E-18 172.0 16.7 183 946-1153 175-380 (857)
92 TIGR03346 chaperone_ClpB ATP-d 99.5 8E-13 1.7E-17 170.0 19.1 185 946-1155 170-377 (852)
93 PRK07003 DNA polymerase III su 99.5 9E-13 2E-17 162.4 18.5 185 945-1166 12-225 (830)
94 CHL00176 ftsH cell division pr 99.5 1.6E-13 3.5E-18 170.2 12.1 219 443-882 172-406 (638)
95 PRK14961 DNA polymerase III su 99.5 3.1E-12 6.7E-17 150.0 21.0 186 945-1167 12-226 (363)
96 PRK13342 recombination factor 99.5 3.1E-12 6.7E-17 152.4 21.2 181 946-1167 9-202 (413)
97 KOG2004 Mitochondrial ATP-depe 99.4 1.1E-12 2.4E-17 157.7 16.7 174 949-1134 411-598 (906)
98 PRK14949 DNA polymerase III su 99.4 2.2E-12 4.7E-17 161.7 19.9 191 945-1166 12-225 (944)
99 PRK05342 clpX ATP-dependent pr 99.4 2.4E-12 5.2E-17 152.7 18.4 226 946-1171 67-380 (412)
100 PRK14960 DNA polymerase III su 99.4 2.6E-12 5.7E-17 157.1 18.7 185 945-1166 11-224 (702)
101 PRK14958 DNA polymerase III su 99.4 3.3E-12 7.1E-17 155.5 19.3 187 945-1168 12-227 (509)
102 PRK07994 DNA polymerase III su 99.4 3.6E-12 7.7E-17 157.6 19.6 185 945-1166 12-225 (647)
103 TIGR02928 orc1/cdc6 family rep 99.4 1.2E-11 2.7E-16 144.1 23.0 202 949-1171 15-256 (365)
104 PRK05201 hslU ATP-dependent pr 99.4 2.1E-12 4.6E-17 151.3 15.8 179 950-1128 16-344 (443)
105 PRK00149 dnaA chromosomal repl 99.4 7.1E-12 1.5E-16 150.9 20.8 169 985-1167 149-328 (450)
106 TIGR01242 26Sp45 26S proteasom 99.4 6.9E-13 1.5E-17 155.4 11.3 127 690-882 204-346 (364)
107 PRK10733 hflB ATP-dependent me 99.4 7E-13 1.5E-17 165.7 11.9 127 690-882 233-375 (644)
108 PRK06645 DNA polymerase III su 99.4 8.6E-12 1.9E-16 151.2 20.8 186 945-1167 17-235 (507)
109 PRK04195 replication factor C 99.4 5.1E-12 1.1E-16 153.4 18.9 186 945-1161 10-203 (482)
110 PRK00411 cdc6 cell division co 99.4 1.4E-11 3E-16 145.1 21.5 202 948-1170 29-263 (394)
111 PRK08691 DNA polymerase III su 99.4 7.1E-12 1.5E-16 154.6 19.5 186 945-1167 12-226 (709)
112 PLN03025 replication factor C 99.4 7.5E-12 1.6E-16 144.2 18.3 182 945-1164 9-203 (319)
113 TIGR00362 DnaA chromosomal rep 99.4 6.9E-12 1.5E-16 149.0 18.3 170 985-1168 137-317 (405)
114 PRK14964 DNA polymerase III su 99.4 9.6E-12 2.1E-16 149.9 19.0 186 945-1167 9-223 (491)
115 COG0466 Lon ATP-dependent Lon 99.4 8.1E-12 1.7E-16 151.5 18.0 172 950-1133 324-509 (782)
116 PRK14951 DNA polymerase III su 99.4 2E-11 4.3E-16 150.8 21.3 186 945-1167 12-231 (618)
117 PRK07940 DNA polymerase III su 99.4 1.1E-11 2.4E-16 146.4 17.5 191 947-1162 3-215 (394)
118 PRK14957 DNA polymerase III su 99.4 2E-11 4.3E-16 149.0 20.1 186 945-1167 12-226 (546)
119 TIGR02397 dnaX_nterm DNA polym 99.3 4E-11 8.7E-16 139.1 20.7 186 945-1167 10-224 (355)
120 PRK12402 replication factor C 99.3 2.9E-11 6.3E-16 139.1 19.0 189 945-1165 11-230 (337)
121 TIGR00382 clpX endopeptidase C 99.3 2E-11 4.4E-16 144.4 17.9 180 951-1130 79-329 (413)
122 PRK14969 DNA polymerase III su 99.3 2.3E-11 4.9E-16 148.9 18.8 185 945-1166 12-225 (527)
123 PRK05563 DNA polymerase III su 99.3 4.2E-11 9E-16 147.6 21.1 184 945-1165 12-224 (559)
124 PRK13341 recombination factor 99.3 3E-11 6.5E-16 152.0 20.1 182 945-1167 24-223 (725)
125 PRK07764 DNA polymerase III su 99.3 2.1E-11 4.6E-16 154.9 19.0 184 945-1165 11-225 (824)
126 COG1223 Predicted ATPase (AAA+ 99.3 3.4E-12 7.3E-17 139.0 9.8 128 688-881 197-337 (368)
127 PHA02544 44 clamp loader, smal 99.3 4.1E-11 8.9E-16 137.2 19.2 157 945-1133 17-174 (316)
128 KOG0727 26S proteasome regulat 99.3 5E-12 1.1E-16 136.8 10.9 215 446-881 147-378 (408)
129 PRK14963 DNA polymerase III su 99.3 3E-11 6.5E-16 146.9 18.9 185 945-1166 10-222 (504)
130 TIGR03420 DnaA_homol_Hda DnaA 99.3 6E-11 1.3E-15 129.0 19.2 185 946-1167 12-207 (226)
131 PRK08903 DnaA regulatory inact 99.3 1.1E-10 2.4E-15 127.7 21.3 178 945-1164 14-202 (227)
132 PRK10787 DNA-binding ATP-depen 99.3 2.4E-11 5.2E-16 154.4 17.9 210 950-1172 323-558 (784)
133 PRK12422 chromosomal replicati 99.3 5.4E-11 1.2E-15 142.8 19.8 168 985-1166 142-318 (445)
134 PF05673 DUF815: Protein of un 99.3 4.4E-11 9.6E-16 131.6 17.4 190 945-1164 23-244 (249)
135 PRK14088 dnaA chromosomal repl 99.3 4.4E-11 9.6E-16 143.6 18.7 168 985-1166 131-310 (440)
136 PRK14086 dnaA chromosomal repl 99.3 6.2E-11 1.4E-15 145.1 20.0 166 985-1165 315-492 (617)
137 PRK08084 DNA replication initi 99.3 1.5E-10 3.3E-15 128.1 21.3 183 945-1164 18-212 (235)
138 PRK14959 DNA polymerase III su 99.3 5.4E-11 1.2E-15 146.2 19.4 176 945-1156 12-216 (624)
139 KOG0989 Replication factor C, 99.3 2.9E-11 6.2E-16 135.0 15.4 180 945-1158 32-228 (346)
140 PRK14952 DNA polymerase III su 99.3 6.4E-11 1.4E-15 145.8 19.5 183 945-1164 9-222 (584)
141 PLN00020 ribulose bisphosphate 99.3 1.4E-11 3.1E-16 141.7 12.8 128 690-882 196-354 (413)
142 PTZ00112 origin recognition co 99.3 5.8E-11 1.3E-15 146.9 18.3 181 949-1151 755-969 (1164)
143 TIGR02640 gas_vesic_GvpN gas v 99.3 6.6E-11 1.4E-15 133.0 17.5 141 985-1132 22-198 (262)
144 PRK14953 DNA polymerase III su 99.3 1E-10 2.2E-15 141.8 19.5 186 945-1167 12-226 (486)
145 PRK08727 hypothetical protein; 99.3 3.6E-10 7.9E-15 124.9 22.2 145 985-1152 42-196 (233)
146 PRK05896 DNA polymerase III su 99.3 9.9E-11 2.1E-15 143.3 19.2 185 945-1166 12-225 (605)
147 PRK14965 DNA polymerase III su 99.3 8.2E-11 1.8E-15 145.5 18.8 182 945-1163 12-222 (576)
148 PRK06893 DNA replication initi 99.3 3.2E-10 6.9E-15 125.0 21.3 157 985-1163 40-205 (229)
149 PRK07133 DNA polymerase III su 99.3 1.2E-10 2.6E-15 145.1 19.5 190 945-1165 14-223 (725)
150 TIGR02903 spore_lon_C ATP-depe 99.3 1.6E-10 3.5E-15 143.9 20.4 230 945-1214 150-429 (615)
151 PRK06305 DNA polymerase III su 99.3 1.6E-10 3.5E-15 139.1 19.7 184 945-1165 13-226 (451)
152 PRK06647 DNA polymerase III su 99.3 1.3E-10 2.8E-15 143.0 19.2 184 945-1165 12-224 (563)
153 CHL00081 chlI Mg-protoporyphyr 99.3 1E-10 2.3E-15 135.8 17.2 167 945-1132 13-232 (350)
154 PRK09111 DNA polymerase III su 99.2 1.7E-10 3.6E-15 142.7 19.6 192 945-1167 20-239 (598)
155 PRK14970 DNA polymerase III su 99.2 2E-10 4.4E-15 134.6 19.2 186 945-1165 13-213 (367)
156 COG2812 DnaX DNA polymerase II 99.2 8.5E-11 1.8E-15 141.6 15.8 194 945-1169 12-228 (515)
157 TIGR03689 pup_AAA proteasome A 99.2 2.7E-11 5.8E-16 146.6 11.1 127 688-881 272-412 (512)
158 PRK13407 bchI magnesium chelat 99.2 1.3E-10 2.7E-15 134.7 15.4 166 945-1132 4-216 (334)
159 COG1221 PspF Transcriptional r 99.2 5.5E-11 1.2E-15 139.3 11.9 207 945-1172 74-312 (403)
160 PRK08451 DNA polymerase III su 99.2 3.8E-10 8.2E-15 137.4 18.9 187 945-1168 10-225 (535)
161 KOG0651 26S proteasome regulat 99.2 4.1E-11 9E-16 133.5 9.6 147 689-916 213-375 (388)
162 PRK14955 DNA polymerase III su 99.2 4E-10 8.7E-15 133.8 18.6 184 945-1165 12-232 (397)
163 PRK06620 hypothetical protein; 99.2 9.2E-10 2E-14 120.4 19.8 143 985-1164 45-192 (214)
164 COG3829 RocR Transcriptional r 99.2 5.7E-11 1.2E-15 141.3 10.8 202 945-1167 241-477 (560)
165 PRK14087 dnaA chromosomal repl 99.2 5.2E-10 1.1E-14 134.8 19.2 170 985-1169 142-327 (450)
166 cd00009 AAA The AAA+ (ATPases 99.2 2.3E-10 4.9E-15 112.8 12.9 124 984-1117 19-150 (151)
167 PRK05642 DNA replication initi 99.2 1.6E-09 3.5E-14 119.9 20.9 157 985-1164 46-211 (234)
168 PRK00440 rfc replication facto 99.2 6.3E-10 1.4E-14 127.0 18.2 184 945-1166 13-208 (319)
169 PRK14948 DNA polymerase III su 99.2 4.8E-10 1E-14 139.5 18.2 182 945-1163 12-224 (620)
170 PF00308 Bac_DnaA: Bacterial d 99.2 8.1E-10 1.8E-14 121.2 17.6 167 985-1166 35-213 (219)
171 COG2204 AtoC Response regulato 99.2 1.1E-10 2.4E-15 138.9 11.2 208 947-1175 139-380 (464)
172 TIGR01650 PD_CobS cobaltochela 99.1 1.7E-10 3.6E-15 132.5 11.9 143 985-1133 65-234 (327)
173 PRK14950 DNA polymerase III su 99.1 8E-10 1.7E-14 137.2 18.8 183 945-1164 12-224 (585)
174 PRK14954 DNA polymerase III su 99.1 1.4E-09 3.1E-14 134.8 19.8 187 945-1163 12-230 (620)
175 PHA02244 ATPase-like protein 99.1 7E-10 1.5E-14 128.8 15.7 135 985-1128 120-269 (383)
176 TIGR02442 Cob-chelat-sub cobal 99.1 4.8E-10 1E-14 140.3 15.2 165 947-1133 2-215 (633)
177 TIGR02030 BchI-ChlI magnesium 99.1 1.2E-09 2.6E-14 126.9 17.1 164 947-1132 2-219 (337)
178 COG3604 FhlA Transcriptional r 99.1 3.4E-10 7.4E-15 133.2 12.5 201 945-1169 219-456 (550)
179 TIGR02974 phageshock_pspF psp 99.1 5.6E-10 1.2E-14 129.5 13.5 176 985-1169 23-233 (329)
180 PRK14971 DNA polymerase III su 99.1 4.1E-09 9E-14 131.2 21.4 183 945-1164 13-225 (614)
181 PRK11608 pspF phage shock prot 99.1 6.9E-10 1.5E-14 128.6 13.1 202 947-1169 4-240 (326)
182 PF00498 FHA: FHA domain; Int 99.1 4.4E-10 9.5E-15 100.3 8.3 67 154-224 1-68 (68)
183 KOG0615 Serine/threonine prote 99.1 1.7E-10 3.8E-15 132.6 6.7 113 132-245 44-167 (475)
184 PRK09087 hypothetical protein; 99.1 5.1E-09 1.1E-13 115.5 17.9 137 985-1152 45-187 (226)
185 TIGR02329 propionate_PrpR prop 99.0 8.8E-10 1.9E-14 134.8 12.0 202 946-1168 209-449 (526)
186 PRK15424 propionate catabolism 99.0 1.3E-09 2.7E-14 133.5 13.3 202 946-1168 216-464 (538)
187 TIGR01817 nifA Nif-specific re 99.0 5.8E-10 1.3E-14 137.2 10.4 210 945-1175 192-434 (534)
188 COG1474 CDC6 Cdc6-related prot 99.0 1E-08 2.2E-13 120.5 19.7 200 950-1172 18-248 (366)
189 PRK05022 anaerobic nitric oxid 99.0 1.9E-09 4E-14 132.0 14.1 204 947-1171 185-422 (509)
190 COG0714 MoxR-like ATPases [Gen 99.0 1.5E-09 3.3E-14 125.7 12.0 161 951-1132 26-203 (329)
191 PRK11388 DNA-binding transcrip 99.0 9.8E-10 2.1E-14 137.9 10.8 203 946-1169 322-554 (638)
192 PRK15429 formate hydrogenlyase 99.0 3.4E-09 7.4E-14 134.1 15.5 205 946-1171 373-611 (686)
193 COG2607 Predicted ATPase (AAA+ 99.0 1.3E-08 2.9E-13 110.7 17.6 191 945-1165 56-277 (287)
194 COG0542 clpA ATP-binding subun 99.0 3.8E-09 8.2E-14 131.9 15.2 182 947-1153 168-372 (786)
195 COG0593 DnaA ATPase involved i 99.0 2.1E-08 4.6E-13 118.2 20.4 169 984-1167 113-292 (408)
196 PRK09112 DNA polymerase III su 99.0 1.4E-08 3E-13 118.9 18.2 188 945-1164 19-243 (351)
197 PRK10820 DNA-binding transcrip 99.0 2.5E-09 5.4E-14 131.2 12.5 206 945-1171 200-439 (520)
198 cd00060 FHA Forkhead associate 99.0 2.5E-09 5.5E-14 101.5 9.8 97 134-234 1-101 (102)
199 KOG0991 Replication factor C, 99.0 6.1E-09 1.3E-13 112.5 13.4 186 945-1164 23-218 (333)
200 PRK05564 DNA polymerase III su 98.9 2.3E-08 5E-13 115.2 18.7 172 947-1155 2-185 (313)
201 COG1219 ClpX ATP-dependent pro 98.9 3.8E-09 8.2E-14 118.5 11.5 116 947-1062 58-181 (408)
202 COG1224 TIP49 DNA helicase TIP 98.9 2.3E-08 5E-13 113.8 17.6 129 1044-1216 292-433 (450)
203 PF07728 AAA_5: AAA domain (dy 98.9 2.4E-10 5.3E-15 115.4 1.3 112 986-1110 1-139 (139)
204 COG1239 ChlI Mg-chelatase subu 98.9 1.9E-08 4.1E-13 117.5 16.5 169 946-1134 14-234 (423)
205 smart00382 AAA ATPases associa 98.9 6E-09 1.3E-13 101.3 10.5 127 985-1119 3-147 (148)
206 TIGR02031 BchD-ChlD magnesium 98.9 1.1E-08 2.4E-13 127.1 14.9 142 984-1133 16-175 (589)
207 smart00350 MCM minichromosome 98.9 2.2E-08 4.7E-13 122.7 17.0 175 950-1134 204-402 (509)
208 PRK07471 DNA polymerase III su 98.9 2.7E-08 5.8E-13 117.0 16.9 179 945-1156 15-234 (365)
209 PF01078 Mg_chelatase: Magnesi 98.9 8.3E-10 1.8E-14 119.3 3.8 46 947-1008 1-46 (206)
210 TIGR00764 lon_rel lon-related 98.9 2.2E-08 4.8E-13 124.7 16.2 50 946-1011 15-64 (608)
211 TIGR00678 holB DNA polymerase 98.9 3.1E-08 6.7E-13 105.6 14.7 144 983-1153 13-184 (188)
212 TIGR03015 pepcterm_ATPase puta 98.9 1.1E-07 2.3E-12 106.4 19.7 192 985-1216 44-267 (269)
213 PRK11331 5-methylcytosine-spec 98.9 2.1E-08 4.5E-13 119.4 14.5 143 948-1118 174-357 (459)
214 KOG1969 DNA replication checkp 98.9 2.9E-08 6.2E-13 120.9 15.6 166 982-1168 323-514 (877)
215 PF00158 Sigma54_activat: Sigm 98.8 3.2E-09 6.8E-14 112.1 5.8 128 951-1098 1-143 (168)
216 PF07726 AAA_3: ATPase family 98.8 2.2E-09 4.8E-14 107.8 3.6 118 986-1111 1-130 (131)
217 KOG0745 Putative ATP-dependent 98.8 6.2E-08 1.3E-12 112.4 15.7 73 985-1057 227-305 (564)
218 PRK13531 regulatory ATPase Rav 98.8 1.3E-07 2.8E-12 113.6 19.0 160 950-1131 21-193 (498)
219 PF07724 AAA_2: AAA domain (Cd 98.8 1.3E-08 2.8E-13 107.7 9.5 114 983-1099 2-130 (171)
220 PRK07399 DNA polymerase III su 98.8 5.7E-08 1.2E-12 112.2 14.7 180 947-1159 2-220 (314)
221 PRK04132 replication factor C 98.8 7.7E-08 1.7E-12 122.4 16.9 162 981-1166 561-736 (846)
222 COG1220 HslU ATP-dependent pro 98.8 1.5E-08 3.4E-13 114.3 9.2 85 1044-1129 251-346 (444)
223 TIGR02915 PEP_resp_reg putativ 98.8 2.2E-08 4.7E-13 120.2 11.1 202 949-1171 139-374 (445)
224 PF06068 TIP49: TIP49 C-termin 98.7 1.8E-07 4E-12 108.2 16.5 64 948-1020 23-88 (398)
225 COG0470 HolB ATPase involved i 98.7 1E-07 2.2E-12 108.9 14.5 146 950-1126 2-175 (325)
226 TIGR00368 Mg chelatase-related 98.7 3.7E-08 8.1E-13 119.9 11.4 153 946-1122 189-394 (499)
227 PRK05707 DNA polymerase III su 98.7 2.3E-07 4.9E-12 107.9 15.7 150 983-1155 21-198 (328)
228 PRK10923 glnG nitrogen regulat 98.7 1.4E-07 3E-12 114.2 14.1 203 948-1171 137-373 (469)
229 PRK08058 DNA polymerase III su 98.7 3.6E-07 7.8E-12 106.3 16.7 149 947-1130 3-180 (329)
230 KOG1514 Origin recognition com 98.6 8.8E-07 1.9E-11 108.2 18.8 228 951-1219 398-659 (767)
231 PRK11361 acetoacetate metaboli 98.6 2.6E-07 5.6E-12 111.2 13.5 178 985-1171 167-378 (457)
232 PF05621 TniB: Bacterial TniB 98.6 1.4E-06 2.9E-11 99.3 17.6 177 985-1172 62-272 (302)
233 KOG2227 Pre-initiation complex 98.6 3.5E-06 7.6E-11 99.3 19.9 237 950-1220 151-420 (529)
234 smart00763 AAA_PrkA PrkA AAA d 98.5 7.8E-07 1.7E-11 103.7 14.4 63 947-1017 48-118 (361)
235 KOG2035 Replication factor C, 98.5 2.1E-06 4.5E-11 95.5 16.9 183 946-1159 10-227 (351)
236 TIGR00602 rad24 checkpoint pro 98.5 1E-06 2.2E-11 109.8 16.0 195 945-1161 80-324 (637)
237 PRK08116 hypothetical protein; 98.5 4.7E-07 1E-11 102.5 12.0 122 984-1120 114-250 (268)
238 PRK15115 response regulator Gl 98.5 9.7E-07 2.1E-11 106.1 15.1 177 985-1170 158-368 (444)
239 PRK09862 putative ATP-dependen 98.5 8.9E-07 1.9E-11 107.8 13.9 153 946-1122 188-391 (506)
240 PTZ00111 DNA replication licen 98.5 3.4E-07 7.3E-12 116.3 10.6 174 950-1132 451-657 (915)
241 PRK12377 putative replication 98.5 6.6E-07 1.4E-11 100.2 11.8 108 934-1055 59-175 (248)
242 PF13177 DNA_pol3_delta2: DNA 98.5 7.5E-07 1.6E-11 93.5 11.2 133 953-1118 1-160 (162)
243 PRK06871 DNA polymerase III su 98.5 3.4E-06 7.3E-11 97.9 17.5 164 954-1155 7-198 (325)
244 PRK07993 DNA polymerase III su 98.5 3.3E-06 7.1E-11 98.5 17.0 154 982-1156 22-200 (334)
245 COG3283 TyrR Transcriptional r 98.5 7.7E-07 1.7E-11 101.4 11.3 202 945-1167 200-430 (511)
246 PRK13765 ATP-dependent proteas 98.5 9.9E-07 2.1E-11 110.2 13.3 49 945-1009 27-75 (637)
247 TIGR01818 ntrC nitrogen regula 98.5 7.3E-07 1.6E-11 107.6 11.5 205 950-1175 135-373 (463)
248 KOG1051 Chaperone HSP104 and r 98.4 3.7E-06 7.9E-11 107.0 17.7 127 950-1098 563-710 (898)
249 PRK08769 DNA polymerase III su 98.4 7.4E-06 1.6E-10 94.9 18.7 170 954-1158 9-206 (319)
250 PRK07952 DNA replication prote 98.4 1.9E-06 4.1E-11 96.4 12.3 108 934-1055 57-174 (244)
251 TIGR03354 VI_FHA type VI secre 98.4 4.7E-07 1E-11 107.5 7.9 82 146-232 18-103 (396)
252 PRK06964 DNA polymerase III su 98.4 3.9E-06 8.4E-11 98.1 14.3 133 982-1131 19-203 (342)
253 COG0606 Predicted ATPase with 98.3 2.1E-07 4.6E-12 110.2 3.0 47 945-1007 175-221 (490)
254 PF14532 Sigma54_activ_2: Sigm 98.3 3.8E-07 8.2E-12 92.7 4.4 105 985-1119 22-136 (138)
255 PRK10365 transcriptional regul 98.3 3.3E-06 7.2E-11 101.2 13.2 176 985-1169 163-372 (441)
256 PF01637 Arch_ATPase: Archaeal 98.3 1E-06 2.2E-11 94.9 8.0 180 952-1155 2-229 (234)
257 PRK13406 bchD magnesium chelat 98.3 2.5E-06 5.4E-11 105.9 11.7 131 985-1123 26-173 (584)
258 PRK06090 DNA polymerase III su 98.3 1.9E-05 4.1E-10 91.5 17.5 144 954-1130 8-178 (319)
259 KOG1942 DNA helicase, TBP-inte 98.3 1.3E-05 2.7E-10 89.7 14.3 91 1043-1151 296-400 (456)
260 PRK08181 transposase; Validate 98.2 3E-06 6.5E-11 96.0 9.0 69 985-1055 107-179 (269)
261 KOG2680 DNA helicase TIP49, TB 98.2 1.8E-05 4E-10 88.7 14.7 91 1099-1216 339-430 (454)
262 PF00004 AAA: ATPase family as 98.2 1.1E-06 2.3E-11 86.8 4.7 54 690-746 46-111 (132)
263 KOG0990 Replication factor C, 98.2 5.9E-06 1.3E-10 93.7 9.3 157 945-1135 37-206 (360)
264 PF03215 Rad17: Rad17 cell cyc 98.1 4.8E-05 1E-09 93.5 17.1 197 945-1167 15-266 (519)
265 PRK06835 DNA replication prote 98.1 7E-06 1.5E-10 95.6 9.0 111 985-1110 184-305 (329)
266 COG1241 MCM2 Predicted ATPase 98.1 3E-05 6.4E-10 97.0 14.0 176 950-1135 287-486 (682)
267 PF13173 AAA_14: AAA domain 98.1 9E-06 2E-10 81.7 7.8 69 985-1055 3-73 (128)
268 PRK08699 DNA polymerase III su 98.1 1.9E-05 4.2E-10 91.9 11.3 132 982-1130 19-183 (325)
269 PRK08939 primosomal protein Dn 98.1 2E-05 4.4E-10 91.0 11.2 70 984-1055 156-229 (306)
270 COG3284 AcoR Transcriptional a 98.0 8.9E-06 1.9E-10 99.3 8.5 178 985-1169 337-540 (606)
271 PRK06526 transposase; Provisio 98.0 8E-06 1.7E-10 91.9 7.4 70 984-1055 98-171 (254)
272 KOG0742 AAA+-type ATPase [Post 98.0 2.6E-05 5.6E-10 90.4 10.8 124 703-874 442-587 (630)
273 PF01695 IstB_IS21: IstB-like 98.0 5.5E-06 1.2E-10 88.4 5.0 70 983-1054 46-119 (178)
274 PF13401 AAA_22: AAA domain; P 98.0 2.7E-05 5.9E-10 77.2 9.6 72 985-1056 5-100 (131)
275 KOG0744 AAA+-type ATPase [Post 98.0 4.1E-06 8.9E-11 94.8 3.4 75 442-521 130-204 (423)
276 COG1484 DnaC DNA replication p 97.9 3E-05 6.4E-10 87.4 9.7 70 984-1055 105-179 (254)
277 smart00240 FHA Forkhead associ 97.9 1.4E-05 3.1E-10 67.3 5.4 50 154-207 1-52 (52)
278 PLN02927 antheraxanthin epoxid 97.9 1.7E-05 3.7E-10 99.7 8.4 84 143-231 545-642 (668)
279 PRK09183 transposase/IS protei 97.9 2.3E-05 5E-10 88.4 8.7 71 984-1055 102-176 (259)
280 KOG0482 DNA replication licens 97.9 6.8E-05 1.5E-09 88.9 12.3 210 950-1171 343-591 (721)
281 PRK06921 hypothetical protein; 97.9 2.4E-05 5.1E-10 88.7 8.1 67 985-1054 118-188 (266)
282 PF05729 NACHT: NACHT domain 97.9 7.4E-05 1.6E-09 76.4 10.8 140 986-1134 2-165 (166)
283 PF00493 MCM: MCM2/3/5 family 97.9 2.7E-06 5.8E-11 99.2 -0.1 175 950-1135 25-224 (331)
284 KOG0478 DNA replication licens 97.9 8.8E-05 1.9E-09 90.8 12.0 173 950-1130 430-624 (804)
285 cd01120 RecA-like_NTPases RecA 97.8 6.8E-05 1.5E-09 76.1 9.5 71 987-1057 2-99 (165)
286 PF12775 AAA_7: P-loop contain 97.8 4.5E-05 9.8E-10 86.7 8.7 139 985-1134 34-195 (272)
287 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00011 2.4E-09 81.7 11.3 130 985-1127 33-175 (231)
288 PF00931 NB-ARC: NB-ARC domain 97.7 0.00029 6.2E-09 79.5 12.3 157 983-1161 18-202 (287)
289 COG1716 FOG: FHA domain [Signa 97.7 0.00019 4.1E-09 76.6 9.7 75 147-228 84-159 (191)
290 KOG0480 DNA replication licens 97.7 0.00027 5.9E-09 86.1 11.9 216 926-1166 331-571 (764)
291 PRK05917 DNA polymerase III su 97.7 0.00058 1.3E-08 78.3 14.0 120 983-1119 18-154 (290)
292 COG4650 RtcR Sigma54-dependent 97.6 9.2E-05 2E-09 82.8 7.0 132 985-1126 209-366 (531)
293 COG1618 Predicted nucleotide k 97.6 0.00051 1.1E-08 71.9 10.7 24 985-1008 6-29 (179)
294 PRK07132 DNA polymerase III su 97.5 0.0028 6E-08 73.3 17.2 125 984-1130 18-160 (299)
295 PRK07276 DNA polymerase III su 97.5 0.0025 5.4E-08 73.3 16.7 122 982-1123 22-166 (290)
296 KOG1970 Checkpoint RAD17-RFC c 97.5 0.0037 8E-08 75.8 18.1 200 946-1168 79-319 (634)
297 KOG2228 Origin recognition com 97.5 0.00043 9.2E-09 79.5 9.3 161 950-1132 25-219 (408)
298 KOG1881 Anion exchanger adapto 97.4 0.00058 1.3E-08 84.1 10.0 88 151-241 176-272 (793)
299 PLN03210 Resistant to P. syrin 97.4 0.0027 5.9E-08 85.7 17.2 53 946-1010 181-233 (1153)
300 PRK05818 DNA polymerase III su 97.4 0.0019 4.1E-08 72.9 13.1 121 982-1119 5-147 (261)
301 KOG0477 DNA replication licens 97.3 0.00023 4.9E-09 86.3 5.8 168 927-1116 436-629 (854)
302 PF14516 AAA_35: AAA-like doma 97.3 0.0023 5E-08 74.9 13.8 164 983-1154 30-233 (331)
303 PF03969 AFG1_ATPase: AFG1-lik 97.3 0.00062 1.3E-08 80.5 9.1 102 981-1099 59-168 (362)
304 PF00910 RNA_helicase: RNA hel 97.3 0.00028 6E-09 69.1 5.0 23 987-1009 1-23 (107)
305 COG3267 ExeA Type II secretory 97.3 0.0047 1E-07 69.1 14.8 174 986-1171 53-255 (269)
306 KOG1968 Replication factor C, 97.3 0.00042 9E-09 89.3 7.2 163 987-1168 360-535 (871)
307 TIGR02237 recomb_radB DNA repa 97.3 0.00096 2.1E-08 72.2 9.0 74 984-1057 12-111 (209)
308 PHA00729 NTP-binding motif con 97.3 0.00056 1.2E-08 75.7 7.2 27 985-1011 18-44 (226)
309 cd01124 KaiC KaiC is a circadi 97.3 0.0014 3.1E-08 69.2 10.0 71 987-1057 2-109 (187)
310 KOG2170 ATPase of the AAA+ sup 97.2 0.0045 9.7E-08 70.5 13.9 133 951-1099 84-225 (344)
311 COG5271 MDN1 AAA ATPase contai 97.2 0.00098 2.1E-08 87.0 9.5 137 985-1132 1544-1703(4600)
312 TIGR01618 phage_P_loop phage n 97.2 0.00085 1.8E-08 74.2 7.8 75 981-1057 9-95 (220)
313 PRK00771 signal recognition pa 97.1 0.022 4.8E-07 69.2 19.6 199 983-1216 94-333 (437)
314 PF13207 AAA_17: AAA domain; P 97.1 0.0004 8.6E-09 68.3 4.1 31 987-1017 2-32 (121)
315 PRK08118 topology modulation p 97.1 0.0011 2.4E-08 70.1 6.9 33 985-1017 2-34 (167)
316 COG3456 Predicted component of 97.1 0.0007 1.5E-08 79.5 5.8 75 150-234 24-101 (430)
317 KOG1051 Chaperone HSP104 and r 97.0 0.0038 8.3E-08 80.3 12.4 139 985-1134 209-365 (898)
318 PHA02624 large T antigen; Prov 97.0 0.00067 1.5E-08 83.7 5.3 118 985-1118 432-561 (647)
319 PF05707 Zot: Zonular occluden 97.0 0.0012 2.6E-08 71.2 6.7 121 987-1117 3-144 (193)
320 CHL00181 cbbX CbbX; Provisiona 97.0 0.0038 8.2E-08 71.8 11.1 128 705-885 123-260 (287)
321 cd01121 Sms Sms (bacterial rad 97.0 0.0029 6.2E-08 75.3 10.4 97 983-1079 81-196 (372)
322 PRK11823 DNA repair protein Ra 97.0 0.0031 6.7E-08 76.8 10.7 96 983-1078 79-193 (446)
323 PF03266 NTPase_1: NTPase; In 97.0 0.00044 9.6E-09 73.4 2.9 27 986-1012 1-30 (168)
324 TIGR00763 lon ATP-dependent pr 97.0 0.0042 9.1E-08 80.5 12.4 34 492-527 347-380 (775)
325 PRK07261 topology modulation p 96.9 0.002 4.3E-08 68.3 7.4 34 986-1019 2-35 (171)
326 KOG0479 DNA replication licens 96.9 0.0033 7.2E-08 76.2 9.6 171 950-1132 302-498 (818)
327 PF13191 AAA_16: AAA ATPase do 96.8 0.0026 5.6E-08 66.6 7.2 59 951-1020 2-63 (185)
328 PRK09361 radB DNA repair and r 96.8 0.004 8.7E-08 68.3 9.0 36 983-1018 22-60 (225)
329 PRK00131 aroK shikimate kinase 96.8 0.0012 2.7E-08 68.5 4.6 34 983-1016 3-36 (175)
330 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0049 1.1E-07 70.1 9.6 93 946-1053 57-159 (264)
331 PRK04841 transcriptional regul 96.8 0.019 4.2E-07 75.1 16.4 153 985-1155 33-220 (903)
332 PRK15455 PrkA family serine pr 96.8 0.0019 4.2E-08 79.5 6.4 63 947-1017 74-137 (644)
333 TIGR02012 tigrfam_recA protein 96.7 0.0094 2E-07 69.5 10.9 76 983-1058 54-148 (321)
334 KOG0481 DNA replication licens 96.7 0.0049 1.1E-07 73.8 8.4 167 950-1126 332-521 (729)
335 PRK08533 flagellar accessory p 96.7 0.012 2.5E-07 65.6 11.1 74 983-1056 23-130 (230)
336 PRK00080 ruvB Holliday junctio 96.6 0.022 4.8E-07 66.5 13.5 59 452-524 23-81 (328)
337 cd01131 PilT Pilus retraction 96.6 0.0042 9E-08 67.4 6.9 67 986-1052 3-83 (198)
338 PRK13695 putative NTPase; Prov 96.6 0.011 2.3E-07 62.6 9.5 23 986-1008 2-24 (174)
339 COG1485 Predicted ATPase [Gene 96.5 0.021 4.7E-07 66.5 12.4 100 982-1098 63-170 (367)
340 cd00983 recA RecA is a bacter 96.5 0.0097 2.1E-07 69.5 9.8 74 985-1058 56-148 (325)
341 PRK04296 thymidine kinase; Pro 96.5 0.017 3.7E-07 62.3 11.0 69 986-1055 4-90 (190)
342 PF13671 AAA_33: AAA domain; P 96.5 0.0047 1E-07 62.3 6.2 31 987-1019 2-32 (143)
343 PF13604 AAA_30: AAA domain; P 96.4 0.0077 1.7E-07 65.3 7.8 33 985-1017 19-54 (196)
344 TIGR02880 cbbX_cfxQ probable R 96.4 0.021 4.6E-07 65.6 11.7 81 705-823 122-208 (284)
345 PRK09376 rho transcription ter 96.4 0.0067 1.5E-07 72.1 7.7 72 985-1056 170-269 (416)
346 PRK13947 shikimate kinase; Pro 96.4 0.0028 6.1E-08 66.3 4.1 31 986-1016 3-33 (171)
347 PRK03839 putative kinase; Prov 96.4 0.0026 5.7E-08 67.4 3.9 31 986-1016 2-32 (180)
348 COG1373 Predicted ATPase (AAA+ 96.4 0.018 4E-07 69.2 11.5 121 986-1126 39-161 (398)
349 COG5271 MDN1 AAA ATPase contai 96.4 0.013 2.7E-07 77.5 10.3 135 986-1131 890-1046(4600)
350 PRK14974 cell division protein 96.4 0.025 5.4E-07 66.5 12.1 34 984-1017 140-176 (336)
351 TIGR02688 conserved hypothetic 96.3 0.012 2.7E-07 70.4 9.2 59 985-1055 210-272 (449)
352 cd00464 SK Shikimate kinase (S 96.3 0.0037 7.9E-08 63.9 4.1 31 986-1016 1-31 (154)
353 PRK14722 flhF flagellar biosyn 96.3 0.011 2.4E-07 70.2 8.6 108 985-1106 138-266 (374)
354 PF00437 T2SE: Type II/IV secr 96.3 0.0063 1.4E-07 68.8 6.2 97 945-1053 100-207 (270)
355 cd01394 radB RadB. The archaea 96.3 0.016 3.5E-07 63.2 9.2 35 984-1018 19-56 (218)
356 PRK00625 shikimate kinase; Pro 96.2 0.004 8.7E-08 66.5 4.2 31 986-1016 2-32 (173)
357 PF07693 KAP_NTPase: KAP famil 96.2 0.2 4.3E-06 57.8 18.4 28 982-1009 18-45 (325)
358 cd03283 ABC_MutS-like MutS-lik 96.2 0.022 4.7E-07 62.1 9.9 69 985-1053 26-115 (199)
359 PRK13948 shikimate kinase; Pro 96.2 0.0046 9.9E-08 66.6 4.6 36 981-1016 7-42 (182)
360 PF06309 Torsin: Torsin; Inte 96.2 0.016 3.6E-07 58.8 8.2 52 950-1008 26-77 (127)
361 cd00544 CobU Adenosylcobinamid 96.2 0.02 4.3E-07 61.0 9.2 71 987-1059 2-89 (169)
362 PRK05800 cobU adenosylcobinami 96.2 0.025 5.4E-07 60.3 9.8 69 986-1058 3-91 (170)
363 PRK10867 signal recognition pa 96.2 0.13 2.8E-06 62.5 17.1 73 983-1055 99-195 (433)
364 TIGR00416 sms DNA repair prote 96.2 0.021 4.5E-07 69.8 10.5 76 982-1057 92-184 (454)
365 cd01128 rho_factor Transcripti 96.2 0.036 7.8E-07 62.6 11.5 26 985-1010 17-42 (249)
366 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.04 8.7E-07 61.4 11.8 39 978-1017 16-57 (237)
367 PRK14532 adenylate kinase; Pro 96.2 0.0044 9.6E-08 66.0 4.1 30 986-1015 2-31 (188)
368 PRK06217 hypothetical protein; 96.2 0.0048 1E-07 65.9 4.2 31 986-1016 3-33 (183)
369 TIGR02533 type_II_gspE general 96.1 0.019 4.1E-07 70.7 9.9 94 945-1053 218-321 (486)
370 PHA02774 E1; Provisional 96.1 0.036 7.8E-07 68.7 12.1 33 985-1017 435-468 (613)
371 PF10236 DAP3: Mitochondrial r 96.1 0.21 4.6E-06 58.2 17.9 127 1032-1159 142-307 (309)
372 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0045 9.7E-08 65.5 3.9 33 987-1021 2-34 (183)
373 PRK13949 shikimate kinase; Pro 96.1 0.0046 9.9E-08 65.6 3.9 32 985-1016 2-33 (169)
374 TIGR02881 spore_V_K stage V sp 96.1 0.058 1.2E-06 61.0 12.9 34 483-518 33-66 (261)
375 TIGR02525 plasmid_TraJ plasmid 96.1 0.016 3.5E-07 68.9 8.8 68 986-1053 151-235 (372)
376 TIGR02858 spore_III_AA stage I 96.1 0.012 2.6E-07 67.1 7.4 69 985-1053 112-204 (270)
377 COG3854 SpoIIIAA ncharacterize 96.1 0.025 5.5E-07 62.5 9.4 71 985-1055 138-230 (308)
378 KOG3347 Predicted nucleotide k 96.1 0.0045 9.7E-08 64.1 3.5 32 985-1016 8-39 (176)
379 cd00984 DnaB_C DnaB helicase C 96.1 0.049 1.1E-06 60.3 11.8 36 982-1017 11-50 (242)
380 PRK13764 ATPase; Provisional 96.1 0.016 3.5E-07 72.6 8.8 68 985-1053 258-334 (602)
381 PF04665 Pox_A32: Poxvirus A32 96.1 0.063 1.4E-06 60.4 12.6 132 983-1131 12-169 (241)
382 PRK10536 hypothetical protein; 96.1 0.051 1.1E-06 61.6 11.9 22 986-1007 76-97 (262)
383 PRK14531 adenylate kinase; Pro 96.0 0.0062 1.3E-07 65.1 4.3 31 985-1015 3-33 (183)
384 PF06745 KaiC: KaiC; InterPro 96.0 0.073 1.6E-06 58.5 12.9 73 983-1055 18-127 (226)
385 PRK06762 hypothetical protein; 96.0 0.014 3.1E-07 60.8 7.0 37 985-1021 3-39 (166)
386 PRK06067 flagellar accessory p 96.0 0.05 1.1E-06 60.3 11.5 74 983-1056 24-133 (234)
387 TIGR01420 pilT_fam pilus retra 96.0 0.013 2.8E-07 69.1 7.1 69 985-1053 123-205 (343)
388 PRK12723 flagellar biosynthesi 96.0 0.066 1.4E-06 64.2 13.0 129 984-1126 174-329 (388)
389 KOG2383 Predicted ATPase [Gene 96.0 0.029 6.2E-07 66.2 9.7 28 981-1008 111-138 (467)
390 cd02020 CMPK Cytidine monophos 96.0 0.0061 1.3E-07 61.6 3.8 30 987-1016 2-31 (147)
391 PRK10436 hypothetical protein; 96.0 0.025 5.3E-07 69.2 9.6 94 945-1053 194-297 (462)
392 KOG2543 Origin recognition com 96.0 0.059 1.3E-06 63.4 12.0 59 950-1019 7-65 (438)
393 cd01393 recA_like RecA is a b 96.0 0.043 9.3E-07 60.1 10.6 37 983-1019 18-63 (226)
394 cd01428 ADK Adenylate kinase ( 96.0 0.006 1.3E-07 64.9 3.8 29 987-1015 2-30 (194)
395 PRK08233 hypothetical protein; 96.0 0.037 8E-07 58.2 9.7 33 985-1017 4-37 (182)
396 TIGR02782 TrbB_P P-type conjug 96.0 0.022 4.9E-07 65.9 8.8 69 985-1053 133-214 (299)
397 PRK09354 recA recombinase A; P 95.9 0.043 9.3E-07 64.8 10.9 73 985-1057 61-152 (349)
398 PRK05973 replicative DNA helic 95.9 0.073 1.6E-06 59.7 12.2 36 982-1017 62-100 (237)
399 cd02021 GntK Gluconate kinase 95.9 0.0068 1.5E-07 62.1 3.8 29 987-1015 2-30 (150)
400 PF00448 SRP54: SRP54-type pro 95.9 0.047 1E-06 59.5 10.4 108 984-1103 1-131 (196)
401 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.028 6E-07 61.9 8.8 37 983-1019 18-63 (235)
402 COG2804 PulE Type II secretory 95.9 0.02 4.4E-07 69.6 8.2 98 940-1053 229-337 (500)
403 PRK14530 adenylate kinase; Pro 95.9 0.0076 1.7E-07 66.0 4.3 30 986-1015 5-34 (215)
404 cd00046 DEXDc DEAD-like helica 95.8 0.015 3.2E-07 56.5 5.7 23 986-1008 2-24 (144)
405 COG0563 Adk Adenylate kinase a 95.8 0.0083 1.8E-07 64.4 4.1 28 986-1013 2-29 (178)
406 COG5245 DYN1 Dynein, heavy cha 95.8 0.05 1.1E-06 71.8 11.4 138 984-1134 1494-1660(3164)
407 cd01122 GP4d_helicase GP4d_hel 95.8 0.065 1.4E-06 60.4 11.4 35 983-1017 29-67 (271)
408 KOG3928 Mitochondrial ribosome 95.8 0.18 3.8E-06 60.1 14.9 115 1044-1163 316-458 (461)
409 PTZ00088 adenylate kinase 1; P 95.7 0.0089 1.9E-07 66.6 4.2 32 985-1016 7-38 (229)
410 TIGR01313 therm_gnt_kin carboh 95.7 0.008 1.7E-07 62.6 3.4 28 987-1014 1-28 (163)
411 COG0703 AroK Shikimate kinase 95.7 0.0084 1.8E-07 63.9 3.5 32 985-1016 3-34 (172)
412 COG4619 ABC-type uncharacteriz 95.7 0.036 7.8E-07 58.8 8.0 26 983-1008 28-53 (223)
413 TIGR02538 type_IV_pilB type IV 95.7 0.034 7.3E-07 69.8 9.4 93 946-1053 293-395 (564)
414 PRK13900 type IV secretion sys 95.7 0.029 6.3E-07 65.9 8.3 69 985-1053 161-245 (332)
415 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.087 1.9E-06 59.7 11.7 35 983-1017 35-72 (259)
416 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.084 1.8E-06 58.1 11.3 22 985-1006 30-51 (213)
417 PRK03731 aroL shikimate kinase 95.6 0.011 2.5E-07 61.9 4.3 32 985-1016 3-34 (171)
418 TIGR00959 ffh signal recogniti 95.6 0.53 1.1E-05 57.3 18.8 73 983-1055 98-194 (428)
419 cd00227 CPT Chloramphenicol (C 95.6 0.0094 2E-07 63.1 3.6 34 985-1018 3-36 (175)
420 cd02027 APSK Adenosine 5'-phos 95.6 0.03 6.5E-07 58.1 7.2 66 987-1052 2-79 (149)
421 COG0541 Ffh Signal recognition 95.6 1.7 3.7E-05 52.5 22.2 204 982-1216 98-340 (451)
422 PRK14528 adenylate kinase; Pro 95.6 0.012 2.5E-07 63.3 4.1 31 985-1015 2-32 (186)
423 cd01130 VirB11-like_ATPase Typ 95.6 0.051 1.1E-06 58.3 9.0 69 985-1053 26-110 (186)
424 smart00487 DEXDc DEAD-like hel 95.6 0.061 1.3E-06 55.6 9.3 24 985-1008 25-49 (201)
425 TIGR01360 aden_kin_iso1 adenyl 95.5 0.012 2.7E-07 62.1 4.1 31 985-1015 4-34 (188)
426 PRK06547 hypothetical protein; 95.5 0.013 2.8E-07 62.5 4.3 34 983-1016 14-47 (172)
427 cd03243 ABC_MutS_homologs The 95.5 0.08 1.7E-06 57.5 10.4 21 985-1005 30-50 (202)
428 PF13479 AAA_24: AAA domain 95.5 0.048 1E-06 59.9 8.7 67 985-1055 4-80 (213)
429 PRK13946 shikimate kinase; Pro 95.5 0.012 2.6E-07 63.0 3.8 32 985-1016 11-42 (184)
430 TIGR00635 ruvB Holliday juncti 95.5 0.073 1.6E-06 61.1 10.5 33 492-526 30-62 (305)
431 PRK08154 anaerobic benzoate ca 95.5 0.023 4.9E-07 66.1 6.3 36 981-1016 130-165 (309)
432 COG4088 Predicted nucleotide k 95.5 0.06 1.3E-06 58.8 8.9 23 986-1008 3-25 (261)
433 smart00534 MUTSac ATPase domai 95.5 0.11 2.3E-06 55.8 11.0 19 987-1005 2-20 (185)
434 PRK05057 aroK shikimate kinase 95.5 0.014 3E-07 62.0 4.2 33 985-1017 5-37 (172)
435 PRK02496 adk adenylate kinase; 95.4 0.013 2.7E-07 62.5 3.9 30 986-1015 3-32 (184)
436 cd03216 ABC_Carb_Monos_I This 95.4 0.06 1.3E-06 56.5 8.8 72 983-1054 25-111 (163)
437 cd03280 ABC_MutS2 MutS2 homolo 95.4 0.093 2E-06 56.9 10.4 21 985-1005 29-49 (200)
438 PRK04328 hypothetical protein; 95.4 0.12 2.7E-06 58.2 11.7 36 982-1017 21-59 (249)
439 TIGR01351 adk adenylate kinase 95.4 0.013 2.8E-07 63.9 3.8 29 987-1015 2-30 (210)
440 PLN02200 adenylate kinase fami 95.4 0.016 3.5E-07 64.8 4.5 36 984-1021 43-78 (234)
441 KOG0245 Kinesin-like protein [ 95.4 0.036 7.7E-07 71.0 7.9 80 151-237 476-558 (1221)
442 PRK00279 adk adenylate kinase; 95.3 0.015 3.3E-07 63.6 4.2 30 986-1015 2-31 (215)
443 COG1066 Sms Predicted ATP-depe 95.3 0.11 2.3E-06 62.0 11.0 97 982-1078 91-205 (456)
444 PF09848 DUF2075: Uncharacteri 95.3 0.036 7.9E-07 65.4 7.4 23 986-1008 3-25 (352)
445 TIGR03574 selen_PSTK L-seryl-t 95.3 0.034 7.4E-07 62.3 6.8 34 987-1020 2-38 (249)
446 COG1102 Cmk Cytidylate kinase 95.3 0.015 3.2E-07 61.2 3.6 29 986-1014 2-30 (179)
447 PRK06581 DNA polymerase III su 95.3 0.41 8.9E-06 53.9 14.9 132 985-1135 16-164 (263)
448 COG2909 MalT ATP-dependent tra 95.3 0.18 3.9E-06 64.5 13.5 152 985-1155 38-228 (894)
449 PRK13833 conjugal transfer pro 95.3 0.059 1.3E-06 63.1 8.8 69 985-1053 145-225 (323)
450 TIGR03880 KaiC_arch_3 KaiC dom 95.2 0.15 3.3E-06 56.1 11.6 35 983-1017 15-52 (224)
451 PRK10416 signal recognition pa 95.2 0.3 6.5E-06 57.2 14.5 35 983-1017 113-150 (318)
452 PF01583 APS_kinase: Adenylyls 95.2 0.04 8.6E-07 58.1 6.6 68 985-1052 3-82 (156)
453 PRK11889 flhF flagellar biosyn 95.2 0.15 3.3E-06 61.1 12.0 72 984-1055 241-332 (436)
454 PRK13894 conjugal transfer ATP 95.2 0.063 1.4E-06 62.8 8.9 69 985-1053 149-229 (319)
455 TIGR00064 ftsY signal recognit 95.2 0.43 9.4E-06 54.7 15.5 36 983-1018 71-109 (272)
456 PF05272 VirE: Virulence-assoc 95.2 0.031 6.8E-07 61.0 6.0 111 985-1117 53-168 (198)
457 PF13238 AAA_18: AAA domain; P 95.2 0.015 3.3E-07 57.0 3.2 22 987-1008 1-22 (129)
458 PRK12724 flagellar biosynthesi 95.1 0.22 4.9E-06 60.1 13.1 33 985-1017 224-260 (432)
459 PF13481 AAA_25: AAA domain; P 95.1 0.076 1.7E-06 56.5 8.4 73 986-1058 34-156 (193)
460 PRK14527 adenylate kinase; Pro 95.0 0.019 4.1E-07 61.7 3.7 32 984-1015 6-37 (191)
461 PRK04040 adenylate kinase; Pro 95.0 0.024 5.1E-07 61.3 4.3 29 985-1013 3-33 (188)
462 TIGR02788 VirB11 P-type DNA tr 95.0 0.035 7.6E-07 64.4 6.0 70 984-1053 144-228 (308)
463 PF08433 KTI12: Chromatin asso 95.0 0.074 1.6E-06 60.8 8.4 69 987-1055 4-82 (270)
464 PF06414 Zeta_toxin: Zeta toxi 95.0 0.062 1.4E-06 58.2 7.5 41 983-1023 14-55 (199)
465 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.1 2.2E-06 54.1 8.7 71 983-1054 24-109 (157)
466 cd03115 SRP The signal recogni 94.9 0.09 2E-06 55.3 8.4 32 987-1018 3-37 (173)
467 TIGR00767 rho transcription te 94.9 0.067 1.5E-06 64.1 8.1 26 984-1009 168-193 (415)
468 PRK04182 cytidylate kinase; Pr 94.9 0.024 5.2E-07 59.4 3.9 29 986-1014 2-30 (180)
469 PLN02674 adenylate kinase 94.9 0.025 5.5E-07 63.6 4.3 33 983-1015 30-62 (244)
470 PF00406 ADK: Adenylate kinase 94.9 0.023 4.9E-07 58.6 3.6 32 989-1022 1-32 (151)
471 COG2805 PilT Tfp pilus assembl 94.9 0.061 1.3E-06 61.7 7.2 70 985-1054 125-209 (353)
472 TIGR01448 recD_rel helicase, p 94.9 0.088 1.9E-06 67.9 9.6 97 986-1099 340-455 (720)
473 PRK06696 uridine kinase; Valid 94.8 0.061 1.3E-06 59.4 7.1 38 984-1021 22-62 (223)
474 PRK09519 recA DNA recombinatio 94.8 0.15 3.2E-06 65.8 11.2 75 983-1057 59-152 (790)
475 PRK13851 type IV secretion sys 94.8 0.037 8E-07 65.3 5.5 70 984-1053 162-246 (344)
476 PRK00149 dnaA chromosomal repl 94.8 0.072 1.6E-06 65.0 8.1 57 449-519 117-173 (450)
477 COG1936 Predicted nucleotide k 94.8 0.021 4.6E-07 60.8 3.0 30 986-1016 2-31 (180)
478 PF13521 AAA_28: AAA domain; P 94.7 0.028 6E-07 58.7 3.9 27 987-1014 2-28 (163)
479 TIGR02655 circ_KaiC circadian 94.7 0.15 3.2E-06 63.0 10.8 75 982-1056 261-366 (484)
480 TIGR02173 cyt_kin_arch cytidyl 94.7 0.028 6E-07 58.5 3.9 30 986-1015 2-31 (171)
481 PF10443 RNA12: RNA12 protein; 94.7 1.5 3.2E-05 53.1 18.5 79 1100-1178 197-300 (431)
482 PRK01184 hypothetical protein; 94.7 0.027 5.8E-07 59.9 3.8 29 986-1015 3-31 (184)
483 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.22 4.8E-06 54.8 10.9 36 982-1017 18-56 (229)
484 PRK04301 radA DNA repair and r 94.6 0.13 2.9E-06 59.9 9.5 36 984-1019 102-146 (317)
485 TIGR01526 nadR_NMN_Atrans nico 94.6 0.054 1.2E-06 63.5 6.2 34 985-1018 163-196 (325)
486 PRK13407 bchI magnesium chelat 94.6 1 2.2E-05 53.3 16.6 87 795-882 187-289 (334)
487 TIGR00390 hslU ATP-dependent p 94.6 0.037 8.1E-07 66.5 4.8 77 458-538 14-93 (441)
488 cd03222 ABC_RNaseL_inhibitor T 94.5 0.1 2.3E-06 56.0 7.7 71 983-1054 24-100 (177)
489 TIGR02524 dot_icm_DotB Dot/Icm 94.5 0.095 2.1E-06 62.3 8.2 69 985-1053 135-222 (358)
490 PTZ00202 tuzin; Provisional 94.5 0.72 1.6E-05 56.0 15.1 60 948-1018 261-320 (550)
491 COG1855 ATPase (PilT family) [ 94.5 0.036 7.8E-07 66.1 4.4 113 855-1008 173-287 (604)
492 PHA02530 pseT polynucleotide k 94.5 0.032 7E-07 63.9 4.0 31 985-1015 3-34 (300)
493 TIGR02236 recomb_radA DNA repa 94.5 0.16 3.4E-06 58.9 9.7 35 985-1019 96-139 (310)
494 TIGR03499 FlhF flagellar biosy 94.5 0.18 3.9E-06 58.0 9.9 36 984-1019 194-234 (282)
495 PF09336 Vps4_C: Vps4 C termin 94.4 0.027 5.8E-07 50.4 2.5 35 1201-1237 28-62 (62)
496 PRK08099 bifunctional DNA-bind 94.4 0.066 1.4E-06 64.5 6.6 30 985-1014 220-249 (399)
497 PF13086 AAA_11: AAA domain; P 94.4 0.029 6.3E-07 60.4 3.3 22 987-1008 20-41 (236)
498 PRK14526 adenylate kinase; Pro 94.4 0.04 8.6E-07 60.7 4.3 29 986-1014 2-30 (211)
499 cd01125 repA Hexameric Replica 94.4 0.24 5.2E-06 55.2 10.5 21 987-1007 4-24 (239)
500 TIGR01425 SRP54_euk signal rec 94.4 0.22 4.7E-06 60.5 10.8 73 983-1055 99-194 (429)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-65 Score=590.35 Aligned_cols=554 Identities=31% Similarity=0.448 Sum_probs=428.4
Q ss_pred CCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000858 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1251)
Q Consensus 446 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~l 525 (1251)
....+|+|..+--. +.|-.-|..-. .|++|+++-.|+--.+ .+.+||-|||| -...|||.|+|.++|+++|-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~P--prGvLlHGPPG--CGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVRP--PRGVLLHGPPG--CGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCCC--CCceeeeCCCC--ccHHHHHHHHhhhcCCceEee
Confidence 45568899998876 55555555544 4899999855544333 47899999999 799999999999999999988
Q ss_pred eccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCee
Q 000858 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1251)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1251)
-...+-+|.+.|+|
T Consensus 255 sApeivSGvSGESE------------------------------------------------------------------ 268 (802)
T KOG0733|consen 255 SAPEIVSGVSGESE------------------------------------------------------------------ 268 (802)
T ss_pred cchhhhcccCcccH------------------------------------------------------------------
Confidence 76666555554441
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcchh
Q 000858 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1251)
Q Consensus 606 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 685 (1251)
T Consensus 269 -------------------------------------------------------------------------------- 268 (802)
T KOG0733|consen 269 -------------------------------------------------------------------------------- 268 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-----cChhhHHHHHH----HHhcCC------CCEEEEeeccCCCcc
Q 000858 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT-----GNNDAYGALKS----KLENLP------SNVVVIGSHTQLDSR 750 (1251)
Q Consensus 686 ~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~-----~~~~~~~~l~~----~L~~L~------g~VvvIgs~~~~d~~ 750 (1251)
-.|++||+-+.+ ..|.||||||||. +. .+.++-..|++ -++.|. .+||||||||
T Consensus 269 --kkiRelF~~A~~---~aPcivFiDeIDA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn----- 337 (802)
T KOG0733|consen 269 --KKIRELFDQAKS---NAPCIVFIDEIDA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN----- 337 (802)
T ss_pred --HHHHHHHHHHhc---cCCeEEEeecccc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC-----
Confidence 116667766666 9999999999999 55 23444444444 444442 3899999999
Q ss_pred cccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhh
Q 000858 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 828 (1251)
Q Consensus 751 k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lp 828 (1251)
+||++|+ |||| ||++++.+..|
T Consensus 338 -------------------------RPDslDp-------------------------------aLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 338 -------------------------RPDSLDP-------------------------------ALRRAGRFDREICLGVP 361 (802)
T ss_pred -------------------------CCcccCH-------------------------------HHhccccccceeeecCC
Confidence 7888888 9999 99999999999
Q ss_pred hhhcccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCccccccC--------
Q 000858 829 TLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTE-------- 898 (1251)
Q Consensus 829 d~~gR~~Il~IhT~-l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~Id~~-------- 898 (1251)
+..+|..||+|.-+ |+-.+ +.++..||.+|.||-||||.+||.+|+..|+.|..++... ..+..++..
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~ 439 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEE 439 (802)
T ss_pred chHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccc
Confidence 99999999999876 55544 7889999999999999999999999999999998764431 111111111
Q ss_pred ---chhhhHH-----HHh----hh-hhhhhhhhhhhh--hccchhHHHHhhhcCCCCC-------CCCCCCcccccCcHH
Q 000858 899 ---SIMYGLN-----ILQ----GI-QSESKSLKKSLK--DVVTENEFEKKLLADVIPP-------SDIGVTFDDIGALEN 956 (1251)
Q Consensus 899 ---sIkv~~~-----df~----~a-l~eik~~~~slk--~iv~~~e~ek~ll~~vIp~-------~e~~~tfddI~Gle~ 956 (1251)
+|+.... ++. .+ ++..-+...... -.+..++|+..+. .+.|. .-++++|+|||++++
T Consensus 440 d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~ 518 (802)
T KOG0733|consen 440 DQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEE 518 (802)
T ss_pred hhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHH
Confidence 1211000 000 00 001111110000 0133455665542 12222 123789999999999
Q ss_pred HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHH
Q 000858 957 VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVF 1036 (1251)
Q Consensus 957 vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF 1036 (1251)
++.+|..+|.+|+++|++|...|+.. |.|||||||||||||.||+|+|++.|++|+.|.+++|+++|+|++|..++++|
T Consensus 519 vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vF 597 (802)
T KOG0733|consen 519 VRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVF 597 (802)
T ss_pred HHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999765 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHh--cccccc
Q 000858 1037 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 1114 (1251)
Q Consensus 1037 ~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I 1114 (1251)
..|+..+|||||+||||.|++.|...+ .....+++++|++.|||+... ..|.|||+||+|+.+|++++| ||+..+
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~L 674 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLL 674 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc--cceEEEeecCCCcccchhhcCCCccCcee
Confidence 999999999999999999999887644 667789999999999999754 789999999999999999999 999999
Q ss_pred cCCCCCHHHHHHHHHHHHh--hcccCChhcHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 000858 1115 MVNLPDAPNREKIIRVILA--KEELASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1190 (1251)
Q Consensus 1115 ~l~lPd~eeR~eIL~~ll~--k~~l~~dvdl~~LA~~T~--GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~ 1190 (1251)
++++|+.++|..||+.+.+ +..+.+++|+++||..+. ||+|+||..||++|...|+++.+...+. +..
T Consensus 675 yV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~--------~~~ 746 (802)
T KOG0733|consen 675 YVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS--------SED 746 (802)
T ss_pred eecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc--------cCc
Confidence 9999999999999999999 677889999999999887 9999999999999999999986653221 111
Q ss_pred CCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHhcC
Q 000858 1191 SPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1238 (1251)
Q Consensus 1191 ~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~ 1238 (1251)
.- ........+++.||++|+++++||++..... .|...+..+|+
T Consensus 747 ~~--~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~--~Yd~l~k~~~L 790 (802)
T KOG0733|consen 747 DV--TVRSSTIIVTYKHFEEAFQRIRPSVSERDRK--KYDRLNKSRSL 790 (802)
T ss_pred cc--ceeeeeeeecHHHHHHHHHhcCCCccHHHHH--HHHHHhhhhcc
Confidence 00 0000123589999999999999999876443 34444444443
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-60 Score=561.30 Aligned_cols=392 Identities=32% Similarity=0.530 Sum_probs=346.2
Q ss_pred CC-CeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCCCCceeeccCcchhhh
Q 000858 703 SS-PLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 771 (1251)
Q Consensus 703 ~~-P~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L~--g~VvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l 771 (1251)
.+ |.||||+|+|. ++. ..++...+...++.+. +.||||+++|
T Consensus 276 ~~~psii~IdEld~-l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atn-------------------------- 328 (693)
T KOG0730|consen 276 FQVPSIIFIDELDA-LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATN-------------------------- 328 (693)
T ss_pred cCCCeeEeHHhHhh-hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecC--------------------------
Confidence 55 99999999999 663 3456666666677776 7999999999
Q ss_pred ccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH-HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCc
Q 000858 772 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSVLSRNGLDC 850 (1251)
Q Consensus 772 ~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR-Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~ 850 (1251)
+|+.+|+ +++| ||++++++..|+..+|.+|+++||+.-+.. ++
T Consensus 329 ----rp~sld~-------------------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~ 372 (693)
T KOG0730|consen 329 ----RPDSLDP-------------------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SD 372 (693)
T ss_pred ----CccccCh-------------------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-ch
Confidence 6677776 9998 999999999999999999999999833332 78
Q ss_pred ccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhhhhhhhhhhhhhccchhHH
Q 000858 851 VDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEF 930 (1251)
Q Consensus 851 ~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~eik~~~~slk~iv~~~e~ 930 (1251)
++|+.+|..|.||.|+|+..+|++|...++++ ...+|+.++..+.+.--
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~psa~----------- 421 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR--------------------TLEIFQEALMGIRPSAL----------- 421 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCchhh-----------
Confidence 99999999999999999999999999988875 45666666555543210
Q ss_pred HHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000858 931 EKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1251)
Q Consensus 931 ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~ 1010 (1251)
..++ ..-++++|+||||++++|.+|++.|.+|+.+|+.|.+.++ .|++|||||||||||||++|+++|++.++
T Consensus 422 -----Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 422 -----REIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred -----hhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 0011 1234789999999999999999999999999999999985 56699999999999999999999999999
Q ss_pred cEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccE
Q 000858 1011 NFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1251)
Q Consensus 1011 ~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~V 1090 (1251)
+|+.+.+++|+++|+|++|+.++++|..|+..+|+|||+||||.+.+.|+... ..+..+++++++.+|||+... .+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~~--k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEAL--KNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHccccccc--CcE
Confidence 99999999999999999999999999999999999999999999999887433 378899999999999999765 789
Q ss_pred EEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000858 1091 LVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1251)
Q Consensus 1091 lVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~ 1168 (1251)
+|||+||+|+.||++++| ||++.|+|++|+.+.|.+||+.+++++.+.+++|++.||+.|+||||+||.++|++|+..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000858 1169 PIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1222 (1251)
Q Consensus 1169 airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e 1222 (1251)
++++.++ ...++.+||++|++.++++....
T Consensus 652 a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 652 ALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 9998543 34589999999999999998765
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-54 Score=485.39 Aligned_cols=377 Identities=60% Similarity=0.932 Sum_probs=340.6
Q ss_pred ccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhhhhhhhhhhhhh-ccchhHHHHhhhcC
Q 000858 859 KDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKD-VVTENEFEKKLLAD 937 (1251)
Q Consensus 859 ~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~eik~~~~slk~-iv~~~e~ek~ll~~ 937 (1251)
.+..+...-++.++.+|.+|++.++....+.. ..++..+++.++..+|+..... .+++. ++..++++..+...
T Consensus 7 ~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s~ 80 (386)
T KOG0737|consen 7 KDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIASD 80 (386)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhhc
Confidence 34455667788999999999998765443333 6777888888888787665433 34453 78899999999999
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000858 938 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1251)
Q Consensus 938 vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~ 1017 (1251)
+++|.++.++|+||+|++.++++|++.|.+|+++|++|+.+++.+|++|||||||||||||+||+|+|++.|++|+.|.+
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecC
Q 000858 1018 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1251)
Q Consensus 1018 s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN 1097 (1251)
+.+.++|+|+.++.++.+|..|.+.+|+||||||||.+++.| ...++++...+.++|+.+|||+.++++.+|+|+|+||
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999 6789999999999999999999999888999999999
Q ss_pred CCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000858 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1251)
Q Consensus 1098 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~ 1177 (1251)
+|.+||++++||++++++|++|+.++|.+|++.+++++.+.+++|+.++|.+|+||||+||+++|..|++.++|++++.+
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred --HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHhcCCCcc
Q 000858 1178 --KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 1242 (1251)
Q Consensus 1178 --~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~~R 1242 (1251)
..+.....+.....+........|+++++||..|+.+|.+++..+...|....+|++.||++++|
T Consensus 320 ~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 320 TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 22232233444444444555668999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7e-51 Score=511.36 Aligned_cols=538 Identities=29% Similarity=0.444 Sum_probs=421.2
Q ss_pred cccccccccccchhHHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000858 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1251)
Q Consensus 449 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1251)
-+++|+++--+ +..+..|.+.....++|+++. +++ + ...+.|||.||+| ..+.+||||||++++++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEec
Confidence 46889997766 888888888888888888764 232 2 3346799999999 78999999999999999877764
Q ss_pred cCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCeeee
Q 000858 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1251)
Q Consensus 528 ~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 607 (1251)
..+.+. |
T Consensus 246 ~~i~~~-------------------------------------------------------------------------~ 252 (733)
T TIGR01243 246 PEIMSK-------------------------------------------------------------------------Y 252 (733)
T ss_pred HHHhcc-------------------------------------------------------------------------c
Confidence 322210 0
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcchhHH
Q 000858 608 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 687 (1251)
Q Consensus 608 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k 687 (1251)
+|. ..
T Consensus 253 ~g~---------------------------------------------------------------------------~~ 257 (733)
T TIGR01243 253 YGE---------------------------------------------------------------------------SE 257 (733)
T ss_pred ccH---------------------------------------------------------------------------HH
Confidence 000 01
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCCC
Q 000858 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPG 757 (1251)
Q Consensus 688 ~~~~~l~evl~ses~~~P~Ilf~~die~~l~~~--------~~~~~~l~~~L~~L--~g~VvvIgs~~~~d~~k~k~~~~ 757 (1251)
-.+..+|+.+.. ..|.||||||+|.+.... .++.+.|...++.+ .+.|+|||++|
T Consensus 258 ~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn------------ 322 (733)
T TIGR01243 258 ERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN------------ 322 (733)
T ss_pred HHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC------------
Confidence 125566666554 789999999999955421 23344555556655 35899999999
Q ss_pred CceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccc
Q 000858 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 835 (1251)
Q Consensus 758 ~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~ 835 (1251)
.|+.+|+ +++| ||++++++++|+.+.|.+
T Consensus 323 ------------------~~~~ld~-------------------------------al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 323 ------------------RPDALDP-------------------------------ALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred ------------------ChhhcCH-------------------------------HHhCchhccEEEEeCCcCHHHHHH
Confidence 4444554 7877 999999999999999999
Q ss_pred hhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCC-Cccccc---cCchhhhHHHHhhh
Q 000858 836 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGI 910 (1251)
Q Consensus 836 Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~-~kl~Id---~~sIkv~~~df~~a 910 (1251)
|+++|+. .-.+ ++.+++.|+..+.||++++|..+|..|+..++.+..+....+ ....+. .....+...+|..+
T Consensus 354 Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 354 ILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999875 2223 577899999999999999999999999999998764411000 000011 13345667788777
Q ss_pred hhhhhhhhhhhhhccchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEE
Q 000858 911 QSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 990 (1251)
Q Consensus 911 l~eik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~ 990 (1251)
+..+.+... . ..+ ...+.++|++|+|++.+++.|++.+.+|+.+++.|.+.++ ++++|+|||
T Consensus 432 l~~v~ps~~--~--------------~~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~ 493 (733)
T TIGR01243 432 LKMVEPSAI--R--------------EVL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLF 493 (733)
T ss_pred Hhhcccccc--c--------------hhh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEE
Confidence 665554210 0 000 0112578999999999999999999999999999998874 466899999
Q ss_pred cCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHH
Q 000858 991 GPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 1070 (1251)
Q Consensus 991 GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~ 1070 (1251)
||||||||++|+++|++++++|+.+.++++.++|+|++++.++.+|..|+...|+||||||||.|++.+..........+
T Consensus 494 GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 573 (733)
T TIGR01243 494 GPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDR 573 (733)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765544556778
Q ss_pred HHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHH
Q 000858 1071 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1148 (1251)
Q Consensus 1071 il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~ 1148 (1251)
++++|+..++++... .+++||+|||+++.||++++| ||++.+++++|+.++|.+||+.++++..+..++++..||.
T Consensus 574 ~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 574 IVNQLLTEMDGIQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred HHHHHHHHhhcccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 999999999997643 679999999999999999998 9999999999999999999999999888888999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhh
Q 000858 1149 MADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNE 1228 (1251)
Q Consensus 1149 ~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~ 1228 (1251)
.|+||+|+||.++|++|+..++++.+.....+.... ..........++++||..|+++++||++.+ .+..
T Consensus 652 ~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~ 721 (733)
T TIGR01243 652 MTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV--------GEEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLR 721 (733)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc--------ccccccccCcccHHHHHHHHHHcCCCCCHH--HHHH
Confidence 999999999999999999999998654322111000 000011235799999999999999999877 4678
Q ss_pred hhhHHHHhc
Q 000858 1229 LLQWNELYG 1237 (1251)
Q Consensus 1229 ~v~W~DigG 1237 (1251)
+.+|...+|
T Consensus 722 ~~~~~~~~~ 730 (733)
T TIGR01243 722 YERLAKELK 730 (733)
T ss_pred HHHHHHHhc
Confidence 899988776
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-48 Score=463.46 Aligned_cols=440 Identities=27% Similarity=0.460 Sum_probs=336.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh----cCC-CCEEEEeeccCCCcccccCCCCCc
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGGL 759 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilf~~die~~l~~-----~~~~~~~l~~~L~----~L~-g~VvvIgs~~~~d~~k~k~~~~~~ 759 (1251)
+++.|....- .+|+||||++.|-+... .-++...|+-.|. +.+ ++++|||+++..++
T Consensus 479 l~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~---------- 545 (953)
T KOG0736|consen 479 LQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED---------- 545 (953)
T ss_pred HHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc----------
Confidence 3444444433 78888888888874331 1233444444444 323 48999999995444
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHH
Q 000858 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISI 839 (1251)
Q Consensus 760 ~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~I 839 (1251)
.| -.+-.+|...|+++.|++ .-|.+||++
T Consensus 546 ----------------lp-----------------~~i~~~f~~ei~~~~lse------------------~qRl~iLq~ 574 (953)
T KOG0736|consen 546 ----------------LP-----------------ADIQSLFLHEIEVPALSE------------------EQRLEILQW 574 (953)
T ss_pred ----------------CC-----------------HHHHHhhhhhccCCCCCH------------------HHHHHHHHH
Confidence 22 123334444444555544 444455555
Q ss_pred HHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCC----C-CCccccccCchhhhHHHHhhhhhh
Q 000858 840 RSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPG----K-DAKLKISTESIMYGLNILQGIQSE 913 (1251)
Q Consensus 840 hT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~----~-~~kl~Id~~sIkv~~~df~~al~e 913 (1251)
-+ ....+ .++.+..++.+|.||+-.+++.++..+...+..+-....+ . ...-.+-+....+...||..++.+
T Consensus 575 y~--~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~ 652 (953)
T KOG0736|consen 575 YL--NHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSR 652 (953)
T ss_pred HH--hccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHH
Confidence 31 12223 5678889999999999999999998875555544322111 1 111123334455666777665544
Q ss_pred hhhhhhhhhhccchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCC
Q 000858 914 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993 (1251)
Q Consensus 914 ik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPP 993 (1251)
++ .++...+.+..|| +++|+||||++++|.+|.+.+.+|+++|++|..+ .++..||||||||
T Consensus 653 ~~------------~~fs~aiGAPKIP----nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPP 714 (953)
T KOG0736|consen 653 LQ------------KEFSDAIGAPKIP----NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPP 714 (953)
T ss_pred HH------------HhhhhhcCCCCCC----ccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCC
Confidence 43 2344444454454 7999999999999999999999999999999876 4555799999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchH-HHHHHHH
Q 000858 994 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMK 1072 (1251)
Q Consensus 994 GTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~-e~~~~il 1072 (1251)
|||||.+|+|+|.++..+|+.|.+++|+++|+|++|+++|.+|+.|+..+|||||+||+|.|.++|+..++. ..+.+++
T Consensus 715 GTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVV 794 (953)
T KOG0736|consen 715 GTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVV 794 (953)
T ss_pred CCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876654 4889999
Q ss_pred HhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCC-HHHHHHHHHHHHhhcccCChhcHHHHHHH
Q 000858 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIANM 1149 (1251)
Q Consensus 1073 ~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd-~eeR~eIL~~ll~k~~l~~dvdl~~LA~~ 1149 (1251)
.+++.++||+.......|+|||+||+|+.||++++| ||++-+++.++. .+.+..+|+.+.+++.+..++++.+||+.
T Consensus 795 SQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~ 874 (953)
T KOG0736|consen 795 SQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKK 874 (953)
T ss_pred HHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhh
Confidence 999999999997667899999999999999999999 999999998875 67789999999999999999999999999
Q ss_pred cC-CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000858 1150 AD-GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1222 (1251)
Q Consensus 1150 T~-GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e 1222 (1251)
+. .|+|+|+..||..|+..|++|.+.....-. .+......+...|+|+||.+|+++++||++..
T Consensus 875 cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~---------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 875 CPPNMTGADLYSLCSDAMLAAIKRTIHDIESGT---------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred CCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcc---------ccccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 97 899999999999999999999766543211 01111223445799999999999999999875
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-45 Score=410.82 Aligned_cols=284 Identities=42% Similarity=0.717 Sum_probs=257.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 942 ~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
..+.+.|+||.|+.++|+-|+|+|.+|+..|++|. ++.+|.+|||++||||||||+||+|+|.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34568999999999999999999999999999997 5689999999999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccC--CccEEEEEecCCC
Q 000858 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRP 1099 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~--~~~VlVIaTTN~p 1099 (1251)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|+...++++.+++..+|+++|||+.... ...|+|+|+||.|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987643 1349999999999
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000858 1100 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1179 (1251)
Q Consensus 1100 ~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ 1179 (1251)
++||++++|||.++|+|++|+.+.|..+|+..+....+.++++++.|+..++||+|+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655332
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHhcC
Q 000858 1180 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1238 (1251)
Q Consensus 1180 ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~ 1238 (1251)
+.....+. ..-..+++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 443 ~ei~~lak---------E~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLAK---------EEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhhh---------hccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 22211111 11125799999999999999999865 56788999999996
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-45 Score=404.43 Aligned_cols=247 Identities=41% Similarity=0.697 Sum_probs=230.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
.+.++|+||||+++++++|++.|.+|+.+|++|.+.|+ .||+|||||||||||||+||+|+|++.++.|+.+.+++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 34789999999999999999999999999999999995 57799999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC--chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
+|+|++...++.+|..|+.++||||||||||.+.++|.+. +......+.+-+|+.+|||+.+. .+|-||++||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999988654 34445567778899999999764 7899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~ 1178 (1251)
.|||+++| ||++.|+|++|+.+.|.+||+.+.+++.+..++|++.||+.|+|+||+||+++|.+|.+.|+|+-
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999971
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccc
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1218 (1251)
Q Consensus 1179 ~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS 1218 (1251)
...+||+||.+|++++...
T Consensus 377 ---------------------R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 377 ---------------------RDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ---------------------cCeecHHHHHHHHHHHHhc
Confidence 2469999999999997643
No 8
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-44 Score=429.81 Aligned_cols=452 Identities=33% Similarity=0.481 Sum_probs=362.5
Q ss_pred eeeecCCCCcCCCCCCC--CCCCCCcccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccCh-
Q 000858 645 GVRFDRSIPEGNNLGGF--CEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN- 721 (1251)
Q Consensus 645 gV~fd~~~~~~~~l~~~--ce~~~~~~~~~~~~~~d~~~~~~~~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~~~- 721 (1251)
||.+..|...|.++.+. +.....+ ..-.-..+.+.|.......+..+|+-... ..|.|+|+++++.+.....
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~ 94 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANEGAEF--LSINGPEILSKYVGESELRLRELFEEAEK---LAPSIIFIDEIDALAPKRSS 94 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhccCcc--cccCcchhhhhhhhHHHHHHHHHHHHHHH---hCCCeEeechhhhcccCccc
Confidence 56667777777777721 1111112 11111112456666667777777777766 7789999999999766322
Q ss_pred -------hhHHHHHHHHhcCC-CCEEEEeeccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHH
Q 000858 722 -------DAYGALKSKLENLP-SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKA 793 (1251)
Q Consensus 722 -------~~~~~l~~~L~~L~-g~VvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~ 793 (1251)
...+.+...++.+. +.|+++|+++ .|+.+++
T Consensus 95 ~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~------------------------------~~~~~~~----------- 133 (494)
T COG0464 95 DQGEVERRVVAQLLALMDGLKRGQVIVIGATN------------------------------RPDGLDP----------- 133 (494)
T ss_pred cccchhhHHHHHHHHhcccccCCceEEEeecC------------------------------CccccCh-----------
Confidence 23444444444443 5689999888 4455555
Q ss_pred HHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHH
Q 000858 794 LKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKI 871 (1251)
Q Consensus 794 ~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~L 871 (1251)
++++ ||++++++.+|+..+|.+|+.+|+.++..+. ..+++.++..+.||.++++..+
T Consensus 134 --------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 134 --------------------AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred --------------------hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHH
Confidence 7777 9999999999999999999999998443332 7889999999999999999999
Q ss_pred HhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhhhhhhhhhhhhhccchhHHHHhhhcCCCCCCCCCCCcccc
Q 000858 872 VGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDI 951 (1251)
Q Consensus 872 v~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~eik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~tfddI 951 (1251)
|+.+..+++++.. ......+.+...+|..++.++.+. ..+......++|+++
T Consensus 193 ~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~~v~~~di 244 (494)
T COG0464 193 AKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS-------------------RGVLFEDEDVTLDDI 244 (494)
T ss_pred HHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc-------------------cccccCCCCcceehh
Confidence 9999999988754 222344555666665554443321 011122346899999
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHH
Q 000858 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKY 1031 (1251)
Q Consensus 952 ~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~ 1031 (1251)
+|++.+++.+++.+.+|+.+++.|.+.+ .+++.++|||||||||||+||+++|++++.+|+.+..+++.++|+|++++.
T Consensus 245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 245 GGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred hcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHH
Confidence 9999999999999999999999998755 456689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHh--c
Q 000858 1032 VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--R 1109 (1251)
Q Consensus 1032 I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--R 1109 (1251)
++.+|..|++.+|+||||||||.|+..|.... .....+++++++..|+++... .+|+||+|||+++.+|++++| |
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCc
Confidence 99999999999999999999999998886532 223378999999999998755 679999999999999999999 9
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhhcc--cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 000858 1110 LPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAE 1187 (1251)
Q Consensus 1110 F~~~I~l~lPd~eeR~eIL~~ll~k~~--l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e 1187 (1251)
|+..++|++|+.++|.+||+.++.... +..++++..+++.|+||+++||.++|++|++.++++..
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------------- 467 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------------- 467 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------------
Confidence 999999999999999999999999644 35789999999999999999999999999999988742
Q ss_pred ccCCCCCCCccccccccHHHHHHHHHHhccccc
Q 000858 1188 NRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1220 (1251)
Q Consensus 1188 ~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s 1220 (1251)
...++++||..|++++.|++.
T Consensus 468 ------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 ------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred ------------cCCccHHHHHHHHHhcCCCCC
Confidence 256999999999999999965
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=419.10 Aligned_cols=297 Identities=33% Similarity=0.577 Sum_probs=262.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
.++|.||||++....+|.+.+.. +.+|+.|...|+ .|++|||||||||||||+||+|||.+++.||+.++++++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67999999999999999999987 999999999985 5779999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccC--CccEEEEEecCCCCCC
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 1102 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~--~~~VlVIaTTN~p~~L 1102 (1251)
.|++|+.++.+|+.|+...|||+||||||.+.++|.. .+.+..++++.+|+..||++.... +.+|+||+|||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999998876 667788999999999999987653 4789999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH-
Q 000858 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK- 1179 (1251)
Q Consensus 1103 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~- 1179 (1251)
|++++| ||++.|.+..|+..+|.+||+.++++..+..++|+..||+.|.||.|+||.+||.+|+..|++|+++....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999875431
Q ss_pred -HHH-----------------HHH-----------------hhccCCCCCCCccccccccHHHHHHHHHHhccccccccc
Q 000858 1180 -ERA-----------------LAL-----------------AENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 1224 (1251)
Q Consensus 1180 -ek~-----------------l~~-----------------~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~ 1224 (1251)
... +.. ..+...+......+.-.|+++||++|+..++||..+++.
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 000 000 000000000001123468999999999999999999999
Q ss_pred chhhhhhHHHHhcCCCcccc
Q 000858 1225 NMNELLQWNELYGEGGSRKR 1244 (1251)
Q Consensus 1225 ~~~~~v~W~DigG~~~~Rk~ 1244 (1251)
..+|.+.|+||||++.+|..
T Consensus 503 ~tVPdVtW~dIGaL~~vR~e 522 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLE 522 (802)
T ss_pred eecCCCChhhcccHHHHHHH
Confidence 99999999999999998853
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-40 Score=387.85 Aligned_cols=298 Identities=31% Similarity=0.527 Sum_probs=253.1
Q ss_pred cccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhhhhhhhhhhhhhccchhH
Q 000858 850 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENE 929 (1251)
Q Consensus 850 ~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~eik~~~~slk~iv~~~e 929 (1251)
-.+|+.|+.+|.||..-|+.-+|.-|...|+... +....| ..+..+|..++....|..
T Consensus 595 ~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~ler---is~~~k--------lltke~f~ksL~~F~P~a----------- 652 (952)
T KOG0735|consen 595 MDDLDFLSVKTEGYLATDLVIFVERAIHEAFLER---ISNGPK--------LLTKELFEKSLKDFVPLA----------- 652 (952)
T ss_pred hHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH---hccCcc--------cchHHHHHHHHHhcChHH-----------
Confidence 3466779999999999999999999999988322 222222 234456655544333321
Q ss_pred HHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000858 930 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1251)
Q Consensus 930 ~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg 1009 (1251)
+.++-.....+..|+||+|+.++++.|++.+++|.++|.+|....+. -..|||||||||||||+||.++|..++
T Consensus 653 -----LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 653 -----LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred -----hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcc-cccceEEECCCCCcHHHHHHHHHhhCC
Confidence 11111111224789999999999999999999999999999987754 447999999999999999999999999
Q ss_pred CcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCcc
Q 000858 1010 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1251)
Q Consensus 1010 ~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~ 1089 (1251)
..||.+.+++|+++|+|.+|+.++.+|..|+..+|||||+||+|.+.++|+... .....+++++++.+|||...- ..
T Consensus 727 ~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Egl--~G 803 (952)
T KOG0735|consen 727 LRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEGL--DG 803 (952)
T ss_pred eeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhcccccc--ce
Confidence 999999999999999999999999999999999999999999999999987532 335678999999999997653 67
Q ss_pred EEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000858 1090 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~ 1167 (1251)
|.|+|+|.+|+.+|++++| |+++.++.++|+..+|.+|++.+.....+..++|++.+|.+|+||+|+||..|+-.|..
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988888899999999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 000858 1168 CPIREILEKEK 1178 (1251)
Q Consensus 1168 ~airriie~~~ 1178 (1251)
.++++++....
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99999876543
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-41 Score=364.36 Aligned_cols=299 Identities=36% Similarity=0.639 Sum_probs=256.4
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 936 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 936 ~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
+.-|-..++++.|+|+.|++.+|++|+++|.+|+..|.+|... .+|.+||||||||||||++||+|+|.+.+..|+.|
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3444456678999999999999999999999999999999754 67899999999999999999999999999999999
Q ss_pred ecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEe
Q 000858 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1251)
Q Consensus 1016 ~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaT 1095 (1251)
+.++|+++|.|++|+.++++|++|+.++|+||||||||.|++.|.. ++.+..+++..+|+++|.|.... ...|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG~d-~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVGND-NDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhccccC-CCceEEEec
Confidence 9999999999999999999999999999999999999999987754 67888999999999999998764 588999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc-cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHH
Q 000858 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1174 (1251)
Q Consensus 1096 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~-l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airrii 1174 (1251)
||-|+.||.+++|||.++|++++|+...|..+|+.++.... ...+.|+.+|+++|+||+|+||.-+++.|.+.++|++.
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 99999999999999999999999999999999999998754 34778999999999999999999999999999999987
Q ss_pred HHHHHHHHHH-----HhhccCCCCCCC---------------ccccccccHHHHHHHHHHhcccccccccchhhhhhHHH
Q 000858 1175 EKEKKERALA-----LAENRASPPLYS---------------SVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 1234 (1251)
Q Consensus 1175 e~~~~ek~l~-----~~e~~~~~~~~~---------------~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~D 1234 (1251)
...+..+.-. .......+..+. ..--.+|||.||..++...+|++... .+....++.+
T Consensus 356 sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft~ 433 (439)
T KOG0739|consen 356 SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFTE 433 (439)
T ss_pred hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHHH
Confidence 6655432110 000111111111 01135899999999999999999766 5567788999
Q ss_pred HhcCCC
Q 000858 1235 LYGEGG 1240 (1251)
Q Consensus 1235 igG~~~ 1240 (1251)
-+|.+|
T Consensus 434 dFGqEg 439 (439)
T KOG0739|consen 434 DFGQEG 439 (439)
T ss_pred hhccCC
Confidence 888775
No 12
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-38 Score=361.23 Aligned_cols=390 Identities=22% Similarity=0.279 Sum_probs=286.7
Q ss_pred HHHHHHHHHHHhhccC-----CCCeEEEEcChhhhhc-------cChhhHHHHH----HHHhcC--CCCEEEEeeccCCC
Q 000858 687 KLAINELFEVALNESK-----SSPLIVFVKDIEKSLT-------GNNDAYGALK----SKLENL--PSNVVVIGSHTQLD 748 (1251)
Q Consensus 687 k~~~~~l~evl~ses~-----~~P~Ilf~~die~~l~-------~~~~~~~~l~----~~L~~L--~g~VvvIgs~~~~d 748 (1251)
.--+.-||.=+-+|-| .+=-||.||+||. +| ++.-.|..++ +|++.. ..||+|||-||+
T Consensus 302 E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDA-ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR-- 378 (744)
T KOG0741|consen 302 EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDA-ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR-- 378 (744)
T ss_pred HHHHHHHHHhHHHHHHhhCccCCceEEEehhhHH-HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc--
Confidence 3347777777766665 3345999999999 66 3344444444 444433 239999999994
Q ss_pred cccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhh
Q 000858 749 SRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD 826 (1251)
Q Consensus 749 ~~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~ 826 (1251)
+|=+ |||||| ||++|+|+.
T Consensus 379 ----------------------------~DlI-------------------------------DEALLRPGRlEVqmEIs 399 (744)
T KOG0741|consen 379 ----------------------------KDLI-------------------------------DEALLRPGRLEVQMEIS 399 (744)
T ss_pred ----------------------------hhhH-------------------------------HHHhcCCCceEEEEEEe
Confidence 2333 459999 999999999
Q ss_pred hhhhhcccchhHHHHH-hhhCCC--CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhh
Q 000858 827 VETLKGQSNIISIRSV-LSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYG 903 (1251)
Q Consensus 827 Lpd~~gR~~Il~IhT~-l~~~~l--~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~ 903 (1251)
|||++||.+|++|||+ |+++++ .++||++||.+||||+||||++||++|.|+|+.|+.....+........+++++.
T Consensus 400 LPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~ 479 (744)
T KOG0741|consen 400 LPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVT 479 (744)
T ss_pred CCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeec
Confidence 9999999999999998 999987 9999999999999999999999999999999999876543333345667889999
Q ss_pred HHHHhhhhhhhhhhhhhhhhccchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCC
Q 000858 904 LNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP 983 (1251)
Q Consensus 904 ~~df~~al~eik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P 983 (1251)
.+||..++.+++|+++ ..+++++.....+++.+... ...+.+.-..++.+ ++.++ ..+
T Consensus 480 r~DFl~aL~dVkPAFG-----~see~l~~~~~~Gmi~~g~~---------v~~il~~G~llv~q-vk~s~-------~s~ 537 (744)
T KOG0741|consen 480 RGDFLNALEDVKPAFG-----ISEEDLERFVMNGMINWGPP---------VTRILDDGKLLVQQ-VKNSE-------RSP 537 (744)
T ss_pred HHHHHHHHHhcCcccC-----CCHHHHHHHHhCCceeeccc---------HHHHHhhHHHHHHH-hhccc-------cCc
Confidence 9999999999999998 66788899999998887643 12233332333332 22221 345
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-ccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~-L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~ 1062 (1251)
...+||+||||+|||+||..||...++||+.+-.++ +.+..-...-.+++.+|+.|++.+-+||++|+|++|+. .-+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD--~vp 615 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD--YVP 615 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc--ccc
Confidence 578999999999999999999999999999976654 44332222345799999999999999999999999972 334
Q ss_pred chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcH-HHHhcccccccCCCCCH-HHHHHHHHHHHhhcccCCh
Q 000858 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDA-PNREKIIRVILAKEELASD 1140 (1251)
Q Consensus 1063 ~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~-aLlrRF~~~I~l~lPd~-eeR~eIL~~ll~k~~l~~d 1140 (1251)
......+.+++.|+..+...+++. .+++|++||++.+.|.+ .+...|+..++++..+. ++-.+++.. .++..+
T Consensus 616 IGPRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~----~n~fsd 690 (744)
T KOG0741|consen 616 IGPRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE----LNIFSD 690 (744)
T ss_pred cCchhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH----ccCCCc
Confidence 445567889999999998877654 68999999988766654 46668987777765543 444444433 233334
Q ss_pred hcHHHHHHHcC----CCcHHHHHHHHHHHHh
Q 000858 1141 VDLEGIANMAD----GYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1141 vdl~~LA~~T~----GySgaDL~~L~~~Aa~ 1167 (1251)
.+...++.... +.-...|..|+++|..
T Consensus 691 ~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 691 DEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred chhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 44444444332 2334666667766653
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=355.26 Aligned_cols=268 Identities=36% Similarity=0.579 Sum_probs=236.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 942 ~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
....++|+|+-|.+++|++|+|.|.+ |+.|+.|.+.+ .+-|+||||+||||||||+||+|+|.+.+.||+...++++.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34478999999999999999999986 99999999987 55669999999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC
Q 000858 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1251)
..++|.+.+.++.+|..|++.+||||||||||.+.++|.+...+ ..++.+++|+..|||+..+ ..|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEeccCChhh
Confidence 99999999999999999999999999999999998888665444 8899999999999999865 78999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000858 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1179 (1251)
Q Consensus 1102 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ 1179 (1251)
||+++.| ||+++|.++.||...|.+||+.|+.+..+..++|+..||+-|.||+|+||.||++.|+..|...
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------- 524 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------- 524 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-------
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999776553
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHhcCCC
Q 000858 1180 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1240 (1251)
Q Consensus 1180 ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~ 1240 (1251)
....|+|.|++-|.+++-.-.-+....+.+.-+-.--|.++|
T Consensus 525 -------------------ga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~G 566 (752)
T KOG0734|consen 525 -------------------GAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGG 566 (752)
T ss_pred -------------------CcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccC
Confidence 124599999999999876555444333333333333444443
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9.9e-36 Score=355.98 Aligned_cols=410 Identities=22% Similarity=0.372 Sum_probs=297.0
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHH---HhcCCCCEEEEeeccCCCcccccCCCCCceeeccCc
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSK---LENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGS 766 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilf~~die~~l~~~~~~~~~l~~~---L~~L~g~VvvIgs~~~~d~~k~k~~~~~~~~~~~~~ 766 (1251)
+++| +.+......+|.|+.++|.+.++ .+..+...|+.. +...+..+||++....
T Consensus 68 ~~al-~~i~~~~~~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~-------------------- 125 (489)
T CHL00195 68 LQAL-EFIEKLTPETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASELN-------------------- 125 (489)
T ss_pred HHHH-HHHHhcCCCCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCCC--------------------
Confidence 4444 33333223458999999999977 444443333332 3333445666655331
Q ss_pred chhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhC
Q 000858 767 NQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRN 846 (1251)
Q Consensus 767 ~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l~~~ 846 (1251)
.|..+. +++ -.+++++|+.+.+..-.++... -...
T Consensus 126 ---------~p~el~-----------------~~~-~~~~~~lP~~~ei~~~l~~~~~------------------~~~~ 160 (489)
T CHL00195 126 ---------IPKELK-----------------DLI-TVLEFPLPTESEIKKELTRLIK------------------SLNI 160 (489)
T ss_pred ---------CCHHHH-----------------hce-eEEeecCcCHHHHHHHHHHHHH------------------hcCC
Confidence 333332 222 3557788877766543321110 0011
Q ss_pred CCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhhhhhhhhhhhhhccc
Q 000858 847 GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVT 926 (1251)
Q Consensus 847 ~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~eik~~~~slk~iv~ 926 (1251)
.++...++.|+..+.|++-.+++.++..+... .+ .++.+.+...+..- + .++.
T Consensus 161 ~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~-----------~~--~~~~~~~~~i~~~k-------~-------q~~~ 213 (489)
T CHL00195 161 KIDSELLENLTRACQGLSLERIRRVLSKIIAT-----------YK--TIDENSIPLILEEK-------K-------QIIS 213 (489)
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------cC--CCChhhHHHHHHHH-------H-------HHHh
Confidence 35677888999999999999999988753321 11 12223222222110 0 0000
Q ss_pred hhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000858 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1251)
Q Consensus 927 ~~e~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~ 1006 (1251)
. ..++.......+|++|+|++.+|+.|.+..... ...+...++ .+++||||+||||||||++|++||+
T Consensus 214 ~--------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 214 Q--------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred h--------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHH
Confidence 0 112222223578999999999999998755321 222334453 4669999999999999999999999
Q ss_pred HhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccC
Q 000858 1007 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1086 (1251)
Q Consensus 1007 elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~ 1086 (1251)
+++.+|+.++++.+.+.++|+++..++++|..|+..+||||||||||.++..+...+......+++.+|+..++..
T Consensus 282 e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---- 357 (489)
T CHL00195 282 DWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---- 357 (489)
T ss_pred HhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----
Confidence 9999999999999999999999999999999999999999999999999876554445566788899998887642
Q ss_pred CccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccC--ChhcHHHHHHHcCCCcHHHHHHHH
Q 000858 1087 KERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGIANMADGYSGSDLKNLC 1162 (1251)
Q Consensus 1087 ~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~--~dvdl~~LA~~T~GySgaDL~~L~ 1162 (1251)
..+|+||||||+++.||++++| ||+..+++++|+.++|.+||+.++.+.... .+.+++.||..|+||+|+||.++|
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 3679999999999999999998 999999999999999999999999986433 578899999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHh
Q 000858 1163 VTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1236 (1251)
Q Consensus 1163 ~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~Dig 1236 (1251)
.+|+..+..+ .++++.+||..|++++.|++......+..+++|-.-+
T Consensus 438 ~eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 438 IEAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 9998766542 1569999999999999999877777788999997654
No 15
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-36 Score=345.84 Aligned_cols=279 Identities=47% Similarity=0.807 Sum_probs=253.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000858 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1251)
Q Consensus 944 ~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~ 1023 (1251)
..+.|+|+.|++.+++.+.+++.+|+.++++|.. +..|.+++||+||||+|||+|++|||.+.++.|+.++++.|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3678999999999999999999999999999974 46788999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCc
Q 000858 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1251)
Q Consensus 1024 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1251)
|.|+.++.++.+|..|+..+|+||||||||.++..| .+..++..+++..+|+.++++.......+|+||+|||+|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999 6678888899999999999999988888999999999999999
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHhhc-ccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000858 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1182 (1251)
Q Consensus 1104 ~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~-~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~ 1182 (1251)
++++|||..++++++|+.+.|..+|+.++.+. +...+.+++.|++.|+||+++||.++|..|++..++.+......+
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~-- 382 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE-- 382 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh--
Confidence 99999999999999999999999999999987 334678999999999999999999999999999988764321111
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHhcCCC
Q 000858 1183 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1240 (1251)
Q Consensus 1183 l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~ 1240 (1251)
.......|+++..||+.|++.++++++.. ....+..|+..+|...
T Consensus 383 -----------~~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 -----------FIDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hcchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 12345678999999999999999999988 5567889999999754
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=317.36 Aligned_cols=245 Identities=31% Similarity=0.574 Sum_probs=224.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
.+..++.||||++..+++|.+++.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|.+.+..|..+.++.|..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 34568999999999999999999999999999999985 57799999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCc--hHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
.|+|.+.+.++..|..|+..+|+||||||+|.+..+|.... ......+.+.+++.+++|+.+. .+|-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 99999999999999999999999999999999988886532 2334456667899999999875 7899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~ 1178 (1251)
.|||+++| |+++.|+|+.|+.+.|.+|++.+.+++.+.+++++++||+.|++|+|++++++|.+|.+.|+|+-
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~----- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG----- 396 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1179 ~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
...++-+||.+++.+++
T Consensus 397 ---------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ---------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------------cccccHHHHHHHHHHHH
Confidence 23588899999998865
No 17
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-34 Score=306.53 Aligned_cols=245 Identities=37% Similarity=0.626 Sum_probs=225.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 942 ~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
.++.+++.||||++-.|+++++.+.+|+.+.++|.+-++. ||+|||+|||||||||+||+|+|+...+.|+.+.++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 4567899999999999999999999999999999998854 679999999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC--chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC
Q 000858 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1099 (1251)
.+|.|++...++.+|..|+..+|+||||||||.+..+|... +......+++-+++.+|+|+... .+|-||++||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 99999999999999999999999999999999999888653 34456678899999999999765 789999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000858 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1251)
Q Consensus 1100 ~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~ 1177 (1251)
+.|||+++| |+++.|+|++|+..+++-+|..+..++.+.+++|++.+...-+..+++||..+|++|.+.|+|+.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n---- 380 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN---- 380 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999962
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000858 1178 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1215 (1251)
Q Consensus 1178 ~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v 1215 (1251)
.-.+...||++|.+.+
T Consensus 381 ----------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ----------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ----------------------ceeeeHHHHHHHHHhh
Confidence 1246778999988764
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-34 Score=304.01 Aligned_cols=244 Identities=35% Similarity=0.612 Sum_probs=223.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
+.+++-+||++.+++++++.+.+|..+|++|...++..| +|+|||||||||||.||+++|++..+.|+.+++++|..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 567888999999999999999999999999999998776 8999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC--CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCC
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1251)
+|++...++.+|-+|+.++|+|||+||||.+...|.. .+......+.+.+++.++||+... .++-||++||+.+.|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 9999999999999999999999999999999876632 233445566777899999999765 679999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000858 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1180 (1251)
Q Consensus 1103 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~e 1180 (1251)
|++++| |+++.|+|++|+.+.|.+|++.+-+++++...+++..+|....|-+|++++.+|.+|.+.|+|+-
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000858 1181 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1217 (1251)
Q Consensus 1181 k~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~p 1217 (1251)
...+|.+||+-|+.++-.
T Consensus 373 -------------------rvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHh
Confidence 134899999999988643
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-35 Score=315.76 Aligned_cols=244 Identities=39% Similarity=0.647 Sum_probs=223.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
..+|.||||++.++++|++.+.+|+.+|++|...++ +||+||+|||+||||||.||+|+|+...+.|+.+-+++|..+|
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 558999999999999999999999999999999984 6779999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC--chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCC
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1251)
.|++.+.++++|..|..++|+|+||||||.+..+|.+. +......+.+.+|+++++|+... ..|-||++||+.+.|
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnrie~L 337 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIETL 337 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEeccccccc
Confidence 99999999999999999999999999999999888642 33334455566899999999764 789999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000858 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1180 (1251)
Q Consensus 1103 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~e 1180 (1251)
||+++| |+++.|.|+.|+...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999998872
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000858 1181 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1217 (1251)
Q Consensus 1181 k~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~p 1217 (1251)
...++++||.+|.+.|--
T Consensus 411 -------------------Rm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 411 -------------------RMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred -------------------HhhccHHHHHHHHHHHHH
Confidence 135999999999988653
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=344.25 Aligned_cols=248 Identities=42% Similarity=0.695 Sum_probs=226.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 942 ~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
.+.+++|.|+.|+++++++|+|+|.+ |++|+.|.+.+ .+.|+|+||+||||||||.||+|+|.++|+||+.+++++++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34578999999999999999999986 99999999998 56779999999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCC---CCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC
Q 000858 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~---~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1098 (1251)
..+.|.....++.+|..|+..+|+||||||||.+...|. ..+.+......+++++..|||+... ..|+|+|+||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999999999999999999999999999999999988884 3345556678899999999999765 77999999999
Q ss_pred CCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 000858 1099 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1175 (1251)
Q Consensus 1099 p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie 1175 (1251)
++.||++++| ||++.|++++|+...|.+|++.++++.++. +++++..||.+|.||+|+||.++|++|+..+.|+
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~--- 536 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK--- 536 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---
Confidence 9999999999 999999999999999999999999998885 7888999999999999999999999999999886
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000858 1176 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1219 (1251)
Q Consensus 1176 ~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~ 1219 (1251)
....|+..||..|++++....
T Consensus 537 -----------------------~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 537 -----------------------GLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred -----------------------ccCccchhhHHHHHHHHhccc
Confidence 235688899999999776554
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=302.96 Aligned_cols=242 Identities=31% Similarity=0.481 Sum_probs=213.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
..+|+|++|++++|+..+-++. .|..|+.|..+. |++||+|||||||||++|+|+|++++.||+.+.+.+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999998876555 489999999875 58999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcH
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1251)
+|.+...++++|+.|++.+|||+||||+|.+.-.|.-+........++|.|++.|||+.. +..|..||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhcCH
Confidence 999999999999999999999999999999975554333333456789999999999974 478999999999999999
Q ss_pred HHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHH-HHHHHHHhhhhHHHHHHHHHHHHH
Q 000858 1105 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK-NLCVTAAHCPIREILEKEKKERAL 1183 (1251)
Q Consensus 1105 aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~-~L~~~Aa~~airriie~~~~ek~l 1183 (1251)
++++||...|+|.+|+.++|.+|++.+++++.+.-+.+++.++..|.|+||+||. .++..|.++|+.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----------
Confidence 9999999999999999999999999999999999899999999999999999998 56677777777651
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000858 1184 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1219 (1251)
Q Consensus 1184 ~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~ 1219 (1251)
...|+.+||+.|+++-++..
T Consensus 340 ----------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 340 ----------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred ----------------hhhhhHHHHHHHHHhhcccc
Confidence 12477899999998865544
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.2e-33 Score=325.50 Aligned_cols=245 Identities=38% Similarity=0.618 Sum_probs=221.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
.+.++|+||+|++.+++.|++.+.+|+.+++.|.+.++. |++++||+||||||||+||+++|++++.+|+.+.++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 447899999999999999999999999999999998854 6699999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC--chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
.|.|+.+..++.+|..|+...|+||||||||.++..+.+. +......+++.+++..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 22334567788899999887543 5799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~ 1178 (1251)
.||++++| ||++.|+|++|+.++|..||+.++.+..+..++++..++..|+||+|+||.++|++|++.++++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888899999999999999999999999999999988761
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1179 ~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
...++++||..|++++.
T Consensus 371 ---------------------~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 371 ---------------------RYVILPKDFEKGYKTVV 387 (398)
T ss_pred ---------------------CCccCHHHHHHHHHHHH
Confidence 13699999999998864
No 23
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=334.66 Aligned_cols=263 Identities=38% Similarity=0.604 Sum_probs=245.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
..+ ++++|+......+++.+.+|+.++..|...+ .+|++++|+|||||||||++++++|++.++.++.+++++++.++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 6899999999999999999999999999888 45779999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcC-CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCc
Q 000858 1025 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1251)
.|+++++++.+|+.|.+++ |+||||||+|.+++++..... ...++..+++.++++... ..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876443 678899999999999874 37899999999999999
Q ss_pred HHHHh-cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000858 1104 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1182 (1251)
Q Consensus 1104 ~aLlr-RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~ 1182 (1251)
++++| ||++.+.+..|+..+|.+|++.++++++..++.++..+|..|.||+|+||..+|..|+..++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99999 9999999999999999999999999999888899999999999999999999999999888775
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHhcCCCcccc
Q 000858 1183 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 1244 (1251)
Q Consensus 1183 l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~~Rk~ 1244 (1251)
++++|..|+..++||..++.....++++|+||||++.+|++
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 67899999999999999999988899999999999999864
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-33 Score=296.91 Aligned_cols=248 Identities=33% Similarity=0.579 Sum_probs=225.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
.+.+++.|++|..+.++.|++.+..|+.+|+.|.+.++. ||+|||||||||||||.+|+|+|+..++.|+.+-+++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 457899999999999999999999999999999999965 6699999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC--chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
+|+|++...++.+|++|+..+-||||+||||.+.+.|... +......+.+.+++.+++|+.+. +++-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999988764 34445566777899999999755 7899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~ 1178 (1251)
.||++++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||..+..-+|++|+.+|.+|.+.|+|.-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999998851
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1219 (1251)
Q Consensus 1179 ~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~ 1219 (1251)
.+..|-.||.+|+.++...+
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHH
Confidence 02367789999999876443
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.7e-32 Score=318.34 Aligned_cols=250 Identities=41% Similarity=0.697 Sum_probs=222.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000858 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1251)
Q Consensus 944 ~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~ 1023 (1251)
+..+|+||+|++++++.|++.+..|+.+++.|...++. ++++|||+||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 46789999999999999999999999999999988854 55899999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCc--hHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC
Q 000858 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1251)
Q Consensus 1024 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1251)
|.|+.+..++.+|..|+...|+||||||||.++..+.+.. ......+.+.+++..++++... .+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCChhh
Confidence 9999999999999999999999999999999987765322 1233455667788888876543 57999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000858 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1179 (1251)
Q Consensus 1102 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ 1179 (1251)
+|++++| ||+..|.|++|+.++|.+||+.++.+..+..+.++..||..|+||+++||.++|++|++.++++
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~------- 355 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------- 355 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 9999998 9999999999999999999999999888888899999999999999999999999999988775
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000858 1180 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1222 (1251)
Q Consensus 1180 ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e 1222 (1251)
....|+++||.+|+++++++...+
T Consensus 356 -------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 -------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 113589999999999999887665
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=3.3e-31 Score=313.21 Aligned_cols=246 Identities=38% Similarity=0.621 Sum_probs=219.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000858 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1251)
Q Consensus 944 ~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~ 1023 (1251)
+..+|+||+|+++.+++|.+++.+|+.++++|...++. +++++||+||||||||++|++||++++.+|+.+.++++...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 35799999999999999999999999999999988854 66899999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC--chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC
Q 000858 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1251)
Q Consensus 1024 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1251)
|.|..+..++.+|..|....|+||||||||.++..+... +......+.+.+++..++++... .++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 999999999999999999999999999999998776431 22233455667788888887543 57999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000858 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1179 (1251)
Q Consensus 1102 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ 1179 (1251)
||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..++..++||+++||.++|++|++.|+++-
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 9999998 99999999999999999999999999888889999999999999999999999999999988861
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccc
Q 000858 1180 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1218 (1251)
Q Consensus 1180 ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS 1218 (1251)
...|+++||..|++++...
T Consensus 409 --------------------r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 409 --------------------RMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred --------------------CCccCHHHHHHHHHHHHhh
Confidence 1359999999999997543
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=320.32 Aligned_cols=251 Identities=41% Similarity=0.624 Sum_probs=228.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
...++|.|+.|.+++++++.+.|.. ++.|..|...+. +-|+|+||+||||||||+||+|+|.+++.||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4478999999999999999999985 899999998886 66799999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC--CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
.++|-+...+|.+|..|++.+||||||||||.+...|.. .+.+....+.++++++.|||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999877742 34556667899999999999974 47899999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~ 1178 (1251)
.||++++| ||++.|.++.||...|++|++.++++..+..++++..+|+.|.||+++||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccc
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1223 (1251)
Q Consensus 1179 ~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~ 1223 (1251)
....++|.||.+|++++..-..+..
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks 398 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKS 398 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCC
Confidence 2256899999999999866554443
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=6.2e-31 Score=317.93 Aligned_cols=269 Identities=39% Similarity=0.600 Sum_probs=230.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 942 ~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
..+.++|+||+|++++++++++.+.. +.+++.|.+.+ ..+++++||+||||||||++|++||.+++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 34578999999999999999998875 88899888776 45668999999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC--chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC
Q 000858 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1099 (1251)
..+.|..++.++.+|..|+...|+||||||||.++..+... ..+.....++++|+..++++... .+++||+|||++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 99999999999999999999999999999999998766542 22344567889999999987543 579999999999
Q ss_pred CCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000858 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1251)
Q Consensus 1100 ~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~ 1177 (1251)
+.||++++| ||++.+++++|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~----- 278 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK----- 278 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999887777889999999999999999999999998776553
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHhcCCC
Q 000858 1178 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1240 (1251)
Q Consensus 1178 ~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~ 1240 (1251)
..+.++++||+.|++++..........+.+..+|...+.+.|
T Consensus 279 ---------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 ---------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ---------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 124689999999999876554444445566677777666544
No 29
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-32 Score=342.32 Aligned_cols=414 Identities=19% Similarity=0.214 Sum_probs=296.1
Q ss_pred ceeeeccccCCCCcceeeecCCCCcCCCCC-----CCCCCCCC---cccccccccccCCCcchhHHHHHHHHHHHHhhcc
Q 000858 630 GRVILPFEDNDFSKIGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNES 701 (1251)
Q Consensus 630 g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~-----~~ce~~~~---~~~~~~~~~~d~~~~~~~~k~~~~~l~evl~ses 701 (1251)
+++...|-.++. =||.|+.|+..|.+|+ +.|..+.. ||......| .+.|.++..+.+..|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~--lskwvgEaERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC--LSKWVGEAERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh--hccccCcHHHHHHHHHHHHhc--
Confidence 345444445554 5899999999999987 67766555 888888877 679999999999999988776
Q ss_pred CCCCeEEEEcChhhhhc-----cChhhHHHHHHHHhcC------CCCEEEEeeccCCCcccccCCCCCceeeccCcchhh
Q 000858 702 KSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 770 (1251)
Q Consensus 702 ~~~P~Ilf~~die~~l~-----~~~~~~~~l~~~L~~L------~g~VvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~ 770 (1251)
++|.||||++|++ |+ .+.++|++|+++|.+| +|+||||||||
T Consensus 362 -~qPSIIffdeIdG-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn------------------------- 414 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDG-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN------------------------- 414 (1080)
T ss_pred -cCceEEecccccc-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC-------------------------
Confidence 9999999999999 55 6899999999999999 68999999999
Q ss_pred hccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC
Q 000858 771 LLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL 848 (1251)
Q Consensus 771 l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l 848 (1251)
+||++|| |||| ||+++|||+||+..+|..|+.|||+.|.+++
T Consensus 415 -----Rpda~dp-------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i 458 (1080)
T KOG0732|consen 415 -----RPDAIDP-------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI 458 (1080)
T ss_pred -----Cccccch-------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC
Confidence 7888888 9999 9999999999999999999999999999999
Q ss_pred CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCccccccCchhhhHHHHhhhhhhhhhhhhhhhhc--c
Q 000858 849 DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDV--V 925 (1251)
Q Consensus 849 ~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~Id~~sIkv~~~df~~al~eik~~~~slk~i--v 925 (1251)
.-..+..||..|.||+||||++||++|+..++++.++++|. ..++.+++..+++...+|..++..+.+....-..+ .
T Consensus 459 ~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~ 538 (1080)
T KOG0732|consen 459 SRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSR 538 (1080)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCC
Confidence 99999999999999999999999999999999999999998 78899999999999999999887766542210000 0
Q ss_pred chhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHH
Q 000858 926 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAV 1004 (1251)
Q Consensus 926 ~~~e~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pel-f~k~~l~~P~~gVLL~GPPGTGKT~LAkAI 1004 (1251)
+.....+.++ +..........+.-+......+.+...+-++..+. |.-..+.+| .+||.|..|.|.+++..+|
T Consensus 539 Pl~~~~~~ll----~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aI 612 (1080)
T KOG0732|consen 539 PLSTYLKPLL----PFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAI 612 (1080)
T ss_pred CCCcceeccc----chHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHH
Confidence 0000000000 00000000111122222223333222221111111 111223333 5999999999999999999
Q ss_pred HHHh-CCcEEEEecccccccc-cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCC
Q 000858 1005 ATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1251)
Q Consensus 1005 A~el-g~~fi~V~~s~L~s~~-~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl 1082 (1251)
.+.+ +.++..+..+.++... +...+..+..+|.+|++..||||||.++|.|...... .+...|+..++..
T Consensus 613 lh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~ 684 (1080)
T KOG0732|consen 613 LHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEK 684 (1080)
T ss_pred HHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhh
Confidence 9988 7888888888777665 6777889999999999999999999999999643322 2333343333321
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000858 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
... ..+..+-+-+..+ ..-=..+..+..|..+.+..+++..+++
T Consensus 685 ~~~--t~i~e~~t~~~~~------~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 685 ALS--TPILELHTWDTSF------ESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred hhc--cchhhhccccccc------cccCccccccccchhhhhHHHHHHHHHH
Confidence 110 1222222211110 0000124566778888888888777765
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=4.4e-30 Score=323.58 Aligned_cols=288 Identities=38% Similarity=0.636 Sum_probs=247.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
.++|+||+|++.+++.|++.+..|+.++++|...++ .+++++|||||||||||+||++||++++.+|+.++++++.+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 579999999999999999999999999999998885 4668999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcH
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1251)
.|..+..++.+|..|....|+||||||||.+++.+.... .+...+++++|+..++++.. ...++||++||+++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCH
Confidence 999999999999999999999999999999987765432 23446778888888888754 367999999999999999
Q ss_pred HHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000858 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1182 (1251)
Q Consensus 1105 aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~ 1182 (1251)
++++ ||+..+.+++|+.++|.+||+.+.....+..+.+++.++..++||+++||..+|+.|++.++++.+........
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9998 99999999999999999999999888877788899999999999999999999999999999886542210000
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhhhHHHHhcCCCccc
Q 000858 1183 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1243 (1251)
Q Consensus 1183 l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~~Rk 1243 (1251)
... .+ ........++++||..|++.+.|+...+.....+.+.|+||+|++..|+
T Consensus 410 ---~~~--i~--~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 410 ---AEE--IP--AEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred ---ccc--cc--chhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 000 00 0011234689999999999999999888777789999999999998875
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=3.2e-29 Score=292.13 Aligned_cols=243 Identities=44% Similarity=0.721 Sum_probs=213.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000858 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1251)
Q Consensus 944 ~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~ 1023 (1251)
+..+|+||+|++++++.|++++..|+.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.+..+...
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 46789999999999999999999999999999988854 56899999999999999999999999999999999999888
Q ss_pred ccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCc--hHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC
Q 000858 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1251)
Q Consensus 1024 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1251)
++|.....++.+|..++...|+||||||+|.++..+.... ......+.+.+++..++++... .+++||+|||+++.
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRPDI 273 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChhh
Confidence 9999999999999999999999999999999986654321 1223345567777777776432 57999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000858 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1179 (1251)
Q Consensus 1102 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ 1179 (1251)
+++++++ ||++.+.|+.|+.++|.+||+.++.+..+..++++..|+..++||+++||.++|.+|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999998 99999999999999999999999988887778899999999999999999999999999988751
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000858 1180 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1215 (1251)
Q Consensus 1180 ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v 1215 (1251)
...|+.+||..|++++
T Consensus 348 --------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCccCHHHHHHHHHHh
Confidence 1359999999999875
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=8.6e-29 Score=296.35 Aligned_cols=272 Identities=29% Similarity=0.491 Sum_probs=211.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 1012 (1251)
Q Consensus 943 e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~----------f 1012 (1251)
.+.++|+||+|++..+++|++.+.+|+.+++.|...++ .|++++|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 34689999999999999999999999999999998885 456899999999999999999999998544 6
Q ss_pred EEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCc
Q 000858 1013 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1251)
Q Consensus 1013 i~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~ 1088 (1251)
+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||||.++..|...........++++|+..++++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 677778899999999999999999998864 6999999999999988765444455577889999999998653 5
Q ss_pred cEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhc-ccC---------ChhcHHHHHHH-------
Q 000858 1089 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------- 1149 (1251)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~-~l~---------~dvdl~~LA~~------- 1149 (1251)
+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... .+. ...++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998752 221 11112222211
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHH
Q 000858 1150 ----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDD 1207 (1251)
Q Consensus 1150 ----------------------T~GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eD 1207 (1251)
++.+||++|.++|.+|...|+++.++ ...+.++++|
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~~ 470 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIEH 470 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHHH
Confidence 23455666666666665555555331 0124699999
Q ss_pred HHHHHHHh-cccccccccchhhhhhHHHHhcCCCc
Q 000858 1208 FKYAHEQV-CASVSSESTNMNELLQWNELYGEGGS 1241 (1251)
Q Consensus 1208 F~~Al~~v-~pS~s~e~~~~~~~v~W~DigG~~~~ 1241 (1251)
+..|+..- ..+ .+..+..--..|..|.|..|-
T Consensus 471 l~~a~~~e~~~~--~~~~~~~~~~~w~~~~~~~~~ 503 (512)
T TIGR03689 471 LLAAVLDEFRES--EDLPNTTNPDDWARISGKKGE 503 (512)
T ss_pred HHHHHHHhhccc--ccCCCCCCHHHHhhhhCCCCC
Confidence 99998763 322 233333334679999887654
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.1e-28 Score=303.80 Aligned_cols=243 Identities=38% Similarity=0.594 Sum_probs=212.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000858 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1251)
Q Consensus 944 ~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~ 1023 (1251)
...+|+|++|++++++++.+.+.. +..++.|...+. .+++++||+||||||||+||+++|.+++.+|+.++++++...
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 367999999999999999998875 788888887774 456899999999999999999999999999999999999888
Q ss_pred ccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC--CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC
Q 000858 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1251)
Q Consensus 1024 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1251)
+.|.....++.+|..|+...|+||||||||.++..+.. .+.+.....++++|+..++++.. +.+++||++||+++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchHh
Confidence 88888889999999999999999999999999866543 22344556788899999988754 367999999999999
Q ss_pred CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000858 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1179 (1251)
Q Consensus 1102 Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ 1179 (1251)
+|++++| ||++.+.+++|+.++|.+||+.++.+..+..+.++..+|..+.||+++||.++|++|+..+.++.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------ 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------ 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999998 99999999999999999999999999777788999999999999999999999999988776541
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000858 1180 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1180 ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
...++++||+.|+.++.
T Consensus 408 --------------------~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 408 --------------------KATITMKEIDTAIDRVI 424 (638)
T ss_pred --------------------CCCcCHHHHHHHHHHHH
Confidence 23588888888888763
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8e-29 Score=307.93 Aligned_cols=347 Identities=28% Similarity=0.400 Sum_probs=265.3
Q ss_pred hhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCccccccCchhhhHHHHh
Q 000858 830 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 908 (1251)
Q Consensus 830 ~~gR~~Il~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~Id~~sIkv~~~df~ 908 (1251)
...+..+.++|++.|. ..+...+..+.+|.+..+...+..+......+.+..++. ..++..+.........+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 4556667777776543 455667777778888887777777766665555554443 2232222112211111111
Q ss_pred hhhhhhhhhhhhhhhccchhHHHHhhhcCC-CCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceE
Q 000858 909 GIQSESKSLKKSLKDVVTENEFEKKLLADV-IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 987 (1251)
Q Consensus 909 ~al~eik~~~~slk~iv~~~e~ek~ll~~v-Ip~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gV 987 (1251)
.+. ....+..+.|++|||++.++++|++.|..|+.+|+.|...++. ||+||
T Consensus 251 ---------------------------~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgv 302 (1080)
T KOG0732|consen 251 ---------------------------ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGV 302 (1080)
T ss_pred ---------------------------cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcce
Confidence 011 1112346789999999999999999999999999999998865 55999
Q ss_pred EEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCC
Q 000858 988 LLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1251)
Q Consensus 988 LL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~ 1062 (1251)
|++||||||||..|+++|..+ ...|+.-.+++..++|+|+.+..++.+|++|++.+|+|||+||||-|.+.|...
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk 382 (1080)
T KOG0732|consen 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK 382 (1080)
T ss_pred eecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch
Confidence 999999999999999999887 466777788999999999999999999999999999999999999998888654
Q ss_pred chHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcc-cCC
Q 000858 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LAS 1139 (1251)
Q Consensus 1063 ~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~-l~~ 1139 (1251)
.++ ....++.+|+..|+|+... +.|+||+|||+++.+|++++| ||++.++|++|+.+.|.+|+..+..+.. ...
T Consensus 383 qEq-ih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 383 QEQ-IHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred HHH-hhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 333 4567899999999999765 789999999999999999999 9999999999999999999999887754 224
Q ss_pred hhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000858 1140 DVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1219 (1251)
Q Consensus 1140 dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~ 1219 (1251)
...+..||..|.||.|+||+.||..|+..++++-....-. ..... .-......|...||..|+.++.|+.
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~------s~~kl----~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS------SSDKL----LIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec------ccccc----cccchhhhhhhHhhhhhhhccCCCC
Confidence 5568899999999999999999999999998873211000 00000 0011223488999999999998888
Q ss_pred ccc
Q 000858 1220 SSE 1222 (1251)
Q Consensus 1220 s~e 1222 (1251)
.+.
T Consensus 530 ~R~ 532 (1080)
T KOG0732|consen 530 RRS 532 (1080)
T ss_pred Ccc
Confidence 764
No 35
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-29 Score=273.40 Aligned_cols=243 Identities=35% Similarity=0.667 Sum_probs=216.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
..+|++++|.-.+..++++.+..|+.+|++|.+.++ +||.+++||||||+|||.+|+++|..+|++|+.+..+.|.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 568999999999999999999999999999998774 5779999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCc--hHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCC
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1251)
.|++...+++.|..|+.+.|||||+||||...+++.+.. ......+.+-+++.+|+++... .+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecCCcccc
Confidence 999999999999999999999999999999998875532 2334455666777888887654 789999999999999
Q ss_pred cHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000858 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1180 (1251)
Q Consensus 1103 d~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~e 1180 (1251)
+++++| |+++.+.+++|+...|..|++.+.......-.++.+.+.+..+||+++|+++.|++|.+.++++.-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~------ 358 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER------ 358 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh------
Confidence 999999 999999999999999999999998888777888999999999999999999999999988877621
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000858 1181 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1181 k~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
-.+-+|||..++.++.
T Consensus 359 --------------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 --------------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred --------------------HHHhHHHHHHHHHHHH
Confidence 1256788888887654
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1e-27 Score=297.47 Aligned_cols=249 Identities=39% Similarity=0.604 Sum_probs=216.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 943 e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
....+|+++.|.+..++.+.+.+.. +..++.|...+. ..++||||+||||||||++|++++.+++.+|+.++++++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 3456899999999999999998876 556666665543 44578999999999999999999999999999999999998
Q ss_pred cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC--CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1023 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
.+.|.....++.+|..|+..+|+||||||||.++..+.. .+.+.....++++++..++++... ..++||+|||+++
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~ 301 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPD 301 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChh
Confidence 899999999999999999999999999999999877653 233445567889999999988643 6799999999999
Q ss_pred CCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000858 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1251)
Q Consensus 1101 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~ 1178 (1251)
.||++++| ||++.+.+++|+.++|.+||+.++.+..+..++++..+|..|.||+++||.++|++|+..++++
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~------ 375 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 375 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999988888999999999999999999999999999887764
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 000858 1179 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1221 (1251)
Q Consensus 1179 ~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~ 1221 (1251)
....++++||+.|++++.+....
T Consensus 376 --------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 --------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred --------------------CCCcccHHHHHHHHHHHhccccc
Confidence 12358888999988887665443
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=1e-26 Score=298.36 Aligned_cols=185 Identities=20% Similarity=0.297 Sum_probs=154.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc------------------------------------
Q 000858 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------------ 1024 (1251)
Q Consensus 981 ~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~------------------------------------ 1024 (1251)
..|++||||+||||||||+||+|+|.++++||+.++++++...+
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 46789999999999999999999999999999999999987643
Q ss_pred -----cCchHH--HHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcc-cCCccEEEEEec
Q 000858 1025 -----FGEGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLVLAAT 1096 (1251)
Q Consensus 1025 -----~G~se~--~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~-k~~~~VlVIaTT 1096 (1251)
.+..+. .++.+|+.|++.+||||||||||.|..... ....+++|+..|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 111222 388899999999999999999999964421 11236778888887642 234679999999
Q ss_pred CCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHh--hcccCC-hhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 000858 1097 NRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELAS-DVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1097 N~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~--k~~l~~-dvdl~~LA~~T~GySgaDL~~L~~~Aa~~air 1171 (1251)
|+|+.||||++| ||++.|.|+.|+..+|.+++..++. +..+.. .++++.+|..|.||+|+||.+||++|+..+++
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999887643 334443 35799999999999999999999999999988
Q ss_pred H
Q 000858 1172 E 1172 (1251)
Q Consensus 1172 r 1172 (1251)
+
T Consensus 1860 q 1860 (2281)
T CHL00206 1860 Q 1860 (2281)
T ss_pred c
Confidence 7
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-27 Score=270.55 Aligned_cols=264 Identities=27% Similarity=0.437 Sum_probs=218.3
Q ss_pred CCCccc--ccCcHHHHH-HHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecccc
Q 000858 945 GVTFDD--IGALENVKD-TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSI 1020 (1251)
Q Consensus 945 ~~tfdd--I~Gle~vk~-~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-~fi~V~~s~L 1020 (1251)
...|++ |||++.--. ..+++...-+.-|++..+.++ +..+|||||||||||||.+||.|.+-+++ +--.++++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 456766 899986654 456666666677888888885 44589999999999999999999999964 4455899999
Q ss_pred cccccCchHHHHHHHHHHHHhc--------CCceEEEccccccccCCCCCch-HHHHHHHHHhHHhhccCCcccCCccEE
Q 000858 1021 TSKWFGEGEKYVKAVFSLASKI--------APSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1251)
Q Consensus 1021 ~s~~~G~se~~I~~lF~~A~k~--------~PsILfIDEID~L~~~r~~~~~-~e~~~~il~~LL~~ldgl~~k~~~~Vl 1091 (1251)
+++|+|++|.+++.+|..|..- .--||++||||.+|.+|++... ......++++|+..|||...- .+++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 9999999999999999988532 2349999999999998877544 557788999999999998655 6899
Q ss_pred EEEecCCCCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhc----ccCChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000858 1092 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1251)
Q Consensus 1092 VIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~----~l~~dvdl~~LA~~T~GySgaDL~~L~~~A 1165 (1251)
||+-||+.+.+|++++| ||...+++.+||...|.+|++.+.+++ .+..++|+++||..|..|+|++|..|++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999998874 356899999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000858 1166 AHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1222 (1251)
Q Consensus 1166 a~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e 1222 (1251)
...|.-|.+....+ ........+...|+++||.+|+++++|.+...
T Consensus 452 ~S~A~nR~vk~~~~-----------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGK-----------VEVDPVAIENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred HHHHHHhhhccCcc-----------eecCchhhhheeecHHHHHHHHHhcCcccCCC
Confidence 99988886543311 01112233456799999999999999999643
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=1.5e-24 Score=246.92 Aligned_cols=188 Identities=20% Similarity=0.257 Sum_probs=153.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhc-----CCceEEEcccccc
Q 000858 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSM 1055 (1251)
Q Consensus 981 ~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~-----~PsILfIDEID~L 1055 (1251)
.++|.+++||||||||||++|++||+++|++|+.+++++|.++|.|++++.++++|..|... +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46789999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred ccCCCCCchHHHHHHH-HHhHHhhccCCc----------ccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHH
Q 000858 1056 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 1122 (1251)
Q Consensus 1056 ~~~r~~~~~~e~~~~i-l~~LL~~ldgl~----------~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~e 1122 (1251)
++++... ......++ ..+|+..+|+.. .....+|+||+|||+|+.|+++++| ||++.+ .+|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9888642 33333444 478998887631 1235679999999999999999999 999764 589999
Q ss_pred HHHHHHHHHHhhcccCChhcHHHHHHHcCC----CcHHHHHHHHHHHHhhhhHH
Q 000858 1123 NREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAHCPIRE 1172 (1251)
Q Consensus 1123 eR~eIL~~ll~k~~l~~dvdl~~LA~~T~G----ySgaDL~~L~~~Aa~~airr 1172 (1251)
+|.+|++.++++..+. ..++..|+..+.| |.|+--..+..++...-+.+
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999998765 5788888888876 44544444555554444443
No 40
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-22 Score=243.59 Aligned_cols=249 Identities=22% Similarity=0.325 Sum_probs=200.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCch
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1064 (1251)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|++..|+||||-++|.+...... +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998644433 33
Q ss_pred HHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHH
Q 000858 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 1144 (1251)
Q Consensus 1065 ~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~ 1144 (1251)
.......++.++. .+.. .....+++||++|+..+.+++.+++.|.+.|.++.|+.++|.+||+.++....+..++.++
T Consensus 511 d~rl~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 3333444444443 2222 2234789999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccc
Q 000858 1145 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA-LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1223 (1251)
Q Consensus 1145 ~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~-l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~ 1223 (1251)
.++..|.||+.+||..++..+-..+..++.++. .... ....++. .......++++||.+|+.+++..++..+
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~-l~g~~~~~~~~~------~~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG-LAGGLQEEDEGE------LCAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc-ccccchhccccc------cccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999998887433333332221 0000 0001111 1112367999999999999999999887
Q ss_pred cchh-hhhhHHHHhcCCCccc
Q 000858 1224 TNMN-ELLQWNELYGEGGSRK 1243 (1251)
Q Consensus 1224 ~~~~-~~v~W~DigG~~~~Rk 1243 (1251)
.+.+ |+|.|+||||++.+|+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCCccchhcccCHHHHHH
Confidence 7766 9999999999999884
No 41
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.8e-23 Score=230.69 Aligned_cols=232 Identities=23% Similarity=0.297 Sum_probs=183.1
Q ss_pred ccccccccccccchhHHHHHHHHhhhhhccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000858 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1251)
Q Consensus 448 ~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lD 526 (1251)
.-+|||+..--. |....=|.++.-..|+|++. |-. .+.| -..+||.|||| ....+||||.||+-+|.++=+=
T Consensus 145 ~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PEl--F~~~GI~P-PKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 145 KPDVTYEDIGGL--DEQIQEIREVVELPLKNPEL--FEELGIDP-PKGVLLYGPPG--TGKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred CCCCChhhccCH--HHHHHHHHHHhcccccCHHH--HHHcCCCC-CCceEeeCCCC--CcHHHHHHHHHhccCceEEEec
Confidence 456788877776 77777889999999999998 433 3333 46799999999 7999999999999999987553
Q ss_pred ccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCee-
Q 000858 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV- 605 (1251)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv- 605 (1251)
.+ .-|
T Consensus 218 gS--------------------------------------------------------------------------ElVq 223 (406)
T COG1222 218 GS--------------------------------------------------------------------------ELVQ 223 (406)
T ss_pred cH--------------------------------------------------------------------------HHHH
Confidence 21 013
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcchh
Q 000858 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1251)
Q Consensus 606 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 685 (1251)
||+|..
T Consensus 224 KYiGEG-------------------------------------------------------------------------- 229 (406)
T COG1222 224 KYIGEG-------------------------------------------------------------------------- 229 (406)
T ss_pred HHhccc--------------------------------------------------------------------------
Confidence 677641
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCcccc
Q 000858 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKE 752 (1251)
Q Consensus 686 ~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~--------~~~~~~~~l~~~L~~L-----~g~VvvIgs~~~~d~~k~ 752 (1251)
-+++.+||+++.+ +.|.|||||+||.+=+ +..|.-..+...|..| +|+|-||.|||
T Consensus 230 -aRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN------- 298 (406)
T COG1222 230 -ARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN------- 298 (406)
T ss_pred -hHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC-------
Confidence 2458999999988 9999999999999433 2344444444445555 45999999999
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhh
Q 000858 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1251)
Q Consensus 753 k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 830 (1251)
+||-+|| |||| ||+|.++|+|||+
T Consensus 299 -----------------------R~D~LDP-------------------------------ALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 299 -----------------------RPDILDP-------------------------------ALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred -----------------------CccccCh-------------------------------hhcCCCcccceeecCCCCH
Confidence 5666776 9999 9999999999999
Q ss_pred hcccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhh
Q 000858 831 KGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1251)
Q Consensus 831 ~gR~~Il~IhT~-l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~ 909 (1251)
.||.+||+|||+ |. --++++++.||..|.|++||||+++|++|--+|+.... ..+...||+.
T Consensus 325 ~gR~~Il~IHtrkM~--l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---------------~~Vt~~DF~~ 387 (406)
T COG1222 325 EGRAEILKIHTRKMN--LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---------------DEVTMEDFLK 387 (406)
T ss_pred HHHHHHHHHHhhhcc--CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------CeecHHHHHH
Confidence 999999999997 53 22789999999999999999999999999999997432 2456889988
Q ss_pred hhhhhhh
Q 000858 910 IQSESKS 916 (1251)
Q Consensus 910 al~eik~ 916 (1251)
|..++..
T Consensus 388 Av~KV~~ 394 (406)
T COG1222 388 AVEKVVK 394 (406)
T ss_pred HHHHHHh
Confidence 8766543
No 42
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1e-22 Score=229.41 Aligned_cols=250 Identities=18% Similarity=0.240 Sum_probs=197.1
Q ss_pred CccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000858 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1251)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lD 526 (1251)
++.+|.||..--. ++.|.+|-+|+...+..++|. ..|-..++.|||.|||| ....|||||+|.+.|..+.-+-
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F---~GirrPWkgvLm~GPPG--TGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFF---KGIRRPWKGVLMVGPPG--TGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHH---hhcccccceeeeeCCCC--CcHHHHHHHHHHhhcCeEEEec
Confidence 4667999987776 899999999999999988764 47778999999999999 6899999999999998887776
Q ss_pred ccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCeee
Q 000858 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1251)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 606 (1251)
|+.|...|..|+
T Consensus 278 sstltSKwRGeS-------------------------------------------------------------------- 289 (491)
T KOG0738|consen 278 SSTLTSKWRGES-------------------------------------------------------------------- 289 (491)
T ss_pred hhhhhhhhccch--------------------------------------------------------------------
Confidence 655444333222
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 000858 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1251)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~ 686 (1251)
T Consensus 290 -------------------------------------------------------------------------------- 289 (491)
T KOG0738|consen 290 -------------------------------------------------------------------------------- 289 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--c-------ChhhHHHHHHHHhcCCC---C---EEEEeeccCCCccc
Q 000858 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLT--G-------NNDAYGALKSKLENLPS---N---VVVIGSHTQLDSRK 751 (1251)
Q Consensus 687 k~~~~~l~evl~ses~~~P~Ilf~~die~~l~--~-------~~~~~~~l~~~L~~L~g---~---VvvIgs~~~~d~~k 751 (1251)
.-++..||+++.- ..|.+||||+||.+-. | +.++.+-|.-.++.+.+ + |.|+.|||
T Consensus 290 EKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN------ 360 (491)
T KOG0738|consen 290 EKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN------ 360 (491)
T ss_pred HHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC------
Confidence 2346777887766 9999999999999433 1 23333333333444422 5 99999999
Q ss_pred ccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhh
Q 000858 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1251)
Q Consensus 752 ~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~ 831 (1251)
+|+++|+ ||||||+..+|++||+.+
T Consensus 361 ------------------------~PWdiDE-------------------------------AlrRRlEKRIyIPLP~~~ 385 (491)
T KOG0738|consen 361 ------------------------FPWDIDE-------------------------------ALRRRLEKRIYIPLPDAE 385 (491)
T ss_pred ------------------------CCcchHH-------------------------------HHHHHHhhheeeeCCCHH
Confidence 8999886 999999999999999999
Q ss_pred cccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchh--hhHHHHh
Q 000858 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNILQ 908 (1251)
Q Consensus 832 gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIk--v~~~df~ 908 (1251)
+|..+++|- |+.-.+ ++++++.|+..+.||+|+||..+|+.|..+++.|+..-.....-..+..+.++ +...||+
T Consensus 386 ~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe 463 (491)
T KOG0738|consen 386 ARSALIKIL--LRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFE 463 (491)
T ss_pred HHHHHHHHh--hccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHH
Confidence 999999996 676665 88899999999999999999999999999999988654433333444445555 7788898
Q ss_pred hhhhhhhhh
Q 000858 909 GIQSESKSL 917 (1251)
Q Consensus 909 ~al~eik~~ 917 (1251)
.|+..+.+.
T Consensus 464 ~Al~~v~pS 472 (491)
T KOG0738|consen 464 EALRKVRPS 472 (491)
T ss_pred HHHHHcCcC
Confidence 888777654
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-21 Score=232.61 Aligned_cols=260 Identities=21% Similarity=0.285 Sum_probs=207.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWF 1025 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~s~L~s~~~ 1025 (1251)
|++-...++++..+....| +.+ ..+|||+||+|+|||.|+++++.++ .+++..++|+.+.+..+
T Consensus 409 d~i~~~s~kke~~n~~~sp-----------v~~-~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSP-----------VFR-HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhccc-----------ccc-cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 5555666666655533322 122 2479999999999999999999998 46778899999998888
Q ss_pred CchHHHHHHHHHHHHhcCCceEEEccccccccCCCC-CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcH
Q 000858 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1251)
Q Consensus 1026 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~-~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1251)
....+.+..+|..|.+++|+||++|++|.|++...+ .++.......+..|+.++-....+.+..+.|||+.+....+++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 888889999999999999999999999999984333 2333344455566665555455556677899999999999999
Q ss_pred HHHh--cccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000858 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1181 (1251)
Q Consensus 1105 aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek 1181 (1251)
.+.+ +|+.++.++.|+..+|.+||+.++++.... ...|++-++..|+||...||..++.+|.+.++.+.+..
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~----- 631 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN----- 631 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-----
Confidence 9888 899999999999999999999999886522 33455569999999999999999999999888542211
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhh-hhHHHHhcCCCccc
Q 000858 1182 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 1243 (1251)
Q Consensus 1182 ~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~-v~W~DigG~~~~Rk 1243 (1251)
..+.||.+||.++++.+.|...+++....+. ..|.||||+.+.|+
T Consensus 632 -----------------~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 632 -----------------GPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred -----------------CcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 1125999999999999999999998887755 99999999988875
No 44
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.85 E-value=2.9e-19 Score=225.59 Aligned_cols=380 Identities=20% Similarity=0.247 Sum_probs=214.9
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeec
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTK 763 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilf~~die~~l~------~~~~~~~~l~~~L~~L~g~VvvIgs~~~~d~~k~k~~~~~~~~~~ 763 (1251)
+..+++-+.. ..|.||||||++.++. ++.+..+.|+..|+ +|.+.|||+||..++
T Consensus 263 l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~-------------- 323 (731)
T TIGR02639 263 LKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEY-------------- 323 (731)
T ss_pred HHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHH--------------
Confidence 5555554433 6799999999999764 23567888998887 799999999994222
Q ss_pred cCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHh
Q 000858 764 FGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVL 843 (1251)
Q Consensus 764 ~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IhT~l 843 (1251)
+...+.+.+|.++|. +|.|.+|+.+.++..+...... .. ..|
T Consensus 324 ------------------------~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~-~e---------~~~--- 365 (731)
T TIGR02639 324 ------------------------KNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK-YE---------EFH--- 365 (731)
T ss_pred ------------------------HHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH-HH---------hcc---
Confidence 011223456777773 6777777776665533321111 00 000
Q ss_pred hhCCCCcccchhhhcccCCCCHH------HHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhhhhhhh
Q 000858 844 SRNGLDCVDLESLCIKDQTLTTE------GVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSL 917 (1251)
Q Consensus 844 ~~~~l~~~dLe~La~~tkg~sga------dI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~eik~~ 917 (1251)
.-.+.+..+..++.....|-+. .|. |+.+|....-.+... ..+ ..+...++..........
T Consensus 366 -~v~i~~~al~~~~~ls~ryi~~r~~P~kai~-lld~a~a~~~~~~~~----~~~-------~~v~~~~i~~~i~~~tgi 432 (731)
T TIGR02639 366 -HVKYSDEALEAAVELSARYINDRFLPDKAID-VIDEAGASFRLRPKA----KKK-------ANVSVKDIENVVAKMAHI 432 (731)
T ss_pred -CcccCHHHHHHHHHhhhcccccccCCHHHHH-HHHHhhhhhhcCccc----ccc-------cccCHHHHHHHHHHHhCC
Confidence 0123444444555444443322 222 333333222111000 011 123333433332222111
Q ss_pred h--h-hhhhccchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEc
Q 000858 918 K--K-SLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFG 991 (1251)
Q Consensus 918 ~--~-slk~iv~~~e~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l---~~P~~gVLL~G 991 (1251)
. . ...+......+...+ -..|+|++.+++.+.+.+... +.++ .+|...+||+|
T Consensus 433 P~~~~~~~~~~~l~~l~~~l-------------~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~G 491 (731)
T TIGR02639 433 PVKTVSVDDREKLKNLEKNL-------------KAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTG 491 (731)
T ss_pred ChhhhhhHHHHHHHHHHHHH-------------hcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEEC
Confidence 1 0 000000001111111 125789999999998877631 2222 23444589999
Q ss_pred CCCChHHHHHHHHHHHhCCcEEEEeccccccc-----ccCchHH-----HHHHHHHHHHhcCCceEEEccccccccCCCC
Q 000858 992 PPGTGKTMLAKAVATEAGANFINISMSSITSK-----WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1251)
Q Consensus 992 PPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~-----~~G~se~-----~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1061 (1251)
|+|||||+||++||..++.+++.++++++... .+|.... ....+....+..+.+||||||||.+ .
T Consensus 492 p~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----~ 566 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----H 566 (731)
T ss_pred CCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----C
Confidence 99999999999999999999999999875431 2222111 1122344445566789999999987 2
Q ss_pred CchHHHHHHHHHhHHhhccCCcc-------cCCccEEEEEecCCC-------------------------CCCcHHHHhc
Q 000858 1062 PGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLVLAATNRP-------------------------FDLDEAVVRR 1109 (1251)
Q Consensus 1062 ~~~~e~~~~il~~LL~~ldgl~~-------k~~~~VlVIaTTN~p-------------------------~~Ld~aLlrR 1109 (1251)
+ .+.+.|+..++...- -+-.+++||+|||.. ..+.|.|+.|
T Consensus 567 ~-------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~R 639 (731)
T TIGR02639 567 P-------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNR 639 (731)
T ss_pred H-------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhc
Confidence 2 233444444443211 122468899999752 1256788889
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhhcc---------cC-ChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 000858 1110 LPRRLMVNLPDAPNREKIIRVILAKEE---------LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1172 (1251)
Q Consensus 1110 F~~~I~l~lPd~eeR~eIL~~ll~k~~---------l~-~dvdl~~LA~~T--~GySgaDL~~L~~~Aa~~airr 1172 (1251)
|+.++.|.+.+.++..+|++..+.+.. +. ++..++.|+... ..|..+.|+.+++.-...++.+
T Consensus 640 id~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 640 LDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 999999999999999999999886421 11 333455666642 3455566766666655554443
No 45
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.1e-20 Score=211.35 Aligned_cols=233 Identities=20% Similarity=0.308 Sum_probs=190.3
Q ss_pred HHHHHHhccccCCCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHH
Q 000858 434 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 513 (1251)
Q Consensus 434 ~~~~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKA 513 (1251)
-|+.-+.-.+|.+++|.|+|++.--. |.+|+.|-+..-..|+++++.++ ..|...+..|||.|||| ....|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~-g~Ll~p~kGiLL~GPpG--~GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAK-GKLLRPPKGILLYGPPG--TGKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhcc-cccccCCccceecCCCC--chHHHHHHH
Confidence 36667788999999999999998888 99999999999999999999764 46777999999999999 799999999
Q ss_pred HHhhcCCeEEEEeccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccc
Q 000858 514 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 593 (1251)
Q Consensus 514 LA~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1251)
+|+.-||.+.-|+.+.+-+.|-.
T Consensus 147 ~Akeaga~fInv~~s~lt~KWfg--------------------------------------------------------- 169 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLTSKWFG--------------------------------------------------------- 169 (386)
T ss_pred HHHHcCCCcceeeccccchhhHH---------------------------------------------------------
Confidence 99999999888876555443221
Q ss_pred cCcccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccc
Q 000858 594 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 673 (1251)
Q Consensus 594 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~ 673 (1251)
T Consensus 170 -------------------------------------------------------------------------------- 169 (386)
T KOG0737|consen 170 -------------------------------------------------------------------------------- 169 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----Chhh----HHHHHHHHhcCC----CCEEEE
Q 000858 674 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDA----YGALKSKLENLP----SNVVVI 741 (1251)
Q Consensus 674 ~~~~d~~~~~~~~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~----~~~~----~~~l~~~L~~L~----g~VvvI 741 (1251)
+..-++.++|-+.. |.+|.|||||+||.+|.. .-|. -+-|...++.|. ..|+|+
T Consensus 170 -----------E~eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 170 -----------EAQKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred -----------HHHHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 12223555665555 499999999999998862 1233 334556677773 269999
Q ss_pred eeccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHH
Q 000858 742 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 821 (1251)
Q Consensus 742 gs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRfer 821 (1251)
|||| +|-++| +|.+||+.+
T Consensus 236 gATN------------------------------RP~DlD-------------------------------eAiiRR~p~ 254 (386)
T KOG0737|consen 236 GATN------------------------------RPFDLD-------------------------------EAIIRRLPR 254 (386)
T ss_pred eCCC------------------------------CCccHH-------------------------------HHHHHhCcc
Confidence 9999 555555 499999999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccC
Q 000858 822 QLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 885 (1251)
Q Consensus 822 q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~ 885 (1251)
.|.+++|+...|..||++- +..-.+ +++|+.++|.+|+||+|.||..+|+.|+...++....
T Consensus 255 rf~V~lP~~~qR~kILkvi--Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 255 RFHVGLPDAEQRRKILKVI--LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred eeeeCCCchhhHHHHHHHH--hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999999985 666666 8899999999999999999999999999988876544
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=7.1e-19 Score=199.36 Aligned_cols=237 Identities=16% Similarity=0.243 Sum_probs=170.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 1020 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P--~~gVLL~GPPGTGKT~LAkAIA~el-------g~~fi~V~~s~L 1020 (1251)
+++|++++|++|++++.+ +..++.+.+.++..+ ..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999998876 334455555555443 3459999999999999999999876 236899999999
Q ss_pred cccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-
Q 000858 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1099 (1251)
Q Consensus 1021 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p- 1099 (1251)
.+.++|..+..+..+|..|. ++||||||++.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99999988877888888764 489999999998643321 123345666666666542 2557888887542
Q ss_pred ----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHH----c--CCCc-HHHHHHHHHHHHh
Q 000858 1100 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKNLCVTAAH 1167 (1251)
Q Consensus 1100 ----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~----T--~GyS-gaDL~~L~~~Aa~ 1167 (1251)
..++|++.+||+.+|.|+.++.+++.+|++.++.+.... .+.....+... . ..|. +++++++++.|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333332 1 3344 8999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 000858 1168 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1211 (1251)
Q Consensus 1168 ~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~A 1211 (1251)
+...|++.... ...+.+++..++.+||...
T Consensus 253 ~~~~r~~~~~~--------------~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 253 RQANRIFESGG--------------RVLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHcCCC--------------CCCCHHHHhCCCHHHHhHH
Confidence 87777654311 0122345677888888643
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.81 E-value=6.8e-18 Score=211.92 Aligned_cols=202 Identities=16% Similarity=0.242 Sum_probs=132.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc----
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS---- 1022 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l---~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s---- 1022 (1251)
.|+|++++++.|.+.+.... .++ .+|...+||+||||||||++|+++|..++.+|+.++|+++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 47999999999999886421 122 345557999999999999999999999999999999987532
Q ss_pred -cccCchHHHH----HHHH-HHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcc-------cCCcc
Q 000858 1023 -KWFGEGEKYV----KAVF-SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKER 1089 (1251)
Q Consensus 1023 -~~~G~se~~I----~~lF-~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~-------k~~~~ 1089 (1251)
.++|....++ ...+ ...++.+.+||||||||.+- ..+.+.|+..++...- .+-.+
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------HHHHHHHHHHHhcCeeecCCCceecCCC
Confidence 2333221111 1233 33345566999999999871 2344555555542211 11257
Q ss_pred EEEEEecCCC-------------------------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc-------cc
Q 000858 1090 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL 1137 (1251)
Q Consensus 1090 VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~-------~l 1137 (1251)
++||+|||.- ..+.|+|+.|++.++.|.+.+.++..+|+..++.+. ++
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i 678 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV 678 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 8899999831 135688999999999999999999999998877642 11
Q ss_pred C---ChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhhH
Q 000858 1138 A---SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1138 ~---~dvdl~~LA~~T--~GySgaDL~~L~~~Aa~~air 1171 (1251)
. ++..++.|+... ..|..+.|+.+++.-...++.
T Consensus 679 ~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 679 SLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred CceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 1 223344455432 133445555555555444443
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=2e-18 Score=195.42 Aligned_cols=237 Identities=16% Similarity=0.221 Sum_probs=171.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 1020 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~--P~~gVLL~GPPGTGKT~LAkAIA~elg-------~~fi~V~~s~L 1020 (1251)
+++|++++|++|.+++.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998876 44555555555433 445799999999999999999988762 37999999999
Q ss_pred cccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-
Q 000858 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1099 (1251)
Q Consensus 1021 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p- 1099 (1251)
.+.++|..+..++.+|..|.. +||||||++.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 888999888888888887754 89999999998643321 122334556666666532 2567888887542
Q ss_pred -C---CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc------CC-CcHHHHHHHHHHHHh
Q 000858 1100 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------DG-YSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1100 -~---~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T------~G-ySgaDL~~L~~~Aa~ 1167 (1251)
+ .+++++.+||...|.|+.++.+++..|++.++.+.... ++..+..++... +. -++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999885432 233344444431 11 257999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 000858 1168 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1211 (1251)
Q Consensus 1168 ~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~A 1211 (1251)
+...|+..... ...+..++..++.+|+..+
T Consensus 252 ~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 77777543211 0112345667888888654
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=2.7e-18 Score=191.88 Aligned_cols=217 Identities=15% Similarity=0.221 Sum_probs=156.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISM 1017 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P--~~gVLL~GPPGTGKT~LAkAIA~el-------g~~fi~V~~ 1017 (1251)
.+++++|++++|++|++++.++....... +.++..+ ..++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 35689999999999999887754432222 2333222 3569999999999999999999875 347889999
Q ss_pred ccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecC
Q 000858 1018 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1251)
Q Consensus 1018 s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN 1097 (1251)
+++.+.++|+....++.+|..|. ++||||||+|.|.... ........++.++..++.. ..++++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN----RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc----CCCEEEEecCC
Confidence 99999999999988999998775 4899999999985211 1112234566676666553 24566666654
Q ss_pred CC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc-------C--CCcHHHHHHHH
Q 000858 1098 RP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------D--GYSGSDLKNLC 1162 (1251)
Q Consensus 1098 ~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T-------~--GySgaDL~~L~ 1162 (1251)
.. ..+++++++||+..+.|+.++.+++.+|++.++...... ++..+..|+... . .-+++.+++++
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 247789999999889999999999999999999875432 333344443321 1 23578888999
Q ss_pred HHHHhhhhHHHHH
Q 000858 1163 VTAAHCPIREILE 1175 (1251)
Q Consensus 1163 ~~Aa~~airriie 1175 (1251)
+.|..+...+++.
T Consensus 232 e~a~~~~~~r~~~ 244 (261)
T TIGR02881 232 EKAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHHhc
Confidence 8888777666543
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.8e-19 Score=194.18 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=157.5
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------
Q 000858 936 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------- 1008 (1251)
Q Consensus 936 ~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el------- 1008 (1251)
.+.+|..+..--|+.++--..+|+.|..++...+...+.-....+..-.+-|||+||||||||+|++|+|+.+
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 4566666656678888888899999999887655544433223333333459999999999999999999998
Q ss_pred --CCcEEEEecccccccccCchHHHHHHHHHHHHhcC---C--ceEEEccccccccCCCC---CchHHHHHHHHHhHHhh
Q 000858 1009 --GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA---P--SVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 1078 (1251)
Q Consensus 1009 --g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~---P--sILfIDEID~L~~~r~~---~~~~e~~~~il~~LL~~ 1078 (1251)
...++++++..|+++||+++.+.+..+|......- . -.++|||++.|...|.+ ..+....-++++.++.+
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 34679999999999999999999999998775432 2 35679999999876632 12333345789999999
Q ss_pred ccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000858 1079 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1079 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
+|.+... .+|++++|+|-.+.+|.++..|-+.+.++.+|+.+.|.+|++..+.+
T Consensus 289 lDrlK~~--~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 289 LDRLKRY--PNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHhccC--CCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 9998654 78999999999999999999999999999999999999999998876
No 51
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.6e-18 Score=192.27 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=163.7
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccC
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1026 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G 1026 (1251)
.|++++-.......|+++... ..+ .+. -.-|.++||+|||||||||++|+.||...|..+-.+.+.++.. .-.
T Consensus 353 pl~~ViL~psLe~Rie~lA~a-TaN----TK~-h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~ 425 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIA-TAN----TKK-HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGA 425 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHH-hcc----ccc-ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cch
Confidence 477777777787777775542 111 111 1335678999999999999999999999999998888777543 122
Q ss_pred chHHHHHHHHHHHHhcCCc-eEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHH
Q 000858 1027 EGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1105 (1251)
Q Consensus 1027 ~se~~I~~lF~~A~k~~Ps-ILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1105 (1251)
..-..|.++|+.|++...+ +|||||.|.++..|......+..+..+|.|+..--. ....++++.+||+|.+||-+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHH
Confidence 3456799999999987765 788999999999888878888899999999865322 22568888999999999999
Q ss_pred HHhcccccccCCCCCHHHHHHHHHHHHhhcccC---------------------------ChhcHHHHHHHcCCCcHHHH
Q 000858 1106 VVRRLPRRLMVNLPDAPNREKIIRVILAKEELA---------------------------SDVDLEGIANMADGYSGSDL 1158 (1251)
Q Consensus 1106 LlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~---------------------------~dvdl~~LA~~T~GySgaDL 1158 (1251)
+-.||+.+++|++|..++|.+|+..|+.+.-+. .+..+.+.|..|+||+|++|
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 999999999999999999999999998763211 11226778999999999999
Q ss_pred HHHHHHH
Q 000858 1159 KNLCVTA 1165 (1251)
Q Consensus 1159 ~~L~~~A 1165 (1251)
..|+.-.
T Consensus 582 akLva~v 588 (630)
T KOG0742|consen 582 AKLVASV 588 (630)
T ss_pred HHHHHHH
Confidence 9887543
No 52
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=1.3e-16 Score=203.58 Aligned_cols=201 Identities=22% Similarity=0.271 Sum_probs=129.8
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000858 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1251)
Q Consensus 949 ddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~---~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s 1022 (1251)
..++|++.+...+.+.+... +.++. +|...+||+||+|+|||++|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 35889999999998887641 12222 333348999999999999999999998 45789999876532
Q ss_pred c------------ccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCccc-----
Q 000858 1023 K------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK----- 1085 (1251)
Q Consensus 1023 ~------------~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k----- 1085 (1251)
. |+|..+. ..+....++.+.+||+|||||.. ++ .+.+.|+..++...-.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~~-------~v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----HP-------DVLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----CH-------HHHHHHHHHhhcceeecCCCc
Confidence 1 3332221 11334445667799999999976 22 2333344444322111
Q ss_pred --CCccEEEEEecCCCC-----------------------------CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000858 1086 --DKERVLVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1086 --~~~~VlVIaTTN~p~-----------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
+-.+.+||+|||... .+.|+|+.|++ +|.|.+.+.++..+|+...+..
T Consensus 704 ~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 704 EIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred EEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 125689999988411 14567788886 8899999999999999887754
Q ss_pred c--------cc---CChhcHHHHHHHcCC--CcHHHHHHHHHHHHhhhhHH
Q 000858 1135 E--------EL---ASDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 1172 (1251)
Q Consensus 1135 ~--------~l---~~dvdl~~LA~~T~G--ySgaDL~~L~~~Aa~~airr 1172 (1251)
. ++ .++..++.|+....+ |-.+.|.++++.-...++.+
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 2 11 133345666666532 45677777776665555554
No 53
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=3.1e-18 Score=168.96 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=114.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcC-CceEEEccccccccCCCCCchH
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 1065 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~ 1065 (1251)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+..++.+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999888 9999999999998776 33345
Q ss_pred HHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHH-hcccccccCCC
Q 000858 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 1118 (1251)
Q Consensus 1066 e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl-rRF~~~I~l~l 1118 (1251)
.....+++.++..++..... ..+++||+|||.++.+++.++ +||+.++++++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667788888888876543 367999999999999999999 99998888763
No 54
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.6e-19 Score=193.03 Aligned_cols=223 Identities=20% Similarity=0.290 Sum_probs=175.2
Q ss_pred HHHHHhccccCCCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 000858 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1251)
Q Consensus 435 ~~~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 514 (1251)
++..|.-.|| -|+-+|-|+.---. |..|.+|-+|+-..+|.+.+.. .=....+.|||.|||| ...-.||||+
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFt---GkR~PwrgiLLyGPPG--TGKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFT---GKRKPWRGILLYGPPG--TGKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhc---CCCCcceeEEEeCCCC--CcHHHHHHHH
Confidence 4445555555 36778999988888 9999999999999999887733 2234578999999999 6889999999
Q ss_pred HhhcCCeEEEEeccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCccccccc
Q 000858 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1251)
Q Consensus 515 A~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (1251)
|.+-+..+.-+.|++|-..
T Consensus 187 ATEAnSTFFSvSSSDLvSK------------------------------------------------------------- 205 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDLVSK------------------------------------------------------------- 205 (439)
T ss_pred HhhcCCceEEeehHHHHHH-------------------------------------------------------------
Confidence 9987766666655544332
Q ss_pred CcccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCccccccc
Q 000858 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1251)
Q Consensus 595 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~ 674 (1251)
T Consensus 206 -------------------------------------------------------------------------------- 205 (439)
T KOG0739|consen 206 -------------------------------------------------------------------------------- 205 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh-cC------CCCEEEEe
Q 000858 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE-NL------PSNVVVIG 742 (1251)
Q Consensus 675 ~~~d~~~~~~~~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~-----~~~~~~~l~~~L~-~L------~g~VvvIg 742 (1251)
|-.....++..|||++.+ +.|.|||||+||. +|+ -.+....|+..|. ++ ...|+|+|
T Consensus 206 -------WmGESEkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 206 -------WMGESEKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred -------HhccHHHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 222234458889999988 9999999999995 883 2344444554443 22 34899999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHH
Q 000858 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1251)
Q Consensus 743 s~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 822 (1251)
||| .|+.+|. |+||||++.
T Consensus 275 ATN------------------------------iPw~LDs-------------------------------AIRRRFekR 293 (439)
T KOG0739|consen 275 ATN------------------------------IPWVLDS-------------------------------AIRRRFEKR 293 (439)
T ss_pred cCC------------------------------CchhHHH-------------------------------HHHHHhhcc
Confidence 999 6776665 999999999
Q ss_pred HhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhh
Q 000858 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSH 878 (1251)
Q Consensus 823 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~ 878 (1251)
+||+||+..+|..+++||--..-+.|...|+.+|+.+|.||+|+||.-+|+.|.--
T Consensus 294 IYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalme 349 (439)
T KOG0739|consen 294 IYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALME 349 (439)
T ss_pred eeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhh
Confidence 99999999999999999965666778999999999999999999999988876543
No 55
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.6e-18 Score=196.71 Aligned_cols=220 Identities=24% Similarity=0.383 Sum_probs=171.0
Q ss_pred HhccccCCCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 000858 439 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1251)
Q Consensus 439 l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f 518 (1251)
|...|.+-+.++|+|+.-=-- |..|.=|-+-+- .||.+. ||++-=--.-+.|||.|||| ....+||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhccc
Confidence 557788888899999986666 999999999876 677754 46654466678999999999 68999999999999
Q ss_pred CCeEEEEeccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCccc
Q 000858 519 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 598 (1251)
Q Consensus 519 ~a~LL~lDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1251)
++++.--- | +|+
T Consensus 362 ~VPFF~~s-----G-----SEF---------------------------------------------------------- 373 (752)
T KOG0734|consen 362 GVPFFYAS-----G-----SEF---------------------------------------------------------- 373 (752)
T ss_pred CCCeEecc-----c-----cch----------------------------------------------------------
Confidence 98864211 1 100
Q ss_pred ccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCccccccccccc
Q 000858 599 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 678 (1251)
Q Consensus 599 ~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d 678 (1251)
|- .|||- ...|
T Consensus 374 ----dE-m~VGv--------------------------------------------------------------GArR-- 384 (752)
T KOG0734|consen 374 ----DE-MFVGV--------------------------------------------------------------GARR-- 384 (752)
T ss_pred ----hh-hhhcc--------------------------------------------------------------cHHH--
Confidence 00 12331 1122
Q ss_pred CCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc---ChhhHHHHHHHHhcC----C-----CCEEEEeeccC
Q 000858 679 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG---NNDAYGALKSKLENL----P-----SNVVVIGSHTQ 746 (1251)
Q Consensus 679 ~~~~~~~~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~---~~~~~~~l~~~L~~L----~-----g~VvvIgs~~~ 746 (1251)
+..||.-+.. +.|+|||||++|. +++ +.+.+ +-+.+|.+| . .+||||||||
T Consensus 385 -----------VRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATN- 447 (752)
T KOG0734|consen 385 -----------VRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATN- 447 (752)
T ss_pred -----------HHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccC-
Confidence 6777777666 9999999999999 652 22222 334444444 2 3999999999
Q ss_pred CCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHh
Q 000858 747 LDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLE 824 (1251)
Q Consensus 747 ~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e 824 (1251)
|||++|+ ||.| |||+|+-
T Consensus 448 -----------------------------fpe~LD~-------------------------------AL~RPGRFD~~v~ 467 (752)
T KOG0734|consen 448 -----------------------------FPEALDK-------------------------------ALTRPGRFDRHVT 467 (752)
T ss_pred -----------------------------ChhhhhH-------------------------------HhcCCCccceeEe
Confidence 8888887 9999 9999999
Q ss_pred hhhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000858 825 RDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1251)
Q Consensus 825 ~~Lpd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~ 881 (1251)
.++||+.||.+||+.| |..-.+ .++|+.-||.-|.||+||||+.+|+.|+.+|-+
T Consensus 468 Vp~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 468 VPLPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred cCCCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 9999999999999999 555555 689999999999999999999999999999875
No 56
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.73 E-value=1.5e-15 Score=194.38 Aligned_cols=204 Identities=20% Similarity=0.243 Sum_probs=131.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000858 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1251)
Q Consensus 949 ddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l---~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s 1022 (1251)
+.++|++.+++.+...+... +.++ .+|...+||+||+|+|||+||+++|+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 35899999999998887631 1121 3444458999999999999999999988 46899999877532
Q ss_pred -----cccCchHHH-----HHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCc-------cc
Q 000858 1023 -----KWFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1085 (1251)
Q Consensus 1023 -----~~~G~se~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~-------~k 1085 (1251)
.++|....+ ...+....++.+.+||+|||||.+ + ..+.+.|+..++... .-
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~-------~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----H-------PDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----C-------HHHHHHHHHHhccCceecCCCcEE
Confidence 122221111 123445555555689999999987 2 234444454444321 11
Q ss_pred CCccEEEEEecCCCCC-------------------------------------CcHHHHhcccccccCCCCCHHHHHHHH
Q 000858 1086 DKERVLVLAATNRPFD-------------------------------------LDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1251)
Q Consensus 1086 ~~~~VlVIaTTN~p~~-------------------------------------Ld~aLlrRF~~~I~l~lPd~eeR~eIL 1128 (1251)
+-.+.+||+|||.... +.|+|+.|++.++.|.+.+.++..+|+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH
Confidence 2357899999874210 235678899999999999999999999
Q ss_pred HHHHhhcc---------cC-ChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 000858 1129 RVILAKEE---------LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1172 (1251)
Q Consensus 1129 ~~ll~k~~---------l~-~dvdl~~LA~~T--~GySgaDL~~L~~~Aa~~airr 1172 (1251)
+..+.... +. ++...+.|+... ..|..+.|+.+++.-...++.+
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 88876521 11 233355566542 2444566666665555444443
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.7e-17 Score=196.68 Aligned_cols=248 Identities=36% Similarity=0.537 Sum_probs=216.9
Q ss_pred ccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceE
Q 000858 968 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVV 1047 (1251)
Q Consensus 968 pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsIL 1047 (1251)
|+..++.|...+ ..++.+++++||||+|||.++++++.+ +..+..++.+...+++.|..+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 566777777766 456699999999999999999999999 777788889999999999999999999999999999999
Q ss_pred EEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccCCCCCHHHHH
Q 000858 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE 1125 (1251)
Q Consensus 1048 fIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~ 1125 (1251)
++||+|.+.+.+.. ........+..+++..++++. ... +++++.+|++..+++++++ ||+..+.+..|+...|.
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988776 555677889999999999988 445 9999999999999999999 99999999999999999
Q ss_pred HHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccH
Q 000858 1126 KIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKM 1205 (1251)
Q Consensus 1126 eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~ 1205 (1251)
+|+...........+.+...++..+.||.++++..+|..+...++++.+ ........+++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~~ 216 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVTE 216 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCcccccccH
Confidence 9999998887777788999999999999999999999999988888753 00112346899
Q ss_pred HHHHHHHHHhcccccccccchhhhhhHHHHhcCCCccc
Q 000858 1206 DDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1243 (1251)
Q Consensus 1206 eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~~Rk 1243 (1251)
+||.++++.+.++ ++.....+.+.|.|+||++..|.
T Consensus 217 ~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 217 DDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 9999999999998 67777789999999999988764
No 58
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.71 E-value=1e-15 Score=195.96 Aligned_cols=166 Identities=22% Similarity=0.346 Sum_probs=109.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000858 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1251)
Q Consensus 949 ddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~---~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s 1022 (1251)
..++|++.+++.+.+.+... +.++. +|...+||+||+|||||++|++||..+ +.+++.++|+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 46889999999998887631 11222 333468999999999999999999887 56799999877543
Q ss_pred c-----ccCchHHH----HHHHHHHH-HhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCc-------cc
Q 000858 1023 K-----WFGEGEKY----VKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1085 (1251)
Q Consensus 1023 ~-----~~G~se~~----I~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~-------~k 1085 (1251)
. .+|....+ -...+..+ +..+.+|||||||+.+ ++. +.+.|+..++... ..
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~~-------v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HPD-------VFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CHH-------HHHHHHHHHhhCceecCCceEE
Confidence 2 12211110 01223333 3344489999999977 222 2233333332110 01
Q ss_pred CCccEEEEEecCCC-------------------------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000858 1086 DKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1086 ~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
+-.+.+||+|||.. ..+.++|+.|++.++.|.+++.++..+|++.++..
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 12456789999862 13457888999999999999999999999888865
No 59
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-15 Score=189.03 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=121.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK 1023 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l---~~P~~gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~~s~L~s~ 1023 (1251)
.++|++++...+-+.+.. .+.++ .+|...+||.||+|+|||-||+++|..+. -.++.++|+++..+
T Consensus 492 rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 489999999999988864 23333 45555689999999999999999999995 89999999886533
Q ss_pred ------------ccCchHHHHHHHHHHHHh-cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccC----
Q 000858 1024 ------------WFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD---- 1086 (1251)
Q Consensus 1024 ------------~~G~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~---- 1086 (1251)
|+|..+ .+.+.+|-+ .+.+||+|||||.- ...+++.|++.+|...-.+
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCC
Confidence 344333 234555544 44589999999864 3567888888887544332
Q ss_pred ---CccEEEEEecCCC----------------------------CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000858 1087 ---KERVLVLAATNRP----------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1087 ---~~~VlVIaTTN~p----------------------------~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
=.+.+||+|+|-- ..+.|+|+.|++.+|.|...+.+...+|+...+..
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 2578999999731 12446888899999999999999999999888765
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=5.9e-15 Score=189.43 Aligned_cols=205 Identities=21% Similarity=0.323 Sum_probs=133.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000858 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1251)
Q Consensus 949 ddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l---~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s 1022 (1251)
..+.|++.+++.+.+.+... +.++ .+|...+||+||+|||||++|++||..+ +.+++.++++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45899999999998887631 1122 2455569999999999999999999987 57899999977533
Q ss_pred c-----ccCchHHH-----HHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCc-------cc
Q 000858 1023 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1085 (1251)
Q Consensus 1023 ~-----~~G~se~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~-------~k 1085 (1251)
. .+|....+ ...+....++.+.+||||||||.+ ++ .+.+.|+..++... ..
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~~-------~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----HP-------DVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----CH-------HHHHHHHHHHhcCceecCCCeEE
Confidence 2 12211110 122333344555589999999977 22 23333333332211 01
Q ss_pred CCccEEEEEecCCCC-------------------------CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc-----
Q 000858 1086 DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----- 1135 (1251)
Q Consensus 1086 ~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~----- 1135 (1251)
+-.+.+||+|||... .+.+.|+.|++.++.|.+++.++..+|+...+...
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 125678999998721 13467777999999999999999999988877531
Q ss_pred --cc---CChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHHH
Q 000858 1136 --EL---ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREI 1173 (1251)
Q Consensus 1136 --~l---~~dvdl~~LA~~T--~GySgaDL~~L~~~Aa~~airri 1173 (1251)
.+ .++..++.|+... ..+..+.|+++++.....++.+.
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 11 1333455666652 24667888888888776666553
No 61
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.68 E-value=2.2e-16 Score=190.20 Aligned_cols=239 Identities=20% Similarity=0.219 Sum_probs=173.8
Q ss_pred cccCCCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 000858 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1251)
Q Consensus 442 ~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~ 521 (1251)
++++-...+++|++.--+ ++.|.-|....-.+.. ....|+ + +..+.|||.|||| ..+.+||||+|++++++
T Consensus 216 ~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 216 EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKSLTAKAIANDWQLP 286 (489)
T ss_pred ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHHHHHHHHHHHhCCC
Confidence 456666678889888886 8888888764322211 112343 3 3457899999999 78999999999999999
Q ss_pred EEEEeccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccC
Q 000858 522 LLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKK 601 (1251)
Q Consensus 522 LL~lDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1251)
|+.+|...+++++-.|+
T Consensus 287 ~~~l~~~~l~~~~vGes--------------------------------------------------------------- 303 (489)
T CHL00195 287 LLRLDVGKLFGGIVGES--------------------------------------------------------------- 303 (489)
T ss_pred EEEEEhHHhcccccChH---------------------------------------------------------------
Confidence 99999755444221111
Q ss_pred CCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCC
Q 000858 602 GDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSL 681 (1251)
Q Consensus 602 gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~ 681 (1251)
T Consensus 304 -------------------------------------------------------------------------------- 303 (489)
T CHL00195 304 -------------------------------------------------------------------------------- 303 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC---------hhhHHHHHHHHhcCCCCEEEEeeccCCCcccc
Q 000858 682 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVVIGSHTQLDSRKE 752 (1251)
Q Consensus 682 ~~~~~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~~---------~~~~~~l~~~L~~L~g~VvvIgs~~~~d~~k~ 752 (1251)
...+..+|+.+.. .+|.||||||+|+++.+. .++...|-..|..-..+|+|||+||
T Consensus 304 -----e~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN------- 368 (489)
T CHL00195 304 -----ESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN------- 368 (489)
T ss_pred -----HHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC-------
Confidence 1125666666555 789999999999977631 2334444444454567899999999
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhh
Q 000858 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1251)
Q Consensus 753 k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 830 (1251)
.|+.+|+ |++| ||++.+++++|+.
T Consensus 369 -----------------------~~~~Ld~-------------------------------allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 369 -----------------------NIDLLPL-------------------------------EILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred -----------------------ChhhCCH-------------------------------HHhCCCcCCeEEEeCCcCH
Confidence 4455555 8888 9999999999999
Q ss_pred hcccchhHHHHHhhhC-CCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhh
Q 000858 831 KGQSNIISIRSVLSRN-GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1251)
Q Consensus 831 ~gR~~Il~IhT~l~~~-~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~ 909 (1251)
..|.+|+++|.....+ ...+.+++.||..|.||+|+||+.+|.+|...|+.... .+...||..
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~----------------~lt~~dl~~ 458 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR----------------EFTTDDILL 458 (489)
T ss_pred HHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC----------------CcCHHHHHH
Confidence 9999999999764333 34688999999999999999999999999988874211 134677777
Q ss_pred hhhhhhhh
Q 000858 910 IQSESKSL 917 (1251)
Q Consensus 910 al~eik~~ 917 (1251)
+...++|+
T Consensus 459 a~~~~~Pl 466 (489)
T CHL00195 459 ALKQFIPL 466 (489)
T ss_pred HHHhcCCC
Confidence 76666654
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=4.8e-16 Score=168.31 Aligned_cols=198 Identities=22% Similarity=0.287 Sum_probs=126.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
..+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 358999999999999988776532221 234468999999999999999999999999999888765422
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHh-hccCCcccC------CccEEEEEecC
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTKD------KERVLVLAATN 1097 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~-~ldgl~~k~------~~~VlVIaTTN 1097 (1251)
...+..++.... ...||||||||+| +...++.+...+..+.. .+-|..+.. -.++-+|+||+
T Consensus 89 ----~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT 157 (233)
T PF05496_consen 89 ----AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT 157 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES
T ss_pred ----HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec
Confidence 123344444332 3579999999988 44455555555554433 122222111 14688999999
Q ss_pred CCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000858 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1251)
Q Consensus 1098 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~A 1165 (1251)
+...|...++.||..+..+...+.++..+|++.-....++. ++....+||..+.| +++-..+|++++
T Consensus 158 r~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 158 RAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp SGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred cccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 99999999999999888999999999999998776665544 44557889999987 455555555544
No 63
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=9.8e-16 Score=193.82 Aligned_cols=185 Identities=25% Similarity=0.387 Sum_probs=140.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V 1015 (1251)
..+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3677899999998887776642 123579999999999999999999987 7789999
Q ss_pred eccccc--ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCch-HHHHHHHHHhHHhhccCCcccCCccEEE
Q 000858 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1251)
Q Consensus 1016 ~~s~L~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~e~~~~il~~LL~~ldgl~~k~~~~VlV 1092 (1251)
++..+. ..+.|+.+..++.+|..+.+..+.||||||||.|++.+...+. .... .++. ..+ .++.+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L~---~~l------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLLK---PAL------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHHH---HHH------hCCCeEE
Confidence 988877 4688999999999999998888999999999999876432222 1211 2222 222 2367899
Q ss_pred EEecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc----c-CChhcHHHHHHHcCCCcH
Q 000858 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~----l-~~dvdl~~LA~~T~GySg 1155 (1251)
|++|+.. ...|+++.|||. .|.++.|+.+++.+|++.+..... + ..+..+..++..+..|-+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 9999863 468999999995 799999999999999998776521 1 245556777777766643
No 64
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-15 Score=177.18 Aligned_cols=220 Identities=16% Similarity=0.290 Sum_probs=168.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
..+|+.++...+.|+.|.+-+...+...+.|.+-|... .+|.|||||||||||+++.|||+++++.++.++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw-KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW-KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcch-hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 47899999999999999999998899999998876443 3789999999999999999999999999999988775432
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCch-----HH-HHHHHHHhHHhhccCCcccCCccEEEEEecCC
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-----HE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-----~e-~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1098 (1251)
. -++.+...+. ..+||+|.+||.-+.-+..... +. ...-.+.-|+..+||+......--+||.|||.
T Consensus 275 ---~--dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ---S--DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---H--HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 2 2666655443 3489999999987643322111 10 12245677899999999887677899999999
Q ss_pred CCCCcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCC--CcHHHHHHHHHH---HHhhhhH
Q 000858 1099 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLCVT---AAHCPIR 1171 (1251)
Q Consensus 1099 p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~G--ySgaDL~~L~~~---Aa~~air 1171 (1251)
++.||||++| |++..|++...+.+.-..++..|+.-.. +..-+.+|.+..++ .+++|+...... .+-.+++
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk 425 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALK 425 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHH
Confidence 9999999999 9999999999999999999999987633 22334555555444 589998754432 3455555
Q ss_pred HHHH
Q 000858 1172 EILE 1175 (1251)
Q Consensus 1172 riie 1175 (1251)
++++
T Consensus 426 ~Lv~ 429 (457)
T KOG0743|consen 426 GLVE 429 (457)
T ss_pred HHHH
Confidence 5554
No 65
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.64 E-value=4.7e-16 Score=201.63 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhccCh---hhHHHHHHHHhcC-----CCCEEEEeeccCCCcccccCCCCC
Q 000858 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN---DAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGG 758 (1251)
Q Consensus 687 k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~~~---~~~~~l~~~L~~L-----~g~VvvIgs~~~~d~~k~k~~~~~ 758 (1251)
..-+..+|+.+.. ..|+||||||||. |+.+. ...+.|...|+.. ..+||||||||
T Consensus 1718 ~~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN------------- 1780 (2281)
T CHL00206 1718 RFYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH------------- 1780 (2281)
T ss_pred HHHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC-------------
Confidence 3448888988877 8999999999999 56432 2355666666654 23799999999
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccch
Q 000858 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 836 (1251)
Q Consensus 759 ~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 836 (1251)
+||.+|| ||+| ||++++++++|+..+|..|
T Consensus 1781 -----------------RPD~LDP-------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~ki 1812 (2281)
T CHL00206 1781 -----------------IPQKVDP-------------------------------ALIAPNKLNTCIKIRRLLIPQQRKH 1812 (2281)
T ss_pred -----------------CcccCCH-------------------------------hHcCCCCCCeEEEeCCCCchhHHHH
Confidence 7888887 9999 9999999999999999999
Q ss_pred hHHHHHhhhCCC--CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 000858 837 ISIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1251)
Q Consensus 837 l~IhT~l~~~~l--~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~ 883 (1251)
+.|+...+.-.+ .+++++.+|..|.||+||||+.||.+|++.|+.+.
T Consensus 1813 L~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1813 FFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 987643333333 34689999999999999999999999999998754
No 66
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=6.9e-15 Score=168.53 Aligned_cols=181 Identities=25% Similarity=0.457 Sum_probs=133.0
Q ss_pred CCCcccccCcHHHH---HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 945 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 945 ~~tfddI~Gle~vk---~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
..++++++|++.+. ..|++.+.. + ...+++||||||||||+||+.||...+.+|..++...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~----------~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA----------G----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc----------C----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 45789999999887 345565541 2 2357999999999999999999999999999998643
Q ss_pred ccccCchHHHHHHHHHHHHhcC----CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEec-
Q 000858 1022 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 1096 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTT- 1096 (1251)
.+.+.++.+|+.|++.. ..|||||||+++ +..+|. .|+-.+ +++.|++|++|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD-------~lLp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQD-------ALLPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhh-------hhhhhh------cCCeEEEEeccC
Confidence 34567999999996543 489999999987 322332 233333 33678888877
Q ss_pred -CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh--cccC------ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000858 1097 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1097 -N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k--~~l~------~dvdl~~LA~~T~GySgaDL~~L~~~Aa 1166 (1251)
|+.+.|++++++|. +++.+.+.+.++..++++..+.. ..+. ++.-++.|+..++|-..+-| ++++.++
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~ 217 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAA 217 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHH
Confidence 77899999999998 78999999999999999884433 2222 34457778888888655444 3334444
No 67
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=1.7e-14 Score=164.19 Aligned_cols=199 Identities=21% Similarity=0.249 Sum_probs=137.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccC
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1026 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G 1026 (1251)
+|++++|++++++.|..++.....+ ..++.+++|+||||||||+||+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK---- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----
Confidence 6899999999999999887531111 223467999999999999999999999998877666543221
Q ss_pred chHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhc--cCC-cc----cCCccEEEEEecCCC
Q 000858 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGL-RT----KDKERVLVLAATNRP 1099 (1251)
Q Consensus 1027 ~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~l--dgl-~~----k~~~~VlVIaTTN~p 1099 (1251)
...+...+... ..+.||||||||.+- ....+.+..+++.....+ ... .. ....++.+|++|+++
T Consensus 69 --~~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 69 --PGDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred --chhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 11222222222 246899999999883 222333333333222111 100 00 011347899999999
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000858 1100 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1251)
Q Consensus 1100 ~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~ 1168 (1251)
..+++++++||...+.+..|+.+++.++++..+....+. ++..++.|+..+.|+. +.+.+++..+...
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 999999999998888999999999999999988765443 4556788999998865 5566777765533
No 68
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=4.2e-14 Score=163.32 Aligned_cols=201 Identities=21% Similarity=0.256 Sum_probs=140.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~ 1025 (1251)
.+|++++|+++.++.|..++..... . ..++.++||+||||||||++|+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4799999999999999887753111 1 235578999999999999999999999999887776554321
Q ss_pred CchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhh--ccCCccc-----CCccEEEEEecCC
Q 000858 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTK-----DKERVLVLAATNR 1098 (1251)
Q Consensus 1026 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~--ldgl~~k-----~~~~VlVIaTTN~ 1098 (1251)
...+..++... ..++||||||||.+- ....+.+..+++.+... ++..... .-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12344444433 346899999999882 22233333333322111 1110000 1134788999999
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000858 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1251)
Q Consensus 1099 p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~a 1169 (1251)
+..+++.+++||...+.++.|+.+++.+|++.......+. ++..++.|+..+.|+. +.+..++..+...+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 9999999999998889999999999999999988876554 4555888999998864 66666666654433
No 69
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=178.87 Aligned_cols=232 Identities=20% Similarity=0.282 Sum_probs=171.1
Q ss_pred CccccccccccccchhHHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000858 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1251)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~l 525 (1251)
+.-+|+|++.--+ |..|.-|..+.-..|++++.. +++ +. ..+.|||.||+| ..+.+||||+|++.++.++-+
T Consensus 138 ~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l~-~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 138 EKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--ID-PPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--CC-CCceEEEECCCC--CCHHHHHHHHHHhcCCCEEEE
Confidence 4678999998887 999999999998899998763 332 33 457899999999 799999999999988877655
Q ss_pred eccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCee
Q 000858 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1251)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1251)
..+.+..
T Consensus 211 ~~s~l~~------------------------------------------------------------------------- 217 (398)
T PTZ00454 211 VGSEFVQ------------------------------------------------------------------------- 217 (398)
T ss_pred ehHHHHH-------------------------------------------------------------------------
Confidence 4211100
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcchh
Q 000858 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1251)
Q Consensus 606 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 685 (1251)
+|+|.
T Consensus 218 k~~ge--------------------------------------------------------------------------- 222 (398)
T PTZ00454 218 KYLGE--------------------------------------------------------------------------- 222 (398)
T ss_pred Hhcch---------------------------------------------------------------------------
Confidence 11110
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhh---HHHHHHHHhcCC--CCEEEEeeccCCCcccc
Q 000858 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDA---YGALKSKLENLP--SNVVVIGSHTQLDSRKE 752 (1251)
Q Consensus 686 ~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~~--------~~~---~~~l~~~L~~L~--g~VvvIgs~~~~d~~k~ 752 (1251)
....+..+|+.+.. .+|.||||||+|.++... .+. ...|...++.+. .+|+||++||
T Consensus 223 ~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN------- 292 (398)
T PTZ00454 223 GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN------- 292 (398)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC-------
Confidence 11235667776655 899999999999965421 122 222333344332 4899999999
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhh
Q 000858 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1251)
Q Consensus 753 k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 830 (1251)
.||.+|+ |++| ||++++++++|+.
T Consensus 293 -----------------------~~d~LDp-------------------------------AllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 293 -----------------------RADTLDP-------------------------------ALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred -----------------------CchhCCH-------------------------------HHcCCCcccEEEEeCCcCH
Confidence 5566665 8888 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhh
Q 000858 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1251)
Q Consensus 831 ~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~ 909 (1251)
..|..|+++|+.. .++ .+++++.|+..|.||+|+||+.+|.+|...|+.+.. ..+...||..
T Consensus 319 ~~R~~Il~~~~~~--~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~---------------~~i~~~df~~ 381 (398)
T PTZ00454 319 RQKRLIFQTITSK--MNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR---------------YVILPKDFEK 381 (398)
T ss_pred HHHHHHHHHHHhc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CccCHHHHHH
Confidence 9999999999752 234 678999999999999999999999999999986431 1445677776
Q ss_pred hhhhh
Q 000858 910 IQSES 914 (1251)
Q Consensus 910 al~ei 914 (1251)
+...+
T Consensus 382 A~~~v 386 (398)
T PTZ00454 382 GYKTV 386 (398)
T ss_pred HHHHH
Confidence 65543
No 70
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.61 E-value=2.6e-15 Score=177.21 Aligned_cols=234 Identities=22% Similarity=0.272 Sum_probs=170.5
Q ss_pred CccccccccccccchhHHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000858 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1251)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~l 525 (1251)
+..+++|+++..+ |..+.-|..+....+++++.. +++ +. ..+.|||+||+| ....+||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~~-~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--IE-PPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--CC-CCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4567899998887 888899999888888887753 332 22 235799999999 789999999999999887776
Q ss_pred eccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCee
Q 000858 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1251)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1251)
+.+.+..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 5422211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcchh
Q 000858 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1251)
Q Consensus 606 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 685 (1251)
+|+|.
T Consensus 204 ~~~g~--------------------------------------------------------------------------- 208 (389)
T PRK03992 204 KFIGE--------------------------------------------------------------------------- 208 (389)
T ss_pred hhccc---------------------------------------------------------------------------
Confidence 01110
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEeeccCCCcccc
Q 000858 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKE 752 (1251)
Q Consensus 686 ~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L~-----g~VvvIgs~~~~d~~k~ 752 (1251)
....+..+|+.+.. ..|.||||||+|.++.. ..+.-..+...|..+. ++|+|||++|+
T Consensus 209 ~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~------ 279 (389)
T PRK03992 209 GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR------ 279 (389)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC------
Confidence 11235667776655 88999999999996542 1233223333333332 48999999993
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhh
Q 000858 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1251)
Q Consensus 753 k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 830 (1251)
||.+|+ |++| ||++.+++++|+.
T Consensus 280 ------------------------~~~ld~-------------------------------allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 280 ------------------------IDILDP-------------------------------AILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred ------------------------hhhCCH-------------------------------HHcCCccCceEEEECCCCH
Confidence 344454 8888 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhh
Q 000858 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1251)
Q Consensus 831 ~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~ 909 (1251)
..|.+|+++|.. ...+ .+.++..||..|.||+|+||+.+|++|...|+.+.. -.+...||+.
T Consensus 305 ~~R~~Il~~~~~--~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~ 367 (389)
T PRK03992 305 EGRLEILKIHTR--KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---------------TEVTMEDFLK 367 (389)
T ss_pred HHHHHHHHHHhc--cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHH
Confidence 999999999964 3334 458899999999999999999999999999987421 1356778888
Q ss_pred hhhhhhh
Q 000858 910 IQSESKS 916 (1251)
Q Consensus 910 al~eik~ 916 (1251)
|...+.+
T Consensus 368 A~~~~~~ 374 (389)
T PRK03992 368 AIEKVMG 374 (389)
T ss_pred HHHHHhc
Confidence 7766654
No 71
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.5e-15 Score=184.70 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=169.1
Q ss_pred CCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000858 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1251)
Q Consensus 446 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~l 525 (1251)
-.++.|+|+++--- |..|.-|.+-+- .||+++. |.+-=.-.-+.+||+|||| .....||||+|-+-|++++-+
T Consensus 303 ~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCceeee
Confidence 67888999999888 999999999876 7999875 5443355568899999999 799999999999999998765
Q ss_pred eccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCee
Q 000858 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1251)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1251)
-.+.|- |
T Consensus 376 SGSEFv----------------E--------------------------------------------------------- 382 (774)
T KOG0731|consen 376 SGSEFV----------------E--------------------------------------------------------- 382 (774)
T ss_pred chHHHH----------------H---------------------------------------------------------
Confidence 432110 0
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcchh
Q 000858 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1251)
Q Consensus 606 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 685 (1251)
.|+|. ..=
T Consensus 383 ~~~g~--------------------------------------------------------------~as---------- 390 (774)
T KOG0731|consen 383 MFVGV--------------------------------------------------------------GAS---------- 390 (774)
T ss_pred Hhccc--------------------------------------------------------------chH----------
Confidence 11111 000
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc----------cC---hhhHHHHHHHHhcC--CCCEEEEeeccCCCcc
Q 000858 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT----------GN---NDAYGALKSKLENL--PSNVVVIGSHTQLDSR 750 (1251)
Q Consensus 686 ~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~----------~~---~~~~~~l~~~L~~L--~g~VvvIgs~~~~d~~ 750 (1251)
.++.||..... ..|.|||||+||. ++ +| .+.++.+--.++.+ .+.||||++||
T Consensus 391 ---rvr~lf~~ar~---~aP~iifideida-~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn----- 458 (774)
T KOG0731|consen 391 ---RVRDLFPLARK---NAPSIIFIDEIDA-VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN----- 458 (774)
T ss_pred ---HHHHHHHHhhc---cCCeEEEeccccc-ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC-----
Confidence 16677776666 9999999999998 44 22 34555555556655 34899999999
Q ss_pred cccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhh
Q 000858 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 828 (1251)
Q Consensus 751 k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lp 828 (1251)
+||-+|+ |||| ||+|++.+++|
T Consensus 459 -------------------------r~d~ld~-------------------------------allrpGRfdr~i~i~~p 482 (774)
T KOG0731|consen 459 -------------------------RPDILDP-------------------------------ALLRPGRFDRQIQIDLP 482 (774)
T ss_pred -------------------------CccccCH-------------------------------HhcCCCccccceeccCC
Confidence 5555665 9999 99999999999
Q ss_pred hhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 000858 829 TLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1251)
Q Consensus 829 d~~gR~~Il~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~ 883 (1251)
|+++|.+|+++|-....-..+++++..||.+|.||+||||..||++|+..|.++.
T Consensus 483 ~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 483 DVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred chhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc
Confidence 9999999999996522222588899999999999999999999999999998743
No 72
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=2e-14 Score=183.00 Aligned_cols=212 Identities=18% Similarity=0.249 Sum_probs=141.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1021 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~-------- 1021 (1251)
++.|++++++.+.+++.....+. . .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------K--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------C--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 58999999999999876432211 1 1223799999999999999999999999999999875432
Q ss_pred -ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHh-----HHhhccCCcccCCccEEEEEe
Q 000858 1022 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1095 (1251)
Q Consensus 1022 -s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~-----LL~~ldgl~~k~~~~VlVIaT 1095 (1251)
..|.|.....+.+.|..+....| ||||||||.+...... .....+..++.. |+....+.. -+..++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~-~d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVP-FDLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCce-eccCCEEEEEe
Confidence 24566666677788888766555 8999999999643221 111222222211 111111111 12257899999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-----ccc------CChhcHHHHHH-HcCCCcHHHHHHHHH
Q 000858 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EEL------ASDVDLEGIAN-MADGYSGSDLKNLCV 1163 (1251)
Q Consensus 1096 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k-----~~l------~~dvdl~~LA~-~T~GySgaDL~~L~~ 1163 (1251)
||..+.+++++++|| .+|.|+.|+.+++.+|++.++.. ..+ .++..+..|++ .+..+..++|+.++.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 58899999999999999887632 111 12333455554 233445567776666
Q ss_pred HHHhhhhHHH
Q 000858 1164 TAAHCPIREI 1173 (1251)
Q Consensus 1164 ~Aa~~airri 1173 (1251)
..+..+.+++
T Consensus 549 ~~~~~~~~~~ 558 (775)
T TIGR00763 549 KICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHH
Confidence 6665554444
No 73
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.59 E-value=2.6e-14 Score=174.82 Aligned_cols=201 Identities=22% Similarity=0.300 Sum_probs=134.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 1014 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~ 1014 (1251)
..+|++++|.+..++.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 46899999999999988865431 123589999999999999999998653 468999
Q ss_pred Eecccc-------cccccCchHH----------------HHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHH
Q 000858 1015 ISMSSI-------TSKWFGEGEK----------------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1251)
Q Consensus 1015 V~~s~L-------~s~~~G~se~----------------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~i 1071 (1251)
++|... ....++.... ...+.+. +...++||||||+.| ++..+..+.++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L-----~~~~q~~LL~~ 198 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGEL-----HPVQMNKLLKV 198 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhC-----CHHHHHHHHHH
Confidence 998642 1111111000 0011222 223489999999998 44444455555
Q ss_pred HHhHHhhccC-----Cc------------ccCCccEEEE-EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000858 1072 KNEFMVNWDG-----LR------------TKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1133 (1251)
Q Consensus 1072 l~~LL~~ldg-----l~------------~k~~~~VlVI-aTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~ 1133 (1251)
+++....+.+ .. ..-+..+++| +||+.++.+++++++|+ ..+.++.++.+++.+|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 5443222211 00 0011234444 55678999999999998 5778888899999999999998
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhh
Q 000858 1134 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPI 1170 (1251)
Q Consensus 1134 k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~ai 1170 (1251)
+..+. ++..++.|+..+ ++++++.++++.|+..+.
T Consensus 278 k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIAL 313 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHh
Confidence 86644 444566666655 378999999999886553
No 74
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=3e-14 Score=179.37 Aligned_cols=197 Identities=20% Similarity=0.299 Sum_probs=143.6
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V~ 1016 (1251)
.++.++|.++....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 456789999988888886652 122578999999999999999999875 45566666
Q ss_pred ccccc--ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEE
Q 000858 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1251)
Q Consensus 1017 ~s~L~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIa 1094 (1251)
...+. ..+.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ .+..+.||+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 65555 3567888999999999998888999999999999877643232222233333333 236799999
Q ss_pred ecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChh-----cHHHHHHHcC-----CCcHHHHH
Q 000858 1095 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-----DLEGIANMAD-----GYSGSDLK 1159 (1251)
Q Consensus 1095 TTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dv-----dl~~LA~~T~-----GySgaDL~ 1159 (1251)
+|+.++ ..|+++.|||. .|.|+.|+.+++..||+.+..+.....++ .+..++..+. .+.+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998754 67999999995 89999999999999999887664433233 3444444343 34455677
Q ss_pred HHHHHHHh
Q 000858 1160 NLCVTAAH 1167 (1251)
Q Consensus 1160 ~L~~~Aa~ 1167 (1251)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 77777764
No 75
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.8e-15 Score=164.41 Aligned_cols=144 Identities=22% Similarity=0.331 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCccccc
Q 000858 688 LAINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEK 753 (1251)
Q Consensus 688 ~~~~~l~evl~ses~~~P~Ilf~~die~~l~---------~~~~~~~~l~~~L~~L-----~g~VvvIgs~~~~d~~k~k 753 (1251)
.++.+||.|+.+ +.|.|+|||+||. +. +..++-......|..| +|-|-||-|||+.++
T Consensus 265 klvRqlF~vA~e---~apSIvFiDEIdA-iGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~---- 336 (440)
T KOG0726|consen 265 KLVRELFRVAEE---HAPSIVFIDEIDA-IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET---- 336 (440)
T ss_pred HHHHHHHHHHHh---cCCceEEeehhhh-hccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc----
Confidence 458999999988 9999999999999 44 3355555555666666 459999999997665
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhh
Q 000858 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1251)
Q Consensus 754 ~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 831 (1251)
+|| ||.| |.+|.++|++||++
T Consensus 337 ------------------LDP---------------------------------------aLiRPGrIDrKIef~~pDe~ 359 (440)
T KOG0726|consen 337 ------------------LDP---------------------------------------ALIRPGRIDRKIEFPLPDEK 359 (440)
T ss_pred ------------------cCH---------------------------------------hhcCCCccccccccCCCchh
Confidence 333 9999 99999999999999
Q ss_pred cccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhh
Q 000858 832 GQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 910 (1251)
Q Consensus 832 gR~~Il~IhT~-l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~a 910 (1251)
.++.|++|||- |.- -.+++|++|-....-++||||.++|++|-..|++.+ .++++..||..+
T Consensus 360 TkkkIf~IHTs~Mtl--~~dVnle~li~~kddlSGAdIkAictEaGllAlRer---------------Rm~vt~~DF~ka 422 (440)
T KOG0726|consen 360 TKKKIFQIHTSRMTL--AEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER---------------RMKVTMEDFKKA 422 (440)
T ss_pred hhceeEEEeecccch--hccccHHHHhhcccccccccHHHHHHHHhHHHHHHH---------------HhhccHHHHHHH
Confidence 99999999995 431 278999999999999999999999999999998743 246678888776
Q ss_pred hhh
Q 000858 911 QSE 913 (1251)
Q Consensus 911 l~e 913 (1251)
...
T Consensus 423 ~e~ 425 (440)
T KOG0726|consen 423 KEK 425 (440)
T ss_pred HHH
Confidence 543
No 76
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.6e-15 Score=159.15 Aligned_cols=147 Identities=20% Similarity=0.227 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccC
Q 000858 688 LAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKS 754 (1251)
Q Consensus 688 ~~~~~l~evl~ses~~~P~Ilf~~die~~l~--------~~~~~~~~l~~~L~~L~g-----~VvvIgs~~~~d~~k~k~ 754 (1251)
+.+.+||=++.+ +.|.|||+|+||.+=. +..+.-......|.+|.| ++-||-|||+.|-
T Consensus 227 rmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi----- 298 (404)
T KOG0728|consen 227 RMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI----- 298 (404)
T ss_pred HHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc-----
Confidence 348899999888 9999999999998422 345555556666777766 9999999997554
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhc
Q 000858 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 832 (1251)
Q Consensus 755 ~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~g 832 (1251)
+| +|||| |.+|.++|+-|+.++
T Consensus 299 -----------------ld---------------------------------------~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 299 -----------------LD---------------------------------------PALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred -----------------cc---------------------------------------HhhcCCCcccccccCCCCCHHH
Confidence 23 29999 999999999999999
Q ss_pred ccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhh
Q 000858 833 QSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 912 (1251)
Q Consensus 833 R~~Il~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~ 912 (1251)
|.+||+||++.- |-.-..+|..+|++..|-+||+++++|++|--||+... .+-++..||+.+..
T Consensus 323 r~~ilkihsrkm-nl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer---------------rvhvtqedfemav~ 386 (404)
T KOG0728|consen 323 RLDILKIHSRKM-NLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER---------------RVHVTQEDFEMAVA 386 (404)
T ss_pred HHHHHHHhhhhh-chhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh---------------hccccHHHHHHHHH
Confidence 999999998721 22356789999999999999999999999999998732 24556778877754
Q ss_pred hh
Q 000858 913 ES 914 (1251)
Q Consensus 913 ei 914 (1251)
++
T Consensus 387 kv 388 (404)
T KOG0728|consen 387 KV 388 (404)
T ss_pred HH
Confidence 43
No 77
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.7e-15 Score=172.14 Aligned_cols=211 Identities=20% Similarity=0.274 Sum_probs=163.0
Q ss_pred ccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccC
Q 000858 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1251)
Q Consensus 450 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lDs~~ 529 (1251)
+|-|+.||-- +..|..|.+++-..+...+.. .+|.+.-+.|||.||+| ....||+||+|-+.+|.+.-+-.+.
T Consensus 149 ~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F---~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 149 NVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF---LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred cccccCCcch--hhHHHHhhhhhhhcccchHhh---hccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHHH
Confidence 5789999998 899999999999888877763 48888889999999999 7999999999999999876555443
Q ss_pred CCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCeeeeec
Q 000858 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1251)
Q Consensus 530 ~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~g 609 (1251)
|++ ||+|
T Consensus 222 Lts-------------------------------------------------------------------------K~~G 228 (428)
T KOG0740|consen 222 LTS-------------------------------------------------------------------------KYVG 228 (428)
T ss_pred hhh-------------------------------------------------------------------------hccC
Confidence 333 2222
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcchhHHHH
Q 000858 610 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 689 (1251)
Q Consensus 610 ~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k~~ 689 (1251)
+..-+
T Consensus 229 ---------------------------------------------------------------------------e~eK~ 233 (428)
T KOG0740|consen 229 ---------------------------------------------------------------------------ESEKL 233 (428)
T ss_pred ---------------------------------------------------------------------------hHHHH
Confidence 12334
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC----CCCEEEEeeccCCCcccccCCCC
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPG 757 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L----~g~VvvIgs~~~~d~~k~k~~~~ 757 (1251)
+.+||+|+.. .+|.|+||+|||.+|+. +.++...|.-.++.. ..+|+||||||
T Consensus 234 vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN------------ 298 (428)
T KOG0740|consen 234 VRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN------------ 298 (428)
T ss_pred HHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC------------
Confidence 8899999988 99999999999999982 222222222112211 34999999999
Q ss_pred CceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchh
Q 000858 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 837 (1251)
Q Consensus 758 ~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il 837 (1251)
+|+.+|. |.+|||-+-+|+++||..+|..|+
T Consensus 299 ------------------~P~e~De-------------------------------a~~Rrf~kr~yiplPd~etr~~~~ 329 (428)
T KOG0740|consen 299 ------------------RPWELDE-------------------------------AARRRFVKRLYIPLPDYETRSLLW 329 (428)
T ss_pred ------------------CchHHHH-------------------------------HHHHHhhceeeecCCCHHHHHHHH
Confidence 6666664 888899888899999988887665
Q ss_pred HHHHHhh--hCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000858 838 SIRSVLS--RNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1251)
Q Consensus 838 ~IhT~l~--~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~ 881 (1251)
+=- |. .+.+.+.+++.|+..|.||+|.||..+|.+|+..-+.
T Consensus 330 ~~l--l~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 330 KQL--LKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred HHH--HHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 422 33 3566888999999999999999999999999875543
No 78
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=2.2e-13 Score=174.39 Aligned_cols=185 Identities=19% Similarity=0.339 Sum_probs=138.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V 1015 (1251)
..+++++|.++....+.+.+.. +...++||+||||+|||++|+.+|+.+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4677899999987777665541 123579999999999999999999886 3557788
Q ss_pred ecccccc--cccCchHHHHHHHHHHHHhc-CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEE
Q 000858 1016 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1251)
Q Consensus 1016 ~~s~L~s--~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlV 1092 (1251)
+...+.. .+.|+.+..++.+|..++.. .+.||||||||.|.+.+...+.+... .+ |.-.+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~-n~---Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA-NL---LKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH-HH---hhHHh------hCCCeEE
Confidence 8877653 57788899999999998754 57899999999998765433332222 12 22222 2367899
Q ss_pred EEecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc----c-CChhcHHHHHHHcCCCcH
Q 000858 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~----l-~~dvdl~~LA~~T~GySg 1155 (1251)
|+||+.. ..+|++|.||| ..|.|+.|+.+++.+||+.+..... + ..+..+..++.++.+|..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999753 46899999999 5899999999999999877765432 1 256678888898887743
No 79
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.52 E-value=1.8e-14 Score=175.06 Aligned_cols=216 Identities=24% Similarity=0.364 Sum_probs=157.6
Q ss_pred cCCCccccccccccccchhHHHHHHHHhhhhhccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 000858 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1251)
Q Consensus 444 ~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 522 (1251)
...+..+++|+++.-+ ++.|.-|..... .|++++ |.+++. ...+.|||.||+| ..+.+||||||+++++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~-~l~~~~~~~~~g~---~~~~giLL~GppG--tGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVD-FLKNPSKFTKLGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHH-HHHCHHHHHhcCC---CCCCcEEEECCCC--CCHHHHHHHHHHHcCCCe
Confidence 3455789999999877 999988887766 477765 333432 3346799999999 799999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCC
Q 000858 523 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 602 (1251)
Q Consensus 523 L~lDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 602 (1251)
+.++.+.+..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6654321100
Q ss_pred CeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCc
Q 000858 603 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 682 (1251)
Q Consensus 603 drv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~ 682 (1251)
.|+|.
T Consensus 127 ---~~~g~------------------------------------------------------------------------ 131 (495)
T TIGR01241 127 ---MFVGV------------------------------------------------------------------------ 131 (495)
T ss_pred ---HHhcc------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCc
Q 000858 683 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDS 749 (1251)
Q Consensus 683 ~~~~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~~--------~---~~~~~~l~~~L~~L~--g~VvvIgs~~~~d~ 749 (1251)
..-.+..+|+.+.. ..|.||||||+|.+... + .+..+.|...++.+. ++|+|||+||
T Consensus 132 ---~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn---- 201 (495)
T TIGR01241 132 ---GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATN---- 201 (495)
T ss_pred ---cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecC----
Confidence 00125566666654 78999999999996542 1 123333444444443 3799999999
Q ss_pred ccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhh
Q 000858 750 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 827 (1251)
Q Consensus 750 ~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~L 827 (1251)
.|+.+|+ |++| ||++++++++
T Consensus 202 --------------------------~~~~ld~-------------------------------al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 202 --------------------------RPDVLDP-------------------------------ALLRPGRFDRQVVVDL 224 (495)
T ss_pred --------------------------ChhhcCH-------------------------------HHhcCCcceEEEEcCC
Confidence 5566666 8888 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000858 828 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1251)
Q Consensus 828 pd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~ 881 (1251)
|+.+.|.+|+++|... .++ .+.+++.+|..+.||+++||+.+|++|+..+..
T Consensus 225 Pd~~~R~~il~~~l~~--~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 225 PDIKGREEILKVHAKN--KKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred CCHHHHHHHHHHHHhc--CCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999642 223 577899999999999999999999999887765
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=4.2e-13 Score=163.65 Aligned_cols=185 Identities=22% Similarity=0.249 Sum_probs=135.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|++|+|++.+++.|.+.+.. .+.+..+||+||+|+|||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999998863 223456899999999999999999999976
Q ss_pred ---------------cEEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHH
Q 000858 1011 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1251)
Q Consensus 1011 ---------------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~i 1071 (1251)
.++.++... ...-..++.+.+.+.. ....|+||||+|.|- ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 122222211 1123345665555432 223699999999882 234
Q ss_pred HHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 000858 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1251)
Q Consensus 1072 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T 1150 (1251)
.|.|+..|+. ...+++||.+|+.++.|.+.+++|+ ..+.|..++.++..+.++.++..+++. ++..++.|+...
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4566666654 2366888999999999999999999 789999999999999999888876654 334467788888
Q ss_pred CCCcHHHHHHHHHHHH
Q 000858 1151 DGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1151 ~GySgaDL~~L~~~Aa 1166 (1251)
+| +.++..+++..+.
T Consensus 216 ~G-s~RdALsLLdQai 230 (700)
T PRK12323 216 QG-SMRDALSLTDQAI 230 (700)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 77 4556666665544
No 81
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.51 E-value=3.3e-14 Score=169.30 Aligned_cols=144 Identities=21% Similarity=0.255 Sum_probs=108.2
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC-----CCCEEEEeeccCCCcccccCCC
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHP 756 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L-----~g~VvvIgs~~~~d~~k~k~~~ 756 (1251)
+..+|+.+.. ..|.||||||+|.++.. ..+....+...|..+ .++|+||++||+
T Consensus 265 vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr---------- 331 (438)
T PTZ00361 265 VRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR---------- 331 (438)
T ss_pred HHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC----------
Confidence 6667776655 78999999999997642 123333333444433 358999999994
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhccc
Q 000858 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1251)
Q Consensus 757 ~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1251)
||.+|+ |++| ||++++++++|+...|.
T Consensus 332 --------------------~d~LDp-------------------------------aLlRpGRfd~~I~~~~Pd~~~R~ 360 (438)
T PTZ00361 332 --------------------IESLDP-------------------------------ALIRPGRIDRKIEFPNPDEKTKR 360 (438)
T ss_pred --------------------hHHhhH-------------------------------HhccCCeeEEEEEeCCCCHHHHH
Confidence 334444 8887 99999999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhhh
Q 000858 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSE 913 (1251)
Q Consensus 835 ~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~e 913 (1251)
+|+++|+.. -.+ .+++++.++..+.||+|+||+.+|++|...|+++.. ..+...||..|..+
T Consensus 361 ~Il~~~~~k--~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r---------------~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 361 RIFEIHTSK--MTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR---------------MKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHhc--CCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC---------------CccCHHHHHHHHHH
Confidence 999999752 233 678999999999999999999999999999987432 13556777766555
Q ss_pred h
Q 000858 914 S 914 (1251)
Q Consensus 914 i 914 (1251)
+
T Consensus 424 v 424 (438)
T PTZ00361 424 V 424 (438)
T ss_pred H
Confidence 4
No 82
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.5e-13 Score=149.87 Aligned_cols=188 Identities=23% Similarity=0.320 Sum_probs=139.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
...|++++|++++++.|.-++.....+ ....-++|||||||.|||+||..||+++|.++...+++.+...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 457999999999999999888753332 3345689999999999999999999999999988887765421
Q ss_pred cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhc-cCCccc------CCccEEEEEecC
Q 000858 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-DGLRTK------DKERVLVLAATN 1097 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~l-dgl~~k------~~~~VlVIaTTN 1097 (1251)
.-+..++.... ...||||||||+| ++...+.+--.+..|...+ -|-.+. +-.++-+|++|.
T Consensus 92 -----gDlaaiLt~Le--~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 92 -----GDLAAILTNLE--EGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -----hhHHHHHhcCC--cCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 22333443322 3479999999998 3344444444555443322 111111 125688999999
Q ss_pred CCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 000858 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1251)
Q Consensus 1098 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GyS 1154 (1251)
+...|...++.||+....+...+.++..+|+........+. .+....+||+...|..
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999988776655 4455788999998853
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.5e-13 Score=160.85 Aligned_cols=184 Identities=18% Similarity=0.231 Sum_probs=133.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++++|++.+...|+..+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999888762 2233469999999999999999999998763
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
|+.++.+. ..+...++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 23333211 1112345555544432 234699999999882 22445556
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++. ...++++|++|+.++.|.+++++|+ .++.|..++.++-.++++.++..+++. ++..+..|++..+|- .
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~ 216 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-V 216 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-H
Confidence 55543 3367899999999999999999998 678899999999999999998877654 566688899988875 5
Q ss_pred HHHHHHHHHH
Q 000858 1156 SDLKNLCVTA 1165 (1251)
Q Consensus 1156 aDL~~L~~~A 1165 (1251)
++..++++.+
T Consensus 217 RdAL~lLeq~ 226 (484)
T PRK14956 217 RDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1e-12 Score=158.43 Aligned_cols=185 Identities=18% Similarity=0.208 Sum_probs=130.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|++++|++.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999999999887753 223457999999999999999999999865
Q ss_pred ----------cEEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1011 ----------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
.++.++++. ..+-..++.+...+... ...||||||+|.|. ...++.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 344454421 11233456666555432 24699999999882 11234445
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+...++. ++..++.|+..+.|- .
T Consensus 139 k~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gd-l 212 (472)
T PRK14962 139 KTLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGG-L 212 (472)
T ss_pred HHHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-H
Confidence 444432 245777777777789999999999 589999999999999999988776543 555678888887764 4
Q ss_pred HHHHHHHHHHH
Q 000858 1156 SDLKNLCVTAA 1166 (1251)
Q Consensus 1156 aDL~~L~~~Aa 1166 (1251)
+++.++++.++
T Consensus 213 R~aln~Le~l~ 223 (472)
T PRK14962 213 RDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHH
Confidence 44445544433
No 85
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.4e-14 Score=150.88 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccCC
Q 000858 689 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 755 (1251)
Q Consensus 689 ~~~~l~evl~ses~~~P~Ilf~~die~~l~--------~~~~~~~~l~~~L~~L~g-----~VvvIgs~~~~d~~k~k~~ 755 (1251)
++...|.+..+ ..|.||||+++|.+=. |..+.-......|..|.| .|-||.|||+.|-
T Consensus 252 LVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi------ 322 (424)
T KOG0652|consen 252 LVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI------ 322 (424)
T ss_pred HHHHHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc------
Confidence 35666777777 9999999999998422 455555555566666654 8999999996554
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcc
Q 000858 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 833 (1251)
Q Consensus 756 ~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR 833 (1251)
+|| ||+| |++|.++|++|+..+|
T Consensus 323 ------------------------LDP-------------------------------ALlRSGRLDRKIEfP~Pne~aR 347 (424)
T KOG0652|consen 323 ------------------------LDP-------------------------------ALLRSGRLDRKIEFPHPNEEAR 347 (424)
T ss_pred ------------------------cCH-------------------------------HHhhcccccccccCCCCChHHH
Confidence 333 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhh
Q 000858 834 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 912 (1251)
Q Consensus 834 ~~Il~IhT~-l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~ 912 (1251)
..|++||.+ |.- -+|++.++||..|.+|.||..+++|-+|--.|++|-.. .+...||+....
T Consensus 348 arIlQIHsRKMnv--~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at---------------ev~heDfmegI~ 410 (424)
T KOG0652|consen 348 ARILQIHSRKMNV--SDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT---------------EVTHEDFMEGIL 410 (424)
T ss_pred HHHHHHhhhhcCC--CCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc---------------cccHHHHHHHHH
Confidence 999999987 432 27899999999999999999999999999999874321 344677777655
Q ss_pred hhh
Q 000858 913 ESK 915 (1251)
Q Consensus 913 eik 915 (1251)
++.
T Consensus 411 eVq 413 (424)
T KOG0652|consen 411 EVQ 413 (424)
T ss_pred HHH
Confidence 543
No 86
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.48 E-value=1.4e-12 Score=146.88 Aligned_cols=212 Identities=24% Similarity=0.389 Sum_probs=142.2
Q ss_pred CCCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecc
Q 000858 945 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMS 1018 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~---L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~---fi~V~~s 1018 (1251)
..+++|++|++.+..+ |+.++.+ . ....++||||||||||+||+.|+.....+ ||.++..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq----------~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ----------N----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc----------C----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 4577888888776543 4444432 2 23589999999999999999999988665 7777653
Q ss_pred cccccccCchHHHHHHHHHHHHhc-----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEE
Q 000858 1019 SITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1251)
Q Consensus 1019 ~L~s~~~G~se~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVI 1093 (1251)
. ...+.++.+|+.+++. ...|||||||+++ +..++ ..|+-.+ +++.|++|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQQ-------D~fLP~V------E~G~I~lI 254 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQQ-------DTFLPHV------ENGDITLI 254 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhhh-------hccccee------ccCceEEE
Confidence 3 2345789999998754 3589999999987 21111 2343332 34678888
Q ss_pred Eec--CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----c----cc------CChhcHHHHHHHcCCCcHHH
Q 000858 1094 AAT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----E----EL------ASDVDLEGIANMADGYSGSD 1157 (1251)
Q Consensus 1094 aTT--N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k----~----~l------~~dvdl~~LA~~T~GySgaD 1157 (1251)
++| |+.+.|+.++++|+ +++.+.....+.-..||..-+.- . .+ .++..++.|+..++|-....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 877 77789999999999 67888888888888888875542 1 11 13344788999999887766
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000858 1158 LKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1219 (1251)
Q Consensus 1158 L~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~ 1219 (1251)
|..|-..+.+...|. .......|+.+|++++++.-..-+
T Consensus 334 LN~Lems~~m~~tr~-----------------------g~~~~~~lSidDvke~lq~s~~~Y 372 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRS-----------------------GQSSRVLLSIDDVKEGLQRSHILY 372 (554)
T ss_pred HHHHHHHHHHHHhhc-----------------------CCcccceecHHHHHHHHhhcccee
Confidence 655532222211111 001224688888888887654333
No 87
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.48 E-value=5.3e-13 Score=171.11 Aligned_cols=184 Identities=22% Similarity=0.349 Sum_probs=140.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V~ 1016 (1251)
.++.++|.++.++.+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 567899999999999887752 233589999999999999999999886 47899999
Q ss_pred ccccc--ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEE
Q 000858 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1251)
Q Consensus 1017 ~s~L~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIa 1094 (1251)
+..+. ..|.|+.+..++.+|..+....+.||||||||.|++.....+.... ..++... + .++.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~-a~lLkp~---l------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA-ANILKPA---L------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH-HHHhHHH---H------hCCCcEEEE
Confidence 88776 4678889999999999998888899999999999876544332211 1222211 1 236789999
Q ss_pred ecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh----ccc-CChhcHHHHHHHcCCCcH
Q 000858 1095 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1095 TTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k----~~l-~~dvdl~~LA~~T~GySg 1155 (1251)
+|+..+ ..++++.+||. .+.+..|+.++...|++.+... ..+ .++..+..++.++.+|.+
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 998653 57899999995 6889999999999999876543 222 245567788888887754
No 88
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.1e-14 Score=151.77 Aligned_cols=127 Identities=22% Similarity=0.332 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCccccc
Q 000858 688 LAINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEK 753 (1251)
Q Consensus 688 ~~~~~l~evl~ses~~~P~Ilf~~die~~l~---------~~~~~~~~l~~~L~~L-----~g~VvvIgs~~~~d~~k~k 753 (1251)
+.+.+||+++.. ....||||++||. +. +.++.-....+.+.+| +||+-|+-|||
T Consensus 257 rmvrelf~mart---kkaciiffdeida-iggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatn-------- 324 (435)
T KOG0729|consen 257 RMVRELFEMART---KKACIIFFDEIDA-IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN-------- 324 (435)
T ss_pred HHHHHHHHHhcc---cceEEEEeecccc-ccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC--------
Confidence 348899999988 9999999999999 44 3455544444444444 57999999999
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhh
Q 000858 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1251)
Q Consensus 754 ~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 831 (1251)
+||.+|| ||+| |++|.++|.|||++
T Consensus 325 ----------------------rpdtldp-------------------------------allrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 325 ----------------------RPDTLDP-------------------------------ALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred ----------------------CCCCcCH-------------------------------hhcCCcccccceeccCCccc
Confidence 7777887 9999 99999999999999
Q ss_pred cccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000858 832 GQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1251)
Q Consensus 832 gR~~Il~IhT~-l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~ 881 (1251)
||.+|++||++ |.-. .+.-.+-||.++.+-+||+|+.+|++|--+|+.
T Consensus 352 grt~i~kihaksmsve--rdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 352 GRTHIFKIHAKSMSVE--RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred ccceeEEEeccccccc--cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 99999999997 4321 344567799999999999999999999999986
No 89
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-13 Score=166.94 Aligned_cols=129 Identities=21% Similarity=0.401 Sum_probs=105.0
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc---------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCC
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLTG---------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSH 755 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilf~~die~~l~~---------~---~~~~~~l~~~L~~L~--g~VvvIgs~~~~d~~k~k~~ 755 (1251)
++.||+=... +.|.|||||+||. +.+ | +|..+.+...++.+. .+||||+|||
T Consensus 231 VRdLF~qAkk---~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTN---------- 296 (596)
T COG0465 231 VRDLFEQAKK---NAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATN---------- 296 (596)
T ss_pred HHHHHHHhhc---cCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCC----------
Confidence 4455554444 9999999999999 652 2 245555666666665 3899999999
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcc
Q 000858 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 833 (1251)
Q Consensus 756 ~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR 833 (1251)
+||-.|+ ||+| ||+||+..++||+++|
T Consensus 297 --------------------RpdVlD~-------------------------------ALlRpgRFDRqI~V~~PDi~gR 325 (596)
T COG0465 297 --------------------RPDVLDP-------------------------------ALLRPGRFDRQILVELPDIKGR 325 (596)
T ss_pred --------------------CcccchH-------------------------------hhcCCCCcceeeecCCcchhhH
Confidence 5666665 9999 9999999999999999
Q ss_pred cchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccC
Q 000858 834 SNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 885 (1251)
Q Consensus 834 ~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~ 885 (1251)
.+|+++|. +.-++ +++++..+|..|.||+||+++.++.+|+++|.++...
T Consensus 326 e~IlkvH~--~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 326 EQILKVHA--KNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred HHHHHHHh--hcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 99999995 44444 8999999999999999999999999999999885543
No 90
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.47 E-value=4e-13 Score=157.27 Aligned_cols=178 Identities=24% Similarity=0.379 Sum_probs=129.5
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccC-ch
Q 000858 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-EG 1028 (1251)
Q Consensus 951 I~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s-~~~G-~s 1028 (1251)
|+|++++++.+..++.....+..+.....-..++++|||+||||||||++|+++|..++.+|+.+++..+.. .|.| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999998887754343322211111234589999999999999999999999999999999987763 6777 45
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 000858 1029 EKYVKAVFSLAS-------------------------------------------------------------------- 1040 (1251)
Q Consensus 1029 e~~I~~lF~~A~-------------------------------------------------------------------- 1040 (1251)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 666666666550
Q ss_pred -----------------------------------------------------------------------hcCCceEEE
Q 000858 1041 -----------------------------------------------------------------------KIAPSVVFV 1049 (1251)
Q Consensus 1041 -----------------------------------------------------------------------k~~PsILfI 1049 (1251)
..+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 124579999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhHHhhccCCcc------cCCccEEEEEec----CCCCCCcHHHHhcccccccCCCC
Q 000858 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 1119 (1251)
Q Consensus 1050 DEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~l~lP 1119 (1251)
||||.++.+..+.+....-.-+.+.|+..++|-.. -+..++++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986542222111222356677777766321 123689999886 35778889999999999999999
Q ss_pred CHHHHHHHH
Q 000858 1120 DAPNREKII 1128 (1251)
Q Consensus 1120 d~eeR~eIL 1128 (1251)
+.++-..||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999988887
No 91
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=4.4e-13 Score=171.97 Aligned_cols=183 Identities=22% Similarity=0.363 Sum_probs=135.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V 1015 (1251)
-.+++++|.+.....+.+.+.. +...++||+||||+|||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3577899999987777776642 122579999999999999999999987 7888999
Q ss_pred eccccc--ccccCchHHHHHHHHHHHHh-cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEE
Q 000858 1016 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1251)
Q Consensus 1016 ~~s~L~--s~~~G~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlV 1092 (1251)
++..+. .++.|+.+..++.+|..+.+ ..+.||||||||.|.+.+...+..... .++... + .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~-~~lkp~---l------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG-NMLKPA---L------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH-HHhcch---h------hcCCCeE
Confidence 888765 45778889999999988654 467899999999998765443332222 222211 1 2367999
Q ss_pred EEecCCCC-----CCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCC
Q 000858 1093 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1153 (1251)
Q Consensus 1093 IaTTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-----~dvdl~~LA~~T~Gy 1153 (1251)
||+|+..+ .+|+++.|||. .|.+..|+.+++..|++.+....... .+..+...+.++.+|
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 99998765 58999999996 68899999999999999887653322 334444554555544
No 92
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=8e-13 Score=169.95 Aligned_cols=185 Identities=21% Similarity=0.360 Sum_probs=138.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V 1015 (1251)
-.++.++|.+.....+.+.+.. +...++||+||||+|||++++++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3567899999987777776642 123578999999999999999999886 6788888
Q ss_pred eccccc--ccccCchHHHHHHHHHHHHhc-CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEE
Q 000858 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1251)
Q Consensus 1016 ~~s~L~--s~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlV 1092 (1251)
+...+. ..|.|+.+..++.+|..+.+. .+.||||||||.|++.+...+.... .+.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDA----GNMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHH----HHHhchhh------hcCceEE
Confidence 887765 457788899999999998764 5899999999999865433222222 22222211 2367999
Q ss_pred EEecCCC-----CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCCcH
Q 000858 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-----~dvdl~~LA~~T~GySg 1155 (1251)
|++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+....... .+..+..++..+.+|..
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 9999865 468999999995 68899999999999999887764432 44557777777777643
No 93
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=9e-13 Score=162.43 Aligned_cols=185 Identities=21% Similarity=0.234 Sum_probs=134.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999998752 2234568999999999999999999998652
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
+++++... ..+...++.+++.+... ...||||||+|.|- ....+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHH
Confidence 23333221 11223456666655422 23699999999882 12234455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..|+.. ..++.||++||.++.|.+.+++|+ ..|.|..++.++..++|+.++..+++. ++..+..|++..+|- .
T Consensus 141 KtLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-m 214 (830)
T PRK07003 141 KTLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-M 214 (830)
T ss_pred HHHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 554432 356889999999999999999999 789999999999999999999887654 556688889998885 4
Q ss_pred HHHHHHHHHHH
Q 000858 1156 SDLKNLCVTAA 1166 (1251)
Q Consensus 1156 aDL~~L~~~Aa 1166 (1251)
++..+++..+.
T Consensus 215 RdALsLLdQAi 225 (830)
T PRK07003 215 RDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 94
>CHL00176 ftsH cell division protein; Validated
Probab=99.46 E-value=1.6e-13 Score=170.18 Aligned_cols=219 Identities=20% Similarity=0.295 Sum_probs=157.1
Q ss_pred ccCCCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 000858 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1251)
Q Consensus 443 i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 522 (1251)
+....+..++|+++.-+ +..|.-|.+... .|++++. |..-=....+.|||.||+| ..+.+||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCe
Confidence 33456778999998887 888888888765 4777654 3332234457799999999 799999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCC
Q 000858 523 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 602 (1251)
Q Consensus 523 L~lDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 602 (1251)
+.++.+.+..
T Consensus 245 i~is~s~f~~---------------------------------------------------------------------- 254 (638)
T CHL00176 245 FSISGSEFVE---------------------------------------------------------------------- 254 (638)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6655322100
Q ss_pred CeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCc
Q 000858 603 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 682 (1251)
Q Consensus 603 drv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~ 682 (1251)
.|+|.
T Consensus 255 ---~~~g~------------------------------------------------------------------------ 259 (638)
T CHL00176 255 ---MFVGV------------------------------------------------------------------------ 259 (638)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChh---hHHHHHHHHhcCC--CCEEEEeeccCCCc
Q 000858 683 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNND---AYGALKSKLENLP--SNVVVIGSHTQLDS 749 (1251)
Q Consensus 683 ~~~~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~--------~~~~---~~~~l~~~L~~L~--g~VvvIgs~~~~d~ 749 (1251)
..-.++.+|+.+.. ..|.||||||+|.+.. ++.+ ..+.|...++.+. .+|+|||+||
T Consensus 260 ---~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN---- 329 (638)
T CHL00176 260 ---GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATN---- 329 (638)
T ss_pred ---hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecC----
Confidence 00014555655544 8899999999999642 1222 2333333334332 3899999999
Q ss_pred ccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhh
Q 000858 750 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 827 (1251)
Q Consensus 750 ~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~L 827 (1251)
.|+.+|+ ||+| ||++++++++
T Consensus 330 --------------------------~~~~LD~-------------------------------ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 330 --------------------------RVDILDA-------------------------------ALLRPGRFDRQITVSL 352 (638)
T ss_pred --------------------------chHhhhh-------------------------------hhhccccCceEEEECC
Confidence 3444454 8888 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000858 828 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1251)
Q Consensus 828 pd~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r 882 (1251)
|+.+.|.+|++.|.+. ..+ +++++..||..+.||+|+||+.+|++|+..+..+
T Consensus 353 Pd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 353 PDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999654 333 6789999999999999999999999999887653
No 95
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.1e-12 Score=149.98 Aligned_cols=186 Identities=21% Similarity=0.252 Sum_probs=132.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2234568999999999999999999998642
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.++... ...-..++.+...+... ...|+||||+|.+- ....+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 12222110 01223466666554422 23599999999882 12234455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+.+|.+|+.++.+.+++++|+ ..+.+.+|+.++..++++..+...+.. ++..++.++..+.| +.
T Consensus 141 k~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 554432 245677777787888999999998 689999999999999999988886643 55667888888876 56
Q ss_pred HHHHHHHHHHHh
Q 000858 1156 SDLKNLCVTAAH 1167 (1251)
Q Consensus 1156 aDL~~L~~~Aa~ 1167 (1251)
+++.++++.++.
T Consensus 215 R~al~~l~~~~~ 226 (363)
T PRK14961 215 RDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHH
Confidence 677777766643
No 96
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.45 E-value=3.1e-12 Score=152.42 Aligned_cols=181 Identities=24% Similarity=0.422 Sum_probs=128.2
Q ss_pred CCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 946 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~---L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
.+|++++|++.+... |.+.+.. . ...++||+||||||||+||++||+.++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999998666 7776642 1 22479999999999999999999999999999987532
Q ss_pred cccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEec--
Q 000858 1023 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1096 (1251)
Q Consensus 1023 ~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTT-- 1096 (1251)
....++.++..+.. ....||||||||.+. ... .+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~~-------q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KAQ-------QDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HHH-------HHHHHHHhhc------CcEEEEEeCCC
Confidence 22345666666542 245899999999872 111 1223333322 346666654
Q ss_pred CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc--cc--CChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000858 1097 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1097 N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~--~l--~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~ 1167 (1251)
|....+++++++|+ .++.+..++.++...+++..+... .+ .++..++.|+..+.| ..+.+.++++.++.
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44568999999999 789999999999999999887652 11 244457778888755 45666666666643
No 97
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.1e-12 Score=157.73 Aligned_cols=174 Identities=20% Similarity=0.314 Sum_probs=125.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------cc
Q 000858 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TS 1022 (1251)
Q Consensus 949 ddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L------~s 1022 (1251)
+|=.|++++|+.+.|++.-- +..-....+-+.|+||||+|||++++.||..+|..|++++..-+ .+
T Consensus 411 eDHYgm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 46789999999999988641 11112222348999999999999999999999999999986443 22
Q ss_pred ---cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHH-----hHHhhccCCcccCCccEEEEE
Q 000858 1023 ---KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLA 1094 (1251)
Q Consensus 1023 ---~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~-----~LL~~ldgl~~k~~~~VlVIa 1094 (1251)
.|+|.+...+-+......-.. -+++|||||.+.. ........++..++. .|+.+.-.++. +-.+|++||
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~N-PliLiDEvDKlG~-g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTEN-PLILIDEVDKLGS-GHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCC-ceEEeehhhhhCC-CCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 377777777766666665544 4889999999962 111122233333331 23322222222 236899999
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000858 1095 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1095 TTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
|+|..+.+++.++.|+ .+|.++=...++..+|.+.|+-.
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 9999999999999999 68999999999999999988754
No 98
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.2e-12 Score=161.67 Aligned_cols=191 Identities=21% Similarity=0.200 Sum_probs=132.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EEe-
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NIS- 1016 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi-------~V~- 1016 (1251)
..+|++|+|++.+++.|+.++.. + +.+..+||+||+|||||++|+++|+.+++.-. .|+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~----------~---rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ----------Q---RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh----------C---CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 46899999999999999988762 1 23345799999999999999999999976410 010
Q ss_pred ccccccc------cc----CchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCC
Q 000858 1017 MSSITSK------WF----GEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1251)
Q Consensus 1017 ~s~L~s~------~~----G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl 1082 (1251)
|-.+... .+ ...-..++.+...+.. ....|+||||+|.| + ...++.|+..|+.
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----T-------~eAqNALLKtLEE- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----S-------RSSFNALLKTLEE- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----C-------HHHHHHHHHHHhc-
Confidence 0000000 00 0122345555554432 22369999999998 2 2344556666554
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHH
Q 000858 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1161 (1251)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L 1161 (1251)
....+++|++|+.+..|.+.+++|+ .++.|..++.++..++|+.++..+.+. .+..+..|+..+.|. .+++.++
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~R~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-MRDALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 2356778888888888999999998 789999999999999999988876543 455678888888874 5566666
Q ss_pred HHHHH
Q 000858 1162 CVTAA 1166 (1251)
Q Consensus 1162 ~~~Aa 1166 (1251)
|..+.
T Consensus 221 LdQal 225 (944)
T PRK14949 221 TDQAI 225 (944)
T ss_pred HHHHH
Confidence 65443
No 99
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=2.4e-12 Score=152.73 Aligned_cols=226 Identities=21% Similarity=0.300 Sum_probs=135.4
Q ss_pred CCccc-ccCcHHHHHHHHHHHHcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 946 VTFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 946 ~tfdd-I~Gle~vk~~L~e~V~~pl~~pelf~k--~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
..+++ |+|++.+++.|...+..++.+-..... .....+..++||+||||||||++|+++|..++.+|+.+++..+..
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 34443 899999999998877654333211100 012234468999999999999999999999999999999988753
Q ss_pred -cccCch-HHHHHHHHHH----HHhcCCceEEEccccccccCCCCCch--HHHHHHHHHhHHhhccCCc---------cc
Q 000858 1023 -KWFGEG-EKYVKAVFSL----ASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLR---------TK 1085 (1251)
Q Consensus 1023 -~~~G~s-e~~I~~lF~~----A~k~~PsILfIDEID~L~~~r~~~~~--~e~~~~il~~LL~~ldgl~---------~k 1085 (1251)
.|+|.. +..+..++.. ..+..++||||||||.+...+.++.. ......+.+.|+..|++-. ..
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 567764 3344555443 23456799999999999755332210 0001124445555554321 11
Q ss_pred CCccEEEEEecCCCC----------------------------------------------------CCcHHHHhccccc
Q 000858 1086 DKERVLVLAATNRPF----------------------------------------------------DLDEAVVRRLPRR 1113 (1251)
Q Consensus 1086 ~~~~VlVIaTTN~p~----------------------------------------------------~Ld~aLlrRF~~~ 1113 (1251)
+..+.++|.|+|..+ -+.|+|+.|++.+
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~i 306 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVV 306 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCee
Confidence 123455555555411 0356677788888
Q ss_pred ccCCCCCHHHHHHHHHH----HHhh-------ccc---CChhcHHHHHHH--cCCCcHHHHHHHHHHHHhhhhH
Q 000858 1114 LMVNLPDAPNREKIIRV----ILAK-------EEL---ASDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1114 I~l~lPd~eeR~eIL~~----ll~k-------~~l---~~dvdl~~LA~~--T~GySgaDL~~L~~~Aa~~air 1171 (1251)
+.|...+.++..+|+.. ++++ .++ .++..++.|++. ..++-.+.|+.+++......+.
T Consensus 307 v~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 307 ATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 88888898888888862 3322 111 133335556654 2344445555555554444333
No 100
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.6e-12 Score=157.11 Aligned_cols=185 Identities=23% Similarity=0.242 Sum_probs=134.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999998762 233467899999999999999999999875
Q ss_pred ----------cEEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1011 ----------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
.++.++.+.- ..-..++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 2334443211 123345666554432 234699999999882 12334455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. ...+.+|++|+.+..+...+++|+ .++.|..++.++..++++.++.++++. ++..+..|+..+.| +.
T Consensus 140 KtLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555432 245677778888888889999998 689999999999999999999887654 55567888888877 56
Q ss_pred HHHHHHHHHHH
Q 000858 1156 SDLKNLCVTAA 1166 (1251)
Q Consensus 1156 aDL~~L~~~Aa 1166 (1251)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 67666665554
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.3e-12 Score=155.45 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=136.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999998863 2234568999999999999999999999653
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.++.+. ...-..++.+...+... .-.|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHH
Confidence 44444321 12233456665554322 23599999999882 12344555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...++.++.++++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555542 245777777888888988999998 678899999999889999998887654 45567788888876 67
Q ss_pred HHHHHHHHHHHhh
Q 000858 1156 SDLKNLCVTAAHC 1168 (1251)
Q Consensus 1156 aDL~~L~~~Aa~~ 1168 (1251)
+++.+++..+...
T Consensus 215 R~al~lLdq~ia~ 227 (509)
T PRK14958 215 RDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHhc
Confidence 7888888766543
No 102
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.6e-12 Score=157.58 Aligned_cols=185 Identities=23% Similarity=0.275 Sum_probs=132.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|...+.. .+-+..+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 46899999999999999988763 2233458999999999999999999998763
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.++... ...-..++.+...+.. ....|+||||+|.| + ....+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----s-------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----S-------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----C-------HHHHHHHH
Confidence 23333221 0122345555554432 23359999999988 2 23445565
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++. ....+++|.+|+.+..|.+.+++|+ ..+.|..++.++-...|+.++..+++. ++..+..|+..++|. .
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs-~ 214 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS-M 214 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 55554 2356788888888899999999997 789999999999999999988776654 445677888888875 5
Q ss_pred HHHHHHHHHHH
Q 000858 1156 SDLKNLCVTAA 1166 (1251)
Q Consensus 1156 aDL~~L~~~Aa 1166 (1251)
++..+++..|.
T Consensus 215 R~Al~lldqai 225 (647)
T PRK07994 215 RDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 103
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=1.2e-11 Score=144.07 Aligned_cols=202 Identities=18% Similarity=0.227 Sum_probs=128.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 000858 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 1019 (1251)
Q Consensus 949 ddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg---------~~fi~V~~s~ 1019 (1251)
+++.|.++.++.|...+...+. + ..+..++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4789999999999887753111 1 1235799999999999999999988762 5788889865
Q ss_pred cccc----------cc--C--------chHHHHHHHHHHHHh-cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhh
Q 000858 1020 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1251)
Q Consensus 1020 L~s~----------~~--G--------~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ 1078 (1251)
..+. .. + ........++..... ..+.||+|||+|.|.... + .++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~----~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----D----DLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----c----HHHHhHhcc
Confidence 3221 10 1 112234445554433 346799999999996211 1 133344333
Q ss_pred ccCCcccCCccEEEEEecCCCC---CCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhh---cccCChhcHHHHHH---
Q 000858 1079 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIAN--- 1148 (1251)
Q Consensus 1079 ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~k---~~l~~dvdl~~LA~--- 1148 (1251)
+.. ....+.++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++..+.. ....++..++.++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236789999998875 57788888885 57899999999999999998863 11223333344443
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhH
Q 000858 1149 MADGYSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1149 ~T~GySgaDL~~L~~~Aa~~air 1171 (1251)
.+.|. .+.+.++|..|+..+..
T Consensus 235 ~~~Gd-~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGD-ARKAIDLLRVAGEIAER 256 (365)
T ss_pred HhcCC-HHHHHHHHHHHHHHHHH
Confidence 34454 34445677777665544
No 104
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=2.1e-12 Score=151.29 Aligned_cols=179 Identities=22% Similarity=0.358 Sum_probs=129.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccC-c
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1027 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s-~~~G-~ 1027 (1251)
.|+|++++++.+..++....++..+.........+.+|||+||||+|||+||++||..++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998888643333222111111123578999999999999999999999999999999987774 6777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 000858 1028 GEKYVKAVFSLAS------------------------------------------------------------------- 1040 (1251)
Q Consensus 1028 se~~I~~lF~~A~------------------------------------------------------------------- 1040 (1251)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4666666666661
Q ss_pred -----------------------------------------------------------------------hcCCceEEE
Q 000858 1041 -----------------------------------------------------------------------KIAPSVVFV 1049 (1251)
Q Consensus 1041 -----------------------------------------------------------------------k~~PsILfI 1049 (1251)
...-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013479999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhHHhhccCCccc------CCccEEEEEec----CCCCCCcHHHHhcccccccCCCC
Q 000858 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 1119 (1251)
Q Consensus 1050 DEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~l~lP 1119 (1251)
||||.++....+.+......-+.+.|+..++|-... +..++++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999866432221122233666777777763211 23689999886 45778889999999999999999
Q ss_pred CHHHHHHHH
Q 000858 1120 DAPNREKII 1128 (1251)
Q Consensus 1120 d~eeR~eIL 1128 (1251)
+.++-.+||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999988887
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=7.1e-12 Score=150.87 Aligned_cols=169 Identities=19% Similarity=0.287 Sum_probs=113.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1059 (1251)
+.++||||+|+|||+|++++++++ +..++.+++.++...+..........-|....+ .+.+|+||||+.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 566888888777654433221111122332222 46899999999884322
Q ss_pred CCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhh
Q 000858 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1060 ~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
..++.+..+++.+... ...+||+++..|.. +++.+.+||. ..+.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~~---------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHEA---------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHHC---------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1223333444443321 23456666666554 6788999995 47889999999999999999887
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000858 1135 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1135 ~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~ 1167 (1251)
..+. ++..++.||....| +.++|..++.....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 5543 55668888888775 56666666655543
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.41 E-value=6.9e-13 Score=155.40 Aligned_cols=127 Identities=24% Similarity=0.398 Sum_probs=95.2
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--------Chh---hHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCC
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHP 756 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilf~~die~~l~~--------~~~---~~~~l~~~L~~L--~g~VvvIgs~~~~d~~k~k~~~ 756 (1251)
+..+|+.+.. ..|.||||||+|.++.. ..+ ....+-..++.+ .++|+||+++|+
T Consensus 204 i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~---------- 270 (364)
T TIGR01242 204 VREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR---------- 270 (364)
T ss_pred HHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC----------
Confidence 4556665544 78999999999996542 111 222233334444 358999999993
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhccc
Q 000858 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1251)
Q Consensus 757 ~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1251)
|+.+|+ +++| ||++.+++++|+...|.
T Consensus 271 --------------------~~~ld~-------------------------------al~r~grfd~~i~v~~P~~~~r~ 299 (364)
T TIGR01242 271 --------------------PDILDP-------------------------------ALLRPGRFDRIIEVPLPDFEGRL 299 (364)
T ss_pred --------------------hhhCCh-------------------------------hhcCcccCceEEEeCCcCHHHHH
Confidence 344444 7777 89999999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000858 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1251)
Q Consensus 835 ~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r 882 (1251)
+|+++|+. ...+ .+.+++.|+..+.||+|+||+.+|++|..+|+.+
T Consensus 300 ~Il~~~~~--~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 300 EILKIHTR--KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHh--cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999974 2233 4578999999999999999999999999999874
No 107
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.41 E-value=7e-13 Score=165.69 Aligned_cols=127 Identities=17% Similarity=0.339 Sum_probs=99.3
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCCC--CEEEEeeccCCCcccccCCC
Q 000858 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHP 756 (1251)
Q Consensus 690 ~~~l~evl~ses~~~P~Ilf~~die~~l~~--------~---~~~~~~l~~~L~~L~g--~VvvIgs~~~~d~~k~k~~~ 756 (1251)
+..+|+.+.. ..|.||||||+|.+..+ + .+..+.+-..++.+.+ .|||||+||
T Consensus 233 ~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN----------- 298 (644)
T PRK10733 233 VRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN----------- 298 (644)
T ss_pred HHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecC-----------
Confidence 4455555443 78999999999996431 1 1234444444555543 799999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhccc
Q 000858 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1251)
Q Consensus 757 ~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1251)
+||.+|+ |++| ||++++++++|+.++|.
T Consensus 299 -------------------~p~~lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~ 328 (644)
T PRK10733 299 -------------------RPDVLDP-------------------------------ALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred -------------------ChhhcCH-------------------------------HHhCCcccceEEEcCCCCHHHHH
Confidence 5666776 9998 99999999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000858 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1251)
Q Consensus 835 ~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r 882 (1251)
.|++.|. ...++ .++++..||..|.||+|+||+.+|++|+..|.+.
T Consensus 329 ~Il~~~~--~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 329 QILKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred HHHHHHh--hcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999995 33344 6788999999999999999999999999998763
No 108
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=8.6e-12 Score=151.22 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=136.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f------------ 1012 (1251)
..+|+|++|++.+.+.|...+.. .+.+.++||+||+|||||++|+++|+.+++..
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887652 23446899999999999999999999986521
Q ss_pred ----------------EEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHH
Q 000858 1013 ----------------INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 1072 (1251)
Q Consensus 1013 ----------------i~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il 1072 (1251)
+.++.. .......++.+++.+... ...|+||||+|.|- ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 112211 112345677777776533 23699999999882 1233
Q ss_pred HhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcC
Q 000858 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1151 (1251)
Q Consensus 1073 ~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~ 1151 (1251)
+.|+..++. ....+++|++|+.++.+.+++++|+ .++.|..++.++...+++..+.+++.. ++..+..|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 445555443 2356777777888889999999998 678899999999999999999887754 4455788998888
Q ss_pred CCcHHHHHHHHHHHHh
Q 000858 1152 GYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1152 GySgaDL~~L~~~Aa~ 1167 (1251)
| +.+++.++++.++.
T Consensus 221 G-slR~al~~Ldkai~ 235 (507)
T PRK06645 221 G-SARDAVSILDQAAS 235 (507)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 56777777666643
No 109
>PRK04195 replication factor C large subunit; Provisional
Probab=99.40 E-value=5.1e-12 Score=153.39 Aligned_cols=186 Identities=25% Similarity=0.367 Sum_probs=130.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
..+|++|+|.+.+++.|..++.... + ..+++++||+||||+|||++|+++|++++++++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 4679999999999999999886311 1 234678999999999999999999999999999999876432
Q ss_pred cCchHHHHHHHHHHHHh------cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC
Q 000858 1025 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1098 (1251)
...+..+...+.. ..+.||+|||+|.|.+... .. .++.++..+.. .+..+|+++|.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~----~~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RG----GARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hh----HHHHHHHHHHc------CCCCEEEeccC
Confidence 1234444333322 2467999999999853211 11 12223333321 22346667888
Q ss_pred CCCCcH-HHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHH
Q 000858 1099 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1161 (1251)
Q Consensus 1099 p~~Ld~-aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L 1161 (1251)
+..+.. .+++|+ ..+.|+.|+.++...+++.++...++. ++..++.|+..+.|.....|..|
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 888877 555555 689999999999999999999886654 55668888888776444433333
No 110
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=1.4e-11 Score=145.15 Aligned_cols=202 Identities=16% Similarity=0.199 Sum_probs=129.6
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc
Q 000858 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 1022 (1251)
Q Consensus 948 fddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s 1022 (1251)
.+.+.|.++..+.|...+...+. ...+..++|+||||||||++++.+++++ ++.++.++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 34688999998988887753111 1123579999999999999999999877 57889999864321
Q ss_pred ----------cccC--------chHHHHHHHHHHHHh-cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCc
Q 000858 1023 ----------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1251)
Q Consensus 1023 ----------~~~G--------~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~ 1083 (1251)
...+ .....+..++..... ..+.||+|||+|.+..... ..++..++..+....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~--------~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG--------NDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC--------chHHHHHHHhhhccC
Confidence 1111 112333444444333 3457999999999862111 123444444443332
Q ss_pred ccCCccEEEEEecCCC---CCCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhc---ccCChhcHHHHHHHcCCCc--
Q 000858 1084 TKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS-- 1154 (1251)
Q Consensus 1084 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~k~---~l~~dvdl~~LA~~T~GyS-- 1154 (1251)
..++.+|+++|.. +.+++.+.+||. ..+.+++++.++..+|++..+... ...++..++.+++.+.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2368888888765 357788887774 568999999999999999887642 1234455677777774322
Q ss_pred HHHHHHHHHHHHhhhh
Q 000858 1155 GSDLKNLCVTAAHCPI 1170 (1251)
Q Consensus 1155 gaDL~~L~~~Aa~~ai 1170 (1251)
.+.+..+|..|+..+.
T Consensus 248 ~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 248 ARVAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444466666665443
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.1e-12 Score=154.58 Aligned_cols=186 Identities=23% Similarity=0.264 Sum_probs=136.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f------------ 1012 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999998763 23456799999999999999999999986531
Q ss_pred ------------EEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1013 ------------INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1013 ------------i~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
+.++.+ .......++.++..+... ...||||||+|.|- ....+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 222211 112234567776655322 23699999999871 12334555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. ...+.+|++|+.+..+...+++|+ ..+.|..++.++-..+++.++.++++. ++..+..|++.+.| +.
T Consensus 141 KtLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 555432 255778888888899999999998 678899999999999999999987654 45567888888865 57
Q ss_pred HHHHHHHHHHHh
Q 000858 1156 SDLKNLCVTAAH 1167 (1251)
Q Consensus 1156 aDL~~L~~~Aa~ 1167 (1251)
+++.+++..+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
No 112
>PLN03025 replication factor C subunit; Provisional
Probab=99.39 E-value=7.5e-12 Score=144.22 Aligned_cols=182 Identities=23% Similarity=0.248 Sum_probs=124.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg-----~~fi~V~~s~ 1019 (1251)
..+|+++.|.+++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999999887652 1 123799999999999999999999972 2356666654
Q ss_pred ccccccCchHHHHHHHHHHH-Hh------cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEE
Q 000858 1020 ITSKWFGEGEKYVKAVFSLA-SK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1251)
Q Consensus 1020 L~s~~~G~se~~I~~lF~~A-~k------~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlV 1092 (1251)
..+ ...++...... .. ....||+|||+|.|. ...+..+.+ .++.. .....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~-------~lE~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRR-------TMEIY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHH-------HHhcc----cCCceE
Confidence 321 12333332221 11 234799999999982 222223322 22221 133557
Q ss_pred EEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000858 1093 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1251)
Q Consensus 1093 IaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~ 1164 (1251)
|.++|....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..++.|+....| ..+.+.+.++.
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~ 203 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQA 203 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 778888888989999998 589999999999999999998887654 55667888887766 34444444443
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.39 E-value=6.9e-12 Score=148.98 Aligned_cols=170 Identities=20% Similarity=0.290 Sum_probs=112.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1059 (1251)
..++||||+|+|||+|++++++++ +..++.+++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 469999999999999999999887 577888988776544322111101112222222 35799999999885322
Q ss_pred CCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC---CcHHHHhcccc--cccCCCCCHHHHHHHHHHHHhh
Q 000858 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1060 ~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~~--~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
..++.+..+++.+.. . ...+||+++..|.. +++.+++||.. .+.+..|+.++|..|++..+..
T Consensus 216 ---~~~~~l~~~~n~~~~-------~--~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALHE-------N--GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHHH-------C--CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 122333334443321 1 23455655555543 56788899964 6899999999999999999987
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000858 1135 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1251)
Q Consensus 1135 ~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~ 1168 (1251)
..+. ++..++.||....+ +.++|..++......
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 6554 56668888988765 567777666655433
No 114
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.6e-12 Score=149.91 Aligned_cols=186 Identities=21% Similarity=0.234 Sum_probs=137.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|+|++|++.+.+.|...+.. .+.+.++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999887753 234568999999999999999999997643
Q ss_pred ----------cEEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1011 ----------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
.++.+++++- .+-..++.+.+.+... ...|++|||+|.|- ...++.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3345554321 1234577777666433 23599999999882 12345566
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++..+.++++. ++..++.|++.+.| +.
T Consensus 138 K~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 665542 255777778888888999999998 678999999999999999999887654 55667888888876 66
Q ss_pred HHHHHHHHHHHh
Q 000858 1156 SDLKNLCVTAAH 1167 (1251)
Q Consensus 1156 aDL~~L~~~Aa~ 1167 (1251)
+++.+++..++.
T Consensus 212 R~alslLdqli~ 223 (491)
T PRK14964 212 RNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHH
Confidence 677777766653
No 115
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8.1e-12 Score=151.47 Aligned_cols=172 Identities=23% Similarity=0.326 Sum_probs=126.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------cc-
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TS- 1022 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L------~s- 1022 (1251)
|=.|++++|+.+.+++....... .+ ...-++|+||||+|||+|++.||+.+|..|++++..-+ .+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~------~~--kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK------KL--KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc------cC--CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 56899999999999886422211 11 11248999999999999999999999999999987543 22
Q ss_pred --cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHH-----hHHhhccCCcccCCccEEEEEe
Q 000858 1023 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 1095 (1251)
Q Consensus 1023 --~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~-----~LL~~ldgl~~k~~~~VlVIaT 1095 (1251)
.|+|.....+-+-...|....| +++|||||.|... .......++..++. .|..+.-.+.. +-.+|+||+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 3788887777777788877664 8889999999532 22223334444332 23322222221 2367999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000858 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1133 (1251)
Q Consensus 1096 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~ 1133 (1251)
+|..+.++..++.|+ .+|.+.-.+.++..+|.+.|+-
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 6899999999999999998773
No 116
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2e-11 Score=150.77 Aligned_cols=186 Identities=20% Similarity=0.245 Sum_probs=133.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|..++.. .+-+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 46899999999999999998763 2233568999999999999999999998652
Q ss_pred ----------------EEEEecccccccccCchHHHHHHHHHHHHhcC----CceEEEccccccccCCCCCchHHHHHHH
Q 000858 1012 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1251)
Q Consensus 1012 ----------------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~~~~i 1071 (1251)
++.++... ...-..++.+.+.+.... -.|++|||+|.|- ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22222211 112335666666554322 2599999999882 123
Q ss_pred HHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 000858 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1251)
Q Consensus 1072 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T 1150 (1251)
.+.|+..++. ....+.+|.+|+.+..+...+++|+ ..+.|..++.++..+.++..+.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4555555554 2356777777778888888999998 789999999999999999998887655 445578888888
Q ss_pred CCCcHHHHHHHHHHHHh
Q 000858 1151 DGYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1151 ~GySgaDL~~L~~~Aa~ 1167 (1251)
.| +.+++.+++..+..
T Consensus 216 ~G-slR~al~lLdq~ia 231 (618)
T PRK14951 216 RG-SMRDALSLTDQAIA 231 (618)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 87 66777777665543
No 117
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1.1e-11 Score=146.43 Aligned_cols=191 Identities=16% Similarity=0.231 Sum_probs=125.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------------
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 1013 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi------------- 1013 (1251)
.|++|+|++.+++.|+..+..+...+..+ + .+.+..+||+||+|+|||++|+++|..+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999997543322111 1 123467999999999999999999998755310
Q ss_pred --EEecccccc---cccCchHHHHHHHHHHHHhcC----CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcc
Q 000858 1014 --NISMSSITS---KWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1084 (1251)
Q Consensus 1014 --~V~~s~L~s---~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~ 1084 (1251)
.-+.+++.- ......-..++.++..+...+ ..|+||||+|.|- ....+.|+..++..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhcC--
Confidence 000011100 001112345788888776532 3599999999982 11234455555442
Q ss_pred cCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHH
Q 000858 1085 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 1162 (1251)
Q Consensus 1085 k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL~~L~ 1162 (1251)
..++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+++.. ...+ +......++..+.|..+..+..+.
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHHHhc
Confidence 234555555555899999999998 6899999999987777653 2233 344567888999998887665543
No 118
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2e-11 Score=149.02 Aligned_cols=186 Identities=23% Similarity=0.276 Sum_probs=130.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 46899999999999999987762 223456899999999999999999998864
Q ss_pred ----------cEEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1011 ----------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
.++.++... .. +-..++.+...+.. ....|+||||+|.| + ....+.|+
T Consensus 79 C~~i~~~~~~dlieidaas----~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----s-------~~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS----RT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----S-------KQSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeeccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----c-------HHHHHHHH
Confidence 223333211 11 12244555554432 23469999999988 2 12334555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+.+|++|+.+..+.+.+++|+ ..+.|..++.++-..+++..+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555442 245667777777888888899998 789999999999999999988876654 45557788888865 56
Q ss_pred HHHHHHHHHHHh
Q 000858 1156 SDLKNLCVTAAH 1167 (1251)
Q Consensus 1156 aDL~~L~~~Aa~ 1167 (1251)
+++.++++.++.
T Consensus 215 R~alnlLek~i~ 226 (546)
T PRK14957 215 RDALSLLDQAIS 226 (546)
T ss_pred HHHHHHHHHHHH
Confidence 666677766553
No 119
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.34 E-value=4e-11 Score=139.15 Aligned_cols=186 Identities=26% Similarity=0.338 Sum_probs=132.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++++|++.+++.|.+.+.. .+.+..+||+||||+|||++|+++++.+.+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2234579999999999999999999987432
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHhcC----CceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.++... ......++.++..+...+ ..||+|||+|.+- ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 23333221 112335677777665432 3599999999872 12334555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. ...+++|.+|+.++.+.+++++|+ ..+.+..|+.++..++++.++.+.++. ++..+..|+..+.| +.
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 555442 245777778888888888999998 578999999999999999998876653 44557778887766 55
Q ss_pred HHHHHHHHHHHh
Q 000858 1156 SDLKNLCVTAAH 1167 (1251)
Q Consensus 1156 aDL~~L~~~Aa~ 1167 (1251)
+.+.+.++.+..
T Consensus 213 ~~a~~~lekl~~ 224 (355)
T TIGR02397 213 RDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHHh
Confidence 666666665543
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.34 E-value=2.9e-11 Score=139.06 Aligned_cols=189 Identities=21% Similarity=0.244 Sum_probs=123.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg-----~~fi~V~~s~ 1019 (1251)
..+|++++|.+.+++.|..++.. . ...++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS----------P----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 45799999999999999887752 1 123799999999999999999999883 3567888766
Q ss_pred ccccc-------------cCc-------hHHHHHHHHHHHHhc-----CCceEEEccccccccCCCCCchHHHHHHHHHh
Q 000858 1020 ITSKW-------------FGE-------GEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1251)
Q Consensus 1020 L~s~~-------------~G~-------se~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~ 1074 (1251)
+.... .+. ....++.+....... .+.+|+|||+|.+- ...+ +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~-------~~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQ-------QA 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHH-------HH
Confidence 43211 010 112233333333222 24699999999872 1111 12
Q ss_pred HHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 000858 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1251)
Q Consensus 1075 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~Gy 1153 (1251)
+...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+.+.++. ++..++.|+..+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 222222221 22445556666667778888887 578899999999999999988876654 55667888887754
Q ss_pred cHHHHHHHHHHH
Q 000858 1154 SGSDLKNLCVTA 1165 (1251)
Q Consensus 1154 SgaDL~~L~~~A 1165 (1251)
+.+++.+.++.+
T Consensus 219 dlr~l~~~l~~~ 230 (337)
T PRK12402 219 DLRKAILTLQTA 230 (337)
T ss_pred CHHHHHHHHHHH
Confidence 444454444433
No 121
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.34 E-value=2e-11 Score=144.43 Aligned_cols=180 Identities=22% Similarity=0.334 Sum_probs=115.8
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccc
Q 000858 951 IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWF 1025 (1251)
Q Consensus 951 I~Gle~vk~~L~e~V~~pl~~pelf-~k---~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s-~~~ 1025 (1251)
++|++++++.+...+.....+-... .. .++.....+|||+||||||||++|+++|..++.+|+.+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 7999999999988775433322110 00 011112357999999999999999999999999999999887653 477
Q ss_pred Cch-HHHHHHHHHHH----HhcCCceEEEccccccccCCCCCchH-H-HHHHHHHhHHhhccCCcc---------cCCcc
Q 000858 1026 GEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEH-E-AMRKMKNEFMVNWDGLRT---------KDKER 1089 (1251)
Q Consensus 1026 G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~-e-~~~~il~~LL~~ldgl~~---------k~~~~ 1089 (1251)
|.. +..+..++..+ ....++||||||||.+..++.++... . ....+.+.|+..++|... .+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 44455544422 34467899999999997644332110 0 001244445555544321 12345
Q ss_pred EEEEEecCCCC--------------------------------------------------CCcHHHHhcccccccCCCC
Q 000858 1090 VLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRRLMVNLP 1119 (1251)
Q Consensus 1090 VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRF~~~I~l~lP 1119 (1251)
.++|.|+|-.+ -+.|+|+.|++.++.|.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 67787777510 0335666688888888888
Q ss_pred CHHHHHHHHHH
Q 000858 1120 DAPNREKIIRV 1130 (1251)
Q Consensus 1120 d~eeR~eIL~~ 1130 (1251)
+.++..+|+..
T Consensus 319 ~~~~L~~Il~~ 329 (413)
T TIGR00382 319 DEEALIAILTK 329 (413)
T ss_pred CHHHHHHHHHH
Confidence 88888888765
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.3e-11 Score=148.90 Aligned_cols=185 Identities=22% Similarity=0.266 Sum_probs=132.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999988763 2334568999999999999999999998652
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.++.+. ......++.+...+... ...|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222211 12234567777666432 23599999999882 12345566
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-.+.+...+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 665542 256777777777888888899998 789999999999999999888876654 44556778888776 45
Q ss_pred HHHHHHHHHHH
Q 000858 1156 SDLKNLCVTAA 1166 (1251)
Q Consensus 1156 aDL~~L~~~Aa 1166 (1251)
+++.+++..|.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 123
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.2e-11 Score=147.55 Aligned_cols=184 Identities=25% Similarity=0.328 Sum_probs=133.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|++++|++.+.+.|+..+.. .+.+..+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999998763 223456999999999999999999998853
Q ss_pred ----------cEEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1011 ----------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
.++.++++. ..+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 234443321 12334577777666532 23599999999882 12345556
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++.++.+.++. ++..+..|+....| +.
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555542 355777777778899999999998 578899999999999999998887654 44557788888776 55
Q ss_pred HHHHHHHHHH
Q 000858 1156 SDLKNLCVTA 1165 (1251)
Q Consensus 1156 aDL~~L~~~A 1165 (1251)
+++.+++..+
T Consensus 215 R~al~~Ldq~ 224 (559)
T PRK05563 215 RDALSILDQA 224 (559)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 124
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.33 E-value=3e-11 Score=151.98 Aligned_cols=182 Identities=21% Similarity=0.370 Sum_probs=124.6
Q ss_pred CCCcccccCcHHHHH---HHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 945 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~---~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
..+|++++|++.+.. .|++.+.. . ...++||+||||||||++|+++++..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~----------~----~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA----------D----RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 468999999999885 45555431 1 22479999999999999999999999999998886531
Q ss_pred ccccCchHHHHHHHHHHHH-----hcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEec
Q 000858 1022 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~-----k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTT 1096 (1251)
....++.++..+. .....||||||||.| +...+. .|+..++ ...+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----n~~qQd-------aLL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----NKAQQD-------ALLPWVE------NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----CHHHHH-------HHHHHhc------CceEEEEEec
Confidence 1122334443331 123579999999988 211122 2222222 1456777665
Q ss_pred --CCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-------ccc-CChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000858 1097 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1097 --N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k-------~~l-~~dvdl~~LA~~T~GySgaDL~~L~~~Aa 1166 (1251)
|....+++++++|+ .++.+++++.+++..+++.++.. ..+ .++..++.|+....| ..+.+.++++.|+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34467889999997 67899999999999999998872 222 245557888887755 5677777777765
Q ss_pred h
Q 000858 1167 H 1167 (1251)
Q Consensus 1167 ~ 1167 (1251)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 3
No 125
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.1e-11 Score=154.91 Aligned_cols=184 Identities=18% Similarity=0.158 Sum_probs=127.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999998762 2233568999999999999999999999652
Q ss_pred -------------EEEEecccccccccCchHHHHHHHHHHHH----hcCCceEEEccccccccCCCCCchHHHHHHHHHh
Q 000858 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1251)
Q Consensus 1012 -------------fi~V~~s~L~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~ 1074 (1251)
|+.++.... ..-..++.+...+. .....|+||||+|.|- ....+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 222222110 11233444433332 2334699999999982 123445
Q ss_pred HHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 000858 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1251)
Q Consensus 1075 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~Gy 1153 (1251)
|+..|+.. ...++||++|+.++.|.+.|++|+ ..+.|..++.++..++|+.++.++++. ++..+..|+....|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 55555543 256788888888888999999998 688999999999999999998887654 34446667777765
Q ss_pred cHHHHHHHHHHH
Q 000858 1154 SGSDLKNLCVTA 1165 (1251)
Q Consensus 1154 SgaDL~~L~~~A 1165 (1251)
+.+++.++++..
T Consensus 214 dlR~Al~eLEKL 225 (824)
T PRK07764 214 SVRDSLSVLDQL 225 (824)
T ss_pred CHHHHHHHHHHH
Confidence 445555544443
No 126
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=3.4e-12 Score=138.98 Aligned_cols=128 Identities=22% Similarity=0.351 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------c-ChhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCC
Q 000858 688 LAINELFEVALNESKSSPLIVFVKDIEKSLT--------G-NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 756 (1251)
Q Consensus 688 ~~~~~l~evl~ses~~~P~Ilf~~die~~l~--------~-~~~~~~~l~~~L~~L~--g~VvvIgs~~~~d~~k~k~~~ 756 (1251)
..|.+||+-+.. ..|+|+|||+.|.+-. | =.++.+.|...|+.+- ..|+-|+|||
T Consensus 197 r~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN----------- 262 (368)
T COG1223 197 RRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN----------- 262 (368)
T ss_pred HHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC-----------
Confidence 348899998877 9999999999999422 2 2456666666666553 3899999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccch
Q 000858 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 836 (1251)
Q Consensus 757 ~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~I 836 (1251)
.|+-+|+ |.+.||+.+++|.||+.+-|..|
T Consensus 263 -------------------~p~~LD~-------------------------------aiRsRFEeEIEF~LP~~eEr~~i 292 (368)
T COG1223 263 -------------------RPELLDP-------------------------------AIRSRFEEEIEFKLPNDEERLEI 292 (368)
T ss_pred -------------------ChhhcCH-------------------------------HHHhhhhheeeeeCCChHHHHHH
Confidence 4444554 88889999999999999888888
Q ss_pred hHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHH-HHhhhhhhHhh
Q 000858 837 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEK-IVGWALSHHFM 881 (1251)
Q Consensus 837 l~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~-Lv~~A~s~Al~ 881 (1251)
+..- ...-++ .+.+++.|+.+|+|++|-||.. +++.|..-|+.
T Consensus 293 le~y--~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 293 LEYY--AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred HHHH--HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 7765 333444 6778999999999999999976 55666666654
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=4.1e-11 Score=137.24 Aligned_cols=157 Identities=21% Similarity=0.269 Sum_probs=108.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~ 1024 (1251)
..+|++++|.+.+++.++..+.. .+.+..+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999988752 123345777999999999999999999999999998876 11
Q ss_pred cCchHHHHHHHHHHHH-hcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCc
Q 000858 1025 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1251)
Q Consensus 1025 ~G~se~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1251)
.......+..+..... ...+.||||||+|.+. . .. ....+..++ +.. ...+.+|+++|.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----~---~~-~~~~L~~~l---e~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----L---AD-AQRHLRSFM---EAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----C---HH-HHHHHHHHH---Hhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 1246899999999871 1 11 112222222 221 24567888999999999
Q ss_pred HHHHhcccccccCCCCCHHHHHHHHHHHHh
Q 000858 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILA 1133 (1251)
Q Consensus 1104 ~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~ 1133 (1251)
+++++|| ..+.++.|+.+++..+++.++.
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999 5788999999999888776544
No 128
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5e-12 Score=136.80 Aligned_cols=215 Identities=26% Similarity=0.360 Sum_probs=158.3
Q ss_pred CCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000858 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1251)
Q Consensus 446 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~l 525 (1251)
-++-+||+...--. +-.|+-..+|.-..|-|.++-+.. .+. .-+.+||.|||| ....|||||.|||--|.++=+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qi-gid-pprgvllygppg--~gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQI-GID-PPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHh-CCC-CCcceEEeCCCC--CcHHHHHHHHhhccchheeee
Confidence 45567777776666 788999999999999999883321 233 347899999999 689999999999988876544
Q ss_pred eccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCee
Q 000858 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1251)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1251)
-.+ | .|
T Consensus 221 vgs-------------------e-------------------------------------------------------fv 226 (408)
T KOG0727|consen 221 VGS-------------------E-------------------------------------------------------FV 226 (408)
T ss_pred ccH-------------------H-------------------------------------------------------HH
Confidence 321 0 01
Q ss_pred -eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCcch
Q 000858 606 -KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 684 (1251)
Q Consensus 606 -~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~ 684 (1251)
||.|. |
T Consensus 227 qkylge------------g------------------------------------------------------------- 233 (408)
T KOG0727|consen 227 QKYLGE------------G------------------------------------------------------------- 233 (408)
T ss_pred HHHhcc------------C-------------------------------------------------------------
Confidence 34432 0
Q ss_pred hHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-------c-ChhhHHHHHHHHhcCCC-----CEEEEeeccCCCccc
Q 000858 685 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-------G-NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRK 751 (1251)
Q Consensus 685 ~~k~~~~~l~evl~ses~~~P~Ilf~~die~~l~-------~-~~~~~~~l~~~L~~L~g-----~VvvIgs~~~~d~~k 751 (1251)
-+.+..+|-+..+ ..|.|||||+||.+-. | ..+.-..+-..|..+.| ||-||.|||+.|.
T Consensus 234 --prmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt-- 306 (408)
T KOG0727|consen 234 --PRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT-- 306 (408)
T ss_pred --cHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc--
Confidence 1125567777776 9999999999999544 1 24444455566666655 9999999996554
Q ss_pred ccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhh
Q 000858 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 829 (1251)
Q Consensus 752 ~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd 829 (1251)
+|| |||| |++|.++|+|||
T Consensus 307 ----------------------------ldp-------------------------------allrpgrldrkiefplpd 327 (408)
T KOG0727|consen 307 ----------------------------LDP-------------------------------ALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred ----------------------------cCH-------------------------------hhcCCccccccccCCCCc
Confidence 444 9999 999999999999
Q ss_pred hhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000858 830 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1251)
Q Consensus 830 ~~gR~~Il~IhT~l~~~~l-~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~ 881 (1251)
..-++=++.-.| ..-.+ +++||+.+.....-.+||+|.++|.+|-.+|..
T Consensus 328 rrqkrlvf~tit--skm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 328 RRQKRLVFSTIT--SKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred hhhhhhhHHhhh--hcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 766555544333 22233 789999999999999999999999999999876
No 129
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3e-11 Score=146.88 Aligned_cols=185 Identities=22% Similarity=0.273 Sum_probs=130.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|+.++.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999998863 2233457999999999999999999988531
Q ss_pred ----------EEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHHh
Q 000858 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1251)
Q Consensus 1012 ----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 1077 (1251)
++.++... ...-..++.+...+.. ..+.||||||+|.+- ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33343321 1123345555444432 235699999999771 123444555
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 000858 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1251)
Q Consensus 1078 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySga 1156 (1251)
.++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++.+.++. ++..+..|+..+.|. .+
T Consensus 139 ~LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd-lR 212 (504)
T PRK14963 139 TLEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA-MR 212 (504)
T ss_pred HHHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 54432 245777778888899999999998 579999999999999999999887654 455677888888764 45
Q ss_pred HHHHHHHHHH
Q 000858 1157 DLKNLCVTAA 1166 (1251)
Q Consensus 1157 DL~~L~~~Aa 1166 (1251)
++.++++.+.
T Consensus 213 ~aln~Lekl~ 222 (504)
T PRK14963 213 DAESLLERLL 222 (504)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 130
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.32 E-value=6e-11 Score=128.97 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=118.4
Q ss_pred CCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000858 946 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1251)
Q Consensus 946 ~tfddI~--Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L 1020 (1251)
.+|+++. +.....+.+++++. ......++|+||+|||||++|+++++++ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 5677754 45667777777543 1234679999999999999999999887 578888998776
Q ss_pred cccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1021 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
.... ..++.... ...+|+|||+|.+-... .....+..+++... . . ...+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~---~--~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E---A--GGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H---c--CCeEEEECCCChH
Confidence 5321 23333222 24699999999872110 11233333332221 1 1 2234444443443
Q ss_pred CCc---HHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000858 1101 DLD---EAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1101 ~Ld---~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~ 1167 (1251)
.+. +.+.+||. ..+.++.|+.+++..+++.+..+..+. ++..+..|+... +-+.++|.++++.+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Confidence 332 77888874 678899999999999999887665443 455577777753 4477888888776553
No 131
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.32 E-value=1.1e-10 Score=127.72 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=113.1
Q ss_pred CCCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000858 945 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1251)
Q Consensus 945 ~~tfddI~--Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~ 1019 (1251)
..+|+++. +.+.+...++++... ......++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788855 345555666654431 1233579999999999999999999876 67888888766
Q ss_pred ccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCcc-EEEEEecCC
Q 000858 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1098 (1251)
Q Consensus 1020 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~-VlVIaTTN~ 1098 (1251)
+... + .......+|+|||+|.+ +...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l-----~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERL-----DDAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhc-----CchHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 11224579999999987 2222333333333321 1123 344443333
Q ss_pred C--CCCcHHHHhcc--cccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000858 1099 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1251)
Q Consensus 1099 p--~~Ld~aLlrRF--~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~ 1164 (1251)
+ ..+.+.+.+|| ...+.+++|+.+++..+++.+.....+. ++..++.|+....| +.+++..+++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 23567888887 4688999999988889998877665443 44557777775444 56677666665
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.32 E-value=2.4e-11 Score=154.37 Aligned_cols=210 Identities=18% Similarity=0.280 Sum_probs=133.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-------
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 1022 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s------- 1022 (1251)
++.|++++|+.+.+++...... . ......++|+||||+|||++++.||..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 5899999999999887642211 0 112246999999999999999999999999999998755321
Q ss_pred --cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHh-----HHhhccCCcccCCccEEEEEe
Q 000858 1023 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1095 (1251)
Q Consensus 1023 --~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~-----LL~~ldgl~~k~~~~VlVIaT 1095 (1251)
.|.|.....+.+.+..+.... .||||||||.+..... ......+..++.. |....-.+ .-+-.++++|||
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~-~~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEV-DYDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEecccccc-cccCCceEEEEc
Confidence 244554445555555544333 5899999999853321 1112233222221 00000001 012367999999
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh-----cccC------ChhcHHHHHHH-cCCCcHHHHHHHHH
Q 000858 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIANM-ADGYSGSDLKNLCV 1163 (1251)
Q Consensus 1096 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k-----~~l~------~dvdl~~LA~~-T~GySgaDL~~L~~ 1163 (1251)
+|.. .+++++++|| .+|.+..++.++..+|.+.++-. ..+. ++..+..|+.. +..+-.+.|+.+++
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~ 549 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREIS 549 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHH
Confidence 9887 5999999999 58899999999999999988842 1111 22234445432 22344466666666
Q ss_pred HHHhhhhHH
Q 000858 1164 TAAHCPIRE 1172 (1251)
Q Consensus 1164 ~Aa~~airr 1172 (1251)
..+...+.+
T Consensus 550 ~i~r~~l~~ 558 (784)
T PRK10787 550 KLCRKAVKQ 558 (784)
T ss_pred HHHHHHHHH
Confidence 655444444
No 133
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=5.4e-11 Score=142.84 Aligned_cols=168 Identities=15% Similarity=0.253 Sum_probs=110.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1061 (1251)
++++||||+|+|||+|++++++++ +..++.+++..+...+.......-...|...++ ...+|+||||+.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 579999999999999999999876 688888887665443221111111123443332 46899999999874322
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcc
Q 000858 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 1136 (1251)
Q Consensus 1062 ~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~k~~ 1136 (1251)
..++.+..+++.+... .+.+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..+...+
T Consensus 219 -~~qeelf~l~N~l~~~---------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 -ATQEEFFHTFNSLHTE---------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred -hhHHHHHHHHHHHHHC---------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 2344455555554421 2345555544453 56789999995 6788899999999999999988765
Q ss_pred cC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000858 1137 LA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1137 l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa 1166 (1251)
+. ++..++.|+....+ +.++|...+...+
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 44 45556778777664 4555555555443
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.31 E-value=4.4e-11 Score=131.55 Aligned_cols=190 Identities=25% Similarity=0.355 Sum_probs=136.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~ 1021 (1251)
.+.++++.|.+..++.|.+.... |.++ .|..++||+|+.|||||++++++..++ |..+|.|.-.+|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46889999999999999887653 3333 477899999999999999999999877 7778888765543
Q ss_pred ccccCchHHHHHHHHHHHHhc-CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1022 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
.+..++...+.. ..-|||+|++- | ...+. -...|...++|.-...+.+|+|.||+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDT-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcH-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 355566665532 35799999874 2 11111 124555667776666679999999999744
Q ss_pred CCcH-----------------------HHHhcccccccCCCCCHHHHHHHHHHHHhhcccCCh-hcHH----HHHHHcCC
Q 000858 1101 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLE----GIANMADG 1152 (1251)
Q Consensus 1101 ~Ld~-----------------------aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~d-vdl~----~LA~~T~G 1152 (1251)
.+.+ ++..||+..+.|..|+.++-.+|++.++...++.-+ ..+. ..|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3221 344499999999999999999999999988766533 2332 23344457
Q ss_pred CcHHHHHHHHHH
Q 000858 1153 YSGSDLKNLCVT 1164 (1251)
Q Consensus 1153 ySgaDL~~L~~~ 1164 (1251)
.||+--.+.+..
T Consensus 233 RSGRtA~QF~~~ 244 (249)
T PF05673_consen 233 RSGRTARQFIDD 244 (249)
T ss_pred CCHHHHHHHHHH
Confidence 888766655543
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=4.4e-11 Score=143.57 Aligned_cols=168 Identities=18% Similarity=0.282 Sum_probs=110.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchH-HHHHHHHHHHHhcCCceEEEccccccccC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se-~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1058 (1251)
++++||||+|+|||+|++++++++ +..++.+++.++...+..... ..+. -|...++..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 467888888776554322111 1111 233333446899999999988533
Q ss_pred CCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHh
Q 000858 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 1133 (1251)
Q Consensus 1059 r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~ 1133 (1251)
.. .+..+..+++.+.. ....+||++...|.. +.+.+.+||. ..+.+.+|+.+.|..|++..+.
T Consensus 210 ~~---~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG---VQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH---HHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 21 12333334443332 123455555566654 4567888884 4678899999999999999987
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000858 1134 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1134 k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa 1166 (1251)
...+. ++..++.||....| +.++|..++....
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~ 310 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHH
Confidence 65443 55567888888765 5666666655543
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=6.2e-11 Score=145.14 Aligned_cols=166 Identities=20% Similarity=0.303 Sum_probs=112.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1059 (1251)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|...++ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999986 578889998877665443222212223443332 46899999999885332
Q ss_pred CCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC-C---CCCcHHHHhcccc--cccCCCCCHHHHHHHHHHHHh
Q 000858 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-P---FDLDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 1133 (1251)
Q Consensus 1060 ~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-p---~~Ld~aLlrRF~~--~I~l~lPd~eeR~eIL~~ll~ 1133 (1251)
..++.+..+++.+... .+-+|| |++. + ..+++.|++||.. ++.|..|+.+.|.+||+..+.
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 2234455555555421 223444 4543 3 3577899999854 668899999999999999988
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000858 1134 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1251)
Q Consensus 1134 k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~A 1165 (1251)
...+. ++..++.|+....+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 76655 55567778887664 466666665544
No 137
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=1.5e-10 Score=128.07 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=113.7
Q ss_pred CCCccccc-C-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000858 945 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1251)
Q Consensus 945 ~~tfddI~-G-le~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~ 1019 (1251)
..+|+++. | ...+...++..... .....++|+||+|||||+|++++++++ +..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788854 3 45555555554321 112479999999999999999999876 34455555433
Q ss_pred ccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCcc-EEEEEecCC
Q 000858 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1098 (1251)
Q Consensus 1020 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~-VlVIaTTN~ 1098 (1251)
... ....++..... ..+|+||||+.+-+. +..++.+..+++.+.. .++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222222 268999999987321 1223334444444331 123 355555566
Q ss_pred CCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000858 1099 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1251)
Q Consensus 1099 p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~ 1164 (1251)
|.. +.+.+++|+. .++.+..|+.++|.++++.......+. ++..++.|+....| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 655 5799999985 678899999999999998866665443 56667888888775 45555555544
No 138
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=5.4e-11 Score=146.22 Aligned_cols=176 Identities=21% Similarity=0.265 Sum_probs=125.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|..++.. .+-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999998862 1223579999999999999999999999653
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHH----hcCCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.++... ...-..++.+...+. .....||||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 33333211 011223444333322 2234699999999882 22345555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l-~~dvdl~~LA~~T~GySg 1155 (1251)
..++.. ...+++|++|+.+..+...+++|+ ..+.|..++.++...+|+..+.++.+ .++..++.|+..+.|...
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 555442 246788888888888888999998 57899999999999999998887665 355667888888877544
Q ss_pred H
Q 000858 1156 S 1156 (1251)
Q Consensus 1156 a 1156 (1251)
.
T Consensus 216 ~ 216 (624)
T PRK14959 216 D 216 (624)
T ss_pred H
Confidence 3
No 139
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.30 E-value=2.9e-11 Score=135.04 Aligned_cols=180 Identities=24% Similarity=0.340 Sum_probs=124.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 1018 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------fi~V~~s 1018 (1251)
..+|+++.|++.+.+.|+..+.. +-..++|||||||||||+.|+++|.++..+ +...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999998752 122489999999999999999999999652 2334444
Q ss_pred cccccccCchHHHHHHHHHHHHh---------cCC-ceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCc
Q 000858 1019 SITSKWFGEGEKYVKAVFSLASK---------IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1251)
Q Consensus 1019 ~L~s~~~G~se~~I~~lF~~A~k---------~~P-sILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~ 1088 (1251)
+..+..++. ..+. -|....- .+| -||+|||.|.|. ...+.++++++..+ ..
T Consensus 98 derGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHhcc-----------cc
Confidence 443332211 1111 1222211 122 599999999983 23344455444432 25
Q ss_pred cEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHH
Q 000858 1089 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDL 1158 (1251)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL 1158 (1251)
.+++|..||..+.|...+.+|+ ..+.|+....+.....|+.+..++++. ++..++.|+...+|--.+.+
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ai 228 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAI 228 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 6889999999999999999998 467787777778888888888888776 45557888888777544433
No 140
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=6.4e-11 Score=145.75 Aligned_cols=183 Identities=19% Similarity=0.196 Sum_probs=127.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998862 2233458999999999999999999988642
Q ss_pred -------------EEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHh
Q 000858 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1251)
Q Consensus 1012 -------------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~ 1074 (1251)
++.++.+.. .+-..++.+...+.. ....|++|||+|.|- ....+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 222222110 122345555444432 223599999999882 124455
Q ss_pred HHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 000858 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1251)
Q Consensus 1075 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~Gy 1153 (1251)
|+..++.. ...+++|.+|+.++.+.+++++|+ .++.|..++.++..++++.++.++++. ++..+..|+....|
T Consensus 138 LLK~LEEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 138 LLKIVEEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHHHHhcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 66665542 356888888888899999999997 689999999999999999998887653 44456667776665
Q ss_pred cHHHHHHHHHH
Q 000858 1154 SGSDLKNLCVT 1164 (1251)
Q Consensus 1154 SgaDL~~L~~~ 1164 (1251)
+.+++.++++.
T Consensus 212 dlR~aln~Ldq 222 (584)
T PRK14952 212 SPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHH
Confidence 34444444444
No 141
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.29 E-value=1.4e-11 Score=141.75 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcc--CCCCeEEEEcChhhhhccC--------hhhH-HHHHHHHhcC--------------CCCEEEEeec
Q 000858 690 INELFEVALNES--KSSPLIVFVKDIEKSLTGN--------NDAY-GALKSKLENL--------------PSNVVVIGSH 744 (1251)
Q Consensus 690 ~~~l~evl~ses--~~~P~Ilf~~die~~l~~~--------~~~~-~~l~~~L~~L--------------~g~VvvIgs~ 744 (1251)
|.++|+.+...+ +.+|.||||||||..+.+. +++. ..|...++.+ ...|+||+++
T Consensus 196 IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTT 275 (413)
T PLN00020 196 IRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTG 275 (413)
T ss_pred HHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeC
Confidence 677777776655 4789999999999965521 2332 3444544432 3479999999
Q ss_pred cCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHH
Q 000858 745 TQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQ 822 (1251)
Q Consensus 745 ~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq 822 (1251)
| .||.+|+ ||+| ||++.
T Consensus 276 N------------------------------rpd~LDp-------------------------------ALlRpGRfDk~ 294 (413)
T PLN00020 276 N------------------------------DFSTLYA-------------------------------PLIRDGRMEKF 294 (413)
T ss_pred C------------------------------CcccCCH-------------------------------hHcCCCCCCce
Confidence 9 6677776 9999 99996
Q ss_pred HhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCC----CCHHHHHHHHhhhhhhHhhh
Q 000858 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT----LTTEGVEKIVGWALSHHFMH 882 (1251)
Q Consensus 823 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La~~tkg----~sgadI~~Lv~~A~s~Al~r 882 (1251)
+ .+|+.+.|.+|+++|++. .+++..++..|+....| |.||.-..+.-.++...+.+
T Consensus 295 i--~lPd~e~R~eIL~~~~r~--~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 295 Y--WAPTREDRIGVVHGIFRD--DGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred e--CCCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 5 489999999999999764 36778899999988876 56666666666555555443
No 142
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.29 E-value=5.8e-11 Score=146.90 Aligned_cols=181 Identities=19% Similarity=0.239 Sum_probs=120.5
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 000858 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 1018 (1251)
Q Consensus 949 ddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V~~s 1018 (1251)
+.|.+.++.+++|..++...+. . ..|...++|+|+||||||++++.+..++ .+.++.|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk------g---sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK------Q---SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh------c---CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4688999999999888763222 1 1232335799999999999999998766 2667899995
Q ss_pred ccccc----------cc------C-chHHHHHHHHHHHHh--cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhc
Q 000858 1019 SITSK----------WF------G-EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1251)
Q Consensus 1019 ~L~s~----------~~------G-~se~~I~~lF~~A~k--~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~l 1079 (1251)
.+... .+ | .....+..+|..... ....||+|||||.|... .+..+ ..|+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVL----YnLFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVL----FTLFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHH----HHHHHHh
Confidence 43211 10 1 123456667765522 23469999999999532 22222 2222221
Q ss_pred cCCcccCCccEEEEEecCC---CCCCcHHHHhcccc-cccCCCCCHHHHHHHHHHHHhhc-ccCChhcHHHHHHHcC
Q 000858 1080 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMAD 1151 (1251)
Q Consensus 1080 dgl~~k~~~~VlVIaTTN~---p~~Ld~aLlrRF~~-~I~l~lPd~eeR~eIL~~ll~k~-~l~~dvdl~~LA~~T~ 1151 (1251)
. ....++.|||++|. +..|++.+.+||.. .+.|++++.+++.+||+..+... .+.++..++.+|....
T Consensus 897 -~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 897 -T---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred -h---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 1 12367999999986 45677888888864 48889999999999999988753 2335555777777544
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.29 E-value=6.6e-11 Score=132.97 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=94.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------ccccccCchHHH-HH-------------------HHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-VK-------------------AVFSL 1038 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~------L~s~~~G~se~~-I~-------------------~lF~~ 1038 (1251)
..+||+||||||||++|+++|..+|.+|+.++|.. +.+.+.+..... +. ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998753 333333221111 11 11222
Q ss_pred HHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcc-----cCCccEEEEEecCCC-----CCCcHHHHh
Q 000858 1039 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-----KDKERVLVLAATNRP-----FDLDEAVVR 1108 (1251)
Q Consensus 1039 A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~-----k~~~~VlVIaTTN~p-----~~Ld~aLlr 1108 (1251)
|.+ .+.+|+||||+.+ ++..+..+..++.+....+.+... ..+.++.||+|+|.. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 332 3479999999986 333333444444332222222111 122468899999975 367899999
Q ss_pred cccccccCCCCCHHHHHHHHHHHH
Q 000858 1109 RLPRRLMVNLPDAPNREKIIRVIL 1132 (1251)
Q Consensus 1109 RF~~~I~l~lPd~eeR~eIL~~ll 1132 (1251)
|| ..+.++.|+.++..+|++...
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 688999999999999998865
No 144
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1e-10 Score=141.78 Aligned_cols=186 Identities=21% Similarity=0.305 Sum_probs=129.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++++|++.+.+.|+..+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 46899999999999999998852 2233568999999999999999999988641
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.++.+. ..+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 11121110 11223455555555432 34699999999872 12234555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+++|.+|+.++.+.+++.+|+ ..+.+..++.++...+++.+++..++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555442 234566666677788888999998 478999999999999999999887654 44557778888776 45
Q ss_pred HHHHHHHHHHHh
Q 000858 1156 SDLKNLCVTAAH 1167 (1251)
Q Consensus 1156 aDL~~L~~~Aa~ 1167 (1251)
+++.++++.+..
T Consensus 215 r~al~~Ldkl~~ 226 (486)
T PRK14953 215 RDAASLLDQAST 226 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 145
>PRK08727 hypothetical protein; Validated
Probab=99.27 E-value=3.6e-10 Score=124.90 Aligned_cols=145 Identities=22% Similarity=0.318 Sum_probs=95.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1061 (1251)
..++|+||+|||||+|++++++++ +..++.++..++.. .+..++.... ...+|+||||+.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 66666776544321 2333443332 34799999999884322
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCccEEEEEec-CCCCCC---cHHHHhcc--cccccCCCCCHHHHHHHHHHHHhhc
Q 000858 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-NRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 1135 (1251)
Q Consensus 1062 ~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTT-N~p~~L---d~aLlrRF--~~~I~l~lPd~eeR~eIL~~ll~k~ 1135 (1251)
..+..+..+++.+.. .+..||+|+ ..|..+ ++.+++|| ...+.++.|+.++|.+|++......
T Consensus 110 -~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRARA----------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHHH----------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 122333333333321 123344444 455544 68999997 4578899999999999999877655
Q ss_pred ccC-ChhcHHHHHHHcCC
Q 000858 1136 ELA-SDVDLEGIANMADG 1152 (1251)
Q Consensus 1136 ~l~-~dvdl~~LA~~T~G 1152 (1251)
.+. ++..++.|+..+.|
T Consensus 179 ~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCCHHHHHHHHHhCCC
Confidence 443 55667888888764
No 146
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=9.9e-11 Score=143.33 Aligned_cols=185 Identities=20% Similarity=0.298 Sum_probs=130.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999987752 223467999999999999999999999853
Q ss_pred ----------cEEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1011 ----------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
.++.++++. ..+-..++.+...+... ...|++|||+|.|- . ...+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~-------~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----T-------SAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----H-------HHHHHHH
Confidence 122232211 11233466666655432 23599999999882 1 1234555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l-~~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+++|++|+.+..+.+++++|+ ..+.|..++.++...+++..+.+.+. .++..+..++..+.| +.
T Consensus 141 KtLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555442 245777778888899999999998 58999999999999999998887664 345567788888877 45
Q ss_pred HHHHHHHHHHH
Q 000858 1156 SDLKNLCVTAA 1166 (1251)
Q Consensus 1156 aDL~~L~~~Aa 1166 (1251)
+++.++++.++
T Consensus 215 R~AlnlLekL~ 225 (605)
T PRK05896 215 RDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=8.2e-11 Score=145.52 Aligned_cols=182 Identities=21% Similarity=0.259 Sum_probs=129.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999998763 2334568999999999999999999998642
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.+++.. ...-..++.+...+... ...|++|||+|.|- ....+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 33333221 11233566666655432 12599999999882 12334555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++. ....+++|.+|+.++.|.+.+++|+ ..+.|..++.++-...+..++.+.++. ++..+..|+..+.|- .
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~-l 214 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS-M 214 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-H
Confidence 55554 2356788888888899999999998 688999999999998998888887654 455677788888763 3
Q ss_pred HHHHHHHH
Q 000858 1156 SDLKNLCV 1163 (1251)
Q Consensus 1156 aDL~~L~~ 1163 (1251)
+++.+++.
T Consensus 215 r~al~~Ld 222 (576)
T PRK14965 215 RDSLSTLD 222 (576)
T ss_pred HHHHHHHH
Confidence 44444443
No 148
>PRK06893 DNA replication initiation factor; Validated
Probab=99.27 E-value=3.2e-10 Score=125.01 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=99.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1061 (1251)
..++||||||||||+|++++|+++ +.....++..... .....++.... ...+|+||||+.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999986 4445555543211 11122333222 35799999999874322
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCc---HHHHhcc--cccccCCCCCHHHHHHHHHHHHhhcc
Q 000858 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1136 (1251)
Q Consensus 1062 ~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld---~aLlrRF--~~~I~l~lPd~eeR~eIL~~ll~k~~ 1136 (1251)
.....+..+++.+.. .+..++|++++..|..++ +.+.+|+ +..+.++.|+.++|.+|++..+....
T Consensus 108 -~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 -EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 112233333333221 113345566666666554 7888876 45788999999999999998887655
Q ss_pred cC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 000858 1137 LA-SDVDLEGIANMADGYSGSDLKNLCV 1163 (1251)
Q Consensus 1137 l~-~dvdl~~LA~~T~GySgaDL~~L~~ 1163 (1251)
+. ++..++.|++...| +.+.|..+++
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 43 56667888888765 3444444443
No 149
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.2e-10 Score=145.06 Aligned_cols=190 Identities=21% Similarity=0.285 Sum_probs=132.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 1017 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V---~~---- 1017 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999998863 22345689999999999999999999986532100 00
Q ss_pred ------cccc-cc-ccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCccc
Q 000858 1018 ------SSIT-SK-WFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1251)
Q Consensus 1018 ------s~L~-s~-~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k 1085 (1251)
.++. .. ....+...++.+...+... ...|++|||+|.|- ....+.|+..++..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP--- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP--- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC---
Confidence 0100 00 0001234577777766543 23699999999882 12345666666542
Q ss_pred CCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000858 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1251)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~ 1164 (1251)
+..+++|++|+.++.|.+.+++|+ .++.|..++.++...+++..+.+.++. .+..+..||..+.|- .+++..++..
T Consensus 146 -P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs-lR~AlslLek 222 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS-LRDALSIAEQ 222 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 356788888888899999999999 589999999999999999888876654 344477788888764 4455554444
Q ss_pred H
Q 000858 1165 A 1165 (1251)
Q Consensus 1165 A 1165 (1251)
+
T Consensus 223 l 223 (725)
T PRK07133 223 V 223 (725)
T ss_pred H
Confidence 3
No 150
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=1.6e-10 Score=143.85 Aligned_cols=230 Identities=19% Similarity=0.249 Sum_probs=137.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 1014 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~ 1014 (1251)
..+|++|+|++...+.+...+.. . .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~-~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------P-FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------C-CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 45899999999998887665531 1 13579999999999999999998655 357899
Q ss_pred Eeccccc-------ccccCchHHH----HHHHHH----------HHHhcCCceEEEccccccccCCCCCchHHHHHHHHH
Q 000858 1015 ISMSSIT-------SKWFGEGEKY----VKAVFS----------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1251)
Q Consensus 1015 V~~s~L~-------s~~~G~se~~----I~~lF~----------~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~ 1073 (1251)
++|..+. ..+++..... .+..+. .......++|||||++.| +...+..+..++.
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 9987652 1122221110 001110 011223579999999988 3334444444444
Q ss_pred hHHhhccC-----------------CcccCCccEEEEEe-cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc
Q 000858 1074 EFMVNWDG-----------------LRTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1135 (1251)
Q Consensus 1074 ~LL~~ldg-----------------l~~k~~~~VlVIaT-TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~ 1135 (1251)
.-...+.+ +....+..+++|++ |+.+..+++++++||. .+.+++++.+++..|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 32111100 00011234566654 5668889999999995 67888899999999999998875
Q ss_pred ccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 000858 1136 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1214 (1251)
Q Consensus 1136 ~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~ 1214 (1251)
.+. ++..++.|+..+. .++...+++..+...+..+.. .. . .......|+.+|+++++..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~-~---------~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA-G---------KENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh-c---------cCCCCeeECHHHHHHHhCC
Confidence 432 3444555665542 344444455454432222210 00 0 0012256899999999875
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.6e-10 Score=139.11 Aligned_cols=184 Identities=21% Similarity=0.251 Sum_probs=127.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 46899999999999999988762 2334679999999999999999999988542
Q ss_pred ------------EEEEecccccccccCchHHHHHHHHHHHH----hcCCceEEEccccccccCCCCCchHHHHHHHHHhH
Q 000858 1012 ------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1251)
Q Consensus 1012 ------------fi~V~~s~L~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~L 1075 (1251)
++.+++... . +-..++.+...+. .....||+|||+|.|- ....+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHH
Confidence 233332110 1 1123333332222 2345799999999882 1123455
Q ss_pred HhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 000858 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1251)
Q Consensus 1076 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GyS 1154 (1251)
+..++.. ...+++|++|+.+..|.+++++|+ ..+.+..++.++...+++..+++.++. ++..++.|+..+.| +
T Consensus 142 Lk~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555542 246777777888889999999998 578999999999999999888876643 55567888888876 4
Q ss_pred HHHHHHHHHHH
Q 000858 1155 GSDLKNLCVTA 1165 (1251)
Q Consensus 1155 gaDL~~L~~~A 1165 (1251)
.+++.++++..
T Consensus 216 lr~a~~~Lekl 226 (451)
T PRK06305 216 LRDAESLYDYV 226 (451)
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.3e-10 Score=142.99 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=130.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999998862 2234569999999999999999999998652
Q ss_pred -----------EEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1012 -----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
++.+++.. ...-..++.+...+.. ....|++|||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222110 0122345555544332 234699999999882 12345566
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++. .+..+++|++|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. ++..+..|+....| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 66554 2356778788888888999999998 478899999999999999988776644 45567778888776 56
Q ss_pred HHHHHHHHHH
Q 000858 1156 SDLKNLCVTA 1165 (1251)
Q Consensus 1156 aDL~~L~~~A 1165 (1251)
+++.+++..+
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 153
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=1e-10 Score=135.82 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=106.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEE----
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFI---- 1013 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg-------~~fi---- 1013 (1251)
...|.+|+|++++|..|...+.. ....+|||.|++|||||++|++++..+. .+|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 35789999999999999776542 2235899999999999999999977662 2332
Q ss_pred -----------------------------EEecccccccccCchHHHHHHHHHHHH---------hcCCceEEEcccccc
Q 000858 1014 -----------------------------NISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 1014 -----------------------------~V~~s~L~s~~~G~se~~I~~lF~~A~---------k~~PsILfIDEID~L 1055 (1251)
.+....-....+|.. .+...|.... +...++||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 000000011111210 0111111111 122489999999988
Q ss_pred ccCCCCCchHHHHHHHHHhHHhhc--cCCcccCCccEEEEEecCCCC-CCcHHHHhcccccccCCCCC-HHHHHHHHHHH
Q 000858 1056 LGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 1131 (1251)
Q Consensus 1056 ~~~r~~~~~~e~~~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd-~eeR~eIL~~l 1131 (1251)
++..+..+..++.+-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|. .+.|.+|++..
T Consensus 157 -----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 157 -----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred -----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 3334444434333322222 344333456899999888765 69999999999999999997 59999999886
Q ss_pred H
Q 000858 1132 L 1132 (1251)
Q Consensus 1132 l 1132 (1251)
.
T Consensus 232 ~ 232 (350)
T CHL00081 232 T 232 (350)
T ss_pred h
Confidence 4
No 154
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.7e-10 Score=142.72 Aligned_cols=192 Identities=22% Similarity=0.174 Sum_probs=134.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe--------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------- 1016 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~-------- 1016 (1251)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 46899999999999999997763 234568999999999999999999999865432111
Q ss_pred -----c--------cccccc--ccCchHHHHHHHHHHHHhcC----CceEEEccccccccCCCCCchHHHHHHHHHhHHh
Q 000858 1017 -----M--------SSITSK--WFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1251)
Q Consensus 1017 -----~--------s~L~s~--~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 1077 (1251)
| .++... -...+-..++.+...+...+ ..||||||+|.|- ....+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHH
Confidence 0 011100 00112345777776665332 4699999999882 123445555
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 000858 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1251)
Q Consensus 1078 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySga 1156 (1251)
.++.. ...+.+|.+|+.++.+.+.+++|+ ..+.|..++.++...+++..+.+.++. ++..++.|+..+.| +.+
T Consensus 155 tLEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55442 245677777777778888999998 679999999999999999998887654 44567778888876 566
Q ss_pred HHHHHHHHHHh
Q 000858 1157 DLKNLCVTAAH 1167 (1251)
Q Consensus 1157 DL~~L~~~Aa~ 1167 (1251)
++.+++..+..
T Consensus 229 ~al~~Ldkli~ 239 (598)
T PRK09111 229 DGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHHh
Confidence 66666665543
No 155
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2e-10 Score=134.65 Aligned_cols=186 Identities=18% Similarity=0.213 Sum_probs=127.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------EE
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------IN 1014 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f----------i~ 1014 (1251)
..+|++++|++.+++.+...+.. .+.+.++|||||||+|||++|+++++.+..+. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 46899999999999999988752 22346899999999999999999999885421 11
Q ss_pred EecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccE
Q 000858 1015 ISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1251)
Q Consensus 1015 V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~V 1090 (1251)
+... .........++.++..+... ...||+|||+|.+.. ..++.++..++.. ....
T Consensus 80 ~~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~~~ 139 (367)
T PRK14970 80 FELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PAHA 139 (367)
T ss_pred EEec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CCce
Confidence 1110 00112234667777766432 246999999998721 1234455444432 2345
Q ss_pred EEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000858 1091 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1251)
Q Consensus 1091 lVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~A 1165 (1251)
++|.+++.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++..
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl 213 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRV 213 (367)
T ss_pred EEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 66666777788889999998 578999999999999999988887653 55667778877765 445444444443
No 156
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.24 E-value=8.5e-11 Score=141.61 Aligned_cols=194 Identities=23% Similarity=0.271 Sum_probs=144.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 1016 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f-------i~V~- 1016 (1251)
..+|+|++|++.+...|...+.. .+-..++||.||.|+|||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46899999999999999998874 23346799999999999999999999986542 1111
Q ss_pred ccccccc-cc---------CchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCC
Q 000858 1017 MSSITSK-WF---------GEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1251)
Q Consensus 1017 ~s~L~s~-~~---------G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl 1082 (1251)
|-.+... +. ..+-..++.+.+.+.. ...-|++|||+|.| ....++.|+..++.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhccccc-
Confidence 1111111 11 1123456666666643 23469999999987 24566777777665
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHH
Q 000858 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1161 (1251)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L 1161 (1251)
++.+|.+|.+|..++.++..+++|+ .++.|...+.++....|..++.++.+. ++.-+..||+..+| +.+|...|
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 4578999999999999999999998 678899999999999999999998877 44557778888887 66777777
Q ss_pred HHHHHhhh
Q 000858 1162 CVTAAHCP 1169 (1251)
Q Consensus 1162 ~~~Aa~~a 1169 (1251)
+..|....
T Consensus 221 LDq~i~~~ 228 (515)
T COG2812 221 LDQAIAFG 228 (515)
T ss_pred HHHHHHcc
Confidence 77776543
No 157
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.23 E-value=2.7e-11 Score=146.58 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhccC-CCCeEEEEcChhhhhcc-----Chh----hHHHHHHHHhcCC--CCEEEEeeccCCCcccccCC
Q 000858 688 LAINELFEVALNESK-SSPLIVFVKDIEKSLTG-----NND----AYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSH 755 (1251)
Q Consensus 688 ~~~~~l~evl~ses~-~~P~Ilf~~die~~l~~-----~~~----~~~~l~~~L~~L~--g~VvvIgs~~~~d~~k~k~~ 755 (1251)
..+..+|+.+...+. ..|+||||||+|.++.. +.+ +.+.|...|+.+. ++|+|||+||
T Consensus 272 ~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN---------- 341 (512)
T TIGR03689 272 RQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN---------- 341 (512)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC----------
Confidence 346677777766444 67999999999997652 122 2344444555553 5899999999
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcc
Q 000858 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 833 (1251)
Q Consensus 756 ~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR 833 (1251)
.||.+|+ |++| ||++++++++|+.+.|
T Consensus 342 --------------------~~d~LDp-------------------------------ALlRpGRfD~~I~~~~Pd~e~r 370 (512)
T TIGR03689 342 --------------------REDMIDP-------------------------------AILRPGRLDVKIRIERPDAEAA 370 (512)
T ss_pred --------------------ChhhCCH-------------------------------hhcCccccceEEEeCCCCHHHH
Confidence 4555665 9998 9999999999999999
Q ss_pred cchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000858 834 SNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1251)
Q Consensus 834 ~~Il~IhT~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~ 881 (1251)
.+|++.|..-. -++ + .....+.|+.++++.++|..+....+.
T Consensus 371 ~~Il~~~l~~~-l~l-~----~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 371 ADIFSKYLTDS-LPL-D----ADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHHHHHHhhcc-CCc-h----HHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 99999984211 112 1 222346899999999999999766654
No 158
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.22 E-value=1.3e-10 Score=134.73 Aligned_cols=166 Identities=20% Similarity=0.269 Sum_probs=104.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEE
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINI 1015 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-------g~~--fi~V 1015 (1251)
...|.+|.|++++++.|.-.+.. . ...++||+|+||+|||++|++++..+ +++ +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~----------~----~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID----------P----GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc----------c----CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35789999999999988654321 0 12479999999999999999999988 332 1111
Q ss_pred ec-ccc--------c---------------ccccCch--HHH--------HHHHHHHHHhcCCceEEEccccccccCCCC
Q 000858 1016 SM-SSI--------T---------------SKWFGEG--EKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1251)
Q Consensus 1016 ~~-s~L--------~---------------s~~~G~s--e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1061 (1251)
.+ .++ . ...+|.. +.. -.+.+..| ..++||||||+.+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl-----~ 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL-----E 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC-----C
Confidence 10 000 0 0012210 000 01111112 2379999999987 3
Q ss_pred CchHHHHHHHHHhHH--hhccCCcccCCccEEEEEecCCCC-CCcHHHHhcccccccCCCCCH-HHHHHHHHHHH
Q 000858 1062 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1132 (1251)
Q Consensus 1062 ~~~~e~~~~il~~LL--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd~-eeR~eIL~~ll 1132 (1251)
+..+..+...+++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 333344444443322 123444434457899999999755 689999999998899988876 89999998754
No 159
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.21 E-value=5.5e-11 Score=139.32 Aligned_cols=207 Identities=23% Similarity=0.297 Sum_probs=133.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSI 1020 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~e----lg~~fi~V~~s~L 1020 (1251)
...+.+++|.....+.+++.+.. + ..-..+|||+|++||||+.+|+.|... .+.|||.+||+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34678899998888888887753 1 112246999999999999999999643 3689999999875
Q ss_pred ccc-----ccCc-------hHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCc
Q 000858 1021 TSK-----WFGE-------GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1251)
Q Consensus 1021 ~s~-----~~G~-------se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~ 1088 (1251)
... .||. ....-..+|+.|.. ++||+|||..| ++..++.+.++++.....--|-......
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcCC
Confidence 432 2332 12233446666655 89999999988 6677888888888766554444444567
Q ss_pred cEEEEEecCCC--CCCcH--HHHhcccccccCCCCCHHHHHH----HHHHHHhh----cccCChhc----HHHHHHHcCC
Q 000858 1089 RVLVLAATNRP--FDLDE--AVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELASDVD----LEGIANMADG 1152 (1251)
Q Consensus 1089 ~VlVIaTTN~p--~~Ld~--aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k----~~l~~dvd----l~~LA~~T~G 1152 (1251)
.|++|++|+.. +.+-. .+.+|. ..+.+.+|...+|.. ++++++.. .+.....+ +..|-...--
T Consensus 214 dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~p 292 (403)
T COG1221 214 DVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWP 292 (403)
T ss_pred CceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 89999999742 22323 344432 246677788777643 45555544 33321111 2222222212
Q ss_pred CcHHHHHHHHHHHHhhhhHH
Q 000858 1153 YSGSDLKNLCVTAAHCPIRE 1172 (1251)
Q Consensus 1153 ySgaDL~~L~~~Aa~~airr 1172 (1251)
-+.++|+++++.++..+...
T Consensus 293 GNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 293 GNIRELKNLVERAVAQASGE 312 (403)
T ss_pred CcHHHHHHHHHHHHHHhccc
Confidence 26789999999998877543
No 160
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=3.8e-10 Score=137.38 Aligned_cols=187 Identities=21% Similarity=0.249 Sum_probs=132.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|++++|++.+++.|+..+.. + +-+..+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~----------g---rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN----------N---RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999998752 2 23356799999999999999999998732
Q ss_pred ----------cEEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1011 ----------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
.++.++... ..+-..++.+...+... ...|++|||+|.| + ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----t-------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----T-------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----C-------HHHHHHHH
Confidence 122232211 01123455555443321 1259999999988 2 12334455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000858 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1077 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySg 1155 (1251)
..++.. +..+.+|.+|+.+..+.+++++|+ ..+.|..++.++-...++..+...++. ++..+..|+....| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555442 245667777777899999999997 689999999999999999988887654 45667888888876 67
Q ss_pred HHHHHHHHHHHhh
Q 000858 1156 SDLKNLCVTAAHC 1168 (1251)
Q Consensus 1156 aDL~~L~~~Aa~~ 1168 (1251)
+++.+++..|...
T Consensus 213 R~alnlLdqai~~ 225 (535)
T PRK08451 213 RDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766544
No 161
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.1e-11 Score=133.54 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=112.0
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccCC
Q 000858 689 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 755 (1251)
Q Consensus 689 ~~~~l~evl~ses~~~P~Ilf~~die~~l~--------~~~~~~~~l~~~L~~L~g-----~VvvIgs~~~~d~~k~k~~ 755 (1251)
+|.+-|.-+.. ++|+|||++|||.... .++++-..|.+.|+.+.| .|-+|.++|
T Consensus 213 lIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN---------- 279 (388)
T KOG0651|consen 213 LIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN---------- 279 (388)
T ss_pred HHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC----------
Confidence 35555554444 9999999999999655 356777777788887754 999999999
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcc
Q 000858 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 833 (1251)
Q Consensus 756 ~~~~~~~~~~~~~~~l~d~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR 833 (1251)
.||.+|+ ||+| |.++.+++|+|++.+|
T Consensus 280 --------------------rpdtLdp-------------------------------aLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 280 --------------------RPDTLDP-------------------------------ALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred --------------------Cccccch-------------------------------hhcCCccccceeccCCcchhhc
Confidence 6677777 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHhhhhh
Q 000858 834 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 912 (1251)
Q Consensus 834 ~~Il~IhT~-l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~Id~~sIkv~~~df~~al~ 912 (1251)
..|++||.. +...+- .+-+.+.....+|+|+|++..|++|--+++.. ....+...+|+.+..
T Consensus 309 ~~I~Kih~~~i~~~Ge--id~eaivK~~d~f~gad~rn~~tEag~Fa~~~---------------~~~~vl~Ed~~k~vr 371 (388)
T KOG0651|consen 309 LGILKIHVQPIDFHGE--IDDEAILKLVDGFNGADLRNVCTEAGMFAIPE---------------ERDEVLHEDFMKLVR 371 (388)
T ss_pred eeeEeecccccccccc--ccHHHHHHHHhccChHHHhhhcccccccccch---------------hhHHHhHHHHHHHHH
Confidence 999999986 444432 22466777888999999999999998777541 112344677777655
Q ss_pred hhhh
Q 000858 913 ESKS 916 (1251)
Q Consensus 913 eik~ 916 (1251)
++..
T Consensus 372 k~~~ 375 (388)
T KOG0651|consen 372 KQAD 375 (388)
T ss_pred HHHH
Confidence 5543
No 162
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=4e-10 Score=133.84 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=124.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 46899999999999999887762 2334569999999999999999999999662
Q ss_pred -------------------EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHH
Q 000858 1012 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAM 1068 (1251)
Q Consensus 1012 -------------------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~ 1068 (1251)
++.++... ......++.+.+.+... ...||||||+|.|- .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~--- 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------I--- 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------H---
Confidence 11121110 01123455554444321 23599999999882 1
Q ss_pred HHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHH
Q 000858 1069 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1147 (1251)
Q Consensus 1069 ~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l-~~dvdl~~LA 1147 (1251)
...+.|+..++.. ....++|.+|+.+..+.+++.+|+ ..+.+..++.++-..+++..++..+. .++..++.|+
T Consensus 142 -~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 142 -AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred -HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1223344444432 234566666667788888898888 57899999999988888888877654 3556678888
Q ss_pred HHcCCCcHHHHHHHHHHH
Q 000858 1148 NMADGYSGSDLKNLCVTA 1165 (1251)
Q Consensus 1148 ~~T~GySgaDL~~L~~~A 1165 (1251)
..+.| +.+.+.++++.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl 232 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQV 232 (397)
T ss_pred HHcCC-CHHHHHHHHHHH
Confidence 88876 445555555544
No 163
>PRK06620 hypothetical protein; Validated
Probab=99.19 E-value=9.2e-10 Score=120.36 Aligned_cols=143 Identities=17% Similarity=0.242 Sum_probs=95.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCch
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1064 (1251)
+.++||||||+|||+|++++++..+..++.. .. . ....+ + ...+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~--~~-----~------~~~~~----~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD--IF-----F------NEEIL----E-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcch--hh-----h------chhHH----h-cCCEEEEeccccc--------h
Confidence 5799999999999999999999887644321 00 0 01111 1 2379999999965 1
Q ss_pred HHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC--CcHHHHhcccc--cccCCCCCHHHHHHHHHHHHhhcccC-C
Q 000858 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAKEELA-S 1139 (1251)
Q Consensus 1065 ~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~--Ld~aLlrRF~~--~I~l~lPd~eeR~eIL~~ll~k~~l~-~ 1139 (1251)
...+..+++.+.. .+..+||+++..|.. + +.+++|+.. ++.+..|+.+.+..+++..+....+. +
T Consensus 99 ~~~lf~l~N~~~e---------~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIINE---------KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHHh---------cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2334444444431 245677777755543 5 789999853 68899999999999999888765543 5
Q ss_pred hhcHHHHHHHcCCCcHHHHHHHHHH
Q 000858 1140 DVDLEGIANMADGYSGSDLKNLCVT 1164 (1251)
Q Consensus 1140 dvdl~~LA~~T~GySgaDL~~L~~~ 1164 (1251)
+..++.|+....| +.+.+.++++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 5667888887765 44555555444
No 164
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=5.7e-11 Score=141.34 Aligned_cols=202 Identities=24% Similarity=0.328 Sum_probs=135.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 1020 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L- 1020 (1251)
..+|++|+|.......+.+.+.. +......|||.|.+||||..+|++|.+.. +.|||.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999999988888876652 13334679999999999999999998776 789999999764
Q ss_pred ----cccccCchHHH--------HHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCc
Q 000858 1021 ----TSKWFGEGEKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1251)
Q Consensus 1021 ----~s~~~G~se~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~ 1088 (1251)
.+..||..... -.++|+.|.. +.||||||..| +...|..+.+++++-...--|.....+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 34455532211 2335555554 89999999988 5566777778888766555555444568
Q ss_pred cEEEEEecCCC--CCCcH-----HHHhcccccccCCCCCHHHHHH----HHHHHHhhc----cc-CChhcHHHHHHHcC-
Q 000858 1089 RVLVLAATNRP--FDLDE-----AVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-ASDVDLEGIANMAD- 1151 (1251)
Q Consensus 1089 ~VlVIaTTN~p--~~Ld~-----aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~----~l-~~dvdl~~LA~~T~- 1151 (1251)
.|+||||||+. +.+.. .+.=|+ .++.+.+|...+|.+ +..+|+.+. +. ...+.-+.++....
T Consensus 381 DVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 381 DVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 89999999973 12222 222255 477888899888765 445555542 11 12233333333322
Q ss_pred CC--cHHHHHHHHHHHHh
Q 000858 1152 GY--SGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1152 Gy--SgaDL~~L~~~Aa~ 1167 (1251)
.| +.++|.|++++|+.
T Consensus 460 ~WPGNVRELeNviER~v~ 477 (560)
T COG3829 460 DWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCchHHHHHHHHHHHHh
Confidence 23 45889999988885
No 165
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=5.2e-10 Score=134.75 Aligned_cols=170 Identities=17% Similarity=0.260 Sum_probs=113.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchHH---HHHHHHHHHHhcCCceEEEccccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 1056 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se~---~I~~lF~~A~k~~PsILfIDEID~L~ 1056 (1251)
++++|||++|+|||+|++++++++ +..++.+++.++...+...... .+.. |..-. ....+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999865 5778888887766544322111 1111 11111 246799999999883
Q ss_pred cCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHH
Q 000858 1057 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 1131 (1251)
Q Consensus 1057 ~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~l 1131 (1251)
++. ..++.+..+++.+... .+.+||++...|. .+++.+.+||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k~---~~~e~lf~l~N~~~~~---------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFIEN---------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHHHc---------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 221 2344455555554321 2234444444443 45788999985 46778899999999999999
Q ss_pred Hhhccc---CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000858 1132 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1251)
Q Consensus 1132 l~k~~l---~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~a 1169 (1251)
+...++ .++..++.|+....| +.+.|..+|..+...+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 987543 355667888888876 5777887777765433
No 166
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.18 E-value=2.3e-10 Score=112.77 Aligned_cols=124 Identities=41% Similarity=0.637 Sum_probs=80.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCchHHH---HHHHHHHHHhcCCceEEEcccccccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~se~~---I~~lF~~A~k~~PsILfIDEID~L~~ 1057 (1251)
..+++|+||||+|||++++.++..+ +.+++.+++.............. ....+..+....+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3579999999999999999999998 89999999877554322211111 1222334445568999999999761
Q ss_pred CCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC--CCcHHHHhcccccccCC
Q 000858 1058 RRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVN 1117 (1251)
Q Consensus 1058 ~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~l~ 1117 (1251)
.........++..+. ... ....++.+|++++... .+++.+.+||+.++.++
T Consensus 98 ----~~~~~~~~~~i~~~~---~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 ----RGAQNALLRVLETLN---DLR--IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ----HHHHHHHHHHHHhcC---cee--ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 111112222222221 111 1135688889998776 78888999998666654
No 167
>PRK05642 DNA replication initiation factor; Validated
Probab=99.18 E-value=1.6e-09 Score=119.94 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=103.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1061 (1251)
+.++|+||+|+|||+|++++++++ +..++.++..++... ...+...... ..+|+|||++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 579999999999999999999765 677788887665532 1122222222 2689999999873221
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC---CCcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcc
Q 000858 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 1136 (1251)
Q Consensus 1062 ~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~k~~ 1136 (1251)
..++.+..+++.+. .+++.+||+++..|. .+.+.+++||. .++.+..|+.++|.++++.......
T Consensus 114 -~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 -DWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred -HHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 22334445555432 124556776665553 33688999984 5677899999999999996655544
Q ss_pred cC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000858 1137 LA-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1251)
Q Consensus 1137 l~-~dvdl~~LA~~T~GySgaDL~~L~~~ 1164 (1251)
+. ++..++.|++...+ +.+.+..+++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 211 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLER 211 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 32 55567778877765 45555555443
No 168
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.17 E-value=6.3e-10 Score=126.96 Aligned_cols=184 Identities=22% Similarity=0.283 Sum_probs=122.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg-----~~fi~V~~s~ 1019 (1251)
..+|+++.|.+++++.|..++.. + ...++||+||||+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 46899999999999999987752 1 113699999999999999999999872 3456665443
Q ss_pred ccccccCchHHHHHHHH-HHHHh-----cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEE
Q 000858 1020 ITSKWFGEGEKYVKAVF-SLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1251)
Q Consensus 1020 L~s~~~G~se~~I~~lF-~~A~k-----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVI 1093 (1251)
..+ ...++..+ ..+.. ..+.+|+|||+|.+.. .. .+.+...++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~~-------~~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----DA-------QQALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----HH-------HHHHHHHHhcCC----CCCeEE
Confidence 211 11222222 22222 2245999999998821 11 122333333222 234566
Q ss_pred EecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000858 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1094 aTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa 1166 (1251)
.++|.+..+.+.+.+|+. ++.+..++.++...+++.++.+.++. ++..++.|+..+.|. .+.+.+.++.++
T Consensus 137 l~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd-~r~~~~~l~~~~ 208 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD-MRKAINALQAAA 208 (319)
T ss_pred EEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 677777778888888984 68999999999999999999887653 566688888887764 444444444444
No 169
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=4.8e-10 Score=139.45 Aligned_cols=182 Identities=21% Similarity=0.245 Sum_probs=128.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------- 1011 (1251)
..+|++++|++.+++.|...+.. . +-..++||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~----------~---rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS----------N---RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 46899999999999999998863 1 123579999999999999999999998663
Q ss_pred -------------EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHh
Q 000858 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1251)
Q Consensus 1012 -------------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~ 1074 (1251)
++.++. .....-..++.++..+... ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 112211 1123345677877766532 23699999999881 123455
Q ss_pred HHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 000858 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1251)
Q Consensus 1075 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~Gy 1153 (1251)
|+..++. ....+++|++|+.+..+.+.+++|+ ..+.|..++.++-...+..++.+.++. ++..+..|+..+.|.
T Consensus 141 LLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 6666654 2355777777778888989999998 678888888888888888877775443 345577888888775
Q ss_pred cHHHHHHHHH
Q 000858 1154 SGSDLKNLCV 1163 (1251)
Q Consensus 1154 SgaDL~~L~~ 1163 (1251)
. +++.++++
T Consensus 216 l-r~A~~lLe 224 (620)
T PRK14948 216 L-RDAESLLD 224 (620)
T ss_pred H-HHHHHHHH
Confidence 3 44444444
No 170
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.16 E-value=8.1e-10 Score=121.18 Aligned_cols=167 Identities=19% Similarity=0.339 Sum_probs=104.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchHH-HHHHHHHHHHhcCCceEEEccccccccC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se~-~I~~lF~~A~k~~PsILfIDEID~L~~~ 1058 (1251)
..++||||+|+|||+|.+|+++++ +..++++++.++...+...... .+.. |....+ ...+|+||+|+.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc
Confidence 459999999999999999998875 5778889887765443221111 1111 222222 4579999999998421
Q ss_pred CCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC---CCcHHHHhcccc--cccCCCCCHHHHHHHHHHHHh
Q 000858 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 1133 (1251)
Q Consensus 1059 r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~--~I~l~lPd~eeR~eIL~~ll~ 1133 (1251)
...++.+..+++.+... ++.+||++...|. .+++.+.+||.. .+.+..|+.+.|.+|++....
T Consensus 113 ---~~~q~~lf~l~n~~~~~---------~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 113 ---QRTQEELFHLFNRLIES---------GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp ---HHHHHHHHHHHHHHHHT---------TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhh---------CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 12244555555555422 3455666655554 356889999855 788899999999999999998
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000858 1134 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1134 k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa 1166 (1251)
...+. ++..++.|+....+ +.++|..++....
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 87665 44556777777653 6677777666544
No 171
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-10 Score=138.89 Aligned_cols=208 Identities=21% Similarity=0.279 Sum_probs=143.7
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 1021 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~-- 1021 (1251)
.+.+++|....++++++.+.. +......|||+|++||||..+|++|.... +.|||.+||+.+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~k------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK------------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456899999999999888763 12233579999999999999999998776 6799999997743
Q ss_pred ---ccccCchH-------HHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEE
Q 000858 1022 ---SKWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1251)
Q Consensus 1022 ---s~~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~Vl 1091 (1251)
+..||... ..-.+.|+.|.. +.||||||..| +...|..+.+++++-....-|.....+.+|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 33455322 122335666655 89999999988 4456667777777665555555444567899
Q ss_pred EEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhh----ccc-CChhcHHHHHHHcC-CC-
Q 000858 1092 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVDLEGIANMAD-GY- 1153 (1251)
Q Consensus 1092 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k----~~l-~~dvdl~~LA~~T~-Gy- 1153 (1251)
||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++|+++ .+. ...+.-+.++.+.. .|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999873 23334555577 588899999888876 55666655 222 24455566665554 33
Q ss_pred -cHHHHHHHHHHHHhhhhHHHHH
Q 000858 1154 -SGSDLKNLCVTAAHCPIREILE 1175 (1251)
Q Consensus 1154 -SgaDL~~L~~~Aa~~airriie 1175 (1251)
+.++|+|++++++..+-...++
T Consensus 358 GNVREL~N~ver~~il~~~~~i~ 380 (464)
T COG2204 358 GNVRELENVVERAVILSEGPEIE 380 (464)
T ss_pred hHHHHHHHHHHHHHhcCCccccc
Confidence 4478889998888766554433
No 172
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.15 E-value=1.7e-10 Score=132.46 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=99.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--ccCchH----------HHHHHHHHHHHhcCCceEEEccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 1052 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~--~~G~se----------~~I~~lF~~A~k~~PsILfIDEI 1052 (1251)
++|||.||||||||++|+.+|..++.+++.+++...... ++|... ....+.+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999988653332 344311 122334555554 4588999999
Q ss_pred cccccCCCCCchHHHHHHHHHh-HHhhccCC--cccCCccEEEEEecCCCC------------CCcHHHHhcccccccCC
Q 000858 1053 DSMLGRRENPGEHEAMRKMKNE-FMVNWDGL--RTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 1117 (1251)
Q Consensus 1053 D~L~~~r~~~~~~e~~~~il~~-LL~~ldgl--~~k~~~~VlVIaTTN~p~------------~Ld~aLlrRF~~~I~l~ 1117 (1251)
|.. .+..+..+..++.. -...+.+. .......++||||+|..+ .++++++.||..++.+.
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 33344444445442 01112111 111335799999999854 57899999997778999
Q ss_pred CCCHHHHHHHHHHHHh
Q 000858 1118 LPDAPNREKIIRVILA 1133 (1251)
Q Consensus 1118 lPd~eeR~eIL~~ll~ 1133 (1251)
+|+.++-.+|+.....
T Consensus 219 Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 219 YLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999887643
No 173
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=8e-10 Score=137.23 Aligned_cols=183 Identities=22% Similarity=0.279 Sum_probs=125.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f------------ 1012 (1251)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887762 12335689999999999999999999986422
Q ss_pred -------------EEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhH
Q 000858 1013 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1251)
Q Consensus 1013 -------------i~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~L 1075 (1251)
+.++... ...-..++.+...+.. ....||||||+|.|- ...++.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 1222110 1122345555444332 224699999999882 1233445
Q ss_pred HhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 000858 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1251)
Q Consensus 1076 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GyS 1154 (1251)
+..++.. ...++||.+++..+.+.+.+++|+ ..+.|..++..+...+++.++.+.++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555442 245667777777778888898888 578899999999999999888776643 44557788888776 5
Q ss_pred HHHHHHHHHH
Q 000858 1155 GSDLKNLCVT 1164 (1251)
Q Consensus 1155 gaDL~~L~~~ 1164 (1251)
.+++.++++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 174
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=1.4e-09 Score=134.82 Aligned_cols=187 Identities=18% Similarity=0.212 Sum_probs=124.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------- 1014 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~---------- 1014 (1251)
..+|++|+|++.+++.|+..+.. .+-+..+||+||+|+|||++|+.+|+.+.+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999987752 2234569999999999999999999999763100
Q ss_pred Eecc--------------cccccccC---chHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHH
Q 000858 1015 ISMS--------------SITSKWFG---EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1251)
Q Consensus 1015 V~~s--------------~L~s~~~G---~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~ 1073 (1251)
-.|. ++. .+-+ .....++.+.+.+.. ...-|++|||+|.|- . ...+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~----~a~n 145 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------T----AAFN 145 (620)
T ss_pred CCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------H----HHHH
Confidence 0010 000 0001 112345555444421 223599999999882 1 1234
Q ss_pred hHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCC
Q 000858 1074 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 1152 (1251)
Q Consensus 1074 ~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l-~~dvdl~~LA~~T~G 1152 (1251)
.|+..++.. ...+++|.+|+.+..|.+.+++|+ ..+.|..++.++-..+++..+...+. .++..++.|+..+.|
T Consensus 146 aLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 555555442 234566666677788888999998 68999999999988888888887664 356667888888877
Q ss_pred CcHHHHHHHHH
Q 000858 1153 YSGSDLKNLCV 1163 (1251)
Q Consensus 1153 ySgaDL~~L~~ 1163 (1251)
. .+++.++++
T Consensus 221 d-lr~al~eLe 230 (620)
T PRK14954 221 S-MRDAQSILD 230 (620)
T ss_pred C-HHHHHHHHH
Confidence 4 344444333
No 175
>PHA02244 ATPase-like protein
Probab=99.13 E-value=7e-10 Score=128.76 Aligned_cols=135 Identities=19% Similarity=0.289 Sum_probs=86.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc----ccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1060 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~----L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1060 (1251)
..|||+||||||||+||++||..++.+|+.++.-. +.+ +..........-|..|.+ .+++||||||+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a----- 192 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDAS----- 192 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcC-----
Confidence 46999999999999999999999999999988421 111 111111122223444433 4689999999977
Q ss_pred CCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-----------CCCcHHHHhcccccccCCCCCHHHHHHHH
Q 000858 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1251)
Q Consensus 1061 ~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-----------~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 1128 (1251)
.+..+..+..++......+.+-....+.++.+|+|+|.+ ..|++++++|| ..+.+..|+ +....|.
T Consensus 193 ~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 193 IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDE-KIEHLIS 269 (383)
T ss_pred CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCc-HHHHHHh
Confidence 222333344444322212222222234679999999973 57899999999 579999998 3333443
No 176
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.12 E-value=4.8e-10 Score=140.34 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=107.1
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 1008 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el------------------ 1008 (1251)
-|.+|+|++.++..|.-.+.. ....+|||+|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 367899999999887654431 112479999999999999999999887
Q ss_pred -----------------CCcEEEEecccccccccCch--HHHH--------HHHHHHHHhcCCceEEEccccccccCCCC
Q 000858 1009 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1251)
Q Consensus 1009 -----------------g~~fi~V~~s~L~s~~~G~s--e~~I--------~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1061 (1251)
..+|+.+.+.......+|.. +..+ ..++..| ..+|||||||+.| +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----C
Confidence 35677766654444444432 1111 1112222 2379999999988 3
Q ss_pred CchHHHHHHHHHhHH--hhccCCcccCCccEEEEEecCCC-CCCcHHHHhcccccccCCCCC-HHHHHHHHHHHHh
Q 000858 1062 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 1133 (1251)
Q Consensus 1062 ~~~~e~~~~il~~LL--~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~l~lPd-~eeR~eIL~~ll~ 1133 (1251)
...+..+..++++-. ...++.....+.+++||+|+|.. ..|.++++.||+..+.++.+. .++|.++++..+.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 333333333333221 12233333334679999999964 468899999999878877664 6788888876543
No 177
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.11 E-value=1.2e-09 Score=126.88 Aligned_cols=164 Identities=16% Similarity=0.254 Sum_probs=101.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 1013 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-------g~~fi------ 1013 (1251)
-|..|+|+++++..|.-.+.. ....++||.|++|+|||+|+++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 377899999999887554431 113579999999999999999999777 33221
Q ss_pred ---EEecc-------------------cc-----cccccCchH--HH--------HHHHHHHHHhcCCceEEEccccccc
Q 000858 1014 ---NISMS-------------------SI-----TSKWFGEGE--KY--------VKAVFSLASKIAPSVVFVDEVDSML 1056 (1251)
Q Consensus 1014 ---~V~~s-------------------~L-----~s~~~G~se--~~--------I~~lF~~A~k~~PsILfIDEID~L~ 1056 (1251)
..+|. ++ ....+|... .. -.+++.. ...++||||||+.|
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhC-
Confidence 00000 00 011222210 00 0112222 23489999999988
Q ss_pred cCCCCCchHHHHHHHHHhHH--hhccCCcccCCccEEEEEecCCCC-CCcHHHHhcccccccCCCCCH-HHHHHHHHHHH
Q 000858 1057 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1132 (1251)
Q Consensus 1057 ~~r~~~~~~e~~~~il~~LL--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd~-eeR~eIL~~ll 1132 (1251)
++..+..+..++.+-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.+..|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3333333333333211 112343333346789999998755 799999999998899988875 88999998743
No 178
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=3.4e-10 Score=133.24 Aligned_cols=201 Identities=23% Similarity=0.283 Sum_probs=136.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 1020 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L- 1020 (1251)
...+..|+|....+.++.+.|.. . ......|||.|.+||||..+|++|.+.. +.||+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-------V-----A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-------V-----AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-------H-----hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 45677899999999998887763 1 2233579999999999999999998877 689999999774
Q ss_pred ----cccccCchHHHHHHHHHHHHhcC--------CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCc
Q 000858 1021 ----TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1251)
Q Consensus 1021 ----~s~~~G~se~~I~~lF~~A~k~~--------PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~ 1088 (1251)
.+..||. .++.|.-|.... .+.||+|||..| +...|..+.+++++--.+.-|.....+.
T Consensus 287 esLlESELFGH----eKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFGH----EKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhcc----cccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 3445553 334444443222 279999999988 5567777888887765554444444467
Q ss_pred cEEEEEecCCCCCCcHHHHh---------cccccccCCCCCHHHHHH----HHHHHHhh----ccc-CChhc---HHHHH
Q 000858 1089 RVLVLAATNRPFDLDEAVVR---------RLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVD---LEGIA 1147 (1251)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlr---------RF~~~I~l~lPd~eeR~e----IL~~ll~k----~~l-~~dvd---l~~LA 1147 (1251)
.|.|||+||+ +|..++.. |+ .++.+.+|...+|.+ +.++|+++ .+. ..... ++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 8999999997 34444444 44 256677788877754 44555554 222 11222 33333
Q ss_pred HHcCCCcHHHHHHHHHHHHhhh
Q 000858 1148 NMADGYSGSDLKNLCVTAAHCP 1169 (1251)
Q Consensus 1148 ~~T~GySgaDL~~L~~~Aa~~a 1169 (1251)
...---+.++|.+++++|+..+
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 3332236699999999999865
No 179
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.10 E-value=5.6e-10 Score=129.47 Aligned_cols=176 Identities=17% Similarity=0.235 Sum_probs=105.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----ccCchH-------HHHHHHHHHHHhcCCceEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGE-------KYVKAVFSLASKIAPSVVFV 1049 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~-----~~G~se-------~~I~~lF~~A~k~~PsILfI 1049 (1251)
..|||+|++||||+++|++|.... +.||+.++|..+... .||... ....++|..|. .++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEEe
Confidence 469999999999999999998766 579999999875322 222111 01122344443 489999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000858 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1122 (1251)
Q Consensus 1050 DEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 1122 (1251)
|||+.| +...+..+.++++.-.....|.....+.++.||++|+.. ..+.+.+..||. .+.+.+|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchh
Confidence 999998 333344444444332211112112223578999999753 245567777884 5677888877
Q ss_pred HHHH----HHHHHHhhc----ccC--ChhcHHHHHHHcC---CCcHHHHHHHHHHHHhhh
Q 000858 1123 NREK----IIRVILAKE----ELA--SDVDLEGIANMAD---GYSGSDLKNLCVTAAHCP 1169 (1251)
Q Consensus 1123 eR~e----IL~~ll~k~----~l~--~dvdl~~LA~~T~---GySgaDL~~L~~~Aa~~a 1169 (1251)
+|.+ +++.++... ... ..+..+.+..+.. .-+.++|+++++.|+..+
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 7754 455555432 111 1233333333322 235588888888887654
No 180
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4.1e-09 Score=131.18 Aligned_cols=183 Identities=20% Similarity=0.262 Sum_probs=129.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1251)
..+|++|+|++.+++.|...+.. .+.+..+|||||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 46899999999999999998762 223456999999999999999999998753
Q ss_pred -----------cEEEEecccccccccCchHHHHHHHHHHHHhcC----CceEEEccccccccCCCCCchHHHHHHHHHhH
Q 000858 1011 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1251)
Q Consensus 1011 -----------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~~~~il~~L 1075 (1251)
+++.+++.. ......++.+...+...+ .-|++|||+|.|- ....+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHH
Confidence 233333221 111345666666554322 2499999999882 1234455
Q ss_pred HhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 000858 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1251)
Q Consensus 1076 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GyS 1154 (1251)
+..++.. ...+++|.+|+.+..+-+.+++|+ ..+.|..++.++-..+++.++.++++. ++..++.|+..+.| +
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d 215 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G 215 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555543 245667777777788999999998 679999999999999999988887765 34457888888866 4
Q ss_pred HHHHHHHHHH
Q 000858 1155 GSDLKNLCVT 1164 (1251)
Q Consensus 1155 gaDL~~L~~~ 1164 (1251)
.+++.+++..
T Consensus 216 lr~al~~Lek 225 (614)
T PRK14971 216 MRDALSIFDQ 225 (614)
T ss_pred HHHHHHHHHH
Confidence 4455444444
No 181
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.08 E-value=6.9e-10 Score=128.56 Aligned_cols=202 Identities=18% Similarity=0.174 Sum_probs=120.8
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 1022 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s- 1022 (1251)
.+++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 3567888888888888776531 1123469999999999999999998665 57999999987632
Q ss_pred ----cccCchHH-------HHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEE
Q 000858 1023 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1251)
Q Consensus 1023 ----~~~G~se~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~Vl 1091 (1251)
.+||.... .....|..| ..++|||||||.| +...+..+..+++.-.....+.....+.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 22332110 012234333 3589999999998 3233333333333211111111111224689
Q ss_pred EEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhc----ccC--ChhcHHHHHHHcC---
Q 000858 1092 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA--SDVDLEGIANMAD--- 1151 (1251)
Q Consensus 1092 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~----~l~--~dvdl~~LA~~T~--- 1151 (1251)
||++|+.. ..+.+.+..||. .+.+.+|...+|.+ ++++++... ... ..++-+.+..+..
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~W 222 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRW 222 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCC
Confidence 99998763 356677777883 46777888777754 555555432 111 2233344333332
Q ss_pred CCcHHHHHHHHHHHHhhh
Q 000858 1152 GYSGSDLKNLCVTAAHCP 1169 (1251)
Q Consensus 1152 GySgaDL~~L~~~Aa~~a 1169 (1251)
--+.++|+++++.|+..+
T Consensus 223 PGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 223 PGNIRELKNVVERSVYRH 240 (326)
T ss_pred CcHHHHHHHHHHHHHHhc
Confidence 235578888888887643
No 182
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.06 E-value=4.4e-10 Score=100.32 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=58.8
Q ss_pred eEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEEc
Q 000858 154 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1251)
Q Consensus 154 ~t~G~~~~cd~~~~d~~~s~~~c~l~~~~~~~~~~a~le~~-~~~g~v~vNg~~~~k~~~~~L~~gdev~f~ 224 (1251)
|+|||+..||+.|+++.+|..||.|...+. ..++|++. +.||| +|||+.+.++..+.|..||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt-~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGT-FVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-E-EETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcE-EECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999997643 33899997 58888 799999999999999999999985
No 183
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.7e-10 Score=132.58 Aligned_cols=113 Identities=23% Similarity=0.360 Sum_probs=99.4
Q ss_pred CccceeccccCCCCceeeecceeEEccCCccceeecCCCCCccceEEEEe----------e-cCCcceEEEEEecCCceE
Q 000858 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRI----------E-NGGPSGALLEITGGKGEV 200 (1251)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~~~d~~~s~~~c~l~~~----------~-~~~~~~a~le~~~~~g~v 200 (1251)
.||+||+-..-..+++.+.+.+|||||+..||+.++.+.+|+.|-++... . .+.+..+||+|+++|||
T Consensus 44 ~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT- 122 (475)
T KOG0615|consen 44 KPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGT- 122 (475)
T ss_pred cchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcc-
Confidence 48999999999999999999999999999999999999999888754432 2 34456899999999999
Q ss_pred EEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCcccCCCCC
Q 000858 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPG 245 (1251)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gdev~f~~~~~~ayif~~l~~~~~~~~~ 245 (1251)
+||-+.++||....|+|||||.++.+.+++++|.+++.+....+.
T Consensus 123 ~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d~~~~~p 167 (475)
T KOG0615|consen 123 FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRDSSKVPP 167 (475)
T ss_pred cccHhHhhccccccccCCCEEEeccchhheeeeecccchhccCcc
Confidence 699999999999999999999999999999999999666544443
No 184
>PRK09087 hypothetical protein; Validated
Probab=99.05 E-value=5.1e-09 Score=115.47 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=93.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCch
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1064 (1251)
+.++|+||+|+|||+|+++++...++.++... .+.. .++..... .+|+|||++.+- ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 35999999999999999999988776544332 2111 11121111 589999999761 22
Q ss_pred HHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--ccccCCCCCHHHHHHHHHHHHhhcccC-
Q 000858 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 1138 (1251)
Q Consensus 1065 ~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eIL~~ll~k~~l~- 1138 (1251)
++.+..+++.+.. .++.+||+++..|.. ..+.+++||. .++.+..|+.++|.++++..+....+.
T Consensus 103 ~~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3445555555442 134566666655432 3578899885 588899999999999999999876553
Q ss_pred ChhcHHHHHHHcCC
Q 000858 1139 SDVDLEGIANMADG 1152 (1251)
Q Consensus 1139 ~dvdl~~LA~~T~G 1152 (1251)
++..++.|++...|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 56667888887763
No 185
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.03 E-value=8.8e-10 Score=134.78 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=122.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s 1022 (1251)
.+|++|+|.....+.+.+.+.. +. .....|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YA-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688999999988888887753 11 123579999999999999999998765 67999999987532
Q ss_pred -----cccCchHH--------HHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCcc
Q 000858 1023 -----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1251)
Q Consensus 1023 -----~~~G~se~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~ 1089 (1251)
..||..+. .-..+|+.|. .+.||||||+.| +...+..+.+++++-....-|.....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 23332211 1223555554 389999999998 43444444444443221111111112346
Q ss_pred EEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhccc--CChhcHHH----------H
Q 000858 1090 VLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEEL--ASDVDLEG----------I 1146 (1251)
Q Consensus 1090 VlVIaTTN~p~-------~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~~l--~~dvdl~~----------L 1146 (1251)
+.||++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++..++.+... .-....+. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 78999997642 2333444455 357778888877764 55566654321 01122222 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhh
Q 000858 1147 ANMADGYSGSDLKNLCVTAAHC 1168 (1251)
Q Consensus 1147 A~~T~GySgaDL~~L~~~Aa~~ 1168 (1251)
....=.-+.++|++++++++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2221122558899999888764
No 186
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.03 E-value=1.3e-09 Score=133.45 Aligned_cols=202 Identities=20% Similarity=0.290 Sum_probs=123.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 1014 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~e-----------lg~~fi~ 1014 (1251)
.+|++|+|.....+.+++.+.. +. .....|||+|++||||+++|++|.+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YA-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3688899999988888887753 11 12357999999999999999999887 3679999
Q ss_pred Eecccccc-----cccCchHH--------HHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccC
Q 000858 1015 ISMSSITS-----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1251)
Q Consensus 1015 V~~s~L~s-----~~~G~se~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldg 1081 (1251)
++|+.+.. ..||..+. .-..+|+.|. .+.||||||+.| +...+..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 23342211 1123555554 389999999998 434444444444432211112
Q ss_pred CcccCCccEEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhc--ccCChhcHH----
Q 000858 1082 LRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE--ELASDVDLE---- 1144 (1251)
Q Consensus 1082 l~~k~~~~VlVIaTTN~p~-------~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~--~l~~dvdl~---- 1144 (1251)
.....+.++.||++|+..- .+.+.+..|+ ..+.+.+|...+|.+ +++.++.+. .......-+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 2122235679999997641 2333444466 357788888877764 556666542 111111111
Q ss_pred ------HHHHHcCCCcHHHHHHHHHHHHhh
Q 000858 1145 ------GIANMADGYSGSDLKNLCVTAAHC 1168 (1251)
Q Consensus 1145 ------~LA~~T~GySgaDL~~L~~~Aa~~ 1168 (1251)
.|....=.-+.++|++++++++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 111111122558999999988763
No 187
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.03 E-value=5.8e-10 Score=137.17 Aligned_cols=210 Identities=20% Similarity=0.229 Sum_probs=124.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~ 1021 (1251)
..+|++|+|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 357889999999988888877531 1123469999999999999999999875 5799999998763
Q ss_pred cc-----ccCchHHH-------HHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCcc
Q 000858 1022 SK-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1251)
Q Consensus 1022 s~-----~~G~se~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~ 1089 (1251)
.. .||..... ..+.|..| ..++||||||+.| +...+..+.+++.+-.....+.....+.+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 22 22211100 01123333 3589999999998 33333333333332111111111111246
Q ss_pred EEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHH----HHHHHHHhhcc----cCChhc---HHHHHHHcC
Q 000858 1090 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----LASDVD---LEGIANMAD 1151 (1251)
Q Consensus 1090 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~----eIL~~ll~k~~----l~~dvd---l~~LA~~T~ 1151 (1251)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|. .|+++++.+.. ....++ +..|....=
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 8899998753 245556666773 5666777766653 46666665422 111223 333443332
Q ss_pred CCcHHHHHHHHHHHHhhhhHHHHH
Q 000858 1152 GYSGSDLKNLCVTAAHCPIREILE 1175 (1251)
Q Consensus 1152 GySgaDL~~L~~~Aa~~airriie 1175 (1251)
.-+.++|+++++.|+..+-...+.
T Consensus 411 PGNvrEL~~v~~~a~~~~~~~~I~ 434 (534)
T TIGR01817 411 PGNVRELENCLERTATLSRSGTIT 434 (534)
T ss_pred CChHHHHHHHHHHHHHhCCCCccc
Confidence 335689999999888655443343
No 188
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1e-08 Score=120.52 Aligned_cols=200 Identities=22% Similarity=0.267 Sum_probs=129.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEeccccccc-
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSK- 1023 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-----~fi~V~~s~L~s~- 1023 (1251)
.+.+.++.++++...+.-.+. + . .|.+++|+|+||||||.+++.++.++.- .++++||..+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~-~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--E-RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--C-CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 478889999999887653222 1 2 2346999999999999999999998833 3899998553222
Q ss_pred --------------ccCch-HHHHHHHHHHHHh-cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCC
Q 000858 1024 --------------WFGEG-EKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1251)
Q Consensus 1024 --------------~~G~s-e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~ 1087 (1251)
..|.. ......+++...+ ...-||+|||+|.|+.+.. .++-.|....... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~----~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN----K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc----c
Confidence 11111 2233334443333 3456889999999964432 3444444333222 4
Q ss_pred ccEEEEEecCCC---CCCcHHHHhccc-ccccCCCCCHHHHHHHHHHHHhhc---ccCChhcHHHHHHHcCCC--cHHHH
Q 000858 1088 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGY--SGSDL 1158 (1251)
Q Consensus 1088 ~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~l~lPd~eeR~eIL~~ll~k~---~l~~dvdl~~LA~~T~Gy--SgaDL 1158 (1251)
.++.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|...|++...... ...++..++.+|....-. ..+-.
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~a 234 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKA 234 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHH
Confidence 778999999876 477888888764 458999999999999999887642 222333344444433322 33344
Q ss_pred HHHHHHHHhhhhHH
Q 000858 1159 KNLCVTAAHCPIRE 1172 (1251)
Q Consensus 1159 ~~L~~~Aa~~airr 1172 (1251)
..+|+.|+..|-++
T Consensus 235 idilr~A~eiAe~~ 248 (366)
T COG1474 235 IDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHhh
Confidence 46777777766654
No 189
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.02 E-value=1.9e-09 Score=132.04 Aligned_cols=204 Identities=17% Similarity=0.231 Sum_probs=125.1
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 1022 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s- 1022 (1251)
.+.+++|....++.+.+.+.. + ......|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-------~-----a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-------V-----AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 456788998888888887763 1 1123579999999999999999998875 57999999987642
Q ss_pred ----cccCchHH-------HHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEE
Q 000858 1023 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1251)
Q Consensus 1023 ----~~~G~se~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~Vl 1091 (1251)
..||.... .....|..|. .+.|||||||.| +...+..+.+++++-....-+-....+.++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 22332111 0112344443 489999999998 3333444433333221111111111235789
Q ss_pred EEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcc----c-CChhcHHH---HHHHcCC
Q 000858 1092 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L-ASDVDLEG---IANMADG 1152 (1251)
Q Consensus 1092 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~~----l-~~dvdl~~---LA~~T~G 1152 (1251)
||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ ++++++.+.. . ...+.-+. |....=-
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999764 245566666763 56788888877754 4455554421 1 12233333 3333223
Q ss_pred CcHHHHHHHHHHHHhhhhH
Q 000858 1153 YSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1153 ySgaDL~~L~~~Aa~~air 1171 (1251)
.+.++|+++++.|+..+..
T Consensus 404 GNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 404 GNVRELEHVISRAALLARA 422 (509)
T ss_pred CcHHHHHHHHHHHHHhcCC
Confidence 3668999999999876543
No 190
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.01 E-value=1.5e-09 Score=125.74 Aligned_cols=161 Identities=25% Similarity=0.373 Sum_probs=107.0
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--ccccCch
Q 000858 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEG 1028 (1251)
Q Consensus 951 I~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~--s~~~G~s 1028 (1251)
+.|.++++..+...+.. ..++||.||||||||+||+++|..++.+|+.+.|..-+ +..+|..
T Consensus 26 ~~g~~~~~~~~l~a~~~----------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLA----------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHc----------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 55666666665544431 24799999999999999999999999999999986422 1222221
Q ss_pred HHHHH----HHHHHHHh-cCC---ceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCc-ccCCccEEEEEecC--
Q 000858 1029 EKYVK----AVFSLASK-IAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATN-- 1097 (1251)
Q Consensus 1029 e~~I~----~lF~~A~k-~~P---sILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~-~k~~~~VlVIaTTN-- 1097 (1251)
.-... ..|..... .-. +|+|+|||++. ++..+..+..++++....+.+.. ..-+.+++||+|+|
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEeccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 11110 00100000 001 49999999865 45556666667776666666666 55567899999999
Q ss_pred ---CCCCCcHHHHhcccccccCCCCC-HHHHHHHHHHHH
Q 000858 1098 ---RPFDLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 1132 (1251)
Q Consensus 1098 ---~p~~Ld~aLlrRF~~~I~l~lPd-~eeR~eIL~~ll 1132 (1251)
....|++++++||...+.++.|+ .++...++....
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 45678999999998899999994 444555544443
No 191
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.00 E-value=9.8e-10 Score=137.92 Aligned_cols=203 Identities=19% Similarity=0.241 Sum_probs=121.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 1021 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~- 1021 (1251)
.+|++|+|.....+.+.+.+... ......|||+|++||||+++|++|.+.. +.||+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA------------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46889999888888777766521 1122459999999999999999998876 5799999998753
Q ss_pred ----ccccCch----HHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEE
Q 000858 1022 ----SKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1251)
Q Consensus 1022 ----s~~~G~s----e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVI 1093 (1251)
+.++|.. .......|+.| ..++||||||+.| +...+..+.+++++-....-+.....+.++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2334421 00011123333 3589999999998 333444444444322111111111112468899
Q ss_pred EecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcc----cC---ChhcHHHHHHHcCCCcH
Q 000858 1094 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA---SDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1094 aTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~~----l~---~dvdl~~LA~~T~GySg 1155 (1251)
+||+.. ..+.+.+.-|+ ..+.+.+|...+|.+ +++.++.+.. .. ++..++.|....=.-+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 999763 23444555566 357788888888753 5555555421 11 22223334333323356
Q ss_pred HHHHHHHHHHHhhh
Q 000858 1156 SDLKNLCVTAAHCP 1169 (1251)
Q Consensus 1156 aDL~~L~~~Aa~~a 1169 (1251)
++|+++++.|+..+
T Consensus 541 reL~~~l~~~~~~~ 554 (638)
T PRK11388 541 FELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999887654
No 192
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.99 E-value=3.4e-09 Score=134.14 Aligned_cols=205 Identities=20% Similarity=0.275 Sum_probs=124.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s 1022 (1251)
..|++++|....++.+.+.+.. + ......|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~-------~-----a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM-------V-----AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 4678899999888888776653 1 1122469999999999999999998765 67999999987532
Q ss_pred -----cccCchH-------HHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccE
Q 000858 1023 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1251)
Q Consensus 1023 -----~~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~V 1090 (1251)
..+|... ......|..|. .++||||||+.| +...+..+.+++++-.....+.......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2333211 11123444443 489999999988 333344444443332111111111223578
Q ss_pred EEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcc----cC----ChhcHHHHHHHcC
Q 000858 1091 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA----SDVDLEGIANMAD 1151 (1251)
Q Consensus 1091 lVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~~----l~----~dvdl~~LA~~T~ 1151 (1251)
.||++|+.. ..+...+..|+ ..+.+.+|...+|.+ +++.++.+.. .. +...++.|....=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999764 23344455565 356788888888765 5555555421 11 2222333333322
Q ss_pred CCcHHHHHHHHHHHHhhhhH
Q 000858 1152 GYSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1152 GySgaDL~~L~~~Aa~~air 1171 (1251)
--+.++|++++++|+..+-.
T Consensus 592 PGNvrEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 592 PGNVRELENVIERAVLLTRG 611 (686)
T ss_pred CCcHHHHHHHHHHHHHhCCC
Confidence 33568999999998865443
No 193
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.99 E-value=1.3e-08 Score=110.74 Aligned_cols=191 Identities=23% Similarity=0.314 Sum_probs=135.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~ 1021 (1251)
...+.+|.|.+.+++.|.+... .|.++ .|.++|||+|..||||++|++|+.++. +..+|+|+-.+|.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~-------~F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTE-------QFAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHH-------HHHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3678899999999999987654 34443 477899999999999999999998887 6678888866653
Q ss_pred ccccCchHHHHHHHHHHHHhcC-CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1022 SKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1022 s~~~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
.+-.+++..+..+ .-|||+|++- | ..++ . ....+-..++|--...+.+|+|.||+|+.+
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLS--F----e~gd-~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLS--F----EEGD-D----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCC--C----CCCc-h----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 3455666665443 4799999983 1 1111 1 223344556776666778999999999866
Q ss_pred CCcH----------------------HHHhcccccccCCCCCHHHHHHHHHHHHhhcccCC-hhcH--H--HHHHHcCCC
Q 000858 1101 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDL--E--GIANMADGY 1153 (1251)
Q Consensus 1101 ~Ld~----------------------aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~-dvdl--~--~LA~~T~Gy 1153 (1251)
.|.+ .+-.||+..+.|.+++.++-..|+..+.+...+.- +..+ + ..|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5542 23338999999999999999999999999887663 3222 2 233444577
Q ss_pred cHHHHHHHHHHH
Q 000858 1154 SGSDLKNLCVTA 1165 (1251)
Q Consensus 1154 SgaDL~~L~~~A 1165 (1251)
||+--.+.++..
T Consensus 266 SGR~A~QF~~~~ 277 (287)
T COG2607 266 SGRVAWQFIRDL 277 (287)
T ss_pred ccHhHHHHHHHH
Confidence 776555554443
No 194
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.8e-09 Score=131.86 Aligned_cols=182 Identities=21% Similarity=0.377 Sum_probs=135.6
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V~ 1016 (1251)
.++-++|.++-+..+.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456688998888888887752 122467899999999999999999876 56788899
Q ss_pred cccccc--cccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCch-HHHHHHHHHhHHhhccCCcccCCccEEEE
Q 000858 1017 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1251)
Q Consensus 1017 ~s~L~s--~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~e~~~~il~~LL~~ldgl~~k~~~~VlVI 1093 (1251)
+..+.. +|-|+.|..++.+..+..+..+.||||||||.+.+.....+. -.+.+ ++.-.+ .++.+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaL---------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPAL---------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHH---------hcCCeEEE
Confidence 888763 688999999999999999988999999999999987654332 22222 222221 23668888
Q ss_pred EecCC-----CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCC
Q 000858 1094 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1153 (1251)
Q Consensus 1094 aTTN~-----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-----~dvdl~~LA~~T~Gy 1153 (1251)
|+|.. ...-|+++-||| ..|.+..|+.++-..||+-+-.++... .|..+...+.++.-|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 88853 346789999999 688999999999999999877664322 344455555555444
No 195
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.98 E-value=2.1e-08 Score=118.18 Aligned_cols=169 Identities=20% Similarity=0.314 Sum_probs=114.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccC
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1058 (1251)
.+.++||||.|.|||+|++|++++. +..++.+....+...++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3569999999999999999999887 34577777666555443322222223455444 4579999999998644
Q ss_pred CCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCC---CcHHHHhcccc--cccCCCCCHHHHHHHHHHHHh
Q 000858 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 1133 (1251)
Q Consensus 1059 r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~~--~I~l~lPd~eeR~eIL~~ll~ 1133 (1251)
.. .++....+++.+... ++-+|+.+-..|.. +.+.+++||.. ++.+.+|+.+.|..|++....
T Consensus 191 ~~---~qeefFh~FN~l~~~---------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLEN---------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHhc---------CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 255666666666422 34455555555654 45899999865 677889999999999999777
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000858 1134 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1134 k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~ 1167 (1251)
...+. ++..+..||..... +.++|..++.....
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~ 292 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDA 292 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHH
Confidence 76554 55567777777653 56666665555443
No 196
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.4e-08 Score=118.89 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=121.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE--
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI-- 1015 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------~fi~V-- 1015 (1251)
...|++|+|++.+.+.|...+.. .+-+..+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999998763 233457999999999999999999999854 11100
Q ss_pred --ec-----------cccc--ccccC---------chHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHH
Q 000858 1016 --SM-----------SSIT--SKWFG---------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 1067 (1251)
Q Consensus 1016 --~~-----------s~L~--s~~~G---------~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~ 1067 (1251)
.| +++. ....+ -.-..++.+...... ...-||+|||+|.| +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~------ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----N------ 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----C------
Confidence 11 0111 00000 011234443333322 23469999999988 2
Q ss_pred HHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHH
Q 000858 1068 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1147 (1251)
Q Consensus 1068 ~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA 1147 (1251)
....+.++..++.. +.+.++|..|+.++.+.+.+++|+ ..+.+++|+.++-..+++....... .++..+..++
T Consensus 155 -~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 155 -RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred -HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 12234455555542 244566666777888899999999 6999999999999999987543322 2244467777
Q ss_pred HHcCCCcHHHHHHHHHH
Q 000858 1148 NMADGYSGSDLKNLCVT 1164 (1251)
Q Consensus 1148 ~~T~GySgaDL~~L~~~ 1164 (1251)
..+.|..... .+++..
T Consensus 228 ~~s~G~pr~A-l~ll~~ 243 (351)
T PRK09112 228 QRSKGSVRKA-LLLLNY 243 (351)
T ss_pred HHcCCCHHHH-HHHHhc
Confidence 8777754443 344443
No 197
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.97 E-value=2.5e-09 Score=131.20 Aligned_cols=206 Identities=22% Similarity=0.290 Sum_probs=123.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~ 1021 (1251)
..+|++++|.....+.+.+.+.. +.. ....|||+|++||||+++|++|.... +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45899999998887777766542 111 12459999999999999999987665 4799999998764
Q ss_pred cc-----ccCchH-------HHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCcc
Q 000858 1022 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1251)
Q Consensus 1022 s~-----~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~ 1089 (1251)
.. .||... ....++|+.|. .+.||||||+.| +...+..+.++++.-...-.+-......+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 233211 11123455544 489999999998 33344444444332111111111112356
Q ss_pred EEEEEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhh----ccc-CChhcHHHHHHHcC-C
Q 000858 1090 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVDLEGIANMAD-G 1152 (1251)
Q Consensus 1090 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k----~~l-~~dvdl~~LA~~T~-G 1152 (1251)
+.||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ +++.++.+ ... ...+..+.+..+.. .
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 8899988653 235566777774 47788888777763 44445443 221 12333344444332 2
Q ss_pred C--cHHHHHHHHHHHHhhhhH
Q 000858 1153 Y--SGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1153 y--SgaDL~~L~~~Aa~~air 1171 (1251)
| +.++|++++.+|+..+-.
T Consensus 419 WPGNvreL~nvl~~a~~~~~~ 439 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQLEG 439 (520)
T ss_pred CCCHHHHHHHHHHHHHHhCCC
Confidence 2 557888888888765433
No 198
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=98.97 E-value=2.5e-09 Score=101.45 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=81.8
Q ss_pred cceeccccC--CCCceeeec-ceeEEccCCcc-ceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCC
Q 000858 134 WARLISQCS--QNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (1251)
Q Consensus 134 W~rL~s~~~--~~p~~~i~~-~~~t~G~~~~c-d~~~~d~~~s~~~c~l~~~~~~~~~~a~le~~~~~g~v~vNg~~~~k 209 (1251)
|+.|.++.. ..+.+.|.. ..|+|||+..| |+.|.++.+|..||.|.....+ ...+++..+.||+ +|||+.+.+
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~-~vn~~~~~~ 77 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGT-FVNGQRVSP 77 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCe-EECCEECCC
Confidence 566777765 567888888 99999999999 9999999999999999976433 3478889999999 699999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEee
Q 000858 210 DSQVVLRGGDELVFSPSGKHSYIFQ 234 (1251)
Q Consensus 210 ~~~~~L~~gdev~f~~~~~~ayif~ 234 (1251)
+.+++|..||+|.|+. +.+.|.|+
T Consensus 78 ~~~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECC-eEEEEEEe
Confidence 9999999999999976 45555554
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.96 E-value=6.1e-09 Score=112.49 Aligned_cols=186 Identities=23% Similarity=0.308 Sum_probs=123.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C----CcEEEEeccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSS 1019 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-g----~~fi~V~~s~ 1019 (1251)
...+.||+|.++..+.|.-... .+ .. .+++|.||||+|||+-+.++|+++ | --+.++++++
T Consensus 23 P~~l~dIVGNe~tv~rl~via~-----------~g-nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK-----------EG-NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH-----------cC-CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 3467899999999999877554 22 22 389999999999999999999998 4 2356677665
Q ss_pred ccccccCchHHHHHHHHHHHH-hcCC---ceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEe
Q 000858 1020 ITSKWFGEGEKYVKAVFSLAS-KIAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1251)
Q Consensus 1020 L~s~~~G~se~~I~~lF~~A~-k~~P---sILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaT 1095 (1251)
-.+- +.-...+ ..|.+-+ ..+| .||++||.|++ ..+.+.++++.+.-.. ....+..+
T Consensus 89 eRGI--DvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFala 149 (333)
T KOG0991|consen 89 ERGI--DVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALA 149 (333)
T ss_pred cccc--HHHHHHH-HHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhh
Confidence 3221 1111122 2333332 2233 49999999998 4566778888776432 23567788
Q ss_pred cCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000858 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1251)
Q Consensus 1096 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~ 1164 (1251)
+|..+.+-+.+.+|+ -.+.+...+..+...=+....+.+.+. .+..++.+....+|-....|.+|-..
T Consensus 150 CN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 150 CNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQST 218 (333)
T ss_pred hcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHH
Confidence 899888888888887 355565556555554444444555444 45567777777777766666666443
No 200
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=2.3e-08 Score=115.18 Aligned_cols=172 Identities=18% Similarity=0.288 Sum_probs=115.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecc
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMS 1018 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~--------fi~V~~s 1018 (1251)
+|++|.|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999887752 2234578999999999999999999987332 2233221
Q ss_pred cccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEE
Q 000858 1019 SITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1251)
Q Consensus 1019 ~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIa 1094 (1251)
.+.. ..-..++.+...+... ..-|++||++|.| + ....+.|+..++.. +..+++|.
T Consensus 69 --~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----~-------~~a~naLLK~LEep----p~~t~~il 128 (313)
T PRK05564 69 --NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----T-------EQAQNAFLKTIEEP----PKGVFIIL 128 (313)
T ss_pred --cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----C-------HHHHHHHHHHhcCC----CCCeEEEE
Confidence 1111 1223466655544332 2359999999988 2 12345566666542 34566666
Q ss_pred ecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 000858 1095 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1095 TTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySg 1155 (1251)
+|+.++.+.+++++|+ ..+.+..|+.++-..++...+.. .++..+..++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 7777899999999999 68999999998887777655431 223445566666666433
No 201
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.8e-09 Score=118.48 Aligned_cols=116 Identities=26% Similarity=0.435 Sum_probs=80.3
Q ss_pred Cccc-ccCcHHHHHHHHHHHHcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-c
Q 000858 947 TFDD-IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-K 1023 (1251)
Q Consensus 947 tfdd-I~Gle~vk~~L~e~V~~pl~~pelf~k-~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s-~ 1023 (1251)
.+++ ++|++..|+.|--+|....+|-..... ..+.-...+|||.||+|||||+||+.+|+.++.||..-++..|.. .
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 3444 788888888876655543322211111 111112247999999999999999999999999999999988764 5
Q ss_pred ccCch-HHHHHHHHHHH----HhcCCceEEEccccccccCCCCC
Q 000858 1024 WFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENP 1062 (1251)
Q Consensus 1024 ~~G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~ 1062 (1251)
|+|+. |..+..+...| .+...+||||||||.+..+..++
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~ 181 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENP 181 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCC
Confidence 77775 44555565544 23456999999999998665443
No 202
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.94 E-value=2.3e-08 Score=113.76 Aligned_cols=129 Identities=22% Similarity=0.315 Sum_probs=82.9
Q ss_pred CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC------------CCCCcHHHHhccc
Q 000858 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 1111 (1251)
Q Consensus 1044 PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF~ 1111 (1251)
|+||||||++.| +- ..+..++. .+.. +-.+ +||.+||+ |+-++..++.|+
T Consensus 292 pGVLFIDEvHmL-----DI----E~FsFlnr---AlEs----e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHML-----DI----ECFSFLNR---ALES----ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhh-----hH----HHHHHHHH---Hhhc----ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 789999999877 11 11222222 2221 1133 45555654 788999999998
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 000858 1112 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1190 (1251)
Q Consensus 1112 ~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~ 1190 (1251)
.+|...+.+.++-.+|++.....+.+. ++..++.|+..-..-+-+--.+|+.-|...|-++
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 577788889999999999998887655 4555777777665555555555555555444333
Q ss_pred CCCCCCccccccccHHHHHHHHHHhc
Q 000858 1191 SPPLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1191 ~~~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
....|..+|++.|.+-+.
T Consensus 416 --------g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 --------GSKRVEVEDVERAKELFL 433 (450)
T ss_pred --------CCCeeehhHHHHHHHHHh
Confidence 124578888888876543
No 203
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=2.4e-10 Score=115.36 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=68.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------cccccCc--hHHHHHHHHHHHHhcCCceEEEcccccccc
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGE--GEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L------~s~~~G~--se~~I~~lF~~A~k~~PsILfIDEID~L~~ 1057 (1251)
+|||+||||||||+||+.+|+.++.+++.+.+... .+.+.-. ........+..+.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 58999999999999999999999999999888652 2211100 00000011111111 4689999999875
Q ss_pred CCCCCchHHHHHHHHHhHHhhccCCcc---------cCCc------cEEEEEecCCCC----CCcHHHHhcc
Q 000858 1058 RRENPGEHEAMRKMKNEFMVNWDGLRT---------KDKE------RVLVLAATNRPF----DLDEAVVRRL 1110 (1251)
Q Consensus 1058 ~r~~~~~~e~~~~il~~LL~~ldgl~~---------k~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1110 (1251)
+ ..++..++..++.-.. .... ++.||+|+|+.. .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 2233333333332110 0111 499999999988 9999999998
No 204
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.92 E-value=1.9e-08 Score=117.54 Aligned_cols=169 Identities=24% Similarity=0.335 Sum_probs=109.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec-
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISM- 1017 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-------g~~fi~V~~- 1017 (1251)
..|.-+.|++..+..|.-... ...-.|+||.|+.|||||+++++|+.-+ |++|- ++.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~-cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFN-CDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCC-CCCC
Confidence 356678999999888754321 2223579999999999999999999887 23220 000
Q ss_pred -c------------------------cccccccCchHH----------HHHH---HHH--HHHhcCCceEEEcccccccc
Q 000858 1018 -S------------------------SITSKWFGEGEK----------YVKA---VFS--LASKIAPSVVFVDEVDSMLG 1057 (1251)
Q Consensus 1018 -s------------------------~L~s~~~G~se~----------~I~~---lF~--~A~k~~PsILfIDEID~L~~ 1057 (1251)
+ .+...-.+.++. .++. .|+ ...+...+||||||+..|
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-- 156 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-- 156 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc--
Confidence 0 011111222222 1111 111 011112389999999988
Q ss_pred CCCCCchHHHHHHHHHhH--HhhccCCcccCCccEEEEEecCCC-CCCcHHHHhcccccccCCCC-CHHHHHHHHHHHHh
Q 000858 1058 RRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVILA 1133 (1251)
Q Consensus 1058 ~r~~~~~~e~~~~il~~L--L~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~l~lP-d~eeR~eIL~~ll~ 1133 (1251)
....+..+..++..- ..+.+|+....+.++++|+|+|+- ..|-+-|+.||...+.+..| +.++|.+|++.-+.
T Consensus 157 ---~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 157 ---DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ---cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 333344444444442 345667777777899999999986 47889999999988888665 58999999988776
Q ss_pred h
Q 000858 1134 K 1134 (1251)
Q Consensus 1134 k 1134 (1251)
.
T Consensus 234 f 234 (423)
T COG1239 234 F 234 (423)
T ss_pred h
Confidence 5
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=6e-09 Score=101.32 Aligned_cols=127 Identities=33% Similarity=0.464 Sum_probs=81.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccccc--------------ccCchHHHHHHHHHHHHhcCCceE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 1047 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~---fi~V~~s~L~s~--------------~~G~se~~I~~lF~~A~k~~PsIL 1047 (1251)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 788877653321 123345567788999998888999
Q ss_pred EEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC-CCCCcHHHHhcccccccCCCC
Q 000858 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 1119 (1251)
Q Consensus 1048 fIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~l~lP 1119 (1251)
||||++.+..... ............... ........+|+++|. ....+..+.+|++..+.+..+
T Consensus 83 iiDei~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-----EALLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-----HHHHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999998842211 111000000000000 011255788888886 444555566577766666443
No 206
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.91 E-value=1.1e-08 Score=127.10 Aligned_cols=142 Identities=18% Similarity=0.297 Sum_probs=93.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccccCchH--HHHH--------HHHHHHHhcCCceEEEcc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK--------AVFSLASKIAPSVVFVDE 1051 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~elg--~~fi~V~~s~L~s~~~G~se--~~I~--------~lF~~A~k~~PsILfIDE 1051 (1251)
..+|||.|+||||||++|++|+..+. .+|+.+.........+|... ..+. +++.. ...+||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEeccc
Confidence 35799999999999999999999875 46888875433333444321 0000 01111 2237999999
Q ss_pred ccccccCCCCCchHHHHHHHHHhHHhhc--cCCcccCCccEEEEEecCCCC---CCcHHHHhcccccccCC-CCCHHHHH
Q 000858 1052 VDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNRE 1125 (1251)
Q Consensus 1052 ID~L~~~r~~~~~~e~~~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~I~l~-lPd~eeR~ 1125 (1251)
|+.+ ++..+..+..++++-...+ +|.....+.+++||+|+|..+ .|.++++.||...+.+. +|+.++|.
T Consensus 93 i~rl-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 93 ANLL-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred hhhC-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 9988 3333444444443322212 233333346789999999865 78999999999766664 56788899
Q ss_pred HHHHHHHh
Q 000858 1126 KIIRVILA 1133 (1251)
Q Consensus 1126 eIL~~ll~ 1133 (1251)
+|++.++.
T Consensus 168 eil~~~~~ 175 (589)
T TIGR02031 168 EIVRRERC 175 (589)
T ss_pred HHHHHHHH
Confidence 99988763
No 207
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.90 E-value=2.2e-08 Score=122.74 Aligned_cols=175 Identities=23% Similarity=0.289 Sum_probs=102.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEE---eccccccccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINI---SMSSITSKWF 1025 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-~fi~V---~~s~L~s~~~ 1025 (1251)
.|.|++.++..|.-.+.-... +. ...+...+...+|||+|+||||||++|+++++.+.. .|+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~-~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KN-LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cc-cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 578999988777554432110 00 011111222347999999999999999999998743 33321 2222211111
Q ss_pred Cc---hHHHH-HHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhc--cCCcccCCccEEEEEecCCC
Q 000858 1026 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1026 G~---se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p 1099 (1251)
.. .+..+ .+.+..| ..++++|||++.+ ++..+..+..++.+-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00 00000 0111222 3489999999988 3333344433333222111 23333345689999999975
Q ss_pred C-------------CCcHHHHhcccccc-cCCCCCHHHHHHHHHHHHhh
Q 000858 1100 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1100 ~-------------~Ld~aLlrRF~~~I-~l~lPd~eeR~eIL~~ll~k 1134 (1251)
+ .|++++++||+..+ .++.|+.+.+.+|.++.+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 3 68999999998754 44789999999999987653
No 208
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=2.7e-08 Score=117.01 Aligned_cols=179 Identities=19% Similarity=0.144 Sum_probs=117.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----------E
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------I 1013 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f-----------i 1013 (1251)
..++++|+|++.+++.|.+.+.. .+-+..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 45789999999999999998763 23446799999999999999999999883211 0
Q ss_pred E---E-ec-----------ccccccc---cC--------chHHHHHHHHHHHH----hcCCceEEEccccccccCCCCCc
Q 000858 1014 N---I-SM-----------SSITSKW---FG--------EGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 1063 (1251)
Q Consensus 1014 ~---V-~~-----------s~L~s~~---~G--------~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~ 1063 (1251)
. + .| +++.--. -+ ..-..++.+...+. ...+-||+|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 0 0 00 1111000 01 01233555554443 234679999999987 2
Q ss_pred hHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcH
Q 000858 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 1143 (1251)
Q Consensus 1064 ~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl 1143 (1251)
....+.|+..++.. ....++|.+|+.++.+.+.+++|+ ..+.|+.|+.++-.+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 22344555555542 245677788888888999999998 68999999999998888765321 122223
Q ss_pred HHHHHHcCCCcHH
Q 000858 1144 EGIANMADGYSGS 1156 (1251)
Q Consensus 1144 ~~LA~~T~GySga 1156 (1251)
..++..+.|-.+.
T Consensus 222 ~~l~~~s~Gsp~~ 234 (365)
T PRK07471 222 AALAALAEGSVGR 234 (365)
T ss_pred HHHHHHcCCCHHH
Confidence 5677777765443
No 209
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.89 E-value=8.3e-10 Score=119.28 Aligned_cols=46 Identities=43% Similarity=0.666 Sum_probs=36.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
+|.||.|++.+|..|.-+.. + ..+|||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999977664 1 2589999999999999999998655
No 210
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.88 E-value=2.2e-08 Score=124.71 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=42.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~ 1011 (1251)
.-|+++.|+++++..++..+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4577899999999998887752 1379999999999999999999988543
No 211
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.87 E-value=3.1e-08 Score=105.60 Aligned_cols=144 Identities=18% Similarity=0.203 Sum_probs=96.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecccccccccCchHHHHHHHHHH
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1038 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------------------fi~V~~s~L~s~~~G~se~~I~~lF~~ 1038 (1251)
.+..+||+||+|+|||++|+++++.+... +..+... +.. .....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHH
Confidence 34679999999999999999999987432 2222111 000 123456666666
Q ss_pred HHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccc
Q 000858 1039 ASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1114 (1251)
Q Consensus 1039 A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 1114 (1251)
+... ...||+|||+|.|- ....+.|+..++.. +...++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 5442 34699999999882 11234455555542 234667777777789999999998 589
Q ss_pred cCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCC
Q 000858 1115 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY 1153 (1251)
Q Consensus 1115 ~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~Gy 1153 (1251)
.+.+|+.++..++++.. ++ ++..++.++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999988888776 23 344567777777654
No 212
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.87 E-value=1.1e-07 Score=106.40 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=115.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEe--ccc-----cc---ccccCc-----h-HHHHHHHH----HHHHhcC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGA-NFINIS--MSS-----IT---SKWFGE-----G-EKYVKAVF----SLASKIA 1043 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~-~fi~V~--~s~-----L~---s~~~G~-----s-e~~I~~lF----~~A~k~~ 1043 (1251)
.-++|+||+|+|||++++.++..+.. .++.+. ... +. ...+|. . ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998752 222211 111 00 001111 1 11122222 2233456
Q ss_pred CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC--CCCC----cHHHHhcccccccCC
Q 000858 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVN 1117 (1251)
Q Consensus 1044 PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~--p~~L----d~aLlrRF~~~I~l~ 1117 (1251)
+.||+|||++.+- ... ...+..+... .......+.|+.+... ...+ ...+.+|+...++++
T Consensus 124 ~~vliiDe~~~l~--------~~~-~~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PEL-LEELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHH-HHHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 6899999999871 111 1122222111 1111223333444322 1111 134666887888999
Q ss_pred CCCHHHHHHHHHHHHhhcc-----cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCC
Q 000858 1118 LPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 1192 (1251)
Q Consensus 1118 lPd~eeR~eIL~~ll~k~~-----l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~ 1192 (1251)
+.+.++..+++...+.... ..++..++.|...+.|+. ..|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc--------------------
Confidence 9999999999998887532 234567888999999985 45999998888766553
Q ss_pred CCCCccccccccHHHHHHHHHHhc
Q 000858 1193 PLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1193 ~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
....|+.+++..++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 124599999999998765
No 213
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.86 E-value=2.1e-08 Score=119.40 Aligned_cols=143 Identities=23% Similarity=0.308 Sum_probs=85.5
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecc--
Q 000858 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS-- 1018 (1251)
Q Consensus 948 fddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~--~-----fi~V~~s-- 1018 (1251)
++++.+.+...+.+...+. ..++++|+||||||||++|+++|..+.. . ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 3455555666666655443 1257999999999999999999998842 1 2223221
Q ss_pred --cccccc----cCch--HHHHHHHHHHHHhc--CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccC-------
Q 000858 1019 --SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG------- 1081 (1251)
Q Consensus 1019 --~L~s~~----~G~s--e~~I~~lF~~A~k~--~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldg------- 1081 (1251)
+++..+ .|.. ...+..++..|... .|.|||||||++- + ..+++.+++..++.
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa-----n------i~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA-----N------LSKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc-----C------HHHhhhhhhhhcccccccccc
Confidence 222111 1100 11233445566543 4799999999864 1 12233333333321
Q ss_pred -C----------cccCCccEEEEEecCCCC----CCcHHHHhcccccccCCC
Q 000858 1082 -L----------RTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 1118 (1251)
Q Consensus 1082 -l----------~~k~~~~VlVIaTTN~p~----~Ld~aLlrRF~~~I~l~l 1118 (1251)
+ .-..+.++.||||+|..+ .+|.|++|||. .+.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 0 012347899999999876 79999999994 455543
No 214
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=2.9e-08 Score=120.90 Aligned_cols=166 Identities=22% Similarity=0.344 Sum_probs=102.9
Q ss_pred CCCce-EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHH--------HhcCCceEEEccc
Q 000858 982 KPCKG-ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA--------SKIAPSVVFVDEV 1052 (1251)
Q Consensus 982 ~P~~g-VLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A--------~k~~PsILfIDEI 1052 (1251)
+|+.. +||+||||-|||+||+.||+++|+.++++|+++-.+. ..++.....| ...+|.+|+||||
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 34433 7999999999999999999999999999999874321 2222222222 1256899999999
Q ss_pred cccccCCCCCchHHHHHHHHHhHHh----hccCCcccC-------C---ccEEEEEecCCCCCCcHHHHh--cccccccC
Q 000858 1053 DSMLGRRENPGEHEAMRKMKNEFMV----NWDGLRTKD-------K---ERVLVLAATNRPFDLDEAVVR--RLPRRLMV 1116 (1251)
Q Consensus 1053 D~L~~~r~~~~~~e~~~~il~~LL~----~ldgl~~k~-------~---~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l 1116 (1251)
|-- ...+.+ ++..++. +..|-.... + -.--|||.+|... .|+++. -|.++++|
T Consensus 397 DGa--------~~~~Vd-vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 397 DGA--------PRAAVD-VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAF 465 (877)
T ss_pred cCC--------cHHHHH-HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEe
Confidence 832 112222 2222222 111111100 0 1134788888654 355544 68889999
Q ss_pred CCCCHHHHHHHHHHHHhhcccCC-hhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000858 1117 NLPDAPNREKIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1251)
Q Consensus 1117 ~lPd~eeR~eIL~~ll~k~~l~~-dvdl~~LA~~T~GySgaDL~~L~~~Aa~~ 1168 (1251)
..|...-..+=|+.++..+++.- -..+..|+..|+ .||+.-++.....
T Consensus 466 ~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfL 514 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFL 514 (877)
T ss_pred cCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHH
Confidence 99998887888888888877652 233555555554 4666666655443
No 215
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.84 E-value=3.2e-09 Score=112.08 Aligned_cols=128 Identities=20% Similarity=0.334 Sum_probs=76.9
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----
Q 000858 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 1023 (1251)
Q Consensus 951 I~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~---- 1023 (1251)
|+|.+..++.+.+.+.. . ...+..|||+|++||||+++|++|.+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~----------~--a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKR----------A--ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHH----------H--TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHH----------H--hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 34555666666665542 1 1123579999999999999999998866 579999999875332
Q ss_pred -ccCchH-------HHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEe
Q 000858 1024 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1251)
Q Consensus 1024 -~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaT 1095 (1251)
.||... .....+|+.|.. ++||||||+.| ++..|..+.++++.-....-+-......+++||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 333211 112357777766 99999999998 43444444444443222222222222458999999
Q ss_pred cCC
Q 000858 1096 TNR 1098 (1251)
Q Consensus 1096 TN~ 1098 (1251)
|+.
T Consensus 141 t~~ 143 (168)
T PF00158_consen 141 TSK 143 (168)
T ss_dssp ESS
T ss_pred cCc
Confidence 986
No 216
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.82 E-value=2.2e-09 Score=107.80 Aligned_cols=118 Identities=31% Similarity=0.415 Sum_probs=69.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-ccc-ccccCch----HHHHHHHHHHHH-hcCCceEEEccccccccC
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGEG----EKYVKAVFSLAS-KIAPSVVFVDEVDSMLGR 1058 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s-~L~-s~~~G~s----e~~I~~lF~~A~-k~~PsILfIDEID~L~~~ 1058 (1251)
+|||+|+||+|||++|+++|+.++..|.+|.+. ++. ++..|.. +. ..|...+ ..-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 589999999999999999999999999988763 322 1111110 00 0000000 000269999999865
Q ss_pred CCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC-----CCcHHHHhccc
Q 000858 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 1111 (1251)
Q Consensus 1059 r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~-----~Ld~aLlrRF~ 1111 (1251)
.+..+.++.+++.+....+++....-+.+++||||.|+.+ .|+++++.||-
T Consensus 75 --ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 --PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ---HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred --CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5566777777888777777776665668899999999865 78899999983
No 217
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.2e-08 Score=112.38 Aligned_cols=73 Identities=33% Similarity=0.587 Sum_probs=62.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccCch-HHHHHHHHHHH----HhcCCceEEEcccccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLG 1057 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s-~~~G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~ 1057 (1251)
.+|||.||+|+|||.||+.||+.++.||..++|..|.. .|+|+. |..+..++..| .+.+.+|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 47999999999999999999999999999999999874 577765 56677777766 345679999999999973
No 218
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.81 E-value=1.3e-07 Score=113.61 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=92.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-cccccccC
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 1026 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~--~fi~V~~s-~L~s~~~G 1026 (1251)
.|.|.+++++.+...+. ...+|||+||||||||++|++|+..++. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 46788888887766553 1247999999999999999999998742 44444332 11223334
Q ss_pred ch-HHHH--HHHHHHHHhc---CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC
Q 000858 1027 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1251)
Q Consensus 1027 ~s-e~~I--~~lF~~A~k~---~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1100 (1251)
.. -... .+-|...... ...|||+|||..+ ++..+..+..++++-.....+-..+-+.+++|++| |...
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1222211111 1249999999865 44444455555544443333322222334455444 6422
Q ss_pred ---CCcHHHHhcccccccCCCCC-HHHHHHHHHHH
Q 000858 1101 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 1131 (1251)
Q Consensus 1101 ---~Ld~aLlrRF~~~I~l~lPd-~eeR~eIL~~l 1131 (1251)
...++++.||...+.+++|+ .++-.+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 23458999998889999987 45556677653
No 219
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.81 E-value=1.3e-08 Score=107.70 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecccccccccCchHHHHHHHHHHH----HhcCCceEEEccccc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDS 1054 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~----~fi~V~~s~L~s~~~G~se~~I~~lF~~A----~k~~PsILfIDEID~ 1054 (1251)
|...+||.||+|+|||.||+++|..+.. +++.++++.+... +..+..+..++..+ .....+||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999887651 11111222222211 111225999999999
Q ss_pred cccCCCCCchHHHHHHHHHhHHhhccCCccc-------CCccEEEEEecCCC
Q 000858 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP 1099 (1251)
Q Consensus 1055 L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k-------~~~~VlVIaTTN~p 1099 (1251)
.... ........-..+.+.|+..+++..-. +-.+++||+|+|--
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 8654 22233334445667777766543221 12579999999853
No 220
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=5.7e-08 Score=112.19 Aligned_cols=180 Identities=14% Similarity=0.228 Sum_probs=118.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 1016 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~----------fi~V~ 1016 (1251)
.|++|+|++.+++.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 2234689999999999999999999887321 11111
Q ss_pred ccccc---------ccc--------cC--------chHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHH
Q 000858 1017 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEA 1067 (1251)
Q Consensus 1017 ~s~L~---------s~~--------~G--------~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~ 1067 (1251)
.+++. ++. .| -.-..++.+...+... ...|++||++|.| +
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~------ 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----N------ 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----C------
Confidence 12211 100 00 0112455665555432 3469999999988 2
Q ss_pred HHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHH
Q 000858 1068 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1147 (1251)
Q Consensus 1068 ~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA 1147 (1251)
....+.|+..++.. + +.++|.+|+.++.|-+++++|+ ..+.|..++.++-.+++......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 12334555555542 2 3466777788899999999998 78999999999998888876432211 22346777
Q ss_pred HHcCCCcHHHHH
Q 000858 1148 NMADGYSGSDLK 1159 (1251)
Q Consensus 1148 ~~T~GySgaDL~ 1159 (1251)
....|-.+..+.
T Consensus 209 ~~a~Gs~~~al~ 220 (314)
T PRK07399 209 ALAQGSPGAAIA 220 (314)
T ss_pred HHcCCCHHHHHH
Confidence 777775554443
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=98.79 E-value=7.7e-08 Score=122.42 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=119.3
Q ss_pred CCCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecccccccccCchHHHHHHHHHHHHhcC------CceE
Q 000858 981 TKPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVV 1047 (1251)
Q Consensus 981 ~~P~~gVLL~G--PPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~------PsIL 1047 (1251)
.-|.-+-++.| |++.|||++|++||+++ +.+++.+|+++..+ -..++.+...+.... ..||
T Consensus 561 ~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 561 HVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred ccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 34545567888 99999999999999998 56899999987432 235666665544332 2599
Q ss_pred EEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHH
Q 000858 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 1127 (1251)
Q Consensus 1048 fIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eI 1127 (1251)
||||+|.| +... .+.|+..++. ...++.+|++||.++.+.+++++|+ ..+.|..|+.++-...
T Consensus 635 IIDEaD~L-----t~~A-------QnALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 635 FLDEADAL-----TQDA-------QQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred EEECcccC-----CHHH-------HHHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHH
Confidence 99999998 2222 2334444443 2256889999999999999999998 7899999999999999
Q ss_pred HHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000858 1128 IRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1128 L~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa 1166 (1251)
++.++.++++. ++..+..|+..++|-....| ++++.++
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~~~ 736 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEGDMRRAI-NILQAAA 736 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 99888876654 56678999999988655544 4445443
No 222
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.5e-08 Score=114.34 Aligned_cols=85 Identities=22% Similarity=0.438 Sum_probs=59.4
Q ss_pred CceEEEccccccccCCCCCchHHHHH-HHHHhHHhhccCCccc------CCccEEEEEec----CCCCCCcHHHHhcccc
Q 000858 1044 PSVVFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPR 1112 (1251)
Q Consensus 1044 PsILfIDEID~L~~~r~~~~~~e~~~-~il~~LL~~ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRF~~ 1112 (1251)
-+||||||||.++.+....+. ...+ -+...++-.+.|-.-. ..+++++||+. ..|.+|-|.+.-||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 469999999999866542221 2222 2333455455543211 23679999986 6788999999999999
Q ss_pred cccCCCCCHHHHHHHHH
Q 000858 1113 RLMVNLPDAPNREKIIR 1129 (1251)
Q Consensus 1113 ~I~l~lPd~eeR~eIL~ 1129 (1251)
++++...+.++-.+||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999888877764
No 223
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.78 E-value=2.2e-08 Score=120.23 Aligned_cols=202 Identities=18% Similarity=0.228 Sum_probs=118.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc--
Q 000858 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 1023 (1251)
Q Consensus 949 ddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~-- 1023 (1251)
.++.|.....+.+.+.+.. + ......++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 3456666666666555431 0 1123469999999999999999998776 578999999876322
Q ss_pred ---ccCchH-------HHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEE
Q 000858 1024 ---WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1251)
Q Consensus 1024 ---~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVI 1093 (1251)
.||... ....+.|.. ...++||||||+.| +...+..+.+++++-.....+.....+.++.||
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRIV 278 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEE
Confidence 122110 001112222 33589999999998 333344444444332211112111223468999
Q ss_pred EecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhc----ccC-Chhc---HHHHHHHcCCCc
Q 000858 1094 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA-SDVD---LEGIANMADGYS 1154 (1251)
Q Consensus 1094 aTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~----~l~-~dvd---l~~LA~~T~GyS 1154 (1251)
++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+. ... .... +..|....=.-+
T Consensus 279 ~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (445)
T TIGR02915 279 CATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357 (445)
T ss_pred EecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence 999764 34556676777 457788888888865 555555442 111 1223 333433332335
Q ss_pred HHHHHHHHHHHHhhhhH
Q 000858 1155 GSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1155 gaDL~~L~~~Aa~~air 1171 (1251)
.++|+++++.|+..+-.
T Consensus 358 vreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 358 VRELENKVKRAVIMAEG 374 (445)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 68999999988865443
No 224
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.74 E-value=1.8e-07 Score=108.17 Aligned_cols=64 Identities=39% Similarity=0.582 Sum_probs=44.0
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccc
Q 000858 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSI 1020 (1251)
Q Consensus 948 fddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg--~~fi~V~~s~L 1020 (1251)
.+.++|+.++.++.--.+.+ ...+. ...+++||.||||||||.||-+||+++| .||+.++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------Ik~~K--~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------IKEGK--IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------HHTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHHH-------Hhccc--ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 35699999998887665543 11221 1347899999999999999999999996 78876666553
No 225
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.74 E-value=1e-07 Score=108.89 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=96.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 1009 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg-------------------- 1009 (1251)
++.+.+.....+...+.. .. +-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666665542 11 1223599999999999999999999986
Q ss_pred ----CcEEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccC
Q 000858 1010 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1251)
Q Consensus 1010 ----~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldg 1081 (1251)
..|+.++.++..... .....++.+-...... ..-||+|||+|.|. ....+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhcc
Confidence 467777766643321 1233455554444333 34699999999982 1233444444433
Q ss_pred CcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHH
Q 000858 1082 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1251)
Q Consensus 1082 l~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~e 1126 (1251)
...+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+..
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHH
Confidence 3367899999999999999999998 577787755444433
No 226
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.74 E-value=3.7e-08 Score=119.93 Aligned_cols=153 Identities=25% Similarity=0.313 Sum_probs=91.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------------
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------------- 1008 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------------- 1008 (1251)
..|+++.|+..+++.+.-.+. ...+++|.||||||||+|++.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999988776654332 23579999999999999999998643
Q ss_pred -----------CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHh
Q 000858 1009 -----------GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1251)
Q Consensus 1009 -----------g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 1077 (1251)
..||....++......+|.....-.+.+..|.. +||||||++.+ +...++.+...+.....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 123333222221111222221112234444443 89999999987 32333344333332221
Q ss_pred hc--cCCcccCCccEEEEEecCCC-----C------------------CCcHHHHhcccccccCCCCCHH
Q 000858 1078 NW--DGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 1122 (1251)
Q Consensus 1078 ~l--dgl~~k~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRF~~~I~l~lPd~e 1122 (1251)
.+ .+.....+.++.+|+++|+. . .+...+++||+..+.++.++.+
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 11 11111223679999999863 1 4777888899988777766544
No 227
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.3e-07 Score=107.86 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=100.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecccccccccCchHHHHHHHHHH
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1038 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~~------------------------fi~V~~s~L~s~~~G~se~~I~~lF~~ 1038 (1251)
.+..+||+||+|+|||++|+++|+.+.+. ++.+.... .+. ...-..++.+...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCC--CCCHHHHHHHHHH
Confidence 44679999999999999999999988542 12221100 000 1123466666665
Q ss_pred HHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccc
Q 000858 1039 ASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1114 (1251)
Q Consensus 1039 A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 1114 (1251)
+... ..-|++||++|.| + ....|.|+..++. ++.++++|.+|+.++.|.+++++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m-----~-------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM-----N-------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhC-----C-------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 5432 3469999999998 2 2344566666654 2357888999999999999999999 569
Q ss_pred cCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 000858 1115 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1115 ~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySg 1155 (1251)
.|.+|+.++-.+.+..... ...+.....++....|-.+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPL 198 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHH
Confidence 9999999988877765431 1233344556666666444
No 228
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.68 E-value=1.4e-07 Score=114.17 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=118.2
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-
Q 000858 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1251)
Q Consensus 948 fddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~- 1023 (1251)
+.++.|.....+.+.+.+.. . ......+||+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-------~-----~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-------L-----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-------H-----hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 44667776666666655531 0 1123469999999999999999998876 579999999876322
Q ss_pred ----ccCchHH-------HHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEE
Q 000858 1024 ----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1251)
Q Consensus 1024 ----~~G~se~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlV 1092 (1251)
.+|.... .....|.. ...+.|||||||.| +...+..+.+++++-.....+.......++.|
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 1221110 00111222 23579999999988 33333333333332111111111112356899
Q ss_pred EEecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCCC
Q 000858 1093 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADGY 1153 (1251)
Q Consensus 1093 IaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~k~~----l----~~dvdl~~LA~~T~Gy 1153 (1251)
|+||+.. ..+.+.+..|| ..+.+.+|...+|.+ ++++++.... . .+...+..|....=.-
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 9999753 24667777787 356777787766654 6666665421 1 1222233444433233
Q ss_pred cHHHHHHHHHHHHhhhhH
Q 000858 1154 SGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1154 SgaDL~~L~~~Aa~~air 1171 (1251)
+.++|+++++.|+..+-.
T Consensus 356 Nv~eL~~~i~~~~~~~~~ 373 (469)
T PRK10923 356 NVRQLENTCRWLTVMAAG 373 (469)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 568999999998865543
No 229
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=3.6e-07 Score=106.28 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=101.7
Q ss_pred CcccccC-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000858 947 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 1011 (1251)
Q Consensus 947 tfddI~G-le~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~-------------- 1011 (1251)
.|+.|.| ++.+++.|...+.. .+.+..+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4677777 88899999887752 2344678999999999999999999887432
Q ss_pred ----------EEEEecccccccccCchHHHHHHHHHHHHh----cCCceEEEccccccccCCCCCchHHHHHHHHHhHHh
Q 000858 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1251)
Q Consensus 1012 ----------fi~V~~s~L~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 1077 (1251)
+..+... +.. ..-..++.+...+.. ...-|++|||+|.+ + ....+.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----~-------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----T-------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----C-------HHHHHHHHH
Confidence 1111110 110 112345555544432 12369999999988 2 223455666
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHH
Q 000858 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1130 (1251)
Q Consensus 1078 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ 1130 (1251)
.++. ++..+++|.+|+.+..|.+++++|+ ..+.+..|+.++-.++++.
T Consensus 133 ~LEE----Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE----PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC----CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 6654 2356777778888889999999998 6899999998887666653
No 230
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.64 E-value=8.8e-07 Score=108.24 Aligned_cols=228 Identities=20% Similarity=0.220 Sum_probs=144.2
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 000858 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 1020 (1251)
Q Consensus 951 I~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V~~s~L 1020 (1251)
+.+.+.-...|..++...+.. +. -...+.|.|-||||||.++..+-.++ .+.|+.||+-.|
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-----~~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-----QG----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-----CC----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 456677777777777643321 01 11359999999999999999997765 478899997554
Q ss_pred ccc----------ccCch------HHHHHHHHHHH-HhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCc
Q 000858 1021 TSK----------WFGEG------EKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1251)
Q Consensus 1021 ~s~----------~~G~s------e~~I~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~ 1083 (1251)
.+. +.|+. -..+..-|... .+..++||+|||+|.|+.+.+ .++..| -...
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q---------dVlYn~----fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ---------DVLYNI----FDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH---------HHHHHH----hcCC
Confidence 432 22221 11233333311 233568999999999975442 233333 2344
Q ss_pred ccCCccEEEEEecCCCCCCcHHHH----hccc-ccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH--H
Q 000858 1084 TKDKERVLVLAATNRPFDLDEAVV----RRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG--S 1156 (1251)
Q Consensus 1084 ~k~~~~VlVIaTTN~p~~Ld~aLl----rRF~-~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySg--a 1156 (1251)
...+.+++||+.+|..+....-+. +|++ .++.|.+.+.++..+|+...+..........++-+|+.....+| +
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 456688999999987653332222 2544 47889999999999999999888654445556666666655555 3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000858 1157 DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1219 (1251)
Q Consensus 1157 DL~~L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~ 1219 (1251)
....+|++|+..+..+.. + ....-...|++-|+.+|+.++..+.
T Consensus 616 raldic~RA~Eia~~~~~-~------------------~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV-K------------------GKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHhhhhcc-c------------------ccccccceeehHHHHHHHHHHhhhh
Confidence 344678888766555422 0 0111224688999999998875544
No 231
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.61 E-value=2.6e-07 Score=111.23 Aligned_cols=178 Identities=21% Similarity=0.269 Sum_probs=103.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----ccCchHH-------HHHHHHHHHHhcCCceEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFV 1049 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~-----~~G~se~-------~I~~lF~~A~k~~PsILfI 1049 (1251)
..+||+|++||||+++|+++.... +.+|+.++|..+... .+|.... ...+.|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 469999999999999999998765 579999999876332 2221100 001122222 3489999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000858 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1122 (1251)
Q Consensus 1050 DEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 1122 (1251)
||||.| +...+..+..++..-.....+.....+.++.||+||+.. ..+.+.+..|+. .+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChh
Confidence 999998 322333333333221111111111123468999999864 245556666663 5778888888
Q ss_pred HHHH----HHHHHHhhccc----C-ChhcHH---HHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 000858 1123 NREK----IIRVILAKEEL----A-SDVDLE---GIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1123 eR~e----IL~~ll~k~~l----~-~dvdl~---~LA~~T~GySgaDL~~L~~~Aa~~air 1171 (1251)
+|.+ ++..++.+... . ..+..+ .|....=.-+.++|+++++.|+..+-.
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~ 378 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSG 378 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 8765 44555544211 1 123333 333333233668999999988865533
No 232
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.59 E-value=1.4e-06 Score=99.26 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=109.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccc----------ccc----c--cCchHHHHHHHHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSI----------TSK----W--FGEGEKYVKAVFSLA 1039 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---------g~~fi~V~~s~L----------~s~----~--~G~se~~I~~lF~~A 1039 (1251)
.++||+|++|+|||++++.++... .+|++.+.++.- +.. + .....+.-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765 257888876431 100 0 011223344456677
Q ss_pred HhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC--CCCCcHHHHhcccccccCC
Q 000858 1040 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVN 1117 (1251)
Q Consensus 1040 ~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRF~~~I~l~ 1117 (1251)
+...+-+|+||||+.++.... ...+.+++.+-.. ...-+-+++.+||-.- .-.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~LK~L----~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNALKFL----GNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHHHHH----hhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 788889999999999763322 1223344433332 2222244566665432 2345688889994 55555
Q ss_pred CCC-HHHHHHHHHHHHhhcccC------ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHH
Q 000858 1118 LPD-APNREKIIRVILAKEELA------SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1251)
Q Consensus 1118 lPd-~eeR~eIL~~ll~k~~l~------~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airr 1172 (1251)
... -++-..++..+-....+. ...-...|-.+++|..| +|..|+..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 433 344455666666554433 22223566677888654 8999999999888875
No 233
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=3.5e-06 Score=99.35 Aligned_cols=237 Identities=21% Similarity=0.261 Sum_probs=145.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccc-
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 1023 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~s~- 1023 (1251)
.+.|.+.-+..+++++..++. ...+..+.+.|.||||||.+...+...+ ....++++|..|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578889999999998886554 2234679999999999999999876655 235588888653211
Q ss_pred ---------c----cCc-hHHHHHHHHHHH-Hhc-CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCC
Q 000858 1024 ---------W----FGE-GEKYVKAVFSLA-SKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1251)
Q Consensus 1024 ---------~----~G~-se~~I~~lF~~A-~k~-~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~ 1087 (1251)
+ .+. .+......|+.- .+. .+-||++||+|.|+.+.. .++.+ +.+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~-lFewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYT-LFEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeee-ehhcccC---Cc
Confidence 1 111 112222333322 222 367999999999973321 12221 2234443 45
Q ss_pred ccEEEEEecCCCCCCcHHHHh---c---ccccccCCCCCHHHHHHHHHHHHhhcccCC--hhcHHHHHHHcCCCcHHHHH
Q 000858 1088 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELAS--DVDLEGIANMADGYSGSDLK 1159 (1251)
Q Consensus 1088 ~~VlVIaTTN~p~~Ld~aLlr---R---F~~~I~l~lPd~eeR~eIL~~ll~k~~l~~--dvdl~~LA~~T~GySgaDL~ 1159 (1251)
.++++|+.+|..+.-|..+-+ | -+..+.|++++.++..+||+.-+....... +..++..|+...|.+| ||+
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987665544444 2 356789999999999999999988865443 3346778888888777 555
Q ss_pred H---HHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccc
Q 000858 1160 N---LCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1220 (1251)
Q Consensus 1160 ~---L~~~Aa~~airriie~~~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~pS~s 1220 (1251)
. +|+.|...+ +.+.+. ................+|.++++..++.++-.+-+
T Consensus 367 kaLdv~R~aiEI~-----E~e~r~-----~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDVCRRAIEIA-----EIEKRK-----ILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHHHHHHHHHH-----HHHHhh-----ccccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 4 344443222 211111 00111111112222367889999999887755543
No 234
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.55 E-value=7.8e-07 Score=103.69 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=47.8
Q ss_pred Ccc-cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 000858 947 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 1017 (1251)
Q Consensus 947 tfd-dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------~fi~V~~ 1017 (1251)
-|+ ++.|+++++.+|.+++.... .+.....+.++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 355 79999999999988776422 111223356899999999999999999999965 7776654
No 235
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=2.1e-06 Score=95.46 Aligned_cols=183 Identities=20% Similarity=0.292 Sum_probs=127.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEeccc---
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS--- 1019 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-g--~~fi~V~~s~--- 1019 (1251)
.+++.+.+.++....|+.+.. .....++|+|||+|+||-+.+.++.+++ | .+=..+...+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 456677778888888877553 1122589999999999999999999887 3 2111111100
Q ss_pred ----------ccc--------cccCch-HHHHHHHHHHHHhcCC---------ceEEEccccccccCCCCCchHHHHHHH
Q 000858 1020 ----------ITS--------KWFGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1251)
Q Consensus 1020 ----------L~s--------~~~G~s-e~~I~~lF~~A~k~~P---------sILfIDEID~L~~~r~~~~~~e~~~~i 1071 (1251)
+.+ .-.|.. .-.+..+..+..+.+| .|++|-|+|.| ....|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 111 112222 2345555555444333 49999999999 33456677777
Q ss_pred HHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 000858 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1251)
Q Consensus 1072 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T 1150 (1251)
+.... .++.+|..+|....+-+.+++|+ ..+.++.|+.++...++...+.++.+. +...+..||+..
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 76554 45788888999999999999987 578999999999999999999998876 455578888888
Q ss_pred CCCcHHHHH
Q 000858 1151 DGYSGSDLK 1159 (1251)
Q Consensus 1151 ~GySgaDL~ 1159 (1251)
+|.-.+.|-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 776555543
No 236
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=1e-06 Score=109.85 Aligned_cols=195 Identities=14% Similarity=0.215 Sum_probs=112.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eecc---cc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMS---SI 1020 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~-V~~s---~L 1020 (1251)
..+++++.+.++..+.++.++..... . ..+..-++|+||||+|||++++.+|.+++..+++ ++.. ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 46889999999999999887753111 0 2233459999999999999999999999866544 1111 00
Q ss_pred cc---------c---ccCchHHHHHHHHHHHHh----------cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhh
Q 000858 1021 TS---------K---WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1251)
Q Consensus 1021 ~s---------~---~~G~se~~I~~lF~~A~k----------~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ 1078 (1251)
.. . .+......+..++..|.. ....|||||||+.++.. . ......++.. .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~~lq~lLr~---~ 222 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TRALHEILRW---K 222 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HHHHHHHHHH---H
Confidence 00 0 011122344555555542 23569999999987532 1 1122222220 1
Q ss_pred ccCCcccCCccEEEEEecCCCC----------C----CcHHHHh--cccccccCCCCCHHHHHHHHHHHHhhccc-----
Q 000858 1079 WDGLRTKDKERVLVLAATNRPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL----- 1137 (1251)
Q Consensus 1079 ldgl~~k~~~~VlVIaTTN~p~----------~----Ld~aLlr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l----- 1137 (1251)
... ....+ +|+++|..+. . |.++++. |. .+|.|.+.+..+..+.|+.++..+..
T Consensus 223 ~~e---~~~~p-LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 223 YVS---IGRCP-LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred hhc---CCCce-EEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 111 11122 3333331111 1 3467775 44 47899999999988888888876421
Q ss_pred ---CChhcHHHHHHHcCCCcHHHHHHH
Q 000858 1138 ---ASDVDLEGIANMADGYSGSDLKNL 1161 (1251)
Q Consensus 1138 ---~~dvdl~~LA~~T~GySgaDL~~L 1161 (1251)
.....+..|+....|-....|..|
T Consensus 298 ~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred cccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 122456777776666544444333
No 237
>PRK08116 hypothetical protein; Validated
Probab=98.53 E-value=4.7e-07 Score=102.49 Aligned_cols=122 Identities=18% Similarity=0.285 Sum_probs=70.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc----CchHHHHHHHHHHHHhcCCceEEEccccccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF----GEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~----G~se~~I~~lF~~A~k~~PsILfIDEID~L~ 1056 (1251)
..+++|+|++|||||+||.+|++++ +.+++.++..++..... +........++.... ...+|+|||+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 3579999999999999999999986 78888888877654321 111111222333222 3469999999642
Q ss_pred cCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-CC----CcHHHHhcc---cccccCCCCC
Q 000858 1057 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPD 1120 (1251)
Q Consensus 1057 ~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-~~----Ld~aLlrRF---~~~I~l~lPd 1120 (1251)
.......+.+..+++.... ....+|.|||.+ .. ++..+.+|+ ...+.+.-++
T Consensus 191 --~~t~~~~~~l~~iin~r~~----------~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 191 --RDTEWAREKVYNIIDSRYR----------KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred --CCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 1121222333333333321 123466677754 33 456777774 2234455555
No 238
>PRK15115 response regulator GlrR; Provisional
Probab=98.52 E-value=9.7e-07 Score=106.10 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=103.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----cCchHH-------HHHHHHHHHHhcCCceEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK-------YVKAVFSLASKIAPSVVFV 1049 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~-----~G~se~-------~I~~lF~~A~k~~PsILfI 1049 (1251)
..++|+|++||||+++|+++.... +.+|+.++|..+.... +|.... ....+|. ....++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEE
Confidence 469999999999999999998875 5799999998763321 111100 0011222 223589999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000858 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1122 (1251)
Q Consensus 1050 DEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 1122 (1251)
||||.| +...+..+.+++.+-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999998 333344443333322111112111223478999999753 12334444455 35678888988
Q ss_pred HHHH----HHHHHHhhccc--------CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhh
Q 000858 1123 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPI 1170 (1251)
Q Consensus 1123 eR~e----IL~~ll~k~~l--------~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~ai 1170 (1251)
+|.+ +++.++..... .++.-+..|....=.-+.++|+++++.|+..+-
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~ 368 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS 368 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 8854 44566554211 123334444444423366889999988876543
No 239
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.50 E-value=8.9e-07 Score=107.84 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=89.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec----
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISM---- 1017 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg----~~fi~V~~---- 1017 (1251)
..|.++.|...+++.+.-.+ .....++|+||+|+|||+|++.|+..+. -..+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 36778888877666543211 1235799999999999999999986552 11111110
Q ss_pred --c-----ccc-------------ccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHh
Q 000858 1018 --S-----SIT-------------SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1251)
Q Consensus 1018 --s-----~L~-------------s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 1077 (1251)
. .+. ...+|.....-...+..|.. ++||||||+.+ +...++.+++.+.+-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 0 000 00122211122235555555 89999999876 32233333333332222
Q ss_pred hccC--CcccCCccEEEEEecCCCC---------------------CCcHHHHhcccccccCCCCCHH
Q 000858 1078 NWDG--LRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 1122 (1251)
Q Consensus 1078 ~ldg--l~~k~~~~VlVIaTTN~p~---------------------~Ld~aLlrRF~~~I~l~lPd~e 1122 (1251)
.+.. .....+.++.+|+|+|+.. .+...+++||+..+.++.|+.+
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 2221 1212246799999999752 4777899999998999888644
No 240
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.50 E-value=3.4e-07 Score=116.30 Aligned_cols=174 Identities=19% Similarity=0.216 Sum_probs=98.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEE
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINI 1015 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~---k~----~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-------g~~fi~V 1015 (1251)
.|.|.+.+|..|.-.+.-.......+. .+ .-.+-..+|||+|+||||||.+|+++++.. |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 589999999887544422111100000 00 112233479999999999999999998865 2345554
Q ss_pred ecccccccccC--chHHH-HHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhh--ccCCcccCCccE
Q 000858 1016 SMSSITSKWFG--EGEKY-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTKDKERV 1090 (1251)
Q Consensus 1016 ~~s~L~s~~~G--~se~~-I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~--ldgl~~k~~~~V 1090 (1251)
.+..... +.+ .++.. -.+.+..|. .++++|||++.| +...+..+..++.+-... -.|+...-+.++
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkm-----s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~ 601 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELDKC-----HNESRLSLYEVMEQQTVTIAKAGIVATLKAET 601 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEcC---CCeEEecchhhC-----CHHHHHHHHHHHhCCEEEEecCCcceecCCCe
Confidence 4433211 000 00000 011222222 389999999988 323333333333222111 124333345789
Q ss_pred EEEEecCCC-------------CCCcHHHHhcccccc-cCCCCCHHHHHHHHHHHH
Q 000858 1091 LVLAATNRP-------------FDLDEAVVRRLPRRL-MVNLPDAPNREKIIRVIL 1132 (1251)
Q Consensus 1091 lVIaTTN~p-------------~~Ld~aLlrRF~~~I-~l~lPd~eeR~eIL~~ll 1132 (1251)
.||||+|+. -.|++.+++||+.++ .++.|+.+.=..|.++++
T Consensus 602 rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 602 AILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred EEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 999999974 257799999998654 446777666566655554
No 241
>PRK12377 putative replication protein; Provisional
Probab=98.50 E-value=6.6e-07 Score=100.16 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=66.0
Q ss_pred hhcCCCCCCCCCCCcccccC----cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 000858 934 LLADVIPPSDIGVTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 1008 (1251)
Q Consensus 934 ll~~vIp~~e~~~tfddI~G----le~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el- 1008 (1251)
+....|++.....+|+++.. ...++..+..++.. |.. ...+++|+||||||||+||.+|++++
T Consensus 59 ~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 59 LNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455666666778988653 22234444444331 111 22589999999999999999999988
Q ss_pred --CCcEEEEecccccccccCch--HHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 1009 --GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 1009 --g~~fi~V~~s~L~s~~~G~s--e~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
|..++.++..++....-... ......++... ....+|+|||++..
T Consensus 127 ~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 127 AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 67788888777655321100 00111222222 34689999999754
No 242
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.49 E-value=7.5e-07 Score=93.50 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=85.4
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 000858 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 1010 (1251)
Q Consensus 953 Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~---------------------- 1010 (1251)
|++++.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887763 234467999999999999999999988722
Q ss_pred -cEEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCccc
Q 000858 1011 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1251)
Q Consensus 1011 -~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k 1085 (1251)
.++.+....-.. .-....++.+...+... ..-|++|||+|.| + ....+.|+..|+.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----~-------~~a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----T-------EEAQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----h-------HHHHHHHHHHhcC----
Confidence 123332221100 11234566666655433 2459999999998 2 2344555555554
Q ss_pred CCccEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000858 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1251)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1118 (1251)
.+.++++|.+|+.++.|.+.+++|+ ..+.++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 3467899999999999999999998 4555543
No 243
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=3.4e-06 Score=97.90 Aligned_cols=164 Identities=13% Similarity=0.149 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 000858 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 1011 (1251)
Q Consensus 954 le~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~---------------------- 1011 (1251)
+....+.|...+.. .+-+..+||+||.|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34556666665542 2344689999999999999999999988431
Q ss_pred --EEEEecccccccccCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCccc
Q 000858 1012 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1251)
Q Consensus 1012 --fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k 1085 (1251)
|+.+... .++. ..-..++.+...+... .--|++||++|.|- ....|.|+..++.
T Consensus 74 PD~~~i~p~--~~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE---- 133 (325)
T PRK06871 74 PDFHILEPI--DNKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE---- 133 (325)
T ss_pred CCEEEEccc--cCCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----
Confidence 1112110 0111 1234566665555432 23599999999982 2344566666655
Q ss_pred CCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 000858 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySg 1155 (1251)
++.++++|.+|+.++.|.+.+++|+ ..+.|.+|+.++-.+.+..... ........++....|-.+
T Consensus 134 Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 134 PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 3467899999999999999999998 6789999999888777765421 122234445555555443
No 244
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=3.3e-06 Score=98.54 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=99.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EE---------Eeccccccccc-----CchHHHHHHHHHHHH
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------IN---------ISMSSITSKWF-----GEGEKYVKAVFSLAS 1040 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f-------i~---------V~~s~L~s~~~-----G~se~~I~~lF~~A~ 1040 (1251)
+.+..+||+||+|+||+++|.++|..+-+.- =. -+-+++.--.. .-.-..++.+...+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 3456899999999999999999999883310 00 00111110000 012335666555544
Q ss_pred hc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccC
Q 000858 1041 KI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 1116 (1251)
Q Consensus 1041 k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l 1116 (1251)
.. .--|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.|.+.+++|+ ..+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RLHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-ccccC
Confidence 32 33699999999982 2344666666655 3467899999999999999999999 47899
Q ss_pred CCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHH
Q 000858 1117 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1156 (1251)
Q Consensus 1117 ~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySga 1156 (1251)
++|+.++..+.+... ... +......++..+.|-.+.
T Consensus 165 ~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGA 200 (334)
T ss_pred CCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHH
Confidence 999988777766532 122 223345566666665443
No 245
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.47 E-value=7.7e-07 Score=101.41 Aligned_cols=202 Identities=22% Similarity=0.306 Sum_probs=124.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~ 1021 (1251)
...|+.|++....++.+.+.... ++ .. ...+||.|.+||||-.+|++..... ..||+.+||+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~A---ml--DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------LA---ML--DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------hh---cc--CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 44677888887777666554321 11 11 1349999999999999999986655 7899999997653
Q ss_pred -----ccccCchH--HHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEE
Q 000858 1022 -----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1251)
Q Consensus 1022 -----s~~~G~se--~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIa 1094 (1251)
+..||... .--..+|+.|.. +.+|+|||..| ++..+..+.+.++.-....-|-......+|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 23444432 345678998877 89999999887 4445555555555433322232223346899999
Q ss_pred ecCCC-------CCCcHHHHhcccccccCCCCCHHHHHH----HHHHHHh----hcccC-ChhcHHHHHHHcC-CC--cH
Q 000858 1095 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILA----KEELA-SDVDLEGIANMAD-GY--SG 1155 (1251)
Q Consensus 1095 TTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----IL~~ll~----k~~l~-~dvdl~~LA~~T~-Gy--Sg 1155 (1251)
||..+ ..+-+.+.-|+ .++.+.+|...+|.. +.+.|+. +.... +..+.+.+-..+. +| +.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNV 418 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNV 418 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccH
Confidence 99653 23334444466 478888888877754 3333333 33322 3333333333333 23 44
Q ss_pred HHHHHHHHHHHh
Q 000858 1156 SDLKNLCVTAAH 1167 (1251)
Q Consensus 1156 aDL~~L~~~Aa~ 1167 (1251)
++|+|.+-+|+.
T Consensus 419 RqL~N~iyRA~s 430 (511)
T COG3283 419 RQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHHHH
Confidence 677777666654
No 246
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.46 E-value=9.9e-07 Score=110.17 Aligned_cols=49 Identities=31% Similarity=0.460 Sum_probs=41.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg 1009 (1251)
...|+++.|+++++..|...+.. ..++||+||||||||++|+++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 35789999999999998886652 13799999999999999999988663
No 247
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.45 E-value=7.3e-07 Score=107.63 Aligned_cols=205 Identities=20% Similarity=0.295 Sum_probs=114.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 1023 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~--- 1023 (1251)
.+.|.......+.+.+.. + ......++|.|.+||||+++|+++.... +.+|+.++|..+...
T Consensus 135 ~lig~s~~~~~v~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-------L-----SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-------H-----hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666666666555432 0 1122469999999999999999998775 579999999876332
Q ss_pred --ccCchHHH-------HHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEE
Q 000858 1024 --WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1251)
Q Consensus 1024 --~~G~se~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIa 1094 (1251)
.+|..... ....|. ....++||||||+.| +...+..+.+++.+-....-+.......++.||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 12211000 001122 223589999999998 2222333333222211111111111224678999
Q ss_pred ecCCC-------CCCcHHHHhcccccccCCCCCHHHHH----HHHHHHHhhccc----C-ChhcHHHHHHHcC-CC--cH
Q 000858 1095 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEEL----A-SDVDLEGIANMAD-GY--SG 1155 (1251)
Q Consensus 1095 TTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~----eIL~~ll~k~~l----~-~dvdl~~LA~~T~-Gy--Sg 1155 (1251)
+|+.. ..+.+.+..|+. .+.+.+|...+|. .+++.++..... . ..+.-+.+..... +| +.
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 353 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV 353 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 88753 245567777773 4566677765554 455555544211 1 1233333333332 33 45
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 000858 1156 SDLKNLCVTAAHCPIREILE 1175 (1251)
Q Consensus 1156 aDL~~L~~~Aa~~airriie 1175 (1251)
++|+++++.|+..+....+.
T Consensus 354 reL~~~~~~~~~~~~~~~i~ 373 (463)
T TIGR01818 354 RQLENLCRWLTVMASGDEVL 373 (463)
T ss_pred HHHHHHHHHHHHhCCCCccc
Confidence 89999999988765444333
No 248
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.7e-06 Score=107.00 Aligned_cols=127 Identities=23% Similarity=0.319 Sum_probs=90.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI---- 1020 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~--P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L---- 1020 (1251)
.|+|++++...+-++|.. ++.++.+ |...+||.||.|+|||-||+++|..+ .-.++.++++++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 588999999999998875 2334444 56679999999999999999999998 567899999852
Q ss_pred --ccc---ccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccC-------Cc
Q 000858 1021 --TSK---WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------KE 1088 (1251)
Q Consensus 1021 --~s~---~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~-------~~ 1088 (1251)
.+. |.|.. ...++.+..++.+-+||+|||||.- ...+++.|+..++.....+ -.
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 222 34432 3345666666666699999999864 2345555566665443322 26
Q ss_pred cEEEEEecCC
Q 000858 1089 RVLVLAATNR 1098 (1251)
Q Consensus 1089 ~VlVIaTTN~ 1098 (1251)
+++||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 7999999864
No 249
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=7.4e-06 Score=94.94 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E---EEec---------ccc
Q 000858 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---NISM---------SSI 1020 (1251)
Q Consensus 954 le~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f-i---~V~~---------s~L 1020 (1251)
+..+.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+.- . .+.+ +++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 34566667665542 23346799999999999999999998873311 0 0000 111
Q ss_pred cc-----cccC------chHHHHHHHHHHHHhcC----CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCccc
Q 000858 1021 TS-----KWFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1251)
Q Consensus 1021 ~s-----~~~G------~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k 1085 (1251)
.- ...| -.-..|+.+...+...+ --|++||++|.| + ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----N-------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----C-------HHHHHHHHHHhhC----
Confidence 10 0001 12345666666554433 259999999998 2 2234556655554
Q ss_pred CCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHH
Q 000858 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1158 (1251)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySgaDL 1158 (1251)
+..++++|.+|+.++.|.+.+++|+ ..+.|..|+.++-...+... .. +..+...++....|-.+..+
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHH
Confidence 3356788888999999999999999 67889999988777666532 22 23334466677766555443
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.40 E-value=1.9e-06 Score=96.36 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=67.3
Q ss_pred hhcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 000858 934 LLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 1008 (1251)
Q Consensus 934 ll~~vIp~~e~~~tfddI~Gl-e~---vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el- 1008 (1251)
+....+++.....+|+++... +. +...+.+++.. |. ....+++|+|++|||||+|+.+||+++
T Consensus 57 ~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 57 FNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344556665567789986533 22 33333333321 11 112489999999999999999999988
Q ss_pred --CCcEEEEecccccccccCc---hHHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 1009 --GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 1009 --g~~fi~V~~s~L~s~~~G~---se~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
+..++.++.+++....-.. .......++.... ...+|+|||++..
T Consensus 125 ~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 125 LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887766432211 1111223343332 4689999999875
No 251
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.40 E-value=4.7e-07 Score=107.52 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=70.8
Q ss_pred ceeeecceeEEccCCccceeecCCC--CCccceEEEEeecCCcceEEEEEecCCceEEEc--CeecCCCceEEeeCCCEE
Q 000858 146 HLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDEL 221 (1251)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~~~d~~--~s~~~c~l~~~~~~~~~~a~le~~~~~g~v~vN--g~~~~k~~~~~L~~gdev 221 (1251)
.+.+....++|||+..||+.+.|+. +|..||+|... +|. .+|+|.|+||| +|| |..+.++..+.|+.||+|
T Consensus 18 ~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g~--~~l~DlStNGT-~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 18 QKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DGA--YLLTDLSTNGV-FLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred EEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CCE--EEEEECCCCCe-EECCCCCCCCCCCceEcCCCCEE
Confidence 5667778899999999999999999 99999999965 343 78999988999 799 999999999999999999
Q ss_pred EEccCCCeeEE
Q 000858 222 VFSPSGKHSYI 232 (1251)
Q Consensus 222 ~f~~~~~~ayi 232 (1251)
.|+...-..++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99876444443
No 252
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=3.9e-06 Score=98.06 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=90.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------------------EEEeccccc---------------
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------------------INISMSSIT--------------- 1021 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f-------------------------i~V~~s~L~--------------- 1021 (1251)
+-+..+||+||+|+||+++|+++|+.+.+.. +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 3457899999999999999999999885422 111110000
Q ss_pred ---ccc-----cCchHHHHHHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCcc
Q 000858 1022 ---SKW-----FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1251)
Q Consensus 1022 ---s~~-----~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~ 1089 (1251)
+.. -.-.-..++.+...+... .--|++||++|.|- ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 000 001123456555544322 23599999999982 2344666666664 3467
Q ss_pred EEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHH
Q 000858 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1131 (1251)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~l 1131 (1251)
+++|.+|+.++.|.+++++|+ ..+.|++|+.++..+++...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 68999999998888887653
No 253
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.1e-07 Score=110.24 Aligned_cols=47 Identities=40% Similarity=0.628 Sum_probs=39.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1251)
..+|.|+.|++..|..|.-... + ..++|++||||||||+||+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhccc
Confidence 3479999999999999977654 2 258999999999999999987543
No 254
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.34 E-value=3.8e-07 Score=92.74 Aligned_cols=105 Identities=24% Similarity=0.512 Sum_probs=64.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1061 (1251)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..+++.+ ..+.|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4699999999999999999998774 466666766533 3344444 6699999999998 2
Q ss_pred CchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCC
Q 000858 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLP 1119 (1251)
Q Consensus 1062 ~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lP 1119 (1251)
...+. .++ .++.. . ...++.+|+++..+ ..+++.+..||. .+.+.+|
T Consensus 83 ~~~Q~---~L~-~~l~~---~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lP 136 (138)
T PF14532_consen 83 PEAQR---RLL-DLLKR---Q---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLP 136 (138)
T ss_dssp HHHHH---HHH-HHHHH---C---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE-
T ss_pred HHHHH---HHH-HHHHh---c---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCC
Confidence 22222 222 22222 1 12456777776542 246677777774 3344444
No 255
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.33 E-value=3.3e-06 Score=101.17 Aligned_cols=176 Identities=18% Similarity=0.254 Sum_probs=99.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----cCchHHH-------HHHHHHHHHhcCCceEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 1049 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~-----~G~se~~-------I~~lF~~A~k~~PsILfI 1049 (1251)
..++|+|.+||||+++|+++.... +.+|+.++|..+.... +|..... ....|. ...+++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 569999999999999999998665 5799999998754321 2211000 001122 234689999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhcccccccCCCCCHH
Q 000858 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1122 (1251)
Q Consensus 1050 DEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 1122 (1251)
||||.| +...+..+..++..-.....+.......++.+|++|+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 240 dei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 322333332332222111112111123467888888653 23444555565 35777888887
Q ss_pred HHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000858 1123 NREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1251)
Q Consensus 1123 eR~e----IL~~ll~k~~----l----~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~a 1169 (1251)
+|.+ +++.++.+.. . .++..+..|....=.-+.++|+++++.|+..+
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 7754 5556655421 1 12222333333321225578888888777543
No 256
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.33 E-value=1e-06 Score=94.95 Aligned_cols=180 Identities=19% Similarity=0.271 Sum_probs=93.7
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-cc--------
Q 000858 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SS-------- 1019 (1251)
Q Consensus 952 ~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~---~fi~V~~-s~-------- 1019 (1251)
.|.++..+.|.+.+.. .+...++|+||.|+|||+|++.+...+.- ..+.+.. ..
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4566666777665541 12357999999999999999999998832 1111211 00
Q ss_pred c-------------ccc-------------ccCchHHHHHHHHHHHHhcC-CceEEEccccccc-cCCCCCchHHHHHHH
Q 000858 1020 I-------------TSK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 1071 (1251)
Q Consensus 1020 L-------------~s~-------------~~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~-~~r~~~~~~e~~~~i 1071 (1251)
+ ... ........+..++....+.. ..||+|||++.+. ..... . .+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~---~----~~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED---K----DF 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT---H----HH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch---H----HH
Confidence 0 000 00112345666666665543 4899999999996 22211 1 22
Q ss_pred HHhHHhhccCCcccCCccEEEEEecCCCCC------CcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcc-c-CChhcH
Q 000858 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFD------LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 1143 (1251)
Q Consensus 1072 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~------Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~-l-~~dvdl 1143 (1251)
+..+...++..... .++.+|.+++.... -...+..|+.. +.+++.+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 23333333332221 34444444433211 11234446755 89999999999999999877651 1 267788
Q ss_pred HHHHHHcCCCcH
Q 000858 1144 EGIANMADGYSG 1155 (1251)
Q Consensus 1144 ~~LA~~T~GySg 1155 (1251)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 999999988643
No 257
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.31 E-value=2.5e-06 Score=105.86 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=92.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccccCch--HHHH--------HHHHHHHHhcCCceEEEccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 1052 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg--~~fi~V~~s~L~s~~~G~s--e~~I--------~~lF~~A~k~~PsILfIDEI 1052 (1251)
.||||.|+.|+||++++++++.-+. .||+.+..+.-....+|.. +..+ ..++..|.. +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999884 5888877654444444443 1111 123333333 89999999
Q ss_pred cccccCCCCCchHHHHHHHHHhHHhhc--cCCcccCCccEEEEEecCCC---CCCcHHHHhcccccccCCCCCHHH
Q 000858 1053 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 1123 (1251)
Q Consensus 1053 D~L~~~r~~~~~~e~~~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~l~lPd~ee 1123 (1251)
..+ .+...+.+...+.+-.+.+ ++.....+.++++|++-|.. +.|.+.++.||+..+.+..|...+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 877 4445555566665555555 56666666889999985432 458899999999999998877554
No 258
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.9e-05 Score=91.55 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 000858 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 1011 (1251)
Q Consensus 954 le~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~---------------------- 1011 (1251)
+....+.|...+.. .+-+..+||+||.|+||+.+|+++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 35566667665542 3345689999999999999999999887321
Q ss_pred -EEEEecccccccccCchHHHHHHHHHHHHhcC----CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccC
Q 000858 1012 -FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1086 (1251)
Q Consensus 1012 -fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~ 1086 (1251)
|+.+.... .++. -.-..++.+-..+...+ --|++||++|.| + ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----N-------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-----C-------HHHHHHHHHHhcC----C
Confidence 22221110 0011 12335566555543322 369999999998 2 2344566666655 3
Q ss_pred CccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHH
Q 000858 1087 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1130 (1251)
Q Consensus 1087 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ 1130 (1251)
+.++++|.+|+.++.|.+.+++|+ ..+.|+.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999999 6889999998887776654
No 259
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.26 E-value=1.3e-05 Score=89.68 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=57.6
Q ss_pred CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC-------------CCCCcHHHHhc
Q 000858 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 1109 (1251)
Q Consensus 1043 ~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-------------p~~Ld~aLlrR 1109 (1251)
-|+||||||++.| + -..+..|-..+..- -.-+||.++|+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----D-------iEcFTyL~kalES~-----iaPivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D-------IECFTYLHKALESP-----IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h-------hHHHHHHHHHhcCC-----CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4889999999877 1 11122222222221 12355566654 67888999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcC
Q 000858 1110 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1151 (1251)
Q Consensus 1110 F~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~ 1151 (1251)
+ .+|...+.+.++.++|++...+.+.+. ++..+..|+.+..
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 8 566666778888889998888777665 3444566665543
No 260
>PRK08181 transposase; Validated
Probab=98.23 E-value=3e-06 Score=96.03 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCc-hHHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
.+++|+||||||||+||.+|++++ |..++.++..++....... .+.....++... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999765 7888888887766543111 011122333332 24689999999876
No 261
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.23 E-value=1.8e-05 Score=88.66 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=64.0
Q ss_pred CCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000858 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1251)
Q Consensus 1099 p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~ 1177 (1251)
|+-++-.++.|. .+|.-.+.+.++-.+||+..+..+.+. .+..++.|.......+-+--.+|+..|...+.++
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr----- 412 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR----- 412 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-----
Confidence 678888999988 567777888999999999999887654 3333455555555555566667777777776665
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000858 1178 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1178 ~~ek~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
..+.+..+|++.+..-+-
T Consensus 413 ---------------------k~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 413 ---------------------KGKVVEVDDIERVYRLFL 430 (454)
T ss_pred ---------------------cCceeehhHHHHHHHHHh
Confidence 124577788888876543
No 262
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.23 E-value=1.1e-06 Score=86.82 Aligned_cols=54 Identities=30% Similarity=0.505 Sum_probs=41.6
Q ss_pred HHHHHHHHhhccCC-CCeEEEEcChhhhhccC--------hhhHHHHHHHHhcCCC---CEEEEeeccC
Q 000858 690 INELFEVALNESKS-SPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQ 746 (1251)
Q Consensus 690 ~~~l~evl~ses~~-~P~Ilf~~die~~l~~~--------~~~~~~l~~~L~~L~g---~VvvIgs~~~ 746 (1251)
+..+|+-+.. . .|.||||||+|.++... ..+...|...|++... +++||+++|+
T Consensus 46 i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 46 IRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 4445555444 4 49999999999977765 6777888888888865 6999999994
No 263
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.16 E-value=5.9e-06 Score=93.70 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=101.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--E----EEEecc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--F----INISMS 1018 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~--f----i~V~~s 1018 (1251)
...++++++.+++...+.++... .+- .++|+|||||||||....+.|..+-.+ + ..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 44677888999988888886432 111 389999999999999999999988543 1 223332
Q ss_pred cccccccCchHHHHHHHHHHHHh-------cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEE
Q 000858 1019 SITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1251)
Q Consensus 1019 ~L~s~~~G~se~~I~~lF~~A~k-------~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~Vl 1091 (1251)
+-.+ .+ ....--..|..++. ..+..|++||.|.+. ...+.++++++..+. .++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~t-----------~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKYT-----------ANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHhc-----------cceE
Confidence 2111 11 11122234554442 256799999999883 234556665544432 4567
Q ss_pred EEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhc
Q 000858 1092 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1135 (1251)
Q Consensus 1092 VIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~ 1135 (1251)
++..+|.+..+.+++++||. .+.+.+.+...-...+.+++..+
T Consensus 164 F~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred EEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence 77778999999999999884 56666666555555555555443
No 264
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.13 E-value=4.8e-05 Score=93.48 Aligned_cols=197 Identities=17% Similarity=0.265 Sum_probs=112.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc---
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 1021 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~--- 1021 (1251)
..+.+|+.-..+-.++++.++...+ .. ..+.+-+||+||+|||||++++.+|+++|+.+++...+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~------~~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMF------SG---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHh------cc---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 3567788888877788888776311 11 12234589999999999999999999999988876433220
Q ss_pred ----ccccCch---H---HHHHHHHH-----HHHh-----------cCCceEEEccccccccCCCCCchHHHHHHHHHhH
Q 000858 1022 ----SKWFGEG---E---KYVKAVFS-----LASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1251)
Q Consensus 1022 ----s~~~G~s---e---~~I~~lF~-----~A~k-----------~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~L 1075 (1251)
..+.+.. + ..+. .|. .++. ..+.||+|+|+-.++.. .....+.++.++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~-~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-----~~~~f~~~L~~~ 159 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSD-KFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-----DTSRFREALRQY 159 (519)
T ss_pred ccccccccccccccccccchhh-hhccccccccccccccccCCCcCCCceEEEeeccccccch-----hHHHHHHHHHHH
Confidence 0111110 0 0111 121 1111 23579999999755421 113444555555
Q ss_pred HhhccCCcccCCc-cEEEEEec-------CCC--------CCCcHHHHhcc-cccccCCCCCHHHHHHHHHHHHhhc---
Q 000858 1076 MVNWDGLRTKDKE-RVLVLAAT-------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE--- 1135 (1251)
Q Consensus 1076 L~~ldgl~~k~~~-~VlVIaTT-------N~p--------~~Ld~aLlrRF-~~~I~l~lPd~eeR~eIL~~ll~k~--- 1135 (1251)
+.. ... +++||.+- |.. ..+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 160 l~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 160 LRS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred HHc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 432 113 67777771 111 13556666622 2467888877777777777777665
Q ss_pred -----ccCChh-cHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000858 1136 -----ELASDV-DLEGIANMADGYSGSDLKNLCVTAAH 1167 (1251)
Q Consensus 1136 -----~l~~dv-dl~~LA~~T~GySgaDL~~L~~~Aa~ 1167 (1251)
...... .++.|+..+.| ||+..+.....
T Consensus 233 ~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf 266 (519)
T PF03215_consen 233 SSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQF 266 (519)
T ss_pred hcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHH
Confidence 111112 36778777655 55555444433
No 265
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.11 E-value=7e-06 Score=95.56 Aligned_cols=111 Identities=21% Similarity=0.340 Sum_probs=65.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCc---hHHHHHHHHHHHHhcCCceEEEccccccccC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~---se~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1058 (1251)
.+++|+||+|+|||+||.+||+++ |..++.++..++....... ........+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888888887765532110 000111112222 235799999997652
Q ss_pred CCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC-CCC----CcHHHHhcc
Q 000858 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFD----LDEAVVRRL 1110 (1251)
Q Consensus 1059 r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-p~~----Ld~aLlrRF 1110 (1251)
.++...+.+..+++..... . .-+|.|||. +.. +++.+.+|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~---------~-k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR---------Q-KKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC---------C-CCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1222233444444443321 1 235566664 332 345666665
No 266
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.08 E-value=3e-05 Score=96.97 Aligned_cols=176 Identities=28% Similarity=0.335 Sum_probs=100.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-EEeccc---cccccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-NISMSS---ITSKWF 1025 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi-~V~~s~---L~s~~~ 1025 (1251)
.|.|.+.+|+.|.-.+.-... .....+...+---+|||.|.||+|||.|.+.+++.+-..++ ...++. |.....
T Consensus 287 sIyG~e~VKkAilLqLfgGv~--k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVK--KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCc--ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 578999999988544321111 11111111222346999999999999999999988743322 222111 111000
Q ss_pred Cc---hHHHH-HHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhc--cCCcccCCccEEEEEecCCC
Q 000858 1026 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1026 G~---se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p 1099 (1251)
.. ++..+ .+.+-.| .++|..|||+|.+ +.....++...+.+-...+ .|+...-+.+.-|+||+|+.
T Consensus 365 rd~~tge~~LeaGALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~ 436 (682)
T COG1241 365 RDKVTGEWVLEAGALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPK 436 (682)
T ss_pred EccCCCeEEEeCCEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCC
Confidence 00 00000 0111122 3589999999988 3334444444444443333 24444445778899999975
Q ss_pred C-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhc
Q 000858 1100 F-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1135 (1251)
Q Consensus 1100 ~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eIL~~ll~k~ 1135 (1251)
. +|++.+++||+..+.+ ..|+.+.=..+.++.+...
T Consensus 437 ~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 437 FGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred CCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 4 5778999999976554 5577766666666665543
No 267
>PF13173 AAA_14: AAA domain
Probab=98.07 E-value=9e-06 Score=81.67 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg--~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
+-++|+||.|+|||++++.+++.+. -.++.+++.+.........+ +...|.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999998886 77888887664332111111 223332222225689999999877
No 268
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=1.9e-05 Score=91.87 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=85.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---cccc-cCchHHHH
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 1032 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~elg~-------------------------~fi~V~~s~L---~s~~-~G~se~~I 1032 (1251)
+-+..+||+||+|+|||++|+.+|+.+.+ .|+.+....- .++. ....-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999998743 1333332110 0000 00124467
Q ss_pred HHHHHHHHhc----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHh
Q 000858 1033 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108 (1251)
Q Consensus 1033 ~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr 1108 (1251)
+.+...+... ...|++||+++.| +. ...+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d~-------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----NL-------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----CH-------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7777666542 2359999999988 21 22233444444332 235677788888899999999
Q ss_pred cccccccCCCCCHHHHHHHHHH
Q 000858 1109 RLPRRLMVNLPDAPNREKIIRV 1130 (1251)
Q Consensus 1109 RF~~~I~l~lPd~eeR~eIL~~ 1130 (1251)
|+ ..+.|++|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 98 6888999998887776653
No 269
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.05 E-value=2e-05 Score=90.98 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=48.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCch-HHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~s-e~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
.+|++|+||+|+|||+||.|||+++ |..+..+..++++...-... ...+...+... ....+|+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 4689999999999999999999998 78888888777654321110 01122233332 24579999999753
No 270
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.05 E-value=8.9e-06 Score=99.34 Aligned_cols=178 Identities=24% Similarity=0.332 Sum_probs=111.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccc-----cccccCchHHHHHHHHHHHHh-----cCCceEEEccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-----TSKWFGEGEKYVKAVFSLASK-----IAPSVVFVDEV 1052 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el--g~~fi~V~~s~L-----~s~~~G~se~~I~~lF~~A~k-----~~PsILfIDEI 1052 (1251)
-.+||.|.+||||-.|+++|.... .-||+.++|..+ .+.+||.........+..-++ ...+.+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 359999999999999999997666 579999999764 344555433322222222211 12379999999
Q ss_pred cccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCC-------CCcHHHHhcccccccCCCCCHHHHH
Q 000858 1053 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNRE 1125 (1251)
Q Consensus 1053 D~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~-------~Ld~aLlrRF~~~I~l~lPd~eeR~ 1125 (1251)
..| +-..+..+.+++++-...--|... .+..|.||+||++.- .+-+.+.=|+ ..+.+.+|...+|.
T Consensus 417 gd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~ 489 (606)
T COG3284 417 GDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERS 489 (606)
T ss_pred hhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhccc
Confidence 987 445666777777777665545444 568899999998741 2223333344 35667778877765
Q ss_pred H---HHHHHHhhccc-CChhcHHHHHHHcC-CC--cHHHHHHHHHHHHhhh
Q 000858 1126 K---IIRVILAKEEL-ASDVDLEGIANMAD-GY--SGSDLKNLCVTAAHCP 1169 (1251)
Q Consensus 1126 e---IL~~ll~k~~l-~~dvdl~~LA~~T~-Gy--SgaDL~~L~~~Aa~~a 1169 (1251)
+ +|..++.+... .-..+-+.++.... .| +.++|.++++.++..+
T Consensus 490 d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 490 DRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred ccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 4 55555554332 12233334443332 12 5578888888887544
No 271
>PRK06526 transposase; Provisional
Probab=98.04 E-value=8e-06 Score=91.91 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCc-hHHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
..+++|+||||||||+||.+|+.++ |..++.+++.++....... ....+...+... ..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 3689999999999999999998876 6777666666554432110 001112222221 34689999999876
No 272
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.6e-05 Score=90.38 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=87.5
Q ss_pred CCCeEEEEcChhhhhccC--hhhHHHHHHHHhcC-------CCCEEEEeeccCCCcccccCCCCCceeeccCcchhhhcc
Q 000858 703 SSPLIVFVKDIEKSLTGN--NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLD 773 (1251)
Q Consensus 703 ~~P~Ilf~~die~~l~~~--~~~~~~l~~~L~~L-------~g~VvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d 773 (1251)
..-++||||+.|-+||.. +.+-...++.|.+| +..+|++-|+|
T Consensus 442 ~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN---------------------------- 493 (630)
T KOG0742|consen 442 RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN---------------------------- 493 (630)
T ss_pred ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC----------------------------
Confidence 667899999999999943 44555678888888 44788888999
Q ss_pred ccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcc-----------cchhHHH
Q 000858 774 LAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ-----------SNIISIR 840 (1251)
Q Consensus 774 ~~~Pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR-----------~~Il~Ih 840 (1251)
+|-++| -+++.+|..+|++++|..|...+ +..-.-|+..|+.++. .+-++|.
T Consensus 494 --rpgdlD-------------sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~ 558 (630)
T KOG0742|consen 494 --RPGDLD-------------SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLA 558 (630)
T ss_pred --Cccchh-------------HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeec
Confidence 444454 56778888999999999988766 3323445556665553 1222221
Q ss_pred HHhhhCCCCcccchhhhcccCCCCHHHHHHHHhh
Q 000858 841 SVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGW 874 (1251)
Q Consensus 841 T~l~~~~l~~~dLe~La~~tkg~sgadI~~Lv~~ 874 (1251)
+.+.+..+.+.|.+|.||+|-+|..|+-.
T Consensus 559 -----~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 559 -----GFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred -----cchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 11234567789999999999999998743
No 273
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.00 E-value=5.5e-06 Score=88.39 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCch-HHHHHHHHHHHHhcCCceEEEccccc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~s-e~~I~~lF~~A~k~~PsILfIDEID~ 1054 (1251)
...+++|+||+|+|||+||.+|++++ |..+..++..+|+...-... .......+.... ...+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 34689999999999999999999877 88888999888765432110 111223333333 357999999964
No 274
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.00 E-value=2.7e-05 Score=77.24 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=47.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecccccc--------------ccc--CchHHHHHHHHHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS--------------KWF--GEGEKYVKAVFSLAS 1040 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el--------g~~fi~V~~s~L~s--------------~~~--G~se~~I~~lF~~A~ 1040 (1251)
..++|+||+|+|||++++.++..+ ..+++.++++.... ... .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999887 67888888754221 001 112333444445555
Q ss_pred hcCCceEEEccccccc
Q 000858 1041 KIAPSVVFVDEVDSML 1056 (1251)
Q Consensus 1041 k~~PsILfIDEID~L~ 1056 (1251)
.....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999974
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.1e-06 Score=94.80 Aligned_cols=75 Identities=31% Similarity=0.326 Sum_probs=60.2
Q ss_pred cccCCCccccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 000858 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1251)
Q Consensus 442 ~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~ 521 (1251)
-++|+.+..=-||+-=|= -+-|+-|++=|.+-|+-.++ +-..+|=+-+|=|||-|||| .....|.||||+++.+|
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 356676767778885443 67788888877777776655 45679999999999999999 68999999999999888
No 276
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.94 E-value=3e-05 Score=87.39 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=48.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCchHH-HH-HHHHHHHHhcCCceEEEcccccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YV-KAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~se~-~I-~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
+.+++|+||||+|||+||.||++++ |..++.+..++++...-..... .. ..+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4689999999999999999999888 7889999988876642211100 01 1111111 23479999999765
No 277
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=97.94 E-value=1.4e-05 Score=67.29 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.2
Q ss_pred eEEccCC-ccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeec
Q 000858 154 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVH 207 (1251)
Q Consensus 154 ~t~G~~~-~cd~~~~d~~~s~~~c~l~~~~~~~~~~a~le~~~-~~g~v~vNg~~~ 207 (1251)
++|||.. .||+.++++.+|..||+|..... + ..+|++.+ .+|+ +|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~--~~~i~d~~s~~gt-~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-G--RFYLIDLGSTNGT-FVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-C--eEEEEECCCCCCe-eECCEEC
Confidence 5899999 99999999999999999987533 3 47899999 7788 7999875
No 278
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.94 E-value=1.7e-05 Score=99.73 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=71.5
Q ss_pred CCCceee---ecceeEEccCCccce-----eecCCCCCccceEEEEeecCCcceEEEEEecC-CceEEEcCee-----cC
Q 000858 143 QNSHLSM---TGAVFTVGHNRQCDL-----YLKDPSISKNLCRLRRIENGGPSGALLEITGG-KGEVEVNGNV-----HP 208 (1251)
Q Consensus 143 ~~p~~~i---~~~~~t~G~~~~cd~-----~~~d~~~s~~~c~l~~~~~~~~~~a~le~~~~-~g~v~vNg~~-----~~ 208 (1251)
+...++| -+--|.|||..+||+ .++|+.+|..|.+|... ++. .||||.+| ||| +|||+. +.
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~--~~~~Dl~S~nGT-~v~~~~~~r~~~~ 619 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYK--DGA--FFLMDLRSEHGT-YVTDNEGRRYRAT 619 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEE--CCE--EEEEECCCCCcc-EEeCCCCceEecC
Confidence 3456888 567899999999997 99999999999999976 333 89999887 899 699888 45
Q ss_pred CCceEEeeCCCEEEEccCCCeeE
Q 000858 209 KDSQVVLRGGDELVFSPSGKHSY 231 (1251)
Q Consensus 209 k~~~~~L~~gdev~f~~~~~~ay 231 (1251)
-|..+.|++||+|.|+..++.+|
T Consensus 620 p~~~~~l~~~d~I~~g~~~~~~f 642 (668)
T PLN02927 620 PNFPARFRSSDIIEFGSDKKAAF 642 (668)
T ss_pred CCCceEeCCCCEEEeCCCcceeE
Confidence 67799999999999999877555
No 279
>PRK09183 transposase/IS protein; Provisional
Probab=97.94 E-value=2.3e-05 Score=88.44 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCc-hHHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
..+++|+||+|+|||+||.+|+..+ |..+..+++.++...+... ....+..+|... ...+.+|+|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3579999999999999999997664 7777777776665332110 011233444433 235689999999865
No 280
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.92 E-value=6.8e-05 Score=88.90 Aligned_cols=210 Identities=21% Similarity=0.244 Sum_probs=120.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE---------Eeccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------ISMSS 1019 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l-~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~---------V~~s~ 1019 (1251)
+|.|.+++|+.|.-++.-.. +.-...|. .+-.-+|+|.|.||+.|+.|.++|.+-.-.-.+. +.++-
T Consensus 343 EIyGheDVKKaLLLlLVGgv---d~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGV---DKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCC---CCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 68999999999866543211 11010111 1223459999999999999999998766322221 22111
Q ss_pred ccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhh--ccCCcccCCccEEEEEecC
Q 000858 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTKDKERVLVLAATN 1097 (1251)
Q Consensus 1020 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~--ldgl~~k~~~~VlVIaTTN 1097 (1251)
+.....|+.. .-.+.+-.|. .+|..|||+|.+. .....+.-.++.+-... -.|+.+.-+.+.-|+|++|
T Consensus 420 mkDpvTgEM~-LEGGALVLAD---~GICCIDEfDKM~-----e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 420 MKDPVTGEMV-LEGGALVLAD---GGICCIDEFDKMD-----ESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hcCCCCCeeE-eccceEEEcc---CceEeehhhhhhh-----hhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 1111111110 0001122233 3899999999993 22333444454443333 3466666668889999998
Q ss_pred CCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhh--cccCCh-----hcH------HHHHHHc
Q 000858 1098 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK--EELASD-----VDL------EGIANMA 1150 (1251)
Q Consensus 1098 ~p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eIL~~ll~k--~~l~~d-----vdl------~~LA~~T 1150 (1251)
+.. .|+.++++||+..|.+ +.|+.+.-..+.+++.-- ..-.+. ++. -.+|+..
T Consensus 491 PayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~ 570 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRK 570 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhc
Confidence 632 6889999999976555 678887777776665422 111111 222 2344555
Q ss_pred CCCcHHHHHHHHHHHHhhhhH
Q 000858 1151 DGYSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1151 ~GySgaDL~~L~~~Aa~~air 1171 (1251)
..+.+.+|..-+..|-....+
T Consensus 571 ~P~vp~~l~dyi~~AYv~~Rr 591 (721)
T KOG0482|consen 571 NPVVPEALADYITGAYVELRR 591 (721)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 567778888777766544333
No 281
>PRK06921 hypothetical protein; Provisional
Probab=97.91 E-value=2.4e-05 Score=88.71 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=44.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~ 1054 (1251)
.+++|+|++|+|||+|+.+||+++ +..++.+...+++....... ......+.. -....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 579999999999999999999886 56777777655543211100 011111111 12458999999954
No 282
>PF05729 NACHT: NACHT domain
Probab=97.89 E-value=7.4e-05 Score=76.44 Aligned_cols=140 Identities=16% Similarity=0.278 Sum_probs=73.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------CcE-EEEecccccccc------------cCchHHHHHH-HHHHHHhcC
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAG--------ANF-INISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 1043 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg--------~~f-i~V~~s~L~s~~------------~G~se~~I~~-lF~~A~k~~ 1043 (1251)
-++|+|+||+|||++++.++..+. ..+ +.+.+..+.... .......+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987771 122 233332221110 0011111122 122333445
Q ss_pred CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhccc--ccccCCCCCH
Q 000858 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 1121 (1251)
Q Consensus 1044 PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~--~~I~l~lPd~ 1121 (1251)
..+|+||.+|.+...... ........++..++.. ... .++.+|.|+.. ..... +.+++. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~~----~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--ALP----PGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--ccC----CCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 678999999998532211 0111222333333322 011 23344444432 22222 334332 3578888899
Q ss_pred HHHHHHHHHHHhh
Q 000858 1122 PNREKIIRVILAK 1134 (1251)
Q Consensus 1122 eeR~eIL~~ll~k 1134 (1251)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 283
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.88 E-value=2.7e-06 Score=99.18 Aligned_cols=175 Identities=26% Similarity=0.340 Sum_probs=85.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-----cccccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS-----SITSKW 1024 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s-----~L~s~~ 1024 (1251)
.|.|.+.+|..|.-.+.-.... ....+...+-.-+|||.|.||+|||.|.+.+++.....+ .+++. .|....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~--~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEK--NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SC--CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhcccc--ccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 5788888877663222111110 000001122335799999999999999998876553333 22221 121110
Q ss_pred cC---chHHHH-HHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhcc--CCcccCCccEEEEEecCC
Q 000858 1025 FG---EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNR 1098 (1251)
Q Consensus 1025 ~G---~se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ld--gl~~k~~~~VlVIaTTN~ 1098 (1251)
.. ..+..+ .+.+-.|.+ +|++|||+|.+ .......+..++.+-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 00 011111 124445544 99999999988 33334444444443332222 222223467889999987
Q ss_pred CC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHHhhc
Q 000858 1099 PF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1135 (1251)
Q Consensus 1099 p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eIL~~ll~k~ 1135 (1251)
.. .+++.+++||+.++.+ +.|+.+.-..+.++++...
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 54 4777899999977654 6677776677777776553
No 284
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.85 E-value=8.8e-05 Score=90.80 Aligned_cols=173 Identities=19% Similarity=0.194 Sum_probs=93.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eecccccc--cccC
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITS--KWFG 1026 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~-V~~s~L~s--~~~G 1026 (1251)
.|.+++++|+.|.-.+. =.....+.+++-.+..-+|||+|.||||||.|.+.+++-+-.-.+. -.++.-.+ .++.
T Consensus 430 sIye~edvKkglLLqLf--GGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLF--GGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHh--cCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 57899999988754332 1222223333323344579999999999999999999877221110 00000000 0000
Q ss_pred chHHHHHHHHHHH---HhcCCceEEEccccccccCCCCCchHHHHHHHHHhH--HhhccCCcccCCccEEEEEecCCCC-
Q 000858 1027 EGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRPF- 1100 (1251)
Q Consensus 1027 ~se~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~L--L~~ldgl~~k~~~~VlVIaTTN~p~- 1100 (1251)
. ....+++.-+. --...+|..|||+|+| +......+..++++- -....|+-..-+.+.-|||++|+..
T Consensus 508 r-d~dtkqlVLesGALVLSD~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 K-DPDTRQLVLESGALVLSDNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred e-cCccceeeeecCcEEEcCCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 0 00000000000 0123479999999998 222333444444332 2233455444467788999998532
Q ss_pred ------------CCcHHHHhcccccc-cCCCCCHHHHHHHHHH
Q 000858 1101 ------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRV 1130 (1251)
Q Consensus 1101 ------------~Ld~aLlrRF~~~I-~l~lPd~eeR~eIL~~ 1130 (1251)
.|++.|++||+.++ .++.||...-+.|-.+
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHH
Confidence 57899999998654 3466765533333333
No 285
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.85 E-value=6.8e-05 Score=76.07 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=47.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------------ccC--chHHHHHHHHHHH
Q 000858 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFG--EGEKYVKAVFSLA 1039 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~----------------------~~G--~se~~I~~lF~~A 1039 (1251)
++|+||||+|||+++..++..+ +.+++.++....... ... .........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 566666665432110 000 1111222345556
Q ss_pred HhcCCceEEEcccccccc
Q 000858 1040 SKIAPSVVFVDEVDSMLG 1057 (1251)
Q Consensus 1040 ~k~~PsILfIDEID~L~~ 1057 (1251)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667889999999998863
No 286
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.83 E-value=4.5e-05 Score=86.73 Aligned_cols=139 Identities=21% Similarity=0.332 Sum_probs=78.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEecccccccccCchHHHHHHHHHHH----H-------hcCCceEEEc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVVFVD 1050 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg-~~--fi~V~~s~L~s~~~G~se~~I~~lF~~A----~-------k~~PsILfID 1050 (1251)
+.+||+||+|||||++++.+...+. .. ...++++... ....+..+.+.. + ..+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999999877663 22 2334443311 112222222111 0 0123599999
Q ss_pred cccccccCCCCCchHHHHHHHHHhHHhhccCCcccC------CccEEEEEecCCC---CCCcHHHHhcccccccCCCCCH
Q 000858 1051 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD------KERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 1121 (1251)
Q Consensus 1051 EID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~------~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~l~lPd~ 1121 (1251)
|+..-. .+.-+.+. ...++.+++.. .|+.... =.++.+||++++. ..+++.++|.| .++.++.|+.
T Consensus 108 DlN~p~--~d~ygtq~-~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMPQ--PDKYGTQP-PIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--H-HHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCCC--CCCCCCcC-HHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 998542 22222222 22444444432 2222211 1468899998764 35888999988 6899999999
Q ss_pred HHHHHHHHHHHhh
Q 000858 1122 PNREKIIRVILAK 1134 (1251)
Q Consensus 1122 eeR~eIL~~ll~k 1134 (1251)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988865
No 287
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.82 E-value=0.00011 Score=81.74 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=75.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCch
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1064 (1251)
.+-.++||.|||||.+++++|+.+|.+++.++|.+.++ ...+.++|.-+... .+-+.+||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46789999999999999999999999999999987543 35677777766654 488999999988 2111
Q ss_pred HHHHHHHHHhHHhhccC---------CcccCCccEEEEEecCC----CCCCcHHHHhcccccccCCCCCHHHHHHH
Q 000858 1065 HEAMRKMKNEFMVNWDG---------LRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKI 1127 (1251)
Q Consensus 1065 ~e~~~~il~~LL~~ldg---------l~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eI 1127 (1251)
-......+..+...+.. ....-+..+-+..|.|+ ...|++.++.-| +.+.+..||.....++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 11222222222222211 10011223455566663 357888888777 7788888987655443
No 288
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.69 E-value=0.00029 Score=79.49 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=82.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--Cc---EEEEeccc--------cccc---c------cCchHHHHHHHHHH
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATE--AG--AN---FINISMSS--------ITSK---W------FGEGEKYVKAVFSL 1038 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e--lg--~~---fi~V~~s~--------L~s~---~------~G~se~~I~~lF~~ 1038 (1251)
...-|.|+|++|+|||+||..+++. .. +. ++.+.... +... . ....+.....+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4466999999999999999999977 32 22 22222211 1000 0 11123333344443
Q ss_pred HHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000858 1039 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1251)
Q Consensus 1039 A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1118 (1251)
-...+.+|+||+++... .+..+...+.. ...+..||.||....... .+... ...+.+..
T Consensus 98 -L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 98 -LKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVAG-SLGGT-DKVIELEP 156 (287)
T ss_dssp -HCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGGT-THHSC-EEEEECSS
T ss_pred -hccccceeeeeeecccc--------------ccccccccccc----cccccccccccccccccc-ccccc-cccccccc
Confidence 33448999999997541 11222211111 112456677776543221 11111 35688889
Q ss_pred CCHHHHHHHHHHHHhhcc----cCChhcHHHHHHHcCCCcHHHHHHH
Q 000858 1119 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNL 1161 (1251)
Q Consensus 1119 Pd~eeR~eIL~~ll~k~~----l~~dvdl~~LA~~T~GySgaDL~~L 1161 (1251)
.+.++-.++|........ ...+.....|+..+.|+ +-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999998876543 11233467888888775 4444444
No 289
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=97.66 E-value=0.00019 Score=76.56 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=63.6
Q ss_pred eeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeecCCCceEEeeCCCEEEEcc
Q 000858 147 LSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVFSP 225 (1251)
Q Consensus 147 ~~i~~~~~t~G~~~~cd~~~~d~~~s~~~c~l~~~~~~~~~~a~le~~~-~~g~v~vNg~~~~k~~~~~L~~gdev~f~~ 225 (1251)
..+....+|+||+..+|+.|+|+.+|..||.|+..+.. .+||+.+ +||| +|||.++.. .+.|+.||.|.|+.
T Consensus 84 ~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt-~vn~~~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 84 IVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGT-YVNGEKVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred cccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcce-EECCeEccC--cEEcCCCCEEEECc
Confidence 34445699999999999999999999999999987544 6667766 5688 799999998 89999999999987
Q ss_pred CCC
Q 000858 226 SGK 228 (1251)
Q Consensus 226 ~~~ 228 (1251)
...
T Consensus 157 ~~~ 159 (191)
T COG1716 157 TLA 159 (191)
T ss_pred cce
Confidence 765
No 290
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.66 E-value=0.00027 Score=86.12 Aligned_cols=216 Identities=18% Similarity=0.222 Sum_probs=122.8
Q ss_pred chhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHH
Q 000858 926 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAV 1004 (1251)
Q Consensus 926 ~~~e~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l-~~P~~gVLL~GPPGTGKT~LAkAI 1004 (1251)
......+.+...+.| .|.|.+.+|.-|.-.+.--.... ...+. .+---+|+|.|.||+||+-+.+++
T Consensus 331 ~~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~---a~eg~~lRGDinv~iVGDPgt~KSQfLk~v 398 (764)
T KOG0480|consen 331 KDENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKS---AGEGTSLRGDINVCIVGDPGTGKSQFLKAV 398 (764)
T ss_pred cCchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCcccc---CCCCccccCCceEEEeCCCCccHHHHHHHH
Confidence 344455555555554 68999999988755443211111 11111 122245999999999999999999
Q ss_pred HHHhCCcEEEEe-c---ccccccccCch---HHHH-HHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHH
Q 000858 1005 ATEAGANFINIS-M---SSITSKWFGEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1251)
Q Consensus 1005 A~elg~~fi~V~-~---s~L~s~~~G~s---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL 1076 (1251)
+.-+-..++..- . +-|....+... +-.+ .+..-.|. .+|..|||+|.+ +..+|.++...+.+-.
T Consensus 399 ~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLAD---nGICCIDEFDKM-----d~~dqvAihEAMEQQt 470 (764)
T KOG0480|consen 399 CAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLAD---NGICCIDEFDKM-----DVKDQVAIHEAMEQQT 470 (764)
T ss_pred hccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEcc---CceEEechhccc-----ChHhHHHHHHHHHhhe
Confidence 876633332211 1 01111000000 0000 01112222 389999999998 3334555555554433
Q ss_pred hhc--cCCcccCCccEEEEEecCCCC-------------CCcHHHHhccccc-ccCCCCCHHHHHHHHHHHHhhcccCCh
Q 000858 1077 VNW--DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRR-LMVNLPDAPNREKIIRVILAKEELASD 1140 (1251)
Q Consensus 1077 ~~l--dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRF~~~-I~l~lPd~eeR~eIL~~ll~k~~l~~d 1140 (1251)
..+ .|+...-+.+.-|||++|+.. .+...+++||+.. |-++-|+...-..|-++++......++
T Consensus 471 ISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~ 550 (764)
T KOG0480|consen 471 ISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD 550 (764)
T ss_pred ehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc
Confidence 333 233333356778999998742 5778999999864 455788888888888888766432221
Q ss_pred hcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000858 1141 VDLEGIANMADGYSGSDLKNLCVTAA 1166 (1251)
Q Consensus 1141 vdl~~LA~~T~GySgaDL~~L~~~Aa 1166 (1251)
. ......|+..+++..+.-|.
T Consensus 551 ~-----~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 551 A-----TERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred c-----ccccccccHHHHHHHHHHHH
Confidence 1 11124677778777777664
No 291
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00058 Score=78.26 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=77.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe--------cccccccc-cC----chHHHHHHHHHHHHhcC----Cc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS--------MSSITSKW-FG----EGEKYVKAVFSLASKIA----PS 1045 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~--------~s~L~s~~-~G----~se~~I~~lF~~A~k~~----Ps 1045 (1251)
-+..+||+||.|+||+.+|.++|..+-+.-..-. -+++.--. .+ -.-..++.+...+...+ --
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 4567999999999999999999988844210000 11211000 01 12335566655554332 25
Q ss_pred eEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000858 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1251)
Q Consensus 1046 ILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lP 1119 (1251)
|++||++|.|- ....|.|+..++. ++.++++|..|+.++.|.+.+++|+ ..+.|+.+
T Consensus 98 v~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred EEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 99999999982 2234555555554 3467889999999999999999998 45666554
No 292
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.63 E-value=9.2e-05 Score=82.78 Aligned_cols=132 Identities=24% Similarity=0.368 Sum_probs=80.1
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCcEEEEeccccccc-----ccCchHHHHHHHHHHHH--------hcCCc
Q 000858 985 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLAS--------KIAPS 1045 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA------~elg~~fi~V~~s~L~s~-----~~G~se~~I~~lF~~A~--------k~~Ps 1045 (1251)
..+||.||.|.||++||+.|. +++.-+|++++|+.+.+. .+| .++..|.-|+ ....+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhccCCCc
Confidence 359999999999999999984 445789999999988654 222 2344443332 22358
Q ss_pred eEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC-------CCCCcHHHHhcccccccCCC
Q 000858 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNL 1118 (1251)
Q Consensus 1046 ILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-------p~~Ld~aLlrRF~~~I~l~l 1118 (1251)
+||+|||..|. ..++..+.+.+.+-...--|........+-+|+-|-+ ...+-+.+..|+ ..+.|.+
T Consensus 285 mlfldeigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~l 358 (531)
T COG4650 285 MLFLDEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTL 358 (531)
T ss_pred eEehHhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeec
Confidence 99999999883 2344444444443222111111112244556665532 123334455566 3677888
Q ss_pred CCHHHHHH
Q 000858 1119 PDAPNREK 1126 (1251)
Q Consensus 1119 Pd~eeR~e 1126 (1251)
|...+|.+
T Consensus 359 pgl~qr~e 366 (531)
T COG4650 359 PGLRQRQE 366 (531)
T ss_pred cccccCcc
Confidence 88877765
No 293
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00051 Score=71.89 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
..|+++|+||+|||+++..|+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 579999999999999999999877
No 294
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0028 Score=73.28 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=82.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecccccccccCchHHHHHHHHHHHHhc-----CCc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APS 1045 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~elg~-------------~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~-----~Ps 1045 (1251)
...+||+|+.|.||+.+|+++++.+-+ .++.++.. +.. ..-..++.+.+.+... ..-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCce
Confidence 356899999999999999999988732 12223200 111 1123444544444222 346
Q ss_pred eEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHH
Q 000858 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1125 (1251)
Q Consensus 1046 ILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~ 1125 (1251)
|++||++|.+- ....+.|+..++.. +..+++|.+|+.++.+-+++++|+ .++.+.+++.++-.
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999999871 12334566665552 356777777778889999999998 67899999888776
Q ss_pred HHHHH
Q 000858 1126 KIIRV 1130 (1251)
Q Consensus 1126 eIL~~ 1130 (1251)
+.+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 66553
No 295
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0025 Score=73.28 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=76.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EE---------ecccccccc-cC--chHHHHHHHHHHHHhc
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NI---------SMSSITSKW-FG--EGEKYVKAVFSLASKI 1042 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi-------~V---------~~s~L~s~~-~G--~se~~I~~lF~~A~k~ 1042 (1251)
+.+..+||+|| .||+.+|.++|..+-+.-. .+ +-+++.--. .| -.-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34567999996 6899999999987733110 00 012211000 01 1234566665555432
Q ss_pred ----CCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCC
Q 000858 1043 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1251)
Q Consensus 1043 ----~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1118 (1251)
...|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.+.+.+++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 23699999999982 2334566666654 3356888889988999999999999 5777754
Q ss_pred CCHHH
Q 000858 1119 PDAPN 1123 (1251)
Q Consensus 1119 Pd~ee 1123 (1251)
+.++
T Consensus 163 -~~~~ 166 (290)
T PRK07276 163 -NEAY 166 (290)
T ss_pred -cHHH
Confidence 4333
No 296
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.49 E-value=0.0037 Score=75.76 Aligned_cols=200 Identities=15% Similarity=0.198 Sum_probs=104.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 1019 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~------ 1019 (1251)
.+.+++.-...-+.++++++.. -..|.. + -+.+-+||+||+|||||+.++.|++++|..++...-+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~----~~~~~~-~--l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ----VAEFTP-K--LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH----HHHhcc-C--CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 3556666665555666665541 111111 1 12234899999999999999999999999998865221
Q ss_pred -ccccccCchH------HHHHHHHHHHHh------------cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhcc
Q 000858 1020 -ITSKWFGEGE------KYVKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1251)
Q Consensus 1020 -L~s~~~G~se------~~I~~lF~~A~k------------~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ld 1080 (1251)
+.....+-+. .....+...+.+ ..+.+|+|||+=..+... ..+..+.++..+. ..
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s~- 225 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-SI- 225 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-hc-
Confidence 1111111111 111122233322 134589999997664321 2334444444222 11
Q ss_pred CCcccCCccEEEEEec-CCCCCCcHHHHh--------cccccccCCCCCHHHHHHHHHHHHhhcccC-------ChhcHH
Q 000858 1081 GLRTKDKERVLVLAAT-NRPFDLDEAVVR--------RLPRRLMVNLPDAPNREKIIRVILAKEELA-------SDVDLE 1144 (1251)
Q Consensus 1081 gl~~k~~~~VlVIaTT-N~p~~Ld~aLlr--------RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-------~dvdl~ 1144 (1251)
...++++|.|- ..++..+...+. |+ .+|.|.+-...-..+.|+.++..+... ....++
T Consensus 226 -----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 226 -----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 12344444332 222333221111 44 357777777777778888877764322 133344
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhh
Q 000858 1145 GIANMADGYSGSDLKNLCVTAAHC 1168 (1251)
Q Consensus 1145 ~LA~~T~GySgaDL~~L~~~Aa~~ 1168 (1251)
.++... ++||+..+......
T Consensus 300 ~i~~~s----~GDIRsAInsLQls 319 (634)
T KOG1970|consen 300 LICQGS----GGDIRSAINSLQLS 319 (634)
T ss_pred HHHHhc----CccHHHHHhHhhhh
Confidence 455444 44666666555443
No 297
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.45 E-value=0.00043 Score=79.47 Aligned_cols=161 Identities=22% Similarity=0.373 Sum_probs=93.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEeccc--cc---
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT---EAGANFINISMSS--IT--- 1021 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~---elg~~fi~V~~s~--L~--- 1021 (1251)
.+.|..+..+.+.+++.+-. +..-...|+|.||.|+|||+|...... +.|-+|+.|.... ..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~----------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI----------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH----------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 45677777777777665311 122346799999999999997665533 5566666554321 11
Q ss_pred ----------------ccccCchHHHHHHHHHHHHhc----CCceEE-EccccccccCCCCCchHHHHHHHHHhHHhhcc
Q 000858 1022 ----------------SKWFGEGEKYVKAVFSLASKI----APSVVF-VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1251)
Q Consensus 1022 ----------------s~~~G~se~~I~~lF~~A~k~----~PsILf-IDEID~L~~~r~~~~~~e~~~~il~~LL~~ld 1080 (1251)
.+.+|.....+..+....+.. +..||| +||||..++.. + ++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------r---QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------R---QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------h---hHHHHHHH
Confidence 112333333344444333321 112555 57999875332 1 22333322
Q ss_pred CCcccCCccEEEEEecCCCCC---CcHHHHhccccc-ccC-CCCCHHHHHHHHHHHH
Q 000858 1081 GLRTKDKERVLVLAATNRPFD---LDEAVVRRLPRR-LMV-NLPDAPNREKIIRVIL 1132 (1251)
Q Consensus 1081 gl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~~~-I~l-~lPd~eeR~eIL~~ll 1132 (1251)
.+....+.++.||+.|.+.+. |...+.+||.++ |++ +.....+-..+++.++
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 233334588999999987654 456777799876 444 3345777777887776
No 298
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.39 E-value=0.00058 Score=84.06 Aligned_cols=88 Identities=30% Similarity=0.376 Sum_probs=74.8
Q ss_pred cceeEEccCCccceeecCCCCCccceEEEEeecCCc--------ceEEEEEecCC-ceEEEcCeecCCCceEEeeCCCEE
Q 000858 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGP--------SGALLEITGGK-GEVEVNGNVHPKDSQVVLRGGDEL 221 (1251)
Q Consensus 151 ~~~~t~G~~~~cd~~~~d~~~s~~~c~l~~~~~~~~--------~~a~le~~~~~-g~v~vNg~~~~k~~~~~L~~gdev 221 (1251)
...|+|||-..||+.+-+|+||..||.|.+- +.|. ...++-+.|+- || |+|.+++.+.+-+.++-|+.+
T Consensus 176 ~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~-~~~~~~p~~s~~~g~~i~dlgsThgt-~~NK~rvppk~yir~~Vg~v~ 253 (793)
T KOG1881|consen 176 AAACLFGRLGGCDVALEHPSISRFHAVLQYK-ASGPDDPCASNGEGWYIYDLGSTHGT-FLNKDRVPPKVYIRDRVGHVA 253 (793)
T ss_pred ceeEEecccCCCccccccCcccccceeeecc-CCCCCccccCCCCceEEeeccccccc-eeccccCCCcchhhhhHHHHH
Confidence 4789999999999999999999999998865 2332 24566666655 99 799999999999999999999
Q ss_pred EEccCCCeeEEeeecCcccC
Q 000858 222 VFSPSGKHSYIFQQLSDDTL 241 (1251)
Q Consensus 222 ~f~~~~~~ayif~~l~~~~~ 241 (1251)
-|+-+.+ .||||+.-.+..
T Consensus 254 ~fggsTr-l~i~Qgp~eD~E 272 (793)
T KOG1881|consen 254 RFGGSTR-LYIFQGPEEDEE 272 (793)
T ss_pred HhcCceE-EEEeeCCCcCCC
Confidence 9998887 999999876665
No 299
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.37 E-value=0.0027 Score=85.66 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=41.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~ 1010 (1251)
..+++++|++...++|...+... ....+-|-|+|++|+||||||+++++.+..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 35778999999999998877521 112356899999999999999999888743
No 300
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0019 Score=72.93 Aligned_cols=121 Identities=7% Similarity=0.021 Sum_probs=77.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--------------cccccccc---CchHHHHHHHHHHHHh---
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM--------------SSITSKWF---GEGEKYVKAVFSLASK--- 1041 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~--------------s~L~s~~~---G~se~~I~~lF~~A~k--- 1041 (1251)
.++..+||+||.|+||..+|.++|..+-+.--.-.| +++.--+. .-....++.+-.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456789999999999999999999887321100001 11111000 1122344444443322
Q ss_pred --cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCC
Q 000858 1042 --IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1251)
Q Consensus 1042 --~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lP 1119 (1251)
..--|++|+++|.|- ....+.|+..++. ++.++++|.+|+.++.+.+.+++|+ ..+.++.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 123699999999882 2345666666655 3467899999999999999999998 34556555
No 301
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.34 E-value=0.00023 Score=86.33 Aligned_cols=168 Identities=25% Similarity=0.361 Sum_probs=89.8
Q ss_pred hhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000858 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1251)
Q Consensus 927 ~~e~ek~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~ 1006 (1251)
...+..++++.+.| .|.|...+|..+--.+.--..+-. -.+.. .+---+|||.|.|||||+.+.+++++
T Consensus 436 d~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~-~~khk-vRGDinvLL~GDPGTaKSQFLKY~eK 504 (854)
T KOG0477|consen 436 DPPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNP-GGKHK-VRGDINVLLLGDPGTAKSQFLKYAEK 504 (854)
T ss_pred CccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCC-CCCce-eccceeEEEecCCCccHHHHHHHHHh
Confidence 33444555666655 578999999988655432111100 00000 11123499999999999999999998
Q ss_pred HhCCcEEEE---------eccc----ccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHH
Q 000858 1007 EAGANFINI---------SMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1251)
Q Consensus 1007 elg~~fi~V---------~~s~----L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~ 1073 (1251)
.....++.- .+.. +...|.-++ +.+-+|.+ +|.+|||+|.+-.+... ..++++.+ +
T Consensus 505 ~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqDRt-SIHEAMEQ--Q 573 (854)
T KOG0477|consen 505 TSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQDRT-SIHEAMEQ--Q 573 (854)
T ss_pred cCcceeEeccCCccccceeEEEeeCCccceeeecc-----CeEEEccC---ceEEeehhhhhcccccc-hHHHHHHh--c
Confidence 775444322 1111 122232211 12223444 89999999999322211 12232221 0
Q ss_pred hHHhhccCCcccCCccEEEEEecCCC-----------C--CCcHHHHhcccccccC
Q 000858 1074 EFMVNWDGLRTKDKERVLVLAATNRP-----------F--DLDEAVVRRLPRRLMV 1116 (1251)
Q Consensus 1074 ~LL~~ldgl~~k~~~~VlVIaTTN~p-----------~--~Ld~aLlrRF~~~I~l 1116 (1251)
.+...-.|+.+.-+.++.||||+|+. + +|.+.+++||+....+
T Consensus 574 SISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 574 SISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred chhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 11111112222223678999999872 1 5667888999854433
No 302
>PF14516 AAA_35: AAA-like domain
Probab=97.33 E-value=0.0023 Score=74.88 Aligned_cols=164 Identities=14% Similarity=0.166 Sum_probs=87.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccCc-------------------------------h
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-------------------------------G 1028 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~G~-------------------------------s 1028 (1251)
|..-+.|.||..+|||+|...+.+.+ |...+.+++..+....+.. .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44679999999999999999887665 7888888876542211111 1
Q ss_pred HHHHHHHHHHH---HhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHH
Q 000858 1029 EKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1105 (1251)
Q Consensus 1029 e~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1105 (1251)
.......|+.. ....|-||+|||||.++.... .......++..+...-.. .....++.+|.+......+...
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~---~~~dF~~~LR~~~~~~~~--~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ---IADDFFGLLRSWYEQRKN--NPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc---hHHHHHHHHHHHHHhccc--CcccceEEEEEecCcccccccC
Confidence 11223333321 223578999999999974321 111111112222111110 0111334444433222112111
Q ss_pred H-Hh--cccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCc
Q 000858 1106 V-VR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1154 (1251)
Q Consensus 1106 L-lr--RF~~~I~l~lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GyS 1154 (1251)
. .+ .+...+.++.-+.++-..+++.+-.. . ....++.|-..|.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH
Confidence 1 11 22345666777788888887776322 2 2333888999998864
No 303
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.33 E-value=0.00062 Score=80.53 Aligned_cols=102 Identities=22% Similarity=0.368 Sum_probs=56.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEeccccccc-------ccCchHHHHHHHHHHHHhcCCceEEEccc
Q 000858 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVVFVDEV 1052 (1251)
Q Consensus 981 ~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~-fi~V~~s~L~s~-------~~G~se~~I~~lF~~A~k~~PsILfIDEI 1052 (1251)
..+++|++|||++|+|||+|.-.....+... -..+.-..++.. +.+. ...+..+-....+ .-.||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHh-cCCEEEEeee
Confidence 3467999999999999999999998877431 111111111110 0111 1112222211111 2249999999
Q ss_pred cccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC
Q 000858 1053 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1053 D~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1099 (1251)
+.- +.+....+.+++..+.. ..+++|+|+|.+
T Consensus 137 ~V~-----DiaDAmil~rLf~~l~~----------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----DIADAMILKRLFEALFK----------RGVVLVATSNRP 168 (362)
T ss_pred ecc-----chhHHHHHHHHHHHHHH----------CCCEEEecCCCC
Confidence 753 33333444555554431 468999999873
No 304
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.31 E-value=0.00028 Score=69.09 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAG 1009 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg 1009 (1251)
|+|+||||+|||+||+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999988774
No 305
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.0047 Score=69.11 Aligned_cols=174 Identities=20% Similarity=0.204 Sum_probs=101.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccc-----ccc----cCc--------hHHHHHHHHHHHHhc-CC
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT-----SKW----FGE--------GEKYVKAVFSLASKI-AP 1044 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~~s~L~-----s~~----~G~--------se~~I~~lF~~A~k~-~P 1044 (1251)
-+.++|+-|+|||++.+++...++ ...+.++...+. ..+ ... .++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999997776663 222344432211 111 111 122233344444443 46
Q ss_pred ceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCC-c---HHHHhcccccccCCCCC
Q 000858 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL-D---EAVVRRLPRRLMVNLPD 1120 (1251)
Q Consensus 1045 sILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L-d---~aLlrRF~~~I~l~lPd 1120 (1251)
-++++||.+.|. ...-+.++.+.+ .-.+.. ..-.+++||-..-...+ - ..+..|+..+|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~n----l~~~~~--~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTN----LEEDSS--KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHh----hccccc--CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999882 222333332222 111111 11235555533211111 1 23334887678889999
Q ss_pred HHHHHHHHHHHHhhc----ccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 000858 1121 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1251)
Q Consensus 1121 ~eeR~eIL~~ll~k~----~l~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~air 1171 (1251)
.++-..+++..++.- .+.++.-+..+...+.|| +.-+.++|..|...+..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHH
Confidence 998999999998873 444566678888889884 77888888877655443
No 306
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.26 E-value=0.00042 Score=89.33 Aligned_cols=163 Identities=23% Similarity=0.273 Sum_probs=102.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccC-----c--hHHHHHHHHH---H--HHhcCCceEEEccccc
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVFS---L--ASKIAPSVVFVDEVDS 1054 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G-----~--se~~I~~lF~---~--A~k~~PsILfIDEID~ 1054 (1251)
+|++||||.|||+.+.++|.++|+.++.+|.++..++... . ....+...|. . .....-.||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6999999999999999999999999999998876544221 1 1123333330 0 0111124999999999
Q ss_pred cccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhh
Q 000858 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1055 L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k 1134 (1251)
+++ . . +..+..+...... ..+-||+++|.........+.|....++|..|+.+.+..-+..++..
T Consensus 440 ~~~-~-d-------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-E-D-------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-h-h-------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 864 1 1 1122222222211 23456777776655554444454456999999999988877777766
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000858 1135 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1251)
Q Consensus 1135 ~~l~-~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~ 1168 (1251)
+.+. .+..++.+.+.+ ++||++.+..-...
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 4433 455577777765 66777766555443
No 307
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.26 E-value=0.00096 Score=72.23 Aligned_cols=74 Identities=23% Similarity=0.419 Sum_probs=49.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc-----------------------CchHHHHHHHHH
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFS 1037 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~-----------------------G~se~~I~~lF~ 1037 (1251)
..-++|+||||+|||+++..++... +...+.++...+....+ .+....+..+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3458999999999999999987654 66778887754110000 011122444555
Q ss_pred HHHhcCCceEEEcccccccc
Q 000858 1038 LASKIAPSVVFVDEVDSMLG 1057 (1251)
Q Consensus 1038 ~A~k~~PsILfIDEID~L~~ 1057 (1251)
.+.+..+.+|+||-|..++.
T Consensus 92 ~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHhhcCccEEEEeCcHHHhH
Confidence 55566789999999998863
No 308
>PHA00729 NTP-binding motif containing protein
Probab=97.25 E-value=0.00056 Score=75.74 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~ 1011 (1251)
..|+|+|+||||||+||.+|++.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 379999999999999999999987633
No 309
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.25 E-value=0.0014 Score=69.16 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=45.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccC-----------------------chH-----
Q 000858 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-----------------------EGE----- 1029 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~------~~G-----------------------~se----- 1029 (1251)
+||+||||||||+|+..++.+. |.+++.++..+-... .+| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 666666654221000 000 000
Q ss_pred HHHHHHHHHHHhcCCceEEEcccccccc
Q 000858 1030 KYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1251)
Q Consensus 1030 ~~I~~lF~~A~k~~PsILfIDEID~L~~ 1057 (1251)
..+..+...+....|.+|+||++..++.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134455555667899999999988753
No 310
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.22 E-value=0.0045 Score=70.53 Aligned_cols=133 Identities=15% Similarity=0.183 Sum_probs=74.5
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccc---c
Q 000858 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSIT---S 1022 (1251)
Q Consensus 951 I~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s~L~---s 1022 (1251)
+.|+.-+++.+...+.-.+..+ . .+.|--+=|+|++||||.+.++.||+.+ ..+++..-.+.+. .
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 6777777777766665433322 1 2223457789999999999999999887 2333321111110 0
Q ss_pred cc-cCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC
Q 000858 1023 KW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1023 ~~-~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1099 (1251)
++ -...++....+-.-+...+.+|.++||+|.| . ..+..++.-|+.........+..+.++|.-+|.-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----p----~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----P----PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----C----HhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 00 0112333444555566677799999999998 2 2233334444432222222234567777777653
No 311
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.21 E-value=0.00098 Score=87.02 Aligned_cols=137 Identities=25% Similarity=0.289 Sum_probs=85.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------ccccc-cCc--hHH-HHHHHHHHHHhcCCceEEEccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKW-FGE--GEK-YVKAVFSLASKIAPSVVFVDEVDS 1054 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~------L~s~~-~G~--se~-~I~~lF~~A~k~~PsILfIDEID~ 1054 (1251)
+++||.|.||+|||.|+.|+|+..|..+++++.++ |++.. .++ ++- ....-|-.|.+. ..-|++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhh
Confidence 45999999999999999999999999999999865 22211 111 111 223344445443 46788999964
Q ss_pred cccCCCCCchHHHHHHHHHhHHhhccCC-------cccCCccEEEEEecCCC------CCCcHHHHhcccccccCCCCCH
Q 000858 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDA 1121 (1251)
Q Consensus 1055 L~~~r~~~~~~e~~~~il~~LL~~ldgl-------~~k~~~~VlVIaTTN~p------~~Ld~aLlrRF~~~I~l~lPd~ 1121 (1251)
- .+..+ .-++..+...... .-....+++|.||-|+. ..|+..++.||. ++.+...+.
T Consensus 1623 a--------SQSVl-EGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~lt~ 1692 (4600)
T COG5271 1623 A--------SQSVL-EGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDGLTT 1692 (4600)
T ss_pred h--------HHHHH-HHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEeccccc
Confidence 2 12221 1122222221111 11234678999998875 479999999994 666666665
Q ss_pred HHHHHHHHHHH
Q 000858 1122 PNREKIIRVIL 1132 (1251)
Q Consensus 1122 eeR~eIL~~ll 1132 (1251)
++...|....+
T Consensus 1693 dDi~~Ia~~~y 1703 (4600)
T COG5271 1693 DDITHIANKMY 1703 (4600)
T ss_pred chHHHHHHhhC
Confidence 55555555443
No 312
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.19 E-value=0.00085 Score=74.20 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=42.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc--cccc--------ccCchHHHHHHHHHHHHh--cCCceEE
Q 000858 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLASK--IAPSVVF 1048 (1251)
Q Consensus 981 ~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~--L~s~--------~~G~se~~I~~lF~~A~k--~~PsILf 1048 (1251)
.+-+..+||||+||+|||++|+.++. ..-++..+... +.+. .....-..+.+.+..+.. ....+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 34346699999999999999999862 23333343321 1100 001111223333333332 3357999
Q ss_pred Ecccccccc
Q 000858 1049 VDEVDSMLG 1057 (1251)
Q Consensus 1049 IDEID~L~~ 1057 (1251)
||+|+.|..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998753
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.13 E-value=0.022 Score=69.15 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc---------------cccCc-----hHHHHHHHHHHH
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---------------KWFGE-----GEKYVKAVFSLA 1039 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s---------------~~~G~-----se~~I~~lF~~A 1039 (1251)
+|..++|+|++|+|||+++..+|..+ |..+..+++..... ..++. ....+...+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45679999999999999999998877 55665555533211 01111 112234444444
Q ss_pred HhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccc-----c
Q 000858 1040 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR-----L 1114 (1251)
Q Consensus 1040 ~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~-----I 1114 (1251)
... .+|+||...++. .. ..++.++.....-.. ....++|+-++...+.++ ..++|... +
T Consensus 174 ~~~--DvVIIDTAGr~~------~d----~~lm~El~~l~~~~~--pdevlLVvda~~gq~av~--~a~~F~~~l~i~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHA------LE----EDLIEEMKEIKEAVK--PDEVLLVIDATIGQQAKN--QAKAFHEAVGIGGI 237 (437)
T ss_pred hcC--CEEEEECCCccc------ch----HHHHHHHHHHHHHhc--ccceeEEEeccccHHHHH--HHHHHHhcCCCCEE
Confidence 443 799999986651 11 122233222221111 123455555544433332 22334322 3
Q ss_pred cCCCCCHHHHHH-HHHHHHhh----------ccc--CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000858 1115 MVNLPDAPNREK-IIRVILAK----------EEL--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1181 (1251)
Q Consensus 1115 ~l~lPd~eeR~e-IL~~ll~k----------~~l--~~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek 1181 (1251)
.+.-.|...|.- +|...... +.+ ....+.+.++...-| -+|+..|++.|....-.+ +..+...
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~~~~~--~~~~~~~ 313 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEALDEE--EEEKDVE 313 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHhhhHH--HHHHHHH
Confidence 344445444432 33322221 111 123446777776643 368888888776421111 0001011
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000858 1182 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1182 ~l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
... ....+++||...+++++
T Consensus 314 --~~~-------------~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 314 --KMM-------------KGKFTLKDMYKQLEAMN 333 (437)
T ss_pred --HHH-------------cCCcCHHHHHHHHHHHH
Confidence 111 12488999999888765
No 314
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.13 E-value=0.0004 Score=68.28 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V~~ 1017 (1251)
|+|.|+||+||||+|+.||..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7999999999999999999999998877663
No 315
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.0011 Score=70.10 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~ 1017 (1251)
..|+|+||||+||||||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998874
No 316
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.06 E-value=0.0007 Score=79.47 Aligned_cols=75 Identities=29% Similarity=0.446 Sum_probs=64.0
Q ss_pred ecceeEEccCCccceeecCCCC--CccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCce-EEeeCCCEEEEccC
Q 000858 150 TGAVFTVGHNRQCDLYLKDPSI--SKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ-VVLRGGDELVFSPS 226 (1251)
Q Consensus 150 ~~~~~t~G~~~~cd~~~~d~~~--s~~~c~l~~~~~~~~~~a~le~~~~~g~v~vNg~~~~k~~~-~~L~~gdev~f~~~ 226 (1251)
.....+|||+..||-.+.|+.- |.-||+|... +|. ++|=++|+||+ +|||..+.-|.- +.|+.||||-++
T Consensus 24 ~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l-~VNgs~~~~g~~~~RLqqGd~i~iG-- 96 (430)
T COG3456 24 DRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGL-LVNGSDLPLGEGSARLQQGDEILIG-- 96 (430)
T ss_pred hcCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCce-eecccccCCCCCccccccCCEEeec--
Confidence 3567899999999999999875 9999999864 555 78999998888 799999999888 999999999773
Q ss_pred CCeeEEee
Q 000858 227 GKHSYIFQ 234 (1251)
Q Consensus 227 ~~~ayif~ 234 (1251)
-|||.
T Consensus 97 ---~y~i~ 101 (430)
T COG3456 97 ---RYIIR 101 (430)
T ss_pred ---cEEEE
Confidence 37776
No 317
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0038 Score=80.34 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=97.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccc--ccccCchHHHHHHHHHHHHhc-CCceEEEcc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDE 1051 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el----------g~~fi~V~~s~L~--s~~~G~se~~I~~lF~~A~k~-~PsILfIDE 1051 (1251)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+..++.+..++... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 577999999999999999999876 3456667765443 346677888999999988854 456889999
Q ss_pred ccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC-----CCCCcHHHHhcccccccCCCCCHHHHHH
Q 000858 1052 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1251)
Q Consensus 1052 ID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRF~~~I~l~lPd~eeR~e 1126 (1251)
++.+.+...+.+ .-...+-|.-.+ .++.+.+|+||.. ...-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 999987665422 112222222221 1234889988753 2355789999995 67788999888777
Q ss_pred HHHHHHhh
Q 000858 1127 IIRVILAK 1134 (1251)
Q Consensus 1127 IL~~ll~k 1134 (1251)
||..+-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77766555
No 318
>PHA02624 large T antigen; Provisional
Probab=97.01 E-value=0.00067 Score=83.66 Aligned_cols=118 Identities=21% Similarity=0.299 Sum_probs=65.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCC--CC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE--NP 1062 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~--~~ 1062 (1251)
+.+||+||||||||+++.+|++.++...+.++++.-.+. |...=....-+.+||++-.-+-... .+
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999766777886652221 1111111125778888742211000 00
Q ss_pred chHHHHHHHHHhHHhhccCC-c----ccCCcc-----EEEEEecCCCCCCcHHHHhcccccccCCC
Q 000858 1063 GEHEAMRKMKNEFMVNWDGL-R----TKDKER-----VLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1251)
Q Consensus 1063 ~~~e~~~~il~~LL~~ldgl-~----~k~~~~-----VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1118 (1251)
+. .+.. +..+...+||- . .+...+ --.|.|||. ..|+..+.-||..++.|..
T Consensus 500 G~--~~dN-l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQ--GMNN-LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cc--ccch-hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 00 0000 12233344443 1 011111 124456765 5688888889988888853
No 319
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.01 E-value=0.0012 Score=71.22 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=56.6
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccccccc----CchHH-------------HHHHHHHHHHhcCCc
Q 000858 987 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWF----GEGEK-------------YVKAVFSLASKIAPS 1045 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAI-A~el---g~~fi~V~~s~L~s~~~----G~se~-------------~I~~lF~~A~k~~Ps 1045 (1251)
.|++|.||+|||+.|-.. .... |.+++. +...|.-..+ +..-. ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977655 4333 666554 4332211111 10000 001111111111468
Q ss_pred eEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCC
Q 000858 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 1117 (1251)
Q Consensus 1046 ILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~ 1117 (1251)
+|+|||++.+++.+.... ......+ +++...+ +..+-||.+|-.+..++..+++..+..+.+.
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~hR------h~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQHR------HYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGCC------CTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHhC------cCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999998776421 1112333 3333322 3457888899999999999988665555443
No 320
>CHL00181 cbbX CbbX; Provisional
Probab=97.01 E-value=0.0038 Score=71.79 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=77.7
Q ss_pred CeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCcchhhhccccCCC
Q 000858 705 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 778 (1251)
Q Consensus 705 P~Ilf~~die~~l~~------~~~~~~~l~~~L~~L~g~VvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd 778 (1251)
+-||||||++.+... ..+....|...++...++++||++++. +. .+.+++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~------------------~~~~~~----- 178 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-DR------------------MDKFYE----- 178 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH------------------HHHHHh-----
Confidence 349999999984321 245556666667777788999999761 00 001111
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHh---hhhhhhhcccchhHHHHHhhhCCCCcccchh
Q 000858 779 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE---RDVETLKGQSNIISIRSVLSRNGLDCVDLES 855 (1251)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e---~~Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~ 855 (1251)
....|..+|+..|.++++..+.+...|...+. ..+... +...+... .. .
T Consensus 179 --------------~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~-~~~~L~~~---i~----------~ 230 (287)
T CHL00181 179 --------------SNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE-AEKALLDY---IK----------K 230 (287)
T ss_pred --------------cCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh-HHHHHHHH---HH----------H
Confidence 11467889999999999998888776655443 223222 11111111 00 0
Q ss_pred hhcccCCCC-HHHHHHHHhhhhhhHhhhccC
Q 000858 856 LCIKDQTLT-TEGVEKIVGWALSHHFMHCSE 885 (1251)
Q Consensus 856 La~~tkg~s-gadI~~Lv~~A~s~Al~r~~~ 885 (1251)
. .....|+ +-+++.++..|......|...
T Consensus 231 ~-~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 231 R-MEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred h-CCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 0 1134577 789999999988887777654
No 321
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.00 E-value=0.0029 Score=75.26 Aligned_cols=97 Identities=24% Similarity=0.412 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccC--------chHHHHHHHHHHHHhcCCc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPS 1045 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~------~~G--------~se~~I~~lF~~A~k~~Ps 1045 (1251)
+..-+||+|+||+|||+|+..+|... +.++++++..+-... .+| ..+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 44568999999999999999998765 456777765431111 111 0122355667777778899
Q ss_pred eEEEccccccccCCC--CCchHHHHHHHHHhHHhhc
Q 000858 1046 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNW 1079 (1251)
Q Consensus 1046 ILfIDEID~L~~~r~--~~~~~e~~~~il~~LL~~l 1079 (1251)
+|+||+|..++.... .++.....+.++..|....
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999998864332 1233334455555554443
No 322
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.99 E-value=0.0031 Score=76.76 Aligned_cols=96 Identities=26% Similarity=0.433 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------cCc--------hHHHHHHHHHHHHhcCCc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FGE--------GEKYVKAVFSLASKIAPS 1045 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~------~G~--------se~~I~~lF~~A~k~~Ps 1045 (1251)
+..-+||+|+||+|||+|+..++... +.++++++..+-.... +|. .+..+..++.......|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 44568999999999999999998765 6777888764422110 110 122355666777777899
Q ss_pred eEEEccccccccCCCC--CchHHHHHHHHHhHHhh
Q 000858 1046 VVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVN 1078 (1251)
Q Consensus 1046 ILfIDEID~L~~~r~~--~~~~e~~~~il~~LL~~ 1078 (1251)
+|+||+|..++..... ++.....+.++..|...
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 9999999988643221 22333344455544443
No 323
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.98 E-value=0.00044 Score=73.35 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEA---GANF 1012 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~el---g~~f 1012 (1251)
+|+|+|+||+|||||++.++..+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999998887 5553
No 324
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.98 E-value=0.0042 Score=80.51 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=30.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000858 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1251)
Q Consensus 492 s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1251)
.+.+||.||+| ....+|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 35699999999 78999999999999999888774
No 325
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.002 Score=68.33 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~ 1019 (1251)
.|+|+|+||+||||||+.|+..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 5899999999999999999999999988876533
No 326
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.90 E-value=0.0033 Score=76.19 Aligned_cols=171 Identities=24% Similarity=0.316 Sum_probs=102.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------EEEEecccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------FINISMSSI 1020 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~---------fi~V~~s~L 1020 (1251)
.|.|.+.+|++|.-++.--.. ..+..+.-.+-.-+|||.|.|-+.|+.|.+++.+.+-.. =+-+.++--
T Consensus 302 SI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 478999999998665532111 111122112223459999999999999999998765221 122222211
Q ss_pred cccccCchHHHHH-HHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhc--cCCcccCCccEEEEEecC
Q 000858 1021 TSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATN 1097 (1251)
Q Consensus 1021 ~s~~~G~se~~I~-~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~l--dgl~~k~~~~VlVIaTTN 1097 (1251)
..+ ..+|..+. +..-.|.+ +|+.|||+|.+ +.....+.-.++.+-.+.+ .|+...-+.++-|||++|
T Consensus 380 tD~--eTGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred ecc--ccchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111 12233322 13334444 89999999998 4445556666666655554 466666678999999999
Q ss_pred CCC-------------CCcHHHHhcccccccC-CCCCHHHHHHHHHHHH
Q 000858 1098 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVIL 1132 (1251)
Q Consensus 1098 ~p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eIL~~ll 1132 (1251)
+.+ .|++.+++||+..+.+ .--+...-..|-.+.+
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 743 5788999999865433 3344433344444433
No 327
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.83 E-value=0.0026 Score=66.62 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=36.9
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 000858 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 1020 (1251)
Q Consensus 951 I~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~---fi~V~~s~L 1020 (1251)
++|.++..+.|...+.. . ....++.++|+|++|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~----------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A----------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T----------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H----------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 56888888888886631 1 12234679999999999999999987776322 777776554
No 328
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.82 E-value=0.004 Score=68.34 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s 1018 (1251)
+..-++|+|+||+|||+++..+|.+. +..++.+++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33458999999999999999998754 6778888776
No 329
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.81 E-value=0.0012 Score=68.53 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
++..|+|+|+||||||++|+++|..++++++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999888654
No 330
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.80 E-value=0.0049 Score=70.05 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=61.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-cccc
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 1021 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~~-s~L~ 1021 (1251)
.++++++-.....+.|++++.. +...++|.||+|+|||++++++..... ..++.+.- .++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677888777777777776542 223489999999999999999977763 33444431 1111
Q ss_pred cc-----cc-CchHHHHHHHHHHHHhcCCceEEEcccc
Q 000858 1022 SK-----WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1251)
Q Consensus 1022 s~-----~~-G~se~~I~~lF~~A~k~~PsILfIDEID 1053 (1251)
-. .+ .........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 11 1111235666777788999999999994
No 331
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.79 E-value=0.019 Score=75.15 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=82.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--cccc-ccc------------cC---------------chHHHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM--SSIT-SKW------------FG---------------EGEKYVKA 1034 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~--s~L~-s~~------------~G---------------~se~~I~~ 1034 (1251)
+-++|+||+|.|||+++...+...+ ++.-++. .+-. ..+ .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4599999999999999999887766 5544443 2200 000 00 00112333
Q ss_pred HHHHHHh-cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccc
Q 000858 1035 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1113 (1251)
Q Consensus 1035 lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 1113 (1251)
++..... ..|.+|+|||++.+- .......+..++... . .++.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~~---~----~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRHQ---P----ENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHhC---C----CCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333333 568899999999761 112233444444332 1 33444445543222321111111223
Q ss_pred ccCC----CCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 000858 1114 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1114 I~l~----lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySg 1155 (1251)
+.+. ..+.++-.+++...+... .+..++..|...|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHH
Confidence 4444 557788888877654321 245567888899998743
No 332
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.77 E-value=0.0019 Score=79.50 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.6
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000858 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1251)
Q Consensus 947 tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el-g~~fi~V~~ 1017 (1251)
-|+|+.|++++++.|.+++..... ++.....-++|.||||+|||+||+.|++.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 578999999999999988743111 122333569999999999999999999887 456666543
No 333
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.68 E-value=0.0094 Score=69.53 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=51.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------------ccccCchHHHHHHHHHHHHhcC
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------------SKWFGEGEKYVKAVFSLASKIA 1043 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~----------------s~~~G~se~~I~~lF~~A~k~~ 1043 (1251)
+..-++|+||||+|||+||-.++.+. |.+++.+++.... -......++.+..+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33458999999999999988876544 6677777653311 1111233444555555556677
Q ss_pred CceEEEccccccccC
Q 000858 1044 PSVVFVDEVDSMLGR 1058 (1251)
Q Consensus 1044 PsILfIDEID~L~~~ 1058 (1251)
+.+|+||-|..|.+.
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999998753
No 334
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.66 E-value=0.0049 Score=73.85 Aligned_cols=167 Identities=24% Similarity=0.307 Sum_probs=91.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----ccccccccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 1025 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~----~s~L~s~~~ 1025 (1251)
.|.|.+++|+++.-++.---+ ..+-.+--.+-.-+|||.|.|||.|+.|.+-+-+-.-.-++.-- ++.|.....
T Consensus 332 SIfG~~DiKkAiaClLFgGsr--K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSR--KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcc--ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 478999999998665532111 11111111122235999999999999999988665533222210 001111000
Q ss_pred Cch---HHHH-HHHHHHHHhcCCceEEEccccccccCCCCCchHHHHHHHHH--hHHhhccCCcccCCccEEEEEecCCC
Q 000858 1026 GEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN--EFMVNWDGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1026 G~s---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~--~LL~~ldgl~~k~~~~VlVIaTTN~p 1099 (1251)
... +-++ .+..-.| ..+|+.|||+|.+- ..+..+.-..+. +....-.|+.+.-+.+.-|+|++|++
T Consensus 410 RD~~tReFylEGGAMVLA---DgGVvCIDEFDKMr-----e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLA---DGGVVCIDEFDKMR-----EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred ecCCcceEEEecceEEEe---cCCEEEeehhhccC-----chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCc
Confidence 000 0000 0011122 24899999999982 222223223332 33334456666667888999999874
Q ss_pred C-------------CCcHHHHhcccccccCCCCCHHHHHH
Q 000858 1100 F-------------DLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1251)
Q Consensus 1100 ~-------------~Ld~aLlrRF~~~I~l~lPd~eeR~e 1126 (1251)
. ++-+.+++||+.++.+.--..++|-.
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~ 521 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDI 521 (729)
T ss_pred cccccccCCcccccchhhhHhhhccEEEEEeccCcchhhh
Confidence 2 34489999999888886655454433
No 335
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.65 E-value=0.012 Score=65.58 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc----cccc--c-----------------------cC--ch
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----ITSK--W-----------------------FG--EG 1028 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~----L~s~--~-----------------------~G--~s 1028 (1251)
+..-++|.|++|||||+++..++... |...+.+...+ +... . .+ ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34569999999999999986665443 55666665422 0000 0 00 01
Q ss_pred HHHHHHHHHHHHhcCCceEEEccccccc
Q 000858 1029 EKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1251)
Q Consensus 1029 e~~I~~lF~~A~k~~PsILfIDEID~L~ 1056 (1251)
+..+..+...+....|.+++||++-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3345555666666678999999998764
No 336
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.61 E-value=0.022 Score=66.45 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=40.1
Q ss_pred ccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 000858 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1251)
Q Consensus 452 sfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~ 524 (1251)
+|++|-.- ++.+..|..+.-..... ...-+.+||+||+| .....||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEE
Confidence 57776554 66666665444322111 12345799999999 89999999999999876543
No 337
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.59 E-value=0.0042 Score=67.42 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecc-cccc---------cccCchHHHHHHHHHHHHhcCCceEEEcc
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDE 1051 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~----~fi~V~~s-~L~s---------~~~G~se~~I~~lF~~A~k~~PsILfIDE 1051 (1251)
-++|.||+|+|||+++++++..+.. .++.+..+ ++.. ...+.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999887742 23333211 1110 01122222345566667777899999999
Q ss_pred c
Q 000858 1052 V 1052 (1251)
Q Consensus 1052 I 1052 (1251)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 338
>PRK13695 putative NTPase; Provisional
Probab=96.55 E-value=0.011 Score=62.55 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000858 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987765
No 339
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.54 E-value=0.021 Score=66.54 Aligned_cols=100 Identities=17% Similarity=0.306 Sum_probs=55.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecccccc-------cccCchHHHHHHHHHHHHhcCCceEEEcccc
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITS-------KWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~elg~~f-i~V~~s~L~s-------~~~G~se~~I~~lF~~A~k~~PsILfIDEID 1053 (1251)
.+++|+.|||+-|.|||+|.-..-+.+-.+- ..+.--.++- ...|.. ..+..+-.... ..-.||+|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeeee
Confidence 4679999999999999999999887773321 1111101100 011211 01111111111 112599999997
Q ss_pred ccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCC
Q 000858 1054 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1251)
Q Consensus 1054 ~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1098 (1251)
.= +.++...+.+++..|+. ..|.+++|+|.
T Consensus 141 Vt-----DI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~ 170 (367)
T COG1485 141 VT-----DIADAMILGRLLEALFA----------RGVVLVATSNT 170 (367)
T ss_pred ec-----ChHHHHHHHHHHHHHHH----------CCcEEEEeCCC
Confidence 42 33334445555555542 46889999986
No 340
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.54 E-value=0.0097 Score=69.48 Aligned_cols=74 Identities=27% Similarity=0.354 Sum_probs=50.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc----------------ccccccCchHHHHHHHHHHHHhcCCc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPS 1045 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~----------------L~s~~~G~se~~I~~lF~~A~k~~Ps 1045 (1251)
+-++|+||||+|||+||-.++.+. |...+.++... +.-......++.+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 448999999999999999886544 66777776533 11111122344444444455666789
Q ss_pred eEEEccccccccC
Q 000858 1046 VVFVDEVDSMLGR 1058 (1251)
Q Consensus 1046 ILfIDEID~L~~~ 1058 (1251)
+|+||-|-.|++.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998753
No 341
>PRK04296 thymidine kinase; Provisional
Probab=96.52 E-value=0.017 Score=62.31 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=41.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc----c----ccccccCch-H----HHHHHHHHHHH--hcCCceE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS----S----ITSKWFGEG-E----KYVKAVFSLAS--KIAPSVV 1047 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s----~----L~s~~~G~s-e----~~I~~lF~~A~--k~~PsIL 1047 (1251)
-+|++||+|+|||+++..++..+ +..++.+... . +.. ..|.. . .....++..+. .....+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37999999999999998887765 5555555321 1 111 11110 0 11233333332 2356899
Q ss_pred EEcccccc
Q 000858 1048 FVDEVDSM 1055 (1251)
Q Consensus 1048 fIDEID~L 1055 (1251)
+|||++.|
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 342
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.50 E-value=0.0047 Score=62.28 Aligned_cols=31 Identities=52% Similarity=0.816 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~ 1019 (1251)
|++.||||+|||++|+.++..++..+ ++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHH
Confidence 79999999999999999999999444 44433
No 343
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.45 E-value=0.0077 Score=65.34 Aligned_cols=33 Identities=42% Similarity=0.606 Sum_probs=24.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
+-++|.||||||||++++.++..+ +..++.+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 358899999999999999987655 666666654
No 344
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.43 E-value=0.021 Score=65.57 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=51.1
Q ss_pred CeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCcchhhhccccCCC
Q 000858 705 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 778 (1251)
Q Consensus 705 P~Ilf~~die~~l~~------~~~~~~~l~~~L~~L~g~VvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~l~d~~~Pd 778 (1251)
+-||||||++.+... ..+..+.|-..|+.-.+.++||++++.. . ++.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-~----------------------~~~---- 174 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-R----------------------MDS---- 174 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-H----------------------HHH----
Confidence 359999999984221 2334445556666667799999987710 0 010
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHH
Q 000858 779 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1251)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~ 823 (1251)
.......|..+|+..|.++++.++.+...|...+
T Consensus 175 -----------~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 175 -----------FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred -----------HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 1112256778888889999888888766555433
No 345
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.42 E-value=0.0067 Score=72.08 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEeccc---------------ccccccCchHHHHH---HHHHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGA-----N-FINISMSS---------------ITSKWFGEGEKYVK---AVFSLAS 1040 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~-----~-fi~V~~s~---------------L~s~~~G~se~~I~---~lF~~A~ 1040 (1251)
...||+||+|+|||+|++.|++.... . ++.+.... +.+.+-...+..++ .++..|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45999999999999999999987732 2 22222111 12222222333333 3444554
Q ss_pred hc----CCceEEEccccccc
Q 000858 1041 KI----APSVVFVDEVDSML 1056 (1251)
Q Consensus 1041 k~----~PsILfIDEID~L~ 1056 (1251)
.. ...+||||||++|.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 32 45799999999985
No 346
>PRK13947 shikimate kinase; Provisional
Probab=96.42 E-value=0.0028 Score=66.27 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
+|+|.|+||+|||++++.+|+.++++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997765
No 347
>PRK03839 putative kinase; Provisional
Probab=96.42 E-value=0.0026 Score=67.41 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
.|+|.|+||+||||+++.+|+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999997765
No 348
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.41 E-value=0.018 Score=69.16 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=68.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCchH
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~ 1065 (1251)
-++|+||.++|||++++.+.....-.++.++..++......- ......+..++......||||||+.+ ++-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~W- 109 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PDW- 109 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hhH-
Confidence 799999999999999988888875556666655544332211 12222333333334579999999876 111
Q ss_pred HHHHHHHHhHHhhccCCcccCCccEEEEEecCCC--CCCcHHHHhcccccccCCCCCHHHHHH
Q 000858 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1251)
Q Consensus 1066 e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p--~~Ld~aLlrRF~~~I~l~lPd~eeR~e 1126 (1251)
.+.+..+ .+... .++++.+++... ..+.+.+..|. ..+.+.+.+..+...
T Consensus 110 ---~~~lk~l---~d~~~----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 110 ---ERALKYL---YDRGN----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---HHHHHHH---Hcccc----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 1222222 22211 134444443221 23334555574 567777778777754
No 349
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.41 E-value=0.013 Score=77.47 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=84.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------cccccCchH---HHHHHHHHHHHhcCCceEEEccccccc
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGEGE---KYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L------~s~~~G~se---~~I~~lF~~A~k~~PsILfIDEID~L~ 1056 (1251)
.+||.||..+|||.++..+|.+.|..|++++-.+- .+.|+.... ..-.++.-.|.+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 49999999999999999999999999999986432 222221111 11223444444422 45889999643
Q ss_pred cCCCCCchHHHHHHHHHhHHhhccCCc-------ccCCccEEEEEecCCCC------CCcHHHHhcccccccCCCCCHHH
Q 000858 1057 GRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPN 1123 (1251)
Q Consensus 1057 ~~r~~~~~~e~~~~il~~LL~~ldgl~-------~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~l~lPd~ee 1123 (1251)
.... ..+++.++..-+.+. -.+..++++.||-|+|. -|..+++.|| ..++|.--..++
T Consensus 968 ----pTDV----LEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 ----PTDV----LEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred ----cHHH----HHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 1111 223333332222111 12346788899989874 5778999999 567776666677
Q ss_pred HHHHHHHH
Q 000858 1124 REKIIRVI 1131 (1251)
Q Consensus 1124 R~eIL~~l 1131 (1251)
...|++..
T Consensus 1039 le~ILh~r 1046 (4600)
T COG5271 1039 LEEILHGR 1046 (4600)
T ss_pred HHHHHhcc
Confidence 77776643
No 350
>PRK14974 cell division protein FtsY; Provisional
Probab=96.38 E-value=0.025 Score=66.49 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=26.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
+.-++|.|++|+|||+++..+|..+ +..+..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4679999999999999999888766 555555554
No 351
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.33 E-value=0.012 Score=70.44 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=36.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
.++++.||+|||||+|+.+|+... | -.++.+.|+... .. ..+.. -....+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHhh--hccCCEEEEEcCCCC
Confidence 589999999999999999997762 4 122223332211 10 11111 123479999999876
No 352
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.30 E-value=0.0037 Score=63.90 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
.|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3899999999999999999999999988665
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.011 Score=70.19 Aligned_cols=108 Identities=23% Similarity=0.330 Sum_probs=57.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccccc----------ccccCc------hHHHHHHHHHHHHhcC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSIT----------SKWFGE------GEKYVKAVFSLASKIA 1043 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el----g-~~fi~V~~s~L~----------s~~~G~------se~~I~~lF~~A~k~~ 1043 (1251)
..++|.||+|+|||+++..||..+ | ..+..+.+..+. ....|- ....+...+ .+...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHhcC
Confidence 469999999999999999998764 3 234334432221 000110 011112222 22234
Q ss_pred CceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHH
Q 000858 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV 1106 (1251)
Q Consensus 1044 PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aL 1106 (1251)
..+|+||..... +. ..... +.+..+..... .-..++||.+|+..+.+...+
T Consensus 216 ~DlVLIDTaG~~------~~-d~~l~----e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 216 KHMVLIDTIGMS------QR-DRTVS----DQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCEEEEcCCCCC------cc-cHHHH----HHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 589999999643 11 11122 22222322211 225688888888877776543
No 354
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.28 E-value=0.0063 Score=68.76 Aligned_cols=97 Identities=21% Similarity=0.369 Sum_probs=59.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 1020 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~~-s~L 1020 (1251)
..++++++-.....+.+.+++...+ +....+|+.|++|+|||+++++++.... ..++.+.- .++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3466777666665666666554311 1235799999999999999999998873 34444442 121
Q ss_pred ccc------cc-CchHHHHHHHHHHHHhcCCceEEEcccc
Q 000858 1021 TSK------WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1251)
Q Consensus 1021 ~s~------~~-G~se~~I~~lF~~A~k~~PsILfIDEID 1053 (1251)
.-. .. .........++..+.+..|.+|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 100 00 1123346677788888999999999995
No 355
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.27 E-value=0.016 Score=63.20 Aligned_cols=35 Identities=37% Similarity=0.580 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s 1018 (1251)
..-++|+|+||+|||+++..+|.+. +.+++.++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3458999999999999999998765 5677777653
No 356
>PRK00625 shikimate kinase; Provisional
Probab=96.25 E-value=0.004 Score=66.46 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
.|+|+|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 357
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.25 E-value=0.2 Score=57.82 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~elg 1009 (1251)
.++..|-|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3557799999999999999999988773
No 358
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.24 E-value=0.022 Score=62.12 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=41.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEeccc-cccc--ccCchHHHHHHHHHHHHhcC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 1043 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e-----lg~~fi-------------~V~~s~-L~s~--~~G~se~~I~~lF~~A~k~~ 1043 (1251)
.-++|+||+|+|||+|.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 46899999999999999999743 344321 111111 1000 01111134556666665457
Q ss_pred CceEEEcccc
Q 000858 1044 PSVVFVDEVD 1053 (1251)
Q Consensus 1044 PsILfIDEID 1053 (1251)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999974
No 359
>PRK13948 shikimate kinase; Provisional
Probab=96.24 E-value=0.0046 Score=66.58 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 981 ~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
..++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456688999999999999999999999999998666
No 360
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.24 E-value=0.016 Score=58.75 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
.|.|+.-+.+.+..++...+..+ . .+.|--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47888888888877776543321 1 1122446799999999999999999986
No 361
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.22 E-value=0.02 Score=61.02 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=46.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc-----------------cCchHHHHHHHHHHHHhcCCceEEE
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVVFV 1049 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~-----------------~G~se~~I~~lF~~A~k~~PsILfI 1049 (1251)
+||+|++|+|||++|..++...+.+++++....-.+.- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877788777654322110 001112233333221 14679999
Q ss_pred ccccccccCC
Q 000858 1050 DEVDSMLGRR 1059 (1251)
Q Consensus 1050 DEID~L~~~r 1059 (1251)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 362
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.20 E-value=0.025 Score=60.28 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=46.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHH--------------------HHHHHHHHHHhcCCc
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 1045 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~--------------------~I~~lF~~A~k~~Ps 1045 (1251)
.+||.|+||+|||++|..++..++.+++.+........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998877777665432211 1111 233333221 23457
Q ss_pred eEEEccccccccC
Q 000858 1046 VVFVDEVDSMLGR 1058 (1251)
Q Consensus 1046 ILfIDEID~L~~~ 1058 (1251)
+|+||-+..|...
T Consensus 79 ~VlID~Lt~~~~n 91 (170)
T PRK05800 79 CVLVDCLTTWVTN 91 (170)
T ss_pred EEEehhHHHHHHH
Confidence 8999999988643
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=96.20 E-value=0.13 Score=62.52 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc---------------cc-----CchHHHHHHHHHH
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 1038 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~s~L~s~---------------~~-----G~se~~I~~lF~~ 1038 (1251)
++.-|++.|++|+|||+++..+|..+ |..+..+++...... ++ .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999888887654 566666665321110 01 1123334455566
Q ss_pred HHhcCCceEEEcccccc
Q 000858 1039 ASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 1039 A~k~~PsILfIDEID~L 1055 (1251)
++.....+|+||=..++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666789999988655
No 364
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.20 E-value=0.021 Score=69.78 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=51.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccCc--------hHHHHHHHHHHHHhcCC
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAP 1044 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~------~~G~--------se~~I~~lF~~A~k~~P 1044 (1251)
.+..-+||.|+||+|||+|+..++... +.++++++..+-... .+|. .+..+..+...+.+..|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 344558999999999999999987665 456777776432111 0111 11234556666677789
Q ss_pred ceEEEcccccccc
Q 000858 1045 SVVFVDEVDSMLG 1057 (1251)
Q Consensus 1045 sILfIDEID~L~~ 1057 (1251)
.+|+||.|..++.
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998864
No 365
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.19 E-value=0.036 Score=62.64 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~ 1010 (1251)
..++|+||+|+|||+|++.|++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 56999999999999999999988743
No 366
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.18 E-value=0.04 Score=61.42 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=28.1
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 978 ~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
++ ..+...+||+||||+|||+|+..++.+. |-+.+.++.
T Consensus 16 GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 44 3345679999999999999998776542 556655553
No 367
>PRK14532 adenylate kinase; Provisional
Probab=96.17 E-value=0.0044 Score=66.05 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
.|+|.||||+|||++|+.||+.+|++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999776544
No 368
>PRK06217 hypothetical protein; Validated
Probab=96.15 E-value=0.0048 Score=65.85 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
.|+|.|++|+|||++|++|+..++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999987765
No 369
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.15 E-value=0.019 Score=70.68 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=60.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 1020 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~~s-~L 1020 (1251)
..++++++-.++..+.+++++.. +..-+|++||+|+|||++..++..++. .+++.+.-+ ++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45778888888888888776642 222379999999999999998877763 345554321 11
Q ss_pred c-----ccccC-chHHHHHHHHHHHHhcCCceEEEcccc
Q 000858 1021 T-----SKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1251)
Q Consensus 1021 ~-----s~~~G-~se~~I~~lF~~A~k~~PsILfIDEID 1053 (1251)
. ...+. ............+.++.|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 00011 111234455566678899999999994
No 370
>PHA02774 E1; Provisional
Probab=96.15 E-value=0.036 Score=68.70 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 1017 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~-V~~ 1017 (1251)
+.++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 579999999999999999999999655444 553
No 371
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.15 E-value=0.21 Score=58.20 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=68.2
Q ss_pred HHHHHHHHHhc---CCceEEEccccccccCCCC-----CchHHHHHHHHHhHHhhccCCcccCCccEE-EEEecCC---C
Q 000858 1032 VKAVFSLASKI---APSVVFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---P 1099 (1251)
Q Consensus 1032 I~~lF~~A~k~---~PsILfIDEID~L~~~r~~-----~~~~e~~~~il~~LL~~ldgl~~k~~~~Vl-VIaTTN~---p 1099 (1251)
+..++.+.... .|.++-||++..|+....- ..-+.....+...|+..+.+-..-.++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 44455555432 3567779999999965210 112233345556666554433322233332 2555522 2
Q ss_pred C--CCcHHHHhccc---------------------ccccCCCCCHHHHHHHHHHHHhhcccCC----hhcHHHHHHHcCC
Q 000858 1100 F--DLDEAVVRRLP---------------------RRLMVNLPDAPNREKIIRVILAKEELAS----DVDLEGIANMADG 1152 (1251)
Q Consensus 1100 ~--~Ld~aLlrRF~---------------------~~I~l~lPd~eeR~eIL~~ll~k~~l~~----dvdl~~LA~~T~G 1152 (1251)
. .++.++..+-. ..|.++..+.+|-..+++.+....-+.. ....+.+...+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~- 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN- 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-
Confidence 2 45555554321 1577888889999999999887744332 223344444444
Q ss_pred CcHHHHH
Q 000858 1153 YSGSDLK 1159 (1251)
Q Consensus 1153 ySgaDL~ 1159 (1251)
.++++|.
T Consensus 301 GNp~el~ 307 (309)
T PF10236_consen 301 GNPRELE 307 (309)
T ss_pred CCHHHhc
Confidence 4566654
No 372
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.14 E-value=0.0045 Score=65.49 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
|+|+||||+|||++|+.||..+++.++ ++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i--s~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL--SAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECChHH
Confidence 789999999999999999999986554 444443
No 373
>PRK13949 shikimate kinase; Provisional
Probab=96.13 E-value=0.0046 Score=65.59 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
+.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999998876
No 374
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.13 E-value=0.058 Score=60.99 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.4
Q ss_pred cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 000858 483 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1251)
Q Consensus 483 k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f 518 (1251)
+.+....+..+.|||.|||| ....+|||++|+++
T Consensus 33 ~~g~~~~~~~~~vll~GppG--tGKTtlA~~ia~~l 66 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPG--TGKTTVARILGKLF 66 (261)
T ss_pred HcCCCCCCCcceEEEEcCCC--CCHHHHHHHHHHHH
Confidence 34455566678899999999 79999999999987
No 375
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.12 E-value=0.016 Score=68.91 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccc-----------ccccCchHHHHHHHHHHHHhcCCceEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 1048 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg-----~~fi~V~~s-~L~-----------s~~~G~se~~I~~lF~~A~k~~PsILf 1048 (1251)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ...+|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999987762 345554322 111 011122222345566777888999999
Q ss_pred Ecccc
Q 000858 1049 VDEVD 1053 (1251)
Q Consensus 1049 IDEID 1053 (1251)
|.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99994
No 376
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.12 E-value=0.012 Score=67.12 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-ccccccc-------ccCc------hHHHHHHHHHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 1040 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~----------~fi~V~-~s~L~s~-------~~G~------se~~I~~lF~~A~ 1040 (1251)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++... .++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987732 222221 1111111 0110 1112345677777
Q ss_pred hcCCceEEEcccc
Q 000858 1041 KIAPSVVFVDEVD 1053 (1251)
Q Consensus 1041 k~~PsILfIDEID 1053 (1251)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999973
No 377
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.025 Score=62.50 Aligned_cols=71 Identities=27% Similarity=0.376 Sum_probs=47.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEec-ccccccccCc-------------hHHHHHHHHHHHHhc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISM-SSITSKWFGE-------------GEKYVKAVFSLASKI 1042 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el--g------~~fi~V~~-s~L~s~~~G~-------------se~~I~~lF~~A~k~ 1042 (1251)
.+.||.||||+|||+|.+-||.-+ | ..+..++- +++.+...|. ..-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999876 2 23444443 2332222221 112234466677889
Q ss_pred CCceEEEcccccc
Q 000858 1043 APSVVFVDEVDSM 1055 (1251)
Q Consensus 1043 ~PsILfIDEID~L 1055 (1251)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999754
No 378
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0045 Score=64.15 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
.+||++|-||||||+|+..||..++++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999998775
No 379
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.08 E-value=0.049 Score=60.27 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~ 1017 (1251)
.+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344568999999999999999886554 777777764
No 380
>PRK13764 ATPase; Provisional
Probab=96.07 E-value=0.016 Score=72.60 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=41.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe------cccccccccCchHHHHHHHHHHHHhcCCceEEEcccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS------MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~------~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID 1053 (1251)
.+||++||+|+||||++++++..+. ..+..+. .......+.. ...........+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 3332332 1111111110 00112223333456789999999994
No 381
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.07 E-value=0.063 Score=60.36 Aligned_cols=132 Identities=16% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccc--------c-C-----chHHHHHH----HHHHHH--
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKYVKA----VFSLAS-- 1040 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg--~~fi~V~~s~L~s~~--------~-G-----~se~~I~~----lF~~A~-- 1040 (1251)
.+-.+++.|++|||||+|+..|...+. +..+.+-++.....+ + . +.+..+.. +-..+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 345799999999999999999987773 233333332211111 0 0 00111111 111111
Q ss_pred -h---cCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccC
Q 000858 1041 -K---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 1116 (1251)
Q Consensus 1041 -k---~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l 1116 (1251)
. ..+.+|+||++..- ..-.+.+..+... | ..-++.+|..+-....|++.++.-.+.++.+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~ 155 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIF 155 (241)
T ss_pred cccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEEEe
Confidence 1 22579999997421 0112233444432 1 2356888888888899999987766666655
Q ss_pred CCCCHHHHHHHHHHH
Q 000858 1117 NLPDAPNREKIIRVI 1131 (1251)
Q Consensus 1117 ~lPd~eeR~eIL~~l 1131 (1251)
. -+..+...|++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 4 3555555555544
No 382
>PRK10536 hypothetical protein; Provisional
Probab=96.07 E-value=0.051 Score=61.61 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 000858 986 GILLFGPPGTGKTMLAKAVATE 1007 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~e 1007 (1251)
-++++||+|||||+||.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 383
>PRK14531 adenylate kinase; Provisional
Probab=96.04 E-value=0.0062 Score=65.08 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
..|+|+||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999887654
No 384
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.03 E-value=0.073 Score=58.53 Aligned_cols=73 Identities=22% Similarity=0.391 Sum_probs=48.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccc----c-------------------------ccc----c
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI----T-------------------------SKW----F 1025 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~s~L----~-------------------------s~~----~ 1025 (1251)
+..-+||.||||+|||.|+..++.+. |-+++.++..+- . ... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 44569999999999999999876433 777777765220 0 000 1
Q ss_pred CchHHHHHHHHHHHHhcCCceEEEcccccc
Q 000858 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 1026 G~se~~I~~lF~~A~k~~PsILfIDEID~L 1055 (1251)
...+..+..+...+....+.+++||.+..+
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 123445566666667778899999999998
No 385
>PRK06762 hypothetical protein; Provisional
Probab=96.02 E-value=0.014 Score=60.81 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
.-|+|+|+||+|||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4589999999999999999999996666666654443
No 386
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.00 E-value=0.05 Score=60.28 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=47.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--------------cc-------------------cC
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KW-------------------FG 1026 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s--------------~~-------------------~G 1026 (1251)
+..-++|+|+||+|||+|+..++.+. |.+++.++..+-.. .+ ..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 34569999999999999999997653 66666666422100 00 00
Q ss_pred chHHHHHHHHHHHHhcCCceEEEccccccc
Q 000858 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1251)
Q Consensus 1027 ~se~~I~~lF~~A~k~~PsILfIDEID~L~ 1056 (1251)
..+..+..+........|.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 112333444444555688999999998663
No 387
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.99 E-value=0.013 Score=69.07 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-ccc---------ccccCchHHHHHHHHHHHHhcCCceEEEc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg----~~fi~V~~s-~L~---------s~~~G~se~~I~~lF~~A~k~~PsILfID 1050 (1251)
..+||.||+|+|||+++++++..+. ..++.+.-+ ++. ....|.........+..+.+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999988764 233333211 111 11122222234556677778899999999
Q ss_pred ccc
Q 000858 1051 EVD 1053 (1251)
Q Consensus 1051 EID 1053 (1251)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 993
No 388
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.066 Score=64.20 Aligned_cols=129 Identities=20% Similarity=0.206 Sum_probs=67.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEecccc------------ccc--ccCchHHHHHHHHHHHH
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINISMSSI------------TSK--WFGEGEKYVKAVFSLAS 1040 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el-------g~~--fi~V~~s~L------------~s~--~~G~se~~I~~lF~~A~ 1040 (1251)
+..++|+||+|+|||+++..+|..+ +.. ++.+++... .+- ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3579999999999999999998765 233 344443111 000 1111122233333332
Q ss_pred hcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhccc----ccccC
Q 000858 1041 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 1116 (1251)
Q Consensus 1041 k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~----~~I~l 1116 (1251)
..-.+|+||.+.++. ..... +.++...++.... +...++|+.+|.....+.. ++.+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHhcCCCCCEEEE
Confidence 335799999998762 11111 2222222222221 2256788888877776764 334442 23445
Q ss_pred CCCCHHHHHH
Q 000858 1117 NLPDAPNREK 1126 (1251)
Q Consensus 1117 ~lPd~eeR~e 1126 (1251)
.-.|...+.-
T Consensus 320 TKlDet~~~G 329 (388)
T PRK12723 320 TKLDETTCVG 329 (388)
T ss_pred EeccCCCcch
Confidence 5555554433
No 389
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.98 E-value=0.029 Score=66.23 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000858 981 TKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 981 ~~P~~gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
..||+||.|||.-|||||+|.-..-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999998876444
No 390
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.98 E-value=0.0061 Score=61.59 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
|+|.|+||+|||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 391
>PRK10436 hypothetical protein; Provisional
Probab=95.98 E-value=0.025 Score=69.24 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=61.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cc
Q 000858 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 1020 (1251)
Q Consensus 945 ~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~~s-~L 1020 (1251)
..++++++-.+...+.+++++.. +..-||++||+|+|||++..++..+++ .+++.+.-+ ++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34778888888888888776642 323489999999999999888777763 344444321 11
Q ss_pred c-----ccccC-chHHHHHHHHHHHHhcCCceEEEcccc
Q 000858 1021 T-----SKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1251)
Q Consensus 1021 ~-----s~~~G-~se~~I~~lF~~A~k~~PsILfIDEID 1053 (1251)
. ...++ .........+..+-++.|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1 00111 111235556677778899999999994
No 392
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.97 E-value=0.059 Score=63.43 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000858 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1251)
Q Consensus 950 dI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~ 1019 (1251)
.+.+.+.++..|..++-. .. ..-|..|+|+|-.|||||++.+.+.+.++.+.+.++|-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 355667777777776531 11 123456899999999999999999999999998888744
No 393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.96 E-value=0.043 Score=60.06 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 1019 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g------~~fi~V~~s~ 1019 (1251)
+..-+.|+||||+|||+|+..+|... + ..++.++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33458999999999999999997654 3 5667776643
No 394
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.96 E-value=0.006 Score=64.90 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776554
No 395
>PRK08233 hypothetical protein; Provisional
Probab=95.96 E-value=0.037 Score=58.18 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG-ANFINISM 1017 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg-~~fi~V~~ 1017 (1251)
.-|.|.|+||+||||+|+.|+..++ ..++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999985 44554443
No 396
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.96 E-value=0.022 Score=65.88 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=46.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecc-ccc-------ccccCchHHHHHHHHHHHHhcCCceEEEcc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 1051 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~s-~L~-------s~~~G~se~~I~~lF~~A~k~~PsILfIDE 1051 (1251)
.++||.|++|+|||+++++++..+ +..++.+.-. ++. .-..+........++..+.+..|.+|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 579999999999999999999876 2333333211 111 001111112567788888899999999999
Q ss_pred cc
Q 000858 1052 VD 1053 (1251)
Q Consensus 1052 ID 1053 (1251)
|-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 93
No 397
>PRK09354 recA recombinase A; Provisional
Probab=95.92 E-value=0.043 Score=64.76 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=48.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc----------------ccccccCchHHHHHHHHHHHHhcCCc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPS 1045 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~----------------L~s~~~G~se~~I~~lF~~A~k~~Ps 1045 (1251)
+-++|+||+|||||+|+-.++.+. |...+.++... +.-......++.+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 458999999999999999876443 66777777543 11111122344444444445566789
Q ss_pred eEEEcccccccc
Q 000858 1046 VVFVDEVDSMLG 1057 (1251)
Q Consensus 1046 ILfIDEID~L~~ 1057 (1251)
+|+||-|-.|++
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 398
>PRK05973 replicative DNA helicase; Provisional
Probab=95.91 E-value=0.073 Score=59.74 Aligned_cols=36 Identities=39% Similarity=0.543 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
.+..-+||.|+||+|||+++-.++.+. |.+++.++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 454569999999999999999887654 666666654
No 399
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.90 E-value=0.0068 Score=62.10 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
++|+|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988776543
No 400
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.90 E-value=0.047 Score=59.48 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=56.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcE--EEEecccc------------ccc-----ccC-chHHHHHHHHHHHH
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANF--INISMSSI------------TSK-----WFG-EGEKYVKAVFSLAS 1040 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~f--i~V~~s~L------------~s~-----~~G-~se~~I~~lF~~A~ 1040 (1251)
|+-++|.||+|+|||+.+..+|.++ +..+ +.++...+ ++- ... .....+.+.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999888888776 3433 44433110 110 001 12233444555555
Q ss_pred hcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCc
Q 000858 1041 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1251)
Q Consensus 1041 k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1251)
...-.+||||-..+. +...+.+.++ ..++..+. +...++|+.++...+.++
T Consensus 81 ~~~~D~vlIDT~Gr~------~~d~~~~~el-~~~~~~~~-----~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS------PRDEELLEEL-KKLLEALN-----PDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS------STHHHHHHHH-HHHHHHHS-----SSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc------hhhHHHHHHH-HHHhhhcC-----CccceEEEecccChHHHH
Confidence 544579999987543 2222222222 23333331 224566666666666655
No 401
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.89 E-value=0.028 Score=61.94 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---------g~~fi~V~~s~ 1019 (1251)
+..-+.|+||||+|||+|+..++... +..++.++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 33458999999999999999997543 25667777543
No 402
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.89 E-value=0.02 Score=69.57 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=64.0
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCce-EEEEcCCCChHHHHHHHHHHHhCCcEE---EE
Q 000858 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAGANFI---NI 1015 (1251)
Q Consensus 940 p~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~g-VLL~GPPGTGKT~LAkAIA~elg~~fi---~V 1015 (1251)
+......+|++++......+.+.+.+.. | .| +|++||.|+|||+...++..+++.+.. .+
T Consensus 229 ~~~~~~l~l~~Lg~~~~~~~~~~~~~~~---------------p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 229 DKDQVILDLEKLGMSPFQLARLLRLLNR---------------P-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred ccccccCCHHHhCCCHHHHHHHHHHHhC---------------C-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 3333456788999999888888887642 3 45 899999999999999999998865443 32
Q ss_pred ecc-cccccccCc------hHHHHHHHHHHHHhcCCceEEEcccc
Q 000858 1016 SMS-SITSKWFGE------GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1251)
Q Consensus 1016 ~~s-~L~s~~~G~------se~~I~~lF~~A~k~~PsILfIDEID 1053 (1251)
.-+ ++.-.-+.. ..-.....+...-++.|.||+|.||-
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 211 110000000 00123344555567899999999995
No 403
>PRK14530 adenylate kinase; Provisional
Probab=95.88 E-value=0.0076 Score=65.97 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
.|+|.||||+|||++++.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999887754
No 404
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.85 E-value=0.015 Score=56.53 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000858 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
+++|+||+|+|||+++..++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888876665
No 405
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0083 Score=64.40 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi 1013 (1251)
.|+|.||||+||||+|+.|++.++++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999555443
No 406
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.80 E-value=0.05 Score=71.82 Aligned_cols=138 Identities=18% Similarity=0.250 Sum_probs=80.5
Q ss_pred CceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhc--------------CCceEE
Q 000858 984 CKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVVF 1048 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~L-AkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~--------------~PsILf 1048 (1251)
.++++++||||+|||+| ..++-.++-..++.+|-+.-.. ++..+..+-...... +-.|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLF 1568 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLF 1568 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEEE
Confidence 47899999999999995 5677778877777777543111 111222221111111 114999
Q ss_pred EccccccccCCCCCchHH---HHHHHHHhHHhhccCCccc------CCccEEEEEecCCCCCC-----cHHHHhcccccc
Q 000858 1049 VDEVDSMLGRRENPGEHE---AMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRPFDL-----DEAVVRRLPRRL 1114 (1251)
Q Consensus 1049 IDEID~L~~~r~~~~~~e---~~~~il~~LL~~ldgl~~k------~~~~VlVIaTTN~p~~L-----d~aLlrRF~~~I 1114 (1251)
.|||+ | +....-..+. .++.++.. .|+... .-.++++.+++|++.+. .+.++||- ..+
T Consensus 1569 cDeIn-L-p~~~~y~~~~vI~FlR~l~e~-----QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1569 CDEIN-L-PYGFEYYPPTVIVFLRPLVER-----QGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eeccC-C-ccccccCCCceEEeeHHHHHh-----cccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 99998 3 3222111111 22222221 112111 01578999999987543 35555542 457
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 000858 1115 MVNLPDAPNREKIIRVILAK 1134 (1251)
Q Consensus 1115 ~l~lPd~eeR~eIL~~ll~k 1134 (1251)
.+..|.......|.+.++.+
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 78899988888888887766
No 407
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.78 E-value=0.065 Score=60.42 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~ 1017 (1251)
+..-++|.|+||+|||+++..++..+ |.+++.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44568999999999999999887654 666666664
No 408
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.18 Score=60.07 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=63.7
Q ss_pred CceEEEcccccccc----CCCCCch-HHHHHHHHHhHHhhccCCcccCCccEEEEEec--CCC--------------CCC
Q 000858 1044 PSVVFVDEVDSMLG----RRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT--NRP--------------FDL 1102 (1251)
Q Consensus 1044 PsILfIDEID~L~~----~r~~~~~-~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTT--N~p--------------~~L 1102 (1251)
|-++.||++..|+. .+..... ......+...++..+.+-.. ...+++++. ..+ ..+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt---~g~vi~a~s~~~~~~a~~h~gv~~y~pr~ll 392 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWT---FGSVIMAISGVTTPSAFGHLGVAPYVPRKLL 392 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccc---cceEEEEecccccchhccccccccCCchHhc
Confidence 45778999999997 3322111 11122344444444443322 223333333 111 233
Q ss_pred cHHHHh---cccccccCCCCCHHHHHHHHHHHHhhccc----CChhcHHHHHHHcCCCcHHHHHHHHH
Q 000858 1103 DEAVVR---RLPRRLMVNLPDAPNREKIIRVILAKEEL----ASDVDLEGIANMADGYSGSDLKNLCV 1163 (1251)
Q Consensus 1103 d~aLlr---RF~~~I~l~lPd~eeR~eIL~~ll~k~~l----~~dvdl~~LA~~T~GySgaDL~~L~~ 1163 (1251)
++..+. -| ..|+++..+.+|-..++.+++...-+ ..+..++++--+. +.+++.++.+|.
T Consensus 393 g~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 393 GEEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred CccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 333333 34 34788888999999999999877432 2344566666666 557777777764
No 409
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.75 E-value=0.0089 Score=66.63 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
..|+|.||||+|||++|+.||+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999999998777654
No 410
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.69 E-value=0.008 Score=62.55 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~ 1014 (1251)
|+|.||+|+|||++|+.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876654
No 411
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.69 E-value=0.0084 Score=63.89 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
+.|+|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998776
No 412
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.68 E-value=0.036 Score=58.83 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
+...++|+||+||||++|.+++|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44569999999999999999999754
No 413
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.68 E-value=0.034 Score=69.80 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=61.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-c--
Q 000858 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-S-- 1019 (1251)
Q Consensus 946 ~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg---~~fi~V~~s-~-- 1019 (1251)
.++++++-.....+.+.+++.. +..-||++||+|+|||++..++...++ .+++.+.-+ +
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 5678888888888888776642 223489999999999999988887774 334443221 1
Q ss_pred ---ccccccC-chHHHHHHHHHHHHhcCCceEEEcccc
Q 000858 1020 ---ITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1251)
Q Consensus 1020 ---L~s~~~G-~se~~I~~lF~~A~k~~PsILfIDEID 1053 (1251)
+....+. .........+..+.++.|.||+|.||-
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 1110111 111234556677788899999999994
No 414
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.68 E-value=0.029 Score=65.90 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-cccccc-----------cc--cCchHHHHHHHHHHHHhcCCceEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 1048 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg--~~fi~V~-~s~L~s-----------~~--~G~se~~I~~lF~~A~k~~PsILf 1048 (1251)
.+||+.|++|+|||+++++++.... ..++.+. ..++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5799999999999999999998874 2333331 111110 00 111223456788888999999999
Q ss_pred Ecccc
Q 000858 1049 VDEVD 1053 (1251)
Q Consensus 1049 IDEID 1053 (1251)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99994
No 415
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.65 E-value=0.087 Score=59.74 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
+..-+||+|+||||||+|+..+|.+. |-+.+.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34558999999999999999886643 556555553
No 416
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.65 E-value=0.084 Score=58.15 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~ 1006 (1251)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999973
No 417
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.65 E-value=0.011 Score=61.90 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
..|+|+|++|+|||++++.+|..+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999998665
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.62 E-value=0.53 Score=57.34 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=46.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccc----------c-----cc--C---chHHHHHHHHHH
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS----------K-----WF--G---EGEKYVKAVFSL 1038 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~s~L~s----------~-----~~--G---~se~~I~~lF~~ 1038 (1251)
++.-+++.|++|+|||+++..+|..+ |..+..+++..... . ++ + .........+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 34679999999999999988887663 56666666542211 0 01 0 112334455666
Q ss_pred HHhcCCceEEEcccccc
Q 000858 1039 ASKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 1039 A~k~~PsILfIDEID~L 1055 (1251)
+......+|+||=..++
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 65666679999987654
No 419
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.62 E-value=0.0094 Score=63.11 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s 1018 (1251)
+-|+|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4589999999999999999999998877765543
No 420
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.60 E-value=0.03 Score=58.07 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=41.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---ccC----chHHHHHHHHHHHHh--cCCceEEEccc
Q 000858 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---WFG----EGEKYVKAVFSLASK--IAPSVVFVDEV 1052 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~---~~G----~se~~I~~lF~~A~k--~~PsILfIDEI 1052 (1251)
++|.|+||+|||++|+.++..+ +...+.++...+... ..+ .....++.+...+.. ....++++|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~ 79 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFI 79 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccC
Confidence 7899999999999999999988 667777765433211 111 112333444444432 23467888865
No 421
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.58 E-value=1.7 Score=52.52 Aligned_cols=204 Identities=22% Similarity=0.241 Sum_probs=114.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc---------------cccccCc-----hHHHHHHHHHH
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI---------------TSKWFGE-----GEKYVKAVFSL 1038 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L---------------~s~~~G~-----se~~I~~lF~~ 1038 (1251)
+||.-||+.|--|+||||.+..+|..+ +..+..+.|... --.+++. .....+.....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 466789999999999999999999887 555555554221 1112222 23456778888
Q ss_pred HHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCc--HHHHhcccc-ccc
Q 000858 1039 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD--EAVVRRLPR-RLM 1115 (1251)
Q Consensus 1039 A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld--~aLlrRF~~-~I~ 1115 (1251)
|+...-.||++|=..++- ....+++++...-+-+.+ .+-++|+=++.-.+..+ .+|-.+.+. -+.
T Consensus 178 ak~~~~DvvIvDTAGRl~----------ide~Lm~El~~Ik~~~~P--~E~llVvDam~GQdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLH----------IDEELMDELKEIKEVINP--DETLLVVDAMIGQDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred HHHcCCCEEEEeCCCccc----------ccHHHHHHHHHHHhhcCC--CeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence 888888999999998761 113344554443333333 24556665554333332 333333322 233
Q ss_pred CCCCCHHHHHHH---HHHHHhh--------cccC--ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000858 1116 VNLPDAPNREKI---IRVILAK--------EELA--SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1182 (1251)
Q Consensus 1116 l~lPd~eeR~eI---L~~ll~k--------~~l~--~dvdl~~LA~~T~GySgaDL~~L~~~Aa~~airriie~~~~ek~ 1182 (1251)
+.-.|-+.|--- +++.+.. +.+. ...+.+.+|.+.=| -+|+..|++.|...--.+ +.+..
T Consensus 246 lTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG--MGDv~sLvEk~~~~~d~e-----~a~~~ 318 (451)
T COG0541 246 LTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG--MGDVLSLIEKAEEVVDEE-----EAEKL 318 (451)
T ss_pred EEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC--cccHHHHHHHHHHhhhHH-----HHHHH
Confidence 444555555321 1222221 1121 34567888887754 469999998886433221 11111
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000858 1183 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1216 (1251)
Q Consensus 1183 l~~~e~~~~~~~~~~~~~r~Lt~eDF~~Al~~v~ 1216 (1251)
.... ..-..+.+||.+.+++++
T Consensus 319 ~~kl------------~~g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 319 AEKL------------KKGKFTLEDFLEQLEQMK 340 (451)
T ss_pred HHHH------------HhCCCCHHHHHHHHHHHH
Confidence 0000 012388899999888765
No 422
>PRK14528 adenylate kinase; Provisional
Probab=95.56 E-value=0.012 Score=63.34 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
+.|+|.||||+|||++++.++..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3699999999999999999999999887654
No 423
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.55 E-value=0.051 Score=58.30 Aligned_cols=69 Identities=30% Similarity=0.479 Sum_probs=45.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cccc---cc----------cCchHHHHHHHHHHHHhcCCceEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KW----------FGEGEKYVKAVFSLASKIAPSVVF 1048 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg--~~fi~V~~s-~L~s---~~----------~G~se~~I~~lF~~A~k~~PsILf 1048 (1251)
..++|.||+|+|||+++++++.... ...+.+... ++.. .+ .+........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998763 222322211 1100 00 011123456677778888999999
Q ss_pred Ecccc
Q 000858 1049 VDEVD 1053 (1251)
Q Consensus 1049 IDEID 1053 (1251)
+.|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99993
No 424
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.55 E-value=0.061 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 000858 985 KGILLFGPPGTGKTM-LAKAVATEA 1008 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~-LAkAIA~el 1008 (1251)
..++|.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555544
No 425
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.54 E-value=0.012 Score=62.10 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
.-|+|.||||+|||++++.++..+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3689999999999999999999998765543
No 426
>PRK06547 hypothetical protein; Provisional
Probab=95.52 E-value=0.013 Score=62.49 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
++.-|+|.|++|+|||++|+.++..++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467899999999999999999999988877654
No 427
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.52 E-value=0.08 Score=57.45 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVA 1005 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1251)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 428
>PF13479 AAA_24: AAA domain
Probab=95.49 E-value=0.048 Score=59.92 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=37.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecccc-cccc-----c-CchHHHHHHHHHHH--HhcCCceEEEccccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSI-TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVVFVDEVDS 1054 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~-fi~V~~s~L-~s~~-----~-G~se~~I~~lF~~A--~k~~PsILfIDEID~ 1054 (1251)
-.+||||+||+|||++|..+ +-+ |+.+..... ...+ + -..-..+.+.+..+ ....-.+|+||.++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 46999999999999999888 222 233332211 0000 0 01222344444333 223346999998887
Q ss_pred c
Q 000858 1055 M 1055 (1251)
Q Consensus 1055 L 1055 (1251)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 6
No 429
>PRK13946 shikimate kinase; Provisional
Probab=95.47 E-value=0.012 Score=63.03 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998776
No 430
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.47 E-value=0.073 Score=61.09 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=27.5
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000858 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1251)
Q Consensus 492 s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lD 526 (1251)
.+-+||+||+| ....+||+++|+.++.++.+++
T Consensus 30 ~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 30 LDHLLLYGPPG--LGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 35589999999 8999999999999887665543
No 431
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.46 E-value=0.023 Score=66.08 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 981 ~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
..+...|+|+|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 446678999999999999999999999999999554
No 432
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.06 Score=58.83 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000858 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
=|+|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 38999999999999999999998
No 433
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.46 E-value=0.11 Score=55.85 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 000858 987 ILLFGPPGTGKTMLAKAVA 1005 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA 1005 (1251)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 434
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.46 E-value=0.014 Score=62.01 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~ 1017 (1251)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887763
No 435
>PRK02496 adk adenylate kinase; Provisional
Probab=95.45 E-value=0.013 Score=62.46 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
.++|.||||+|||++++.|+..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999999877654
No 436
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.43 E-value=0.06 Score=56.54 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=43.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccc--------ccccC-----chHHHHHHHHHHHHhcCCceE
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFG-----EGEKYVKAVFSLASKIAPSVV 1047 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~--~fi~V~~s~L~--------s~~~G-----~se~~I~~lF~~A~k~~PsIL 1047 (1251)
+...+.|.||+|+|||+|.+.|+..... --+.++...+. ...++ .....-+-.+..|--..|.||
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4456999999999999999999876521 11223221111 00011 011223334556666789999
Q ss_pred EEccccc
Q 000858 1048 FVDEVDS 1054 (1251)
Q Consensus 1048 fIDEID~ 1054 (1251)
++||--.
T Consensus 105 llDEP~~ 111 (163)
T cd03216 105 ILDEPTA 111 (163)
T ss_pred EEECCCc
Confidence 9999853
No 437
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.40 E-value=0.093 Score=56.90 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVA 1005 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1251)
+.++|+||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 438
>PRK04328 hypothetical protein; Provisional
Probab=95.39 E-value=0.12 Score=58.17 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
.+...+||+||||+|||+|+..++.+. |-+.+.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 344569999999999999998876542 455555543
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.39 E-value=0.013 Score=63.93 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
|+|+||||+|||++|+.||..+|++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999999877654
No 440
>PLN02200 adenylate kinase family protein
Probab=95.38 E-value=0.016 Score=64.77 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=29.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~ 1021 (1251)
+.-|+|.|+||+|||++|+.||..+|++. +++.+++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 45689999999999999999999998754 5555554
No 441
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.38 E-value=0.036 Score=71.04 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred cceeEEcc---CCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCceEEeeCCCEEEEccCC
Q 000858 151 GAVFTVGH---NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 227 (1251)
Q Consensus 151 ~~~~t~G~---~~~cd~~~~d~~~s~~~c~l~~~~~~~~~~a~le~~~~~g~v~vNg~~~~k~~~~~L~~gdev~f~~~~ 227 (1251)
.-+=+||| +..-|+.|.++.|---||.|++. +|.-|+.|+-.+.--| |||||.|.- ...|+.||.|+|+ |
T Consensus 476 eG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~--~g~~~vtl~p~e~aet-yVNGk~v~e--p~qL~~GdRiilG--~ 548 (1221)
T KOG0245|consen 476 EGETRVGREDASSRQDIVLSGQLIREQHCSIRNE--GGNDVVTLEPCEDAET-YVNGKLVTE--PTQLRSGDRIILG--G 548 (1221)
T ss_pred cCceecCCCCcccCCceEecchhhhhhceEEEec--CCCceEEeccCCccce-eEccEEcCC--cceeccCCEEEEc--C
Confidence 45668995 34559999999999999999986 4444888988877766 899999976 6789999999995 6
Q ss_pred CeeEEeeecC
Q 000858 228 KHSYIFQQLS 237 (1251)
Q Consensus 228 ~~ayif~~l~ 237 (1251)
+|.|.|-+..
T Consensus 549 ~H~frfn~P~ 558 (1221)
T KOG0245|consen 549 NHVFRFNHPE 558 (1221)
T ss_pred ceeEEecCHH
Confidence 8999998873
No 442
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.34 E-value=0.015 Score=63.63 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
.|+|+||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999776664
No 443
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.11 Score=62.00 Aligned_cols=97 Identities=23% Similarity=0.383 Sum_probs=68.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccc------ccccC--------chHHHHHHHHHHHHhcCCc
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT------SKWFG--------EGEKYVKAVFSLASKIAPS 1045 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~el--g~~fi~V~~s~L~------s~~~G--------~se~~I~~lF~~A~k~~Ps 1045 (1251)
-|..-+||-|.||.|||+|.-.++..+ ..++++++..+-. .+-.+ -.|..+..+...+...+|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 344569999999999999888777666 2378888875521 11111 2456788899999999999
Q ss_pred eEEEccccccccCC--CCCchHHHHHHHHHhHHhh
Q 000858 1046 VVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVN 1078 (1251)
Q Consensus 1046 ILfIDEID~L~~~r--~~~~~~e~~~~il~~LL~~ 1078 (1251)
+++||-|..++... ..++.-...+....+|+..
T Consensus 171 lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 171 LVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 99999999998654 2244444556666666543
No 444
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.29 E-value=0.036 Score=65.38 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000858 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
-++|.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 445
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.29 E-value=0.034 Score=62.29 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000858 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L 1020 (1251)
|+|+|+||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 566777765433
No 446
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.015 Score=61.23 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~ 1014 (1251)
-|-|.|||||||||+|+.||..+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36789999999999999999999999875
No 447
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.41 Score=53.92 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=89.3
Q ss_pred ceEEEEcCCC-ChHHHHHHHHHHHhCCc---------EEEEeccccc---ccccCchHHHHHHHHHHHHhc----CCceE
Q 000858 985 KGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSIT---SKWFGEGEKYVKAVFSLASKI----APSVV 1047 (1251)
Q Consensus 985 ~gVLL~GPPG-TGKT~LAkAIA~elg~~---------fi~V~~s~L~---s~~~G~se~~I~~lF~~A~k~----~PsIL 1047 (1251)
...||.|..+ +||..++.-++..+-+. ++.+....-. +.. -.-..+|++-..+... ..-|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~--I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKN--ISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCc--ccHHHHHHHHHHHhhCcccCCcEEE
Confidence 5699999998 99999999888776332 2223211100 011 1234566665555432 33699
Q ss_pred EEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccCCCCCHHHHHHH
Q 000858 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 1127 (1251)
Q Consensus 1048 fIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eI 1127 (1251)
+|+++|.|- ....+.|+..++. ++.++++|..|..+..+.+.+++|+ ..+.+..|....-.++
T Consensus 94 II~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 94 IIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHH
Confidence 999999982 2344566666654 3466888888888999999999998 6888999998777777
Q ss_pred HHHHHhhc
Q 000858 1128 IRVILAKE 1135 (1251)
Q Consensus 1128 L~~ll~k~ 1135 (1251)
...++...
T Consensus 157 ~~~~~~p~ 164 (263)
T PRK06581 157 YSQFIQPI 164 (263)
T ss_pred HHHhcccc
Confidence 77666543
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.26 E-value=0.18 Score=64.52 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=85.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C--CcEEEEecccccc------------cc---cCc-------------hHHHH
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA--G--ANFINISMSSITS------------KW---FGE-------------GEKYV 1032 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el--g--~~fi~V~~s~L~s------------~~---~G~-------------se~~I 1032 (1251)
+-+||.-|.|.|||+++...+..+ + .-++.++-++... .+ .+. .+..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999987633 3 3444554433100 00 011 12245
Q ss_pred HHHHHH-HHhcCCceEEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecC-CCC-CCcHHHHhc
Q 000858 1033 KAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPF-DLDEAVVRR 1109 (1251)
Q Consensus 1033 ~~lF~~-A~k~~PsILfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN-~p~-~Ld~aLlrR 1109 (1251)
..+|.+ +....|..||||+.+.+- ++.-++.+ .-|+.. .+.++.+|.+|. +|. .+..--++
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l----~fLl~~-------~P~~l~lvv~SR~rP~l~la~lRlr- 181 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHEAL----RFLLKH-------APENLTLVVTSRSRPQLGLARLRLR- 181 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHHHH----HHHHHh-------CCCCeEEEEEeccCCCCcccceeeh-
Confidence 555543 456678999999999872 22333333 334333 235677777774 332 22211111
Q ss_pred ccccccCC----CCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 000858 1110 LPRRLMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1251)
Q Consensus 1110 F~~~I~l~----lPd~eeR~eIL~~ll~k~~l~~dvdl~~LA~~T~GySg 1155 (1251)
+..+++. ..+.+|-.++|+..... -.+..++..|-..++|+..
T Consensus 182 -~~llEi~~~~Lrf~~eE~~~fl~~~~~l--~Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 182 -DELLEIGSEELRFDTEEAAAFLNDRGSL--PLDAADLKALYDRTEGWAA 228 (894)
T ss_pred -hhHHhcChHhhcCChHHHHHHHHHcCCC--CCChHHHHHHHhhcccHHH
Confidence 1122222 13677777887765422 1245678888899998854
No 449
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.25 E-value=0.059 Score=63.10 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cccccc------cccCchHHHHHHHHHHHHhcCCceEEEccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 1052 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~-~s~L~s------~~~G~se~~I~~lF~~A~k~~PsILfIDEI 1052 (1251)
.++||.|++|+|||+++++++... +..++.+. ..++.- .+.....-....++..+.+..|..|++.||
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999998876 22333332 112110 011111224667788888999999999999
Q ss_pred c
Q 000858 1053 D 1053 (1251)
Q Consensus 1053 D 1053 (1251)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 450
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.23 E-value=0.15 Score=56.05 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
+..-++|.|+||+|||+++..++.+. |.+.+.++.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34569999999999999999887553 666666665
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.22 E-value=0.3 Score=57.19 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
++.-++|.||+|+|||+++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34568999999999999999998876 445554544
No 452
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.21 E-value=0.04 Score=58.07 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc---Cch----HHHHHHHHHHHHhc--CCceEEEccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF---GEG----EKYVKAVFSLASKI--APSVVFVDEV 1052 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~~~---G~s----e~~I~~lF~~A~k~--~PsILfIDEI 1052 (1251)
.-|+|+|.+|+|||+||+++.+.+ |.+++.+++..+...+. +.. ...++.+...|+.. +..|+++.=|
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~i 82 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAFI 82 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeec
Confidence 458999999999999999998887 88999999876554321 211 33556666666432 2345555533
No 453
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.15 Score=61.11 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=43.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----c---cc---------cCchHHHHHHHHHHHHh-cC
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----S---KW---------FGEGEKYVKAVFSLASK-IA 1043 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~----s---~~---------~G~se~~I~~lF~~A~k-~~ 1043 (1251)
++.|+|.||+|+|||+++..||..+ |..+..+++.... . .| .......+......+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999998776 4455445442211 0 00 01223344444444443 23
Q ss_pred CceEEEcccccc
Q 000858 1044 PSVVFVDEVDSM 1055 (1251)
Q Consensus 1044 PsILfIDEID~L 1055 (1251)
-.+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 578888877654
No 454
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.20 E-value=0.063 Score=62.80 Aligned_cols=69 Identities=25% Similarity=0.418 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-cccc---c---cccCchHHHHHHHHHHHHhcCCceEEEccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT---S---KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 1052 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-----g~~fi~V~~-s~L~---s---~~~G~se~~I~~lF~~A~k~~PsILfIDEI 1052 (1251)
.++||.|++|+|||+++++++... ...++.+.- .++. . .+....+.....++..+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 579999999999999999999764 122333221 1211 0 011112234677888899999999999999
Q ss_pred c
Q 000858 1053 D 1053 (1251)
Q Consensus 1053 D 1053 (1251)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 455
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.20 E-value=0.43 Score=54.66 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s 1018 (1251)
+++-++|.||+|+|||+++..+|..+ |..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44678899999999999999998776 5556555543
No 456
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.20 E-value=0.031 Score=61.03 Aligned_cols=111 Identities=22% Similarity=0.288 Sum_probs=59.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccCchHHHHHHHHHHHHhcCCceEEEccccccccCCCCCch
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1064 (1251)
.-++|.|+.|+|||++.+.|+.+. +.-+ +.. ... .... ...... -||.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~---~~~--~~~-kd~~---~~l~~~---~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDS---IND--FDD-KDFL---EQLQGK---WIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCc---ccc--CCC-cHHH---HHHHHh---HheeHHHHhhcc-----hhh
Confidence 458999999999999999997652 1101 110 011 1111 111111 588999999872 122
Q ss_pred HHHHHHHHHhHHhhccCCcc----cCCccEEEEEecCCCCCCc-HHHHhcccccccCC
Q 000858 1065 HEAMRKMKNEFMVNWDGLRT----KDKERVLVLAATNRPFDLD-EAVVRRLPRRLMVN 1117 (1251)
Q Consensus 1065 ~e~~~~il~~LL~~ldgl~~----k~~~~VlVIaTTN~p~~Ld-~aLlrRF~~~I~l~ 1117 (1251)
.+.+..++..-...++.... .-+....+|||||..+-|. +.--||| ..+.+.
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~ 168 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVS 168 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEc
Confidence 33343333332222222111 1235678899999987554 3445677 344443
No 457
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.17 E-value=0.015 Score=57.01 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000858 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~el 1008 (1251)
|+|.|+||+|||++|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 458
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.22 Score=60.13 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=25.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el----g~~fi~V~~ 1017 (1251)
.-++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 458999999999999999998654 444544444
No 459
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.08 E-value=0.076 Score=56.50 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=42.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecccc-----------cccc-------c---------
Q 000858 986 GILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSI-----------TSKW-------F--------- 1025 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~el-------------g~~fi~V~~s~L-----------~s~~-------~--------- 1025 (1251)
-++|+||+|+|||+++..++..+ +.+++.++...- ...+ +
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48999999999999999887654 235666665321 0000 0
Q ss_pred --------C-chHHHHHHHHHHHHh-cCCceEEEccccccccC
Q 000858 1026 --------G-EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 1058 (1251)
Q Consensus 1026 --------G-~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~ 1058 (1251)
+ .....+..+...+.. ..+.+|+||.+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 0 012234455666666 57899999999999765
No 460
>PRK14527 adenylate kinase; Provisional
Probab=95.03 E-value=0.019 Score=61.66 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
+.-|+|+||||+|||++|+.|+..+++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 35699999999999999999999998765543
No 461
>PRK04040 adenylate kinase; Provisional
Probab=95.00 E-value=0.024 Score=61.32 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA--GANFI 1013 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el--g~~fi 1013 (1251)
.-|+|+|+||+|||++++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 569999999999999999999999 66654
No 462
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.98 E-value=0.035 Score=64.44 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEec-ccccc---c----c-----cCchHHHHHHHHHHHHhcCCceEE
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS---K----W-----FGEGEKYVKAVFSLASKIAPSVVF 1048 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~elg--~~fi~V~~-s~L~s---~----~-----~G~se~~I~~lF~~A~k~~PsILf 1048 (1251)
...++|.||+|+|||+|+++++..+. ...+.+.- .++.- . . .+...-....++..+.+..|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 36899999999999999999987762 22222221 11100 0 0 011123456677888889999999
Q ss_pred Ecccc
Q 000858 1049 VDEVD 1053 (1251)
Q Consensus 1049 IDEID 1053 (1251)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99994
No 463
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.98 E-value=0.074 Score=60.82 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=37.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--c-ccc-CchHHHHHHHHHHHHh---cCCceEEEcccccc
Q 000858 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KWF-GEGEKYVKAVFSLASK---IAPSVVFVDEVDSM 1055 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~--s-~~~-G~se~~I~~lF~~A~k---~~PsILfIDEID~L 1055 (1251)
|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .|. ...|+.++..+..+-. ....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 8999999999999999998876 5677777744332 1 121 2235555554432211 23479999998765
No 464
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.97 E-value=0.062 Score=58.20 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccccc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK 1023 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el-g~~fi~V~~s~L~s~ 1023 (1251)
.|.-++|.|+||+|||+++..+...+ +..++.++..++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 34679999999999999999999988 778888887665543
No 465
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.1 Score=54.14 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccccc-------c---c---cCchHHHHHHHHHHHHhcCCceE
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-------K---W---FGEGEKYVKAVFSLASKIAPSVV 1047 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~~--fi~V~~s~L~s-------~---~---~G~se~~I~~lF~~A~k~~PsIL 1047 (1251)
+...+.|.|++|+|||+|+++|+..+... -+.++...+.. . + +..++ ..+-.+..+--..|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEE
Confidence 44568999999999999999998766321 12333221110 0 0 11122 22223444555578999
Q ss_pred EEccccc
Q 000858 1048 FVDEVDS 1054 (1251)
Q Consensus 1048 fIDEID~ 1054 (1251)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999964
No 466
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.94 E-value=0.09 Score=55.31 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000858 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s 1018 (1251)
+++.|+||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999998776 6667666654
No 467
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.92 E-value=0.067 Score=64.07 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~elg 1009 (1251)
...++|.||+|+|||+|++.|++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 35699999999999999999998863
No 468
>PRK04182 cytidylate kinase; Provisional
Probab=94.90 E-value=0.024 Score=59.39 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~ 1014 (1251)
.|+|.|++|+|||++++.+|..+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999998865
No 469
>PLN02674 adenylate kinase
Probab=94.89 E-value=0.025 Score=63.63 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
+...|+|.||||+||+++++.||..++++++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 346799999999999999999999999766543
No 470
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.88 E-value=0.023 Score=58.61 Aligned_cols=32 Identities=38% Similarity=0.644 Sum_probs=25.7
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000858 989 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1251)
Q Consensus 989 L~GPPGTGKT~LAkAIA~elg~~fi~V~~s~L~s 1022 (1251)
|.||||+|||++|+.||.++|+.. ++..+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHHH
Confidence 689999999999999999998754 45445443
No 471
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.87 E-value=0.061 Score=61.70 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=46.5
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-c--------c-cccccCchHHHHHHHHHHHHhcCCceEEE
Q 000858 985 KG-ILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-S--------I-TSKWFGEGEKYVKAVFSLASKIAPSVVFV 1049 (1251)
Q Consensus 985 ~g-VLL~GPPGTGKT~LAkAIA~elg----~~fi~V~~s-~--------L-~s~~~G~se~~I~~lF~~A~k~~PsILfI 1049 (1251)
+| ||++||.|+|||+...++-.+.+ .+.+.+.-+ + | ...-+|............|-+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 45 89999999999998888887774 334444321 1 1 11223444444555666677788999999
Q ss_pred ccccc
Q 000858 1050 DEVDS 1054 (1251)
Q Consensus 1050 DEID~ 1054 (1251)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99953
No 472
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.85 E-value=0.088 Score=67.94 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=54.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEeccc----ccccccCchHHHHHHHHHHH----------HhcCCce
Q 000858 986 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 1046 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~el---g--~~fi~V~~s~----L~s~~~G~se~~I~~lF~~A----------~k~~PsI 1046 (1251)
-++|.|+||||||+++++|...+ + .+++-+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986655 4 3444333211 11122232233344444321 1123579
Q ss_pred EEEccccccccCCCCCchHHHHHHHHHhHHhhccCCcccCCccEEEEEecCCC
Q 000858 1047 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1251)
Q Consensus 1047 LfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1099 (1251)
|+|||+..+ . ..++..++..+ . ...++++++=.+..
T Consensus 420 lIvDEaSMv--------d----~~~~~~Ll~~~---~--~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMM--------D----TWLALSLLAAL---P--DHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccC--------C----HHHHHHHHHhC---C--CCCEEEEECccccc
Confidence 999999766 1 12334444332 2 23567777766553
No 473
>PRK06696 uridine kinase; Validated
Probab=94.84 E-value=0.061 Score=59.37 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=31.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~ 1021 (1251)
+.-|.|.|++|+||||||+.|+..+ |.+++.+.+.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3569999999999999999999998 6777777665543
No 474
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.79 E-value=0.15 Score=65.82 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccccc----------------cccCchHHHHHHHHHHHHhcC
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 1043 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e---lg~~fi~V~~s~L~s----------------~~~G~se~~I~~lF~~A~k~~ 1043 (1251)
+..-++|+||+|+|||+|+..++.. .|-..+.++...-.. ......+..+..+-...+...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~ 138 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 3455899999999999999765433 366666666543111 011122333333333344557
Q ss_pred CceEEEcccccccc
Q 000858 1044 PSVVFVDEVDSMLG 1057 (1251)
Q Consensus 1044 PsILfIDEID~L~~ 1057 (1251)
+.+|+||-|..|+.
T Consensus 139 ~~LVVIDSI~aL~~ 152 (790)
T PRK09519 139 LDIVVIDSVAALVP 152 (790)
T ss_pred CeEEEEcchhhhcc
Confidence 89999999999985
No 475
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.78 E-value=0.037 Score=65.31 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=46.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-ccccc----------c--ccCchHHHHHHHHHHHHhcCCceEE
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS----------K--WFGEGEKYVKAVFSLASKIAPSVVF 1048 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~elg~--~fi~V~~-s~L~s----------~--~~G~se~~I~~lF~~A~k~~PsILf 1048 (1251)
..+|||.||+|+|||+++++++..... .++.+.- .++.- . ..+...-....++..+.+..|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 357999999999999999999987632 2333221 11110 0 0011223456788888899999999
Q ss_pred Ecccc
Q 000858 1049 VDEVD 1053 (1251)
Q Consensus 1049 IDEID 1053 (1251)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 99993
No 476
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.75 E-value=0.072 Score=64.99 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=36.6
Q ss_pred cccccccccccchhHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcC
Q 000858 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1251)
Q Consensus 449 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~ 519 (1251)
-..|||+|- ..+..+.++..|-.+ + .+-....+.++|+||+| .....|++|+|++..
T Consensus 117 ~~~tfd~fv--~g~~n~~a~~~~~~~-------~---~~~~~~~~~l~l~G~~G--~GKThL~~ai~~~~~ 173 (450)
T PRK00149 117 PKYTFDNFV--VGKSNRLAHAAALAV-------A---ENPGKAYNPLFIYGGVG--LGKTHLLHAIGNYIL 173 (450)
T ss_pred CCCcccccc--cCCCcHHHHHHHHHH-------H---hCcCccCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 345899984 345555444433321 1 11112335599999999 799999999998863
No 477
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.021 Score=60.75 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~ 1016 (1251)
.|+|+|.||+|||++++.++ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999888765
No 478
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.74 E-value=0.028 Score=58.68 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000858 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~elg~~fi~ 1014 (1251)
|.|+|++|||||+|+++|+.. |++++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999998 888763
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.74 E-value=0.15 Score=62.97 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=52.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccC----------------------chHH
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEK 1030 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~s~------~~G----------------------~se~ 1030 (1251)
.+...+||.||||+|||+|+..++.+. |-+.+++...+-... .+| ..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 344569999999999999999987755 556666654321000 000 1255
Q ss_pred HHHHHHHHHHhcCCceEEEccccccc
Q 000858 1031 YVKAVFSLASKIAPSVVFVDEVDSML 1056 (1251)
Q Consensus 1031 ~I~~lF~~A~k~~PsILfIDEID~L~ 1056 (1251)
.+..+.+......|.+|+||-+..+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 67777788888889999999998774
No 480
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.73 E-value=0.028 Score=58.49 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
-|.|+|++|+|||++|+.+++.+|++++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999999887654
No 481
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.73 E-value=1.5 Score=53.11 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCCcHHHHhcccccccCCCCCHHHHHHHHHHHHhhcccC-------------C-----hhcHHHHHHHcC--CCcHHHHH
Q 000858 1100 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-------------S-----DVDLEGIANMAD--GYSGSDLK 1159 (1251)
Q Consensus 1100 ~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL~~ll~k~~l~-------------~-----dvdl~~LA~~T~--GySgaDL~ 1159 (1251)
..|..++=.|.-+.|.+.-.+.+.-..++...+....-. . ..+..+|....+ |---.||.
T Consensus 197 k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe 276 (431)
T PF10443_consen 197 KPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLE 276 (431)
T ss_pred hhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHH
Confidence 345566655544788888888888888888887653110 0 123333333332 22346888
Q ss_pred HHHHHHH-----hhhhHHHHHHHH
Q 000858 1160 NLCVTAA-----HCPIREILEKEK 1178 (1251)
Q Consensus 1160 ~L~~~Aa-----~~airriie~~~ 1178 (1251)
.|+++.. ..|+.+++++..
T Consensus 277 ~lvrRiksGe~p~~Av~~iI~qsa 300 (431)
T PF10443_consen 277 FLVRRIKSGESPEEAVEEIISQSA 300 (431)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8888764 456666665543
No 482
>PRK01184 hypothetical protein; Provisional
Probab=94.72 E-value=0.027 Score=59.91 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~V 1015 (1251)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48999999999999987 788999888655
No 483
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.64 E-value=0.22 Score=54.80 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000858 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1251)
Q Consensus 982 ~P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~ 1017 (1251)
.+...++|.|+||+|||+|+..++.+. +.+.+.++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 344669999999999999999876533 445555553
No 484
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.63 E-value=0.13 Score=59.85 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el---------g~~fi~V~~s~ 1019 (1251)
..-++|+||||+|||.|+..+|... +..+++++...
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 3458999999999999999998653 23677777644
No 485
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.59 E-value=0.054 Score=63.45 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s 1018 (1251)
..|+|.|++|+|||+|++.++..++.+++.--..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 4799999999999999999999999988655443
No 486
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.57 E-value=1 Score=53.28 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=50.0
Q ss_pred HHHhhhCCCeEEecCCch-hHHHHHHHHHHhh--h---------hhhhhcccchhHHHHHhhhCCCCcccchhhhccc--
Q 000858 795 KQISRLFPNKVTIQLPQD-EALLSDWKQQLER--D---------VETLKGQSNIISIRSVLSRNGLDCVDLESLCIKD-- 860 (1251)
Q Consensus 795 ~~l~~lf~~~i~i~~P~D-eALlRRferq~e~--~---------Lpd~~gR~~Il~IhT~l~~~~l~~~dLe~La~~t-- 860 (1251)
+++..+|.-.|.+..|.+ +.......+...+ + ......+.+|+..+..+..-.+++..++.++...
T Consensus 187 ~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~ 266 (334)
T PRK13407 187 PQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIA 266 (334)
T ss_pred HHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 678888999999998877 3322211111111 1 1223445677777776666666666665544332
Q ss_pred -C-CCCHHHHHHHHhhhhhhHhhh
Q 000858 861 -Q-TLTTEGVEKIVGWALSHHFMH 882 (1251)
Q Consensus 861 -k-g~sgadI~~Lv~~A~s~Al~r 882 (1251)
. .=.-++|. +++.|+.+|+..
T Consensus 267 ~~~~s~Ra~i~-l~~aA~a~A~l~ 289 (334)
T PRK13407 267 LGSDGLRGELT-LLRAARALAAFE 289 (334)
T ss_pred HCCCCchHHHH-HHHHHHHHHHHc
Confidence 2 11234555 788888888763
No 487
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.56 E-value=0.037 Score=66.48 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=59.5
Q ss_pred ccchhHHHHHHHHhhhhhccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCCC-CCCC
Q 000858 458 YYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP-GGSS 535 (1251)
Q Consensus 458 Yylse~tk~~L~~~~~~hLk~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL~lDs~~~~-g~~~ 535 (1251)
.+--++.|.+|.-|.|.|.+...+.+-.+ .+.+ +.|||.||+| ....+|||+||+.++++++-+|.+.+. .++.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p--~~ILLiGppG--~GKT~lAraLA~~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP--KNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCC--ceEEEECCCC--CCHHHHHHHHHHHhCCeEEEeecceeecCCcc
Confidence 33458999999999999977765532222 2333 7899999999 789999999999999999999998775 3454
Q ss_pred -ccc
Q 000858 536 -KEA 538 (1251)
Q Consensus 536 -~e~ 538 (1251)
.+.
T Consensus 90 G~dv 93 (441)
T TIGR00390 90 GRDV 93 (441)
T ss_pred cCCH
Confidence 344
No 488
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.54 E-value=0.1 Score=55.96 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=41.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccc--cccc--cCchHHHHHHHHHHHHhcCCceEEEccccc
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSI--TSKW--FGEGEKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~elg~--~fi~V~~s~L--~s~~--~G~se~~I~~lF~~A~k~~PsILfIDEID~ 1054 (1251)
+..-+.|.||.|+|||+|++.|+..... =-+.++...+ .... ...++ .-+-.+..|-...|.++++||--.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHHHHHhcCCCEEEEECCcc
Confidence 4456899999999999999999976521 1122222111 0011 11112 223334455556799999999854
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.54 E-value=0.095 Score=62.27 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=42.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecc-ccccc------------ccCchHHHHHHHHHHHHhcCCc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS-SITSK------------WFGEGEKYVKAVFSLASKIAPS 1045 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg------~~fi~V~~s-~L~s~------------~~G~se~~I~~lF~~A~k~~Ps 1045 (1251)
.-|+|+||+|+|||+++++++.++. ..++.+.-+ ++.-. ..+............+.+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4599999999999999999988762 234333211 11100 0011111234445557778999
Q ss_pred eEEEcccc
Q 000858 1046 VVFVDEVD 1053 (1251)
Q Consensus 1046 ILfIDEID 1053 (1251)
+|+|.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999984
No 490
>PTZ00202 tuzin; Provisional
Probab=94.52 E-value=0.72 Score=56.03 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=45.8
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000858 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1251)
Q Consensus 948 fddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~elg~~fi~V~~s 1018 (1251)
..++.|.+.....|...+.. .... .+.-++|+|++|+|||+|++.++..++.+.+.++..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~-~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTA-HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCC-CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34789999999999887752 1112 224689999999999999999999998776666643
No 491
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.51 E-value=0.036 Score=66.11 Aligned_cols=113 Identities=21% Similarity=0.324 Sum_probs=66.5
Q ss_pred hhhcccCCCCHHHHHHHHhhhhhhHhhhccC--CCCCCCccccccCchhhhHHHHhhhhhhhhhhhhhhhhccchhHHHH
Q 000858 855 SLCIKDQTLTTEGVEKIVGWALSHHFMHCSE--APGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEK 932 (1251)
Q Consensus 855 ~La~~tkg~sgadI~~Lv~~A~s~Al~r~~~--~i~~~~kl~Id~~sIkv~~~df~~al~eik~~~~slk~iv~~~e~ek 932 (1251)
-+...++-++.++++.+.++-...|-+.... .+...+...+..+++++.. --.|+...+. -
T Consensus 173 ~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvI--------arPPfSd~~E---------I 235 (604)
T COG1855 173 LVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVI--------ARPPFSDRWE---------I 235 (604)
T ss_pred EEEcCCccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEE--------ecCCCCCceE---------E
Confidence 3445567788889998888877777543211 0112333333333333322 0012111110 0
Q ss_pred hhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000858 933 KLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 933 ~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pl~~pelf~k~~l~~P~~gVLL~GPPGTGKT~LAkAIA~el 1008 (1251)
..+-| -...+++|..-.+.+++.|.+. ..|||+.||||.|||++|+|+|.-+
T Consensus 236 ---TavRP--vvk~~ledY~L~dkl~eRL~er-------------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 236 ---TAVRP--VVKLSLEDYGLSDKLKERLEER-------------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ---EEEee--eEEechhhcCCCHHHHHHHHhh-------------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 00001 1145778888888888888772 2589999999999999999999876
No 492
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.50 E-value=0.032 Score=63.86 Aligned_cols=31 Identities=39% Similarity=0.491 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 1015 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el-g~~fi~V 1015 (1251)
.-|+|.|+||||||++|+.|++.+ ++.++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 358899999999999999999999 6555543
No 493
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.49 E-value=0.16 Score=58.89 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~el---------g~~fi~V~~s~ 1019 (1251)
.-++|+||||+|||+|+..+|... +...++++...
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 457999999999999999998663 23677777644
No 494
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.45 E-value=0.18 Score=57.97 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccc
Q 000858 984 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 1019 (1251)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~el----g-~~fi~V~~s~ 1019 (1251)
+..++|.||+|+|||+++..+|..+ | ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3569999999999999999998765 3 5565565543
No 495
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=94.44 E-value=0.027 Score=50.44 Aligned_cols=35 Identities=34% Similarity=0.697 Sum_probs=31.4
Q ss_pred ccccHHHHHHHHHHhcccccccccchhhhhhHHHHhc
Q 000858 1201 RPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1237 (1251)
Q Consensus 1201 r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG 1237 (1251)
.+|+++||..|+++++||++.+ .+..+.+|+..||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~--dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQE--DLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HH--HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Confidence 4799999999999999999987 6788999999998
No 496
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.42 E-value=0.066 Score=64.45 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000858 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1251)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~elg~~fi~ 1014 (1251)
+.|.|.|++|||||+|+++||..+|..++.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999887654
No 497
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.42 E-value=0.029 Score=60.42 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000858 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~el 1008 (1251)
.+|.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777766555
No 498
>PRK14526 adenylate kinase; Provisional
Probab=94.41 E-value=0.04 Score=60.75 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000858 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1251)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~elg~~fi~ 1014 (1251)
.++|+||||+|||++++.||..++++++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999876654
No 499
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.39 E-value=0.24 Score=55.17 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 000858 987 ILLFGPPGTGKTMLAKAVATE 1007 (1251)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~e 1007 (1251)
-||+||+|+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998764
No 500
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.39 E-value=0.22 Score=60.47 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=46.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------c-----cccC-----chHHHHHHHHHHH
Q 000858 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------S-----KWFG-----EGEKYVKAVFSLA 1039 (1251)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~el---g~~fi~V~~s~L~----------s-----~~~G-----~se~~I~~lF~~A 1039 (1251)
++.-|+|+|++|+||||++..+|..+ |..+..+++.... . .++. .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34669999999999999999998777 6666666653211 0 0111 1122233445555
Q ss_pred HhcCCceEEEcccccc
Q 000858 1040 SKIAPSVVFVDEVDSM 1055 (1251)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1251)
+...-.+||||=..++
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5545689999987654
Done!